Citrus Sinensis ID: 001403
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1084 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WV90 | 1120 | Topless-related protein 1 | yes | no | 0.963 | 0.932 | 0.537 | 0.0 | |
| Q94AI7 | 1131 | Protein TOPLESS OS=Arabid | no | no | 0.984 | 0.943 | 0.532 | 0.0 | |
| Q27GK7 | 1135 | Topless-related protein 4 | no | no | 0.971 | 0.927 | 0.493 | 0.0 | |
| Q9LRZ0 | 1131 | Topless-related protein 2 | no | no | 0.959 | 0.919 | 0.463 | 0.0 | |
| Q84JM4 | 1108 | Topless-related protein 3 | no | no | 0.964 | 0.944 | 0.464 | 0.0 | |
| Q00808 | 1356 | Vegetative incompatibilit | yes | no | 0.264 | 0.211 | 0.284 | 8e-20 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.485 | 0.344 | 0.221 | 1e-14 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.470 | 0.405 | 0.216 | 2e-13 | |
| P49695 | 742 | Probable serine/threonine | no | no | 0.233 | 0.340 | 0.249 | 1e-11 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.463 | 0.298 | 0.225 | 1e-11 |
| >sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3 | Back alignment and function desciption |
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Score = 1164 bits (3011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 602/1119 (53%), Positives = 771/1119 (68%), Gaps = 75/1119 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD KA++IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP+++ RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQLQE---------TDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C+L G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPF 239
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
Q T SP + W S S + AVS ++L P+ +A +D P D
Sbjct: 240 QPTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYPSGD 299
Query: 268 SDILSEKS-PVRILNEQASTV-----TYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD 321
SD +S+++ P+ I +E + V T+PG ++ + F++ D
Sbjct: 300 SDHVSKRTRPMGISDEVSLGVNMLPMTFPG-----------QAHGHNQTFKAP-----DD 343
Query: 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLL--------GLWDVNSGQKLFIRNFKVWDIG 373
PKTVA+TL +GSS PMSMDFHP++ TLLL GLW+V S ++L + FKVWD+
Sbjct: 344 LPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLS 402
Query: 374 ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 433
CSM + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHV
Sbjct: 403 KCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHV 462
Query: 434 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 493
G VND+AFS P KQ+ V TCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH KENI F
Sbjct: 463 GGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQF 522
Query: 494 IFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 553
IFS ++DGKIKAWLYD++G+RVDY+APG CT MAYSA+G RLFSCGTSK+GESF+VEWN
Sbjct: 523 IFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWN 582
Query: 554 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 613
ESEGA+KRTYQG S+ VV FDT K++ LAAGDD IK WDM+ +QLLT IDA GG
Sbjct: 583 ESEGAVKRTYQG--FHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGG 640
Query: 614 LPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTG 672
L +PRI FNK G+LLAV AN+N IK++ + + LS K ++N I V
Sbjct: 641 LQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVER 700
Query: 673 AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKI 729
+N D + DVKP I+ E+ +KS+V K PS+C+SL LP ++ KI
Sbjct: 701 PASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKI 760
Query: 730 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 789
SRL + N G AI ALASN +HL+W+W RND + +AT +PP+ +QP G M ND
Sbjct: 761 SRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASG-ILMTNDVA 819
Query: 790 DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 849
++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN
Sbjct: 820 ETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 879
Query: 850 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 909
+IAIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ VW+ DG
Sbjct: 880 IIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDG 939
Query: 910 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI- 968
W Q + LQ P G T + S+T +QFH+DQ FL+VHET LAIYE +L C+KQW P+
Sbjct: 940 WEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQW-PVR 998
Query: 969 -SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1027
S+ PI+ ATFSCD ++++TSF+D T+ + ++NL ++CR+ +AYL + S +V+P
Sbjct: 999 ESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLV 1058
Query: 1028 IAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1066
IAAHP + FAVGL++G V++ EP E W V PP E
Sbjct: 1059 IAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097
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Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1157 bits (2994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/1143 (53%), Positives = 780/1143 (68%), Gaps = 76/1143 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD KA++IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP+++ RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPF 239
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
Q T SP + W S S + AVS A++L P+ A ++D P D
Sbjct: 240 QPTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAALKHPRTPPTNASLDYPSAD 299
Query: 268 SDILSEKS-PVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV 326
S+ +S+++ P+ I +E V +S +S ++ F++ D PKTV
Sbjct: 300 SEHVSKRTRPMGISDEVNLGVNMLPMS------FSGQAHGHSPAFKAP-----DDLPKTV 348
Query: 327 AQTLIEGSSSPMSMDFHPVQHTLLL--------GLWDVNSGQKLFIRNFKVWDIGACSML 378
A+TL +GSS PMSMDFHP++ TLLL GLW+V S ++L + FKVWD+ CSM
Sbjct: 349 ARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMP 407
Query: 379 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 438
+ ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHVG VND
Sbjct: 408 LQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVND 467
Query: 439 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 498
++FS P KQ+ VITCGDDKTIKVWDA TG + ++FEGH APVYS+CPH KENI FIFS +
Sbjct: 468 ISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTA 527
Query: 499 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 558
+DGKIKAWLYD++G+RVDYDAPG CT MAYSA+G RLFSCGTSK+GESF+VEWNESEGA
Sbjct: 528 LDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGA 587
Query: 559 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 618
+KRTYQG + S+ VV FDT K++ LAAGDD IK WDM+ VQLLT ID GGL +P
Sbjct: 588 VKRTYQGFHKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASP 645
Query: 619 RICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPI-----STVTG 672
RI FNK G+LLAV NEN IKI+ + + +S K ++N I + T
Sbjct: 646 RIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATS 705
Query: 673 AGIANGSVSV------NEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSK 723
AG A+ S +V N D + DVKP I+ E+ +KS++ K + PS+C+SL LP
Sbjct: 706 AGHADRSANVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPEN 765
Query: 724 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 783
++ KISRL + N G AI ALASN +HL+W+W RN+ + +AT +PP+ +QP G
Sbjct: 766 LRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASG-IL 824
Query: 784 MVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAF 843
M ND ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF
Sbjct: 825 MTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF 884
Query: 844 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 903
+P DNN+IAIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+
Sbjct: 885 HPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLC 944
Query: 904 VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK 963
VW+ DGW Q + L P G APS+T +QFH+DQ FL+VHET LAIYE +L C+K
Sbjct: 945 VWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMK 1004
Query: 964 QWFPISSV-PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLH 1022
QW S+ PI+ ATFSCD ++V+ SF+D T+ + ++NL ++CR+ +AYL + S +
Sbjct: 1005 QWAVRESLAPITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSN 1064
Query: 1023 VYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE--IVGDQPTSTSEGDR 1080
V+P IAAHP +P FAVGL++G V++ EP E W V PP E PT+ S G
Sbjct: 1065 VHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGAS 1124
Query: 1081 AMD 1083
A D
Sbjct: 1125 ASD 1127
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Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1056 bits (2730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/1159 (49%), Positives = 740/1159 (63%), Gaps = 106/1159 (9%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F ++ H LE+ES F+F+M++FED + G+W+DVE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD D AKA++IL K+LK F+ NEELFKE+ LLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L + R++E LSKY GD SAR M+ ELK++IEANP+ + KL+FPS+K RLR LINQSL
Sbjct: 121 LTNFRENEQLSKY-GDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G + PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPF 239
Query: 225 QTTQSPSSWNFSSSMLTDSA----VSFVALSLSDPTNKAVTM---DRPE----------- 266
Q T +P + + + M S VS + L P N AV+M +RP
Sbjct: 240 QPTPAPLTTSLAGWMPNPSVQHPTVSAGPIGLGAP-NSAVSMLKRERPRSPPTNSLSMDY 298
Query: 267 ---DSD-ILSEKSPVRI------LNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316
DS+ +L P I L VTYPG QS
Sbjct: 299 QTADSESVLKRPRPFGISDGVNNLPVNVLPVTYPG--------------------QSHAH 338
Query: 317 TSFS--DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLL--------GLWDVNSGQKLFIRN 366
++S D PK V++ L +GS+ SMDFHPVQ T+LL +W+V S +KL R+
Sbjct: 339 ATYSTDDLPKNVSRILSQGSAI-KSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRS 397
Query: 367 FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 426
FKVWD+ C++ + +L + +VNRVVWSPDG LLGVAYSKHIV +Y+YHGG D R
Sbjct: 398 FKVWDLATCTVNLQASLASEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNH 457
Query: 427 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 486
LEIDAH GNVNDLAFS P +Q+ V+TCG+DKTIKVWDAVTG++ ++FEGH APVYS+CPH
Sbjct: 458 LEIDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPH 517
Query: 487 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 546
KENI FIFS +VDGKIKAWLYD++G+RVDYDAPG CT MAY A+G RLFSCGTSKEGE
Sbjct: 518 QKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGE 577
Query: 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 606
SF+VEWNESEGA+KRTY GL + SV VV FDT K++ L AGD+ +K WDM+ V LL+
Sbjct: 578 SFIVEWNESEGAVKRTYLGLGKR--SVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLS 635
Query: 607 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES----NSVDAAGVLSDNLRKL 662
+ A GGLP +P + NK GTLLAV +N IKIL E +S+ G+ S
Sbjct: 636 STAAEGGLPSSPCLRINKEGTLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPG 695
Query: 663 SV--NPI-------STVTGAGIANGSVS--------VNEDPKE--DVKPEISVEAENKSE 703
SV PI ++ TG ++ G S +N D + DVKP I+ +AE
Sbjct: 696 SVAKGPIVGTFGTPNSSTGMSLSMGERSGPVASVTGLNGDNRSLPDVKPRIADDAEKSKT 755
Query: 704 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 763
+ + S+ ++L LP + ++ +L Y N G AI ALA N H +W+W +++ L
Sbjct: 756 WKLTEISERSQLRTLRLPDTLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLL 815
Query: 764 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM 823
+A + VPP+L+QP G M NDT + N ++ VPCFALSKND+Y+ SASGG ISL+ +M
Sbjct: 816 GKANSNVPPQLWQPSSG-VLMTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMM 874
Query: 824 TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 883
TFKT+ T M P P ATSLAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH KRVTG
Sbjct: 875 TFKTMTTFMAPPPAATSLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTG 934
Query: 884 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 943
L FS+ LN+LVSSG D+Q+ VW +DGW Q + +Q P G + T +QFH+DQ
Sbjct: 935 LAFSNVLNVLVSSGADSQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHV 994
Query: 944 LLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1002
L+VH + LAIYEA +L +KQW P SS ++ A +SCD + ++ +F DG++SI A+ L
Sbjct: 995 LVVHASQLAIYEAPKLENMKQWIPKESSGSVTDAVYSCDSQSIYAAFDDGSVSILTATTL 1054
Query: 1003 EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAV- 1061
+++CRI +YL P+ VYP +AAHP +P QFAVGLT+G V+VIEP P W +
Sbjct: 1055 QLKCRIGPNSYL-PSNPSSRVYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGIS 1113
Query: 1062 LPPDEIVGDQPTSTSEGDR 1080
PP+ G +S D+
Sbjct: 1114 APPENGAGPSVSSAPGSDQ 1132
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Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 993 bits (2566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/1120 (46%), Positives = 720/1120 (64%), Gaps = 80/1120 (7%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F ES H LE+ES F+F++K+FE+ L G+W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD +D AKA+ IL KDLK FA NEEL+KE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSK YGD SAR M ELK++IEANP+ + KL FPS K RLR LINQSL
Sbjct: 121 LENFRENEQLSK-YGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSW------- 233
NWQH C NP+PNPDI TLF+DH C ++ LP PS++
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFLDHSCSPSN---GARALTPVNLPVAAVARPSNFVPLGVHG 236
Query: 234 -NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGV 292
F S+ + +A +++P + S +++ SP + Q + + +P
Sbjct: 237 GPFQSNPAPAPNANALAGWMANPNPSSSV-----PSGVVA-ASPFPMQPSQVNELKHPRA 290
Query: 293 SLKNIPDYSPKSSLKKEMFQ----------------SFGETSFSDFPKTVAQTLIEGSSS 336
++ +S+ +++ + S S D P+ V T+ +GS
Sbjct: 291 PSNSLGLMDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVV 350
Query: 337 PMSMDFHPVQHTLL--------LGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 388
+SMDFHP HTLL + LW+V S +K+ FK+W++ ACS++F+ ++V++P
Sbjct: 351 -ISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPS 409
Query: 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQI 448
+SV RV WSPDG+LLGV+++KH++ +YAY GSD RQ LEIDAHVG VNDLAF+ P KQ+
Sbjct: 410 ISVTRVAWSPDGNLLGVSFTKHLIHVYAYQ-GSDLRQHLEIDAHVGCVNDLAFAHPNKQM 468
Query: 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY 508
V+TCGDDK IKVWD ++G + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAWLY
Sbjct: 469 CVVTCGDDKLIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLY 527
Query: 509 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 568
D++G+RVDYDAPG CT M YSA+G RLFSCGTSKEG+SFLVEWNESEGA+KRTY G
Sbjct: 528 DNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLG--F 585
Query: 569 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 628
+ S VV FDT +++ LA G+D+ IK W+M+ LLT ++A GGLP PR+ FNK+G L
Sbjct: 586 RKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNL 645
Query: 629 LAV---------IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 679
LAV +AN + ++ L E+ S +A+ D K+S + +++ I
Sbjct: 646 LAVTTADNGFKILANTDGLRTLRAFEARSFEASKASID--MKVSTSAMASSISPAIGKIE 703
Query: 680 VSVNEDPKEDVKPEISVEAENKS----------EVEKPL----FARPSECQSLLLP-SKV 724
P +EA +++ + KPL P++C+ + +P SK
Sbjct: 704 HMDAGSPARPTPIPNGIEAMSRTMEKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKD 763
Query: 725 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 784
+K++RL Y N G + AL SNGV +W+W RN+ + +AT V P+ +QP G M
Sbjct: 764 SVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSG-LLM 822
Query: 785 VNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 844
ND + N + +VPC ALSKND+Y+ SA GG +SL+ +MTFK + T MPP P +T LAF+
Sbjct: 823 ANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFH 881
Query: 845 PHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV 904
P DNN+IAIGM+DS+I IYN R EV +KL+GH K +TGL FS ALNILVSSG DAQ+F
Sbjct: 882 PQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFF 941
Query: 905 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ 964
W D W + ++Q P G + +T +QFH DQ + L+ HET LAIY+A ++ C+ +
Sbjct: 942 WTADSWEKKKSSAIQLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDASKMECIHK 999
Query: 965 WFPISSV--PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL-RPTTSCL 1021
W P ++ PI+ A++SC+ ++V+ SF DG +++ +A +L ++CRI +AY+ +PT +
Sbjct: 1000 WVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSA 1059
Query: 1022 HVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAV 1061
++P I AHP +P Q AVGL++G V VIEP+E W V
Sbjct: 1060 PIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGV 1099
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 988 bits (2554), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/1129 (46%), Positives = 706/1129 (62%), Gaps = 83/1129 (7%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL EE F ES H LE+ES F+F+ K+F++ +L G+W+DVE YLS F
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD + AKA+ IL +DL+ F+ NEEL+KE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L + R++E LSKY GD +AR M+ ELK++IEANP+ + KL FP+++ RLR LINQSL
Sbjct: 121 LQNFRENEQLSKY-GDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSW------- 233
NWQH C NP+PNPDI TLF DH C L + + P T P+++
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQ---PVTTLTKPAAYPSLGPHV 236
Query: 234 ------------NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILN 281
+S M S S V ++ P M +P++ + IL
Sbjct: 237 PFPPGPAAANAGALASWMAAASGASAVQAAVVTP----ALMPQPQNQ--------MSILK 284
Query: 282 EQASTVTYPGVSLKNIPDYS------PKSSLKKEMFQSFGET---SFSDFPKTVAQTLIE 332
+ PG+ PD+ P S+++ + + + S D P A L +
Sbjct: 285 RPRTPPATPGIVDYQNPDHELMKRLRPAPSVEEVTYPAPRQQAPWSLEDLPTKAALALHQ 344
Query: 333 GSSSPMSMDFHPVQHTLLL--------GLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV 384
GS+ SM+F+P+Q+TLLL LW++ + ++L R FK+WD+ CS F+ +
Sbjct: 345 GSTV-TSMEFYPMQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIA 403
Query: 385 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 444
++ +SV RV WSPDG+ +GVA++KH++QLYA+ G +D RQ EIDAHVG VNDLAF+ P
Sbjct: 404 KETPISVTRVAWSPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANP 463
Query: 445 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK 504
+Q+ VITCGDDK IKVWD V+G + ++FEGH APVYS+CPH KENI FIFS ++DGKIK
Sbjct: 464 NRQLCVITCGDDKLIKVWD-VSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIK 522
Query: 505 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 564
AWLYD+LG+RVDYDAPG CTRM YSA+G RLFSCGTSK+G+SFLVEWNESEG+IKRTY+
Sbjct: 523 AWLYDNLGSRVDYDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYK 582
Query: 565 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 624
+ Q VV FDT+K+ LA G+D IK WDMN + +LT+ DA GGLP P + FNK
Sbjct: 583 --EFQKKLAGVVQFDTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNK 640
Query: 625 NGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 683
+G LLAV +N KIL P S+ A + + V+ V GA +A+ + V
Sbjct: 641 DGNLLAVTTADNGFKILANPAGFRSLRAMETPASETMRTPVD-FKAVPGAPVASVNCKVE 699
Query: 684 E-------------DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV-KANKI 729
DP K I + + PS+C LP + K+
Sbjct: 700 RGSPVRHSQMLNGVDPS---KSRIDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKV 756
Query: 730 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 789
+L Y N G I AL SNG+ +W+W N+ S +AT V P+ +QP G M ND +
Sbjct: 757 VQLLYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSG-LLMTNDVS 815
Query: 790 DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 849
N + A PC ALSKND+Y+ SA+GG +SL+ +MTFK + T MPP P +T LAF+P DNN
Sbjct: 816 GVNLENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNN 875
Query: 850 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 909
VIAIGM+DSTI IYN R EV SKL+GH KR+TGL FS ALNILVSSG DAQI W +D
Sbjct: 876 VIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDT 935
Query: 910 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS 969
W + ++Q P G A +T +QFH DQ R L+VHET LA+++A ++ C++QW P
Sbjct: 936 WEKRKSVAIQMPAG--KAANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQD 993
Query: 970 SV--PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1027
S+ PIS A ++C+ ++++T+F DG + + +A +L ++CRI +AYL L P
Sbjct: 994 SLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQGNQGLS--PLV 1051
Query: 1028 IAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTS 1076
+AAHP P QFAVGL +G V ++EP E W ++PP E + + P++TS
Sbjct: 1052 VAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAI-NSPSTTS 1099
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 146/323 (45%), Gaps = 36/323 (11%)
Query: 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDI--GACSMLFKTA 382
T QTL SS +S+ F P + G SG K K+WD G C T
Sbjct: 958 TCTQTLEGHGSSVLSVAFSPDGQRVASG-----SGDK----TIKIWDTASGTC-----TQ 1003
Query: 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS 442
+ G SV V +SPDG + ++++ G+ Q LE H G V + FS
Sbjct: 1004 TLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGT-CTQTLE--GHGGWVQSVVFS 1060
Query: 443 APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC--PHAKENIHFIFSISVD 500
++++ + DD TIK+WDAV+G+ T + EGHG V+S+ P + + S S+D
Sbjct: 1061 PDGQRVA--SGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQR----VASGSID 1114
Query: 501 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560
G IK W S + G +A+S +G+R+ S + + W+ + G
Sbjct: 1115 GTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRV----ASGSIDGTIKIWDAASGTCT 1170
Query: 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 620
+T +G V V F ++ + D IKIWD T++ GG ++ +
Sbjct: 1171 QTLEG---HGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHGGWVQS--V 1225
Query: 621 CFNKNGTLLAVIANENRIKILET 643
F+ +G +A +++N IKI +T
Sbjct: 1226 AFSPDGQRVASGSSDNTIKIWDT 1248
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 136/614 (22%), Positives = 239/614 (38%), Gaps = 88/614 (14%)
Query: 353 LWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 412
LWD++SGQ C FK R V VV+SP+ +L S V
Sbjct: 932 LWDISSGQ--------------CLKTFKGHTSR-----VRSVVFSPNSLMLASGSSDQTV 972
Query: 413 QLYAYHGGSDARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 471
+L+ G + L I H G V +AF+ ++ T D+T+++WD + Y
Sbjct: 973 RLWDISSG----ECLYIFQGHTGWVYSVAFNLDGSMLA--TGSGDQTVRLWDISSSQCFY 1026
Query: 472 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTR-MAY 529
F+GH + V S+ + + + S S D ++ W D Y G C R + +
Sbjct: 1027 IFQGHTSCVRSVVFSSDGAM--LASGSDDQTVRLW--DISSGNCLYTLQGHTSCVRSVVF 1082
Query: 530 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 589
S +G L S G + + W+ S G T QG + V + F +
Sbjct: 1083 SPDGAMLASGGD----DQIVRLWDISSGNCLYTLQGYT---SWVRFLVFSPNGVTLANGS 1135
Query: 590 DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 649
D ++++WD++ + L T+ G + F+ +G LA + + +++ + S +
Sbjct: 1136 SDQIVRLWDISSKKCLYTLQ--GHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCL 1193
Query: 650 DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV----------------KPE 693
+ + + NP + +G ++ +V + E P+
Sbjct: 1194 YILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPD 1253
Query: 694 ISVEAENKSEVEKPLF-ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 752
S+ A S+ L+ S+C L + N ++ + +N G + + + + +
Sbjct: 1254 GSMLASGSSDKTVRLWDISSSKC---LHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRL 1310
Query: 753 WR---------------WPRN-----DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 792
W W + D T+ + RL+ G T
Sbjct: 1311 WEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLY----TFLG 1366
Query: 793 SQEAVPCFALSKNDAYLFSASGG-VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI 851
V S + A L S SG + L+ + + K + T+ + S+ F+P D ++
Sbjct: 1367 HTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSP-DGTLL 1425
Query: 852 AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GW 910
A G DD T+ ++N S E + L GH V + FS IL S D I +WDV G
Sbjct: 1426 ASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETIKLWDVKTGE 1485
Query: 911 GIQTCRSLQTPDGV 924
I+T +S + +G+
Sbjct: 1486 CIKTLKSEKIYEGM 1499
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 118/545 (21%), Positives = 224/545 (41%), Gaps = 35/545 (6%)
Query: 366 NFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 425
+ +VW++ + +L + R V VV+SPDG +L + V+L++ G +
Sbjct: 665 HVRVWEVKSGKLLL---ICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIK- 720
Query: 426 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 485
+ H V +AF + ++ + DKTIK+WD G+ + GH V C
Sbjct: 721 --TLTGHEHEVFSVAFHPDGETLA--SASGDKTIKLWDIQDGTCLQTLTGHTDWVR--CV 774
Query: 486 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-MAYSANGRRLFSCGTSKE 544
+ + + S + D IK W S G + G R +A+SA+G+ L S
Sbjct: 775 AFSPDGNTLASSAADHTIKLWDV-SQGKCLRTLKSHTGWVRSVAFSADGQTL----ASGS 829
Query: 545 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 604
G+ + WN G +TY G NSV + + +++ D IK+WD
Sbjct: 830 GDRTIKIWNYHTGECLKTYIG---HTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHIC 886
Query: 605 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 664
+ T+ G E + F+ +G LA ++ + +++ + A +D ++
Sbjct: 887 IKTLH--GHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAF 944
Query: 665 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 724
+P + +G + +V + + + E ++ + P + Q+L S
Sbjct: 945 SPDRQILASGSNDKTVKLWDWQTGKYISSL----EGHTDFIYGIAFSP-DSQTLASASTD 999
Query: 725 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 784
+ ++ ++ Q I ++ V+ + P+ + + A V +L+ G
Sbjct: 1000 SSVRLWNISTGQCFQ-ILLEHTDWVYAVVFHPQGKIIATGSADCTV--KLWNISTGQCL- 1055
Query: 785 VNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIVMTFKTILTIMPPSPTATSLAF 843
T S + + A S + L SAS + L+ T + + + S S F
Sbjct: 1056 ---KTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIF 1112
Query: 844 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 903
+P + +IA D T+ I++ + + + L GH+ V + FS IL S+ D +
Sbjct: 1113 SP-NGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVR 1171
Query: 904 VWDVD 908
+WDV+
Sbjct: 1172 IWDVN 1176
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 123/293 (41%), Gaps = 40/293 (13%)
Query: 350 LLGLWDVNSGQKLF-IRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 408
L+ +WDV SG +L + W V V +SPDG+LL
Sbjct: 482 LIHVWDVASGDELHTLEGHTDW--------------------VRAVAFSPDGALLASGSD 521
Query: 409 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTG 467
V+L+ + A ++ + H V D+AFS S++ G D T ++W+ TG
Sbjct: 522 DATVRLWDV---AAAEERAVFEGHTHYVLDIAFS---PDGSMVASGSRDGTARLWNVATG 575
Query: 468 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 527
+ +GH VY++ + + S S DG I+ W + R AP +
Sbjct: 576 TEHAVLKGHTDYVYAVA--FSPDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSL 633
Query: 528 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 587
A+S +G L +S + W+ + G T++G + V V F + +
Sbjct: 634 AFSPDGSMLVHG-----SDSTVHLWDVASGEALHTFEG---HTDWVRAVAFSPDGALLAS 685
Query: 588 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 640
DD I++WD+ + TT++ G P + + F+ GT LA + + I+I
Sbjct: 686 GSDDRTIRLWDVAAQEEHTTLE-GHTEPVH-SVAFHPEGTTLASASEDGTIRI 736
|
May play a regulatory role during the complex growth cycle and in secondary metabolite production. Thermomonospora curvata (taxid: 2020) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 142/630 (22%), Positives = 254/630 (40%), Gaps = 128/630 (20%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+V V +SPDG + S ++L+ G+ + I H VN++ FS K ++
Sbjct: 1115 AVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLK---TITGHEQTVNNVYFSPDGKNLA 1171
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAW- 506
+ D +IK+WD +G + GH A V ++ P + I + S D +K W
Sbjct: 1172 --SASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQT----IAAGSEDKTVKLWH 1225
Query: 507 -----LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 561
L +L D+ +++S +G+ L S K + W ++G + +
Sbjct: 1226 RQDGKLLKTLNGHQDW------VNSLSFSPDGKTLASASADKT----IKLWRIADGKLVK 1275
Query: 562 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 621
T +G ++SV V+F + I +A D+ IK+W+ + ++L T GG+ +
Sbjct: 1276 TLKG---HNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYA---VN 1329
Query: 622 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI---STVTGAGIANG 678
F + ++A + +N I++ + P + ++ VL+ N +V+ + S + AG A+G
Sbjct: 1330 FLPDSNIIASASLDNTIRLWQRPLISPLE---VLAGNSGVYAVSFLHDGSIIATAG-ADG 1385
Query: 679 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL--LPSKVKANKISRLTYNN 736
++ + S+ SLL LP
Sbjct: 1386 NIQLWH----------------------------SQDGSLLKTLP--------------- 1402
Query: 737 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 796
G +AI+ ++ P+ DL S A V ++++ R G D+
Sbjct: 1403 GNKAIYGISFT--------PQGDLIASANADKTV--KIWRVRDGKALKTLIGHDNE---- 1448
Query: 797 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 855
V S + L SAS + L+ V K T+ + ++F+P D +IA
Sbjct: 1449 VNKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVFWVSFSP-DGKIIASAS 1507
Query: 856 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV-DGWGIQT 914
D TI ++++ S +I L H+ V + F+ ++L S+ D + +W DG + T
Sbjct: 1508 ADKTIRLWDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWRSHDGHLLHT 1567
Query: 915 --------CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF 966
S +PDG + SE D+T + + HL LT L
Sbjct: 1568 FSGHSNVVYSSSFSPDGRYIASASE-------DKTVKIWQIDGHL-------LTTL---- 1609
Query: 967 PISSVPISQATFSCDCRMVFTSFVDGTLSI 996
P + A FS D + + + +D T I
Sbjct: 1610 PQHQAGVMSAIFSPDGKTLISGSLDTTTKI 1639
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1084 | ||||||
| 224141931 | 1109 | predicted protein [Populus trichocarpa] | 0.975 | 0.953 | 0.581 | 0.0 | |
| 356550630 | 1132 | PREDICTED: topless-related protein 1-lik | 0.958 | 0.917 | 0.550 | 0.0 | |
| 357455305 | 1149 | WD repeat-containing protein, putative [ | 0.959 | 0.905 | 0.545 | 0.0 | |
| 357455301 | 1134 | WD repeat-containing protein, putative [ | 0.959 | 0.917 | 0.545 | 0.0 | |
| 357455303 | 1112 | WD repeat-containing protein, putative [ | 0.959 | 0.935 | 0.550 | 0.0 | |
| 356526242 | 1133 | PREDICTED: protein TOPLESS-like [Glycine | 0.957 | 0.916 | 0.546 | 0.0 | |
| 357458875 | 1138 | WD repeat-containing protein, putative [ | 0.960 | 0.914 | 0.547 | 0.0 | |
| 356554802 | 1136 | PREDICTED: topless-related protein 1-lik | 0.969 | 0.925 | 0.544 | 0.0 | |
| 24461849 | 1127 | CTV.2 [Citrus trifoliata] | 0.954 | 0.918 | 0.546 | 0.0 | |
| 297839887 | 1120 | hypothetical protein ARALYDRAFT_895943 [ | 0.956 | 0.925 | 0.540 | 0.0 |
| >gi|224141931|ref|XP_002324314.1| predicted protein [Populus trichocarpa] gi|222865748|gb|EEF02879.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1199 bits (3103), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 641/1103 (58%), Positives = 779/1103 (70%), Gaps = 46/1103 (4%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
M+ L KDLV LI QFL+EEGF E+A MLERES +YF MKFFEDMI G W++ E+YLS F
Sbjct: 1 MAALCKDLVLLISQFLDEEGFKETARMLERESGYYFSMKFFEDMIRSGNWDEAERYLSCF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TK+DDNRYSTKIYFEIRKQ F E LD + +KAL+IL KDLK FAP NEEL KE+ LLT
Sbjct: 61 TKLDDNRYSTKIYFEIRKQKFLEVLDNDERSKALDILMKDLKAFAPDNEELLKEMTLLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++IRDHE LS Y DA SARK MM+ELK++IEANP+L+ KL+FP+I RLRRLINQSL
Sbjct: 121 LNNIRDHESLS-MYSDAESARKVMMVELKKVIEANPLLRDKLEFPNIANHRLRRLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQLQETD---FSGQSSESNALPPQTTQ----SPSSW 233
NWQH+HCA PQPNPDI TLFVDH+C +D FS +S+SN LP QTT + S+
Sbjct: 180 NWQHMHCAYPQPNPDIRTLFVDHICVPIPSDDHLFSA-ASDSNPLPSQTTSMLVSTSSAS 238
Query: 234 NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILS-------EKSPVRILNEQAST 286
N +SS S++S ALSL PTN + E +LS + + +L E +T
Sbjct: 239 NSTSSSEAHSSISSEALSLGVPTNIGSFIVVIEKKLLLSLTIYSMFVAAMIEVL-EDNTT 297
Query: 287 VTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS-----DFPKTVAQTLIEGSSSPMSMD 341
V G+ I + S+ +F F S D PK V + L EGSS P SMD
Sbjct: 298 VNDSGIPKNRIVNLKRPSNEASLIFHFFLLKHCSVNISDDLPKNVFRILNEGSS-PTSMD 356
Query: 342 FHPVQHTLLL--------GLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 393
FHP + T+LL GLW+V+SG+ L RNFKVWDI ACSM+FK L++DP VSVNR
Sbjct: 357 FHPEKQTVLLVGTTVGDIGLWEVSSGESLLSRNFKVWDIAACSMMFKATLLKDPSVSVNR 416
Query: 394 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 453
V WSP+G L GVAYSKH+VQ+Y+Y+ DARQQLEIDAHVG VNDL FSAP KQ+ VITC
Sbjct: 417 VAWSPEGGLFGVAYSKHLVQIYSYNEAKDARQQLEIDAHVGGVNDLTFSAPEKQLLVITC 476
Query: 454 GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA 513
GDDK +K WDA G + Y+FEGH APVYSLCP++K N+HF+F+ SV+G IK WLYD+LGA
Sbjct: 477 GDDKIVKAWDATDGVKMYTFEGHDAPVYSLCPYSKGNVHFVFATSVNGNIKVWLYDNLGA 536
Query: 514 RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 573
RVDYDAPGLGCT MAYS + RRLFSCGTS GESFLVEW++SEGAIKRTY G LQ NS
Sbjct: 537 RVDYDAPGLGCTSMAYSGD-RRLFSCGTSGSGESFLVEWDDSEGAIKRTYLG--LQKNSS 593
Query: 574 SVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 633
SVV FD K+Q+LAAGD+HVIKIWDMNK++L TTIDA GGLP NP + FNK GTLLAV A
Sbjct: 594 SVVQFDIMKNQVLAAGDEHVIKIWDMNKIELFTTIDAEGGLPANPCVRFNKEGTLLAVSA 653
Query: 634 NENRIKILETPES-NSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVS------VNED 685
N+N+IKIL S S+ L D+ R +S IS A A+ +V+ +
Sbjct: 654 NDNKIKILAKDGSLQSLHTTENCLDDDFRLVS-EAISKGACAQDADEAVAKQCFNLLQNG 712
Query: 686 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 745
+ VK +I+ + PS+CQ L LPS +KANKISRL YNN G +I AL
Sbjct: 713 NLKAVKSKITGKDTKSKSGRLIELNSPSQCQILRLPSHMKANKISRLIYNNAGNSILALT 772
Query: 746 SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 805
SN HL W+WP+ND LS A KV P+L+QPR M ND T SN +E VPCFALS+N
Sbjct: 773 SNATHLYWKWPQNDFDLSDTAAAKVSPQLWQPRSYSGLMTNDLTGSNPEETVPCFALSRN 832
Query: 806 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 865
D+YL S+SGG ISLY ++ FKT+L+IM P P AT +AF+P DNN++AIG D+STILIYN
Sbjct: 833 DSYLMSSSGGRISLYNLLKFKTMLSIMQPPPAATCIAFHPQDNNILAIGRDNSTILIYNV 892
Query: 866 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM 925
RS++VI+ LEGHSKRV+GL FS+ LN+LVSSG DAQIFVW+V+GW Q LQ PDG +
Sbjct: 893 RSAKVITILEGHSKRVSGLAFSNDLNLLVSSGADAQIFVWNVEGWYKQRSTFLQIPDGRI 952
Query: 926 TLAPS-ETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCR 983
+ S +THIQFH++QT FL VHETHLAIYEA +L C+KQW P + PIS ATFSCD +
Sbjct: 953 PFSLSTDTHIQFHQNQTEFLSVHETHLAIYEARKLECVKQWIPGDFATPISHATFSCDGQ 1012
Query: 984 MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1043
MV+ SF+DG +SI +AS+ ++ C+I TAYL PT+S L VYP AIAAHP +P QFAVGLT
Sbjct: 1013 MVYASFLDGLVSIFDASDFQLYCQINPTAYLFPTSS-LGVYPIAIAAHPQEPNQFAVGLT 1071
Query: 1044 NGEVYVIEPNEPGDTWAVLPPDE 1066
+G V V EP W++L DE
Sbjct: 1072 DGGVIVFEPPISAGKWSMLTADE 1094
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550630|ref|XP_003543688.1| PREDICTED: topless-related protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1196 bits (3094), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/1138 (55%), Positives = 780/1138 (68%), Gaps = 99/1138 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPF 239
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
Q T +P + W + + + AVS A+ L P+ A ++D P D
Sbjct: 240 QPTPAPVPTPLAGWMSNPTTVAHPAVSGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGD 299
Query: 268 SDILSEKS-PVRILNE-----QASTVTYPGVSLK---NIPDYSPKSSLKKEMFQSFGETS 318
SD +S+++ P+ + +E + T+PG N PD
Sbjct: 300 SDHVSKRTRPIGMSDEVNLPVNVLSATFPGHGHGQAFNAPD------------------- 340
Query: 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLL--------GLWDVNSGQKLFIRNFKVW 370
D PKT ++L +GSS PMSMDFHPVQ TLLL LW+V S ++L +RNFKVW
Sbjct: 341 --DLPKTAMRSLNQGSS-PMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVW 397
Query: 371 DIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID 430
D+ ACSM F+ ALV+DPGVSVNRV+WSPDG+L GVAYS+HIVQ+Y+YHGG D Q LEID
Sbjct: 398 DLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDVGQHLEID 457
Query: 431 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 490
AHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG++ Y+FEGH APVYS+CPH KEN
Sbjct: 458 AHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSICPHYKEN 517
Query: 491 IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 550
I FIFS ++DGKIKAWLYD+LG+RVDY+APG CT MAYSA+G RLFSCGTSKEGES +V
Sbjct: 518 IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKEGESSIV 577
Query: 551 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 610
EWNESEGA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+DA
Sbjct: 578 EWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDA 635
Query: 611 GGGLPENPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKL 662
GGLP +PRI FNK+G LLAV ANEN IKIL + NS+ S+ + K
Sbjct: 636 DGGLPASPRIRFNKDGALLAVSANENGIKILANADGIRLLRTLENSLYDTSRTSEAMTKP 695
Query: 663 SVNPISTVTG----------AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLF 709
++NPIS A ++N D + DVKP IS E+ +KS++ K
Sbjct: 696 TINPISAAAAAATSAALAERASSVVAITAMNGDARNLGDVKPRISEESNDKSKIWKLTEI 755
Query: 710 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 769
PS+C+SL LP V+ NKISRL Y N G AI ALASN +HL+W+W RND + +AT
Sbjct: 756 NEPSQCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTGKATAS 815
Query: 770 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL 829
V P+L+QP G M ND TD+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 816 VQPQLWQPSSG-ILMTNDITDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMT 874
Query: 830 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA 889
T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS
Sbjct: 875 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHV 934
Query: 890 LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 949
LN+LVSSG DAQI VW+ DGW Q R LQ P G A ++T +QFH+DQ RFL+VHET
Sbjct: 935 LNVLVSSGADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHET 994
Query: 950 HLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1008
LAIYEA +L CLKQWFP SS PIS ATFSCD ++++ SF+D T+ + SNL ++CRI
Sbjct: 995 QLAIYEATKLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVCVLSVSNLRLRCRI 1054
Query: 1009 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1066
+AYL + S +V P IAAHP +P QFAVGL++G V+V EP+E W V PP E
Sbjct: 1055 NPSAYLSASVSS-NVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPHESEGKWGVPPPIE 1111
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455305|ref|XP_003597933.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486981|gb|AES68184.1| WD repeat-containing protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1181 bits (3055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 621/1139 (54%), Positives = 774/1139 (67%), Gaps = 99/1139 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 16 MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 75
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+ NEELFKE+ QLLT
Sbjct: 76 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 135
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSK YGD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 136 LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 194
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G + PP
Sbjct: 195 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 254
Query: 225 QTTQSPSSWNFSSSMLTDSAVSFVALSL---------------------SDPTNKAVTMD 263
Q T +P + M + V+ ++S + PTN +V D
Sbjct: 255 QPTPAPVPMPLAGWMSNPTPVAHPSVSGGGAIGLGVGGPSMPAALKHPRTPPTNPSV--D 312
Query: 264 RPE-DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316
P DSD +S+++ P+ + +E + T+PG Q+F
Sbjct: 313 YPSGDSDHISKRTRPIGMSDEGNLPVNVLSATFPG----------------HGHGQAF-- 354
Query: 317 TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLL--------GLWDVNSGQKLFIRNFK 368
S D PKTV +TL +G SSPMSMDFHPVQ TLLL GLW++ S ++L +RNFK
Sbjct: 355 NSPDDLPKTVLRTLNQG-SSPMSMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFK 413
Query: 369 VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE 428
VWD+ ACSM F+ ALV+DP VSVNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LE
Sbjct: 414 VWDLSACSMPFQAALVKDPAVSVNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLE 473
Query: 429 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 488
IDAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH K
Sbjct: 474 IDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYK 533
Query: 489 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 548
ENI FIFS ++DGKIKAWLYD+LG+RVDYDAPG CT MAYSA+G RLFSCGTSK+GES
Sbjct: 534 ENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESS 593
Query: 549 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 608
+VEWNESEGA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+
Sbjct: 594 IVEWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTV 651
Query: 609 DAGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNL 659
DA GGLP +PRI FNK G+LLAV ANEN IKI L + E++S DA+ S+ +
Sbjct: 652 DADGGLPASPRIRFNKEGSLLAVSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAM 710
Query: 660 RKLSVNPI--------STVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PL 708
K +NP+ + + A +N D + D+KP IS E+ +KS++ K
Sbjct: 711 TKPIINPMSVATAATSAALERASSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTE 770
Query: 709 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 768
PS C+SL LP + KISRL Y N G AI ALASN +HL+W+W RND S +AT
Sbjct: 771 INEPSHCRSLKLPENARVTKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATA 830
Query: 769 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 828
VPP+L+QP G M ND D+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 831 SVPPQLWQPSSG-ILMTNDINDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 889
Query: 829 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 888
T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS
Sbjct: 890 TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 949
Query: 889 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 948
LN+LVSSG D QIFVW+ DGW Q R LQ P G A ++T +QFH+DQ RFL+VHE
Sbjct: 950 VLNVLVSSGADGQIFVWNTDGWEKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHE 1009
Query: 949 THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1007
T LAIYEA +L CLKQWFP ++ PIS ATFSCD ++F SF+D T+ + ASNL ++CR
Sbjct: 1010 TQLAIYEATKLECLKQWFPRDAAAPISHATFSCDSNLIFASFLDATICVFSASNLRLRCR 1069
Query: 1008 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1066
I +AYL S ++ P IAAHP +P QFAVGL++G V+V EP E W V PP E
Sbjct: 1070 INPSAYLSANVSSSNIQPLVIAAHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1128
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455301|ref|XP_003597931.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486979|gb|AES68182.1| WD repeat-containing protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1181 bits (3054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 621/1139 (54%), Positives = 774/1139 (67%), Gaps = 99/1139 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSK YGD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G + PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 239
Query: 225 QTTQSPSSWNFSSSMLTDSAVSFVALSL---------------------SDPTNKAVTMD 263
Q T +P + M + V+ ++S + PTN +V D
Sbjct: 240 QPTPAPVPMPLAGWMSNPTPVAHPSVSGGGAIGLGVGGPSMPAALKHPRTPPTNPSV--D 297
Query: 264 RPE-DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316
P DSD +S+++ P+ + +E + T+PG Q+F
Sbjct: 298 YPSGDSDHISKRTRPIGMSDEGNLPVNVLSATFPG----------------HGHGQAF-- 339
Query: 317 TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLL--------GLWDVNSGQKLFIRNFK 368
S D PKTV +TL +G SSPMSMDFHPVQ TLLL GLW++ S ++L +RNFK
Sbjct: 340 NSPDDLPKTVLRTLNQG-SSPMSMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFK 398
Query: 369 VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE 428
VWD+ ACSM F+ ALV+DP VSVNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LE
Sbjct: 399 VWDLSACSMPFQAALVKDPAVSVNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLE 458
Query: 429 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 488
IDAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH K
Sbjct: 459 IDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYK 518
Query: 489 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 548
ENI FIFS ++DGKIKAWLYD+LG+RVDYDAPG CT MAYSA+G RLFSCGTSK+GES
Sbjct: 519 ENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESS 578
Query: 549 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 608
+VEWNESEGA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+
Sbjct: 579 IVEWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTV 636
Query: 609 DAGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNL 659
DA GGLP +PRI FNK G+LLAV ANEN IKI L + E++S DA+ S+ +
Sbjct: 637 DADGGLPASPRIRFNKEGSLLAVSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAM 695
Query: 660 RKLSVNPI--------STVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PL 708
K +NP+ + + A +N D + D+KP IS E+ +KS++ K
Sbjct: 696 TKPIINPMSVATAATSAALERASSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTE 755
Query: 709 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 768
PS C+SL LP + KISRL Y N G AI ALASN +HL+W+W RND S +AT
Sbjct: 756 INEPSHCRSLKLPENARVTKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATA 815
Query: 769 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 828
VPP+L+QP G M ND D+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 816 SVPPQLWQPSSG-ILMTNDINDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 874
Query: 829 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 888
T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS
Sbjct: 875 TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 934
Query: 889 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 948
LN+LVSSG D QIFVW+ DGW Q R LQ P G A ++T +QFH+DQ RFL+VHE
Sbjct: 935 VLNVLVSSGADGQIFVWNTDGWEKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHE 994
Query: 949 THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1007
T LAIYEA +L CLKQWFP ++ PIS ATFSCD ++F SF+D T+ + ASNL ++CR
Sbjct: 995 TQLAIYEATKLECLKQWFPRDAAAPISHATFSCDSNLIFASFLDATICVFSASNLRLRCR 1054
Query: 1008 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1066
I +AYL S ++ P IAAHP +P QFAVGL++G V+V EP E W V PP E
Sbjct: 1055 INPSAYLSANVSSSNIQPLVIAAHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1113
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455303|ref|XP_003597932.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486980|gb|AES68183.1| WD repeat-containing protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1179 bits (3051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 615/1117 (55%), Positives = 767/1117 (68%), Gaps = 77/1117 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSK YGD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G + PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 239
Query: 225 QTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKS-PVRILNE- 282
Q T +P + M + V+ S+S + + P D +S+++ P+ + +E
Sbjct: 240 QPTPAPVPMPLAGWMSNPTPVAHP--SVSGGGAIGLGVGGPSMPDHISKRTRPIGMSDEG 297
Query: 283 ----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPM 338
+ T+PG Q+F S D PKTV +TL +G SSPM
Sbjct: 298 NLPVNVLSATFPG----------------HGHGQAF--NSPDDLPKTVLRTLNQG-SSPM 338
Query: 339 SMDFHPVQHTLLL--------GLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 390
SMDFHPVQ TLLL GLW++ S ++L +RNFKVWD+ ACSM F+ ALV+DP VS
Sbjct: 339 SMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFKVWDLSACSMPFQAALVKDPAVS 398
Query: 391 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 450
VNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LEIDAHVG VNDLAFS P KQ+ V
Sbjct: 399 VNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCV 458
Query: 451 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 510
ITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD+
Sbjct: 459 ITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDN 518
Query: 511 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 570
LG+RVDYDAPG CT MAYSA+G RLFSCGTSK+GES +VEWNESEGA+KRTYQG + +
Sbjct: 519 LGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKR- 577
Query: 571 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 630
S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+DA GGLP +PRI FNK G+LLA
Sbjct: 578 -SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKEGSLLA 636
Query: 631 VIANENRIKI---------LETPESNSVDAAGVLSDNLRKLSVNPI--------STVTGA 673
V ANEN IKI L + E++S DA+ S+ + K +NP+ + + A
Sbjct: 637 VSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAMTKPIINPMSVATAATSAALERA 695
Query: 674 GIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKIS 730
+N D + D+KP IS E+ +KS++ K PS C+SL LP + KIS
Sbjct: 696 SSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTEINEPSHCRSLKLPENARVTKIS 755
Query: 731 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 790
RL Y N G AI ALASN +HL+W+W RND S +AT VPP+L+QP G M ND D
Sbjct: 756 RLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATASVPPQLWQPSSG-ILMTNDIND 814
Query: 791 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 850
+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+
Sbjct: 815 NNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNI 874
Query: 851 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 910
IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS LN+LVSSG D QIFVW+ DGW
Sbjct: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADGQIFVWNTDGW 934
Query: 911 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-S 969
Q R LQ P G A ++T +QFH+DQ RFL+VHET LAIYEA +L CLKQWFP +
Sbjct: 935 EKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHETQLAIYEATKLECLKQWFPRDA 994
Query: 970 SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1029
+ PIS ATFSCD ++F SF+D T+ + ASNL ++CRI +AYL S ++ P IA
Sbjct: 995 AAPISHATFSCDSNLIFASFLDATICVFSASNLRLRCRINPSAYLSANVSSSNIQPLVIA 1054
Query: 1030 AHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1066
AHP +P QFAVGL++G V+V EP E W V PP E
Sbjct: 1055 AHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1091
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526242|ref|XP_003531727.1| PREDICTED: protein TOPLESS-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1177 bits (3045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/1141 (54%), Positives = 780/1141 (68%), Gaps = 103/1141 (9%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGALPKAGGFPPLGAHGPF 239
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFV-ALSLSDPTNKAV-----------TMDRPE- 266
Q T +P + W + + + +AVS A+ L P+ A ++D P
Sbjct: 240 QPTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSMPAALKHPRTPPTNPSVDYPSG 299
Query: 267 DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS 320
DSD +++++ P+ I +E + T+PG + Q+F
Sbjct: 300 DSDHVAKRTRPMGISDEVNLPVNVLSATFPG---------------HGQHSQAFNAPD-- 342
Query: 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLL--------GLWDVNSGQKLFIRNFKVWDI 372
D PKTV +TL +GSS PMSMDFHP+Q +LLL LW+V S ++L RNFKVWD+
Sbjct: 343 DIPKTVVRTLNQGSS-PMSMDFHPMQQSLLLVGTHVGDIALWEVGSRERLVSRNFKVWDL 401
Query: 373 GACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH 432
ACSM F+ ALV+DPGVSVNRV+WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LEIDAH
Sbjct: 402 SACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEIRQHLEIDAH 461
Query: 433 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH 492
VG VNDLAFS P KQ+ VITCGDDKTIKVWDA +G++ Y+FEGH APVYS+CPH KENI
Sbjct: 462 VGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQ 521
Query: 493 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 552
FIFS ++DGKIKAWLYD+LG+RVDY+APG CT MAYSA+G RLFSCGTSK+GES +VEW
Sbjct: 522 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEW 581
Query: 553 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 612
NESEGA+KRTYQG + S+ VV FDT K++ LAAGDD IK WDM+ VQLLTT+DA G
Sbjct: 582 NESEGAVKRTYQG--FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADG 639
Query: 613 GLPENPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSV 664
GLP +PRI FNK+GTLLAV ANEN IKIL + NS+ A S+ L K ++
Sbjct: 640 GLPASPRIRFNKDGTLLAVSANENGIKILANGDGIRLLRTLENSLYEASRASEALTKPTI 699
Query: 665 NPI-----------------STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK- 706
NPI S V AG+ + ++ DVKP IS E+ +KS++ K
Sbjct: 700 NPISAAAAAATSAALAERASSVVAIAGMNGDTRNLG-----DVKPRISEESNDKSKIWKL 754
Query: 707 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 766
S+C+SL LP V+ KISRL Y N G AI ALASN +HL+W+W RN+ S +A
Sbjct: 755 TEINEQSQCRSLKLPENVRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKA 814
Query: 767 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK 826
T + P+L+QP G M ND DSN ++AVPCFALSKND+Y+ SASGG ISL+ +MTFK
Sbjct: 815 TATLQPQLWQPSSG-ILMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFK 873
Query: 827 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 886
T+ T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL F
Sbjct: 874 TMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAF 933
Query: 887 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 946
S LN+LVSSG DAQI VW+ DGW Q R LQ P G A S+T +QFH+DQ +FL+V
Sbjct: 934 SHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPPAQSDTRVQFHQDQIQFLVV 993
Query: 947 HETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1005
HET LAIYEA +L LKQWFP SS PIS ATFSCD ++VF SF+D T+ + ASNL ++
Sbjct: 994 HETQLAIYEATKLEGLKQWFPRDSSAPISYATFSCDSQLVFASFLDATICVFSASNLRLR 1053
Query: 1006 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1065
CRI ++YL P + ++ P IAAHP +P QFA+GL++G V+V EP E W V PP
Sbjct: 1054 CRINPSSYL-PASVSSNIQPLVIAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPI 1112
Query: 1066 E 1066
E
Sbjct: 1113 E 1113
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357458875|ref|XP_003599718.1| WD repeat-containing protein, putative [Medicago truncatula] gi|357468121|ref|XP_003604345.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355488766|gb|AES69969.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355505400|gb|AES86542.1| WD repeat-containing protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1173 bits (3034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 624/1140 (54%), Positives = 776/1140 (68%), Gaps = 99/1140 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPPQTTQSP- 230
NWQH C NP+PNPDI TLFVDH C + G ++ PP P
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANSPLLGSLPKAGGFPPLGAHGPF 239
Query: 231 -----------SSWNFSSSMLTDSAVSFV-ALSLSDPTNKAV-----------TMDRPE- 266
+ W + + + +AVS A+ L P+ ++D P
Sbjct: 240 QPNPAAVPTQLAGWMSNPTTVAHAAVSGAGAIGLGAPSMPGALKHPRTPPINPSVDYPSG 299
Query: 267 DSDILSEKS-PVRILNEQASTV-----TYPGVSLK---NIPDYSPKSSLKKEMFQSFGET 317
DSD +++++ P+ I +E V T+PG N PD P
Sbjct: 300 DSDHVAKRTRPMGITDEVNLPVNVLSGTFPGHGHSQAFNAPDDLP--------------- 344
Query: 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLL--------GLWDVNSGQKLFIRNFKV 369
PKTV +TL +GSS PMSMDFHPVQ +LLL LW+V S +KL RNFKV
Sbjct: 345 ----LPKTVTRTLNQGSS-PMSMDFHPVQQSLLLVGTNVGGIALWEVGSREKLVSRNFKV 399
Query: 370 WDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI 429
WD+ ACSM F+ ALV+DP VSVNRV+WSPDG+L GVAYS+HIVQ+Y+YH G D RQ LEI
Sbjct: 400 WDLSACSMPFQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHTGDDVRQHLEI 459
Query: 430 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 489
DAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDAV+G++ Y+FEGH APVYS+CPH KE
Sbjct: 460 DAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAVSGAKQYTFEGHEAPVYSVCPHYKE 519
Query: 490 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 549
NI FIFS ++DGKIKAWLYD+LG+RVDYDAPG CT MAYSA+G RLFSCGTSK+GES +
Sbjct: 520 NIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSI 579
Query: 550 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 609
VEWNESEGA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+D
Sbjct: 580 VEWNESEGAVKRTYQGFRKR--SMGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTTVD 637
Query: 610 AGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNLR 660
A GGLP +PRI FNK+GTLLAV AN+N IKI L T E+NS+ A S+ +
Sbjct: 638 ADGGLPASPRIRFNKDGTLLAVSANDNGIKIVANADGIRLLRTLENNSMYDASRASE-MA 696
Query: 661 KLSVNPISTVTG---------AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PL 708
K ++N +S+ A +N D + DVKP IS EA +KS++ K
Sbjct: 697 KPTINSMSSAAAATSAALAERASSVAAIAGMNGDTRSMGDVKPRISEEANDKSKIWKLTE 756
Query: 709 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 768
PS C+SL LP V+ NKISRL Y N G AI ALASN +HL+W+WPRN+ S +A
Sbjct: 757 INEPSHCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWPRNERNSSGKANA 816
Query: 769 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 828
VP +L+QP G M ND DSN +++VPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 817 SVPAQLWQPSSG-ILMTNDIADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 875
Query: 829 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 888
T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS
Sbjct: 876 TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 935
Query: 889 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 948
LN+LVSSG DAQI VW+ DGW Q R LQ P G A S+T +QFH+DQ +FL+VHE
Sbjct: 936 VLNVLVSSGADAQICVWNTDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHE 995
Query: 949 THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1007
T LAI+EA +L CLKQW P SS PIS ATFSCD ++++ SF+D T+ + ASNL ++CR
Sbjct: 996 TQLAIFEATKLECLKQWAPRDSSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCR 1055
Query: 1008 ILSTAYLRPTTSC-LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1066
I AYL + S +V P IAAHP + QFAVGL++G V+V EP E W V PP+E
Sbjct: 1056 INPPAYLPASVSSNSNVQPLVIAAHPHEANQFAVGLSDGGVHVFEPLESEGKWGVPPPNE 1115
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554802|ref|XP_003545731.1| PREDICTED: topless-related protein 1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1170 bits (3028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 615/1130 (54%), Positives = 768/1130 (67%), Gaps = 79/1130 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FE+ KQ + EALD HD +KA+ IL KDLK FA N+ELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEVMKQKYLEALDKHDRSKAVEILVKDLKVFATFNDELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY D SAR M++ELK++IEANP+ KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSKYC-DTKSARAIMLVELKKLIEANPLFHDKLQFPNLKSSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC-QLQETD--------FSGQSSESNALPPQTTQSP- 230
NWQH C NP+PNPDI TLFVDH C QL G ++ PP P
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQLNGAPAPSPANNLLLGSLPKAGGFPPLGAHGPF 239
Query: 231 -----------SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
+ W + + + VS A+ L P+ A ++D P D
Sbjct: 240 QPSPAPVPTPLAGWMSNPTTVAHPEVSGGAIGLGVPSIPAALKHPRTPPTYPSVDYPSGD 299
Query: 268 SDILSEKS-PVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV 326
SD +S+++ P+ + +E V + P Q+F D PKT
Sbjct: 300 SDHVSKRTRPMGMSDEVNLPVNVLSATF-------PGHGHGHGHGQAFNAP--DDLPKTA 350
Query: 327 AQTLIEGSSSPMSMDFHPVQHTLLL--------GLWDVNSGQKLFIRNFKVWDIGACSML 378
+TL +G SSPMSMDFHPVQ TLLL LW+V S ++L +RNFKVWD+ ACSM
Sbjct: 351 MRTLNQG-SSPMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMP 409
Query: 379 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 438
F+ ALV+DPGVSV RV+WSPDG+L GVAYS+HIVQ+Y+YH G D +Q LEIDAHVG VND
Sbjct: 410 FQAALVKDPGVSVYRVIWSPDGALFGVAYSRHIVQIYSYHSGDDVQQHLEIDAHVGGVND 469
Query: 439 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 498
LAFS P KQ+ VITCGDDKTIKVWDA TG++ Y+FEGH APVYS+CPH KENI FIFS +
Sbjct: 470 LAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTA 529
Query: 499 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 558
+DGKIKAWLYD+LG+RVDY+APG CT MAYSA+G RLFSCGTSK+ ES +VEWNESEGA
Sbjct: 530 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDAESSIVEWNESEGA 589
Query: 559 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 618
+KRTYQG + S+ V FDT K++ LAAGDD IK WDM+ +QLLTT+DA GGLP +P
Sbjct: 590 VKRTYQG--FRKRSLGFVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPGSP 647
Query: 619 RICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPISTV 670
RI FNK+G LLAV A EN IKIL + NS+ S+ + K ++NPIS
Sbjct: 648 RIRFNKDGALLAVSAKENGIKILANADGIRLLRTLENSLYDTSRTSEVMTKPTINPISAA 707
Query: 671 TGAGIAN----------GSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQS 717
A + G ++N D + DVKP IS E+ +KS++ K PS+C+S
Sbjct: 708 AAAATSAALGERALSVVGINAMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRS 767
Query: 718 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 777
L LP V+ NKISRL Y N G AI ALASN +HL+W+W RND + +A+ V P+L+QP
Sbjct: 768 LKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTVKASASVQPQLWQP 827
Query: 778 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT 837
G M ND TDSN+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P
Sbjct: 828 SSG-ILMTNDITDSNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPA 886
Query: 838 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 897
A LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS LN+LVSSG
Sbjct: 887 ANFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSG 946
Query: 898 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 957
DAQI VW+ DGW Q R LQ P G A ++T +QFH+DQ RFL+VHET LAIYEA
Sbjct: 947 ADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEAT 1006
Query: 958 ELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1016
+L CLKQWFP SS PIS ATFSCD ++++ SF+D T+ + SNL +QCRI +AYL
Sbjct: 1007 KLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVCVFSVSNLRLQCRINPSAYLSA 1066
Query: 1017 TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1066
+ S +V P IAAHP +P QFAVGL++G V+V EP E W V PP E
Sbjct: 1067 SVSS-NVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIE 1115
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|24461849|gb|AAN62336.1|AF506028_3 CTV.2 [Citrus trifoliata] | Back alignment and taxonomy information |
|---|
Score = 1170 bits (3027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/1131 (54%), Positives = 775/1131 (68%), Gaps = 96/1131 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W+DVE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD AKA+ IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP++K N SL
Sbjct: 121 LENFRENEQLSKY-GDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK--------NSSL 171
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G ++ PP
Sbjct: 172 NWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPF 231
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPE------------- 266
Q T +P + W + +T AVS A+ L P+ A + P
Sbjct: 232 QPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 291
Query: 267 DSDILSEKS-PVRILNEQASTVTYPGVSLKNIP-DYSPKSSLKKEMFQSFGETSFSDFPK 324
DSD LS+++ P+ I +E N+P + P S Q+F ++ D PK
Sbjct: 292 DSDHLSKRTRPIGISDE------------INLPVNVLPVSFTGHSHSQAF--SAPEDLPK 337
Query: 325 TVAQTLIEGSSSPMSMDFHPVQHTLLL--------GLWDVNSGQKLFIRNFKVWDIGACS 376
TV +TL +GSS PMSMDFHPVQ TLLL GLW+V S ++L +RNFKVWD+GACS
Sbjct: 338 TVTRTLNQGSS-PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS 396
Query: 377 MLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNV 436
M + ALV+DPGVSVNRV+WSPDGSL GVAYS+HIVQ+Y+YHGG + RQ LEIDAHVG V
Sbjct: 397 MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 456
Query: 437 NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFS 496
ND+AFS P KQ+ VITCGDDKTIKVWDA G++ Y FEGH APVYS+CPH KENI FIFS
Sbjct: 457 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFS 516
Query: 497 ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 556
++DGKIKAWLYD+LG+RVDY+APG CT MAYSA+G RLFSCGTSK+GESF+VEWNESE
Sbjct: 517 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESE 576
Query: 557 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 616
GA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ VQLLT+IDA GGLP
Sbjct: 577 GAVKRTYQGFRKR--SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA 634
Query: 617 NPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPIS 668
+PRI FNK+G LLAV N+N IKIL T + N A S+N K +++PIS
Sbjct: 635 SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPIS 693
Query: 669 -----TVTGAGIANGSVSVNEDPK--------EDVKPEISVEAENKSEVEK-PLFARPSE 714
T AG+A+ + S+ P DVKP I+ E+ +KS+V K + P++
Sbjct: 694 AAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 753
Query: 715 CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 774
C+SL LP ++A KISRL + N G AI ALASN +HL+W+W R + S +AT V P+L
Sbjct: 754 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL 813
Query: 775 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP 834
+QP G M ND TDSN +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP
Sbjct: 814 WQPPSG-IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP 872
Query: 835 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 894
P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GHSKR+TGL FS ALN+LV
Sbjct: 873 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 932
Query: 895 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 954
SSG D+Q+ VW DGW Q R LQ P G A S+T +QFH+DQ FL+VHET LAI+
Sbjct: 933 SSGADSQLCVWGSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 992
Query: 955 EAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1013
E +L C+KQW P SS PI+ ATFSCD ++V+ F+D T+ + A+NL+++CRI +AY
Sbjct: 993 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1052
Query: 1014 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPP 1064
L P +V+P IAAHP +P +FA+GL++G V+V EP E W V PP
Sbjct: 1053 L-PAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP 1102
|
Source: Citrus trifoliata Species: Citrus trifoliata Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839887|ref|XP_002887825.1| hypothetical protein ARALYDRAFT_895943 [Arabidopsis lyrata subsp. lyrata] gi|297333666|gb|EFH64084.1| hypothetical protein ARALYDRAFT_895943 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1169 bits (3024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/1126 (54%), Positives = 771/1126 (68%), Gaps = 89/1126 (7%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD KA+ IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP+++ RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQLQE---------TDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C+L G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAGGFPPLGAHGPF 239
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFVALSL-------------SDPTNKAVTMDRPE 266
Q T SP + W S S + AVS A++L + PTN AV D P
Sbjct: 240 QPTPSPVPTPLAGWMSSPSSVPHPAVSGGAIALGAPSIQAALKHPRTPPTNSAV--DYPS 297
Query: 267 -DSDILSEKS-PVRILNEQASTV-----TYPGVSLKN-----IPDYSPKSSLKKEMFQSF 314
DSD +S+++ P+ I +E + V T+PG + + +PD
Sbjct: 298 GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKVPD--------------- 342
Query: 315 GETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLL--------GLWDVNSGQKLFIRN 366
D PKTVA+TL +GSS PMSMDFHP++ TLLL GLW+V S ++L +
Sbjct: 343 ------DLPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKT 395
Query: 367 FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 426
FKVWD+ CSM + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ
Sbjct: 396 FKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQH 455
Query: 427 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 486
LEIDAHVG VND+AFS P KQ+ V TCGDDKTIKVWDA TG + ++FEGH APVYS+CPH
Sbjct: 456 LEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRHTFEGHEAPVYSICPH 515
Query: 487 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 546
KENI FIFS ++DGKIKAWLYD++G+RVDY+APG CT MAYSA+G RLFSCGTSK+GE
Sbjct: 516 YKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGE 575
Query: 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 606
SF+VEWNESEGA+KRTYQG S+ VV FDT K++ LAAGDD IK WDM+ +QLLT
Sbjct: 576 SFIVEWNESEGAVKRTYQG--FHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLT 633
Query: 607 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN 665
IDA GGL +PRI FNK G+LLAV AN+N IK++ + + LS K ++N
Sbjct: 634 AIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAIN 693
Query: 666 PISTVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPS 722
I +N D + DVKP I+ E+ +KS+V K PS+C+SL LP
Sbjct: 694 SIPVAERPASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTELGEPSQCRSLRLPE 753
Query: 723 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 782
++A KISRL + N G AI ALASN +HL+W+W RND + +AT VPP+ +QP G
Sbjct: 754 NMRATKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASVPPQQWQPASG-I 812
Query: 783 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLA 842
M ND ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LA
Sbjct: 813 LMTNDVVETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLA 872
Query: 843 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 902
F+P DNN+IAIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+
Sbjct: 873 FHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQL 932
Query: 903 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL 962
VW+ DGW Q + LQ P G T A S+T +QFH+DQ FL+VHET LAIYE +L C+
Sbjct: 933 CVWNTDGWEKQKSKVLQIPQGRSTSALSDTRVQFHQDQVHFLVVHETQLAIYETTKLECM 992
Query: 963 KQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1020
KQW P+ SS PI+ ATFSCD ++++TSF+D T+ + ++NL ++CR+ +AYL + S
Sbjct: 993 KQW-PVRESSAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSN 1051
Query: 1021 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1066
+V+P IAAHP + FAVGL++G V++ EP E W V PP E
Sbjct: 1052 SNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1084 | ||||||
| TAIR|locus:2198888 | 1120 | TPR1 "TOPLESS-related 1" [Arab | 0.733 | 0.709 | 0.551 | 2.1e-308 | |
| TAIR|locus:2036204 | 1131 | TPL "TOPLESS" [Arabidopsis tha | 0.789 | 0.756 | 0.529 | 1.9e-307 | |
| TAIR|locus:2086770 | 1131 | TPR2 "TOPLESS-related 2" [Arab | 0.354 | 0.339 | 0.518 | 2.3e-272 | |
| TAIR|locus:2040100 | 740 | AT2G25420 "AT2G25420" [Arabido | 0.323 | 0.474 | 0.361 | 7.8e-86 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.557 | 0.442 | 0.241 | 5.1e-18 | |
| MGI|MGI:1918511 | 476 | Poc1b "POC1 centriolar protein | 0.231 | 0.527 | 0.242 | 3.4e-14 | |
| UNIPROTKB|G3N3E5 | 308 | WDR5 "WD repeat-containing pro | 0.189 | 0.665 | 0.243 | 8.3e-14 | |
| TAIR|locus:2172432 | 523 | AT5G43920 "AT5G43920" [Arabido | 0.169 | 0.351 | 0.264 | 9.6e-14 | |
| FB|FBgn0040066 | 361 | wds "will die slowly" [Drosoph | 0.189 | 0.567 | 0.247 | 1.1e-13 | |
| UNIPROTKB|Q5M786 | 334 | wdr5 "WD repeat-containing pro | 0.189 | 0.613 | 0.243 | 1.1e-13 |
| TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2278 (807.0 bits), Expect = 2.1e-308, Sum P(2) = 2.1e-308
Identities = 456/827 (55%), Positives = 582/827 (70%)
Query: 255 PTNKAVTMDRPE-DSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQS 313
P+N AV D P DSD +S+++ ++++ S GV++ +P P + Q+
Sbjct: 288 PSNSAV--DYPSGDSDHVSKRTRPMGISDEVSL----GVNM--LPMTFPGQAHGHN--QT 337
Query: 314 FGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLL--------GLWDVNSGQKLFIR 365
F D PKTVA+TL +GSS PMSMDFHP++ TLLL GLW+V S ++L +
Sbjct: 338 FKAPD--DLPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQK 394
Query: 366 NFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 425
FKVWD+ CSM + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ
Sbjct: 395 TFKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQ 454
Query: 426 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 485
LEIDAHVG VND+AFS P KQ+ V TCGDDKTIKVWDA TG + Y+FEGH APVYS+CP
Sbjct: 455 HLEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICP 514
Query: 486 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 545
H KENI FIFS ++DGKIKAWLYD++G+RVDY+APG CT MAYSA+G RLFSCGTSK+G
Sbjct: 515 HYKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDG 574
Query: 546 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 605
ESF+VEWNESEGA+KRTYQG + S+ VV FDT K++ LAAGDD IK WDM+ +QLL
Sbjct: 575 ESFIVEWNESEGAVKRTYQGFHKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLL 632
Query: 606 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSV 664
T IDA GGL +PRI FNK G+LLAV AN+N IK++ + + LS K ++
Sbjct: 633 TAIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAI 692
Query: 665 NPISTVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEKPL-FARPSECQSLLLP 721
N I V +N D + DVKP I+ E+ +KS+V K PS+C+SL LP
Sbjct: 693 NSIPMVERPASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLP 752
Query: 722 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 781
++ KISRL + N G AI ALASN +HL+W+W RND + +AT +PP+ +QP G
Sbjct: 753 ENMRVTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGI 812
Query: 782 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL 841
M ND ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT L
Sbjct: 813 -LMTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 871
Query: 842 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 901
AF+P DNN+IAIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ
Sbjct: 872 AFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ 931
Query: 902 IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC 961
+ VW+ DGW Q + LQ P G T + S+T +QFH+DQ FL+VHET LAIYE +L C
Sbjct: 932 LCVWNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLEC 991
Query: 962 LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTS 1019
+KQW P+ S+ PI+ ATFSCD ++++TSF+D T+ + ++NL ++CR+ +AYL + S
Sbjct: 992 MKQW-PVRESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLS 1050
Query: 1020 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1066
+V+P IAAHP + FAVGL++G V++ EP E W V PP E
Sbjct: 1051 NSNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097
|
|
| TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2276 (806.3 bits), Expect = 1.9e-307, Sum P(2) = 1.9e-307
Identities = 474/895 (52%), Positives = 602/895 (67%)
Query: 223 PPQTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPV 277
P Q T SP + W S S + AVS A++L P+ A + P +
Sbjct: 238 PFQPTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYP 296
Query: 278 RILNEQASTVTYP-GVSLK-NIP-DYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGS 334
+E S T P G+S + N+ + P S + S + D PKTVA+TL +GS
Sbjct: 297 SADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGS 356
Query: 335 SSPMSMDFHPVQHTLLL--------GLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 386
S PMSMDFHP++ TLLL GLW+V S ++L + FKVWD+ CSM + ALV++
Sbjct: 357 S-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKE 415
Query: 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK 446
P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHVG VND++FS P K
Sbjct: 416 PVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNK 475
Query: 447 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506
Q+ VITCGDDKTIKVWDA TG + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAW
Sbjct: 476 QLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAW 535
Query: 507 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 566
LYD++G+RVDYDAPG CT MAYSA+G RLFSCGTSK+GESF+VEWNESEGA+KRTYQG
Sbjct: 536 LYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGF 595
Query: 567 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 626
+ S+ VV FDT K++ LAAGDD IK WDM+ VQLLT ID GGL +PRI FNK G
Sbjct: 596 HKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEG 653
Query: 627 TLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTV-----TGAGIANGSV 680
+LLAV NEN IKI+ + + +S K ++N I+ T AG A+ S
Sbjct: 654 SLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATSAGHADRSA 713
Query: 681 SV------NEDPKE--DVKPEISVEAENKSEVEKPL-FARPSECQSLLLPSKVKANKISR 731
+V N D + DVKP I+ E+ +KS++ K + PS+C+SL LP ++ KISR
Sbjct: 714 NVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKISR 773
Query: 732 LTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 791
L + N G AI ALASN +HL+W+W RN+ + +AT +PP+ +QP G M ND ++
Sbjct: 774 LIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGI-LMTNDVAET 832
Query: 792 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI 851
N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+I
Sbjct: 833 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII 892
Query: 852 AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 911
AIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ VW+ DGW
Sbjct: 893 AIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWE 952
Query: 912 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSV 971
Q + L P G APS+T +QFH+DQ FL+VHET LAIYE +L C+KQW S+
Sbjct: 953 KQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRESL 1012
Query: 972 -PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAA 1030
PI+ ATFSCD ++V+ SF+D T+ + ++NL ++CR+ +AYL + S +V+P IAA
Sbjct: 1013 APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAA 1072
Query: 1031 HPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE--IVGDQPTSTSEGDRAMD 1083
HP +P FAVGL++G V++ EP E W V PP E PT+ S G A D
Sbjct: 1073 HPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASASD 1127
|
|
| TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1043 (372.2 bits), Expect = 2.3e-272, Sum P(3) = 2.3e-272
Identities = 210/405 (51%), Positives = 282/405 (69%)
Query: 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLL-LG-------LWDVNSGQKLFIRNFKV 369
S D P+ V T+ +GS +SMDFHP HTLL +G LW+V S +K+ FK+
Sbjct: 332 SLDDLPRNVVSTIRQGSVV-ISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKI 390
Query: 370 WDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI 429
W++ ACS++F+ ++V++P +SV RV WSPDG+LLGV+++KH++ +YAY G SD RQ LEI
Sbjct: 391 WNMAACSVIFQGSIVKEPSISVTRVAWSPDGNLLGVSFTKHLIHVYAYQG-SDLRQHLEI 449
Query: 430 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 489
DAHVG VNDLAF+ P KQ+ V+TCGDDK IKVWD ++G + ++FEGH APVYS+CPH KE
Sbjct: 450 DAHVGCVNDLAFAHPNKQMCVVTCGDDKLIKVWD-LSGKKLFTFEGHEAPVYSICPHQKE 508
Query: 490 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 549
NI FIFS ++DGKIKAWLYD++G+RVDYDAPG CT M YSA+G RLFSCGTSKEG+SFL
Sbjct: 509 NIQFIFSTALDGKIKAWLYDNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFL 568
Query: 550 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 609
VEWNESEGA+KRTY G + + S VV FDT +++ LA G+D+ IK W+M+ LLT ++
Sbjct: 569 VEWNESEGALKRTYLGFRKK--SAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVE 626
Query: 610 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN-PI 667
A GGLP PR+ FNK+G LLAV +N KIL + ++ A S K S++ +
Sbjct: 627 AEGGLPNLPRLRFNKDGNLLAVTTADNGFKILANTDGLRTLRAFEARSFEASKASIDMKV 686
Query: 668 STVTGAGIANGSVSVNE--DPKEDVKPEI---SVEAENKSEVEKP 707
ST A + ++ E D +P +EA +++ +EKP
Sbjct: 687 STSAMASSISPAIGKIEHMDAGSPARPTPIPNGIEAMSRT-MEKP 730
|
|
| TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 570 (205.7 bits), Expect = 7.8e-86, Sum P(2) = 7.8e-86
Identities = 132/365 (36%), Positives = 198/365 (54%)
Query: 712 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP 771
PS+C +L+LP KI+RLTY+ G I ALA + H +W W + E
Sbjct: 375 PSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQNEFCKE-NVYPK 433
Query: 772 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI 831
PRL+QP+ G + M N+ S Q++ CFA+ +YLFS SGG I+++ + F+ + +
Sbjct: 434 PRLHQPQSG-KTMENEMATS-VQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNFEKVASF 489
Query: 832 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 891
P+P AT F P D ++A+G+DD +I I+ S +V KLEGH +++T L FS N
Sbjct: 490 GSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLAFSRCFN 547
Query: 892 ILVSSGGDAQIFVWDVDGWGIQTCR-SLQTPDGVMTLAPSE--THIQFHKDQTRFLLVHE 948
+LVSS D ++ +W W T + S + L + THIQF Q L+VH+
Sbjct: 548 VLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIELLVVHD 607
Query: 949 THLAIYEAEELTCLKQWFPISSVP-ISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1007
+ +YE L C QW P +S P I+ AT+S D +++ F G++ I ++ C+
Sbjct: 608 GWIGLYEVRTLDCRLQWIPDASDPAITSATYSSDGEIIYVGFRCGSIKIVDSKTFMTLCQ 667
Query: 1008 ILSTAYLRPTTS--CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1065
I T++ + +TS L VYP +AAHP P Q + GL+NG+V V++P G W P
Sbjct: 668 INLTSFTQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSGG-WGEAAPL 726
Query: 1066 EIVGD 1070
E GD
Sbjct: 727 EDNGD 731
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 273 (101.2 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
Identities = 168/697 (24%), Positives = 296/697 (42%)
Query: 300 YSPKSSLKKEMFQSFGETSFSDFPK-----TVAQTLIEGSSSPM-SMDFHPVQHTLLLGL 353
+SP+ S+ + +F ++ + +S PK + Q +E P+ S+ F P L+ G
Sbjct: 711 FSPEGSITRRIF-NYNLSGWSQLPKVEQTWSAEQQTLENHLGPVESVVFSPDGKQLVSGS 769
Query: 354 WDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 413
+D K+WD A L +T L G +V + +SPDG LL + +
Sbjct: 770 YD---------DTVKIWD-PATGELLQT-LDGHSG-TVESLAFSPDGKLLASGSYDNTID 817
Query: 414 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 473
L+ G + Q E H ++ +AF+ K+++ + DD TIK+WD TG +
Sbjct: 818 LWDSATG-ELLQTFE--GHPHSIWSVAFAPDGKELA--SASDDSTIKIWDLATGELQQTL 872
Query: 474 EGHGAPVYSLC--PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTR-MAY 529
+ H V S+ P K + S S+D IK W + + G G + +A+
Sbjct: 873 DSHSQSVRSVAFSPDGK----LLASSSLDSTIKVW--NPATGELQQSLEGRSGWVKSVAF 926
Query: 530 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 589
S +G++L S G+ K WN + G + +T +G SV V F Q+ ++
Sbjct: 927 SPDGKKLAS-GSEKNTVKL---WNPATGELLQTLEG---HSQSVRSVAFSPDGKQLASSS 979
Query: 590 DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI--LETPE-- 645
D IK+W+ +L T G L + F+ +G L +++N IK+ L T E
Sbjct: 980 SDTTIKLWNSTTGELQQTFK-GHDLWIRA-VAFSPDGKHLVSGSDDNTIKLWDLATSELQ 1037
Query: 646 ------SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN-EDPKEDVK-----PE 693
S SV A D+ + S + ST+ A G + E + V+ P+
Sbjct: 1038 QSLEDHSRSVHAVAFSPDDKQLASSSLDSTIKLWDSATGELQRTLEGHSQGVRSVTFSPD 1097
Query: 694 ISVEAENKSEVEKPLFARP--SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 751
+ A N + L+ P E Q L +++ + + ++ G+ + + +
Sbjct: 1098 GKLLASNSYDGTIKLW-NPLTGELQQTLTG---RSDWVDSVAFSPDGKQLASGYYDSTIK 1153
Query: 752 MWRWPRNDLTLSTEA-TTKVPPRLYQP-----RHGPQFMVNDTTDSNSQEAVPCF----- 800
+W +L + E + ++ ++ P G D + E + F
Sbjct: 1154 LWDSATGELLQTLEGHSDRIQSVVFSPDGKLLASGSYDQTAKLWDPATGELLQIFEGHSK 1213
Query: 801 -----ALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG 854
A S + L S+S G I L+ +T + + T+ P +A S+AF+P N + ++
Sbjct: 1214 WVESVAFSPDGKLLASSSYGETIKLWDPVTGELLQTLNDPDESAGSVAFSPDGNRLASVD 1273
Query: 855 MDDSTILIYNARSSEVISKLEGHSKRV---TGLVFSDALNILVSSGGDAQIFVWDVDGWG 911
+ D+ I ++ + E++ L+GHSK V TG S L+ + + +I +W +
Sbjct: 1274 IFDTKI--WDPATGELLQALKGHSKWVWSRTGAGISIFLDQWLCLQ-EKRI-LWLPQSYQ 1329
Query: 912 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 948
C S+ DGV+ L S + F + RFL+ E
Sbjct: 1330 -PFCISVN--DGVLVLGHSSGRVSFIQGP-RFLIESE 1362
|
|
| MGI|MGI:1918511 Poc1b "POC1 centriolar protein homolog B (Chlamydomonas)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 64/264 (24%), Positives = 108/264 (40%)
Query: 419 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 478
G D + H + FS CKQI+ T D + +W +R Y + GH
Sbjct: 4 GLEDPILERSFKGHKAAITSADFSPNCKQIA--TASWDTFLMLWSLKPHARAYRYVGHKD 61
Query: 479 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 538
V SL + N+ + S S D ++ W+ D G ++ A + +SA+G+ L
Sbjct: 62 VVTSLQFSPQGNL--LASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLV- 118
Query: 539 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 598
T+ E +S V W+ +R L + V F I++ +D IKIWD
Sbjct: 119 --TASEDKSIKV-WSMFR---QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD 172
Query: 599 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN 658
Q + G + FN NGT +A +++ +KI + + + V S
Sbjct: 173 TTNKQCVNNFSDSVGFANF--VDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCG 230
Query: 659 LRKLSVNPISTVTGAGIANGSVSV 682
+ LS +P+ ++G+V +
Sbjct: 231 VNCLSFHPLGNSLVTASSDGTVKM 254
|
|
| UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 53/218 (24%), Positives = 103/218 (47%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 77 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 187
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 607
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 188 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225
|
|
| TAIR|locus:2172432 AT5G43920 "AT5G43920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 158 (60.7 bits), Expect = 9.6e-14, Sum P(3) = 9.6e-14
Identities = 54/204 (26%), Positives = 96/204 (47%)
Query: 7 DLVFLILQFLNEEGFTESAHMLERESRFYF---DMKFFEDMILDGKWEDVEQYLSSF--T 61
+ + +++Q L GF SA LE ES+ + D +F E +L G W+ Q L
Sbjct: 19 EFIRILVQCLYSLGFKNSASCLEFESKILYKTADSEFLEKQVLSGNWDSCVQVLDRIFDN 78
Query: 62 KVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTL 121
+DD R +T +Y + KQ E L D++ ALN+L+K G E++ + ++
Sbjct: 79 SMDDTR-NTALYL-VFKQCLLEYLKRGDVSLALNVLRKQAPLLRMGKEKIHRLACDIVYS 136
Query: 122 DDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLN 181
++ E+ + L R+ +++EL+++I PI+ I +RL L+ ++
Sbjct: 137 KEMESGEVDNCL---VLDLRRKLLVELEKLIPL-PIV--------IPERRLEHLVETAVM 184
Query: 182 WQHVHCANPQPNPDINTLFVDHVC 205
Q C + D +L+ DH C
Sbjct: 185 DQIDTCMYHN-SCDAVSLYKDHCC 207
|
|
| FB|FBgn0040066 wds "will die slowly" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 54/218 (24%), Positives = 104/218 (47%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ + +
Sbjct: 74 AVSAVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSRLL- 129
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
++ DDKT+KVW+ TG + +GH Y C + + I S S D ++ W
Sbjct: 130 -VSGSDDKTLKVWELSTGKSLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVR 186
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 187 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 240
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 607
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 241 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 278
|
|
| UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 53/218 (24%), Positives = 103/218 (47%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 213
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 607
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WV90 | TPR1_ARATH | No assigned EC number | 0.5379 | 0.9630 | 0.9321 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_Genewise1_v1.C_LG_XVIII1717 | hypothetical protein (1109 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1084 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-28 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-19 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-14 | |
| smart00668 | 58 | smart00668, CTLH, C-terminal to LisH motif | 2e-12 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 7e-06 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 1e-05 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 5e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-04 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 2e-04 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 3e-28
Identities = 80/316 (25%), Positives = 125/316 (39%), Gaps = 39/316 (12%)
Query: 331 IEGSSSP-MSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 389
++G + + F P L G D KVWD+ + L
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGD---------GTIKVWDL--ETGELLRTLK-GHTG 52
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
V V S DG+ L S ++L+ G R + H V+ +AFS P +I
Sbjct: 53 PVRDVAASADGTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFS-PDGRI- 107
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
+ + DKTIKVWD TG + GH V S+ + F+ S S DG IK W D
Sbjct: 108 LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS--PDGTFVASSSQDGTIKLW--D 163
Query: 510 SLGARVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 567
+ G +A+S +G +L S + G L W+ S G T +G
Sbjct: 164 LRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD--GTIKL--WDLSTGKCLGTLRG-- 217
Query: 568 LQH-NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP--RICFNK 624
H N V+ V F + + +D I++WD+ + + T+ N + ++
Sbjct: 218 --HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG----HTNSVTSLAWSP 271
Query: 625 NGTLLAVIANENRIKI 640
+G LA + + I+I
Sbjct: 272 DGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.8 bits (229), Expect = 1e-19
Identities = 84/406 (20%), Positives = 151/406 (37%), Gaps = 19/406 (4%)
Query: 291 GVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLL 350
G SL ++ S SS + + S P + L S S+ F P LL
Sbjct: 22 GPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLL 81
Query: 351 LGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 410
G D K+WD+ L K+ + SPDG+ + +A S
Sbjct: 82 SGSSD---------GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSL 132
Query: 411 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 470
+ + + + ++ H +V LAFS P ++ D TIK+WD TG
Sbjct: 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRTGKPL 191
Query: 471 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS 530
+ GH PV SL + S S DG I+ W + + ++S
Sbjct: 192 STLAGHTDPVSSLAFSPDGGLLIA-SGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFS 250
Query: 531 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 590
+G L S + + + + S L +SV V F + +
Sbjct: 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRT------LSGHSSSVLSVAFSPDGKLLASGSS 304
Query: 591 DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENRIKILETPESNSV 649
D +++WD+ +LL+++ G + F+ +G+LL +++ I++ + +
Sbjct: 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL 364
Query: 650 DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 695
S N+ +S +P V +G +G+V + + + +
Sbjct: 365 KTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-14
Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 26/213 (12%)
Query: 797 VPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 855
V C A S + L + SG G I ++ + T + + T+ + +A + D +A G
Sbjct: 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGS 70
Query: 856 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 915
D TI +++ + E + L GH+ V+ + FS IL SS D I VWDV+ T
Sbjct: 71 SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-----TG 125
Query: 916 RSLQT----PDGVMTLAPSETHIQF----HKDQTRFLLVHETHLAIYEAEELTCLKQWFP 967
+ L T D V ++A S F +D T + +++ C+
Sbjct: 126 KCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGT----IK-----LWDLRTGKCVAT-LT 174
Query: 968 ISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000
+ ++ FS D + +S DGT+ + + S
Sbjct: 175 GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 3e-14
Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 18/208 (8%)
Query: 794 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 852
V A S + L S+S I ++ V T K + T+ + S+AF+P D +A
Sbjct: 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVA 151
Query: 853 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWG 911
D TI +++ R+ + ++ L GH+ V + FS L+SS D I +WD+ G
Sbjct: 152 SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211
Query: 912 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWFPI 968
+ T R +GV ++A S +LL + + +++ C++
Sbjct: 212 LGTLRG--HENGVNSVAFS---------PDGYLLASGSEDGTIRVWDLRTGECVQT-LSG 259
Query: 969 SSVPISQATFSCDCRMVFTSFVDGTLSI 996
+ ++ +S D + + + DGT+ I
Sbjct: 260 HTNSVTSLAWSPDGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-12
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 34 FYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAK 92
+ + K ++IL G W++ ++LSS R S K+ FE+RKQ F E + + +
Sbjct: 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58
|
Alpha-helical motif of unknown function. Length = 58 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 3e-11
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 794 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 852
V A S + L S+S G I L+ + T K + T+ S+AF+P + +
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236
Query: 853 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906
G +D TI +++ R+ E + L GH+ VT L +S L S D I +WD
Sbjct: 237 -GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.7 bits (156), Expect = 1e-10
Identities = 81/459 (17%), Positives = 174/459 (37%), Gaps = 72/459 (15%)
Query: 424 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAPVY 481
L + H ++ +AFS P ++ +++ D TIK+WD G + H + V
Sbjct: 56 LSSLLLRGHEDSITSIAFS-PDGEL-LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVS 113
Query: 482 SLCPHAKENIHFIFSIS-VDGKIKAW-LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 539
L + + + + S +DG +K W L + T +A+S +G+ L S
Sbjct: 114 KLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASG 173
Query: 540 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWD 598
+ + W+ G T G + VS + F I + D I++WD
Sbjct: 174 SSLD---GTIKLWDLRTGKPLSTLAG---HTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227
Query: 599 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SD 657
++ +LL + +G ++ F+ +G+LLA +++ I++ + S+S+ S
Sbjct: 228 LSTGKLLRSTLSG--HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285
Query: 658 NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 717
++ ++ +P + +G ++G+V + + + ++++
Sbjct: 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE----------------- 328
Query: 718 LLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 776
+S L+++ +G + + +G +W + E
Sbjct: 329 ---------GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE----------- 368
Query: 777 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPS 835
V + S + + S S G + L+ + T + + +
Sbjct: 369 ----------------GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412
Query: 836 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 874
TSL F+P D +A G D+TI +++ ++S
Sbjct: 413 SRVTSLDFSP-DGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.0 bits (154), Expect = 2e-10
Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 13/222 (5%)
Query: 803 SKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 861
+ S+ G + L+ + T K I T+ S + TSLAF+P + + D TI
Sbjct: 122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181
Query: 862 IYNARSSEVISKLEGHSKRVTGLVFS-DALNILVSSGGDAQIFVWDVDGWG-IQTCRSLQ 919
+++ R+ + +S L GH+ V+ L FS D ++ S D I +WD+ +++ S
Sbjct: 182 LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241
Query: 920 TPDGVMTLAPSETHIQFHKDQTRFLLVHETH-LAIYEAEELTCLKQWFPISSVPISQATF 978
+ V + F D + + +++ + L + S + F
Sbjct: 242 SDSVVSS---------FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292
Query: 979 SCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1020
S D +++ + DGT+ + + ++ + + P +S
Sbjct: 293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.2 bits (152), Expect = 4e-10
Identities = 47/218 (21%), Positives = 91/218 (41%), Gaps = 10/218 (4%)
Query: 797 VPCFALSKNDAYLFSASG--GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG 854
V A S + L ++ G I L+ + T K + + + + +F+P D +++A G
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP-DGSLLASG 259
Query: 855 MDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 913
D TI +++ RS S ++ L GHS V + FS +L S D + +WD++ +
Sbjct: 260 SSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL 319
Query: 914 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPI 973
+ +L+ +G + + F D + + I + T +
Sbjct: 320 SSLTLKGHEG------PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV 373
Query: 974 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1011
+FS D R+V + DGT+ + + S + +
Sbjct: 374 LSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.6 bits (148), Expect = 1e-09
Identities = 83/472 (17%), Positives = 173/472 (36%), Gaps = 76/472 (16%)
Query: 448 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 507
I ++ D + + D + GH + S+ + + S S DG IK W
Sbjct: 40 ILLLALLSDSLVSLPD----LSSLLLRGHEDSITSIAFS--PDGELLLSGSSDGTIKLWD 93
Query: 508 YDSLGARVD--YDAPGLGCTRMAY-SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 564
D+ + +++A S +G + +S +G + W+ S
Sbjct: 94 LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG--TVKLWDLSTPGKLIRT- 150
Query: 565 GLQLQHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 623
L+ SV+ + F + + D IK+WD+ + L+T+ + + F+
Sbjct: 151 -LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS--LAFS 207
Query: 624 KNGTLLAVIANENR-IKI--LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 680
+G LL + + I++ L T + +G + S + +G+ ++G++
Sbjct: 208 PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS--SDGTI 265
Query: 681 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA 740
+ ++++ T + +
Sbjct: 266 RL---------------------------------------WDLRSSSSLLRTLSGHSSS 286
Query: 741 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 800
+ ++A + + + S++ T ++ + G T + V
Sbjct: 287 VLSVAFSPDGKLL------ASGSSDGTVRL----WDLETGKLLSS--LTLKGHEGPVSSL 334
Query: 801 ALSKNDAYLFSASG--GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 858
+ S + + L S G I L+ + T K + T+ S S++F+P D V++ G D
Sbjct: 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV-LSVSFSP-DGRVVSSGSTDG 392
Query: 859 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 910
T+ +++ + ++ L+GH+ RVT L FS L S D I +WD+
Sbjct: 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.7 bits (130), Expect = 2e-07
Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 19/195 (9%)
Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 387
+TL SSS +S+ F P L G D ++WD+ L + ++
Sbjct: 278 RTLSGHSSSVLSVAFSPDGKLLASGSSD---------GTVRLWDLET-GKLLSSLTLKGH 327
Query: 388 GVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK 446
V+ + +SPDGSLL S ++L+ + L+ NV ++FS +
Sbjct: 328 EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL----RTGKPLKTLEGHSNVLSVSFSPDGR 383
Query: 447 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506
+S + D T+++WD TGS + +GH + V SL + S S D I+ W
Sbjct: 384 VVS--SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS--LASGSSDNTIRLW 439
Query: 507 LYDSLGARVDYDAPG 521
+ V + G
Sbjct: 440 DLKTSLKSVSFSPDG 454
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 28/161 (17%), Positives = 65/161 (40%), Gaps = 11/161 (6%)
Query: 523 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 582
G T +A+S +G+ L + + W+ G + RT +G V V
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGT----IKVWDLETGELLRTLKGHTG---PVRDVAASADG 63
Query: 583 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANENRIKIL 641
+ + D I++WD+ + + T+ G + F+ +G +L+ + + IK+
Sbjct: 64 TYLASGSSDKTIRLWDLETGECVRTL---TGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 642 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 682
+ + +D + ++ +P T + +G++ +
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 7e-07
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 18/130 (13%)
Query: 874 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 933
L+GH+ VT + FS +L + GD I VWD++ + T V
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT-GPV-------RD 56
Query: 934 IQFHKDQTRFLLVHETHLA-IYEAEELTCLKQWF----PISSVPISQATFSCDCRMVFTS 988
+ D T +++ E C++ +SSV FS D R++ +S
Sbjct: 57 VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV-----AFSPDGRILSSS 111
Query: 989 FVDGTLSIHE 998
D T+ + +
Sbjct: 112 SRDKTIKVWD 121
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-06
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 867 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906
S E++ L+GH+ VT + FS L S D I +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 4 LNKDLVFLILQFLNEEGFTESAHMLERESRF 34
+L LIL++L G+ E+A L++ES
Sbjct: 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 36/179 (20%), Positives = 61/179 (34%), Gaps = 46/179 (25%)
Query: 321 DFPKTVAQTLIEG-SSSPMSMDFHPVQHTLL-------LGLWDVNSGQKLFIRNF----- 367
D T + G + S+ F P + + LWD+ +G+ +
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--CVATLTGHTG 178
Query: 368 -----------------------KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 404
K+WD+ S +R VN V +SPDG LL
Sbjct: 179 EVNSVAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPDGYLLA 235
Query: 405 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463
++++ G + H +V LA+S K+ + + D TI++WD
Sbjct: 236 SGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKR--LASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 3e-05
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 869 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906
+++ L+GH+ VT + FS N+L S D + VWD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 5e-05
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 424 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463
+ + H G V +AFS + + DD T++VWD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 2e-04
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 428 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463
+ H G V +AFS K + + DD TIK+WD
Sbjct: 7 TLKGHTGPVTSVAFSPDGKYL--ASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 841 LAFNPHDNNVIAIGMDDSTILIYN-------ARSSEVISKLEGHSKRVTGLVF-SDALNI 892
+AFNP D + +D TI+ + S+ I L+GH+K+V + F A+N+
Sbjct: 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNV 140
Query: 893 LVSSGGDAQIFVWDVD 908
L S+G D + VWDV+
Sbjct: 141 LASAGADMVVNVWDVE 156
|
Length = 493 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1084 | |||
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.98 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.96 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.93 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.92 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.91 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.91 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.9 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.89 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.89 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.88 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.88 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.87 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.87 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.87 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.86 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.85 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.85 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.85 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.84 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.84 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.84 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.83 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.83 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.83 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.83 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.83 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.82 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.82 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.82 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.81 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.81 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.81 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.81 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.8 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.79 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.79 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.78 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.78 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.76 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.75 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.75 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.75 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.75 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.74 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.74 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.74 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.73 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.72 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.72 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.71 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.7 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.69 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.68 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.67 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.67 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.67 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.67 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.67 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.66 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.65 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.64 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.64 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.63 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.62 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.61 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.61 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.61 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.6 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.59 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.59 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.57 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.57 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.56 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.56 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.56 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.55 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.54 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.54 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.54 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.54 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.54 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.53 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.52 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.52 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.52 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.52 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.51 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.5 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.5 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.49 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.48 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.48 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.47 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.47 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.46 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.45 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.44 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.43 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.42 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.42 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.41 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.4 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.38 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.37 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.37 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.36 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.36 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.36 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.36 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.34 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.33 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.33 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.32 | |
| KOG2659 | 228 | consensus LisH motif-containing protein [Cytoskele | 99.32 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.3 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.3 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.3 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.29 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.28 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.27 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.26 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.22 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.22 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.18 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.13 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.09 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.05 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.04 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.01 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.01 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.97 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.95 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.94 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.93 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.92 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.9 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.89 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.88 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.88 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.86 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.79 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.78 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.76 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.76 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.75 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.74 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.72 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.69 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.69 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.67 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.67 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.67 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.66 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.66 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.62 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.62 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.6 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.6 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.58 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.55 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.54 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.52 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.52 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.51 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.47 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.47 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.47 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.46 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.46 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.45 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.44 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.43 | |
| PF10607 | 145 | CLTH: CTLH/CRA C-terminal to LisH motif domain; In | 98.4 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.38 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 98.38 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.38 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.36 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.34 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.3 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.28 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.27 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.2 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.18 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.16 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.15 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.13 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.1 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.06 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.06 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.05 | |
| smart00668 | 58 | CTLH C-terminal to LisH motif. Alpha-helical motif | 98.04 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.03 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.01 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.99 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.99 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.99 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.95 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.91 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.9 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.89 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.85 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.85 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.82 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 97.81 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.8 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.79 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.76 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.76 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.74 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.73 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.67 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.63 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.62 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.61 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.61 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.48 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.45 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.39 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.36 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.31 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.29 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.26 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.26 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.17 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.14 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.1 | |
| PRK10115 | 686 | protease 2; Provisional | 97.09 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.09 | |
| PRK10115 | 686 | protease 2; Provisional | 97.07 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.07 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.0 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.94 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.9 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.84 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.82 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.81 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.78 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.77 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.73 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.73 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.64 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.56 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.54 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.54 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.5 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.46 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.42 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.38 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.38 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.31 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.3 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.29 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.25 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.18 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.18 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.09 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.0 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.95 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.84 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.81 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.69 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.68 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.67 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.54 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.53 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.49 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.34 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.19 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.04 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 94.87 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.85 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.84 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.77 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.64 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.6 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.59 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.29 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.24 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.07 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 94.05 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 93.95 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 93.65 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.64 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.63 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.46 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 93.35 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 93.27 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 93.18 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.03 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 93.0 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.93 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 92.76 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 92.29 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.19 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 92.13 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 91.69 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.57 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 91.56 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 91.26 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 91.24 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 90.82 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 90.54 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 90.34 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 89.95 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 89.94 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 89.9 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 89.88 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 89.59 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 89.5 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 89.5 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 89.43 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 89.36 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 89.27 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 88.98 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 88.89 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 88.72 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 88.72 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 88.65 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 88.63 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 88.26 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 87.76 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 87.06 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 86.79 | |
| PLN02153 | 341 | epithiospecifier protein | 86.6 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 86.24 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 86.11 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 86.09 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 85.92 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 84.99 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 84.97 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 84.72 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 84.63 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 84.47 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 84.44 | |
| PLN02193 | 470 | nitrile-specifier protein | 84.28 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 84.06 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 83.97 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 83.83 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 83.35 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 82.42 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 82.36 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 82.02 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 81.74 | |
| PLN02153 | 341 | epithiospecifier protein | 81.74 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 80.64 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 80.46 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 80.45 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 80.36 |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-73 Score=565.33 Aligned_cols=493 Identities=21% Similarity=0.300 Sum_probs=417.4
Q ss_pred hHHHHHHHHHhhhhcChHHHHHHHHHhcCCChh---HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHH
Q 001403 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD---MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1084)
Q Consensus 5 ~~~~~rli~q~L~~~g~~~s~~~l~~Es~~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~ 81 (1084)
+.|++||+.|+|+.+||.+|+.+||.|+|+.++ .+.|.++|++|+|+.++..+..+...++.+ ..++.|++.+|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~~-~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDERN-RKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchhh-hHHHHHHHHHHHH
Confidence 458999999999999999999999999999886 899999999999999999998875444433 4459999999999
Q ss_pred HhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhccccccchhccccccCCChHHHHHHHHHHHhhcccCcccccc
Q 001403 82 FEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGK 161 (1084)
Q Consensus 82 ~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~ 161 (1084)
||++..+....|+.+||+.+.++. ++.++|++|+.-|..++-....+... .-.....|.+|+++|+++|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 999999999999999999988885 68889999988776654322222111 111357899999999999999999
Q ss_pred ccCCCCcchHHHHHHHHhHHHHHhhCCCCCCCCCCCcccccCcCCCCCCCccCCCCCCCCCCCCCCCCCCccccCCCCCC
Q 001403 162 LKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLT 241 (1084)
Q Consensus 162 ~~~~~~p~~rL~~Ll~qa~~~Q~~~c~~~~~~~~~~sl~~~h~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1084)
+|++||++||+||++||+++|.||| .....|||+||.|.+ .++ |+++
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~------~qi------p~qt--------------- 216 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR------LQI------PSQT--------------- 216 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc------ccC------Cchh---------------
Confidence 9999999999999999999999999 455589999999987 333 3333
Q ss_pred CcccccccccCCCCCCccccccCCCCCCcCccCccccccccccccccccCccccCCCCCCCCcchhhhcccccCCCccCC
Q 001403 242 DSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD 321 (1084)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~fsP~~s~~~~~f~~~~~~~~~~ 321 (1084)
T Consensus 217 -------------------------------------------------------------------------------- 216 (519)
T KOG0293|consen 217 -------------------------------------------------------------------------------- 216 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCC
Q 001403 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 401 (1084)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~ 401 (1084)
.++|..|+++||.+.||++|+|||+++.| .+..||++...........+.||..+|..+.||||.+
T Consensus 217 -----~qil~~htdEVWfl~FS~nGkyLAsaSkD---------~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr 282 (519)
T KOG0293|consen 217 -----WQILQDHTDEVWFLQFSHNGKYLASASKD---------STAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR 282 (519)
T ss_pred -----hhhHhhCCCcEEEEEEcCCCeeEeeccCC---------ceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC
Confidence 35689999999999999999999999999 9999999976555444456899999999999999999
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCC-CcE
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-APV 480 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~-~~v 480 (1084)
||++|+.+..+.+||+.+|....... .+|...+.+++|.|||. .+++|+.|++|..||+ .|..+..+++-. ..|
T Consensus 283 yLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdl-Dgn~~~~W~gvr~~~v 357 (519)
T KOG0293|consen 283 YLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDL-DGNILGNWEGVRDPKV 357 (519)
T ss_pred eEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEecC-Ccchhhccccccccee
Confidence 99999999999999999998766432 24668899999999999 7999999999999995 566677777654 568
Q ss_pred EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 481 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 481 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
.++++ ..||+++++.+.|..|++++.++..... +.....+|++++.|.|++++++.-. +..+++||++....+
T Consensus 358 ~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL~----~qei~LWDl~e~~lv 430 (519)
T KOG0293|consen 358 HDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNLQ----DQEIHLWDLEENKLV 430 (519)
T ss_pred EEEEE--cCCCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEcc----cCeeEEeecchhhHH
Confidence 88988 5588999999999999999987755543 3344568999999999999988765 555999999999999
Q ss_pred eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec-CCCEEEEEECCCeEE
Q 001403 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIK 639 (1084)
Q Consensus 561 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~ 639 (1084)
+.+.||.....-|.++.-..+..++++|++|+.|+||+..+|+++..+.+|.. .|++|+|+| +-.++|++++||+|+
T Consensus 431 ~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVswNP~~p~m~ASasDDgtIR 508 (519)
T KOG0293|consen 431 RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSWNPADPEMFASASDDGTIR 508 (519)
T ss_pred HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEecCCCCHHHhhccCCCCeEE
Confidence 99999985555566554445668999999999999999999999999998865 699999999 667899999999999
Q ss_pred EEEcCC
Q 001403 640 ILETPE 645 (1084)
Q Consensus 640 iwd~~~ 645 (1084)
||-...
T Consensus 509 IWg~~~ 514 (519)
T KOG0293|consen 509 IWGPSD 514 (519)
T ss_pred EecCCc
Confidence 997653
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=472.17 Aligned_cols=486 Identities=18% Similarity=0.267 Sum_probs=399.1
Q ss_pred hHHHHHHHHHhhhhcChHHHHHHHHHhcCCChh----HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhH
Q 001403 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQN 80 (1084)
Q Consensus 5 ~~~~~rli~q~L~~~g~~~s~~~l~~Es~~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~ 80 (1084)
..||||||.|||+|+.++.++++||+|+++++| ++.|.+.|..|+||.++..+.+| +++.+-+..||||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHHH
Confidence 458999999999999999999999999999998 89999999999999999999998 44445678899999
Q ss_pred HHhhhcCCCHHHHHHHHHhh--ccccCCCCHHHHHHHHHHhccccccchhccccccCCChHHHHHHHHHHHhhcccCccc
Q 001403 81 FFEALDGHDIAKALNILKKD--LKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPIL 158 (1084)
Q Consensus 81 ~~Ell~~~~~~~a~~~l~~~--l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~ 158 (1084)
.|||+|.++...|..+||+- +.-+.+.++++|-+|..||..+.++..+.+. ...++.|+. .|.+.++.+|-.
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~---dssKEkrRa---~IAQ~ls~EV~V 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYG---DSSKEKRRA---VIAQALSGEVHV 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcC---cchHHHHHH---HHHHHhcCceEE
Confidence 99999999999999999983 4445677899999999999999998877632 235666663 445555555442
Q ss_pred cccccCCCCcchHHHHHHHHhHHHHHhhCCCCCCCCCCCcccccCcCCCCCCCccCCCCCCCCCCCCCCCCCCccccCCC
Q 001403 159 QGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSS 238 (1084)
Q Consensus 159 ~~~~~~~~~p~~rL~~Ll~qa~~~Q~~~c~~~~~~~~~~sl~~~h~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1084)
+||+||+.||+|||+||+++.+.|..+ .. +.|++.. .
T Consensus 155 --------VppSRLlaLlGQaLKWQqHQGLLPPGt--~i------------------------DLFRGkA---------A 191 (508)
T KOG0275|consen 155 --------VPPSRLLALLGQALKWQQHQGLLPPGT--TI------------------------DLFRGKA---------A 191 (508)
T ss_pred --------cChHHHHHHHHHHhhhHhhcCCCCCCc--ee------------------------eeccchh---------h
Confidence 899999999999999999987666411 00 2333311 0
Q ss_pred CCCCcccccccccCCCCCCccccccCCCCCCcCccCccccccccccccccccCccccCCCCCCCCcchhhhcccccCCCc
Q 001403 239 MLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETS 318 (1084)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~fsP~~s~~~~~f~~~~~~~ 318 (1084)
+| ...+.+||-+.
T Consensus 192 -------------------------------------~K-----~~~Ee~~Pt~l------------------------- 204 (508)
T KOG0275|consen 192 -------------------------------------MK-----DQEEERYPTQL------------------------- 204 (508)
T ss_pred -------------------------------------hh-----hhHhhhchHHh-------------------------
Confidence 00 00112344332
Q ss_pred cCCCccceeeecc-cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccccee-----eeecCCCCCeE
Q 001403 319 FSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKT-----ALVRDPGVSVN 392 (1084)
Q Consensus 319 ~~~~p~~~~~~l~-~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~-----~~~~~h~~~V~ 392 (1084)
.+.++ +....+.|..|||||+||++|+.| |.|.||+..+++..... ..+--+.+.|.
T Consensus 205 --------~r~IKFg~KSh~EcA~FSPDgqyLvsgSvD---------GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVl 267 (508)
T KOG0275|consen 205 --------ARSIKFGQKSHVECARFSPDGQYLVSGSVD---------GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVL 267 (508)
T ss_pred --------hhheecccccchhheeeCCCCceEeecccc---------ceeeeehhccchhhhhhhhhhhcceeecccceE
Confidence 22222 445588999999999999999999 99999999877653211 12445788999
Q ss_pred EEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001403 393 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 472 (1084)
Q Consensus 393 ~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~ 472 (1084)
|+.||.|...||+|+.||.|+||.+.+|.+++.+. ++|...|+|+.||.|+. .+++++.|.++++.-+++|+++..
T Consensus 268 ci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSGK~LKE 343 (508)
T KOG0275|consen 268 CISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSGKCLKE 343 (508)
T ss_pred EEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccceEEEeccccchhHHH
Confidence 99999999999999999999999999999998432 28999999999999999 699999999999999999999999
Q ss_pred eccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCC--CeEEEEEEcCCC-CEEEEEeeCCCCCeeE
Q 001403 473 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSANG-RRLFSCGTSKEGESFL 549 (1084)
Q Consensus 473 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~i~~~~~s~d~-~~l~~~~~~~~~~~~i 549 (1084)
++||...|+...| .+||..+++++.||+|++|+..+.++..++...+ .+|.++..-|.+ ..+++|.. .+++
T Consensus 344 frGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr----sntv 417 (508)
T KOG0275|consen 344 FRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR----SNTV 417 (508)
T ss_pred hcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC----CCeE
Confidence 9999999999999 5688999999999999999999998877776544 467787777744 56677754 6679
Q ss_pred EEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEE
Q 001403 550 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 629 (1084)
Q Consensus 550 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 629 (1084)
++.++. |+.++.+......++...+++.+|.|.++++.++|+.++.|...+|.+..++..+.. .+..++-+|..+.+
T Consensus 418 ~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHPHqNll 494 (508)
T KOG0275|consen 418 YIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHPHQNLL 494 (508)
T ss_pred EEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCcccchh
Confidence 999875 788888877665667788889999999999999999999999999999999987765 47889999999999
Q ss_pred EEEECCCeEEEEE
Q 001403 630 AVIANENRIKILE 642 (1084)
Q Consensus 630 ~~~~~dg~i~iwd 642 (1084)
|+-+.||.+++|.
T Consensus 495 AsYsEDgllKLWk 507 (508)
T KOG0275|consen 495 ASYSEDGLLKLWK 507 (508)
T ss_pred hhhcccchhhhcC
Confidence 9999999999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-59 Score=495.59 Aligned_cols=578 Identities=18% Similarity=0.247 Sum_probs=493.4
Q ss_pred EEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccC
Q 001403 340 MDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG 419 (1084)
Q Consensus 340 v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~ 419 (1084)
++||++|+.|++..- ..|.+-|+.++...+.. .-.+....+++++.+||+++|++++....+++|++.+
T Consensus 25 ~~~s~nG~~L~t~~~----------d~Vi~idv~t~~~~l~s-~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~t 93 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACG----------DRVIIIDVATGSIALPS-GSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPT 93 (775)
T ss_pred eeECCCCCEEEEecC----------ceEEEEEccCCceeccc-CCccchhhhheeeecCCccEEEEeeccceEEEEEccc
Confidence 899999999999532 45888888887764222 2344567899999999999999999999999999999
Q ss_pred Cccccceeeeec-ccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEe
Q 001403 420 GSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 498 (1084)
Q Consensus 420 ~~~~~~~~~l~~-h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 498 (1084)
|+.++ .++. |++||.-++|+|.+. ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|+|..+...|++|.
T Consensus 94 gk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~ 168 (775)
T KOG0319|consen 94 GKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGA 168 (775)
T ss_pred chHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecC
Confidence 98877 5666 999999999999997 89999999999999999999999999999999999999988888899999
Q ss_pred cCCeEEEEECCCCCc-eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEE
Q 001403 499 VDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 577 (1084)
Q Consensus 499 ~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~ 577 (1084)
.|+++++||+..... ......|...+++++|++|+..+++++. +..+.+||+.+.+....++..+ .+.++.
T Consensus 169 ~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye----~~E~vv 240 (775)
T KOG0319|consen 169 TDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE----SLESVV 240 (775)
T ss_pred CCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh----heeeEE
Confidence 999999999996554 6678889999999999999999999986 6779999998877777776654 677777
Q ss_pred EcCC-----CCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeec
Q 001403 578 FDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 652 (1084)
Q Consensus 578 ~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 652 (1084)
+-++ +.+++++|++|.+++||.+++++........ .+.+..+...+....++..+.|..+.++|..+.+....+
T Consensus 241 ~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i 319 (775)
T KOG0319|consen 241 RLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI 319 (775)
T ss_pred EechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEccccEEehhh
Confidence 8777 6799999999999999999998887665443 223666666666667777888999999999999999999
Q ss_pred cccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEE
Q 001403 653 GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRL 732 (1084)
Q Consensus 653 ~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l 732 (1084)
-|..+.|..+.|- .|+...++.++..+.+|+|+.. ...|..+ .+|...|.++
T Consensus 320 vG~ndEI~Dm~~l---------------------G~e~~~laVATNs~~lr~y~~~---~~~c~ii----~GH~e~vlSL 371 (775)
T KOG0319|consen 320 VGYNDEILDMKFL---------------------GPEESHLAVATNSPELRLYTLP---TSYCQII----PGHTEAVLSL 371 (775)
T ss_pred cCCchhheeeeec---------------------CCccceEEEEeCCCceEEEecC---CCceEEE----eCchhheeee
Confidence 9999999888775 4677888888899999999654 3344422 4699999999
Q ss_pred EEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCC-CEEEE
Q 001403 733 TYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND-AYLFS 811 (1084)
Q Consensus 733 ~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~~ 811 (1084)
....+|..|++++.|..+++|.++.+.. .....-...+|...|.+++++..+ .++++
T Consensus 372 ~~~~~g~llat~sKD~svilWr~~~~~~----------------------~~~~~a~~~gH~~svgava~~~~~asffvs 429 (775)
T KOG0319|consen 372 DVWSSGDLLATGSKDKSVILWRLNNNCS----------------------KSLCVAQANGHTNSVGAVAGSKLGASFFVS 429 (775)
T ss_pred eecccCcEEEEecCCceEEEEEecCCcc----------------------hhhhhhhhcccccccceeeecccCccEEEE
Confidence 9888889999999999999998743211 000001122599999999998766 46777
Q ss_pred Ee-CCeEEEEEcCCceeE---------EEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCE
Q 001403 812 AS-GGVISLYIVMTFKTI---------LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV 881 (1084)
Q Consensus 812 ~s-dg~i~vwd~~~~~~~---------~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V 881 (1084)
++ |.++++|++...+.. .+...|...|++++++| +.+++|||++|++.+||+++.+....++.||...|
T Consensus 430 vS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGv 508 (775)
T KOG0319|consen 430 VSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGV 508 (775)
T ss_pred ecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccce
Confidence 77 899999999752211 12346889999999999 89999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcc
Q 001403 882 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT 960 (1084)
Q Consensus 882 ~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~ 960 (1084)
.++.|+|..+.|||+|.|++|+||.+++ ..|+++++||.. .|..+.|-.+|+.|++ ++||-+++|++++++
T Consensus 509 w~V~Fs~~dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~---aVlra~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 509 WCVSFSKNDQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred EEEEeccccceeEeccCCceEEEEEecc-----ceeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 9999999999999999999999999999 458999999987 8999999999999999 699999999999999
Q ss_pred eeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001403 961 CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 961 ~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
|... +..|..+|+++..++++.+++||+.||.|.+|.=.+.
T Consensus 581 C~~t-lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 581 CEMT-LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred hhhh-hhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9998 6789999999999999999999999999999975543
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=470.96 Aligned_cols=583 Identities=14% Similarity=0.187 Sum_probs=473.6
Q ss_pred CCCCCCcchhhhcccccCCCccCCCccce-ee-ecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCc
Q 001403 298 PDYSPKSSLKKEMFQSFGETSFSDFPKTV-AQ-TLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGAC 375 (1084)
Q Consensus 298 ~~fsP~~s~~~~~f~~~~~~~~~~~p~~~-~~-~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~ 375 (1084)
..|+++++.+...+...... ++.-+... +. .-.+..+.+++++.+||+.+|+++... ..+++|++.++
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~-idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs---------~llrv~~L~tg 94 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVII-IDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRS---------QLLRVWSLPTG 94 (775)
T ss_pred eeECCCCCEEEEecCceEEE-EEccCCceecccCCccchhhhheeeecCCccEEEEeecc---------ceEEEEEcccc
Confidence 78889988887776531100 00001111 11 123456789999999999999997655 89999999998
Q ss_pred cccceeeeecC-CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEe
Q 001403 376 SMLFKTALVRD-PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 454 (1084)
Q Consensus 376 ~~~~~~~~~~~-h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~ 454 (1084)
..... +.. |+.+|.-++|+|.|..||+|+.|+.|+|||+..+.+.. .|+||.+.|.++.|.|+-...+|++|+
T Consensus 95 k~irs---wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~ 168 (775)
T KOG0319|consen 95 KLIRS---WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGA 168 (775)
T ss_pred hHhHh---HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecC
Confidence 55433 333 99999999999999999999999999999999987665 899999999999999998866799999
Q ss_pred CCCcEEEEECCCCce-eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCC-
Q 001403 455 DDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN- 532 (1084)
Q Consensus 455 ~d~~i~vwd~~~g~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d- 532 (1084)
.|+++++||+.++.. +.++..|.+.|++++|. +|+..+++++.|..+.+||+..-+.....+.. ..+.++.+-++
T Consensus 169 ~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~--~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~ 245 (775)
T KOG0319|consen 169 TDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFS--EDSLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREE 245 (775)
T ss_pred CCceEEEEEcccCchHHHHHHhhhhheeeeeec--cCCceEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechh
Confidence 999999999996654 88899999999999995 46789999999999999999655544444322 35666777666
Q ss_pred ----CCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 001403 533 ----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 608 (1084)
Q Consensus 533 ----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 608 (1084)
|.++++++. ++.+++||..+++++....... ...+..+...+....++....|..+.++|.++.+....+
T Consensus 246 ~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~--~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i 319 (775)
T KOG0319|consen 246 LGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSD--SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI 319 (775)
T ss_pred cCCcceEEEEecC----CceEEEEecccchhhhhhccCC--chhhhcceeccccCceEEEEccceEEEEEccccEEehhh
Confidence 678888875 7789999999998876655443 233666677777778888888999999999999999888
Q ss_pred cCCCCCCCcceEEEe-cCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCC
Q 001403 609 DAGGGLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 687 (1084)
Q Consensus 609 ~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s 687 (1084)
-+... .|..++|- |+.++++++++.+.+++|+..+..+. .+.+|.+.|.++...
T Consensus 320 vG~nd--EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~---------------------- 374 (775)
T KOG0319|consen 320 VGYND--EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVW---------------------- 374 (775)
T ss_pred cCCch--hheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeec----------------------
Confidence 75543 58888765 67899999999999999998887666 889999999888743
Q ss_pred CCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCC-eEEEeecCCceEEeeccCCccCcCccc
Q 001403 688 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEA 766 (1084)
Q Consensus 688 ~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~ 766 (1084)
..|.++++++.|+++++|.++... ..........+|.+.|.+++++..+. .+++++.|+++++|+++..+....
T Consensus 375 ~~g~llat~sKD~svilWr~~~~~--~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--- 449 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNNC--SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--- 449 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCCc--chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc---
Confidence 456789999999999999883211 11112223357999999999987664 567888899999999986221100
Q ss_pred ceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcC
Q 001403 767 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNP 845 (1084)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 845 (1084)
+. ..........|...|+|++++|+.+++|+|+ |.+.++|+++.+....++.+|...+.++.|+|
T Consensus 450 -----~~---------~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~ 515 (775)
T KOG0319|consen 450 -----PI---------VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK 515 (775)
T ss_pred -----cc---------eehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc
Confidence 01 1111122335999999999999999999999 89999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCc
Q 001403 846 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM 925 (1084)
Q Consensus 846 ~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 925 (1084)
..+++|+++.|++|+||.+.+..++++|.||+..|..+.|-.+|+.|+|++.||.|++|++++++ |....+.|.
T Consensus 516 -~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e-----C~~tlD~H~ 589 (775)
T KOG0319|consen 516 -NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE-----CEMTLDAHN 589 (775)
T ss_pred -ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh-----hhhhhhhcc
Confidence 88999999999999999999999999999999999999999999999999999999999999955 788888988
Q ss_pred cCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCC
Q 001403 926 TLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE 958 (1084)
Q Consensus 926 ~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~ 958 (1084)
. .|++++.+|++.++++ +.|+.|.+|.=.+
T Consensus 590 D---rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 590 D---RVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred c---eeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 7 9999999999999998 5899999996443
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=423.29 Aligned_cols=573 Identities=15% Similarity=0.198 Sum_probs=456.8
Q ss_pred EEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccC
Q 001403 340 MDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG 419 (1084)
Q Consensus 340 v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~ 419 (1084)
+.-.|.|..++.. .| +.|.+-+++..... .++.+|...++-..|||.|-|+|+|...|+|+|||...
T Consensus 24 ig~dpkgd~ilY~-----nG-----ksv~ir~i~~~~~~---~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~ 90 (603)
T KOG0318|consen 24 IGGDPKGDNILYT-----NG-----KSVIIRNIDNPASV---DIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQ 90 (603)
T ss_pred eccCCCCCeEEEe-----CC-----CEEEEEECCCccce---eeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccC
Confidence 4446777777763 12 67788888765543 34788999999999999999999999999999999887
Q ss_pred CccccceeeeecccccEeEEEeecCCCcEEEEEEe--CCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEE
Q 001403 420 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 497 (1084)
Q Consensus 420 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~--~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 497 (1084)
.+.+- ..++..-.++|..++|+.|+++ ++..+ .++-.+++-.++|..+.++.||...|+++.|-|+.. -.++++
T Consensus 91 ~~hiL-Knef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRP-fRi~T~ 166 (603)
T KOG0318|consen 91 KEHIL-KNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRP-FRIATG 166 (603)
T ss_pred cceee-eeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCc-eEEEec
Confidence 44322 2256677889999999999995 44444 344444444458999999999999999999977643 689999
Q ss_pred ecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEE
Q 001403 498 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 577 (1084)
Q Consensus 498 s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~ 577 (1084)
+.|++|.+|+=...+-...+..|..-|.++.|+|||.++++++. ++.+++||-.+|+.+..+.....|.+.|.+++
T Consensus 167 sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~aHkGsIfals 242 (603)
T KOG0318|consen 167 SDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDAHKGSIFALS 242 (603)
T ss_pred cCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCCccccEEEEE
Confidence 99999999987766777778888889999999999999999987 66799999999999999995555559999999
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCC-cceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccc
Q 001403 578 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE-NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS 656 (1084)
Q Consensus 578 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 656 (1084)
|+||+..+++++.|.+++|||+.+.++++++........ ...+.|. +..|++.+.+|.|.+++......+..+.+|.
T Consensus 243 WsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn 320 (603)
T KOG0318|consen 243 WSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN 320 (603)
T ss_pred ECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccc
Confidence 999999999999999999999999999999986654211 2234444 6689999999999999999999999999999
Q ss_pred cceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEec
Q 001403 657 DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNN 736 (1084)
Q Consensus 657 ~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 736 (1084)
..|+++..+ ++++++.+++.||.|.-|+...+.... +....|...|.+++.+.
T Consensus 321 K~ITaLtv~----------------------~d~~~i~SgsyDG~I~~W~~~~g~~~~-----~~g~~h~nqI~~~~~~~ 373 (603)
T KOG0318|consen 321 KSITALTVS----------------------PDGKTIYSGSYDGHINSWDSGSGTSDR-----LAGKGHTNQIKGMAASE 373 (603)
T ss_pred cceeEEEEc----------------------CCCCEEEeeccCceEEEEecCCccccc-----cccccccceEEEEeecC
Confidence 999999997 678899999999999999987544332 22345899999999988
Q ss_pred CCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCe
Q 001403 737 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGV 816 (1084)
Q Consensus 737 ~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~ 816 (1084)
.+. +++++.|.++++.++..+....... .. ......+++..+++.+++.+.++.
T Consensus 374 ~~~-~~t~g~Dd~l~~~~~~~~~~t~~~~--------------------~~-----lg~QP~~lav~~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 374 SGE-LFTIGWDDTLRVISLKDNGYTKSEV--------------------VK-----LGSQPKGLAVLSDGGTAVVACISD 427 (603)
T ss_pred CCc-EEEEecCCeEEEEecccCcccccce--------------------ee-----cCCCceeEEEcCCCCEEEEEecCc
Confidence 666 8888888899887764432211000 01 123344899999988888888766
Q ss_pred EEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee--eeecccccCEEEEEEcCCCCEEE
Q 001403 817 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLEGHSKRVTGLVFSDALNILV 894 (1084)
Q Consensus 817 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~--~~l~~h~~~V~~l~~spd~~~l~ 894 (1084)
|.+..-.++ ..+.. ..-...++|++| ++..+|+|++||.|+||.+..+++. ..+..|.++|+++++|||+.+||
T Consensus 428 iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla 503 (603)
T KOG0318|consen 428 IVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLA 503 (603)
T ss_pred EEEEecCCc--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEE
Confidence 666552222 22222 334678999999 9999999999999999999876543 34567999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCE
Q 001403 895 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPI 973 (1084)
Q Consensus 895 s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v 973 (1084)
++...+.|.+||+.+.+.... ...-|.. .|.+++|||+.+++|+| -|..|.||+++...........|...|
T Consensus 504 ~~Da~rkvv~yd~~s~~~~~~----~w~FHta---kI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gV 576 (603)
T KOG0318|consen 504 AGDASRKVVLYDVASREVKTN----RWAFHTA---KINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGV 576 (603)
T ss_pred EeccCCcEEEEEcccCceecc----eeeeeee---eEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCc
Confidence 999999999999999764221 1112333 79999999999999995 789999999998776666678898889
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001403 974 SQATFSCDCRMVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 974 ~~l~fs~dg~~l~t~~~dg~i~vwd~~ 1000 (1084)
+.+.|..+ ..|++++.|..|++|++.
T Consensus 577 n~v~wlde-~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 577 NSVAWLDE-STVVSSGQDANIKVWNVT 602 (603)
T ss_pred eeEEEecC-ceEEeccCcceeEEeccc
Confidence 99999755 578889999999999975
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-50 Score=425.80 Aligned_cols=581 Identities=16% Similarity=0.200 Sum_probs=446.0
Q ss_pred CCCCCCCc-chhhhcccccCCCccCCCccceeeecc-cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCC
Q 001403 297 IPDYSPKS-SLKKEMFQSFGETSFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGA 374 (1084)
Q Consensus 297 ~~~fsP~~-s~~~~~f~~~~~~~~~~~p~~~~~~l~-~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~ 374 (1084)
.++|+|++ |++...= +...+.++.++...+|. .+...|.+++.||||.+|++.--. |...+-.+..
T Consensus 19 nl~ft~dG~sviSPvG---Nrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~---------g~~~lvs~~~ 86 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPVG---NRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDER---------GRALLVSLLS 86 (893)
T ss_pred cEEECCCCCEEEeccC---CEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCC---------CcEEEEeccc
Confidence 47788885 3332211 11234455566666666 667799999999999999985322 4445545544
Q ss_pred ccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCcc-----ccceeeeecccccEeEEEeecCCCcEE
Q 001403 375 CSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAPCKQIS 449 (1084)
Q Consensus 375 ~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~-----~~~~~~l~~h~~~V~~l~~s~d~~~l~ 449 (1084)
........ -+.+|.|+.|||||+++|+|..+ .+.||....... .....++.+|...|.++.|+.|.+ +
T Consensus 87 r~Vlh~f~----fk~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~ 159 (893)
T KOG0291|consen 87 RSVLHRFN----FKRGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--L 159 (893)
T ss_pred ceeeEEEe----ecCccceEEECCCCcEEEEEecc-eeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--e
Confidence 33332221 35799999999999999998765 599998764322 223346678999999999999999 8
Q ss_pred EEEEeCCCcEEEEECCCCce--eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC----------------
Q 001403 450 VITCGDDKTIKVWDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---------------- 511 (1084)
Q Consensus 450 l~s~~~d~~i~vwd~~~g~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---------------- 511 (1084)
+++|+.|.++++|+++..+- .+.+.+|.+.|.++-| ..+...+++.+.||.+.+|..+..
T Consensus 160 l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d 237 (893)
T KOG0291|consen 160 LVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDD 237 (893)
T ss_pred EEeccccceEEEEEeccccccceEeccCCCcceEEEEe--ccCcceEEEEecCceEEEEEecCCCccccccccccccccc
Confidence 99999999999999886655 6778999999999888 446678999999999999987610
Q ss_pred -------Cc-----------eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCce
Q 001403 512 -------GA-----------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 573 (1084)
Q Consensus 512 -------~~-----------~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v 573 (1084)
+. +.-+......+++.+|++..+.|+++-. .+...+|++....+++.+.-.. .+|
T Consensus 238 ~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~---~~I 310 (893)
T KOG0291|consen 238 EEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISD---QKI 310 (893)
T ss_pred ccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeeccc---cee
Confidence 11 0111223357899999999999999876 5558899999999999888766 789
Q ss_pred EEEEEcCCCCEEEEEEC-CCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeec
Q 001403 574 SVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 652 (1084)
Q Consensus 574 ~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 652 (1084)
..++|+..|.+++.|+. -|.+-||+..+..-+...++| ...+.+++++|||+++|+|++||.|+|||..++-++.++
T Consensus 311 ~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF 388 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF 388 (893)
T ss_pred eEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc--ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe
Confidence 99999999999999775 489999999987776666644 557999999999999999999999999999988777666
Q ss_pred cccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEE
Q 001403 653 GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRL 732 (1084)
Q Consensus 653 ~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l 732 (1084)
.. |+..++.+
T Consensus 389 te----------------------------------------------------------------------Hts~Vt~v 398 (893)
T KOG0291|consen 389 TE----------------------------------------------------------------------HTSGVTAV 398 (893)
T ss_pred cc----------------------------------------------------------------------CCCceEEE
Confidence 53 55667778
Q ss_pred EEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEE
Q 001403 733 TYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA 812 (1084)
Q Consensus 733 ~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~ 812 (1084)
.|+..|+.+++++-||+|+.||+... .+..++..+ ......|++..|.|..+.+|
T Consensus 399 ~f~~~g~~llssSLDGtVRAwDlkRY----------------------rNfRTft~P---~p~QfscvavD~sGelV~AG 453 (893)
T KOG0291|consen 399 QFTARGNVLLSSSLDGTVRAWDLKRY----------------------RNFRTFTSP---EPIQFSCVAVDPSGELVCAG 453 (893)
T ss_pred EEEecCCEEEEeecCCeEEeeeeccc----------------------ceeeeecCC---CceeeeEEEEcCCCCEEEee
Confidence 88888888888888998888876543 223333322 34566899999999999988
Q ss_pred e-C-CeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-eeeeeecccccCEEEEEEcCC
Q 001403 813 S-G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDA 889 (1084)
Q Consensus 813 s-d-g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~-~~~~~l~~h~~~V~~l~~spd 889 (1084)
+ | -.|.+|++++|+.+..+.+|.++|.+++|+| .+..||+|+.|.+|++||+-.. ..+.+++ +...+..++|+||
T Consensus 454 ~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 454 AQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPD 531 (893)
T ss_pred ccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCC
Confidence 8 4 4599999999999999999999999999999 8999999999999999999764 3445555 7778999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeee----eee--------ecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEc
Q 001403 890 LNILVSSGGDAQIFVWDVDGWGIQTC----RSL--------QTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEA 956 (1084)
Q Consensus 890 ~~~l~s~s~dg~I~iwd~~~~~~~~~----~~~--------~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~ 956 (1084)
|+.||+++-||.|.+||+..+..... +-+ .....+.......+.+++|+||..+++ |..+.|++|++
T Consensus 532 G~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 532 GKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred CCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 99999999999999999987543210 000 000111122247899999999999998 57788999999
Q ss_pred CCcceeeEeecC----------------------------------------------------C---CCCEEEEEEccC
Q 001403 957 EELTCLKQWFPI----------------------------------------------------S---SVPISQATFSCD 981 (1084)
Q Consensus 957 ~~~~~~~~~~~~----------------------------------------------------h---~~~v~~l~fs~d 981 (1084)
.++..++.+... + .-.|.++.|||.
T Consensus 612 ~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPt 691 (893)
T KOG0291|consen 612 PEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPT 691 (893)
T ss_pred chhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCC
Confidence 887665542111 0 124788999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcee
Q 001403 982 CRMVFTSFVDGTLSIHEASNLEVQ 1005 (1084)
Q Consensus 982 g~~l~t~~~dg~i~vwd~~~~~~~ 1005 (1084)
|+-++.++..| +.||.+.+.-+.
T Consensus 692 graFAaatTEG-l~IYsld~~~~F 714 (893)
T KOG0291|consen 692 GRAFAAATTEG-LLIYSLDTTILF 714 (893)
T ss_pred cCeeeeecccc-eEEEecCCceEE
Confidence 99999998887 788888776544
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-49 Score=421.79 Aligned_cols=578 Identities=15% Similarity=0.208 Sum_probs=461.0
Q ss_pred EEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001403 393 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 472 (1084)
Q Consensus 393 ~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~ 472 (1084)
.+.|++||..+++-..+. |.++|+...+... -.-.+...|.+++.||+|. ++++..+.|...+-++.....++.
T Consensus 19 nl~ft~dG~sviSPvGNr-vsv~dLknN~S~T---l~~e~~~NI~~ialSp~g~--lllavdE~g~~~lvs~~~r~Vlh~ 92 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPVGNR-VSVFDLKNNKSYT---LPLETRYNITRIALSPDGT--LLLAVDERGRALLVSLLSRSVLHR 92 (893)
T ss_pred cEEECCCCCEEEeccCCE-EEEEEccCCccee---EEeecCCceEEEEeCCCce--EEEEEcCCCcEEEEecccceeeEE
Confidence 488999999998876554 9999999875432 2225777899999999999 889999999999999998888888
Q ss_pred eccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc--------eEeecCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001403 473 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 544 (1084)
Q Consensus 473 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--------~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 544 (1084)
+. ...+|.++.|+| ||.+++.+ ..+.+.+|....... ...+.++-..+.++.|+.|.+++++++.
T Consensus 93 f~-fk~~v~~i~fSP--ng~~fav~-~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr--- 165 (893)
T KOG0291|consen 93 FN-FKRGVGAIKFSP--NGKFFAVG-CGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR--- 165 (893)
T ss_pred Ee-ecCccceEEECC--CCcEEEEE-ecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccc---
Confidence 76 677899999955 66666554 456899997654322 2345677779999999999999999986
Q ss_pred CCeeEEEecCCCceE--eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC---------------------
Q 001403 545 GESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--------------------- 601 (1084)
Q Consensus 545 ~~~~i~~wd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--------------------- 601 (1084)
+..+++|+++..+- ...+.+|. +.|..+.|..+...+++.+.||.+.+|....
T Consensus 166 -D~s~rl~~v~~~k~~~~~~l~gHk---d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~ 241 (893)
T KOG0291|consen 166 -DLSARLFGVDGNKNLFTYALNGHK---DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD 241 (893)
T ss_pred -cceEEEEEeccccccceEeccCCC---cceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence 67799999886555 56677777 9999999999999999999999999997761
Q ss_pred --CeE---------EEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCce
Q 001403 602 --VQL---------LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 670 (1084)
Q Consensus 602 --~~~---------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 670 (1084)
++. ....-.......+.+.+|++....|+++-..|...+|.++.-..+..+......|..++++..+
T Consensus 242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tG-- 319 (893)
T KOG0291|consen 242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTG-- 319 (893)
T ss_pred ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccC--
Confidence 111 0011111222458899999999999999999999999999999999999888899999888554
Q ss_pred eeeeccCceeEecCCCCCCCCccceeccc-CccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCc
Q 001403 671 TGAGIANGSVSVNEDPKEDVKPEISVEAE-NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV 749 (1084)
Q Consensus 671 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 749 (1084)
.+++.|+.. |.+-+|+... ....+...+|...+.+++++|||+++++|+.||.
T Consensus 320 --------------------DWiA~g~~klgQLlVweWqs------EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK 373 (893)
T KOG0291|consen 320 --------------------DWIAFGCSKLGQLLVWEWQS------ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK 373 (893)
T ss_pred --------------------CEEEEcCCccceEEEEEeec------cceeeeccccccceeeEEECCCCcEEEeccCCCc
Confidence 444444433 6788888752 3344555679999999999999999999999998
Q ss_pred eEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeE
Q 001403 750 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI 828 (1084)
Q Consensus 750 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~ 828 (1084)
|+||| ..+|.|+.++. .|...|+.+.|+..|+.+++.+ ||+|+.||+...+..
T Consensus 374 VKvWn----------------------~~SgfC~vTFt----eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf 427 (893)
T KOG0291|consen 374 VKVWN----------------------TQSGFCFVTFT----EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF 427 (893)
T ss_pred EEEEe----------------------ccCceEEEEec----cCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee
Confidence 88865 55667777765 3999999999999999999999 999999999999999
Q ss_pred EEEcCCC-CCeEEEEEcCCCCcEEEEEeCCC-eEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001403 829 LTIMPPS-PTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906 (1084)
Q Consensus 829 ~~~~~~~-~~i~~l~~s~~d~~~la~g~~dg-~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd 906 (1084)
+++..+. ....|++..| .|.++.+|+.|. .|++|++.+|+++..+.||.++|.+++|+|++..|||+|+|.+|++||
T Consensus 428 RTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 428 RTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred eeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence 9998765 3568999999 899999999887 899999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeec------------------
Q 001403 907 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFP------------------ 967 (1084)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~------------------ 967 (1084)
+-...... ..+... ..+..++|+|||+.||+ .-||.|.+||+..+.....+..
T Consensus 507 if~s~~~v-Etl~i~-------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~ 578 (893)
T KOG0291|consen 507 IFSSSGTV-ETLEIR-------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN 578 (893)
T ss_pred eeccCcee-eeEeec-------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence 97642111 112211 15899999999999999 5899999999987655432110
Q ss_pred -CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccc---------------------------------
Q 001403 968 -ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY--------------------------------- 1013 (1084)
Q Consensus 968 -~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~--------------------------------- 1013 (1084)
......+.+++|+||..+++|+....|.+|++.++-++.++.....
T Consensus 579 sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~ 658 (893)
T KOG0291|consen 579 SAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEG 658 (893)
T ss_pred cccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccc
Confidence 1156889999999999999999999999999999988877651111
Q ss_pred -----cCCCC----c----ccceeeeEEEECCCCCCEEEEEeCCCcEEEEcC
Q 001403 1014 -----LRPTT----S----CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1052 (1084)
Q Consensus 1014 -----~~~~~----~----~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~ 1052 (1084)
+|... . ...|....+.|+|. |.-++++++.|- .||.+
T Consensus 659 ~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPt-graFAaatTEGl-~IYsl 708 (893)
T KOG0291|consen 659 RIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPT-GRAFAAATTEGL-LIYSL 708 (893)
T ss_pred cccccCCccccCCccccccCceEEEEEEEECCC-cCeeeeecccce-EEEec
Confidence 00000 0 11367788999994 889999988883 44544
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=406.44 Aligned_cols=541 Identities=12% Similarity=0.189 Sum_probs=431.8
Q ss_pred eeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE
Q 001403 327 AQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 406 (1084)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~ 406 (1084)
.....+|...++-..|||.|-|+|+|-.. |+|+|||.......++.. +..-.++|..++|++|+++|++.
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~s---------G~vRIWdtt~~~hiLKne-f~v~aG~I~Di~Wd~ds~RI~av 121 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVS---------GKVRIWDTTQKEHILKNE-FQVLAGPIKDISWDFDSKRIAAV 121 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCc---------CcEEEEeccCcceeeeee-eeecccccccceeCCCCcEEEEE
Confidence 55678899999999999999999997444 999999998765555433 44456799999999999999987
Q ss_pred eCC--CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEe
Q 001403 407 YSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 484 (1084)
Q Consensus 407 ~~d--g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~ 484 (1084)
+.. ...+++-+++|..+. ++.||...|++++|-|.... .++||++|++|.+|+=.--+...+++.|..-|+++.
T Consensus 122 GEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VR 197 (603)
T KOG0318|consen 122 GEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVR 197 (603)
T ss_pred ecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeecccccccceeeEE
Confidence 643 233444444555455 78899999999999998765 899999999999998555555677888999999999
Q ss_pred ecccCCCcEEEEEecCCeEEEEECCCCCceEeec---CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEee
Q 001403 485 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 561 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 561 (1084)
|+| ||.++++++.||.+.+||=.+++....+. .|.+.|.+++|+||++.+++++. +.++++||+.+.++++
T Consensus 198 ysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWdVs~~slv~ 271 (603)
T KOG0318|consen 198 YSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWDVSTNSLVS 271 (603)
T ss_pred ECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEEeeccceEE
Confidence 955 78999999999999999999999988887 78889999999999999999987 6679999999999999
Q ss_pred eeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEE
Q 001403 562 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 641 (1084)
Q Consensus 562 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 641 (1084)
++.....-.+....+.|. +..|++.+-+|+|.+++...+..+..+.+|.. .|++++.+||+++|++|+.||.|.-|
T Consensus 272 t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK--~ITaLtv~~d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 272 TWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK--SITALTVSPDGKTIYSGSYDGHINSW 347 (603)
T ss_pred EeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccccc--ceeEEEEcCCCCEEEeeccCceEEEE
Confidence 887655222344455565 56899999999999999999998899887755 69999999999999999999999999
Q ss_pred EcCCCCeeeec-cccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeecc
Q 001403 642 ETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 720 (1084)
Q Consensus 642 d~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~ 720 (1084)
+..++..-... +.|...|.+++.+ ....+++.+.|.++++.++....-.....+.+
T Consensus 348 ~~~~g~~~~~~g~~h~nqI~~~~~~-----------------------~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l 404 (603)
T KOG0318|consen 348 DSGSGTSDRLAGKGHTNQIKGMAAS-----------------------ESGELFTIGWDDTLRVISLKDNGYTKSEVVKL 404 (603)
T ss_pred ecCCccccccccccccceEEEEeec-----------------------CCCcEEEEecCCeEEEEecccCcccccceeec
Confidence 99988666544 6788888888776 23457788888888888764332222221211
Q ss_pred CCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEE
Q 001403 721 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 800 (1084)
Q Consensus 721 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 800 (1084)
......++..+++..++.+...+.+.+-+... +... .......++
T Consensus 405 -----g~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-------------------------~~~~-----~~~y~~s~v 449 (603)
T KOG0318|consen 405 -----GSQPKGLAVLSDGGTAVVACISDIVLLQDQTK-------------------------VSSI-----PIGYESSAV 449 (603)
T ss_pred -----CCCceeEEEcCCCCEEEEEecCcEEEEecCCc-------------------------ceee-----ccccccceE
Confidence 12334788888887666666554444322111 1111 134567899
Q ss_pred EecCCCCEEEEEe-CCeEEEEEcCCcee--EEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee-eecc
Q 001403 801 ALSKNDAYLFSAS-GGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLEG 876 (1084)
Q Consensus 801 ~~s~dg~~l~~~s-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~-~l~~ 876 (1084)
+++|++..+++|. |+.+++|.+..+.. ...+..|.++|++++||| |+.+||+|...+.+.+||+.+.+... .+.-
T Consensus 450 Av~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~F 528 (603)
T KOG0318|consen 450 AVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAF 528 (603)
T ss_pred EEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeee
Confidence 9999999999998 79999999986553 345667999999999999 99999999999999999999987643 3344
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEc
Q 001403 877 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 956 (1084)
Q Consensus 877 h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~ 956 (1084)
|...|.+++|+|+.+++|||+-|..|.||+++... ..+.....|.. .|..+.|-.+...+-+|.|-.|++|.+
T Consensus 529 HtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~----~~i~iknAH~~---gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 529 HTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA----KHIIIKNAHLG---GVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred eeeeEEEEEeCCCceEEEeccccceEEEEEccChh----hheEecccccc---CceeEEEecCceEEeccCcceeEEecc
Confidence 99999999999999999999999999999999733 22445555655 699999999888888899999999987
Q ss_pred C
Q 001403 957 E 957 (1084)
Q Consensus 957 ~ 957 (1084)
.
T Consensus 602 ~ 602 (603)
T KOG0318|consen 602 T 602 (603)
T ss_pred c
Confidence 4
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=413.29 Aligned_cols=568 Identities=15% Similarity=0.183 Sum_probs=442.8
Q ss_pred cCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCcc
Q 001403 343 HPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD 422 (1084)
Q Consensus 343 spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~ 422 (1084)
+..|+++|+.. ...|.+||+.++....... ...-...|+|++-+||.-.||+|..||.|+||+..++..
T Consensus 31 ~~~Gr~va~~a----------~E~vn~WdlRtge~~~~l~-~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~ 99 (888)
T KOG0306|consen 31 SGKGRAVAVSA----------LEQVNIWDLRTGEIEKKLI-LLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEI 99 (888)
T ss_pred cCCCcEEEEec----------cccEeEEeeecchhhhhhh-hhcccceEEEeeccCCcceEEEEecCceEEeeccCCCce
Confidence 34688888721 1679999999884332211 223446999999999999999999999999999998754
Q ss_pred ccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCe
Q 001403 423 ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 502 (1084)
Q Consensus 423 ~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~ 502 (1084)
.. .+.+|..+|+++.|...|. .|+|||.|+.|.+||+-...-+.++.||.+.|+.+-|.. +..++++.+.|+.
T Consensus 100 ~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~--~~~~lvS~sKDs~ 172 (888)
T KOG0306|consen 100 LI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN--GDSFLVSVSKDSM 172 (888)
T ss_pred ee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC--CCeEEEEeccCce
Confidence 43 7889999999999999999 899999999999999998888999999999999988843 4579999999999
Q ss_pred EEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc-------e-----Eeeeeecccccc
Q 001403 503 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-------A-----IKRTYQGLQLQH 570 (1084)
Q Consensus 503 i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~-------~-----~~~~~~~~~~~~ 570 (1084)
|++||+++..+..+...+...++++++.+ +.+++++. ++.+.+|++... . ...++.-. ..
T Consensus 173 iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rq--sk 244 (888)
T KOG0306|consen 173 IKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRYISTKLRGTFIRQ--SK 244 (888)
T ss_pred EEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeecccccccccccceeeccceeeec--cC
Confidence 99999999999999999999999999988 67777765 455999988210 0 01111111 12
Q ss_pred CceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE-------------EE--cC-----------------CCCCCCcc
Q 001403 571 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT-------------TI--DA-----------------GGGLPENP 618 (1084)
Q Consensus 571 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------~~--~~-----------------~~~~~~v~ 618 (1084)
+....+...++++++++-+.|..+.++.+.+.+.+. .. +. -.....+.
T Consensus 245 ~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kik 324 (888)
T KOG0306|consen 245 GREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIK 324 (888)
T ss_pred CceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhhee
Confidence 345556677888899999999999999886532110 00 00 00112355
Q ss_pred eEEEecCCC---EEEEEECCCeEEEEEcCCCCee---------eeccccccceeEEEEcCCCceeeeeccCceeEecCCC
Q 001403 619 RICFNKNGT---LLAVIANENRIKILETPESNSV---------DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP 686 (1084)
Q Consensus 619 ~v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~ 686 (1084)
++.|.|.+. .|+. -.++++..|.++..... -.+.+|...|.++.++.+
T Consensus 325 s~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d------------------- 384 (888)
T KOG0306|consen 325 SFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD------------------- 384 (888)
T ss_pred EEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC-------------------
Confidence 677777543 3333 56788888888752222 345678888888888733
Q ss_pred CCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCccc
Q 001403 687 KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 766 (1084)
Q Consensus 687 s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 766 (1084)
...++ .+..+++++|+..+....... ..+.+.+..|-|.+++++.|..+|.+.+||+.....
T Consensus 385 ---~~~~~-Sga~~SikiWn~~t~kciRTi--------~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l------ 446 (888)
T KOG0306|consen 385 ---SILLA-SGAGESIKIWNRDTLKCIRTI--------TCGYILASKFVPGDRYIVLGTKNGELQVFDLASASL------ 446 (888)
T ss_pred ---ceeee-ecCCCcEEEEEccCcceeEEe--------ccccEEEEEecCCCceEEEeccCCceEEEEeehhhh------
Confidence 23333 334478999998743222111 334788899999999999999999999998765432
Q ss_pred ceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCC-----ceeEE--------EEc
Q 001403 767 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMT-----FKTIL--------TIM 832 (1084)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~-----~~~~~--------~~~ 832 (1084)
+-. . .+|.+.+..++.+||++.+++++ |.+|++||..- |...+ ++.
T Consensus 447 ----------------~Et--i--~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe 506 (888)
T KOG0306|consen 447 ----------------VET--I--RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE 506 (888)
T ss_pred ----------------hhh--h--hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe
Confidence 111 1 15999999999999999999998 89999999741 22211 222
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 001403 833 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 912 (1084)
Q Consensus 833 ~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~ 912 (1084)
-...|.|+.+|| |+++||++--|.+|+||-+++-+..-.+.||.-+|.|+..|||+++++|||.|+.|+||-++-|.
T Consensus 507 -l~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD- 583 (888)
T KOG0306|consen 507 -LEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD- 583 (888)
T ss_pred -ccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch-
Confidence 346899999999 99999999999999999999999999999999999999999999999999999999999999976
Q ss_pred eeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCC
Q 001403 913 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 991 (1084)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d 991 (1084)
|-+.+-+|.. .|.++.|-|...++.+ |.|+.|+-||....+++.. +.+|...|++++.+|+|.++++++.|
T Consensus 584 ----CHKS~fAHdD---Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~-L~~H~~ev~cLav~~~G~~vvs~shD 655 (888)
T KOG0306|consen 584 ----CHKSFFAHDD---SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQK-LDGHHSEVWCLAVSPNGSFVVSSSHD 655 (888)
T ss_pred ----hhhhhhcccC---ceeEEEEcccceeEEEecCcceEEeechhhhhhhee-eccchheeeeeEEcCCCCeEEeccCC
Confidence 5555666665 8999999999888877 7999999999999999888 56899999999999999999999999
Q ss_pred CcEEEEEcCCCcee
Q 001403 992 GTLSIHEASNLEVQ 1005 (1084)
Q Consensus 992 g~i~vwd~~~~~~~ 1005 (1084)
.+|++|.-....++
T Consensus 656 ~sIRlwE~tde~~~ 669 (888)
T KOG0306|consen 656 KSIRLWERTDEILI 669 (888)
T ss_pred ceeEeeeccCccee
Confidence 99999997765443
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-50 Score=394.08 Aligned_cols=333 Identities=20% Similarity=0.313 Sum_probs=303.0
Q ss_pred cceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
..|...+.||.+.|.|++|||+|++||+|+-| .++++||+.+....+. .++|...|.|++|||||+.|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD---------~TvR~WD~~TeTp~~t---~KgH~~WVlcvawsPDgk~i 172 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGD---------TTVRLWDLDTETPLFT---CKGHKNWVLCVAWSPDGKKI 172 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCC---------ceEEeeccCCCCccee---ecCCccEEEEEEECCCcchh
Confidence 56778899999999999999999999999766 9999999998877765 78999999999999999999
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeec-----CCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-----PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 478 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~-----d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~ 478 (1084)
|+|+.||+|++||.++|+++.. .+.+|...|++++|-| ..+ +|++++.||+|+|||+..+.++..+.+|+.
T Consensus 173 ASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~lsgHT~ 248 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRTLSGHTA 248 (480)
T ss_pred hccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEEeccCcc
Confidence 9999999999999999987654 6889999999999965 556 799999999999999999999999999999
Q ss_pred cEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEc-----------CCC--------------
Q 001403 479 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-----------ANG-------------- 533 (1084)
Q Consensus 479 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s-----------~d~-------------- 533 (1084)
+|+|+.| .++ .++++++.|++|++|+...+.....+.+|.+.|..++.+ |.+
T Consensus 249 ~VTCvrw--GG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al 325 (480)
T KOG0271|consen 249 SVTCVRW--GGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKAL 325 (480)
T ss_pred ceEEEEE--cCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHH
Confidence 9999999 333 499999999999999999988899999999999998887 223
Q ss_pred -----------CEEEEEeeCCCCCeeEEEecCCC-ceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 001403 534 -----------RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 601 (1084)
Q Consensus 534 -----------~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 601 (1084)
.+|++++. +.++.+|+... .+++..+.+|+ .-|+.+.|+||++++++++-|..|++||.++
T Consensus 326 ~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq---~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 326 ERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQ---ALVNHVSFSPDGRYIASASFDKSVKLWDGRT 398 (480)
T ss_pred HHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchh---hheeeEEECCCccEEEEeecccceeeeeCCC
Confidence 34888875 77799999764 45788899999 8999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeE
Q 001403 602 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 681 (1084)
Q Consensus 602 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~ 681 (1084)
|+.+..+.+|- ..|+.++|+.|.++|++++.|.++++|++.+.+....+.+|.+.|.++.++
T Consensus 399 Gk~lasfRGHv--~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws---------------- 460 (480)
T KOG0271|consen 399 GKFLASFRGHV--AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS---------------- 460 (480)
T ss_pred cchhhhhhhcc--ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec----------------
Confidence 99999999664 479999999999999999999999999999999999999999999999997
Q ss_pred ecCCCCCCCCccceecccCcccccc
Q 001403 682 VNEDPKEDVKPEISVEAENKSEVEK 706 (1084)
Q Consensus 682 ~~~~~s~~~~~l~~~~~d~~i~~w~ 706 (1084)
|||..+++|+.|..+++|.
T Consensus 461 ------pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 ------PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ------CCCceeecCCCceEEEeec
Confidence 7889999999999999995
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=407.49 Aligned_cols=586 Identities=14% Similarity=0.142 Sum_probs=448.5
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCC
Q 001403 398 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 477 (1084)
Q Consensus 398 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~ 477 (1084)
..|+++|+... ..|.+||+.+|+..+.+.. ......|+|++-++|.- +||.|..||.|+||+..++..+.++.+|.
T Consensus 32 ~~Gr~va~~a~-E~vn~WdlRtge~~~~l~~-~~~k~evt~l~~~~d~l--~lAVGYaDGsVqif~~~s~~~~~tfngHK 107 (888)
T KOG0306|consen 32 GKGRAVAVSAL-EQVNIWDLRTGEIEKKLIL-LKKKAEVTCLRSSDDIL--LLAVGYADGSVQIFSLESEEILITFNGHK 107 (888)
T ss_pred CCCcEEEEecc-ccEeEEeeecchhhhhhhh-hcccceEEEeeccCCcc--eEEEEecCceEEeeccCCCceeeeecccc
Confidence 35887776433 3499999999965443322 23346899998888877 89999999999999999999999999999
Q ss_pred CcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc
Q 001403 478 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~ 557 (1084)
..|+.+.| +..|..|++||.|+.|.+||+-.....+.+.+|...|+.+-|..+.+++++++. ++.|.+||+.+.
T Consensus 108 ~AVt~l~f--d~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sK----Ds~iK~WdL~tq 181 (888)
T KOG0306|consen 108 AAVTTLKF--DKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSK----DSMIKFWDLETQ 181 (888)
T ss_pred cceEEEEE--cccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEecc----CceEEEEecccc
Confidence 99999999 567889999999999999999999999999999999999999998999999986 788999999999
Q ss_pred eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC-------e-----EEEEEcCCCCCCCcceEEEecC
Q 001403 558 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------Q-----LLTTIDAGGGLPENPRICFNKN 625 (1084)
Q Consensus 558 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~-----~~~~~~~~~~~~~v~~v~~s~~ 625 (1084)
.+..+.-.|. +.++++++.+ +.+++++.|+.+++|++... . ...++...+ ......++..++
T Consensus 182 hCf~Thvd~r---~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqs-k~R~i~l~~d~s 255 (888)
T KOG0306|consen 182 HCFETHVDHR---GEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQS-KGREINLVTDFS 255 (888)
T ss_pred eeeeEEeccc---ceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeecc-CCceeEEeecCc
Confidence 9998888888 9999999987 78999999999999998321 1 111111111 122445667778
Q ss_pred CCEEEEEECCCeEEEEEcCCCCeeeec--------ccccc--c-eeEEEEc------CCCceeeeeccCceeEecCCCCC
Q 001403 626 GTLLAVIANENRIKILETPESNSVDAA--------GVLSD--N-LRKLSVN------PISTVTGAGIANGSVSVNEDPKE 688 (1084)
Q Consensus 626 ~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~~--~-i~~~~~~------p~~~~~~~~~~~~~~~~~~~~s~ 688 (1084)
++++++-+.|..+.++.+.+...+... +.+.. . -..+..+ +.... -......++.+.+. +
T Consensus 256 ~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~i-r~~~kiks~dv~~~--~ 332 (888)
T KOG0306|consen 256 DRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETI-RTSAKIKSFDVTPS--G 332 (888)
T ss_pred ccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhe-echhheeEEEEEec--C
Confidence 889999999999999988754222111 00000 0 0000000 00000 00000001111111 1
Q ss_pred CC-CccceecccCccccccceeecCc---cceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCc
Q 001403 689 DV-KPEISVEAENKSEVEKPLFARPS---ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 764 (1084)
Q Consensus 689 ~~-~~l~~~~~d~~i~~w~~~~~~~~---~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 764 (1084)
.. +.++. -.++++..|.++..... ....-.+...+|...|.++++|.+...+++++. +.+++
T Consensus 333 ~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~Siki------------ 398 (888)
T KOG0306|consen 333 GTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKI------------ 398 (888)
T ss_pred CcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCC-CcEEE------------
Confidence 11 23333 55677777776652111 112222334579999999999999875555544 45555
Q ss_pred ccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEE
Q 001403 765 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAF 843 (1084)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 843 (1084)
|+..+.+|+.+.. ...+.+..|-|.++++++|. .|.+.+||+.+...+.+++.|.+.|.+++.
T Consensus 399 ----------Wn~~t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~ 462 (888)
T KOG0306|consen 399 ----------WNRDTLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISL 462 (888)
T ss_pred ----------EEccCcceeEEec------cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeee
Confidence 5566677676653 34788999999999999998 599999999999999999999999999999
Q ss_pred cCCCCcEEEEEeCCCeEEEEEcCC-----ceee--------eeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001403 844 NPHDNNVIAIGMDDSTILIYNARS-----SEVI--------SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 910 (1084)
Q Consensus 844 s~~d~~~la~g~~dg~i~iwd~~~-----~~~~--------~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~ 910 (1084)
+| |++.+++|+.|.+|++||..- |... .+++ -.+.|.|+.+||||++||.+=-|.+|+||-+++
T Consensus 463 ~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt- 539 (888)
T KOG0306|consen 463 SP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT- 539 (888)
T ss_pred cC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecc-
Confidence 99 899999999999999999752 1111 1122 356799999999999999999999999999998
Q ss_pred ceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEe
Q 001403 911 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 989 (1084)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 989 (1084)
.+..-.+.||.- +|.++..|||++++++ +.|.+|++|-+.-|.|...++ +|...|.++.|.|+..+++++|
T Consensus 540 ----lKFflsLYGHkL---PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-AHdDSvm~V~F~P~~~~FFt~g 611 (888)
T KOG0306|consen 540 ----LKFFLSLYGHKL---PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-AHDDSVMSVQFLPKTHLFFTCG 611 (888)
T ss_pred ----eeeeeeeccccc---ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-cccCceeEEEEcccceeEEEec
Confidence 556667788887 9999999999999999 589999999999999999855 7999999999999999999999
Q ss_pred CCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 990 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 990 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
.|+.|+-||-...+.+..+.. |...|+ |++.+| +|.++++++.|.+|++|+..+
T Consensus 612 KD~kvKqWDg~kFe~iq~L~~--------H~~ev~--cLav~~-~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 612 KDGKVKQWDGEKFEEIQKLDG--------HHSEVW--CLAVSP-NGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred CcceEEeechhhhhhheeecc--------chheee--eeEEcC-CCCeEEeccCCceeEeeeccC
Confidence 999999999999988877661 345566 456667 589999999999999999766
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-50 Score=392.61 Aligned_cols=367 Identities=20% Similarity=0.289 Sum_probs=294.9
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
+.||.+.|.|++|||+|+.||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 77899999999999999999999999999999999986554 7889999999999999999 899999999999999
Q ss_pred CCCCcee-eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001403 464 AVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 464 ~~~g~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
.++|+++ ..+.+|...|++++|.|-. ..|..++|++++.
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~sk- 225 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSSK- 225 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceecccC-
Confidence 9999876 6789999999999996532 2355667777764
Q ss_pred CCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEE
Q 001403 543 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 622 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 622 (1084)
++.++|||+..+.++..+.+|. .+|+|+.|.-+| ++++|+.|++|++|+...|.+...+.+|.+ .|+.++.
T Consensus 226 ---Dg~vrIWd~~~~~~~~~lsgHT---~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lal 296 (480)
T KOG0271|consen 226 ---DGSVRIWDTKLGTCVRTLSGHT---ASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLAL 296 (480)
T ss_pred ---CCCEEEEEccCceEEEEeccCc---cceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeec
Confidence 5558888888888999999999 999999998764 899999999999999999999999998877 5888888
Q ss_pred ecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcc
Q 001403 623 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 702 (1084)
Q Consensus 623 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 702 (1084)
+.|- .|-+|..|.+=+-....+...-..+... ..
T Consensus 297 sTdy-~LRtgaf~~t~~~~~~~se~~~~Al~rY-~~-------------------------------------------- 330 (480)
T KOG0271|consen 297 STDY-VLRTGAFDHTGRKPKSFSEEQKKALERY-EA-------------------------------------------- 330 (480)
T ss_pred cchh-hhhccccccccccCCChHHHHHHHHHHH-HH--------------------------------------------
Confidence 7543 2223332221111000000000000000 00
Q ss_pred ccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCc
Q 001403 703 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 782 (1084)
Q Consensus 703 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1084)
..-..+.++++++.|.++.+|+-... .++
T Consensus 331 ------------------------------~~~~~~erlVSgsDd~tlflW~p~~~---------------------kkp 359 (480)
T KOG0271|consen 331 ------------------------------VLKDSGERLVSGSDDFTLFLWNPFKS---------------------KKP 359 (480)
T ss_pred ------------------------------hhccCcceeEEecCCceEEEeccccc---------------------ccc
Confidence 00012345666666666666652111 000
Q ss_pred cccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEE
Q 001403 783 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 861 (1084)
Q Consensus 783 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~ 861 (1084)
+. .+. +|..-|+.+.||||++++|+++ |..|++||..+|+.+.+|++|-+.|..++|+. |.++|++|+.|.+++
T Consensus 360 i~--rmt--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLK 434 (480)
T KOG0271|consen 360 IT--RMT--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLK 434 (480)
T ss_pred hh--hhh--chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEE
Confidence 11 112 4999999999999999999999 99999999999999999999999999999999 999999999999999
Q ss_pred EEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001403 862 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906 (1084)
Q Consensus 862 iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd 906 (1084)
+|++.+.++...+.||.++|.++.|+|||..+++|+.|+.+++|.
T Consensus 435 vw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 435 VWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999999999995
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=370.93 Aligned_cols=623 Identities=13% Similarity=0.145 Sum_probs=421.4
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe--CCCEEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY--SKHIVQ 413 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~--~dg~v~ 413 (1084)
.-..++.+|-..++|.- +...|.+|+...+.+.+. +..|..+++|++||++|+|+|+|- ....++
T Consensus 39 ~~~gLa~~p~Sgl~aYp----------AGCvVVlfn~~~~tQ~hl---vnssRk~~t~vAfS~~GryvatGEcG~~pa~k 105 (1080)
T KOG1408|consen 39 NANGLASVPCSGLCAYP----------AGCVVVLFNVDSCTQSHL---VNSSRKPLTCVAFSQNGRYVATGECGRTPASK 105 (1080)
T ss_pred cCCcccccccccceeec----------cCcEEEEEcccccchhhe---ecccCcceeEEEEcCCCcEEEecccCCCccce
Confidence 34567777877777762 127899999988776543 566888999999999999999984 566799
Q ss_pred EEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC--CCcEEEEECCCCceeeEeccCCCcEEEEeecccCCC
Q 001403 414 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 491 (1084)
Q Consensus 414 iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~--d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~ 491 (1084)
||++.....+. ++..|+..|+|++|+|.++ ++++.+. |-.|.+||++.......- .-...|..++| +++|
T Consensus 106 Vw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~f--sEdg 177 (1080)
T KOG1408|consen 106 VWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVAF--SEDG 177 (1080)
T ss_pred eeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEEEE--ccCC
Confidence 99999876555 7889999999999999999 7777664 667889987754332221 13456788888 6788
Q ss_pred cEEEEEecCCeEEEEECCCCCceE---eecCCCC--------eEEEEEEc----CCCCEEEEEeeCCCCCeeEEEecCCC
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARV---DYDAPGL--------GCTRMAYS----ANGRRLFSCGTSKEGESFLVEWNESE 556 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~--------~i~~~~~s----~d~~~l~~~~~~~~~~~~i~~wd~~~ 556 (1084)
.++++.+ ...|++|.++...... .+.+... ...+++.- .+..+.++. .|.+.-+ .+
T Consensus 178 SYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhLvEF--Ss 248 (1080)
T KOG1408|consen 178 SYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHLVEF--SS 248 (1080)
T ss_pred ceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccceeee--ch
Confidence 8988876 4689999988665211 1111100 00111110 011111111 1112111 11
Q ss_pred ceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcC----------------------CCCC
Q 001403 557 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA----------------------GGGL 614 (1084)
Q Consensus 557 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------~~~~ 614 (1084)
.+++..+-.-. .....|++.+ .++|++|+.+|.|++|+..+-....+++. ....
T Consensus 249 RRLLDKWVqcR--TTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~f 324 (1080)
T KOG1408|consen 249 RRLLDKWVQCR--TTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIF 324 (1080)
T ss_pred hhhhhhhhhhh--ccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccC
Confidence 22211111111 1234555554 57999999999999999877544443321 1122
Q ss_pred CCcceEEEecCCCEEEEEECCCeEEEEEcCCCCee---eeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCC
Q 001403 615 PENPRICFNKNGTLLAVIANENRIKILETPESNSV---DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 691 (1084)
Q Consensus 615 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~ 691 (1084)
+...++.|++....|.+...|..++|||+..-..+ ..+-.|...|+.+..-|...... .... .|. .
T Consensus 325 PD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~-----~~ac-----lp~-~ 393 (1080)
T KOG1408|consen 325 PDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSP-----TAAC-----LPR-G 393 (1080)
T ss_pred CceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCc-----cccc-----CCc-c
Confidence 33456889999999999999999999999865433 33446777777776655321100 0000 122 2
Q ss_pred ccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecC
Q 001403 692 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP 771 (1084)
Q Consensus 692 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 771 (1084)
-+++++.|++||+|++........+... .++.+-..++. .|++..+.. ...
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRN-------------ils~~l~ki~y--~d~~~q~~~--------------d~~ 444 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRN-------------ILSANLSKIPY--EDSTQQIMH--------------DAS 444 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecc-------------cchhhhhcCcc--ccCchhhhh--------------hcc
Confidence 3889999999999998753322221110 01111100111 111110000 000
Q ss_pred CeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCC--CC
Q 001403 772 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH--DN 848 (1084)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~--d~ 848 (1084)
.-++|-.... . ......+.++++||+|++||+|+ .|.++||++...+....+..|..+|.|+.||.. ..
T Consensus 445 ~~~fdka~~s------~--~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~ 516 (1080)
T KOG1408|consen 445 AGIFDKALVS------T--CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTN 516 (1080)
T ss_pred CCcccccchh------h--cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhh
Confidence 1111111000 0 12566889999999999999998 599999999999999999999999999999863 35
Q ss_pred cEEEEEeCCCeEEEEEcCCc-eeeeeecccccCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCc
Q 001403 849 NVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM 925 (1084)
Q Consensus 849 ~~la~g~~dg~i~iwd~~~~-~~~~~l~~h~~~V~~l~~spd~--~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 925 (1084)
++||+++.|.-|+|||+... .++.++.+|+..|+++.|.-.| ..++++|.|+.|.+--...... . .+.....+.
T Consensus 517 kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~--g-~~f~r~t~t 593 (1080)
T KOG1408|consen 517 KLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS--G-RLFPRHTQT 593 (1080)
T ss_pred HhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccC--c-eeccccccc
Confidence 79999999999999999753 5778999999999999999887 7899999999776533331110 0 111111111
Q ss_pred cCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeecCC--CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001403 926 TLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 926 ~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
.....+..++..|..+++++ +.|..|+||++.+|+..+.+...| .+..-.+...|.|-||++...|.++.++|..+|
T Consensus 594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence 11235889999999999999 699999999999999988866544 577788899999999999999999999999999
Q ss_pred ceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 1003 EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
++++++..+.-..++ +.|.+ |...|++++.||+|.||.++-
T Consensus 674 EcvA~m~GHsE~VTG----------~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 674 ECVAQMTGHSEAVTG----------VKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhhhhhcCcchheee----------eeecc-cchhheeecCCceEEEEECch
Confidence 999988855444444 77898 689999999999999999864
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=356.48 Aligned_cols=511 Identities=15% Similarity=0.184 Sum_probs=382.8
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 407 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~ 407 (1084)
+.+..|...++++||||+|+|+|+ |++.....++||++.......+ +.+|+-.|+|++|+|.++|+++.+
T Consensus 72 hlvnssRk~~t~vAfS~~Gryvat-------GEcG~~pa~kVw~la~h~vVAE---fvdHKY~vtcvaFsp~~kyvvSVG 141 (1080)
T KOG1408|consen 72 HLVNSSRKPLTCVAFSQNGRYVAT-------GECGRTPASKVWSLAFHGVVAE---FVDHKYNVTCVAFSPGNKYVVSVG 141 (1080)
T ss_pred heecccCcceeEEEEcCCCcEEEe-------cccCCCccceeeeeccccchhh---hhhccccceeeeecCCCcEEEeec
Confidence 345677789999999999999998 5666668999999998876655 678999999999999999999876
Q ss_pred C--CCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceee-------------E
Q 001403 408 S--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-------------S 472 (1084)
Q Consensus 408 ~--dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~-------------~ 472 (1084)
. |-.|.+||+.-..... -..-...|..++|+.||. +++|.+ ...|++|.++.++... .
T Consensus 142 sQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~ 214 (1080)
T KOG1408|consen 142 SQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGN 214 (1080)
T ss_pred cccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchhhhccc
Confidence 5 4467889887543222 123456799999999999 788887 6789999987665210 0
Q ss_pred e------------------------ccC-----------------CCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC
Q 001403 473 F------------------------EGH-----------------GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 511 (1084)
Q Consensus 473 ~------------------------~~h-----------------~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 511 (1084)
+ .|| ...-.|++. +..+++.|+.+|+|++++..+.
T Consensus 215 lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g~vrlFnp~tL 290 (1080)
T KOG1408|consen 215 LRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKGMVRLFNPETL 290 (1080)
T ss_pred cccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccceeeecCcchh
Confidence 0 000 011223443 2368999999999999987654
Q ss_pred CceEeecC------------------------CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccc
Q 001403 512 GARVDYDA------------------------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 567 (1084)
Q Consensus 512 ~~~~~~~~------------------------~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 567 (1084)
....++.. .-....++.|++....|.+... +..+++||++.-+.+......-
T Consensus 291 ~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~~kvgk~~s~l 366 (1080)
T KOG1408|consen 291 DYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVRDVNKVGKCSSML 366 (1080)
T ss_pred hhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEeccccccccceeeee
Confidence 32221110 0113457889999999988876 6679999998755443322221
Q ss_pred cccCceEEEEEcCC-----------CCEEEEEECCCcEEEEECCCCeEEEEE-------------c--------------
Q 001403 568 LQHNSVSVVHFDTA-----------KDQILAAGDDHVIKIWDMNKVQLLTTI-------------D-------------- 609 (1084)
Q Consensus 568 ~~~~~v~~~~~s~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------~-------------- 609 (1084)
.|...|+.+.--|- ...+++++.|++|++||+..+..-..+ .
T Consensus 367 yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~ 446 (1080)
T KOG1408|consen 367 YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAG 446 (1080)
T ss_pred eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCC
Confidence 22255666544331 235889999999999998762111100 0
Q ss_pred --------CCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeE
Q 001403 610 --------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 681 (1084)
Q Consensus 610 --------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~ 681 (1084)
.-+....+.+++.+|+|++||+|..-|.++||++.+.+....+..|...|.|+.++..
T Consensus 447 ~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p-------------- 512 (1080)
T KOG1408|consen 447 IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFP-------------- 512 (1080)
T ss_pred cccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCc--------------
Confidence 0011234789999999999999999999999999999999999999999999999832
Q ss_pred ecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCC--CeEEEeecCCceEEeeccCCc
Q 001403 682 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG--QAIFALASNGVHLMWRWPRND 759 (1084)
Q Consensus 682 ~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~~~~~dg~i~vw~~~~~~ 759 (1084)
.-..+++++++.|.-|.++|.. +.+.+.....+|...|+++.|...| ..+++++.|..|.+-..++.
T Consensus 513 -----~~~~kLLASasrdRlIHV~Dv~-----rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~- 581 (1080)
T KOG1408|consen 513 -----VLTNKLLASASRDRLIHVYDVK-----RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKA- 581 (1080)
T ss_pred -----hhhhHhhhhccCCceEEEEecc-----cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccc-
Confidence 1235789999999999999975 2233333345699999999999888 77899999977654221110
Q ss_pred cCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcC---CC
Q 001403 760 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP---PS 835 (1084)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~---~~ 835 (1084)
...+++--.+.. .....+..+++.|..++++++. |..|+||++++|+..+.|++ |.
T Consensus 582 ----------~~g~~f~r~t~t----------~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~e 641 (1080)
T KOG1408|consen 582 ----------SSGRLFPRHTQT----------LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHE 641 (1080)
T ss_pred ----------cCceeccccccc----------cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCC
Confidence 011111111000 1356788999999999999998 89999999999999999986 44
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001403 836 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 836 ~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~ 909 (1084)
+....+...| .|.|||+...|+++.++|..+|+++.++.||+..|+.+.|++|-+.|++.+.||.|.||.+..
T Consensus 642 G~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 642 GDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 6788899999 899999999999999999999999999999999999999999999999999999999999875
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=340.02 Aligned_cols=283 Identities=20% Similarity=0.288 Sum_probs=265.9
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC--CCEEEEEeCC
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--GSLLGVAYSK 409 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd--g~~las~~~d 409 (1084)
|.+.+|..+.||+|+..||+|+|+ |.++||...++... ..+.||+..|.++.|+|. +..||+|+.|
T Consensus 173 gd~rPis~~~fS~ds~~laT~sws---------G~~kvW~~~~~~~~---~~l~gH~~~v~~~~fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWS---------GLVKVWSVPQCNLL---QTLRGHTSRVGAAVFHPVDSDLNLATASAD 240 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecC---------CceeEeecCCccee---EEEeccccceeeEEEccCCCccceeeeccC
Confidence 667799999999999999999999 99999999998443 338999999999999996 7799999999
Q ss_pred CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccC
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 489 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~ 489 (1084)
|+|++|++++...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||++++..+.-.+||...|.+++|++
T Consensus 241 gtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-- 313 (459)
T KOG0272|consen 241 GTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-- 313 (459)
T ss_pred CceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhcccccccceeEecC--
Confidence 999999999986665 7889999999999999999 899999999999999999999999999999999999955
Q ss_pred CCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccc
Q 001403 490 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569 (1084)
Q Consensus 490 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 569 (1084)
||.+++||+.|..-+|||++++.++..+.+|..+|.+++|+|+|..|++|+. |++++|||++..+.+..+..|.
T Consensus 314 DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~ly~ipAH~-- 387 (459)
T KOG0272|consen 314 DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSELYTIPAHS-- 387 (459)
T ss_pred CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccceeccccc--
Confidence 7789999999999999999999999999999999999999999999999986 7789999999999999999999
Q ss_pred cCceEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEE
Q 001403 570 HNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 570 ~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
+-|+.+.|+| .|.+|++++.|++++||...+..+++.+.+|.. .|.++.+++|+..+++++.|+++++|.
T Consensus 388 -nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 388 -NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred -chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeecc
Confidence 8999999998 688999999999999999999999999998866 599999999999999999999999995
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=332.73 Aligned_cols=575 Identities=15% Similarity=0.161 Sum_probs=428.2
Q ss_pred CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-ceeeEeccCC
Q 001403 399 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHG 477 (1084)
Q Consensus 399 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g-~~~~~~~~h~ 477 (1084)
.+..+++.+-+.+..+||.+.-..+ ..-..+...|+|++-..+ ++++++ .+.|.+|- .| ...+.+..|.
T Consensus 45 ~~~~~vtt~vgksfqvYd~~kl~ll---~vs~~lp~~I~alas~~~----~vy~A~-g~~i~~~~--rgk~i~~~~~~~~ 114 (910)
T KOG1539|consen 45 GSTFYVTTCVGKSFQVYDVNKLNLL---FVSKPLPDKITALASDKD----YVYVAS-GNKIYAYA--RGKHIRHTTLLHG 114 (910)
T ss_pred CceEEEEEecCceEEEEeccceEEE---EecCCCCCceEEEEecCc----eEEEec-CcEEEEEE--ccceEEEEecccc
Confidence 4567888899999999998875433 244568888999886544 344444 44577775 45 4556778888
Q ss_pred CcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCce-----EeecCCCCeEEEEEEcCC--CCEEEEEeeCCCCCeeEE
Q 001403 478 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----VDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLV 550 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-----~~~~~~~~~i~~~~~s~d--~~~l~~~~~~~~~~~~i~ 550 (1084)
..|.-+.. =|..++++..++.+.+|+....+.. ...+.....|+++. +|. =+.++.|+. .|.+.
T Consensus 115 a~v~~l~~----fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~----~G~lq 185 (910)
T KOG1539|consen 115 AKVHLLLP----FGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSS----QGRLQ 185 (910)
T ss_pred ceEEEEee----ecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeec----CCcEE
Confidence 88887765 3458999999999999998874211 11222233366554 343 244666664 66799
Q ss_pred EecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCE-E
Q 001403 551 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL-L 629 (1084)
Q Consensus 551 ~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l 629 (1084)
+|++++++.+.+++++. ..|+++.=+|-=..++.|..+|+|.+++++.++.+..++.. ...|.+++|.-||+. +
T Consensus 186 l~Nvrt~K~v~~f~~~~---s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d--~g~VtslSFrtDG~p~l 260 (910)
T KOG1539|consen 186 LWNVRTGKVVYTFQEFF---SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD--WGRVTSLSFRTDGNPLL 260 (910)
T ss_pred EEEeccCcEEEEecccc---cceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc--ccceeEEEeccCCCeeE
Confidence 99999999999999988 89999999999899999999999999999999999999875 235999999999875 5
Q ss_pred EEEECCCeEEEEEcCCCCeeeecc-ccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccce
Q 001403 630 AVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 630 ~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
++++..|.+.+||++..+.+...+ .|.+.+....+. +....+++++.|+.+++|-.+
T Consensus 261 as~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl----------------------~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 261 ASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFL----------------------PGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred EeccCCceEEEEEcCCCeeeeeeeccccCCcccceec----------------------CCCceEeeccCCCceeEEEee
Confidence 556667999999999988877766 666777766665 456678888999999999887
Q ss_pred eecCccceeeccCCccccceEEEEEEe-cCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCcccccc
Q 001403 709 FARPSECQSLLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND 787 (1084)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1084)
.++.... +.....+|..+..++.|. .+|..++.++.|++.+.+++........-.. ..+...+...-...
T Consensus 319 ~~dg~pR--~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~~~~~ 389 (910)
T KOG1539|consen 319 SGDGVPR--LLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKVNVFS 389 (910)
T ss_pred CCCCcch--heeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccccccc
Confidence 5544321 122234699999999998 7889999999999998887754432111100 11111111010000
Q ss_pred CcCCCCCCCccEEEecCCC----CEEEEEe--CCeEEEEEcCCcee-EEEEc-----CCCCCeEEEEEcCCCCcEEEEEe
Q 001403 788 TTDSNSQEAVPCFALSKND----AYLFSAS--GGVISLYIVMTFKT-ILTIM-----PPSPTATSLAFNPHDNNVIAIGM 855 (1084)
Q Consensus 788 ~~~~~~~~~v~~l~~s~dg----~~l~~~s--dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~l~~s~~d~~~la~g~ 855 (1084)
+..-.-.+|..+++.-.. .-++++. +..++.|++..... ...+. .....+++++.++ .|++.+.|+
T Consensus 390 -~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~ 467 (910)
T KOG1539|consen 390 -TEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGY 467 (910)
T ss_pred -hhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEec
Confidence 000023355556554321 1233333 57799999976544 23333 2336789999999 999999999
Q ss_pred CCCeEEEEEcCCceeeeee---cccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCce
Q 001403 856 DDSTILIYNARSSEVISKL---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 932 (1084)
Q Consensus 856 ~dg~i~iwd~~~~~~~~~l---~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 932 (1084)
..|.|.+|++.+|-....+ ..|.++|++++...-++.+++++.+|.+++||........ ... ....+.
T Consensus 468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~-----~l~----l~~~~~ 538 (910)
T KOG1539|consen 468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK-----SLR----LGSSIT 538 (910)
T ss_pred cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee-----eec----cCCCcc
Confidence 9999999999999888888 5899999999998888999999999999999999854222 211 112578
Q ss_pred EEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccc
Q 001403 933 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1011 (1084)
Q Consensus 933 ~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~ 1011 (1084)
.+..+.....+|++ .|-.|+++|+.+.+.++. +.+|...|++++|||||++|++++.|++||+||+.++.++..+...
T Consensus 539 ~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~-f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd 617 (910)
T KOG1539|consen 539 GIVYHRVSDLLAIALDDFSIRVVDVVTRKVVRE-FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD 617 (910)
T ss_pred eeeeeehhhhhhhhcCceeEEEEEchhhhhhHH-hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC
Confidence 88888888888885 677899999999998887 6689999999999999999999999999999999999999777611
Q ss_pred cccCCCCcccceeeeEEEECCCCCCEEEEEeCC-CcEEEEcC
Q 001403 1012 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEP 1052 (1084)
Q Consensus 1012 ~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~d-g~v~vw~~ 1052 (1084)
..+.+++|+| +|.+||++..| .-|++|.=
T Consensus 618 -----------~~~~sls~SP-ngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 618 -----------SPCTSLSFSP-NGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred -----------CcceeeEECC-CCCEEEEEEecCceEEEEEc
Confidence 2246789999 59999999999 67999973
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=335.79 Aligned_cols=285 Identities=17% Similarity=0.258 Sum_probs=266.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC
Q 001403 386 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 465 (1084)
Q Consensus 386 ~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~ 465 (1084)
|.+.+|..+.||+|++.||+|+-+|.++||+..+...+. ++.+|.+.|.++.|+|....+-++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 356799999999999999999999999999999985554 89999999999999998422379999999999999999
Q ss_pred CCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCC
Q 001403 466 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 545 (1084)
Q Consensus 466 ~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 545 (1084)
+..++..+.+|...|..++|+| +|++|+|++.|.+-++||+.+.......++|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 9999999999999999999976 6689999999999999999999999999999999999999999999999987
Q ss_pred CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec-
Q 001403 546 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK- 624 (1084)
Q Consensus 546 ~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~- 624 (1084)
|..-+|||+++|+++..+.+|. .+|.+++|+|+|..+++|+.|++++|||++....+.++..|.. .|..|.|+|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~ 398 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQ 398 (459)
T ss_pred cchhheeecccCcEEEEecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEeccc
Confidence 6678999999999999999998 9999999999999999999999999999999999999987766 589999999
Q ss_pred CCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcccc
Q 001403 625 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 704 (1084)
Q Consensus 625 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~ 704 (1084)
.|.+|++++.|++++||...+..++..+.+|.+.|.++.++ +++..+++++.|.++++
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis----------------------~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS----------------------PDSQAIATSSFDRTIKL 456 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec----------------------cCCceEEEeccCceeee
Confidence 78999999999999999999999999999999999999997 78889999999999999
Q ss_pred cc
Q 001403 705 EK 706 (1084)
Q Consensus 705 w~ 706 (1084)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 96
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=325.81 Aligned_cols=335 Identities=20% Similarity=0.305 Sum_probs=286.9
Q ss_pred CccceeeecccCCCCceEEEEcCCCc-eeeeecccccCccccccceEEEEEcCCc----c--ccceeee-ecC----CCC
Q 001403 322 FPKTVAQTLIEGSSSPMSMDFHPVQH-TLLLGLWDVNSGQKLFIRNFKVWDIGAC----S--MLFKTAL-VRD----PGV 389 (1084)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~-~las~~~d~~sg~~~~~~~v~iwd~~~~----~--~~~~~~~-~~~----h~~ 389 (1084)
+|+...+.+. |+.+|.+++|+|-.. .||+++.| -+.++|++... . ..++..+ +.+ ...
T Consensus 167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~---------s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nk 236 (524)
T KOG0273|consen 167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGD---------STARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNK 236 (524)
T ss_pred ccccceeecc-CCCceEEEecCchhhhhhhccCCc---------cceeeeeehhhccccchhhhhhhhhhhhcccCCccC
Confidence 5566666777 999999999999887 99998777 88899998641 1 1111110 111 246
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001403 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 469 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~ 469 (1084)
.|++++|+.+|..||+|+.||.++||+...+. +. ++..|.++|.++.|+.+|. +|++++.|+++.+||..+|..
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceE
Confidence 89999999999999999999999999988753 22 6889999999999999999 899999999999999999999
Q ss_pred eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeE
Q 001403 470 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 549 (1084)
Q Consensus 470 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 549 (1084)
.+.+.-|..+-..+.|-. + ..+++.+.||.|+++.+....+..++.+|.+.|.++.|.|.|.+|++++. |+++
T Consensus 311 ~q~f~~~s~~~lDVdW~~--~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tl 383 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQS--N-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTL 383 (524)
T ss_pred EEeeeeccCCccceEEec--C-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCee
Confidence 999999998866777742 2 47999999999999999999999999999999999999999999999986 7789
Q ss_pred EEecCCCceEeeeeeccccccCceEEEEEcCCC---------CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceE
Q 001403 550 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK---------DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 620 (1084)
Q Consensus 550 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 620 (1084)
.||+.........+..|. ..|..+.|+|.| ..+++++.|++|++||+..+.++..+..|.. +|+++
T Consensus 384 kiWs~~~~~~~~~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~--pVysv 458 (524)
T KOG0273|consen 384 KIWSMGQSNSVHDLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE--PVYSV 458 (524)
T ss_pred EeeecCCCcchhhhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC--ceEEE
Confidence 999999999999999988 899999999974 4789999999999999999999999976644 69999
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccC
Q 001403 621 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 700 (1084)
Q Consensus 621 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 700 (1084)
+|+|+|+++|+|+.||.|.+|+.++++.++...
T Consensus 459 afS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~----------------------------------------------- 491 (524)
T KOG0273|consen 459 AFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ----------------------------------------------- 491 (524)
T ss_pred EecCCCcEEEecCCCCeeEeccccchheeEeec-----------------------------------------------
Confidence 999999999999999999999999987776554
Q ss_pred ccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeec
Q 001403 701 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 755 (1084)
Q Consensus 701 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~ 755 (1084)
..+.|..+.|+.+|..+.++.+||.+++-|+
T Consensus 492 ------------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 492 ------------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ------------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 2245677888888888888888888887664
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=328.16 Aligned_cols=624 Identities=15% Similarity=0.163 Sum_probs=417.0
Q ss_pred eeeecccCCCCceEEEEcCCCc---eeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQH---TLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 402 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~---~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 402 (1084)
...+|.||...|+|+.|-|+.+ ++++|..| +.|++|.+... .......+.+|.. .+++++.....
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD---------~~v~lW~l~~~-~~~~i~~~~g~~~--~~~cv~a~~~~ 113 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSD---------GRVILWKLRDE-YLIKIYTIQGHCK--ECVCVVARSSV 113 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCC---------CcEEEEEEeeh-heEEEEeecCcce--eEEEEEeeeeE
Confidence 4567899999999999999998 88999888 99999999822 2222233556554 45555544334
Q ss_pred EEEEeCCCEEEEEEccCCcccc-ceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC--ceeeEeccCCCc
Q 001403 403 LGVAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG--SRTYSFEGHGAP 479 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g--~~~~~~~~h~~~ 479 (1084)
..+...|+++.+||.+..+... ....+.....--.|+++.++.+..+++.|+.+..|.++.-.++ +.+..+.||.+.
T Consensus 114 ~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DW 193 (764)
T KOG1063|consen 114 MTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDW 193 (764)
T ss_pred EEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchh
Confidence 4444789999999996554110 0111222222345777788666557778888888888875544 456788999999
Q ss_pred EEEEeecccCC-CcEEEEEecCCeEEEEECCCCC-----------------c----e----------EeecCCCCeEEEE
Q 001403 480 VYSLCPHAKEN-IHFIFSISVDGKIKAWLYDSLG-----------------A----R----------VDYDAPGLGCTRM 527 (1084)
Q Consensus 480 v~~~~~~~~~~-~~~l~s~s~dg~i~iwd~~~~~-----------------~----~----------~~~~~~~~~i~~~ 527 (1084)
|.+++|..... .-+|+++|.|..||+|.+.... . . ..+.+|...|.++
T Consensus 194 Irsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv 273 (764)
T KOG1063|consen 194 IRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSV 273 (764)
T ss_pred hhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEE
Confidence 99999975544 5688999999999999764322 0 0 0124788899999
Q ss_pred EEcCCCCEEEEEeeCCCCCeeEEEecCCCc--eEeeeeec--cccccCceEEEEEcCCCCEEEEEECCCcEEEEEC-CCC
Q 001403 528 AYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQG--LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM-NKV 602 (1084)
Q Consensus 528 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~ 602 (1084)
.|+|.+..|++++. |.++.+|...+. --+....- ............|+|+++.+++-+.-|..++|.. +..
T Consensus 274 ~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~ 349 (764)
T KOG1063|consen 274 WWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT 349 (764)
T ss_pred EEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc
Confidence 99999988988887 666999987654 22222221 1111245888999999999999999999999983 334
Q ss_pred eEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEe
Q 001403 603 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 682 (1084)
Q Consensus 603 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~ 682 (1084)
......-..++...|..++|+|.|++|++.+.|.+-|++-.-.. ...
T Consensus 350 ~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~-q~~-------------------------------- 396 (764)
T KOG1063|consen 350 FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR-QQE-------------------------------- 396 (764)
T ss_pred ceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccc-ccc--------------------------------
Confidence 44444445566778999999999999999999999998864411 100
Q ss_pred cCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCc
Q 001403 683 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTL 762 (1084)
Q Consensus 683 ~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~ 762 (1084)
|. .+.. +..|...+.++++-+....+++++....+++|+.+..-.
T Consensus 397 ----------------------wH----------EiaR-PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv-- 441 (764)
T KOG1063|consen 397 ----------------------WH----------EIAR-PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV-- 441 (764)
T ss_pred ----------------------ee----------eecc-cccccccceeeehccCCceeeecccceeeeeecCcHHHH--
Confidence 10 0000 123777788888888666688888888889988764311
Q ss_pred CcccceecCCeeecCCCCCccccc-cCcCCCCCCCccEEEecCCCCEE-EEEeCCe-------------EEEEEcC----
Q 001403 763 STEATTKVPPRLYQPRHGPQFMVN-DTTDSNSQEAVPCFALSKNDAYL-FSASGGV-------------ISLYIVM---- 823 (1084)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~s~dg~~l-~~~sdg~-------------i~vwd~~---- 823 (1084)
+......+.+.... .+ .....|..+-.|...-+. .+-+.+. ..+....
T Consensus 442 ----------~~l~~i~g~~~~~~~~~---p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Edq 508 (764)
T KOG1063|consen 442 ----------KSLMAICGKCFKGSDEL---PDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQ 508 (764)
T ss_pred ----------HHHHHHhCccccCchhc---ccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHH
Confidence 00000011000000 00 012233333333222111 0000010 0010000
Q ss_pred -----CceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCC-----eEEEEEcCCceeeeeecccccCEEEEEEcCCCCEE
Q 001403 824 -----TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNIL 893 (1084)
Q Consensus 824 -----~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg-----~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l 893 (1084)
....+..+.+|...|.+++.+| +++++|+++... .|++|+..+...+..+.+|+-.|+.++|||||++|
T Consensus 509 Lq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~L 587 (764)
T KOG1063|consen 509 LQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYL 587 (764)
T ss_pred HHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEE
Confidence 1123456778999999999999 999999998654 79999999998889999999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCc--ceeeE-eecCC
Q 001403 894 VSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL--TCLKQ-WFPIS 969 (1084)
Q Consensus 894 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~--~~~~~-~~~~h 969 (1084)
+++|.|+++.+|.......... .+.....|.. -|.++.|+||++++|+ +.|.+|++|..... +.+.. -...+
T Consensus 588 LsvsRDRt~sl~~~~~~~~~e~-~fa~~k~HtR---IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~ 663 (764)
T KOG1063|consen 588 LSVSRDRTVSLYEVQEDIKDEF-RFACLKAHTR---IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKF 663 (764)
T ss_pred EEeecCceEEeeeeecccchhh-hhccccccce---EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhcc
Confidence 9999999999999865432221 1233444543 6899999999999999 58999999999877 55544 33456
Q ss_pred CCCEEEEEEcc-C----CCEEEEEeCCCcEEEEEcCCCceeEE---ec-cccccCCCCcccceeeeEEEECCC-------
Q 001403 970 SVPISQATFSC-D----CRMVFTSFVDGTLSIHEASNLEVQCR---IL-STAYLRPTTSCLHVYPHAIAAHPL------- 1033 (1084)
Q Consensus 970 ~~~v~~l~fs~-d----g~~l~t~~~dg~i~vwd~~~~~~~~~---~~-~~~~~~~~~~~~~v~~~~~~~~p~------- 1033 (1084)
..+|+++++.| + +..+++|-+.|.|.+|....-..... +. ....-+...+.+.|. .+.|.|-
T Consensus 664 ~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~--rl~w~p~~~~~~~~ 741 (764)
T KOG1063|consen 664 SLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVN--RLLWRPTCSDDWVE 741 (764)
T ss_pred CCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhh--eeEecccccccccc
Confidence 89999999987 2 23788899999999999662111100 00 001111112344455 3456652
Q ss_pred --CCCEEEEEeCCCcEEEEcCC
Q 001403 1034 --KPTQFAVGLTNGEVYVIEPN 1053 (1084)
Q Consensus 1034 --d~~~l~~~~~dg~v~vw~~~ 1053 (1084)
....|++|++|..++++++.
T Consensus 742 ~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 742 DKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ccceeEEeeecccceeEEeecc
Confidence 12357999999999999874
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=324.42 Aligned_cols=478 Identities=17% Similarity=0.274 Sum_probs=360.3
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 407 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~ 407 (1084)
+++..|++.|.++.|+|...+++++.++ |.|.||+.++....... .-...+|.+..|-+.-+++++|+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~Lyn---------G~V~IWnyetqtmVksf---eV~~~PvRa~kfiaRknWiv~Gs 74 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYN---------GDVQIWNYETQTMVKSF---EVSEVPVRAAKFIARKNWIVTGS 74 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeec---------CeeEEEecccceeeeee---eecccchhhheeeeccceEEEec
Confidence 4566799999999999999999999888 99999999987666443 33567999999999999999999
Q ss_pred CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-ceeeEeccCCCcEEEEeec
Q 001403 408 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPH 486 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g-~~~~~~~~h~~~v~~~~~~ 486 (1084)
+|..|+||+.++++.+. .+.+|.+-|.+++.+|... +++|+|.|-+|++||.+.+ .+.++++||..-|.+++|.
T Consensus 75 DD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fn 149 (794)
T KOG0276|consen 75 DDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFN 149 (794)
T ss_pred CCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEec
Confidence 99999999999997666 8899999999999999988 8999999999999999865 7789999999999999999
Q ss_pred ccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCC--CEEEEEeeCCCCCeeEEEecCCCceEeeeee
Q 001403 487 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 564 (1084)
Q Consensus 487 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~--~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 564 (1084)
|. |.+.+++++.|++|++|.+.+..+.+++.+|...|.++.+-+-| .+|++++. +..+.+||.++..+++++.
T Consensus 150 Pk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~TLe 224 (794)
T KOG0276|consen 150 PK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQTLE 224 (794)
T ss_pred CC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHHHhh
Confidence 86 55799999999999999999999999999999999999998755 68888874 7789999999999999999
Q ss_pred ccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 565 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 565 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
||. ..|..+.|+|.-..+++|++||+++||+..+-++..++.... ..+.+++-.+.++.+++|.+.|.+.+ .+.
T Consensus 225 GHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v-~lg 298 (794)
T KOG0276|consen 225 GHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV-KLG 298 (794)
T ss_pred ccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE-Ecc
Confidence 999 899999999999999999999999999999998888887553 46899999998888999988887654 222
Q ss_pred CCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCcc
Q 001403 645 ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 724 (1084)
Q Consensus 645 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 724 (1084)
...+...+ . +.|+. +|...
T Consensus 299 reeP~vsM------------d----------------------~~gKI-----------iwa~~---------------- 317 (794)
T KOG0276|consen 299 REEPAVSM------------D----------------------SNGKI-----------IWAVH---------------- 317 (794)
T ss_pred CCCCceee------------c----------------------CCccE-----------EEEcC----------------
Confidence 22111111 0 11111 11110
Q ss_pred ccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCcc--ccccCcCCCCCCCccEEEe
Q 001403 725 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF--MVNDTTDSNSQEAVPCFAL 802 (1084)
Q Consensus 725 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~l~~ 802 (1084)
+.|..+-.- +.+.++ ++..|+.+ ...++. .-.-....++.
T Consensus 318 --~ei~~~~~k-------s~~~~~---------------------------ev~DgErL~LsvKeLg--s~eiyPq~L~h 359 (794)
T KOG0276|consen 318 --SEIQAVNLK-------SVGAQK---------------------------EVTDGERLPLSVKELG--SVEIYPQTLAH 359 (794)
T ss_pred --ceeeeeece-------eccCcc---------------------------cccCCccccchhhhcc--ccccchHHhcc
Confidence 111111100 000000 11112211 001110 01223346788
Q ss_pred cCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEE
Q 001403 803 SKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 882 (1084)
Q Consensus 803 s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~ 882 (1084)
||+|+++++++||.-.||..-..+. ...+......|++ |....|+-..++.|+++ ++.+..+.+...-.
T Consensus 360 sPNGrfV~VcgdGEyiIyTala~Rn-----K~fG~~~eFvw~~-dsne~avRes~~~vki~--knfke~ksi~~~~~--- 428 (794)
T KOG0276|consen 360 SPNGRFVVVCGDGEYIIYTALALRN-----KAFGSGLEFVWAA-DSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS--- 428 (794)
T ss_pred CCCCcEEEEecCccEEEEEeeehhh-----cccccceeEEEcC-CCCeEEEEecCCceEEE--ecceeccccccccc---
Confidence 9999999999999988887432211 1345667889999 77778888889999998 66666655542111
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEc
Q 001403 883 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 956 (1084)
Q Consensus 883 ~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~ 956 (1084)
+..--.|.+|...+ ++.+++||.++++... ..+- ....+.|+.+|.+++++.|...+++..
T Consensus 429 -~e~i~gg~Llg~~s-s~~~~fydW~~~~lVr-----rI~v------~~k~v~w~d~g~lVai~~d~Sfyil~~ 489 (794)
T KOG0276|consen 429 -AEGIFGGPLLGVRS-SDFLCFYDWESGELVR-----RIEV------TSKHVYWSDNGELVAIAGDDSFYILKF 489 (794)
T ss_pred -eeeecCCceEEEEe-CCeEEEEEcccceEEE-----EEee------ccceeEEecCCCEEEEEecCceeEEEe
Confidence 11122355666555 4559999999966433 3322 234799999999999988888666654
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=299.46 Aligned_cols=294 Identities=17% Similarity=0.245 Sum_probs=266.8
Q ss_pred eeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 405 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 405 (1084)
..++|+||.+.|.++.|++|+++|++++-| |.+.|||.-+..+... +.-....|..++|+|.|+++|+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqD---------GklIvWDs~TtnK~ha---ipl~s~WVMtCA~sPSg~~VAc 114 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQD---------GKLIVWDSFTTNKVHA---IPLPSSWVMTCAYSPSGNFVAC 114 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccC---------CeEEEEEcccccceeE---EecCceeEEEEEECCCCCeEEe
Confidence 448999999999999999999999999988 9999999977655543 3336789999999999999999
Q ss_pred EeCCCEEEEEEccCC--c-cccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEE
Q 001403 406 AYSKHIVQLYAYHGG--S-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~--~-~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~ 482 (1084)
|+-|+...||++.+. + ..+...++.+|.+.+.|+.|.+|+. |+|++.|.+..+||+++|+.+..|.+|.+.|.+
T Consensus 115 GGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~s 191 (343)
T KOG0286|consen 115 GGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMS 191 (343)
T ss_pred cCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecCCcccEEE
Confidence 999999999999865 2 2234447889999999999999876 899999999999999999999999999999999
Q ss_pred EeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee
Q 001403 483 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 483 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 562 (1084)
+.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|.+++|.|+|.-+++|+. +++.++||++..+.+..
T Consensus 192 lsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDlRaD~~~a~ 266 (343)
T KOG0286|consen 192 LSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDLRADQELAV 266 (343)
T ss_pred EecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEeecCCcEEee
Confidence 999775 7789999999999999999999999999999999999999999999999985 77899999999999988
Q ss_pred eeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEE
Q 001403 563 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 563 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
|.... ...+|++++|+..|++|++|..|.++.+||.-.++.+..+.+|.. .|.++..+|||.-+++|+.|..++||.
T Consensus 267 ys~~~-~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 267 YSHDS-IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eccCc-ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchhHheeecC
Confidence 87443 457899999999999999999999999999999999999997765 699999999999999999999999994
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=320.71 Aligned_cols=561 Identities=15% Similarity=0.184 Sum_probs=429.0
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 444 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d 444 (1084)
+++.+||.+.-...+.. ..+...|+|++=..+ +..+++.. .|.+|.. |+.++. .+..|.+.|.-+.- -
T Consensus 56 ksfqvYd~~kl~ll~vs---~~lp~~I~alas~~~--~vy~A~g~-~i~~~~r--gk~i~~--~~~~~~a~v~~l~~--f 123 (910)
T KOG1539|consen 56 KSFQVYDVNKLNLLFVS---KPLPDKITALASDKD--YVYVASGN-KIYAYAR--GKHIRH--TTLLHGAKVHLLLP--F 123 (910)
T ss_pred ceEEEEeccceEEEEec---CCCCCceEEEEecCc--eEEEecCc-EEEEEEc--cceEEE--EeccccceEEEEee--e
Confidence 89999999876655432 347789999886654 44444333 3666653 332222 45577777776553 4
Q ss_pred CCcEEEEEEeCCCcEEEEECCCC-cee----eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecC
Q 001403 445 CKQISVITCGDDKTIKVWDAVTG-SRT----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 519 (1084)
Q Consensus 445 ~~~l~l~s~~~d~~i~vwd~~~g-~~~----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 519 (1084)
|. .++++..++.+.||+..++ ..+ .-++...+.|+++. +|+---+.++.|+.+|.+.+|++++++..+++..
T Consensus 124 Ge--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~ 200 (910)
T KOG1539|consen 124 GE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQE 200 (910)
T ss_pred cc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecc
Confidence 66 6888899999999998774 221 11222333377764 4444446789999999999999999999999999
Q ss_pred CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEE-EECCCcEEEEE
Q 001403 520 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWD 598 (1084)
Q Consensus 520 ~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd 598 (1084)
....|+++.-+|-=..++.|.. +|.|.+++++.++.+..|+... +.|+.++|..||+.+++ |+..|.+-+||
T Consensus 201 ~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d~---g~VtslSFrtDG~p~las~~~~G~m~~wD 273 (910)
T KOG1539|consen 201 FFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQDW---GRVTSLSFRTDGNPLLASGRSNGDMAFWD 273 (910)
T ss_pred cccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEccc---cceeEEEeccCCCeeEEeccCCceEEEEE
Confidence 9999999999999999999876 7779999999999999999776 89999999999876655 66779999999
Q ss_pred CCCCeEEEEEc-CCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC----CeeeeccccccceeEEEEcCCCceeee
Q 001403 599 MNKVQLLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGA 673 (1084)
Q Consensus 599 ~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~~~~~p~~~~~~~ 673 (1084)
++..+.+..+. .| ...+....|.|....+++++.|+.+++|-..++ +.++...+|..+-.++.|-
T Consensus 274 Le~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy-------- 343 (910)
T KOG1539|consen 274 LEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFY-------- 343 (910)
T ss_pred cCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeee--------
Confidence 99988887765 33 335888999999999999999999988866543 5667777898888888776
Q ss_pred eccCceeEecCCCCCCCCccceecccCccccccceeecCccceee------------ccCCccccceEEEEEEecC----
Q 001403 674 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL------------LLPSKVKANKISRLTYNNG---- 737 (1084)
Q Consensus 674 ~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~------------~~~~~~~~~~i~~l~~s~~---- 737 (1084)
...|..+.+++.|++.+.+++......+.... .....-.-.+|..+++...
T Consensus 344 -------------~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~ 410 (910)
T KOG1539|consen 344 -------------GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKE 410 (910)
T ss_pred -------------ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhh
Confidence 35688899999999988887543211111100 0011112345666666543
Q ss_pred -CCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CC
Q 001403 738 -GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GG 815 (1084)
Q Consensus 738 -g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg 815 (1084)
.+.+.+.-.+...+.|++..... |. .+.++. .+ ......+++++.++.|.+.+.|. .|
T Consensus 411 W~Nv~~~h~~~~~~~tW~~~n~~~---G~-------~~L~~~--------~~--~~~~~~~~av~vs~CGNF~~IG~S~G 470 (910)
T KOG1539|consen 411 WDNVITAHKGKRSAYTWNFRNKTS---GR-------HVLDPK--------RF--KKDDINATAVCVSFCGNFVFIGYSKG 470 (910)
T ss_pred hcceeEEecCcceEEEEeccCccc---cc-------EEecCc--------cc--cccCcceEEEEEeccCceEEEeccCC
Confidence 23344444456777788765422 00 011111 01 01456789999999999999997 69
Q ss_pred eEEEEEcCCceeEEEE---cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCE
Q 001403 816 VISLYIVMTFKTILTI---MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI 892 (1084)
Q Consensus 816 ~i~vwd~~~~~~~~~~---~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~ 892 (1084)
.|.+|++++|-....+ ..|.++|+.++... -++.+++++.+|.+++||..+..++..+. -...++++..+....+
T Consensus 471 ~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l 548 (910)
T KOG1539|consen 471 TIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDL 548 (910)
T ss_pred eEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhh
Confidence 9999999999999888 57999999999988 78899999999999999999888777776 3456888999988999
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeecCCCC
Q 001403 893 LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSV 971 (1084)
Q Consensus 893 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~ 971 (1084)
+|.+..|-.|+++|+.+ .++++.+.||.. .|++++|||||++|++ +.|++|++||+.++.++..+.. ..
T Consensus 549 ~a~~~ddf~I~vvD~~t-----~kvvR~f~gh~n---ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v--d~ 618 (910)
T KOG1539|consen 549 LAIALDDFSIRVVDVVT-----RKVVREFWGHGN---RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV--DS 618 (910)
T ss_pred hhhhcCceeEEEEEchh-----hhhhHHhhcccc---ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec--CC
Confidence 99999999999999998 557888888887 9999999999999999 5899999999999999887654 67
Q ss_pred CEEEEEEccCCCEEEEEeCC-CcEEEEEcCCC
Q 001403 972 PISQATFSCDCRMVFTSFVD-GTLSIHEASNL 1002 (1084)
Q Consensus 972 ~v~~l~fs~dg~~l~t~~~d-g~i~vwd~~~~ 1002 (1084)
+++++.|||+|.+|||+..| .-|++|--.+.
T Consensus 619 ~~~sls~SPngD~LAT~Hvd~~gIylWsNksl 650 (910)
T KOG1539|consen 619 PCTSLSFSPNGDFLATVHVDQNGIYLWSNKSL 650 (910)
T ss_pred cceeeEECCCCCEEEEEEecCceEEEEEchhH
Confidence 99999999999999999998 66999975543
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=297.21 Aligned_cols=295 Identities=20% Similarity=0.298 Sum_probs=252.9
Q ss_pred eeeecccCCCCceEEEEcCCC-ceeeeecccccCccccccceEEEEEcCCccccc--eeeeecCCCCCeEEEEEcCCCCE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQ-HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLF--KTALVRDPGVSVNRVVWSPDGSL 402 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg-~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~--~~~~~~~h~~~V~~v~fspdg~~ 402 (1084)
...+|++|+++|+.++..+.+ ..+.+++.| +++.+|++......+ ....+.||+..|..++.++||++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrD---------k~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~ 77 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRD---------KTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNF 77 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccc---------eEEEEEEeccCccccCceeeeeeccceEecceEEccCCce
Confidence 346789999999999999985 667778877 999999997654333 22348899999999999999999
Q ss_pred EEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccC--CCcE
Q 001403 403 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH--GAPV 480 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h--~~~v 480 (1084)
.++++.|+++++||+.+|+..+ .|.+|...|.+++|++|.+ .+++|+.|++|++||.. |.+..++..+ .+.|
T Consensus 78 alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WV 151 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWV 151 (315)
T ss_pred EEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCCCcCcE
Confidence 9999999999999999996655 6889999999999999999 69999999999999965 4455555443 7899
Q ss_pred EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 481 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 481 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
.++.|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||..+++|+. ++.+.+||++.++.+
T Consensus 152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~~~k~l 227 (315)
T KOG0279|consen 152 SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLNEGKNL 227 (315)
T ss_pred EEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEccCCcee
Confidence 9999999987899999999999999999999999999999999999999999999999876 667999999999998
Q ss_pred eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCC-------CCCcceEEEecCCCEEEEEE
Q 001403 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPENPRICFNKNGTLLAVIA 633 (1084)
Q Consensus 561 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~ 633 (1084)
..+... ..|.+++|+|+.-.|+. ..+..|+|||+.++..+..+..... .+...+++|++||..|++|.
T Consensus 228 ysl~a~----~~v~sl~fspnrywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 228 YSLEAF----DIVNSLCFSPNRYWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred EeccCC----CeEeeEEecCCceeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 877654 58999999998655544 4456699999999988877654322 23356789999999999999
Q ss_pred CCCeEEEEEcC
Q 001403 634 NENRIKILETP 644 (1084)
Q Consensus 634 ~dg~i~iwd~~ 644 (1084)
.|+.|++|.+.
T Consensus 303 td~~irv~qv~ 313 (315)
T KOG0279|consen 303 TDNVIRVWQVA 313 (315)
T ss_pred cCCcEEEEEee
Confidence 99999999864
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-37 Score=291.78 Aligned_cols=288 Identities=15% Similarity=0.178 Sum_probs=266.0
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEE
Q 001403 382 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 461 (1084)
Q Consensus 382 ~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~v 461 (1084)
.+|+||.+.|.++.|++|+++|++++.||.+.|||.-|..... .+.-....|..++|+|.|+ ++++|+.|+...|
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSI 123 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEE
Confidence 4589999999999999999999999999999999998875443 4556678999999999999 8999999999999
Q ss_pred EECCCC------ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcC-CCC
Q 001403 462 WDAVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGR 534 (1084)
Q Consensus 462 wd~~~g------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~ 534 (1084)
|++.+. ...+.+.+|.+.+.++.|.. | ..|+|+|.|.+..+||+++++....+.+|.+.|.+++++| +++
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 999855 34577899999999999954 3 5899999999999999999999999999999999999999 999
Q ss_pred EEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCC
Q 001403 535 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 614 (1084)
Q Consensus 535 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 614 (1084)
.+++++. +...++||++.+.+++.|.+|. ..|++++|.|+|.-+++|++|++.++||++..+.+..+......
T Consensus 201 tFvSg~c----D~~aklWD~R~~~c~qtF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~ 273 (343)
T KOG0286|consen 201 TFVSGGC----DKSAKLWDVRSGQCVQTFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII 273 (343)
T ss_pred eEEeccc----ccceeeeeccCcceeEeecccc---cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc
Confidence 9999987 6669999999999999999999 99999999999999999999999999999999999999877777
Q ss_pred CCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccc
Q 001403 615 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 694 (1084)
Q Consensus 615 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 694 (1084)
..|++++||..|++|.+|..|..+.+||.-.++.+..+.+|..+|.++..+ |||.-++
T Consensus 274 ~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s----------------------~DG~av~ 331 (343)
T KOG0286|consen 274 CGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS----------------------PDGMAVA 331 (343)
T ss_pred CCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC----------------------CCCcEEE
Confidence 789999999999999999999999999999999999999999999999997 6788899
Q ss_pred eecccCcccccc
Q 001403 695 SVEAENKSEVEK 706 (1084)
Q Consensus 695 ~~~~d~~i~~w~ 706 (1084)
+|+.|.++|||.
T Consensus 332 TgSWDs~lriW~ 343 (343)
T KOG0286|consen 332 TGSWDSTLRIWA 343 (343)
T ss_pred ecchhHheeecC
Confidence 999999999994
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=315.34 Aligned_cols=584 Identities=16% Similarity=0.235 Sum_probs=405.3
Q ss_pred cccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 001403 330 LIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 409 (1084)
Q Consensus 330 l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d 409 (1084)
++..+..|..++|+|...++.++... |.|++||..-+....+ +.+|.++|..++|+|++.++++|++|
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHs---------G~IQlWDYRM~tli~r---FdeHdGpVRgv~FH~~qplFVSGGDD 72 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHS---------GVIQLWDYRMGTLIDR---FDEHDGPVRGVDFHPTQPLFVSGGDD 72 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecC---------ceeeeehhhhhhHHhh---hhccCCccceeeecCCCCeEEecCCc
Confidence 34556789999999999999998766 9999999987766544 67899999999999999999999999
Q ss_pred CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccC
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 489 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~ 489 (1084)
-.|+||+.++.+++. ++.||.+.|..+.|++.-. +++|+|.|.+|+||++.+++++..+.||...|.|..|+|.+
T Consensus 73 ykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE 147 (1202)
T KOG0292|consen 73 YKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE 147 (1202)
T ss_pred cEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc
Confidence 999999999987665 7889999999999999877 89999999999999999999999999999999999999876
Q ss_pred CCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccc
Q 001403 490 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569 (1084)
Q Consensus 490 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 569 (1084)
| .++++|.|.+||+||+...+....-.. ++.=...+..+ + .-++--...-....+.||.
T Consensus 148 D--lIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~---------~--~dLfg~~DaVVK~VLEGHD-- 206 (1202)
T KOG0292|consen 148 D--LIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQG---------N--SDLFGQTDAVVKHVLEGHD-- 206 (1202)
T ss_pred c--eEEEecccceEEEEeecchhccCCCCC------Cchhhhhcccc---------c--hhhcCCcCeeeeeeecccc--
Confidence 4 899999999999999975443322111 00000011110 0 1111111223456788888
Q ss_pred cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCee
Q 001403 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 649 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 649 (1084)
..|+.++|+|.-..+++|++|+.|++|.+..-+.-..-...++...|.++-|+|...++++.+.|++|+|||+...+.+
T Consensus 207 -RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v 285 (1202)
T KOG0292|consen 207 -RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV 285 (1202)
T ss_pred -cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccce
Confidence 8899999999999999999999999999976554444344456668999999999999999999999999999999999
Q ss_pred eeccccccceeEEEEcCCCceeeeeccCceeEecCCC-----CCCCCccceecccCccccccceeecCccceeeccCCcc
Q 001403 650 DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-----KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 724 (1084)
Q Consensus 650 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~-----s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 724 (1084)
++++...++.+.++..|.....+.|-..|.+.|.-+- .-+++.+...- |..|+-+|+.+........+..+..
T Consensus 286 ~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~- 363 (1202)
T KOG0292|consen 286 QTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGT- 363 (1202)
T ss_pred eeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeeccccccceeEeccCCCc-
Confidence 9999999999999999999999999999988884331 22344444433 7788888887755544444443321
Q ss_pred ccceEEEEEEecCCCeEEEeec--CCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEe
Q 001403 725 KANKISRLTYNNGGQAIFALAS--NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 802 (1084)
Q Consensus 725 ~~~~i~~l~~s~~g~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 802 (1084)
...++.++.++|....++.++. +|...++.+++....... . . .........++-.
T Consensus 364 ~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~------------~---~--------~~~k~tG~~a~fv 420 (1202)
T KOG0292|consen 364 LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSD------------G---K--------DVKKGTGEGALFV 420 (1202)
T ss_pred ccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCC------------c---h--------hhhcCCCCceEEE
Confidence 3456788999998777666643 466666665543210000 0 0 0001222233333
Q ss_pred cCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEE
Q 001403 803 SKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 882 (1084)
Q Consensus 803 s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~ 882 (1084)
..++-.+..-++..+.+-++.+ +..+.+... .....+-+.. .|.+|+. ....|.+||+...+.+..+. -..|.
T Consensus 421 arNrfavl~k~~~~v~ik~l~N-~vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~--~s~vk 493 (1202)
T KOG0292|consen 421 ARNRFAVLDKSNEQVVIKNLKN-KVTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK--VSKVK 493 (1202)
T ss_pred EecceEEEEecCcceEEecccc-hhhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe--cCcee
Confidence 3332222222234444444432 222222211 2333444544 5655543 34569999999888777766 46788
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcc--
Q 001403 883 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT-- 960 (1084)
Q Consensus 883 ~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~-- 960 (1084)
-+.||+|..++|.-+. .+|.|.+.+-. .+....... +|.+-+|..+|-+|.+..+.-= |-+.+|.
T Consensus 494 yvvws~dm~~vAll~K-h~i~i~~kkL~------l~~sihEti----riksgawde~gVfiYtT~nHik--Yal~~GD~G 560 (1202)
T KOG0292|consen 494 YVVWSNDMSRVALLSK-HTITIADKKLE------LLCSIHETI----RIKSGAWDEDGVFIYTTLNHIK--YALENGDSG 560 (1202)
T ss_pred EEEEcCccchhhhccc-ceEEEEecchh------heecchhee----EeeeceeccCceEEEEehhhhh--hhhccCCcc
Confidence 9999999998887765 56888886641 222222222 4778889888888777533211 1122222
Q ss_pred eeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 001403 961 CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1003 (1084)
Q Consensus 961 ~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~ 1003 (1084)
.++++ ..++.-.. -.|..+++-..|+.+++.+++.-+
T Consensus 561 IikTL----d~~iyitk--v~gn~V~cl~rd~~~~~~~IDptE 597 (1202)
T KOG0292|consen 561 IIKTL----DKPIYITK--VKGNKVFCLNRDGEIECLTIDPTE 597 (1202)
T ss_pred eEEec----ccceEEEE--eeCCEEEEEecCCCeEEEeechHH
Confidence 12221 12333222 247778888888888888877643
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=304.48 Aligned_cols=462 Identities=15% Similarity=0.208 Sum_probs=342.6
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEEC
Q 001403 385 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 464 (1084)
Q Consensus 385 ~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~ 464 (1084)
..++..|.+|.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+-.+ ++++|+.|..|+|++.
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFNY 84 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEec
Confidence 3488999999999999999999999999999999987776 6666778999999998877 8999999999999999
Q ss_pred CCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC-CceEeecCCCCeEEEEEEcC-CCCEEEEEeeC
Q 001403 465 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGTS 542 (1084)
Q Consensus 465 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~ 542 (1084)
.+++.++.|..|.+-|++++.+|.. .+++|+|.|-+|++||++.. .+..++++|.+-|..++|+| |.+.+++++-
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL- 161 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL- 161 (794)
T ss_pred ccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec-
Confidence 9999999999999999999998854 79999999999999999875 46778999999999999999 6678999887
Q ss_pred CCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCC--CCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceE
Q 001403 543 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 620 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 620 (1084)
+++|.+|.+.+..+..++.+|. ..|+++.+-+- ..++++|++|.+|+|||.++..+++++++|.+ .|..+
T Consensus 162 ---DrTVKVWslgs~~~nfTl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v 233 (794)
T KOG0276|consen 162 ---DRTVKVWSLGSPHPNFTLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFV 233 (794)
T ss_pred ---cccEEEEEcCCCCCceeeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEE
Confidence 6779999999999999999999 89999999764 47999999999999999999999999998766 69999
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccC
Q 001403 621 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 700 (1084)
Q Consensus 621 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 700 (1084)
+|+|.-..+++|+.||+++||+..+-+....+....++++|++..+.
T Consensus 234 ~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~--------------------------------- 280 (794)
T KOG0276|consen 234 FFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKG--------------------------------- 280 (794)
T ss_pred EecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCC---------------------------------
Confidence 99999999999999999999999887666666555555555555433
Q ss_pred ccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCC
Q 001403 701 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 780 (1084)
Q Consensus 701 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1084)
+..++.|..+|.+.+=
T Consensus 281 -------------------------------------~~~i~vG~Deg~i~v~--------------------------- 296 (794)
T KOG0276|consen 281 -------------------------------------DGKIAVGFDEGSVTVK--------------------------- 296 (794)
T ss_pred -------------------------------------CCeEEEeccCCcEEEE---------------------------
Confidence 3333333333333220
Q ss_pred CccccccCcCCCCCCCccEEEecCCCCEEEEEeC--CeEEEE------EcCCceeEE----EEcCCCCCeEEEEEcCCCC
Q 001403 781 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG--GVISLY------IVMTFKTIL----TIMPPSPTATSLAFNPHDN 848 (1084)
Q Consensus 781 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sd--g~i~vw------d~~~~~~~~----~~~~~~~~i~~l~~s~~d~ 848 (1084)
-......+..++.|+.+-+... -.+.+- ++..|+.+. .+-...-....++-+| +|
T Consensus 297 ------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-NG 363 (794)
T KOG0276|consen 297 ------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-NG 363 (794)
T ss_pred ------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-CC
Confidence 0001111222223322211110 000010 222222211 1111111234678899 89
Q ss_pred cEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCC
Q 001403 849 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 928 (1084)
Q Consensus 849 ~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 928 (1084)
+++++++ ||.-.||..-..+ ..+.+.-....|++|....|.--.++.|+++ +..+... .+..
T Consensus 364 rfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~k--si~~-------- 425 (794)
T KOG0276|consen 364 RFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHK--SIRP-------- 425 (794)
T ss_pred cEEEEec-CccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--ecceecc--cccc--------
Confidence 8887665 8888888632211 1245566778999998888888788889998 4322111 1111
Q ss_pred CCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001403 929 PSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH 997 (1084)
Q Consensus 929 ~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vw 997 (1084)
-..+.+--.|.+|.+.+++.+++||.++++.++.+.. ....+.|+.+|.+++.++.| +.++.
T Consensus 426 --~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v----~~k~v~w~d~g~lVai~~d~-Sfyil 487 (794)
T KOG0276|consen 426 --DMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV----TSKHVYWSDNGELVAIAGDD-SFYIL 487 (794)
T ss_pred --ccceeeecCCceEEEEeCCeEEEEEcccceEEEEEee----ccceeEEecCCCEEEEEecC-ceeEE
Confidence 0113333456777778899999999999999887542 45678999999998888765 34444
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=323.89 Aligned_cols=289 Identities=17% Similarity=0.306 Sum_probs=253.0
Q ss_pred cCCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC
Q 001403 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 398 (1084)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp 398 (1084)
...+|+-|..+...-...++|+.||+|+..||.|..| ..|++|.+...+..... +...
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~d---------S~i~~~Sl~p~kl~~lk-----~~~~-------- 420 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVD---------SSVRVWSLTPKKLKKLK-----DASD-------- 420 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcchhhccccc---------cEEEEEecchhhhcccc-----chhh--------
Confidence 5778899999999888899999999999999999888 99999999864322111 1111
Q ss_pred CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001403 399 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 478 (1084)
Q Consensus 399 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~ 478 (1084)
...+=+.+.|-.+.+-|-.++...+ ++.||.++|..+.|+|+.+ +|++++.|+++++|.+.+..++..++||..
T Consensus 421 -l~~~d~~sad~~~~~~D~~~~~~~~---~L~GH~GPVyg~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~ 494 (707)
T KOG0263|consen 421 -LSNIDTESADVDVDMLDDDSSGTSR---TLYGHSGPVYGCSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLA 494 (707)
T ss_pred -hccccccccchhhhhccccCCceeE---EeecCCCceeeeeeccccc--ceeeccCCcceeeeecccceeEEEecCCCc
Confidence 1122234444446666666554333 6889999999999999999 899999999999999999999999999999
Q ss_pred cEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCce
Q 001403 479 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 558 (1084)
Q Consensus 479 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~ 558 (1084)
||+.+.|+| .|.+++|+|.|++-++|..+...+...+.+|...+.|+.|+|+..++++|+. +.++++||+.+|.
T Consensus 495 PVwdV~F~P--~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~ 568 (707)
T KOG0263|consen 495 PVWDVQFAP--RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGN 568 (707)
T ss_pred ceeeEEecC--CceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCC----CceEEEEEcCCCc
Confidence 999999965 6799999999999999999999999999999999999999999999999986 7789999999999
Q ss_pred EeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeE
Q 001403 559 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 638 (1084)
Q Consensus 559 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 638 (1084)
.++.|.||. ++|.+++|+|+|++|++|++||.|.+||+.+++++..+..| ...|.++.|+.||..||+++.|++|
T Consensus 569 ~VRiF~GH~---~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV 643 (707)
T KOG0263|consen 569 SVRIFTGHK---GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSV 643 (707)
T ss_pred EEEEecCCC---CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeE
Confidence 999999998 99999999999999999999999999999999999999988 4469999999999999999999999
Q ss_pred EEEEcCCC
Q 001403 639 KILETPES 646 (1084)
Q Consensus 639 ~iwd~~~~ 646 (1084)
++||+..-
T Consensus 644 ~lWD~~~~ 651 (707)
T KOG0263|consen 644 RLWDLTKV 651 (707)
T ss_pred EEEEchhh
Confidence 99998754
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=281.07 Aligned_cols=295 Identities=16% Similarity=0.189 Sum_probs=245.9
Q ss_pred ccccceEEEEEEecCC-CeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEE
Q 001403 723 KVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 801 (1084)
Q Consensus 723 ~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 801 (1084)
.+|.+.|..++..+.+ ..++.++.|..+.+|++... |.+.|..... +. +|...|..++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~--~~--GHsH~v~dv~ 70 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR--LT--GHSHFVSDVV 70 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee--ee--ccceEecceE
Confidence 4599999999998874 55677788999999998754 2233332222 33 4899999999
Q ss_pred ecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc--cc
Q 001403 802 LSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG--HS 878 (1084)
Q Consensus 802 ~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~--h~ 878 (1084)
.++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |.+.+++|+.|.+|++|+.... +..++.. |.
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~ 148 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHR 148 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCc
Confidence 999999999998 89999999999999999999999999999999 8999999999999999998854 4444433 37
Q ss_pred cCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEE
Q 001403 879 KRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 955 (1084)
Q Consensus 879 ~~V~~l~~spd--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd 955 (1084)
+.|.|+.|+|+ ..+|+++|.|++|++||+.+ ....+.+.+|.. .++.+++||||.+.++ |.||.+.+||
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-----~~l~~~~~gh~~---~v~t~~vSpDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-----CQLRTTFIGHSG---YVNTVTVSPDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-----cchhhccccccc---cEEEEEECCCCCEEecCCCCceEEEEE
Confidence 89999999998 78999999999999999998 345556667665 8999999999999999 5899999999
Q ss_pred cCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCC
Q 001403 956 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1035 (1084)
Q Consensus 956 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~ 1035 (1084)
+..++.+.. .+|...|.+++|+|+.-.|+.+ .+..|+|||++++..+..+....--+ ......+.+++++|++ ||
T Consensus 221 L~~~k~lys--l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG 295 (315)
T KOG0279|consen 221 LNEGKNLYS--LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DG 295 (315)
T ss_pred ccCCceeEe--ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CC
Confidence 999998665 3578999999999987666554 67779999999998887766333222 2234567889999998 69
Q ss_pred CEEEEEeCCCcEEEEcCC
Q 001403 1036 TQFAVGLTNGEVYVIEPN 1053 (1084)
Q Consensus 1036 ~~l~~~~~dg~v~vw~~~ 1053 (1084)
..|.+|..||.|++|.+.
T Consensus 296 ~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cEEEeeecCCcEEEEEee
Confidence 999999999999999874
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=303.12 Aligned_cols=543 Identities=17% Similarity=0.195 Sum_probs=387.1
Q ss_pred EeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCC-CcEEEEEecCCeEEEEECCCCCceEeec
Q 001403 440 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN-IHFIFSISVDGKIKAWLYDSLGARVDYD 518 (1084)
Q Consensus 440 ~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 518 (1084)
.|.|.+ +++-|....|.+||..+......+.||..+|+|+.+-|..+ ..++++|+.||.|.+|.++.........
T Consensus 21 sw~~~~----~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~ 96 (764)
T KOG1063|consen 21 SWGPGG----LVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYT 96 (764)
T ss_pred cccccc----eEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEe
Confidence 454544 34444578899999888878899999999999999976543 1279999999999999998544433333
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCce--EeeeeeccccccCceEEEEEcCC-CCEE-EEEECCCcE
Q 001403 519 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTA-KDQI-LAAGDDHVI 594 (1084)
Q Consensus 519 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~~~v~~~~~s~~-~~~l-~~~~~dg~i 594 (1084)
.......++++...-..+.+.. .++.+.+||.+..+ +...+.-.. ...-..++++.|+ +.++ ++|+.+..|
T Consensus 97 ~~g~~~~~~cv~a~~~~~~~~~----ad~~v~vw~~~~~e~~~~~~~rf~~-k~~ipLcL~~~~~~~~~lla~Ggs~~~v 171 (764)
T KOG1063|consen 97 IQGHCKECVCVVARSSVMTCKA----ADGTVSVWDKQQDEVFLLAVLRFEI-KEAIPLCLAALKNNKTFLLACGGSKFVV 171 (764)
T ss_pred ecCcceeEEEEEeeeeEEEeec----cCceEEEeecCCCceeeehheehhh-hhHhhHHHhhhccCCcEEEEecCcceEE
Confidence 3334445555544333333322 27789999985555 222222111 0012234555563 3333 447788888
Q ss_pred EEEECCCCeEEEEEcCCCCCCCcceEEEecCC---CEEEEEECCCeEEEEEcCCCC------------------------
Q 001403 595 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNG---TLLAVIANENRIKILETPESN------------------------ 647 (1084)
Q Consensus 595 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~---~~l~~~~~dg~i~iwd~~~~~------------------------ 647 (1084)
.++.-...+........++...|.+++|...+ -+|++++.|..||||.+.-+.
T Consensus 172 ~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~ 251 (764)
T KOG1063|consen 172 DLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILE 251 (764)
T ss_pred EEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeee
Confidence 88876666555555555566689999998744 488999999999999875332
Q ss_pred ee-------eeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeecc
Q 001403 648 SV-------DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 720 (1084)
Q Consensus 648 ~~-------~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~ 720 (1084)
.+ ..+.+|.+.|.++.|. |.+..+++++.|.++.+|.............++
T Consensus 252 ~i~~~is~eall~GHeDWV~sv~W~----------------------p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRl 309 (764)
T KOG1063|consen 252 EIQYRISFEALLMGHEDWVYSVWWH----------------------PEGLDLLSASADKSMIIWKPDENTGIWVDVVRL 309 (764)
T ss_pred eEEEEEehhhhhcCcccceEEEEEc----------------------cchhhheecccCcceEEEecCCccceEEEEEEe
Confidence 01 1223777777777776 566778999999999999977554444444444
Q ss_pred CCc-cccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccE
Q 001403 721 PSK-VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 799 (1084)
Q Consensus 721 ~~~-~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 799 (1084)
-.. +.........|+|++..+++-+..|..++|.... ...|..... ..+|...|..
T Consensus 310 Ge~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d--------------~~~w~~~~~---------iSGH~~~V~d 366 (764)
T KOG1063|consen 310 GEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD--------------KTFWTQEPV---------ISGHVDGVKD 366 (764)
T ss_pred ecccccccceeeEEEcCCCCEEEEecccCcEEEEeccC--------------ccceeeccc---------ccccccccee
Confidence 432 2344578889999999999999999999997221 223433221 1269999999
Q ss_pred EEecCCCCEEEEEe-CCeEEEEEcC----CceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-------
Q 001403 800 FALSKNDAYLFSAS-GGVISLYIVM----TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS------- 867 (1084)
Q Consensus 800 l~~s~dg~~l~~~s-dg~i~vwd~~----~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~------- 867 (1084)
++|+|.|.+|.+.+ |-+-|+|-.- +.-.+..-+-|...++|++|-+ ....+++|.+...+|+|+...
T Consensus 367 v~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~ 445 (764)
T KOG1063|consen 367 VDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLM 445 (764)
T ss_pred eeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeecccceeeeeecCcHHHHHHHH
Confidence 99999999999998 8888887654 2233444556888999999998 577888888899999998641
Q ss_pred ---cee------------------------------------------------------------------eeeecccc
Q 001403 868 ---SEV------------------------------------------------------------------ISKLEGHS 878 (1084)
Q Consensus 868 ---~~~------------------------------------------------------------------~~~l~~h~ 878 (1084)
+.+ ++++.||.
T Consensus 446 ~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG 525 (764)
T KOG1063|consen 446 AICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHG 525 (764)
T ss_pred HHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCc
Confidence 000 45567899
Q ss_pred cCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEE
Q 001403 879 KRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLA 952 (1084)
Q Consensus 879 ~~V~~l~~spd~~~l~s~s~dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~ 952 (1084)
-.|.+++.+|+|+++||++... .|++|+..+.. ..+.+.+|.- .|+.++|||||++|++ +.|+++.
T Consensus 526 yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~-----~~~~L~~HsL---TVT~l~FSpdg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 526 YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWL-----QVQELEGHSL---TVTRLAFSPDGRYLLSVSRDRTVS 597 (764)
T ss_pred eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchh-----hhheecccce---EEEEEEECCCCcEEEEeecCceEE
Confidence 9999999999999999998653 59999999844 4445667766 8999999999999998 7999999
Q ss_pred EEEcCCcceee---EeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC--ceeEEeccccccCCCCcccceeeeE
Q 001403 953 IYEAEELTCLK---QWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL--EVQCRILSTAYLRPTTSCLHVYPHA 1027 (1084)
Q Consensus 953 vwd~~~~~~~~---~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~ 1027 (1084)
+|......... .....|+..|.+..|+||+.+++|+|.|.+|+||....+ +.+.++. .+. ++.+|.+
T Consensus 598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a---~~~---~~~aVTA-- 669 (764)
T KOG1063|consen 598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFA---CLK---FSLAVTA-- 669 (764)
T ss_pred eeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhc---hhc---cCCceee--
Confidence 99885443221 225679999999999999999999999999999999988 4444432 122 2455664
Q ss_pred EEECCCC----CCEEEEEeCCCcEEEEcCC
Q 001403 1028 IAAHPLK----PTQFAVGLTNGEVYVIEPN 1053 (1084)
Q Consensus 1028 ~~~~p~d----~~~l~~~~~dg~v~vw~~~ 1053 (1084)
+++.|-+ +..+++|-..|.|.+|...
T Consensus 670 v~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 670 VAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred EEeeccccccccceEEEEecccEEEEEecc
Confidence 4444432 3478999999999999976
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=272.00 Aligned_cols=291 Identities=16% Similarity=0.279 Sum_probs=248.1
Q ss_pred ceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccce
Q 001403 347 HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 426 (1084)
Q Consensus 347 ~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~ 426 (1084)
-+||++++| .+|++|...++..... +......|..+...||+++||+++... |++||+.++..- +.
T Consensus 11 viLvsA~YD---------hTIRfWqa~tG~C~rT---iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~-Pv 76 (311)
T KOG0315|consen 11 VILVSAGYD---------HTIRFWQALTGICSRT---IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPN-PV 76 (311)
T ss_pred eEEEeccCc---------ceeeeeehhcCeEEEE---EecCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCC-ce
Confidence 478999998 9999999998776554 333567899999999999999998765 999999998753 55
Q ss_pred eeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEE
Q 001403 427 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506 (1084)
Q Consensus 427 ~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iw 506 (1084)
.++.+|...|+++.|..||+ +++|||+||+++|||++...+.+.++ |..+|+++..+|.. .-|+++..+|.|++|
T Consensus 77 ~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~dqsg~irvW 151 (311)
T KOG0315|consen 77 ATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISGDQSGNIRVW 151 (311)
T ss_pred eEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEeecCCCcEEEE
Confidence 68999999999999999999 89999999999999999976666665 77999999997754 689999999999999
Q ss_pred ECCCCCceEeec-CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCce------EeeeeeccccccCceEEEEEc
Q 001403 507 LYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA------IKRTYQGLQLQHNSVSVVHFD 579 (1084)
Q Consensus 507 d~~~~~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~------~~~~~~~~~~~~~~v~~~~~s 579 (1084)
|+........+. .....+.++...|||.+++.+.. .|..++|++-++. ++..++.|. +.+..+.+|
T Consensus 152 Dl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~---~~il~C~lS 224 (311)
T KOG0315|consen 152 DLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHN---GHILRCLLS 224 (311)
T ss_pred EccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheeccc---ceEEEEEEC
Confidence 999876655443 34458999999999999999865 6779999987643 345566666 889999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCC-eEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccc
Q 001403 580 TAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN 658 (1084)
Q Consensus 580 ~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 658 (1084)
||+++|++++.|.+++||+.++. +....++++ ...+..++||.||++|++++.|+..++|++..++.+....+|...
T Consensus 225 Pd~k~lat~ssdktv~iwn~~~~~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 225 PDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKA 302 (311)
T ss_pred CCCcEEEeecCCceEEEEecCCceeeEEEeecC--CceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccc
Confidence 99999999999999999999988 444455544 346899999999999999999999999999999999999999888
Q ss_pred eeEEEEc
Q 001403 659 LRKLSVN 665 (1084)
Q Consensus 659 i~~~~~~ 665 (1084)
..|++..
T Consensus 303 ~vc~~ln 309 (311)
T KOG0315|consen 303 AVCVALN 309 (311)
T ss_pred cEEEEee
Confidence 8777664
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=283.65 Aligned_cols=339 Identities=18% Similarity=0.236 Sum_probs=286.8
Q ss_pred eeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEE
Q 001403 428 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 507 (1084)
Q Consensus 428 ~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd 507 (1084)
.+..|++.|.+++.+|+.+ +++||+.|....+|++.+|..+..+.+|.+.|+++.| +.+|.+|+||+.+|.|++|.
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~F--shdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSF--SHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEE--ccCceEEEecCCCccEEEEE
Confidence 6789999999999999777 8999999999999999999999999999999999999 45789999999999999999
Q ss_pred CCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEE
Q 001403 508 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 587 (1084)
Q Consensus 508 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 587 (1084)
..++.....+......+.-+.|+|.+..|++|+. ++.+.+|.+.++...+.+.||. .++++-.|.|+|+.+++
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~---~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHN---SPCTCGEFIPDGKRILT 207 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCC---CCcccccccCCCceEEE
Confidence 9999999988877788999999999999999986 6679999999988889999988 89999999999999999
Q ss_pred EECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCC
Q 001403 588 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 667 (1084)
Q Consensus 588 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~ 667 (1084)
+..||+|++||..+++++..+....+. ...++.++..+..++.|..++.+.+-+..+++.+....+
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~~-~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~------------- 273 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEGL-ELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG------------- 273 (399)
T ss_pred EecCceEEEEecCCCceeEEecccccC-cCCccccccccceeEeccCCccEEEEccccceEEEecCC-------------
Confidence 999999999999999999998755543 467889999999999999998888877665533321110
Q ss_pred CceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecC
Q 001403 668 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 747 (1084)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 747 (1084)
.+..+-....
T Consensus 274 ---------------------------------------------------------------------~~~~l~~~~e- 283 (399)
T KOG0296|consen 274 ---------------------------------------------------------------------TVPELKPSQE- 283 (399)
T ss_pred ---------------------------------------------------------------------CCccccccch-
Confidence 0000000000
Q ss_pred CceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCce
Q 001403 748 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK 826 (1084)
Q Consensus 748 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~ 826 (1084)
.....|..+.++..-.+.|+|+ ||+|.|||+.+.+
T Consensus 284 --------------------------------------------~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 284 --------------------------------------------ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred --------------------------------------------hhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 0122333444555556777887 8999999998877
Q ss_pred eEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001403 827 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906 (1084)
Q Consensus 827 ~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd 906 (1084)
....+. |...|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.||...|.+++++|+.++++|+|.|++.+|++
T Consensus 320 ~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 320 LRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred hheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 665555 788899999987 46899999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 001403 907 VD 908 (1084)
Q Consensus 907 ~~ 908 (1084)
+.
T Consensus 397 v~ 398 (399)
T KOG0296|consen 397 VP 398 (399)
T ss_pred cC
Confidence 75
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=278.57 Aligned_cols=534 Identities=12% Similarity=0.141 Sum_probs=381.0
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 407 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~ 407 (1084)
.-+.|+. .=..+-+-|.|..+.... ..+.+++++...+. .+.||+..|.|++.+||--.+|+|-
T Consensus 60 ygYRG~d-cR~Nly~lptgE~vyfvA-----------~V~Vl~n~ee~~Qr----~y~GH~ddikc~~vHPdri~vatGQ 123 (626)
T KOG2106|consen 60 YGYRGVD-CRNNLYLLPTGELVYFVA-----------AVGVLYNWEERSQR----HYLGHNDDIKCMAVHPDRIRVATGQ 123 (626)
T ss_pred Eeeccee-eeceeEEccCccEEEEec-----------cEEEEEeehhhhcc----cccCCCCceEEEeecCCceeeccCc
Confidence 3344443 223455667776655521 45566777543322 2678999999999999999999875
Q ss_pred CCC--------EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEE--EeCCCcEEEEECCCCceeeEeccCC
Q 001403 408 SKH--------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT--CGDDKTIKVWDAVTGSRTYSFEGHG 477 (1084)
Q Consensus 408 ~dg--------~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s--~~~d~~i~vwd~~~g~~~~~~~~h~ 477 (1084)
..| .|+|||..+-..+. .+......|.|++||+-....++.. -+.+..+.|||...+......+..+
T Consensus 124 ~ag~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sn 200 (626)
T KOG2106|consen 124 GAGTSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSN 200 (626)
T ss_pred ccccCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceecc
Confidence 444 49999977754343 5656667899999998543213333 3556789999999999888888888
Q ss_pred CcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEe---ecC-CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEec
Q 001403 478 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 553 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd 553 (1084)
..|....|+|... +++++ ...|.+.+|+++.+..... ++. ....|.+++|.++|..+-. |.++.|.||+
T Consensus 201 e~v~~a~FHPtd~-nliit-~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTg-----DS~G~i~Iw~ 273 (626)
T KOG2106|consen 201 EVVFLATFHPTDP-NLIIT-CGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITG-----DSGGNILIWS 273 (626)
T ss_pred ceEEEEEeccCCC-cEEEE-eCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEee-----cCCceEEEEe
Confidence 8899999988643 44444 5568999999887665332 222 2357999999999987643 3477899999
Q ss_pred CCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEE
Q 001403 554 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 633 (1084)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 633 (1084)
..+.+..+....|. +.|.+++...+|. |++|+.|+.|..|| ..-+.++..+.......+..++=... -+++|+
T Consensus 274 ~~~~~~~k~~~aH~---ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~--di~vGT 346 (626)
T KOG2106|consen 274 KGTNRISKQVHAHD---GGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKG--DILVGT 346 (626)
T ss_pred CCCceEEeEeeecC---CceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCC--cEEEee
Confidence 98887777666666 9999999999885 55599999999999 55566666666555555666553322 266666
Q ss_pred CCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCc
Q 001403 634 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS 713 (1084)
Q Consensus 634 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~ 713 (1084)
..+.|..=.+.++-.+.
T Consensus 347 trN~iL~Gt~~~~f~~~--------------------------------------------------------------- 363 (626)
T KOG2106|consen 347 TRNFILQGTLENGFTLT--------------------------------------------------------------- 363 (626)
T ss_pred ccceEEEeeecCCceEE---------------------------------------------------------------
Confidence 65554433332221110
Q ss_pred cceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCC
Q 001403 714 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 793 (1084)
Q Consensus 714 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1084)
..+|......++..|+...+++++.|+.+++|+ ..+ ..|... .
T Consensus 364 --------v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k-------------~~wt~~--------------~ 406 (626)
T KOG2106|consen 364 --------VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK-------------LEWTKI--------------I 406 (626)
T ss_pred --------EEecccceeeEEcCCChhheeeccCcceEEEcc--CCc-------------eeEEEE--------------e
Confidence 012566777888999999999999999999998 111 123211 3
Q ss_pred CCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce-ee
Q 001403 794 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VI 871 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~-~~ 871 (1084)
..+..|+.|+|.| .+|.|. .|...+.|.++...+..-.. ..++++++|+| +|.+||+|+.|+.|+||.+..+. ..
T Consensus 407 ~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y 483 (626)
T KOG2106|consen 407 EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKY 483 (626)
T ss_pred cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEE
Confidence 5678899999999 888887 79999999999555554444 88999999999 99999999999999999987643 33
Q ss_pred eee-cccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee---------ee---eecCCCCccCCCCceEEEEcc
Q 001403 872 SKL-EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC---------RS---LQTPDGVMTLAPSETHIQFHK 938 (1084)
Q Consensus 872 ~~l-~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~---------~~---~~~~~~~~~~~~~v~~~~~s~ 938 (1084)
... +.|..+|+.+.||+|+++|.+.+.|-.|..|.-........ .+ +...- ......+..++-|.
T Consensus 484 ~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g--~s~~t~i~a~~rs~ 561 (626)
T KOG2106|consen 484 SRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFG--GSDGTDINAVARSH 561 (626)
T ss_pred EEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEec--ccCCchHHHhhhhh
Confidence 222 22448999999999999999999999999994332211110 00 00000 11123577788888
Q ss_pred CCCEEEEE-eCCeEEEEEcCCcc--eeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001403 939 DQTRFLLV-HETHLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 999 (1084)
Q Consensus 939 dg~~la~~-~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~ 999 (1084)
+.+++|++ ..|+|++|...--. ....-..+|++.|++++|+.+..+|++.+.|.+|..|++
T Consensus 562 ~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 562 CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 99999998 55899999886332 233336689999999999999999999999999999986
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=266.33 Aligned_cols=295 Identities=17% Similarity=0.264 Sum_probs=252.7
Q ss_pred cEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCce--Eeeeeeccccc
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQ 569 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~ 569 (1084)
-+|++++.|.+||+|...++.+..++......|..+.+.||++.|++++ ...|++||+++++ ++.++.+|.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~-- 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHT-- 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccC--
Confidence 5899999999999999999999999999999999999999999999987 5569999999865 588899998
Q ss_pred cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCee
Q 001403 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 649 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 649 (1084)
..|.++.|..+|+++++|++||+++|||++...+.+.+... .+|+++..+|+...|+++..+|.|++||+.+..+.
T Consensus 84 -kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 84 -KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred -CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence 89999999999999999999999999999997666666543 46999999999999999999999999999876433
Q ss_pred eeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceE
Q 001403 650 DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 729 (1084)
Q Consensus 650 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i 729 (1084)
..+. |. ....|
T Consensus 160 ~~li-------------------------------------------------------------------Pe--~~~~i 170 (311)
T KOG0315|consen 160 HELI-------------------------------------------------------------------PE--DDTSI 170 (311)
T ss_pred cccC-------------------------------------------------------------------CC--CCcce
Confidence 3221 11 22468
Q ss_pred EEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEE
Q 001403 730 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL 809 (1084)
Q Consensus 730 ~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 809 (1084)
.+++..|||..++++...|...+|++........ +.+ +. +...|...+..+.+|||+++|
T Consensus 171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~-----------l~P-----~~----k~~ah~~~il~C~lSPd~k~l 230 (311)
T KOG0315|consen 171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE-----------LEP-----VH----KFQAHNGHILRCLLSPDVKYL 230 (311)
T ss_pred eeEEEcCCCcEEEEecCCccEEEEEccCCCcccc-----------ceE-----hh----heecccceEEEEEECCCCcEE
Confidence 8999999999999999999999999865321000 000 01 112489999999999999999
Q ss_pred EEEe-CCeEEEEEcCCc-eeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEc
Q 001403 810 FSAS-GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 887 (1084)
Q Consensus 810 ~~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s 887 (1084)
|+++ |.+++||+.++. +....+.+|...+...+||. |+++|++|+.|+.+++|++..++.+....||-....|++..
T Consensus 231 at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9998 899999999987 77778899999999999999 99999999999999999999999999999999888888764
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=286.68 Aligned_cols=293 Identities=22% Similarity=0.317 Sum_probs=267.8
Q ss_pred cceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
++..+.|.+|...|+.+-|+|+-..+|+++.| .+|++||..++.... -++||++.|..++|+..|++|
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d---------~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk~l 165 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASED---------ATIKVFDTETGELER---SLRGHTDSVFDISFDASGKYL 165 (406)
T ss_pred CCchhhhhccccceeeeeeccCceEEEEecCC---------ceEEEEEccchhhhh---hhhccccceeEEEEecCccEE
Confidence 46677889999999999999999999999888 999999999987732 389999999999999999999
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEE
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 483 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~ 483 (1084)
|+++.|-.+++||.++. .++...+.+|...|.+++|-|.|. ++++++.|.+|+.|++.+|.+++++.+|...|..+
T Consensus 166 ~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v 241 (406)
T KOG0295|consen 166 ATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMV 241 (406)
T ss_pred EecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCchHhEEEE
Confidence 99999999999999873 233447789999999999999998 89999999999999999999999999999999999
Q ss_pred eecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCC---------------CEEEEEeeCCCCCee
Q 001403 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---------------RRLFSCGTSKEGESF 548 (1084)
Q Consensus 484 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~---------------~~l~~~~~~~~~~~~ 548 (1084)
.. ..||.++++++.|.++++|-+.+.++...+..|..++.+++|.|.. +++.+++. |++
T Consensus 242 ~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr----Dkt 315 (406)
T KOG0295|consen 242 RV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR----DKT 315 (406)
T ss_pred Ee--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc----cce
Confidence 88 6688999999999999999999999999999999999999997742 35666654 778
Q ss_pred EEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCE
Q 001403 549 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 628 (1084)
Q Consensus 549 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 628 (1084)
|++||+.++.++.++.+|. ..|..++|+|.|++|+++.+|+++++||+.++++++.+..+.+ .+.++.|+.+..+
T Consensus 316 Ik~wdv~tg~cL~tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lDfh~~~p~ 390 (406)
T KOG0295|consen 316 IKIWDVSTGMCLFTLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLDFHKTAPY 390 (406)
T ss_pred EEEEeccCCeEEEEEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEecCCCCce
Confidence 9999999999999999999 9999999999999999999999999999999999999998877 4899999999999
Q ss_pred EEEEECCCeEEEEEc
Q 001403 629 LAVIANENRIKILET 643 (1084)
Q Consensus 629 l~~~~~dg~i~iwd~ 643 (1084)
+++|+-|.++++|.-
T Consensus 391 VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 391 VVTGSVDQTVKVWEC 405 (406)
T ss_pred EEeccccceeeeeec
Confidence 999999999999963
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=289.61 Aligned_cols=334 Identities=19% Similarity=0.318 Sum_probs=274.8
Q ss_pred CCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEccC--Ccc-----ccceeeeec----ccccEeEEEeecCCCcEEEEEEe
Q 001403 387 PGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHG--GSD-----ARQQLEIDA----HVGNVNDLAFSAPCKQISVITCG 454 (1084)
Q Consensus 387 h~~~V~~v~fspdg~-~las~~~dg~v~iwd~~~--~~~-----~~~~~~l~~----h~~~V~~l~~s~d~~~l~l~s~~ 454 (1084)
|+.+|.+.+|+|-.. .||+|+.|-+.++|++.. ... ++......+ ....|++++|+.+|. +||+|+
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~--~LatG~ 254 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT--LLATGS 254 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC--eEEEee
Confidence 999999999999666 999999999999999874 111 111111111 224799999999999 899999
Q ss_pred CCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCC
Q 001403 455 DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR 534 (1084)
Q Consensus 455 ~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~ 534 (1084)
.||.+++|+ .+|..+.++..|.+||.++.| +..|.+|++++.||++.+||..++.....+..+..+...+.|-.+..
T Consensus 255 ~~G~~riw~-~~G~l~~tl~~HkgPI~slKW--nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~ 331 (524)
T KOG0273|consen 255 EDGEARIWN-KDGNLISTLGQHKGPIFSLKW--NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE 331 (524)
T ss_pred cCcEEEEEe-cCchhhhhhhccCCceEEEEE--cCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCce
Confidence 999999999 788889999999999999999 56788999999999999999999998888888887767777866555
Q ss_pred EEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCC
Q 001403 535 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 614 (1084)
Q Consensus 535 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 614 (1084)
+++++. ++.|+++.+....++.++.+|. ++|.++.|+|.+..|++++.|++++||++........+..|..
T Consensus 332 -F~ts~t----d~~i~V~kv~~~~P~~t~~GH~---g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk- 402 (524)
T KOG0273|consen 332 -FATSST----DGCIHVCKVGEDRPVKTFIGHH---GEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK- 402 (524)
T ss_pred -EeecCC----CceEEEEEecCCCcceeeeccc---CceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhcc-
Confidence 444443 7779999999999999999988 9999999999999999999999999999876665555544432
Q ss_pred CCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccc
Q 001403 615 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 694 (1084)
Q Consensus 615 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 694 (1084)
.|..+.|+|+|
T Consensus 403 -ei~t~~wsp~g-------------------------------------------------------------------- 413 (524)
T KOG0273|consen 403 -EIYTIKWSPTG-------------------------------------------------------------------- 413 (524)
T ss_pred -ceeeEeecCCC--------------------------------------------------------------------
Confidence 34444444433
Q ss_pred eecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCee
Q 001403 695 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 774 (1084)
Q Consensus 695 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 774 (1084)
.. .
T Consensus 414 --------------------------------------------~v---------------------------------~ 416 (524)
T KOG0273|consen 414 --------------------------------------------PV---------------------------------T 416 (524)
T ss_pred --------------------------------------------Cc---------------------------------c
Confidence 20 0
Q ss_pred ecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEE
Q 001403 775 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 853 (1084)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~ 853 (1084)
|++ ..+..+++++ |++|++||+..+.++.+|..|..+|.+++||| +++++|+
T Consensus 417 ~n~--------------------------~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAs 469 (524)
T KOG0273|consen 417 SNP--------------------------NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLAS 469 (524)
T ss_pred CCC--------------------------cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEe
Confidence 000 0233445544 89999999999999999999999999999999 9999999
Q ss_pred EeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001403 854 GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 908 (1084)
Q Consensus 854 g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~ 908 (1084)
|+.||.|.+|+..+++.++.+.+. +.|..++|+.+|.+|..+-.|+.+++-|+.
T Consensus 470 Gs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 470 GSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999999999998854 559999999999999999999999998874
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=280.90 Aligned_cols=335 Identities=15% Similarity=0.180 Sum_probs=287.8
Q ss_pred cceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
..-+.++..|+++|.+++.+|+.+++|+|.-| ..-.||+..++....+ +.||+..|+++.||.||.+|
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgD---------D~AflW~~~~ge~~~e---ltgHKDSVt~~~FshdgtlL 121 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGD---------DLAFLWDISTGEFAGE---LTGHKDSVTCCSFSHDGTLL 121 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCC---------ceEEEEEccCCcceeE---ecCCCCceEEEEEccCceEE
Confidence 34567889999999999999999999998766 7889999999986655 78999999999999999999
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEE
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 483 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~ 483 (1084)
|+|+.+|.|+||+..++.... .+...-+.+.-+.|+|-+. +|+.|+.||.+.+|.+.++...+.+.||..++++=
T Consensus 122 ATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G 196 (399)
T KOG0296|consen 122 ATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCG 196 (399)
T ss_pred EecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCCCCcccc
Confidence 999999999999999987554 4545566788899999888 89999999999999999988889999999999999
Q ss_pred eecccCCCcEEEEEecCCeEEEEECCCCCceEeecCC-CCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee
Q 001403 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 484 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 562 (1084)
.|.| +|+.++++..||+|++|++.+..+....... .....++.++..+..++.|.. ++.+++-+..+|+.+..
T Consensus 197 ~f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~~sgKVv~~ 270 (399)
T KOG0296|consen 197 EFIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNNGSGKVVNC 270 (399)
T ss_pred cccC--CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC----CccEEEEccccceEEEe
Confidence 9955 6899999999999999999999988877643 346778999999999998875 56688888888888877
Q ss_pred eec--------cccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEEC
Q 001403 563 YQG--------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 634 (1084)
Q Consensus 563 ~~~--------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 634 (1084)
..+ +......|.++.++..-+..++|+-||+|.|||+....+.+...... .|..+.|-+ ..+|++++.
T Consensus 271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~---~V~~l~w~~-t~~l~t~c~ 346 (399)
T KOG0296|consen 271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHED---GVTKLKWLN-TDYLLTACA 346 (399)
T ss_pred cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCC---ceEEEEEcC-cchheeecc
Confidence 663 22112334555556666788999999999999999888877776544 389999998 789999999
Q ss_pred CCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccc
Q 001403 635 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 707 (1084)
Q Consensus 635 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~ 707 (1084)
+|.|+.||.+++++.....+|...|.+++++ |+.+++++++.|++.++|+.
T Consensus 347 ~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls----------------------~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 347 NGKVRQWDARTGQLKFTYTGHQMGILDFALS----------------------PQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred CceEEeeeccccceEEEEecCchheeEEEEc----------------------CCCcEEEEecCCCeEEEEec
Confidence 9999999999999999999999999999997 67888999999999988875
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-31 Score=279.63 Aligned_cols=573 Identities=12% Similarity=0.122 Sum_probs=399.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeeccc-ccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 388 ~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
..+|.++|||.+.+.||.+-.+|.|.||++..+-.... .+.++. ..|.+++|++.++ |++.+.+|.|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence 46899999999999999999999999999998754433 455554 5899999997665 88999999999999999
Q ss_pred CceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE--eecCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001403 467 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKE 544 (1084)
Q Consensus 467 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 544 (1084)
++.++.+....+.|++++.++.. ..++.|+.||.+..++...+.... .+....+++.+++|+|++..++.|+.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~--- 174 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI--- 174 (691)
T ss_pred CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc---
Confidence 99999999999999999997754 689999999977777766655544 34455679999999999999999986
Q ss_pred CCeeEEEecCCCceEeeeee----ccc-cccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcce
Q 001403 545 GESFLVEWNESEGAIKRTYQ----GLQ-LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 619 (1084)
Q Consensus 545 ~~~~i~~wd~~~~~~~~~~~----~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 619 (1084)
++.|++||..++..+.... +.. ....-|+++.|-.+ ..+++|..-|+|.+||...+.+++.+..+.. .|.+
T Consensus 175 -Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~ 250 (691)
T KOG2048|consen 175 -DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLA 250 (691)
T ss_pred -CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--ceeE
Confidence 7789999999988776221 111 01234777877755 5899999999999999999999999887755 5999
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceeccc
Q 001403 620 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 699 (1084)
Q Consensus 620 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 699 (1084)
++..+++.++++++.|+.|.-|...++..- . +..
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~--------w----------------------------------v~~---- 284 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSE--------W----------------------------------VIN---- 284 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccc--------e----------------------------------eee----
Confidence 999999999999999999888876654220 0 000
Q ss_pred CccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCC
Q 001403 700 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 779 (1084)
Q Consensus 700 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1084)
.....|...+.+++..++ .+++++.|.++.+-.....+ ..+-
T Consensus 285 --------------------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~--------------~~~h-- 326 (691)
T KOG2048|consen 285 --------------------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFK--------------NMDH-- 326 (691)
T ss_pred --------------------ccccCCcccceeeeeecc--eEEecceeeEEEEccccccC--------------chhh--
Confidence 011237778888888877 68888888887763321100 0000
Q ss_pred CCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCcee---------EEEEcCCCCCeEEEEEcCCCCcE
Q 001403 780 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNNV 850 (1084)
Q Consensus 780 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~~ 850 (1084)
.+.. ....-.-+...|..++++......+.+|.+.+... .+........|.+.+.|| +|++
T Consensus 327 ---~~~~------~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~ 396 (691)
T KOG2048|consen 327 ---RQKN------LFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNL 396 (691)
T ss_pred ---hccc------cccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCE
Confidence 0000 00011123445666666777788889998865521 122233456799999999 9999
Q ss_pred EEEEeCCCeEEEEEcCCceee-----eeecccccCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeeeeeeecCCCC
Q 001403 851 IAIGMDDSTILIYNARSSEVI-----SKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGV 924 (1084)
Q Consensus 851 la~g~~dg~i~iwd~~~~~~~-----~~l~~h~~~V~~l~~spd~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~ 924 (1084)
+|.+.- ..++||.+.....+ .......-....+.|+-|+..++.++ .+..+.+.++++...+....++.. +
T Consensus 397 Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~- 473 (691)
T KOG2048|consen 397 IAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-A- 473 (691)
T ss_pred EEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-c-
Confidence 998773 45788877652222 11122334577889999998888888 778888888888664443333332 1
Q ss_pred ccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCC
Q 001403 925 MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 925 ~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
.-+.|..+..||||++||+ +..+.|.+|++++++...... .-+..|+.++|+| +-..|+.+..|+.|.-+|++..
T Consensus 474 --~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~-rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~ 550 (691)
T KOG2048|consen 474 --KCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV-RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEAR 550 (691)
T ss_pred --CCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh-ccCcceeeeeccccccCcEEEEecCCeEEEEecchh
Confidence 1237999999999999999 689999999999887655432 2358999999995 5667888889999999999554
Q ss_pred ceeEEeccc-cccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCCCcccCCCCCcccCCCCCCccccc
Q 001403 1003 EVQCRILST-AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDR 1080 (1084)
Q Consensus 1003 ~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1080 (1084)
++-.....- ..++..+..-.-...-+.|+|.+ ...+...+.+-+.+.|+.- ..+++.+..-.....|+|+++
T Consensus 551 ~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n-~s~~~~~~a~w~~~id~~~-----~lp~~~~~~~~~~~kt~egn~ 623 (691)
T KOG2048|consen 551 NLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKN-SSRFIVYDAHWSCLIDFSL-----PLPSDEDGPLKALKKTREGNL 623 (691)
T ss_pred hhhhhhhccccccccChhhcCCCCceEEeCCCC-ccEEEEEcCcEEEEEecCC-----CCCchhhcccccCCcccccch
Confidence 432111100 01111111111112346788753 4444445556666766632 233344444446667777654
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=295.34 Aligned_cols=576 Identities=14% Similarity=0.183 Sum_probs=398.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEEC
Q 001403 385 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 464 (1084)
Q Consensus 385 ~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~ 464 (1084)
+..+..|..++|+|...+++++-..|.|++||..-+.++. .+..|.++|..++|+|++. +++|||.|..|+||+.
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEec
Confidence 3356789999999999999999999999999999998777 7889999999999999999 9999999999999999
Q ss_pred CCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001403 465 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 544 (1084)
Q Consensus 465 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 544 (1084)
.+.+++.++.||-+-|..+.|++. -.+++++|.|.+|+||++.+.+++..+++|.+-|.|..|.|....+++++-
T Consensus 81 k~rrclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL--- 155 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL--- 155 (1202)
T ss_pred ccceehhhhccccceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc---
Confidence 999999999999999999999764 479999999999999999999999999999999999999999999999987
Q ss_pred CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec
Q 001403 545 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 624 (1084)
Q Consensus 545 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 624 (1084)
+.+|++||+..-+....-.+.- ...+.... +..=+.|+.|- -..+.+++|. ..|+-++|+|
T Consensus 156 -DQTVRVWDisGLRkk~~~pg~~--e~~~~~~~----~~~dLfg~~Da----------VVK~VLEGHD--RGVNwaAfhp 216 (1202)
T KOG0292|consen 156 -DQTVRVWDISGLRKKNKAPGSL--EDQMRGQQ----GNSDLFGQTDA----------VVKHVLEGHD--RGVNWAAFHP 216 (1202)
T ss_pred -cceEEEEeecchhccCCCCCCc--hhhhhccc----cchhhcCCcCe----------eeeeeecccc--cccceEEecC
Confidence 6679999986533322211100 00111000 00001122221 2234455554 4699999999
Q ss_pred CCCEEEEEECCCeEEEEEcCCCC--eeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcc
Q 001403 625 NGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 702 (1084)
Q Consensus 625 ~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 702 (1084)
.-..+++|++|+.|++|.+...+ .+.+.++|...|.++-|+ |..+.+++.+.|+++
T Consensus 217 TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh----------------------p~q~lIlSnsEDksi 274 (1202)
T KOG0292|consen 217 TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH----------------------PHQDLILSNSEDKSI 274 (1202)
T ss_pred CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEec----------------------CccceeEecCCCccE
Confidence 99999999999999999998764 456789999999999997 567889999999999
Q ss_pred ccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCcc--CcCcc---cceecCCeeecC
Q 001403 703 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL--TLSTE---ATTKVPPRLYQP 777 (1084)
Q Consensus 703 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~--~~~~~---~~~~~~~~~~~~ 777 (1084)
++||+......++... ..++...++..|..+ +++++.|+-+.||.+..+.. -..+. ......++.+|.
T Consensus 275 rVwDm~kRt~v~tfrr------endRFW~laahP~lN-LfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~ 347 (1202)
T KOG0292|consen 275 RVWDMTKRTSVQTFRR------ENDRFWILAAHPELN-LFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDL 347 (1202)
T ss_pred EEEecccccceeeeec------cCCeEEEEEecCCcc-eeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeec
Confidence 9999987666655532 456788999999998 55556666677787764332 00110 111234666777
Q ss_pred CCCCccccccCcCCC-CCCCccEEEecCCCCEEEEEe---CCeEEEEEcCCceeEEEE-c--CCCCCeEEEEEcCCCCcE
Q 001403 778 RHGPQFMVNDTTDSN-SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTI-M--PPSPTATSLAFNPHDNNV 850 (1084)
Q Consensus 778 ~~~~~~~~~~~~~~~-~~~~v~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~~~~~~-~--~~~~~i~~l~~s~~d~~~ 850 (1084)
.+.+......++..+ ...++.++.++|....+..++ .+...++.+.....-..- . .......++-... +++
T Consensus 348 ~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvar--Nrf 425 (1202)
T KOG0292|consen 348 RTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVAR--NRF 425 (1202)
T ss_pred cccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEe--cce
Confidence 665544444443321 246788999999877666664 366666655432110000 0 0111222332222 223
Q ss_pred EEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCC
Q 001403 851 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 930 (1084)
Q Consensus 851 la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1084)
.+.--.+..+.+=++.+. ..+.+.-. ..+..+-+.-+|.+|+. ....|.++|++..+... .++. ..
T Consensus 426 avl~k~~~~v~ik~l~N~-vtkkl~~~-~~~~~IF~ag~g~lll~--~~~~v~lfdvQq~~~~~--si~~--------s~ 491 (1202)
T KOG0292|consen 426 AVLDKSNEQVVIKNLKNK-VTKKLLLP-ESTDDIFYAGTGNLLLR--SPDSVTLFDVQQKKKVG--SIKV--------SK 491 (1202)
T ss_pred EEEEecCcceEEecccch-hhhcccCc-ccccceeeccCccEEEE--cCCeEEEEEeecceEEE--EEec--------Cc
Confidence 222223445555555432 22233211 23455666667776665 34459999999854322 1221 15
Q ss_pred ceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc--eeEEe
Q 001403 931 ETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE--VQCRI 1008 (1084)
Q Consensus 931 v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~--~~~~~ 1008 (1084)
+..+.||+|..++|.-+..+|.|.+.+ .+.+.... ..-+|.+-+|..||-+|.+... .|+ |-+.+|. .++++
T Consensus 492 vkyvvws~dm~~vAll~Kh~i~i~~kk-L~l~~sih--Etiriksgawde~gVfiYtT~n--Hik-Yal~~GD~GIikTL 565 (1202)
T KOG0292|consen 492 VKYVVWSNDMSRVALLSKHTITIADKK-LELLCSIH--ETIRIKSGAWDEDGVFIYTTLN--HIK-YALENGDSGIIKTL 565 (1202)
T ss_pred eeEEEEcCccchhhhcccceEEEEecc-hhheecch--heeEeeeceeccCceEEEEehh--hhh-hhhccCCcceEEec
Confidence 789999999999999888899999864 33443322 1567888899999988888754 344 4444442 23333
Q ss_pred ccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 1009 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1009 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
. ..++.+.+. |+.+.+-..|+.+.+..+...+
T Consensus 566 d-----------~~iyitkv~-----gn~V~cl~rd~~~~~~~IDptE 597 (1202)
T KOG0292|consen 566 D-----------KPIYITKVK-----GNKVFCLNRDGEIECLTIDPTE 597 (1202)
T ss_pred c-----------cceEEEEee-----CCEEEEEecCCCeEEEeechHH
Confidence 3 225554443 7899999999999988876554
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=280.09 Aligned_cols=299 Identities=18% Similarity=0.260 Sum_probs=269.7
Q ss_pred CCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC
Q 001403 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 399 (1084)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd 399 (1084)
+-.|..+.+.+.+|.+.|.|+++-|-..++|+|+.| ++++|||+.++..... +.||-..|..+++|+-
T Consensus 137 WHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~D---------rtikIwDlatg~Lklt---ltGhi~~vr~vavS~r 204 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSAD---------RTIKIWDLATGQLKLT---LTGHIETVRGVAVSKR 204 (460)
T ss_pred ccCcceehhhhhhccceEEEEeeCCCceeEEecCCC---------ceeEEEEcccCeEEEe---ecchhheeeeeeeccc
Confidence 556778899999999999999999999999999988 9999999999887765 8899999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCc
Q 001403 400 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 479 (1084)
Q Consensus 400 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~ 479 (1084)
-.||.+++.|+.|+-||++..+.++ .+.||-..|.|++..|.-+ .|++|+.|.+++|||+++...+..+.||..+
T Consensus 205 HpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~GH~~~ 279 (460)
T KOG0285|consen 205 HPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSGHTNP 279 (460)
T ss_pred CceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecCCCCc
Confidence 9999999999999999999998888 6779999999999999988 8999999999999999999999999999999
Q ss_pred EEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE
Q 001403 480 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 559 (1084)
Q Consensus 480 v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~ 559 (1084)
|.++.+.+. ...+++||.|++|++||+..++....+..|...+.+++.+|....+++++.+ .|..|++..|..
T Consensus 280 V~~V~~~~~--dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-----nik~w~~p~g~f 352 (460)
T KOG0285|consen 280 VASVMCQPT--DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-----NIKQWKLPEGEF 352 (460)
T ss_pred ceeEEeecC--CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-----cceeccCCccch
Confidence 999988553 3579999999999999999999999999999999999999999999998753 499999999999
Q ss_pred eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcC---CC---CCCCcceEEEecCCCEEEEEE
Q 001403 560 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA---GG---GLPENPRICFNKNGTLLAVIA 633 (1084)
Q Consensus 560 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~---~~~~v~~v~~s~~~~~l~~~~ 633 (1084)
+..+.+|. .-+.+++.+.|+ ++++|+++|.+.+||.++|-..+.... .+ ....|.+.+|...|..|+++.
T Consensus 353 ~~nlsgh~---~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~e 428 (460)
T KOG0285|consen 353 LQNLSGHN---AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGE 428 (460)
T ss_pred hhcccccc---ceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEecc
Confidence 99999988 889999998775 889999999999999999876655421 11 123478899999999999999
Q ss_pred CCCeEEEEEcCCC
Q 001403 634 NENRIKILETPES 646 (1084)
Q Consensus 634 ~dg~i~iwd~~~~ 646 (1084)
.|.+|++|.-...
T Consensus 429 adKtIk~~keDe~ 441 (460)
T KOG0285|consen 429 ADKTIKMYKEDEH 441 (460)
T ss_pred CCcceEEEecccc
Confidence 9999999976543
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=276.61 Aligned_cols=503 Identities=17% Similarity=0.215 Sum_probs=363.5
Q ss_pred ccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC--CC
Q 001403 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG 400 (1084)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp--dg 400 (1084)
....++...||++.|.|++.+||.-++|+|-.--.+|..+ ...++|||..+-.-+.. +..-...|.|++||+ .|
T Consensus 93 ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~-~phvriWdsv~L~TL~V---~g~f~~GV~~vaFsk~~~G 168 (626)
T KOG2106|consen 93 EERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPL-QPHVRIWDSVTLSTLHV---IGFFDRGVTCVAFSKINGG 168 (626)
T ss_pred hhhhcccccCCCCceEEEeecCCceeeccCcccccCCCcC-CCeeeecccccceeeee---eccccccceeeeecccCCC
Confidence 3456778889999999999999999999865443334433 37899999765444332 445667999999998 45
Q ss_pred CEEEEE--eCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE---ecc
Q 001403 401 SLLGVA--YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS---FEG 475 (1084)
Q Consensus 401 ~~las~--~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~---~~~ 475 (1084)
.+|+.. +.+..+.|||+..+.... ..+...+.|....|.|.+.. ++++++ .+.+.+|+++.+....+ ++.
T Consensus 169 ~~l~~vD~s~~h~lSVWdWqk~~~~~---~vk~sne~v~~a~FHPtd~n-liit~G-k~H~~Fw~~~~~~l~k~~~~fek 243 (626)
T KOG2106|consen 169 SLLCAVDDSNPHMLSVWDWQKKAKLG---PVKTSNEVVFLATFHPTDPN-LIITCG-KGHLYFWTLRGGSLVKRQGIFEK 243 (626)
T ss_pred ceEEEecCCCccccchhhchhhhccC---cceeccceEEEEEeccCCCc-EEEEeC-CceEEEEEccCCceEEEeecccc
Confidence 666665 445678999999886655 34456678999999999887 677777 68899999998876543 333
Q ss_pred C-CCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecC
Q 001403 476 H-GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 554 (1084)
Q Consensus 476 h-~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~ 554 (1084)
+ ...|.+++|.+++ -+++|..+|.|.||+............|.+.|.+++...+|.+|- ++. |..|..||
T Consensus 244 ~ekk~Vl~v~F~eng---dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgK----DRki~~Wd- 314 (626)
T KOG2106|consen 244 REKKFVLCVTFLENG---DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGK----DRKIILWD- 314 (626)
T ss_pred ccceEEEEEEEcCCC---CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCc----cceEEecc-
Confidence 3 3678999996544 389999999999999987776666568999999999999998876 654 67799999
Q ss_pred CCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEEC
Q 001403 555 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 634 (1084)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 634 (1084)
..-+.++..+... ..+.++.++=.. .-|++|...+.|..=.++++-.+..+ +|+. ....++.+|+.+.+++++.
T Consensus 315 ~~y~k~r~~elPe-~~G~iRtv~e~~--~di~vGTtrN~iL~Gt~~~~f~~~v~-gh~d--elwgla~hps~~q~~T~gq 388 (626)
T KOG2106|consen 315 DNYRKLRETELPE-QFGPIRTVAEGK--GDILVGTTRNFILQGTLENGFTLTVQ-GHGD--ELWGLATHPSKNQLLTCGQ 388 (626)
T ss_pred ccccccccccCch-hcCCeeEEecCC--CcEEEeeccceEEEeeecCCceEEEE-eccc--ceeeEEcCCChhheeeccC
Confidence 3333333333322 236777766433 33888877777766666665544443 2332 5789999999999999999
Q ss_pred CCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCcc
Q 001403 635 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE 714 (1084)
Q Consensus 635 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~ 714 (1084)
|+.+++|+ ..+.. --+.-..+..|+.|.|.+ .+++|... |...+.|.++.
T Consensus 389 dk~v~lW~--~~k~~-wt~~~~d~~~~~~fhpsg-~va~Gt~~----------------------G~w~V~d~e~~---- 438 (626)
T KOG2106|consen 389 DKHVRLWN--DHKLE-WTKIIEDPAECADFHPSG-VVAVGTAT----------------------GRWFVLDTETQ---- 438 (626)
T ss_pred cceEEEcc--CCcee-EEEEecCceeEeeccCcc-eEEEeecc----------------------ceEEEEecccc----
Confidence 99999999 33333 233445677888888776 55555443 33333333321
Q ss_pred ceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCC
Q 001403 715 CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 794 (1084)
Q Consensus 715 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1084)
..+.+.. ...++..+.|+|+|.+++.++.|+.|++|.+..+... ... . +.-+.
T Consensus 439 -~lv~~~~--d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~---------------------y~r-~--~k~~g 491 (626)
T KOG2106|consen 439 -DLVTIHT--DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRK---------------------YSR-V--GKCSG 491 (626)
T ss_pred -eeEEEEe--cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcE---------------------EEE-e--eeecC
Confidence 1111111 2678999999999999999999999999988654321 000 0 01144
Q ss_pred CCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEE-----------------E-cCCCCCeEEEEEcCCCCcEEEEEe
Q 001403 795 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT-----------------I-MPPSPTATSLAFNPHDNNVIAIGM 855 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~-----------------~-~~~~~~i~~l~~s~~d~~~la~g~ 855 (1084)
.+|+.+.||+|++++.+-+ |-.|-.|.....+.... + -.+...|..++-+. +.+++|+|.
T Consensus 492 s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~-~~~~lA~gd 570 (626)
T KOG2106|consen 492 SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH-CEKLLASGD 570 (626)
T ss_pred ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh-hhhhhhccc
Confidence 8899999999999999988 67788995432222111 1 12445667777787 889999999
Q ss_pred CCCeEEEEEcCCce---eeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001403 856 DDSTILIYNARSSE---VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 907 (1084)
Q Consensus 856 ~dg~i~iwd~~~~~---~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~ 907 (1084)
+.|+|++|...-.+ ...++.+|++.|++++|+.+...|++.+.|..|..|++
T Consensus 571 d~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 571 DFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 99999999887544 34677899999999999999999998889999999986
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=271.41 Aligned_cols=290 Identities=19% Similarity=0.243 Sum_probs=254.0
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 407 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~ 407 (1084)
-.|.+|+++|..+.|+|||.+||+|..| ..|.+|++.....-+-. +++|++.|..+.|.+|+..|++++
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~D---------r~I~LWnv~gdceN~~~--lkgHsgAVM~l~~~~d~s~i~S~g 109 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSD---------RAIVLWNVYGDCENFWV--LKGHSGAVMELHGMRDGSHILSCG 109 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCc---------ceEEEEeccccccceee--eccccceeEeeeeccCCCEEEEec
Confidence 3478999999999999999999999988 99999998654443332 779999999999999999999999
Q ss_pred CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecc
Q 001403 408 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 487 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~ 487 (1084)
.|.+|+.||+++|++++ .+++|..-|+.+.-+.-|.. ++.+++.|+++++||+++..+++++. ....++++.|
T Consensus 110 tDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f-- 182 (338)
T KOG0265|consen 110 TDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGF-- 182 (338)
T ss_pred CCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeEEEEEe--
Confidence 99999999999998777 67899999999996666665 78899999999999999999888875 4567899999
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC----ceEeeee
Q 001403 488 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE----GAIKRTY 563 (1084)
Q Consensus 488 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~----~~~~~~~ 563 (1084)
...+..+.+|+-|+.|++||++.......+.+|...|+.+..+++|.++.+-+. +..+++||.+- .+++..+
T Consensus 183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p~~R~v~if 258 (338)
T KOG0265|consen 183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAPSQRCVKIF 258 (338)
T ss_pred cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCCCCceEEEe
Confidence 556678999999999999999999999999999999999999999999999876 77899999874 4557788
Q ss_pred ecccc-ccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEE
Q 001403 564 QGLQL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 641 (1084)
Q Consensus 564 ~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 641 (1084)
.++.. .......++|+|+++.+-+|+.|..+++||......+..+.+|.+ .|+++.|+|...++.+++.|.+|.+=
T Consensus 259 ~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 259 QGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred ecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEeccCceeEee
Confidence 87751 113356779999999999999999999999999899999987755 69999999999999999999998763
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=263.38 Aligned_cols=291 Identities=22% Similarity=0.330 Sum_probs=240.5
Q ss_pred eeeecccCCCCceEEEEcCC-CceeeeecccccCccccccceEEEEEcCC-ccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 326 VAQTLIEGSSSPMSMDFHPV-QHTLLLGLWDVNSGQKLFIRNFKVWDIGA-CSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spd-g~~las~~~d~~sg~~~~~~~v~iwd~~~-~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
..+.+++|++.|+.++|+|- |..||+++-| +.|+||+... ........+-.+|+..|..++|+|.|++|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~D---------k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~L 76 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTD---------KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYL 76 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCC---------ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEE
Confidence 45789999999999999999 9999999877 9999999984 33333333456899999999999999999
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC---ceeeEeccCCCcE
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFEGHGAPV 480 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g---~~~~~~~~h~~~v 480 (1084)
|+++.|.++.||.-..++ +.....++||...|.|++||++|. +||+|+.|+.|-||.+..+ .++..++.|...|
T Consensus 77 a~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV 153 (312)
T KOG0645|consen 77 ASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV 153 (312)
T ss_pred EEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc
Confidence 999999999999987654 455668999999999999999999 8999999999999998754 4667889999999
Q ss_pred EEEeecccCCCcEEEEEecCCeEEEEECCCC---CceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc
Q 001403 481 YSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557 (1084)
Q Consensus 481 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~ 557 (1084)
..+.|+|..+ +|+++|.|.+|++|+-... ....++..+...+.+++|.+.|..|++++. ++++.||-..+
T Consensus 154 K~V~WHPt~d--lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~Iw~~~~- 226 (312)
T KOG0645|consen 154 KHVIWHPTED--LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVSIWRLYT- 226 (312)
T ss_pred cEEEEcCCcc--eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceEeeeecc-
Confidence 9999998764 9999999999999976632 346788888889999999999999999975 77799998552
Q ss_pred eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCe------EEEEEcCCCCCCCcceEEEecC-CCEEE
Q 001403 558 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNKN-GTLLA 630 (1084)
Q Consensus 558 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~~-~~~l~ 630 (1084)
.+.+. |...++.+.|. ...|++++.|+.|++|.-...- .+... .+.+...|+++.|+|. .++|+
T Consensus 227 ----~~~~~--~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~~~~~L~ 297 (312)
T KOG0645|consen 227 ----DLSGM--HSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPKVSNRLA 297 (312)
T ss_pred ----Ccchh--cccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcCCCCCcee
Confidence 12221 24788999998 5689999999999999765421 11111 1223347999999994 78999
Q ss_pred EEECCCeEEEEEcC
Q 001403 631 VIANENRIKILETP 644 (1084)
Q Consensus 631 ~~~~dg~i~iwd~~ 644 (1084)
++++||.+++|.+.
T Consensus 298 s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 298 SGGDDGIVNFWELE 311 (312)
T ss_pred ecCCCceEEEEEec
Confidence 99999999999864
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=284.73 Aligned_cols=294 Identities=16% Similarity=0.178 Sum_probs=253.5
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEE
Q 001403 382 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 461 (1084)
Q Consensus 382 ~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~v 461 (1084)
.++..|+++|+.+.||++|+|||+++.|.+..||++.....++..+++.+|..+|..+.||||.+ ++++|+.|..+.+
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~l 295 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSL 295 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheee
Confidence 35778999999999999999999999999999999987766777779999999999999999999 8999999999999
Q ss_pred EECCCCceeeEec-cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEe
Q 001403 462 WDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 540 (1084)
Q Consensus 462 wd~~~g~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 540 (1084)
||+.+|.+.+.+. +|...+.+++|.| ||..+++|+.|+.+..||++......--......|.+++.++||+++++..
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEe
Confidence 9999999887774 4578899999955 778999999999999999986442221122235799999999999999987
Q ss_pred eCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceE
Q 001403 541 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 620 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 620 (1084)
. +..|++++..+.........+ .+|++.++|.+++++++.-.+..+++||++....+..+.++.....+..-
T Consensus 374 ~----d~~i~l~~~e~~~dr~lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS 445 (519)
T KOG0293|consen 374 V----DKKIRLYNREARVDRGLISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS 445 (519)
T ss_pred c----ccceeeechhhhhhhcccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe
Confidence 6 566999998876665555444 48999999999999999999999999999988888888877655556666
Q ss_pred EEec-CCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceeccc
Q 001403 621 CFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 699 (1084)
Q Consensus 621 ~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 699 (1084)
||.- +..++++|+.|+.|+||+..+++++..+.||...+++++++|. +..++|++++|
T Consensus 446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~---------------------~p~m~ASasDD 504 (519)
T KOG0293|consen 446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA---------------------DPEMFASASDD 504 (519)
T ss_pred ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC---------------------CHHHhhccCCC
Confidence 7765 5589999999999999999999999999999999999999974 66779999999
Q ss_pred Cccccccce
Q 001403 700 NKSEVEKPL 708 (1084)
Q Consensus 700 ~~i~~w~~~ 708 (1084)
|+||||-..
T Consensus 505 gtIRIWg~~ 513 (519)
T KOG0293|consen 505 GTIRIWGPS 513 (519)
T ss_pred CeEEEecCC
Confidence 999999865
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=279.80 Aligned_cols=285 Identities=20% Similarity=0.285 Sum_probs=263.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
+.||..+|+.+-|.|+-..+++++.|++|++||..+|+..+ .++||...|..++|+..|+ ++++++.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence 67799999999999999999999999999999999998755 7899999999999999999 899999999999999
Q ss_pred CCC-CceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001403 464 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 464 ~~~-g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
.++ -++++.+.+|...|.+++|.|.+ .++++++.|.+|+.|+++++-+..++.+|...+..+..+.||..+++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~- 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN- 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence 887 57788899999999999997754 79999999999999999999999999999999999999999999999986
Q ss_pred CCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCC---------------CCEEEEEECCCcEEEEECCCCeEEEE
Q 001403 543 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---------------KDQILAAGDDHVIKIWDMNKVQLLTT 607 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~ 607 (1084)
+.++++|-..++++...+..|. .+|.+++|.|. +.++.+++.|++|++||+.+|.++.+
T Consensus 256 ---dqtl~vW~~~t~~~k~~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 256 ---DQTLRVWVVATKQCKAELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred ---CceEEEEEeccchhhhhhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 7779999999999999999998 89999999763 25889999999999999999999999
Q ss_pred EcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCC
Q 001403 608 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 687 (1084)
Q Consensus 608 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s 687 (1084)
+.+|.. .|..++|+|.|++|+++.+|+++++||+.+.+++..+..|..-++++.|..
T Consensus 330 L~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~--------------------- 386 (406)
T KOG0295|consen 330 LVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK--------------------- 386 (406)
T ss_pred Eecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC---------------------
Confidence 998766 699999999999999999999999999999999999999999999999873
Q ss_pred CCCCccceecccCcccccc
Q 001403 688 EDVKPEISVEAENKSEVEK 706 (1084)
Q Consensus 688 ~~~~~l~~~~~d~~i~~w~ 706 (1084)
+..++++|+-|.++++|.
T Consensus 387 -~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 387 -TAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred -CCceEEeccccceeeeee
Confidence 444789999999999986
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=268.18 Aligned_cols=277 Identities=18% Similarity=0.303 Sum_probs=241.6
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
.+.||++.|..+.|+|+|.+||+|+.|..|.+|++.... .-...+++|+++|+.+.|.+|+. .+++++.|++|+.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence 377899999999999999999999999999999976543 33347889999999999999999 89999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
|+++|++++++++|..-|+++... .-+..++.+++.||++++||++.......++ ....++++.|..++..+.+++-
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI- 194 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI- 194 (338)
T ss_pred ecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc-
Confidence 999999999999999999999743 2234678889999999999999776665553 3447899999999999999987
Q ss_pred CCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC----CeEEEEEcCCCCCC--C
Q 001403 543 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLP--E 616 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~--~ 616 (1084)
++.|.+||++.+.....+.||. ++|+.+..+|+|.++++-+.|.++++||++- .+++..+.++.+.- .
T Consensus 195 ---dn~ikvWd~r~~d~~~~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn 268 (338)
T KOG0265|consen 195 ---DNDIKVWDLRKNDGLYTLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN 268 (338)
T ss_pred ---cCceeeeccccCcceEEeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence 5559999999999999999999 9999999999999999999999999999874 34577777654432 2
Q ss_pred cceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceee
Q 001403 617 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 672 (1084)
Q Consensus 617 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~ 672 (1084)
...++|+|++..+.+|+.|..+++||......+..+.+|.+.|++++|.|..+.+.
T Consensus 269 lL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iil 324 (338)
T KOG0265|consen 269 LLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIIL 324 (338)
T ss_pred cceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEE
Confidence 45789999999999999999999999999999999999999999999997655543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=309.11 Aligned_cols=296 Identities=21% Similarity=0.344 Sum_probs=255.8
Q ss_pred eeecccC-CCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEE
Q 001403 327 AQTLIEG-SSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 405 (1084)
Q Consensus 327 ~~~l~~h-~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 405 (1084)
.+++.+| ...|.++.|||||++++++..| +.+++|+..+...... ..+.+|...|.+++|+|||+++++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~---------~~i~~~~~~~~~~~~~-~~l~~h~~~v~~~~fs~d~~~l~s 220 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSD---------GLIRIWKLEGIKSNLL-RELSGHTRGVSDVAFSPDGSYLLS 220 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCC---------CcEEEeecccccchhh-ccccccccceeeeEECCCCcEEEE
Confidence 5566555 7899999999999999999888 9999999966552112 225889999999999999999999
Q ss_pred EeCCCEEEEEEc-cCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEe
Q 001403 406 AYSKHIVQLYAY-HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 484 (1084)
Q Consensus 406 ~~~dg~v~iwd~-~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~ 484 (1084)
++.|++|+|||+ ..+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+|||+++++++..+.+|.+.|.+++
T Consensus 221 ~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~ 295 (456)
T KOG0266|consen 221 GSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLA 295 (456)
T ss_pred ecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEE
Confidence 999999999999 4444444 7889999999999999997 899999999999999999999999999999999999
Q ss_pred ecccCCCcEEEEEecCCeEEEEECCCCC--ceEeecCCCC--eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 485 PHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~--~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
| ++++.+|++++.||.|++||+.++. ....+..+.. .++++.|+|++.++++++. ++.+.+||+..+...
T Consensus 296 f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 296 F--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSGKSV 369 (456)
T ss_pred E--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCCcce
Confidence 9 5578899999999999999999988 3344444443 5999999999999999986 667999999999999
Q ss_pred eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEE--CCCeE
Q 001403 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA--NENRI 638 (1084)
Q Consensus 561 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--~dg~i 638 (1084)
..+.+|......+.+...++.+.++++|+.|+.|++||..++..+..+..+. ...+..+.++|..+++++++ .|+.+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d~~~ 448 (456)
T KOG0266|consen 370 GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGDGLI 448 (456)
T ss_pred eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCCceE
Confidence 9999998322245555667889999999999999999999999999998875 45688999999999999998 68999
Q ss_pred EEEEcC
Q 001403 639 KILETP 644 (1084)
Q Consensus 639 ~iwd~~ 644 (1084)
++|...
T Consensus 449 ~~w~~~ 454 (456)
T KOG0266|consen 449 RLWKYD 454 (456)
T ss_pred EEecCC
Confidence 999754
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=267.74 Aligned_cols=294 Identities=14% Similarity=0.229 Sum_probs=258.7
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
++.||.+.|.|+++.|-..++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. ++++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 478899999999999999999999999999999999997544 7889999999999999888 89999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
|++..+.++.+.||-..|.+++.+|.- ..|++|+.|.++++||+++......+.+|..+|..+.+.|-...+++|+.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 999999999999999999999998765 58999999999999999999999999999999999999999999999986
Q ss_pred CCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEE
Q 001403 543 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 622 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 622 (1084)
+++|++||+..|+....+..|. ..+.+++.+|....+++++.| .|+-|++..|..++.+.++.. .+++++.
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hk---ksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~--iintl~~ 368 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHK---KSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA--IINTLSV 368 (460)
T ss_pred ---CceEEEeeeccCceeEeeeccc---ceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc--eeeeeee
Confidence 7779999999999999998888 899999999999888888876 589999999999998876655 5888888
Q ss_pred ecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcc
Q 001403 623 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 702 (1084)
Q Consensus 623 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 702 (1084)
+.|+ ++++|+++|.+.+||.+++...+.......+ |+
T Consensus 369 nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqp-------------------------------------GS----- 405 (460)
T KOG0285|consen 369 NSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQP-------------------------------------GS----- 405 (460)
T ss_pred ccCc-eEEEcCCceEEEEEecCcCcccccccccccC-------------------------------------Cc-----
Confidence 8877 7889999999999999988655543210000 00
Q ss_pred ccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeecc
Q 001403 703 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 756 (1084)
Q Consensus 703 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~ 756 (1084)
......|.+.+|...|.+|+++..|.+|++|.-.
T Consensus 406 --------------------l~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 406 --------------------LESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred --------------------cccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 0134578889999999999999999999999743
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=281.03 Aligned_cols=282 Identities=20% Similarity=0.291 Sum_probs=248.0
Q ss_pred CCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEE
Q 001403 335 SSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL 414 (1084)
Q Consensus 335 ~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~i 414 (1084)
-.|..|.|.|+|++|++|+.. |.+.+|+..+..... ++..|...|.++.||++|.++++|+.+|.|++
T Consensus 97 c~V~~v~WtPeGRRLltgs~S---------GEFtLWNg~~fnFEt---ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQS---------GEFTLWNGTSFNFET---ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKY 164 (464)
T ss_pred cceeeEEEcCCCceeEeeccc---------ccEEEecCceeeHHH---HhhhhcccceeEEEccCCCEEEEcCCCceEEe
Confidence 389999999999999998765 899999986543332 36679999999999999999999999999999
Q ss_pred EEccCCccccceeeeec-ccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcE
Q 001403 415 YAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 493 (1084)
Q Consensus 415 wd~~~~~~~~~~~~l~~-h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~ 493 (1084)
|+..-.... .+.+ |...|++++|||+.. .+++++.||+|+|||....+.-..+.||.-.|.++.|+|.. .+
T Consensus 165 WqpnmnnVk----~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k--gL 236 (464)
T KOG0284|consen 165 WQPNMNNVK----IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK--GL 236 (464)
T ss_pred cccchhhhH----HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc--ce
Confidence 998765322 2334 558999999999888 79999999999999999998888899999999999998865 59
Q ss_pred EEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCce
Q 001403 494 IFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 573 (1084)
Q Consensus 494 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v 573 (1084)
++++|.|..|++||.+++.++..+..|...|..+.|++++++|++++. |..++++|+++.+.++.+++|. ..+
T Consensus 237 iasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~r~Hk---kdv 309 (464)
T KOG0284|consen 237 IASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTYRGHK---KDV 309 (464)
T ss_pred eEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHhhcch---hhh
Confidence 999999999999999999999999999999999999999999999986 6679999999999999999998 899
Q ss_pred EEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 574 SVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 574 ~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
.++.|+|-. ..|.+|+.||.|..|.+...+++..+.. .+...|.+++|+|-|.+|++|+.|.++++|.-.
T Consensus 310 ~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 310 TSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 999999975 4566699999999999986666655543 334469999999999999999999999999754
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-29 Score=264.02 Aligned_cols=503 Identities=15% Similarity=0.182 Sum_probs=351.2
Q ss_pred cccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce-eeEeccC-CCcEEEEeecccCCCcEEEEEecCCeEEEEEC
Q 001403 431 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGH-GAPVYSLCPHAKENIHFIFSISVDGKIKAWLY 508 (1084)
Q Consensus 431 ~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~-~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 508 (1084)
-...+|.++||+.+.+ .||.+-.||.|.+|++..+=. ...+.++ ...|.+++|. ++..|++.+.+|.|.-||+
T Consensus 23 ~~Ps~I~slA~s~kS~--~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~---e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSN--QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA---EGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred eeccceEEEEEeccCC--ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc---cCCeEEeecCCceEEEEec
Confidence 3456799999999999 688899999999999987643 3455555 4679999996 4468999999999999999
Q ss_pred CCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEE
Q 001403 509 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 588 (1084)
Q Consensus 509 ~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 588 (1084)
.+.+.+..+...++.|++++.+|.+..++.++. +|.+..++...++......-.. +.+.+.++.|+|++..+++|
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd----dGvl~~~s~~p~~I~~~r~l~r-q~sRvLslsw~~~~~~i~~G 172 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCD----DGVLYDFSIGPDKITYKRSLMR-QKSRVLSLSWNPTGTKIAGG 172 (691)
T ss_pred ccCceeEEecCCCcceeEEEeCCccceEEeecC----CceEEEEecCCceEEEEeeccc-ccceEEEEEecCCccEEEec
Confidence 999999999999999999999999999999875 5568888887776654433222 24789999999999999999
Q ss_pred ECCCcEEEEECCCCeEEEEEcC-----CC-CCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEE
Q 001403 589 GDDHVIKIWDMNKVQLLTTIDA-----GG-GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKL 662 (1084)
Q Consensus 589 ~~dg~i~iwd~~~~~~~~~~~~-----~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 662 (1084)
+.||.|++||..++..+..... .. ...-|.++.|-.++ .+++|...|+|.+||...+..++.+..
T Consensus 173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~-------- 243 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSC-------- 243 (691)
T ss_pred ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhh--------
Confidence 9999999999999988773321 11 11235566666544 788898899999999988877766654
Q ss_pred EEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEE
Q 001403 663 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF 742 (1084)
Q Consensus 663 ~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 742 (1084)
|...|.+++..+++.+++
T Consensus 244 --------------------------------------------------------------h~adVl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 244 --------------------------------------------------------------HDADVLALAVADNEDRVF 261 (691)
T ss_pred --------------------------------------------------------------hhcceeEEEEcCCCCeEE
Confidence 444566666667777777
Q ss_pred EeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEE
Q 001403 743 ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYI 821 (1084)
Q Consensus 743 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd 821 (1084)
+++.|+.+..|....... -|-... ....|...+.+++..++ .+++|+ |..+.+-.
T Consensus 262 saGvd~~ii~~~~~~~~~-------------~wv~~~---------~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 262 SAGVDPKIIQYSLTTNKS-------------EWVINS---------RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICS 317 (691)
T ss_pred EccCCCceEEEEecCCcc-------------ceeeec---------cccCCcccceeeeeecc--eEEecceeeEEEEcc
Confidence 777777777665443321 022111 11248889999999887 566665 66666654
Q ss_pred cCCceeEEEEcCCCCCeEE-EEEcCCCCcEEEEEeCCCeEEEEEcCCce---------eeeeecccccCEEEEEEcCCCC
Q 001403 822 VMTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDSTILIYNARSSE---------VISKLEGHSKRVTGLVFSDALN 891 (1084)
Q Consensus 822 ~~~~~~~~~~~~~~~~i~~-l~~s~~d~~~la~g~~dg~i~iwd~~~~~---------~~~~l~~h~~~V~~l~~spd~~ 891 (1084)
....+...........-.+ +...| .++|..--.+..+.+|.+.+.- +.+........|.+.+.||||+
T Consensus 318 s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~ 395 (691)
T KOG2048|consen 318 SREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGN 395 (691)
T ss_pred ccccCchhhhccccccccceeecCc--cceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCC
Confidence 4331111111100011111 22333 3455555557778888876641 1222222345699999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-E-eCCeEEEEEcCCcc--eeeEeec
Q 001403 892 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEELT--CLKQWFP 967 (1084)
Q Consensus 892 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~-~d~~i~vwd~~~~~--~~~~~~~ 967 (1084)
+++.+.- ..++||.+..........+....... -....+.|+-|+..++. + ....+.+.+..+.. .+.....
T Consensus 396 ~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~---~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~ 471 (691)
T KOG2048|consen 396 LIAISTV-SRTKIYRLQPDPNVKVINVDDVPLAL---LDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQS 471 (691)
T ss_pred EEEEeec-cceEEEEeccCcceeEEEeccchhhh---ccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhcccc
Confidence 9998754 44889988864322222222211111 25778899999887777 4 56678888776543 2222222
Q ss_pred -CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCc
Q 001403 968 -ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGE 1046 (1084)
Q Consensus 968 -~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~ 1046 (1084)
+-...|..++.|+||+||++.+.+|.|.+|++++++...-.. .+. ....+++|+|.+.+.|+++..+++
T Consensus 472 ~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~---rln-------~~vTa~~~~~~~~~~lvvats~nQ 541 (691)
T KOG2048|consen 472 QAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV---RLN-------IDVTAAAFSPFVRNRLVVATSNNQ 541 (691)
T ss_pred ccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh---ccC-------cceeeeeccccccCcEEEEecCCe
Confidence 236789999999999999999999999999999987763332 111 234567888767889999999999
Q ss_pred EEEEcCCC
Q 001403 1047 VYVIEPNE 1054 (1084)
Q Consensus 1047 v~vw~~~~ 1054 (1084)
|.-+|+..
T Consensus 542 v~efdi~~ 549 (691)
T KOG2048|consen 542 VFEFDIEA 549 (691)
T ss_pred EEEEecch
Confidence 99999933
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-32 Score=248.75 Aligned_cols=293 Identities=15% Similarity=0.209 Sum_probs=253.5
Q ss_pred CCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC
Q 001403 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 399 (1084)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd 399 (1084)
..+|....++|..|.+.|.++.|+-||+|.+++..| ++|++|+...+..... +.||..+|..++.+.|
T Consensus 3 ~e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsd---------rtvrLWNp~rg~likt---YsghG~EVlD~~~s~D 70 (307)
T KOG0316|consen 3 LELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSD---------RTVRLWNPLRGALIKT---YSGHGHEVLDAALSSD 70 (307)
T ss_pred ccCcchhceeecccccceEEEEEccCCCEEEEcCCC---------ceEEeecccccceeee---ecCCCceeeecccccc
Confidence 356777889999999999999999999999998877 9999999988776644 7899999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC--ceeeEeccCC
Q 001403 400 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG--SRTYSFEGHG 477 (1084)
Q Consensus 400 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g--~~~~~~~~h~ 477 (1084)
...+|+|+.|..|.+||+++|+.++ .+++|.+.|+.+.|+.+.. .+++|+.|.++++||-++. ++++.+....
T Consensus 71 nskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 71 NSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred ccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccchhhhhc
Confidence 9999999999999999999998877 7899999999999999998 8999999999999998754 6788898889
Q ss_pred CcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc
Q 001403 478 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~ 557 (1084)
+.|.++.+ .+..+++|+.||++|.||++.+..... .-+.+|++++|++|++..++++. ++++++.|-.+|
T Consensus 146 D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l~sD--y~g~pit~vs~s~d~nc~La~~l----~stlrLlDk~tG 215 (307)
T KOG0316|consen 146 DGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTLSSD--YFGHPITSVSFSKDGNCSLASSL----DSTLRLLDKETG 215 (307)
T ss_pred CceeEEEe----cccEEEeeccCCcEEEEEeecceeehh--hcCCcceeEEecCCCCEEEEeec----cceeeecccchh
Confidence 99999987 346899999999999999987655433 34568999999999999998886 777999999999
Q ss_pred eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCe
Q 001403 558 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 637 (1084)
Q Consensus 558 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 637 (1084)
+++..+.+|......+ .++++....++++|++||.|++||+.....+..+..++. ..+..++++|.-..++++.. +.
T Consensus 216 klL~sYkGhkn~eykl-dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~~A~~-~~ 292 (307)
T KOG0316|consen 216 KLLKSYKGHKNMEYKL-DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFITATG-HG 292 (307)
T ss_pred HHHHHhcccccceeee-eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccceeEecC-Cc
Confidence 9999999998444333 346777788999999999999999999999999887654 34789999998777777765 34
Q ss_pred EEEEE
Q 001403 638 IKILE 642 (1084)
Q Consensus 638 i~iwd 642 (1084)
+..|.
T Consensus 293 ~~~~~ 297 (307)
T KOG0316|consen 293 DLFWY 297 (307)
T ss_pred eecee
Confidence 55554
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=297.12 Aligned_cols=263 Identities=14% Similarity=0.198 Sum_probs=228.7
Q ss_pred cceEEEEEEecCCCeEEEeecCCceEEeeccCCccCc---------CcccceecCCeeecCCCCCccccccCcCCCCCCC
Q 001403 726 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTL---------STEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 796 (1084)
Q Consensus 726 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1084)
...+.+..|++|+..++.+..|..|++|.+...+..+ .....+.....+.|...+..... + .+|.++
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~--L--~GH~GP 453 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT--L--YGHSGP 453 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE--e--ecCCCc
Confidence 4568899999999999999999999999997533211 00111112234444444432222 2 259999
Q ss_pred ccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec
Q 001403 797 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 875 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~ 875 (1084)
|....|+|+.++|++++ |+++++|.+.+..++..+++|..+|..+.|+| .|-++|+++.|++.++|......+++.+.
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999999999999 79999999999999999999999999999999 89999999999999999999999999999
Q ss_pred ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEE
Q 001403 876 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIY 954 (1084)
Q Consensus 876 ~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vw 954 (1084)
||-+.|.|+.|+|+..|+++||.|.+|++||+.+|. .++.+.||.. +|++++|||+|++||+| .|+.|.+|
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-----~VRiF~GH~~---~V~al~~Sp~Gr~LaSg~ed~~I~iW 604 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-----SVRIFTGHKG---PVTALAFSPCGRYLASGDEDGLIKIW 604 (707)
T ss_pred ccccccceEEECCcccccccCCCCceEEEEEcCCCc-----EEEEecCCCC---ceEEEEEcCCCceEeecccCCcEEEE
Confidence 999999999999999999999999999999999966 5667788887 99999999999999995 88999999
Q ss_pred EcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001403 955 EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 955 d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
|+.+|+.+.+ +.+|.+.|.++.||.||..||+|+.|.+|++||+..-
T Consensus 605 Dl~~~~~v~~-l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 605 DLANGSLVKQ-LKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EcCCCcchhh-hhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999988 5589999999999999999999999999999998754
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=246.32 Aligned_cols=292 Identities=16% Similarity=0.236 Sum_probs=236.0
Q ss_pred cccceEEEEEEecC-CCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEe
Q 001403 724 VKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 802 (1084)
Q Consensus 724 ~~~~~i~~l~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 802 (1084)
+|.+++..++++|. |..|++++.|..|++|+...+.. |. .......+|...|++++|
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s--------------~~--------ck~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS--------------WT--------CKTVLDDGHKRSVRSVAW 69 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc--------------EE--------EEEeccccchheeeeeee
Confidence 47889999999999 88899999999999998653110 11 111111259999999999
Q ss_pred cCCCCEEEEEe-CCeEEEEEcC--CceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc---eeeeeecc
Q 001403 803 SKNDAYLFSAS-GGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEG 876 (1084)
Q Consensus 803 s~dg~~l~~~s-dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~---~~~~~l~~ 876 (1084)
+|.|++|++++ |.++.||.-. ..+++.++.+|..+|.+++|++ +|.+||+++.|++|-||.+..+ ++...+++
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 99999999999 9999999876 4578899999999999999999 9999999999999999999854 57788999
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEE
Q 001403 877 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 955 (1084)
Q Consensus 877 h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd 955 (1084)
|...|..+.|+|...+|+|+|.|.+|++|+-..+. ...+.+.+.+|.. .|.+++|.+.|..|++ +.|++++||.
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd--dW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD--DWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecCCC--CeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEeee
Confidence 99999999999999999999999999999987321 2557788888876 7999999999999998 5789999999
Q ss_pred cCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCC
Q 001403 956 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1035 (1084)
Q Consensus 956 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~ 1035 (1084)
..+ .+...|+.++..+.|. ...|++++.|+.|+++.-..+-..-.+... ....+.|+..|. ++.|.|...
T Consensus 224 ~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~-~~~~~aHe~dVN--sV~w~p~~~ 293 (312)
T KOG0645|consen 224 LYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLL-AKKEGAHEVDVN--SVQWNPKVS 293 (312)
T ss_pred ecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHH-Hhhhcccccccc--eEEEcCCCC
Confidence 652 2344578899999998 448999999999999987753221111111 112223455555 688999547
Q ss_pred CEEEEEeCCCcEEEEcCC
Q 001403 1036 TQFAVGLTNGEVYVIEPN 1053 (1084)
Q Consensus 1036 ~~l~~~~~dg~v~vw~~~ 1053 (1084)
+.|++|++||.|++|.+.
T Consensus 294 ~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 NRLASGGDDGIVNFWELE 311 (312)
T ss_pred CceeecCCCceEEEEEec
Confidence 899999999999999874
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=280.74 Aligned_cols=296 Identities=16% Similarity=0.252 Sum_probs=252.3
Q ss_pred CccceeeecccCCCCceEEEEcC-CCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCC
Q 001403 322 FPKTVAQTLIEGSSSPMSMDFHP-VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 400 (1084)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~sp-dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg 400 (1084)
+|...+.++.||+..|+++.|.| .+.+|++++.| +.|+||++-........ +.||..+|..++|+++|
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD---------~~vklW~vy~~~~~lrt--f~gH~k~Vrd~~~s~~g 270 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMD---------GLVKLWNVYDDRRCLRT--FKGHRKPVRDASFNNCG 270 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCC---------ceEEEEEEecCcceehh--hhcchhhhhhhhccccC
Confidence 58889999999999999999999 99999999888 99999999774444433 88999999999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001403 401 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 480 (1084)
Q Consensus 401 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v 480 (1084)
..+.+++.|+.|++||+++|+++.. +. ....++|+.|.||+.. .+++|+.|+.|+.||+++|+.++++..|-+.|
T Consensus 271 ~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i 345 (503)
T KOG0282|consen 271 TSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAI 345 (503)
T ss_pred CeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHHHHhhhhhe
Confidence 9999999999999999999987653 22 2346899999999955 78889999999999999999999999999999
Q ss_pred EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEe-ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC---
Q 001403 481 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--- 556 (1084)
Q Consensus 481 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~--- 556 (1084)
..+.|. ++|..+++.+.|+.+++|+.+..-.... .......+.++..+|++.++++-+. ++.|.++.+..
T Consensus 346 ~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 346 LDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAIFSTVPPFR 419 (503)
T ss_pred eeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEEEecccccc
Confidence 999995 4778999999999999999987665443 3334456788999999999998775 67788887553
Q ss_pred ceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec-CCCEEEEEECC
Q 001403 557 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANE 635 (1084)
Q Consensus 557 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~d 635 (1084)
......+.+|... +.-..+.|||||.+|++|+.||.+.+||.++-+++..+..+.. .+..+.|+| ....+|+++.+
T Consensus 420 ~nkkK~feGh~va-Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~Skvat~~w~ 496 (503)
T KOG0282|consen 420 LNKKKRFEGHSVA-GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPSKVATCGWD 496 (503)
T ss_pred cCHhhhhcceecc-CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcceeEecccC
Confidence 2334567777633 3456689999999999999999999999999999999988744 588999999 46689999999
Q ss_pred CeEEEEE
Q 001403 636 NRIKILE 642 (1084)
Q Consensus 636 g~i~iwd 642 (1084)
|.|++|+
T Consensus 497 G~Ikiwd 503 (503)
T KOG0282|consen 497 GLIKIWD 503 (503)
T ss_pred ceeEecC
Confidence 9999996
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=271.34 Aligned_cols=279 Identities=16% Similarity=0.224 Sum_probs=242.0
Q ss_pred CcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccce
Q 001403 616 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 695 (1084)
Q Consensus 616 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 695 (1084)
.|..|.|.|+|+.|++|+..|.+.+|+..+-.
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn------------------------------------------------ 129 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN------------------------------------------------ 129 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEEEecCceee------------------------------------------------
Confidence 58899999999999999999999999863210
Q ss_pred ecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeee
Q 001403 696 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 775 (1084)
Q Consensus 696 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 775 (1084)
+..-...|...|.++.++++|.+++++..+|.|++|+.+.+..
T Consensus 130 ----------------------FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV--------------- 172 (464)
T KOG0284|consen 130 ----------------------FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV--------------- 172 (464)
T ss_pred ----------------------HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh---------------
Confidence 0001123888999999999999999999999999997554321
Q ss_pred cCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEE
Q 001403 776 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG 854 (1084)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g 854 (1084)
..+ ...|...|++++|||+...+++++ ||+|+|||....+..+.+.+|.-.|.+++|+| ...+||+|
T Consensus 173 --------k~~---~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasg 240 (464)
T KOG0284|consen 173 --------KII---QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASG 240 (464)
T ss_pred --------HHh---hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEc
Confidence 110 113568999999999999999998 69999999999999999999999999999999 78899999
Q ss_pred eCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEE
Q 001403 855 MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 934 (1084)
Q Consensus 855 ~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 934 (1084)
+.|..|++||.++|+++.++.+|...|..+.|+|++++|+|+|.|..++++|+.+ .+-+....+|.. .++++
T Consensus 241 skDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-----mkEl~~~r~Hkk---dv~~~ 312 (464)
T KOG0284|consen 241 SKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-----MKELFTYRGHKK---DVTSL 312 (464)
T ss_pred cCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH-----hHHHHHhhcchh---hheee
Confidence 9999999999999999999999999999999999999999999999999999996 335666777776 89999
Q ss_pred EEccCCCEEEE--EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001403 935 QFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 999 (1084)
Q Consensus 935 ~~s~dg~~la~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~ 999 (1084)
+|+|-..-|++ |.||.|..|.+..-+.+..+..+|...|++++|.|=|..|++|+.|.++++|.-
T Consensus 313 ~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 313 TWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 99997665555 699999999999777788888899999999999999999999999999999964
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-30 Score=279.73 Aligned_cols=287 Identities=25% Similarity=0.396 Sum_probs=254.1
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 407 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~ 407 (1084)
+++.+|.+.|.+++|+|++++|+++..| +.+++|++.+..... .+.+|...+..+.|+|++++|++++
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~---------g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~ 70 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGD---------GTIKVWDLETGELLR---TLKGHTGPVRDVAASADGTYLASGS 70 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecC---------cEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCCEEEEEc
Confidence 5678999999999999999999998777 999999998765332 2567889999999999999999999
Q ss_pred CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecc
Q 001403 408 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 487 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~ 487 (1084)
.++.|.+||+.+++.+. .+..|...|.++.|+++++ ++++++.|+.|.+||+.+++....+..|...+.+++|++
T Consensus 71 ~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 145 (289)
T cd00200 71 SDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP 145 (289)
T ss_pred CCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC
Confidence 99999999999875544 6678998999999999987 788888899999999999999999999999999999966
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccc
Q 001403 488 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 567 (1084)
Q Consensus 488 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 567 (1084)
. +.++++++.||.|++||+...+....+..+...+.+++|+|+++.+++++. ++.+.+||+.+++.+..+..+.
T Consensus 146 ~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~~~~ 219 (289)
T cd00200 146 D--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTLRGHE 219 (289)
T ss_pred c--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecchhhcC
Confidence 4 578888888999999999988888888888889999999999999998875 6669999999998888887776
Q ss_pred cccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEE
Q 001403 568 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 568 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
..+.++.|+|++.++++++.||.|++||+.+++....+..+. ..+.+++|+|+++++++++.|+.+++|+
T Consensus 220 ---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 220 ---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC--CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 789999999998888888889999999999999888887543 3689999999999999999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-30 Score=294.46 Aligned_cols=290 Identities=21% Similarity=0.314 Sum_probs=253.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEEC-C
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA-V 465 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~-~ 465 (1084)
|...|.++.|||||+++++++.++.+++|++.+++. .....+.+|...|.+++|+||++ ++++++.|++|+|||+ .
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeeccC
Confidence 478999999999999999999999999999977762 22335689999999999999999 8999999999999999 5
Q ss_pred CCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCC
Q 001403 466 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 545 (1084)
Q Consensus 466 ~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 545 (1084)
.+..++++++|...|++++|++ +++++++|+.|++|++||+++++....+..|...|.+++|+++++.|++++.
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~---- 308 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY---- 308 (456)
T ss_pred CCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC----
Confidence 6689999999999999999965 5589999999999999999999999999999999999999999999999965
Q ss_pred CeeEEEecCCCce--EeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCC-CCcceEEE
Q 001403 546 ESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICF 622 (1084)
Q Consensus 546 ~~~i~~wd~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~ 622 (1084)
++.|++||+.++. +...+.++.... .+..+.|+|++.++++++.|+.+++||+..+.....+..+... ..+.+...
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~ 387 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL 387 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccc
Confidence 7789999999999 567787777333 6999999999999999999999999999999999988877653 13445556
Q ss_pred ecCCCEEEEEECCCeEEEEEcCCCCeeeecccc-ccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceec--cc
Q 001403 623 NKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--AE 699 (1084)
Q Consensus 623 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~d 699 (1084)
++.+.++++|+.|+.|.+|+..++..+..+.+| ...+..+.++| ...++++++ .|
T Consensus 388 ~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~----------------------~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 388 STGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP----------------------TENLIASSSFEGD 445 (456)
T ss_pred cCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC----------------------CcCeeeecCcCCC
Confidence 789999999999999999999999999999999 77777777764 455566666 67
Q ss_pred Cccccccce
Q 001403 700 NKSEVEKPL 708 (1084)
Q Consensus 700 ~~i~~w~~~ 708 (1084)
+.+++|...
T Consensus 446 ~~~~~w~~~ 454 (456)
T KOG0266|consen 446 GLIRLWKYD 454 (456)
T ss_pred ceEEEecCC
Confidence 888888754
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=261.23 Aligned_cols=277 Identities=21% Similarity=0.317 Sum_probs=232.9
Q ss_pred CCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEE
Q 001403 333 GSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 412 (1084)
Q Consensus 333 h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v 412 (1084)
..+.|.|+++ |...+++|+.| .+|+|||.++...... +.||++.|.|+.|. .+.|++|+.|.+|
T Consensus 196 ~skgVYClQY--DD~kiVSGlrD---------nTikiWD~n~~~c~~~---L~GHtGSVLCLqyd--~rviisGSSDsTv 259 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRD---------NTIKIWDKNSLECLKI---LTGHTGSVLCLQYD--ERVIVSGSSDSTV 259 (499)
T ss_pred cCCceEEEEe--cchhhhccccc---------CceEEeccccHHHHHh---hhcCCCcEEeeecc--ceEEEecCCCceE
Confidence 4568999988 55678999988 9999999987655443 88999999999996 5699999999999
Q ss_pred EEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce---eeEeccCCCcEEEEeecccC
Q 001403 413 QLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVYSLCPHAKE 489 (1084)
Q Consensus 413 ~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~---~~~~~~h~~~v~~~~~~~~~ 489 (1084)
+|||+++|+++. ++-+|...|..+.|+.. ++++++.|.+|.|||+.+... .+.+.||...|+.+.|
T Consensus 260 rvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf---- 328 (499)
T KOG0281|consen 260 RVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---- 328 (499)
T ss_pred EEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc----
Confidence 999999998887 67799999999999843 799999999999999987653 3567899999999988
Q ss_pred CCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccc
Q 001403 490 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569 (1084)
Q Consensus 490 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 569 (1084)
+.+++++++.|.+|++|+..+.+....+.+|...|.|+.+ .|+++++|+. +.+|++||+..|.+++.++||.
T Consensus 329 d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLRvLeGHE-- 400 (499)
T KOG0281|consen 329 DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLRVLEGHE-- 400 (499)
T ss_pred ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHHHHhchH--
Confidence 4479999999999999999999999999999999888775 5788888876 7789999999999999999999
Q ss_pred cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE-------cCCCCCCCcceEEEecCCCEEEEEECCCeEEEEE
Q 001403 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-------DAGGGLPENPRICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
.-|.++.|. .+.+++|+.||+|+|||+..+..-... ..-.+...|..+.| |...+++.+.|.+|.|||
T Consensus 401 -eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 401 -ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred -Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence 889999994 679999999999999999876432111 11122334666666 466789999999999999
Q ss_pred cCCCCee
Q 001403 643 TPESNSV 649 (1084)
Q Consensus 643 ~~~~~~~ 649 (1084)
..++.+-
T Consensus 476 Fl~~~~~ 482 (499)
T KOG0281|consen 476 FLNGPPS 482 (499)
T ss_pred cCCCCcc
Confidence 9877443
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=237.65 Aligned_cols=271 Identities=20% Similarity=0.304 Sum_probs=239.3
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
++..|.++|.++.|+-||+|.++++.|.+|++|+...|.+++ ++.+|...|..++.+.|+. -+++|+.|+.|.+|
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQVW 86 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEEE
Confidence 467799999999999999999999999999999999998777 7889999999999999998 69999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCC--ceEeecCCCCeEEEEEEcCCCCEEEEEe
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCG 540 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 540 (1084)
|+.+|+.++++.+|.+.|+.+.| +++...+++|+.|..+++||.++.. ++..+......|.++..+ +..+++++
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~f--NeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS 162 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRF--NEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS 162 (307)
T ss_pred EcccCeeeeecccccceeeEEEe--cCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence 99999999999999999999999 5567899999999999999998654 455666666678777764 56788877
Q ss_pred eCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceE
Q 001403 541 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 620 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 620 (1084)
. +++++.||++.|+....+-+ .+|++++|+++++..++++-|+++++.|-.+|++++.+.+|.....-..+
T Consensus 163 ~----DGtvRtydiR~G~l~sDy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 163 V----DGTVRTYDIRKGTLSSDYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred c----CCcEEEEEeecceeehhhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 6 77799999999998777766 45999999999999999999999999999999999999988776555567
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccc-eeEEEEcCCCcee
Q 001403 621 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPISTVT 671 (1084)
Q Consensus 621 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~p~~~~~ 671 (1084)
+++.....+++|+.||.+.+||+.....+..+..+... +..+.+.|....+
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f 285 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDF 285 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccce
Confidence 88888889999999999999999999999888888777 7788888765443
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=262.01 Aligned_cols=624 Identities=17% Similarity=0.181 Sum_probs=354.1
Q ss_pred cceeeecccCCCCceEEEEcC-CCceeeeecccccCccccccceEEEEEcCCc-cccc--eeeeecCCCCCeEEEEEcCC
Q 001403 324 KTVAQTLIEGSSSPMSMDFHP-VQHTLLLGLWDVNSGQKLFIRNFKVWDIGAC-SMLF--KTALVRDPGVSVNRVVWSPD 399 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~sp-dg~~las~~~d~~sg~~~~~~~v~iwd~~~~-~~~~--~~~~~~~h~~~V~~v~fspd 399 (1084)
...+..|.+|++.|+.+.||| +..+||+++.| ..|+||.+..+ .+.+ ....+.+..-.|.|+.|+|.
T Consensus 69 ~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D---------~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpT 139 (1012)
T KOG1445|consen 69 TRDIGILAAHGDQVTDLGFSPFADELLATCSRD---------EPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPT 139 (1012)
T ss_pred ccccceeecccceeeccCccccchhhhhcccCC---------CeeEEEecCCCcccccCCcceeecCCceEEEEeecccC
Confidence 345677899999999999999 66788999888 99999999732 2222 22234555668999999997
Q ss_pred CCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC-CCceeeEeccCCC
Q 001403 400 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEGHGA 478 (1084)
Q Consensus 400 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~-~g~~~~~~~~h~~ 478 (1084)
..-|...+..|+++|||+.+++.+. ++.+|.+.|.++.|+.||+ ++++.+.|+.|+|||.+ .++.++..++|.+
T Consensus 140 aDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H~~ 214 (1012)
T KOG1445|consen 140 ADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGHGG 214 (1012)
T ss_pred cCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCcccccccccc
Confidence 7767777788999999999986555 7889999999999999999 89999999999999987 5678888898876
Q ss_pred cE-EEEeecccCCCcEEEEEecC----CeEEEEECCCCCc-eEeecCC-CCeEEEEEEcCCCCEEEEEeeCCCCCeeEEE
Q 001403 479 PV-YSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA-RVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVE 551 (1084)
Q Consensus 479 ~v-~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~-~~~~~~~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~ 551 (1084)
.- ..+.| -++-..|++.+.+ ..|++||...... ...++.. ...|.---|.||.++|+.++ .|+..++.
T Consensus 215 ~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~l~~ 289 (1012)
T KOG1445|consen 215 MRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNKLFM 289 (1012)
T ss_pred chhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcceEEE
Confidence 42 23445 3343467766655 4589999876443 2333222 23566667899999998876 35777888
Q ss_pred ecCCCceEeee--eeccccccCceEEEEEcCCCCEEEEEEC---------------------------------------
Q 001403 552 WNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAAGD--------------------------------------- 590 (1084)
Q Consensus 552 wd~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~--------------------------------------- 590 (1084)
+.+...+.... +...- .......++-|....-+..++
T Consensus 290 lE~~d~qPyLs~v~~~tl--e~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~ 367 (1012)
T KOG1445|consen 290 LEMQDRQPYLSHVFELTL--EEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAE 367 (1012)
T ss_pred EEecCCCcchhhhhhhcc--hhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCc
Confidence 87765443110 10000 000011111111100000000
Q ss_pred CCc-EEEEECCCCeEEEEEcC------CCCCC----------------CcceEEEec--------------C-CCEEEEE
Q 001403 591 DHV-IKIWDMNKVQLLTTIDA------GGGLP----------------ENPRICFNK--------------N-GTLLAVI 632 (1084)
Q Consensus 591 dg~-i~iwd~~~~~~~~~~~~------~~~~~----------------~v~~v~~s~--------------~-~~~l~~~ 632 (1084)
-+. ---|=-.+.+.++.... |+..+ .|......| | ...-++.
T Consensus 368 p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~ 447 (1012)
T KOG1445|consen 368 PGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVP 447 (1012)
T ss_pred cCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcC
Confidence 000 00011111111111110 00000 000000000 0 0000000
Q ss_pred ECCCeEEEEEcC-----CC-----CeeeeccccccceeEEE------EcCCCcee--------eeeccCce-------eE
Q 001403 633 ANENRIKILETP-----ES-----NSVDAAGVLSDNLRKLS------VNPISTVT--------GAGIANGS-------VS 681 (1084)
Q Consensus 633 ~~dg~i~iwd~~-----~~-----~~~~~~~~~~~~i~~~~------~~p~~~~~--------~~~~~~~~-------~~ 681 (1084)
....++-.+.. .+ ......++....+..+. .-|....+ .++...+. ..
T Consensus 448 -~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~ 526 (1012)
T KOG1445|consen 448 -KKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVN 526 (1012)
T ss_pred -cchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcc
Confidence 00001110000 00 00000001111110000 00000000 00000000 00
Q ss_pred ecCCCCCCCCccceeccc------CccccccceeecCcc---------ceeeccCCccccceEEEEEEecCCCeEE--Ee
Q 001403 682 VNEDPKEDVKPEISVEAE------NKSEVEKPLFARPSE---------CQSLLLPSKVKANKISRLTYNNGGQAIF--AL 744 (1084)
Q Consensus 682 ~~~~~s~~~~~l~~~~~d------~~i~~w~~~~~~~~~---------~~~~~~~~~~~~~~i~~l~~s~~g~~l~--~~ 744 (1084)
+....+.......+.+-. |.+.-|.-..+.... .....+| +.-. .|..+.++++ ..
T Consensus 527 ~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~P-----gEsn--Gfcan~~rvAVPL~ 599 (1012)
T KOG1445|consen 527 FGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLP-----GESN--GFCANNKRVAVPLA 599 (1012)
T ss_pred cCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCC-----CccC--ceeeccceEEEEec
Confidence 000000000000000000 001001100000000 0000011 1111 1233334333 34
Q ss_pred ecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC-CCCEEEEEe-CCeEEEEEc
Q 001403 745 ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSAS-GGVISLYIV 822 (1084)
Q Consensus 745 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~~~s-dg~i~vwd~ 822 (1084)
+..|.|-||++......++|.... .-+...|+.+.|.| |.+.||++. ||.|++|.+
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~----------------------l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~ 657 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPG----------------------LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRL 657 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccc----------------------cccCceeeecccCCCChHHeeecccCceEEEEEe
Confidence 557899999988776655555432 12567789999998 667788877 699999999
Q ss_pred CCc-------eeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEE
Q 001403 823 MTF-------KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVS 895 (1084)
Q Consensus 823 ~~~-------~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s 895 (1084)
..+ +....+..|...|+++.|+|--..+|++++.|-+|++||+.+++....+.+|.+.|.+++|||||+++|+
T Consensus 658 ~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~At 737 (1012)
T KOG1445|consen 658 TANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIAT 737 (1012)
T ss_pred ccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceee
Confidence 754 3345677899999999999977789999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-E----eCCeEEEEEcCCcc--eeeEeecC
Q 001403 896 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V----HETHLAIYEAEELT--CLKQWFPI 968 (1084)
Q Consensus 896 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~----~d~~i~vwd~~~~~--~~~~~~~~ 968 (1084)
.+.||+|++|+-.+++. .+....+. ...+-..+.|.-||+++++ | ++..|.+||..+.. .+......
T Consensus 738 VcKDg~~rVy~Prs~e~----pv~Eg~gp--vgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD 811 (1012)
T KOG1445|consen 738 VCKDGTLRVYEPRSREQ----PVYEGKGP--VGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD 811 (1012)
T ss_pred eecCceEEEeCCCCCCC----ccccCCCC--ccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeec
Confidence 99999999999988652 22222222 2235568899999999988 5 44579999987543 22221110
Q ss_pred CCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCce
Q 001403 969 SSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEV 1004 (1084)
Q Consensus 969 h~~~v~~l~fs~dg-~~l~t~~~dg~i~vwd~~~~~~ 1004 (1084)
-.-.+.--.+.+|. .++++|-.|..|.+|.+-....
T Consensus 812 vaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 812 VAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred ccCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 01111111233444 4567888899999999776543
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=259.35 Aligned_cols=277 Identities=16% Similarity=0.254 Sum_probs=236.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
....|.|+.+. ...+++|..|++|+|||.++-++++ .+.||++.|.|+.|. .+ ++++|+.|.+|+|||+++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 44689999885 6689999999999999999987776 788999999999995 45 899999999999999999
Q ss_pred CceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc---eEeecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 467 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 467 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
|+++.++-+|...|..+.|+ + .++++++.|.++.+||+.+... ...+.+|...|..+.|+. +++++++.
T Consensus 267 ge~l~tlihHceaVLhlrf~--n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASg-- 338 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFS--N--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASG-- 338 (499)
T ss_pred CchhhHHhhhcceeEEEEEe--C--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecC--
Confidence 99999999999999999993 2 5999999999999999987663 335678888899888864 58888875
Q ss_pred CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEe
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 623 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 623 (1084)
+.+|++|+..+++.++++.+|. ..|.|+.+ .++++++|+.|.+|++||+..|.++..+++|.. -|.++.|.
T Consensus 339 --DRTikvW~~st~efvRtl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd 409 (499)
T KOG0281|consen 339 --DRTIKVWSTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD 409 (499)
T ss_pred --CceEEEEeccceeeehhhhccc---ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec
Confidence 7789999999999999999999 77877766 578999999999999999999999999998866 48899986
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCC---------eeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccc
Q 001403 624 KNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 694 (1084)
Q Consensus 624 ~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 694 (1084)
.+.+++|..||+|++||+..+. ++..+..|.+.|..++|. ...++
T Consensus 410 --~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD------------------------~fqIv 463 (499)
T KOG0281|consen 410 --NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD------------------------EFQII 463 (499)
T ss_pred --CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec------------------------ceEEE
Confidence 6789999999999999998763 334455677777777664 56789
Q ss_pred eecccCccccccceeecCccc
Q 001403 695 SVEAENKSEVEKPLFARPSEC 715 (1084)
Q Consensus 695 ~~~~d~~i~~w~~~~~~~~~~ 715 (1084)
+++.|.+|.+||+..+.+...
T Consensus 464 sssHddtILiWdFl~~~~~~~ 484 (499)
T KOG0281|consen 464 SSSHDDTILIWDFLNGPPSAA 484 (499)
T ss_pred eccCCCeEEEEEcCCCCcccc
Confidence 999999999999876555433
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-29 Score=304.48 Aligned_cols=289 Identities=13% Similarity=0.180 Sum_probs=238.6
Q ss_pred cccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcc----c-cceeeeecCCCCCeEEEEEcC-CCCEE
Q 001403 330 LIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACS----M-LFKTALVRDPGVSVNRVVWSP-DGSLL 403 (1084)
Q Consensus 330 l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~----~-~~~~~~~~~h~~~V~~v~fsp-dg~~l 403 (1084)
+..|.+.|.+++|+|||++||+|+.| +.|+||+..... . ......+. +...|.+++|+| ++.+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D---------~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVN---------KKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQV 548 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCC---------CEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEE
Confidence 45689999999999999999999888 999999986421 0 01111122 346899999987 58899
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeec-CCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEE
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~-d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~ 482 (1084)
|+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..|.+
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 999999999999999886554 6789999999999997 667 8999999999999999999999888755 67888
Q ss_pred EeecccCCCcEEEEEecCCeEEEEECCCCC-ceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-----
Q 001403 483 LCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE----- 556 (1084)
Q Consensus 483 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~----- 556 (1084)
+.|.+ +++.++++|+.||.|++||++... ....+..|...|.++.|. ++..+++++. ++.|++||+..
T Consensus 623 v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 623 VQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSISGI 696 (793)
T ss_pred EEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCcccc
Confidence 88853 467899999999999999998765 455677888899999997 7888988875 67799999974
Q ss_pred -ceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcC-----------CCCCCCcceEEEec
Q 001403 557 -GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLPENPRICFNK 624 (1084)
Q Consensus 557 -~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~~s~ 624 (1084)
...+..+.+|. ..+..++|+|++.+|++|+.|+.|++|+......+..+.. ..+...|.+++|+|
T Consensus 697 ~~~~l~~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 697 NETPLHSFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred CCcceEEEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence 35677888887 7889999999999999999999999999876654433211 12223589999999
Q ss_pred CCCEEEEEECCCeEEEEEc
Q 001403 625 NGTLLAVIANENRIKILET 643 (1084)
Q Consensus 625 ~~~~l~~~~~dg~i~iwd~ 643 (1084)
++..|++++.+|.|+||++
T Consensus 774 ~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 774 QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCeEEEecCCCcEEEEec
Confidence 9999999999999999986
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=268.75 Aligned_cols=290 Identities=15% Similarity=0.193 Sum_probs=252.1
Q ss_pred eecCCCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEccC-CccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEE
Q 001403 383 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 460 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fsp-dg~~las~~~dg~v~iwd~~~-~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~ 460 (1084)
.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +.+++ ++.+|..+|.+++|+.+|. .++|++.|+.|+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence 4789999999999999 999999999999999999987 66666 7889999999999999999 799999999999
Q ss_pred EEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEe
Q 001403 461 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 540 (1084)
Q Consensus 461 vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 540 (1084)
+||+++|+++.++. ....++++.|+|++ .+.+++|+.|+.|+.||+++++...++..|-+.|..+.|-++|+++++.+
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 99999999999886 45567899998865 47999999999999999999999999999999999999999999999988
Q ss_pred eCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC---eEEEEEcCCCCCCCc
Q 001403 541 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV---QLLTTIDAGGGLPEN 617 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v 617 (1084)
. +..+++|+...+-.+.....+. .....++..+|+++++++-+.|+.|.++.+... ...+.+.+|.....-
T Consensus 362 D----dks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 362 D----DKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred c----CccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 5 5679999998877665554433 245778999999999999999999999986542 223445555444445
Q ss_pred ceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceec
Q 001403 618 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 697 (1084)
Q Consensus 618 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 697 (1084)
..+.|||||.+|++|+.||.+.+||..+.+.+..++.|.+.+..+.|.|.. ...+++++
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e---------------------~Skvat~~ 494 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE---------------------PSKVATCG 494 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC---------------------cceeEecc
Confidence 679999999999999999999999999999999999999999999999753 34588999
Q ss_pred ccCcccccc
Q 001403 698 AENKSEVEK 706 (1084)
Q Consensus 698 ~d~~i~~w~ 706 (1084)
.+|.|++|+
T Consensus 495 w~G~Ikiwd 503 (503)
T KOG0282|consen 495 WDGLIKIWD 503 (503)
T ss_pred cCceeEecC
Confidence 999999996
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=255.18 Aligned_cols=666 Identities=15% Similarity=0.148 Sum_probs=363.2
Q ss_pred ceEEEEEcCCcc-ccceeeeecCCCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEccCCcccc---ceeeeecccccEeEE
Q 001403 365 RNFKVWDIGACS-MLFKTALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDAR---QQLEIDAHVGNVNDL 439 (1084)
Q Consensus 365 ~~v~iwd~~~~~-~~~~~~~~~~h~~~V~~v~fsp-dg~~las~~~dg~v~iwd~~~~~~~~---~~~~l~~h~~~V~~l 439 (1084)
+.+-|--+..+. ......++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..|-... .-..+.+..-.|.++
T Consensus 55 ~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l 134 (1012)
T KOG1445|consen 55 GKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECL 134 (1012)
T ss_pred ceEEEEeccccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEe
Confidence 344555554332 2334456889999999999999 67799999999999999998443211 111233444578999
Q ss_pred EeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc-eEeec
Q 001403 440 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYD 518 (1084)
Q Consensus 440 ~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~ 518 (1084)
.|+|.... +++++ ..|+++|||+.+++.+..+.+|.+.|.++.| +.||.+|++.+.|+.|+|||.+.... +...+
T Consensus 135 ~fHpTaDg-il~s~-a~g~v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te 210 (1012)
T KOG1445|consen 135 RFHPTADG-ILASG-AHGSVYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTE 210 (1012)
T ss_pred ecccCcCc-eEEec-cCceEEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCcccccc
Confidence 99998775 45554 4899999999999999999999999999999 67899999999999999999987544 44445
Q ss_pred CCCC-eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-ceEeeeeeccccccCceEEEEEcCCCCEEEEE-ECCCcEE
Q 001403 519 APGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIK 595 (1084)
Q Consensus 519 ~~~~-~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~ 595 (1084)
.|++ .-..+.|..+-.+|++.+.+......|++||.+. +..+.++.... ...+.---|.||.+.++.+ -.+.+++
T Consensus 211 ~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~--stGvLiPl~DpDt~llfLaGKG~~~l~ 288 (1012)
T KOG1445|consen 211 GHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDS--STGVLIPLYDPDTRLLFLAGKGTNKLF 288 (1012)
T ss_pred ccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeec--ccceEeeeecCCCceEEEecCCcceEE
Confidence 5544 3345677777667887777655567799999875 33444444332 2345556788998877654 4678888
Q ss_pred EEECCCCeEEE--EEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCC---------------------------C
Q 001403 596 IWDMNKVQLLT--TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE---------------------------S 646 (1084)
Q Consensus 596 iwd~~~~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~---------------------------~ 646 (1084)
.+.+...+..- .++.... ......+.-|...+-+..+. ..+++.+.. +
T Consensus 289 ~lE~~d~qPyLs~v~~~tle-~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G 365 (1012)
T KOG1445|consen 289 MLEMQDRQPYLSHVFELTLE-EQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRG 365 (1012)
T ss_pred EEEecCCCcchhhhhhhcch-hhhccceecchhhhhhcchh--hhhheecccCceeecccccchhhhhhhhhhhCccccC
Confidence 88876544321 1110000 00011111111100000000 000000000 0
Q ss_pred C-----eeeeccccccceeEEEEcCCCcee--------------eee-------------ccCceeEecCCCCCCCCccc
Q 001403 647 N-----SVDAAGVLSDNLRKLSVNPISTVT--------------GAG-------------IANGSVSVNEDPKEDVKPEI 694 (1084)
Q Consensus 647 ~-----~~~~~~~~~~~i~~~~~~p~~~~~--------------~~~-------------~~~~~~~~~~~~s~~~~~l~ 694 (1084)
. .-.-+.+....+..+.+.|....- ..+ .....-. .++..|+-..--
T Consensus 366 ~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~-~~~~~Pd~~~qp 444 (1012)
T KOG1445|consen 366 AEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNS-SSNNVPDVQEQP 444 (1012)
T ss_pred CccCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccc-cccCCCccccCC
Confidence 0 000000111111111111100000 000 0000000 000011100000
Q ss_pred eecccCccccccceeecCccceeeccCC----ccccceEEEEE------EecCCCeEEEeecCCceEEe------eccC-
Q 001403 695 SVEAENKSEVEKPLFARPSECQSLLLPS----KVKANKISRLT------YNNGGQAIFALASNGVHLMW------RWPR- 757 (1084)
Q Consensus 695 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~----~~~~~~i~~l~------~s~~g~~l~~~~~dg~i~vw------~~~~- 757 (1084)
+......+|-.+....+..........+ .+..+++..+. .-|...- ++ .+-.+..+. ..+.
T Consensus 445 aV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~p-lt-~~~s~~s~~~P~~~ksvPe~ 522 (1012)
T KOG1445|consen 445 AVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTP-LT-DSVSTPSVVGPAFGKSVPEQ 522 (1012)
T ss_pred CcCcchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcc-cc-cccccccccCccccccCCCC
Confidence 0000011111110000000000000000 00000000000 0000000 00 000000000 0000
Q ss_pred --Ccc----CcCccccee----------cCCeeecCCCCCcc----ccccCcCCCCCCCccEEEecCCCCEEEEE---eC
Q 001403 758 --NDL----TLSTEATTK----------VPPRLYQPRHGPQF----MVNDTTDSNSQEAVPCFALSKNDAYLFSA---SG 814 (1084)
Q Consensus 758 --~~~----~~~~~~~~~----------~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~l~~s~dg~~l~~~---sd 814 (1084)
..+ +........ +.+.-|.-..|... ....+...+..-+-.+=-|..+.+++|+- +.
T Consensus 523 ~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~g 602 (1012)
T KOG1445|consen 523 PPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSG 602 (1012)
T ss_pred CCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCC
Confidence 000 000000000 00111111111100 00001110111112222345566677653 47
Q ss_pred CeEEEEEcCC-ceeEEE-EcC--CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-------eeeeeecccccCEEE
Q 001403 815 GVISLYIVMT-FKTILT-IMP--PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-------EVISKLEGHSKRVTG 883 (1084)
Q Consensus 815 g~i~vwd~~~-~~~~~~-~~~--~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~-------~~~~~l~~h~~~V~~ 883 (1084)
|.|.||++.. |+.... +.+ ....|+.+.|.|.|...||++++||.|++|.+..+ .....+.+|...|++
T Consensus 603 G~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~s 682 (1012)
T KOG1445|consen 603 GVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITS 682 (1012)
T ss_pred ceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEE
Confidence 8999999974 332211 111 34579999999999999999999999999999764 345678899999999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcce
Q 001403 884 LVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTC 961 (1084)
Q Consensus 884 l~~sp-d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~ 961 (1084)
+.|+| -...|++++.|.+|++||+.++. ....+.+|.. .|..++|||||+.+|+ +.||+|++|+..+++.
T Consensus 683 lRfHPLAadvLa~asyd~Ti~lWDl~~~~-----~~~~l~gHtd---qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 683 LRFHPLAADVLAVASYDSTIELWDLANAK-----LYSRLVGHTD---QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred EEecchhhhHhhhhhccceeeeeehhhhh-----hhheeccCcC---ceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence 99998 45789999999999999999854 3445667776 8999999999999999 7999999999987765
Q ss_pred eeEeecC-CCCCEEEEEEccCCCEEEEEeCCC----cEEEEEcCCCcee--EEeccccccCCCCcccceeeeEEEECCCC
Q 001403 962 LKQWFPI-SSVPISQATFSCDCRMVFTSFVDG----TLSIHEASNLEVQ--CRILSTAYLRPTTSCLHVYPHAIAAHPLK 1034 (1084)
Q Consensus 962 ~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~dg----~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1034 (1084)
...--.+ -..+-..+.|.-||+++++.+-|. .|.+||.++.... ..... ...+ .++-=.++++.
T Consensus 755 pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~l--Dvap-------s~LvP~YD~Ds 825 (1012)
T KOG1445|consen 755 PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVL--DVAP-------SPLVPHYDYDS 825 (1012)
T ss_pred ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeee--cccC-------ccccccccCCC
Confidence 4321111 134556788999999999888764 5888988876432 11110 0000 01111366655
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCc
Q 001403 1035 PTQFAVGLTNGEVYVIEPNEPGDTW 1059 (1084)
Q Consensus 1035 ~~~l~~~~~dg~v~vw~~~~~~~~~ 1059 (1084)
+..|++|-.|..|..|++..+.+-.
T Consensus 826 ~~lfltGKGD~~v~~yEv~~esPy~ 850 (1012)
T KOG1445|consen 826 NVLFLTGKGDRFVNMYEVIYESPYL 850 (1012)
T ss_pred ceEEEecCCCceEEEEEecCCCcee
Confidence 7789999999999999998776543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=268.28 Aligned_cols=285 Identities=23% Similarity=0.343 Sum_probs=253.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
+.+|..+|.+++|+|++++|++++.+|.|.+|++.+++... .+..|...+..+.|+|+++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56799999999999999999999999999999999876443 6778999999999999998 799999999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 464 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
+.+++.+..+..|...+.++.|.+. +.++++++.+|.+.+||+.+.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 9998889999999999999999654 578888888999999999988877788878889999999999998888763
Q ss_pred CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEe
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 623 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 623 (1084)
++.|.+||+.+++.+..+..+. ..+.++.|+|+++.+++++.++.|++||+.+++.+..+..+.. .+.+++|+
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~ 228 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFS 228 (289)
T ss_pred --CCcEEEEEccccccceeEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEc
Confidence 5669999999998888888776 7899999999999999999999999999999888888754433 58999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccc
Q 001403 624 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 703 (1084)
Q Consensus 624 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 703 (1084)
|++.++++++.++.+++|+..+++....+..+...+.++.++ +++..+++++.|+.++
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS----------------------PDGKRLASGSADGTIR 286 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEEC----------------------CCCCEEEEecCCCeEE
Confidence 998888888889999999999988888888888889988887 5677889999999999
Q ss_pred ccc
Q 001403 704 VEK 706 (1084)
Q Consensus 704 ~w~ 706 (1084)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 986
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-28 Score=296.84 Aligned_cols=320 Identities=14% Similarity=0.184 Sum_probs=247.1
Q ss_pred ceEEEEEcCCccccce--eeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCC----cccc-ceeeeecccccEe
Q 001403 365 RNFKVWDIGACSMLFK--TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDAR-QQLEIDAHVGNVN 437 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~--~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~----~~~~-~~~~l~~h~~~V~ 437 (1084)
|.+++|+..+...... ..-+..|...|.+++|+|+|++||+|+.|+.|+|||..+. .... ....+. +...|.
T Consensus 458 gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~ 536 (793)
T PLN00181 458 GLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLS 536 (793)
T ss_pred hhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCcee
Confidence 6778888876443221 1124458999999999999999999999999999998642 1111 111233 346799
Q ss_pred EEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee
Q 001403 438 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 517 (1084)
Q Consensus 438 ~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 517 (1084)
+++|++.... +|++++.|++|++||+.+++.+..+.+|.+.|++++|++. ++.+|++|+.||.|++||+.+......+
T Consensus 537 ~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 537 GICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 9999886433 7999999999999999999999999999999999999753 5679999999999999999988777666
Q ss_pred cCCCCeEEEEEEc-CCCCEEEEEeeCCCCCeeEEEecCCCce-EeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEE
Q 001403 518 DAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 595 (1084)
Q Consensus 518 ~~~~~~i~~~~~s-~d~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 595 (1084)
..+ ..+.++.|+ ++|.++++++. ++.|++||+++++ .+..+.+|. ..|.++.|. ++..+++++.|++|+
T Consensus 615 ~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~---~~V~~v~f~-~~~~lvs~s~D~~ik 685 (793)
T PLN00181 615 KTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHS---KTVSYVRFV-DSSTLVSSSTDNTLK 685 (793)
T ss_pred ecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCC---CCEEEEEEe-CCCEEEEEECCCEEE
Confidence 644 578899995 57999999875 6779999998765 456677777 889999997 678999999999999
Q ss_pred EEECCCC------eEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCc
Q 001403 596 IWDMNKV------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 669 (1084)
Q Consensus 596 iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~ 669 (1084)
+||+..+ ..+..+..+.. .+..++|+|++.+|++|+.|+.|++|+......+.........
T Consensus 686 iWd~~~~~~~~~~~~l~~~~gh~~--~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~----------- 752 (793)
T PLN00181 686 LWDLSMSISGINETPLHSFMGHTN--VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTID----------- 752 (793)
T ss_pred EEeCCCCccccCCcceEEEcCCCC--CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCC-----------
Confidence 9999743 56677766543 5788999999999999999999999997755332211100000
Q ss_pred eeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCc
Q 001403 670 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV 749 (1084)
Q Consensus 670 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 749 (1084)
.. .. .....+...|.+++|++++..+++++.+|.
T Consensus 753 -----------------------~~---------------------~~--~~~~~~~~~V~~v~ws~~~~~lva~~~dG~ 786 (793)
T PLN00181 753 -----------------------PV---------------------SG--LEVDDASQFISSVCWRGQSSTLVAANSTGN 786 (793)
T ss_pred -----------------------cc---------------------cc--cccCCCCcEEEEEEEcCCCCeEEEecCCCc
Confidence 00 00 000124567999999999999999999999
Q ss_pred eEEeec
Q 001403 750 HLMWRW 755 (1084)
Q Consensus 750 i~vw~~ 755 (1084)
|++|++
T Consensus 787 I~i~~~ 792 (793)
T PLN00181 787 IKILEM 792 (793)
T ss_pred EEEEec
Confidence 999985
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-30 Score=239.03 Aligned_cols=290 Identities=16% Similarity=0.190 Sum_probs=246.2
Q ss_pred eecccCCCCceEEEEcC---CCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEE
Q 001403 328 QTLIEGSSSPMSMDFHP---VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 404 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~sp---dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la 404 (1084)
.+-+||+.+|..++||| ||-+|++++.| +.--+-+-+++...- .+.||++.|+...+..+..+-|
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd---------~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~~aa 75 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKD---------GKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNATRAA 75 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccC---------CCchhccCCCCCcEE---eeeccCcceeeeecCchhhhhh
Confidence 45689999999999986 99999999888 222222223333322 3789999999999999999999
Q ss_pred EEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc-eeeEeccCCCcEEEE
Q 001403 405 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSL 483 (1084)
Q Consensus 405 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~-~~~~~~~h~~~v~~~ 483 (1084)
+++.|-+.+|||.-+|..+. .+ .|..-|.+++|+.|.. +|++|+.++.++|+|++..+ +..++.+|.+.|..+
T Consensus 76 saaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v 149 (334)
T KOG0278|consen 76 SAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTV 149 (334)
T ss_pred hhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCCCCcceeE
Confidence 99999999999999998766 33 6888999999999999 79999999999999998654 567899999999999
Q ss_pred eecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeee
Q 001403 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 563 (1084)
Q Consensus 484 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 563 (1084)
.|... .+.+++.+.|++||+||..++.....+... .++.++.+++||++|.++. .+.|..||..+-..+..+
T Consensus 150 ~wc~e--D~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~-----gssV~Fwdaksf~~lKs~ 221 (334)
T KOG0278|consen 150 LWCHE--DKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAY-----GSSVKFWDAKSFGLLKSY 221 (334)
T ss_pred EEecc--CceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEec-----CceeEEeccccccceeec
Confidence 99653 368888899999999999999888777654 4789999999999998875 345999999999988888
Q ss_pred eccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 564 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 564 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
.... .|.+...+|+...+++|++|+.++.||..+|+.+..+. .++..+|.|+.|+|||...++|+.||+|++|.+
T Consensus 222 k~P~----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 222 KMPC----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred cCcc----ccccccccCCCceEEecCcceEEEEEeccCCceeeecc-cCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 7655 78999999999999999999999999999999988862 234457999999999999999999999999998
Q ss_pred CCCCe
Q 001403 644 PESNS 648 (1084)
Q Consensus 644 ~~~~~ 648 (1084)
..++.
T Consensus 297 ~~~~~ 301 (334)
T KOG0278|consen 297 TPGKT 301 (334)
T ss_pred cCCCc
Confidence 76643
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=235.69 Aligned_cols=303 Identities=17% Similarity=0.213 Sum_probs=243.4
Q ss_pred ccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCC------cc---------ccceeeeecCC
Q 001403 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGA------CS---------MLFKTALVRDP 387 (1084)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~------~~---------~~~~~~~~~~h 387 (1084)
+.-....|..|...+.+.+|||||.++|+|+.| ..|+|.|++. .. .......+-+|
T Consensus 101 ~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD---------~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH 171 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAFSPDGSLVATGSAD---------ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDH 171 (430)
T ss_pred cccceEEEeecccceeeeeeCCCCcEEEccCCc---------ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhc
Confidence 344556789999999999999999999999988 9999999972 11 10112246789
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC
Q 001403 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 467 (1084)
Q Consensus 388 ~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g 467 (1084)
.++|+++.|+|....|++|+.|++|+++|.......+..+.+ ....+|.++.|.|.|. +++.|....++++||+++-
T Consensus 172 ~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~ 248 (430)
T KOG0640|consen 172 VDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTY 248 (430)
T ss_pred cCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccce
Confidence 999999999999999999999999999999765443333222 3456899999999999 8899998999999999998
Q ss_pred ceeeEe---ccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec-CC-CCeEEEEEEcCCCCEEEEEeeC
Q 001403 468 SRTYSF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-AP-GLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 468 ~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~-~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
++...- ..|.+.|+++.++ +.+.+.++++.||.|++||--+.++...+. .| +..|.+..|..+|+++++.+.
T Consensus 249 QcfvsanPd~qht~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~- 325 (430)
T KOG0640|consen 249 QCFVSANPDDQHTGAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK- 325 (430)
T ss_pred eEeeecCcccccccceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC-
Confidence 886544 4699999999994 467899999999999999988777766553 33 447999999999999999876
Q ss_pred CCCCeeEEEecCCCceEeeeeeccccccC--ceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcce
Q 001403 543 KEGESFLVEWNESEGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPR 619 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 619 (1084)
+..+++|.+.+++.+..+.|....+. .-+...|+....+++.-. ..+.++-||.+++..+..+.. ++...+..
T Consensus 326 ---DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~ 401 (430)
T KOG0640|consen 326 ---DSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRW 401 (430)
T ss_pred ---cceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceE
Confidence 77899999999999999987631111 123455777777777744 457899999999887776654 34456899
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcC
Q 001403 620 ICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 620 v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
+.-+|.+.-+++++.|..+|+|--.
T Consensus 402 i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 402 IVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred EEeCCCCCceeeecccceeeeeeec
Confidence 9999999999999999999999643
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=243.71 Aligned_cols=289 Identities=16% Similarity=0.206 Sum_probs=250.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccc-----eeeeecccccEeEEEeecCCCcEEEEEEeCCCcEE
Q 001403 386 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ-----QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 460 (1084)
Q Consensus 386 ~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~-----~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~ 460 (1084)
|.+.-+.|..|||||+||++|+.||-|.+||..+|+..+- ...+--+..+|.|+.||.|.. ++++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--MlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--MLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--HhhccCcCCcEE
Confidence 4567788999999999999999999999999999975331 123445778999999999999 899999999999
Q ss_pred EEECCCCceeeEec-cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEE
Q 001403 461 VWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 539 (1084)
Q Consensus 461 vwd~~~g~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 539 (1084)
||.+++|.|++.|. .|...|+++.| +.|+..+++++.|.++++--+.+++...++.+|..-|....|++||..++++
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~F--SrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSF--SRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEE--ccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 99999999999996 89999999999 4567899999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCC-CCEEEEEECCCcEEEEECCCCeEEEEEcCC-CCCCCc
Q 001403 540 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPEN 617 (1084)
Q Consensus 540 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v 617 (1084)
+. +++|.+|+..+.+++.+|+... ...+|..+-.-|. ..+++++...++++|.++. |+.++.+... ......
T Consensus 367 Ss----DgtvkvW~~KtteC~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdF 440 (508)
T KOG0275|consen 367 SS----DGTVKVWHGKTTECLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDF 440 (508)
T ss_pred cC----CccEEEecCcchhhhhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCce
Confidence 87 7779999999999999887654 3467777777665 4688889999999999984 6777777543 222346
Q ss_pred ceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceec
Q 001403 618 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 697 (1084)
Q Consensus 618 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 697 (1084)
.+.+.+|.|.++.+.+.|+.++.+...+++.-..+..|...+..++-. |..+.+++-+
T Consensus 441 i~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HH----------------------PHqNllAsYs 498 (508)
T KOG0275|consen 441 INAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHH----------------------PHQNLLASYS 498 (508)
T ss_pred EEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccC----------------------cccchhhhhc
Confidence 678899999999999999999999999999999999888888777766 5677889999
Q ss_pred ccCcccccc
Q 001403 698 AENKSEVEK 706 (1084)
Q Consensus 698 ~d~~i~~w~ 706 (1084)
.||.+++|.
T Consensus 499 EDgllKLWk 507 (508)
T KOG0275|consen 499 EDGLLKLWK 507 (508)
T ss_pred ccchhhhcC
Confidence 999999995
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=236.49 Aligned_cols=288 Identities=14% Similarity=0.178 Sum_probs=256.4
Q ss_pred ecCCCCCeEEEEEcC---CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEE
Q 001403 384 VRDPGVSVNRVVWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 460 (1084)
Q Consensus 384 ~~~h~~~V~~v~fsp---dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~ 460 (1084)
..||+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+. ++.+|.+.|+......+.. ..++++.|-+.+
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadftak 84 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTAK 84 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchhh
Confidence 678999999999997 89999999999999999999998777 8899999999999988877 689999999999
Q ss_pred EEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCC-ceEeecCCCCeEEEEEEcCCCCEEEEE
Q 001403 461 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSC 539 (1084)
Q Consensus 461 vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~ 539 (1084)
|||.-+|..+++|. |...|.+++| +.|.++|++|+.++.+|+||++..+ +..++..+.+.|..+.|....+.+++.
T Consensus 85 vw~a~tgdelhsf~-hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 85 VWDAVTGDELHSFE-HKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhhhh-hhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence 99999999999997 8999999999 5577899999999999999998765 466788999999999999999999887
Q ss_pred eeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcce
Q 001403 540 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 619 (1084)
Q Consensus 540 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 619 (1084)
+. ++.|++||.+++..++++.... +|.++.++++|.++.++ ..+.|.+||..+-.+++.+..... |.+
T Consensus 162 ad----d~tVRLWD~rTgt~v~sL~~~s----~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~n---V~S 229 (334)
T KOG0278|consen 162 AD----DKTVRLWDHRTGTEVQSLEFNS----PVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCN---VES 229 (334)
T ss_pred cc----CCceEEEEeccCcEEEEEecCC----CCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccc---ccc
Confidence 54 6679999999999999998754 89999999999766554 557899999999999998876654 888
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCCeeeec-cccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecc
Q 001403 620 ICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 698 (1084)
Q Consensus 620 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 698 (1084)
...+|+...+++|+.|..++.||..++..+... ++|.++|-|+.|+ |+|...++|+.
T Consensus 230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS----------------------PdGE~yAsGSE 287 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS----------------------PDGELYASGSE 287 (334)
T ss_pred ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC----------------------CCCceeeccCC
Confidence 999999999999999999999999999998885 9999999999997 67888899999
Q ss_pred cCccccccceeecCc
Q 001403 699 ENKSEVEKPLFARPS 713 (1084)
Q Consensus 699 d~~i~~w~~~~~~~~ 713 (1084)
||+|++|....+...
T Consensus 288 DGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 288 DGTIRLWQTTPGKTY 302 (334)
T ss_pred CceEEEEEecCCCch
Confidence 999999998754433
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=275.85 Aligned_cols=301 Identities=19% Similarity=0.265 Sum_probs=248.0
Q ss_pred ccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcc---------ccceeeeecCCCCCeEEEEEcCCCC
Q 001403 331 IEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACS---------MLFKTALVRDPGVSVNRVVWSPDGS 401 (1084)
Q Consensus 331 ~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~---------~~~~~~~~~~h~~~V~~v~fspdg~ 401 (1084)
..+...|.+++.+|||..+|+|. ...++.++||+.+.-. ..........|.+.|+|+.|||||+
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgG-------q~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~ 82 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGG-------QVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS 82 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCC-------ccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC
Confidence 34456789999999999999974 1123777899975311 1112224567999999999999999
Q ss_pred EEEEEeCCCEEEEEEccC---C------------ccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 402 LLGVAYSKHIVQLYAYHG---G------------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~---~------------~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
|||+|++|+.|.||+... + +..+....+.+|...|..++|+|++. ++++++.|++|.|||..+
T Consensus 83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEcccc
Confidence 999999999999999883 1 11234557889999999999999999 999999999999999999
Q ss_pred CceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCC------CCeEEEEEEcCCCCEEEEEe
Q 001403 467 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANGRRLFSCG 540 (1084)
Q Consensus 467 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~s~d~~~l~~~~ 540 (1084)
.+.+..+++|.+.|..+.| ++-|+++++-+.|++|++|+....+....+..+ ...+..+.|||||++|++..
T Consensus 161 F~~~~vl~~H~s~VKGvs~--DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSW--DPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ceeeeeeecccccccceEE--CCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 9999999999999999999 556799999999999999997765555544333 23578899999999999987
Q ss_pred eCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCC-----CC------------EEEEEECCCcEEEEECCCCe
Q 001403 541 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KD------------QILAAGDDHVIKIWDMNKVQ 603 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~------------~l~~~~~dg~i~iwd~~~~~ 603 (1084)
.-..+...+.|.+..+.+.-..+-||. .++.+++|+|. .+ .+++|+.|++|-||.....+
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~LvGH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKDLVGHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred hccCCcceeEEEecCCceeeeeeecCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 766677889999998888889999999 89999999883 11 56779999999999998888
Q ss_pred EEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 604 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 604 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
++.....-.. ..|..++|+|||..|.+++.||+|.++.++..
T Consensus 316 Pl~vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 316 PLFVIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred chhhhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 7765543222 35899999999999999999999999998864
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=252.20 Aligned_cols=297 Identities=16% Similarity=0.226 Sum_probs=259.0
Q ss_pred CCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC
Q 001403 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 399 (1084)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd 399 (1084)
+.+|+.+...+..|.++|..+.|-++...|++|..| ..|++|++...+..+ ...+.|..+.|+.+.|.++
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~D---------r~Ik~W~v~~~k~~~-~~tLaGs~g~it~~d~d~~ 230 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSD---------RIIKLWNVLGEKSEL-ISTLAGSLGNITSIDFDSD 230 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcchhhhcchh---------hhhhhhhcccchhhh-hhhhhccCCCcceeeecCC
Confidence 678899999999999999999999999999999888 999999997665322 2347788899999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCc
Q 001403 400 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 479 (1084)
Q Consensus 400 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~ 479 (1084)
++++++++.|+.+++|++...+... +|.+|++.|+++.|..... .+++|+.|.+|++||+..+.|..++- ....
T Consensus 231 ~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~ 304 (459)
T KOG0288|consen 231 NKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSKTVL-PGSQ 304 (459)
T ss_pred CceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheecccc-cccc
Confidence 9999999999999999999986555 7889999999999998776 59999999999999999998887764 2334
Q ss_pred EEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE
Q 001403 480 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 559 (1084)
Q Consensus 480 v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~ 559 (1084)
+..|+.. ...+++|-.|+.|++||.++.........++ .|+++..+++|..+.+++. +.++.+.|+++.+.
T Consensus 305 cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~viDlRt~eI 375 (459)
T KOG0288|consen 305 CNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKVIDLRTKEI 375 (459)
T ss_pred ccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceeeeecccccE
Confidence 5555542 3578999999999999999998888887776 9999999999999999976 66799999999998
Q ss_pred eeeeecccc-ccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeE
Q 001403 560 KRTYQGLQL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 638 (1084)
Q Consensus 560 ~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 638 (1084)
...+..... .....+.+.|||++.++++|+.||.|+||++.++++...+......+.|.+++|+|-|..+++++.++.+
T Consensus 376 ~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v 455 (459)
T KOG0288|consen 376 RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAV 455 (459)
T ss_pred EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcce
Confidence 888765431 1234888999999999999999999999999999999999887766679999999999999999999999
Q ss_pred EEE
Q 001403 639 KIL 641 (1084)
Q Consensus 639 ~iw 641 (1084)
.+|
T Consensus 456 ~lW 458 (459)
T KOG0288|consen 456 TLW 458 (459)
T ss_pred Eec
Confidence 998
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-28 Score=226.66 Aligned_cols=279 Identities=18% Similarity=0.276 Sum_probs=242.0
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC-CCCEEEEE
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVA 406 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~las~ 406 (1084)
+.+.+|...|.+|+|+-||.+||+|+.| +++.||++........ ....+|.+.|..++|+| ....++++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~d---------ktv~v~n~e~~r~~~~-~~~~gh~~svdql~w~~~~~d~~ata 83 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFD---------KTVSVWNLERDRFRKE-LVYRGHTDSVDQLCWDPKHPDLFATA 83 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccC---------CceEEEEecchhhhhh-hcccCCCcchhhheeCCCCCcceEEe
Confidence 5567899999999999999999999998 9999999988744433 34788999999999998 67899999
Q ss_pred eCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeec
Q 001403 407 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 486 (1084)
Q Consensus 407 ~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~ 486 (1084)
+.|.+|++||...+++... .....+.+ .+.|+|+|+ +++.++.|..|.+.|.++-+...+.+ ....+..++|+
T Consensus 84 s~dk~ir~wd~r~~k~~~~---i~~~~eni-~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~ 156 (313)
T KOG1407|consen 84 SGDKTIRIWDIRSGKCTAR---IETKGENI-NITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWN 156 (313)
T ss_pred cCCceEEEEEeccCcEEEE---eeccCcce-EEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceeeeeeec
Confidence 9999999999999987663 33333334 578999999 89999999999999998887766554 45567778886
Q ss_pred ccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecc
Q 001403 487 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 566 (1084)
Q Consensus 487 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 566 (1084)
. ++.+++.....|.|.|-.+...++...+..|...+.|+.|+|+|+++|+|+. +..+.+||+..--+++.+.-+
T Consensus 157 ~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~isRl 230 (313)
T KOG1407|consen 157 N--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERCISRL 230 (313)
T ss_pred C--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhheeeccc
Confidence 4 3457777777899999999999999999999999999999999999999987 777999999998888999888
Q ss_pred ccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC
Q 001403 567 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 635 (1084)
Q Consensus 567 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 635 (1084)
. -+|+.+.|+.||++|++|++|..|-|=++++|..+..++..+. ...|+|+|...+||.+.+|
T Consensus 231 d---wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~---t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 231 D---WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP---TFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred c---CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC---ceeEEecCCCceeeEEecC
Confidence 8 8999999999999999999999999999999999999987655 6899999999999988775
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=248.93 Aligned_cols=284 Identities=19% Similarity=0.233 Sum_probs=239.6
Q ss_pred ccCCCCceEEEEcCCCce-eeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 001403 331 IEGSSSPMSMDFHPVQHT-LLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 409 (1084)
Q Consensus 331 ~~h~~~V~~v~~spdg~~-las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d 409 (1084)
+.|. .|.+++|||...+ +|+.+ +-.+.||+..++..... +.-....|.++.|-.||++||+|...
T Consensus 24 ke~~-~vssl~fsp~~P~d~aVt~----------S~rvqly~~~~~~~~k~---~srFk~~v~s~~fR~DG~LlaaGD~s 89 (487)
T KOG0310|consen 24 KEHN-SVSSLCFSPKHPYDFAVTS----------SVRVQLYSSVTRSVRKT---FSRFKDVVYSVDFRSDGRLLAAGDES 89 (487)
T ss_pred cccC-cceeEecCCCCCCceEEec----------ccEEEEEecchhhhhhh---HHhhccceeEEEeecCCeEEEccCCc
Confidence 4454 9999999996643 33321 27789999987665433 22245789999999999999999999
Q ss_pred CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccC
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 489 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~ 489 (1084)
|.|+|+|+++...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++||+.+......+.+|++.|.+.+++|.
T Consensus 90 G~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~- 164 (487)
T KOG0310|consen 90 GHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPA- 164 (487)
T ss_pred CcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccC-
Confidence 999999977754455 67899999999999999886 7999999999999999999987799999999999999875
Q ss_pred CCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE-eeeeecccc
Q 001403 490 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQGLQL 568 (1084)
Q Consensus 490 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~ 568 (1084)
++..++|||.||.|++||.+.......--.|+.+|..+.+-|.|..+++++ .+.+++||+.+|.. +..+..|.
T Consensus 165 ~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~~~H~- 238 (487)
T KOG0310|consen 165 NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSMFNHN- 238 (487)
T ss_pred CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhhhccc-
Confidence 457999999999999999999866555567888999999999999999987 45699999996544 44444466
Q ss_pred ccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 569 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 569 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
..|+|+++..++..|++|+-|+.+++||+.+-+.+..+...+. |.+++.+|+++.+++|..+|.+.+-+..
T Consensus 239 --KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~p---vLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 239 --KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGP---VLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred --ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccc---eeeEEecCCCceEEEecccceeeeehhh
Confidence 8999999999999999999999999999999999998876544 8999999999999999999988776443
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=225.84 Aligned_cols=286 Identities=13% Similarity=0.156 Sum_probs=239.3
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
.+.||+.+++.+.|+.+|.+|.+++.|.++.||-..+|+.+. ++.||.+.|+|++.+-+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 378899999999999999999999999999999998998776 8899999999999999999 89999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEec-----CCeEEEEECC-------CCCceEeecCCCCeEEEEEEc
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYD-------SLGARVDYDAPGLGCTRMAYS 530 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~iwd~~-------~~~~~~~~~~~~~~i~~~~~s 530 (1084)
|+++|+++.+++ ...+|..+.|++ +|++++.... .+.|.++|++ ..++...+..+...++.+-|+
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999997 677899999965 4556655543 3569999987 445577778888899999999
Q ss_pred CCCCEEEEEeeCCCCCeeEEEecCCCceE-eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEc
Q 001403 531 ANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 609 (1084)
Q Consensus 531 ~d~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 609 (1084)
|-+++|++|.. ++.|.+||+++|+. +..-..|. ..|+.+.+++|..++++++.|.+-++||..+-+.++++.
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~---~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHS---SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhc---cccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 99999999976 66799999999854 44445565 799999999999999999999999999999999999997
Q ss_pred CCCCCCCcceEEEecCCCEEEEEECCCeEEE--------------EEcCCCCeeeeccccccceeEEEEcCCCceeeeec
Q 001403 610 AGGGLPENPRICFNKNGTLLAVIANENRIKI--------------LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 675 (1084)
Q Consensus 610 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i--------------wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~ 675 (1084)
... +|++.+++|....++.|+.....-+ |++-..+.+...++|-++|++++++
T Consensus 230 te~---PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh---------- 296 (327)
T KOG0643|consen 230 TER---PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH---------- 296 (327)
T ss_pred ecc---cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC----------
Confidence 654 4899999998888877765433222 2222224566778999999999998
Q ss_pred cCceeEecCCCCCCCCccceecccCccccccce
Q 001403 676 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 676 ~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
|+|+..++|+.||.||+..++
T Consensus 297 ------------PdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 297 ------------PDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ------------CCCcccccCCCCceEEEEEec
Confidence 678888889999988886543
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=226.05 Aligned_cols=301 Identities=13% Similarity=0.215 Sum_probs=243.8
Q ss_pred eeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEE
Q 001403 428 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 507 (1084)
Q Consensus 428 ~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd 507 (1084)
.+.||..+++.+.|+.+|. +|++|+.|.++.||-..+|+.+.++.||.+.|+++.. +.+...+++|+.|.++++||
T Consensus 5 ~l~GHERplTqiKyN~eGD--LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Di--d~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD--LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDI--DWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred ccccCccccceEEecCCCc--EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEe--cCCcceeeeccccceeEEEE
Confidence 4679999999999999999 9999999999999998999999999999999999998 44668999999999999999
Q ss_pred CCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCC-CCCeeEEEecCC-------CceEeeeeeccccccCceEEEEEc
Q 001403 508 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNES-------EGAIKRTYQGLQLQHNSVSVVHFD 579 (1084)
Q Consensus 508 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~-~~~~~i~~wd~~-------~~~~~~~~~~~~~~~~~v~~~~~s 579 (1084)
+++++++..+... .+|..+.|+++|++++.+.... ...+.|.++|++ ..++...+..+. ..++.+.|+
T Consensus 81 v~tGk~la~~k~~-~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~---skit~a~Wg 156 (327)
T KOG0643|consen 81 VETGKQLATWKTN-SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD---SKITSALWG 156 (327)
T ss_pred cCCCcEEEEeecC-CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc---cceeeeeec
Confidence 9999998887654 4899999999999998876422 124568899888 455677777776 889999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeE-EEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccc
Q 001403 580 TAKDQILAAGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN 658 (1084)
Q Consensus 580 ~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 658 (1084)
|-+++|++|.+||.|.+||+++|.. +.....|.. .|+.+.+++|..++++++.|.+-++||..+...+.+..
T Consensus 157 ~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~--~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~----- 229 (327)
T KOG0643|consen 157 PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSS--KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT----- 229 (327)
T ss_pred ccCCEEEEecCCCcEEEEEcccCceeeechhhhcc--ccccccccCCcceEEecccCccceeeeccceeeEEEee-----
Confidence 9999999999999999999999854 445455544 69999999999999999999999999998776555443
Q ss_pred eeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCC
Q 001403 659 LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG 738 (1084)
Q Consensus 659 i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g 738 (1084)
...++++.+++|-.
T Consensus 230 ------------------------------------------------------------------te~PvN~aaisP~~ 243 (327)
T KOG0643|consen 230 ------------------------------------------------------------------TERPVNTAAISPLL 243 (327)
T ss_pred ------------------------------------------------------------------ecccccceeccccc
Confidence 22355666677766
Q ss_pred CeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--CC-
Q 001403 739 QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GG- 815 (1084)
Q Consensus 739 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--dg- 815 (1084)
..++.++.....- +.+.+ .|
T Consensus 244 d~VilgGGqeA~d---------------------------------------------------------VTTT~~r~GK 266 (327)
T KOG0643|consen 244 DHVILGGGQEAMD---------------------------------------------------------VTTTSTRAGK 266 (327)
T ss_pred ceEEecCCceeee---------------------------------------------------------eeeecccccc
Confidence 6565554431000 01111 12
Q ss_pred -eEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 001403 816 -VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 867 (1084)
Q Consensus 816 -~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~ 867 (1084)
..++|++-..+.+...++|-++|++++|+| +|+..++|++||.|++...+.
T Consensus 267 FEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 267 FEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred hhhhHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEEEEEecc
Confidence 245666666778888999999999999999 999999999999999986653
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=235.09 Aligned_cols=310 Identities=17% Similarity=0.264 Sum_probs=240.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCC-cEEEEEEeCCCcEEEEECC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAV 465 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~-~l~l~s~~~d~~i~vwd~~ 465 (1084)
|.+.|.++.-. ++.+++|+.||.+++||..+. ....+.||.++|.+++|--... .-.+++++.|.++++|-++
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk----~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK----SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCCc----eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 88999999888 889999999999999998864 2336889999999888843322 1159999999999999988
Q ss_pred CCcee----eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEee
Q 001403 466 TGSRT----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 466 ~g~~~----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 541 (1084)
.+... ....||...|.++.. .++|..+++|+.|.++.+|+.... ..-.++.... -+.++.
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~-~~~~~E~~s~-------~rrk~~------ 241 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETD-EEDELESSSN-------RRRKKQ------ 241 (423)
T ss_pred CchhhhhHHhHhcccccceeEEEe--cCCCCeEEeecccceeeecccCCC-ccccccccch-------hhhhhh------
Confidence 77543 444699999999988 557789999999999999983321 1111111000 000000
Q ss_pred CCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEE
Q 001403 542 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 621 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 621 (1084)
-+-=...++.++..+.||. .+|.++.|++ ...+++++.|.+|+.||+.++..+..+.... ...++.
T Consensus 242 -------~~~~~~~~r~P~vtl~GHt---~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~ 307 (423)
T KOG0313|consen 242 -------KREKEGGTRTPLVTLEGHT---EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCIS 307 (423)
T ss_pred -------hhhhcccccCceEEecccc---cceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEee
Confidence 0000123456777889998 9999999988 6789999999999999999999988886543 378888
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCc
Q 001403 622 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 701 (1084)
Q Consensus 622 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~ 701 (1084)
.+|..++|++|+.|..+++||.+++.
T Consensus 308 ~~~~~~Ll~~gssdr~irl~DPR~~~------------------------------------------------------ 333 (423)
T KOG0313|consen 308 YSPLSKLLASGSSDRHIRLWDPRTGD------------------------------------------------------ 333 (423)
T ss_pred cccccceeeecCCCCceeecCCCCCC------------------------------------------------------
Confidence 88888888888888888888766430
Q ss_pred cccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCC
Q 001403 702 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 781 (1084)
Q Consensus 702 i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1084)
T Consensus 334 -------------------------------------------------------------------------------- 333 (423)
T KOG0313|consen 334 -------------------------------------------------------------------------------- 333 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEE
Q 001403 782 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 861 (1084)
Q Consensus 782 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~ 861 (1084)
| .-...++.+|...|.++.|+|.+...|++|+.|++++
T Consensus 334 ------------------------g------------------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k 371 (423)
T KOG0313|consen 334 ------------------------G------------------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK 371 (423)
T ss_pred ------------------------C------------------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEE
Confidence 0 0011345567778888888887788999999999999
Q ss_pred EEEcCCce-eeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001403 862 IYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 862 iwd~~~~~-~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~ 909 (1084)
+||+++.+ ++..+.+|.+.|.++.|+ ++.++++||.|.+|+|+.-..
T Consensus 372 lWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 372 LWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred EEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence 99999987 899999999999999997 678999999999999987553
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-27 Score=225.19 Aligned_cols=276 Identities=17% Similarity=0.255 Sum_probs=222.2
Q ss_pred CCCCceEEEEcC-CCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCE
Q 001403 333 GSSSPMSMDFHP-VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 411 (1084)
Q Consensus 333 h~~~V~~v~~sp-dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~ 411 (1084)
-.+.|.+++||| ...++++++|| ++||+|+++....... .....|.++|.+++|+.||..+++|+.|+.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD---------~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWD---------GTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ 95 (347)
T ss_pred cccchheeEeccccCceEEecccC---------CceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCc
Confidence 356999999999 66777789999 9999999987533333 235669999999999999999999999999
Q ss_pred EEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCC
Q 001403 412 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 491 (1084)
Q Consensus 412 v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~ 491 (1084)
+++||+.+++.. .+..|.++|..+.|-+...+..|+||+.|++|++||.+...++.++. -.+.++++.. .-
T Consensus 96 ~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv----~~ 166 (347)
T KOG0647|consen 96 AKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADV----LY 166 (347)
T ss_pred eEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhc----cC
Confidence 999999998643 47789999999999887665589999999999999999999988886 5667777754 22
Q ss_pred cEEEEEecCCeEEEEECCCCCceEee-c-CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc--eEeeeeeccc
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARVDY-D-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQ 567 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~~~-~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~ 567 (1084)
.+++.+..++.|.+|++++....... . .-.-.+.+++..+|....+.|+. +|.+.+..+..+ +.-..|+.|.
T Consensus 167 pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~nFtFkCHR 242 (347)
T KOG0647|consen 167 PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKDNFTFKCHR 242 (347)
T ss_pred ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccCceeEEEec
Confidence 58899999999999999765543322 1 22336889999898888888876 555666666655 5556677776
Q ss_pred cc------cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEE
Q 001403 568 LQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 633 (1084)
Q Consensus 568 ~~------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 633 (1084)
.. ...|++++|+|....|++++.||++.+||-.....++..+.+.. +|.+.+|+.+|.++|.+.
T Consensus 243 ~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q--pItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 243 STNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ--PITCCSFNRNGSIFAYAL 312 (347)
T ss_pred cCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC--ccceeEecCCCCEEEEEe
Confidence 21 23578899999999999999999999999988777777665543 699999999999888764
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=233.38 Aligned_cols=283 Identities=20% Similarity=0.358 Sum_probs=235.5
Q ss_pred ccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC---CCEEEEEe
Q 001403 331 IEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSLLGVAY 407 (1084)
Q Consensus 331 ~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd---g~~las~~ 407 (1084)
..|.+.|.++... ++++.+|++| |.++|||.+..... ...||.++|.+++|--. ...+++++
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYD---------g~~riWd~~Gk~~~----~~~Ght~~ik~v~~v~~n~~~~~fvsas 166 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYD---------GTSRIWDLKGKSIK----TIVGHTGPIKSVAWVIKNSSSCLFVSAS 166 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecC---------CeeEEEecCCceEE----EEecCCcceeeeEEEecCCccceEEEec
Confidence 4678899999999 8899999999 99999999754332 36789999998887543 33699999
Q ss_pred CCCEEEEEEccCCccc-cceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC--------------------
Q 001403 408 SKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-------------------- 466 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~-------------------- 466 (1084)
.|.++++|.++.++.. .....-.||...|.+++..++|. .+++|+.|.+|+||+.++
T Consensus 167 ~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~ 244 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKRE 244 (423)
T ss_pred CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccchhhhhhhhhh
Confidence 9999999999877643 22223459999999999999999 899999999999999321
Q ss_pred -----CceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEee
Q 001403 467 -----GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 467 -----g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 541 (1084)
+.++.++.||..+|.++.|.. ...+++++.|.+|+.||+.+++....+... ..+.++..+|..++|++++.
T Consensus 245 ~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gss 320 (423)
T KOG0313|consen 245 KEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSS 320 (423)
T ss_pred hcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCC
Confidence 234677899999999999964 358999999999999999998887766544 47899999999999999987
Q ss_pred CCCCCeeEEEecCCCce---EeeeeeccccccCceEEEEEcCCCC-EEEEEECCCcEEEEECCCCe-EEEEEcCCCCCCC
Q 001403 542 SKEGESFLVEWNESEGA---IKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ-LLTTIDAGGGLPE 616 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~ 616 (1084)
+..+++||.+++. ..+.+.+|. +.|.++.|+|... +|++++.|+++++||+++.. ++..+..|.. .
T Consensus 321 ----dr~irl~DPR~~~gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D--K 391 (423)
T KOG0313|consen 321 ----DRHIRLWDPRTGDGSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND--K 391 (423)
T ss_pred ----CCceeecCCCCCCCceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc--e
Confidence 6669999999753 456788888 8999999999865 56679999999999999877 8888887754 5
Q ss_pred cceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 617 NPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 617 v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
|.++.|+. +..+++|+.|.+|+|+...
T Consensus 392 vl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 392 VLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEeccC-CceEEeccCcceEEEeccc
Confidence 88999984 6699999999999998643
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-27 Score=241.26 Aligned_cols=282 Identities=15% Similarity=0.209 Sum_probs=232.2
Q ss_pred ccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC
Q 001403 725 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 804 (1084)
Q Consensus 725 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 804 (1084)
..+.|.+++|+|...+=++.+..-.+.+|+.... .....+. .....+.++.|..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~----------------------~~~k~~s----rFk~~v~s~~fR~ 78 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR----------------------SVRKTFS----RFKDVVYSVDFRS 78 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchh----------------------hhhhhHH----hhccceeEEEeec
Confidence 4578999999998776666666666777664321 1111110 1567899999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEE
Q 001403 805 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 883 (1084)
Q Consensus 805 dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 883 (1084)
||+++++|+ .|.|++||+.+...++.+.+|..++..+.|+|+++..+++|++|+.+++||+.+......+.+|++.|.|
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 999999998 5999999988877888999999999999999999999999999999999999999887789999999999
Q ss_pred EEEcCC-CCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCccee
Q 001403 884 LVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL 962 (1084)
Q Consensus 884 l~~spd-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~ 962 (1084)
.+|+|- +.+++|||.||+|++||+.... ...+..-.++ +|..+.|-|.|..+|+++.+.|+|||+.+|...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg~-----pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHGC-----PVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCCC-----ceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 999995 5689999999999999998842 1222222222 699999999999999999999999999977665
Q ss_pred eEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEe
Q 001403 963 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1042 (1084)
Q Consensus 963 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~ 1042 (1084)
......|...|+|+++..|++.|++++-|+.|++||+.+-+.+.++.. +. + .++++.+| |+..+++|.
T Consensus 231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~----~~-----p--vLsiavs~-dd~t~viGm 298 (487)
T KOG0310|consen 231 LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY----PG-----P--VLSIAVSP-DDQTVVIGM 298 (487)
T ss_pred hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec----cc-----c--eeeEEecC-CCceEEEec
Confidence 554556999999999999999999999999999999998888877761 22 2 35677788 578999999
Q ss_pred CCCcEEEEcC
Q 001403 1043 TNGEVYVIEP 1052 (1084)
Q Consensus 1043 ~dg~v~vw~~ 1052 (1084)
.||.+.+=+.
T Consensus 299 snGlv~~rr~ 308 (487)
T KOG0310|consen 299 SNGLVSIRRR 308 (487)
T ss_pred ccceeeeehh
Confidence 9999888743
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-27 Score=264.29 Aligned_cols=306 Identities=17% Similarity=0.221 Sum_probs=240.2
Q ss_pred ccceEEEEEEecCCCeEEEee--cCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEe
Q 001403 725 KANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 802 (1084)
Q Consensus 725 ~~~~i~~l~~s~~g~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 802 (1084)
+...|.++..+|||..+++++ .||.+++|+...-.. ....++..-. .+...+. .|.+.|.|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~--k~l~~m~--~h~~sv~CVR~ 77 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLP--KHLCTMD--DHDGSVNCVRF 77 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccc--hhheeec--cccCceeEEEE
Confidence 445689999999999999999 799999998653210 1111222111 1111111 49999999999
Q ss_pred cCCCCEEEEEeC-CeEEEEEcCC------------------ceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001403 803 SKNDAYLFSASG-GVISLYIVMT------------------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 863 (1084)
Q Consensus 803 s~dg~~l~~~sd-g~i~vwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iw 863 (1084)
+|||++||+|+| +.|.+|+... .+....+.+|...|..++|+| ++.+||+++.|++|.||
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence 999999999995 7789998762 246778999999999999999 89999999999999999
Q ss_pred EcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEE
Q 001403 864 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 943 (1084)
Q Consensus 864 d~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 943 (1084)
|..+.+.+.++++|.+.|-.+.|.|-|++|||-+.|++|+||++......+ .+..+..+.........+.|||||++|
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCee
Confidence 999999999999999999999999999999999999999999977744322 444444444444568899999999999
Q ss_pred EEE--eC---CeEEEEEcCCcceeeEeecCCCCCEEEEEEcc--------CC-----C----EEEEEeCCCcEEEEEcCC
Q 001403 944 LLV--HE---THLAIYEAEELTCLKQWFPISSVPISQATFSC--------DC-----R----MVFTSFVDGTLSIHEASN 1001 (1084)
Q Consensus 944 a~~--~d---~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~--------dg-----~----~l~t~~~dg~i~vwd~~~ 1001 (1084)
++. .+ .++.|.+-.+.+.-.. +-||.+++.+++|+| +| . .+|+|+.|++|.||....
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~-LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKD-LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeee-eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 993 22 3688888766665555 558999999999998 11 1 578999999999999977
Q ss_pred CceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCCC
Q 001403 1002 LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1058 (1084)
Q Consensus 1002 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~~ 1058 (1084)
.+.+..+. ...+. ..+.++|+| ||..|.+++.||+|.+..+.+.+..
T Consensus 314 ~RPl~vi~-------~lf~~--SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 314 PRPLFVIH-------NLFNK--SIVDMSWSP-DGFSLFACSLDGTVALIHFEEKELG 360 (942)
T ss_pred CCchhhhh-------hhhcC--ceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHhC
Confidence 76654333 11111 246899999 6999999999999999999887643
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-26 Score=207.41 Aligned_cols=296 Identities=17% Similarity=0.234 Sum_probs=232.5
Q ss_pred eeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCc----------cc--cceeeeecCCCCCeEE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGAC----------SM--LFKTALVRDPGVSVNR 393 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~----------~~--~~~~~~~~~h~~~V~~ 393 (1084)
++.+|.. +..|.+++|+|.|.+-|+|+.. ++++|--...- .. ....+.-+.|.+.|.|
T Consensus 25 ~i~~l~d-sqairav~fhp~g~lyavgsns---------kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc 94 (350)
T KOG0641|consen 25 AINILED-SQAIRAVAFHPAGGLYAVGSNS---------KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYC 94 (350)
T ss_pred EEEEecc-hhheeeEEecCCCceEEeccCC---------ceEEEEccccccCcccccccccCCCeEEeeeccccCccEEE
Confidence 4445544 4599999999999999998655 77777543211 11 1111124568999999
Q ss_pred EEEcCCCCEEEEEeCCCEEEEEEc--cCCccccceeeeecccccEeEEEeecC---CCcEEEEEEe-CCCcEEEEECCCC
Q 001403 394 VVWSPDGSLLGVAYSKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG-DDKTIKVWDAVTG 467 (1084)
Q Consensus 394 v~fspdg~~las~~~dg~v~iwd~--~~~~~~~~~~~l~~h~~~V~~l~~s~d---~~~l~l~s~~-~d~~i~vwd~~~g 467 (1084)
.+|||+|.+||+|+.|.+|++.-. ++.+....-.++.-|.+.|..++|..+ +.. +|++++ .|..|.+-|..+|
T Consensus 95 ~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g 173 (350)
T KOG0641|consen 95 TAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRG 173 (350)
T ss_pred EEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCC
Confidence 999999999999999999988654 444445555578899999999999654 222 667665 4788888999999
Q ss_pred ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecC-------CCCeEEEEEEcCCCCEEEEEe
Q 001403 468 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCG 540 (1084)
Q Consensus 468 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~s~d~~~l~~~~ 540 (1084)
+..+.+.+|.+.|.++-- -++-.+++|+.|.+|++||++-......+.. ....|.+++..|.|++|+++.
T Consensus 174 ~~~~a~sghtghilalys---wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 174 QGFHALSGHTGHILALYS---WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred CcceeecCCcccEEEEEE---ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence 999999999999988742 2557999999999999999987776655432 224789999999999999987
Q ss_pred eCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC----eEEEEEcCCCCCCC
Q 001403 541 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPE 616 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~ 616 (1084)
. +....+||++.++.++.+..|. ..|.++.|+|...++++++.|..|++-|+... -.+.....| ...
T Consensus 251 ~----dssc~lydirg~r~iq~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh--kdk 321 (350)
T KOG0641|consen 251 A----DSSCMLYDIRGGRMIQRFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH--KDK 321 (350)
T ss_pred C----CCceEEEEeeCCceeeeeCCCc---cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec--cCc
Confidence 5 6668999999999999999988 89999999999999999999999999998642 122222222 334
Q ss_pred cceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 617 NPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 617 v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
+..+.|+|..-.+++.+.|.++.+|.+.
T Consensus 322 ~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 322 AIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEEecCccceeeeccCcceEEEeccC
Confidence 6788999998889999999999999764
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=260.35 Aligned_cols=297 Identities=16% Similarity=0.176 Sum_probs=224.3
Q ss_pred ceeeecc-cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEE----------
Q 001403 325 TVAQTLI-EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR---------- 393 (1084)
Q Consensus 325 ~~~~~l~-~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~---------- 393 (1084)
...+-+. .|.+.||++.||+||+|||+|..| +.|+||.+..++.... +...-.+
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD---------~virVWkVie~e~~~~------~~~~~~~~~~~~~~~s~ 321 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGED---------GVIRVWKVIESERMRV------AEGDSSCMYFEYNANSQ 321 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCC---------ceEEEEEEeccchhcc------cccccchhhhhhhhccc
Confidence 4455666 999999999999999999999888 9999999976443111 1111111
Q ss_pred ---EEEcC---CCC--EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC
Q 001403 394 ---VVWSP---DGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 465 (1084)
Q Consensus 394 ---v~fsp---dg~--~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~ 465 (1084)
+.-++ .++ ..-.+.....+.+-+..-.-.-+++..+.||.+.|..+.||.++ +|++++.|++|++|++.
T Consensus 322 ~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~ 398 (712)
T KOG0283|consen 322 IEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPG 398 (712)
T ss_pred cCccccccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCC
Confidence 11111 011 11112222222222211111123445788999999999999876 69999999999999999
Q ss_pred CCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCC
Q 001403 466 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 545 (1084)
Q Consensus 466 ~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 545 (1084)
...+++.|. |.+-|+|++|+|..| +++++|+.||.+|||++...+...-...+ .-|++++|.|||+..++|+.
T Consensus 399 ~~~CL~~F~-HndfVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~---- 471 (712)
T KOG0283|consen 399 RKECLKVFS-HNDFVTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTF---- 471 (712)
T ss_pred CcceeeEEe-cCCeeEEEEecccCC-CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEe----
Confidence 999999998 999999999999754 89999999999999999865554443333 68999999999999999998
Q ss_pred CeeEEEecCCCceEeeeeeccc-----cccCceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcce
Q 001403 546 ESFLVEWNESEGAIKRTYQGLQ-----LQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 619 (1084)
Q Consensus 546 ~~~i~~wd~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 619 (1084)
+|..++|+....+......-+. .....|+.+.|.|.. ..+++.+.|..|||+|.++..++..+.+......-..
T Consensus 472 ~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~ 551 (712)
T KOG0283|consen 472 NGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQIS 551 (712)
T ss_pred ccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCccee
Confidence 6779999988777665554322 112479999998754 3588899999999999999999999987666555667
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 620 ICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 620 v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
..|+.||++++++++|..|++|+....
T Consensus 552 Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 552 ASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred eeEccCCCEEEEeecCceEEEEeCCCC
Confidence 899999999999999999999998654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-27 Score=242.06 Aligned_cols=308 Identities=18% Similarity=0.232 Sum_probs=243.5
Q ss_pred cCCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccc--cceeeeecCCCCCeEEEEE
Q 001403 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSM--LFKTALVRDPGVSVNRVVW 396 (1084)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~--~~~~~~~~~h~~~V~~v~f 396 (1084)
+..+|..+...|.+|+..|.++++-|.|-++++|+.| .+|+.||+..... ...+.+.......|.+++|
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~D---------y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y 222 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLD---------YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY 222 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCceeeecccc---------ceEEEEecccccccchhhhccCcccccccceeee
Confidence 4567888888999999999999999999999999999 9999999975322 2222333445678999999
Q ss_pred cCCCCEEEEEeCCCEEEEEEccCCcc---------ccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC
Q 001403 397 SPDGSLLGVAYSKHIVQLYAYHGGSD---------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 467 (1084)
Q Consensus 397 spdg~~las~~~dg~v~iwd~~~~~~---------~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g 467 (1084)
|+.|..|++.+.....+|+|-..-+. ++-+..-+||...++|.+|.|+.+. .++|++.||++++||+..-
T Consensus 223 s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~~~ 301 (641)
T KOG0772|consen 223 SVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVNNT 301 (641)
T ss_pred cCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecCCc
Confidence 99999999999999999999775433 2223345689999999999999887 7999999999999999854
Q ss_pred c-eeeEec-----cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCce---EeecCCCC--eEEEEEEcCCCCEE
Q 001403 468 S-RTYSFE-----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGL--GCTRMAYSANGRRL 536 (1084)
Q Consensus 468 ~-~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~--~i~~~~~s~d~~~l 536 (1084)
+ .+..++ +..-++++++| +++|..+++|..||.|.+|+....... ..-..|.. .|++++||+||++|
T Consensus 302 k~q~qVik~k~~~g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 302 KSQLQVIKTKPAGGKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred hhheeEEeeccCCCcccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh
Confidence 3 233332 33456788888 557889999999999999998654332 23344444 89999999999999
Q ss_pred EEEeeCCCCCeeEEEecCCCc-eEeeeeeccccccCceEEEEEcCCCCEEEEEE------CCCcEEEEECCCCeEEEEEc
Q 001403 537 FSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG------DDHVIKIWDMNKVQLLTTID 609 (1084)
Q Consensus 537 ~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~ 609 (1084)
++-+. +..+.+||++.. +++....+.. ...+-+.++|||+.+.|++|. ..|++++||..+.+.++.+.
T Consensus 380 lSRg~----D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~ 454 (641)
T KOG0772|consen 380 LSRGF----DDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID 454 (641)
T ss_pred hhccC----CCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec
Confidence 99876 667999999874 4444444433 124567789999999999975 45789999999999999988
Q ss_pred CCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 610 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 610 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
... ..|..+.|+|.-+.+.+++.||.+++|--.+
T Consensus 455 i~~--aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 455 IST--ASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred CCC--ceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 663 3688999999999999999999999885443
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-27 Score=226.72 Aligned_cols=307 Identities=13% Similarity=0.194 Sum_probs=236.4
Q ss_pred CCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCcc
Q 001403 614 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 693 (1084)
Q Consensus 614 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l 693 (1084)
...+.+.+|++||.++|+|+.|..|+|+|++..-.-... .. +
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~---~e-----------------------------------m 153 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKP---KE-----------------------------------M 153 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcch---hh-----------------------------------h
Confidence 346889999999999999999999999998732000000 00 0
Q ss_pred ceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCe
Q 001403 694 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 773 (1084)
Q Consensus 694 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 773 (1084)
..+.. .....+....-.|...|..+.|.|....|++++.|++++++|+.+..... ..+
T Consensus 154 ~~~~~--------------qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr--------A~K 211 (430)
T KOG0640|consen 154 ISGDT--------------QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR--------AFK 211 (430)
T ss_pred ccCCc--------------ccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHH--------HHH
Confidence 00000 00000000011288899999999999999999999999999987542200 000
Q ss_pred eecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeC-CeEEEEEcCCceeEEEE---cCCCCCeEEEEEcCCCCc
Q 001403 774 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTI---MPPSPTATSLAFNPHDNN 849 (1084)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sd-g~i~vwd~~~~~~~~~~---~~~~~~i~~l~~s~~d~~ 849 (1084)
+ + ....+|.++.|+|.|.+|++|.+ .++++||+++.++...- ..|.+.|+++.+++ .++
T Consensus 212 ~-------------~---qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~ 274 (430)
T KOG0640|consen 212 V-------------F---QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGS 274 (430)
T ss_pred H-------------h---hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-Ccc
Confidence 0 1 15678999999999999999996 78999999998887654 35788999999999 899
Q ss_pred EEEEEeCCCeEEEEEcCCceeeeeec-cccc-CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccC
Q 001403 850 VIAIGMDDSTILIYNARSSEVISKLE-GHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 927 (1084)
Q Consensus 850 ~la~g~~dg~i~iwd~~~~~~~~~l~-~h~~-~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 927 (1084)
+.++|+.||.|++||--+++++.++. +|.+ .|.+..|+.+|+++++.|.|.+|++|.+.++.......-....+..
T Consensus 275 lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq-- 352 (430)
T KOG0640|consen 275 LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQ-- 352 (430)
T ss_pred EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccch--
Confidence 99999999999999999999998875 4654 7999999999999999999999999999997643322211111221
Q ss_pred CCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001403 928 APSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 928 ~~~v~~~~~s~dg~~la~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~ 1000 (1084)
.--+...|.....+++.- ..+.++-||.+++..+..+..+|++.+..+.-||.+.-+.||+.|..+|+|--.
T Consensus 353 -~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 353 -KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred -hhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 134567788888888874 456799999999999999999999999999999999999999999999999643
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=260.98 Aligned_cols=284 Identities=16% Similarity=0.276 Sum_probs=248.2
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCE
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 411 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~ 411 (1084)
.|...+.+..|. +.+++++..| .++.+||..++...... +.||.+.|++++|..-+.+|++|+.|.+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~---------~tl~~~~~~~~~~i~~~--l~GH~g~V~~l~~~~~~~~lvsgS~D~t 272 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDD---------STLHLWDLNNGYLILTR--LVGHFGGVWGLAFPSGGDKLVSGSTDKT 272 (537)
T ss_pred cCcchhhhheee--cCeEEecCCC---------ceeEEeecccceEEEee--ccCCCCCceeEEEecCCCEEEEEecCCc
Confidence 356688999999 6678888777 99999999887666543 8899999999999988899999999999
Q ss_pred EEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCC
Q 001403 412 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 491 (1084)
Q Consensus 412 v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~ 491 (1084)
++|||..+|++.. .+.+|.+.|.++...+. .+++|+.|.+|++|++.++.++..+.+|.++|.++... +
T Consensus 273 ~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~----~ 341 (537)
T KOG0274|consen 273 ERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD----E 341 (537)
T ss_pred EEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec----C
Confidence 9999999998877 78899999999887643 68889999999999999999999999999999999883 5
Q ss_pred cEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc-eEeeeeecccccc
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQH 570 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~ 570 (1084)
.++++|+.||+|++||+.+.+....+.+|...|.++.+.+. ..+++++. +..|++||+.++ +++..+.+|.
T Consensus 342 ~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~tl~~h~--- 413 (537)
T KOG0274|consen 342 PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHTLQGHT--- 413 (537)
T ss_pred CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhhhcCCc---
Confidence 69999999999999999999999999999999999988776 88999987 567999999999 9999999988
Q ss_pred CceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeee
Q 001403 571 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 650 (1084)
Q Consensus 571 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 650 (1084)
.-+..+. ..++++++++.|++|++||..++++++.+... +...|..+++. ...+++++.+|.+++||+.+++...
T Consensus 414 ~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 414 SLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred ccccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecccCchhh
Confidence 5665444 45789999999999999999999999999874 22345666554 4788999999999999999998776
Q ss_pred ec
Q 001403 651 AA 652 (1084)
Q Consensus 651 ~~ 652 (1084)
.+
T Consensus 489 ~l 490 (537)
T KOG0274|consen 489 TL 490 (537)
T ss_pred hh
Confidence 55
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=218.12 Aligned_cols=287 Identities=15% Similarity=0.219 Sum_probs=236.8
Q ss_pred cccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeC-
Q 001403 330 LIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS- 408 (1084)
Q Consensus 330 l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~- 408 (1084)
+..-.+.|.++.||++|.+|++.+.| .+++|||..++.+... +..++-.|..++|......++.++.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~d---------Dsl~LYd~~~g~~~~t---i~skkyG~~~~~Fth~~~~~i~sStk 77 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSED---------DSLRLYDSLSGKQVKT---INSKKYGVDLACFTHHSNTVIHSSTK 77 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCC---------CeEEEEEcCCCceeeE---eecccccccEEEEecCCceEEEccCC
Confidence 34455689999999999999998777 8999999998877654 3446678999999888777777776
Q ss_pred -CCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecc
Q 001403 409 -KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 487 (1084)
Q Consensus 409 -dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~ 487 (1084)
|.+|+.-++.+.+.++ -+.||...|.+++.+|-+. .+++++.|++|++||++..++...+.....++. +|
T Consensus 78 ~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~--Af-- 148 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIA--AF-- 148 (311)
T ss_pred CCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcce--eE--
Confidence 8899999999998777 7889999999999999998 899999999999999998888877765555554 55
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCC--ceEeec---CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee
Q 001403 488 KENIHFIFSISVDGKIKAWLYDSLG--ARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 488 ~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~---~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 562 (1084)
++.|-++|++...+.|++||++... +...+. ........+.|||||+.|+.+.. .+.+++.|.-+|..+..
T Consensus 149 Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G~~~~t 224 (311)
T KOG1446|consen 149 DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDGTVKST 224 (311)
T ss_pred CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCCcEeee
Confidence 5677888888888899999998752 222332 33557899999999999999875 67799999999999999
Q ss_pred eeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEE
Q 001403 563 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 563 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
+.++.....--...+|+||++++++|+.||+|.+|++++|..+..+.+. ....+.++.|+|....+++++ ..+.+|-
T Consensus 225 fs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s~l~fw~ 301 (311)
T KOG1446|consen 225 FSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--SNLVFWL 301 (311)
T ss_pred EeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--ceEEEEe
Confidence 9988844444467889999999999999999999999999999999875 334688999999877777664 5777886
Q ss_pred cC
Q 001403 643 TP 644 (1084)
Q Consensus 643 ~~ 644 (1084)
..
T Consensus 302 p~ 303 (311)
T KOG1446|consen 302 PD 303 (311)
T ss_pred cc
Confidence 54
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-27 Score=218.58 Aligned_cols=291 Identities=16% Similarity=0.213 Sum_probs=228.2
Q ss_pred CceEEEEcC--CCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC-CCEEEEEeCCCEE
Q 001403 336 SPMSMDFHP--VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIV 412 (1084)
Q Consensus 336 ~V~~v~~sp--dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd-g~~las~~~dg~v 412 (1084)
.=.++.||| ++++.++...... ....|++.|-++.......+...+ .-.+.+..|+||++ ...+++++.||++
T Consensus 10 ~GysvqfSPf~~nrLavAt~q~yG---l~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSL 85 (311)
T KOG0277|consen 10 HGYSVQFSPFVENRLAVATAQHYG---LAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSL 85 (311)
T ss_pred ccceeEecccccchhheeehhhcc---cccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecCceE
Confidence 346889999 4444333221111 112488999998643333222111 23578999999995 5678888999999
Q ss_pred EEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCc
Q 001403 413 QLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH 492 (1084)
Q Consensus 413 ~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~ 492 (1084)
+|||+.... .++..++.|...|.++.|++-.++ .+++++-|++|++|+...++.++++.+|...|....|+|. ..+
T Consensus 86 rl~d~~~~s--~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~-~~n 161 (311)
T KOG0277|consen 86 RLFDLTMPS--KPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPH-IPN 161 (311)
T ss_pred EEeccCCCC--cchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCC-CCC
Confidence 999955433 455578899999999999998776 5777799999999999999999999999999999999986 457
Q ss_pred EEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCC-CEEEEEeeCCCCCeeEEEecCCC-ceEeeeeecccccc
Q 001403 493 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQH 570 (1084)
Q Consensus 493 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~ 570 (1084)
+++++|.||++++||++.......+..|...+.++.|+.-. ..+++++. ++.|+.||+++ ..++..+.+|.
T Consensus 162 lfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~pl~eL~gh~--- 234 (311)
T KOG0277|consen 162 LFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRTPLFELNGHG--- 234 (311)
T ss_pred eEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhccccceeecCCc---
Confidence 99999999999999999988888899999999999999855 45666654 77899999986 45567777877
Q ss_pred CceEEEEEcCCC-CEEEEEECCCcEEEEECCCCe-EEEEEcCCCCCCCcceEEEec-CCCEEEEEECCCeEEEEEc
Q 001403 571 NSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQ-LLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILET 643 (1084)
Q Consensus 571 ~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~ 643 (1084)
..|+.+.|||.. ..|++++.|-+++|||...+. .+.+...|.. .+..+.|++ ++.++|..+-|+.++||+.
T Consensus 235 ~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 235 LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeecccccceeeecc
Confidence 899999999975 567889999999999998543 4445554433 577888887 6789999999999999984
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-26 Score=254.25 Aligned_cols=281 Identities=12% Similarity=0.135 Sum_probs=212.1
Q ss_pred CCCCceEEEEcCCCceeeeec-------ccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC-CCCEEE
Q 001403 333 GSSSPMSMDFHPVQHTLLLGL-------WDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLG 404 (1084)
Q Consensus 333 h~~~V~~v~~spdg~~las~~-------~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~la 404 (1084)
|-..|.....++|+..++++. |+... +...+|..+.+........+.||.+.|.+++|+| ++++||
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~g------g~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~La 92 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLG------STAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLF 92 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCC------ceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEE
Confidence 334566666666654444432 33111 2223333333332222335789999999999999 899999
Q ss_pred EEeCCCEEEEEEccCCcc----ccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001403 405 VAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 480 (1084)
Q Consensus 405 s~~~dg~v~iwd~~~~~~----~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v 480 (1084)
+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+|||+++++.+..+.+|...|
T Consensus 93 SgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V 171 (493)
T PTZ00421 93 TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQI 171 (493)
T ss_pred EEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCce
Confidence 999999999999986532 1234478899999999999998643 79999999999999999999999999999999
Q ss_pred EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCe-EEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCce-
Q 001403 481 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA- 558 (1084)
Q Consensus 481 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~- 558 (1084)
.+++|++ ++.+|++++.||.|++||+++++....+..|... ...+.|.+++..+++++.++..++.|.+||+++..
T Consensus 172 ~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 172 TSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999965 6789999999999999999998887777777653 45678899999988887655557889999998754
Q ss_pred EeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecC
Q 001403 559 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 625 (1084)
Q Consensus 559 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 625 (1084)
.......+. ...+....|+++++.+++++ .|+.|++||+.+++.+....... ...+..++|.|.
T Consensus 250 p~~~~~~d~--~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk 314 (493)
T PTZ00421 250 PYSTVDLDQ--SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPK 314 (493)
T ss_pred ceeEeccCC--CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEeccc
Confidence 333333222 23566678999999999887 59999999999998877765432 234678888884
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-25 Score=216.91 Aligned_cols=274 Identities=16% Similarity=0.186 Sum_probs=228.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC--CCcEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV 461 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~--d~~i~v 461 (1084)
+..-...|.++.|+++|.+|++++.|.+++|||..+|+.++ ++..+...|..++|..... .++.++. |.+|+.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRY 84 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceEE
Confidence 44466899999999999999999999999999999998776 6667777899999988877 4555554 889999
Q ss_pred EECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEee
Q 001403 462 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 462 wd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 541 (1084)
-++.+.+.++-|.||...|.+++.+|-+ ..+++++.|++|++||++..++...+.....+ .++|.|+|-.+|++..
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANG 160 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecC
Confidence 9999999999999999999999997755 68999999999999999987776666555544 4789999999999874
Q ss_pred CCCCCeeEEEecCCCc--eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCc-c
Q 001403 542 SKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN-P 618 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~ 618 (1084)
...|.+||++.- .+...+.-..........+.|+|||+.++.+...+.+++.|.-+|..+..+..+.....+ .
T Consensus 161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 337999999863 344444433222367899999999999999999999999999999999988876543322 4
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccc-cccceeEEEEcCCCce
Q 001403 619 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPISTV 670 (1084)
Q Consensus 619 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~p~~~~ 670 (1084)
..+|+||++++++|+.||+|.+|+++++..+...++ +...+.++.|+|....
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~m 289 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAM 289 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceee
Confidence 678999999999999999999999999999999988 5788888888875443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-25 Score=249.74 Aligned_cols=273 Identities=10% Similarity=0.091 Sum_probs=207.8
Q ss_pred EcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEccCC
Q 001403 342 FHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG 420 (1084)
Q Consensus 342 ~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd-g~~las~~~dg~v~iwd~~~~ 420 (1084)
+..+++++|. .|+..+|... +.+++|+..+... ...+.+|...|.+++|+|+ +.+||+|+.|++|+|||+.++
T Consensus 34 ia~n~~~~A~-~w~~~gGG~~--gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~ 107 (568)
T PTZ00420 34 IACSSGFVAV-PWEVEGGGLI--GAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHN 107 (568)
T ss_pred EeeCCCeEEE-EEEcCCCCce--eEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Confidence 4555667776 5776555543 8999999876432 2347899999999999996 899999999999999999864
Q ss_pred cc-c----cceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEE
Q 001403 421 SD-A----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF 495 (1084)
Q Consensus 421 ~~-~----~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 495 (1084)
.. . .....+.+|...|.+++|+|++.. ++++++.|++|+|||+++++.+..+. |...|.+++|++ +|.+|+
T Consensus 108 ~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLa 183 (568)
T PTZ00420 108 DESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLS 183 (568)
T ss_pred CccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEE
Confidence 32 1 122357799999999999999874 56789999999999999999887776 667899999955 678999
Q ss_pred EEecCCeEEEEECCCCCceEeecCCCCeEE-----EEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-ceEeeeeeccccc
Q 001403 496 SISVDGKIKAWLYDSLGARVDYDAPGLGCT-----RMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQ 569 (1084)
Q Consensus 496 s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~-----~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~ 569 (1084)
+++.|+.|++||++++.....+..|.+.+. ...|++++.++++++.++..++.|++||+++ ++++..+..+. .
T Consensus 184 t~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~ 262 (568)
T PTZ00420 184 GTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-A 262 (568)
T ss_pred EEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-C
Confidence 999999999999999888888888776432 2345689999999887654456899999985 55555543332 1
Q ss_pred cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCC
Q 001403 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 626 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 626 (1084)
.+.+......+++.++++|+.|++|++|++..+. +..+.......++.+++|.|..
T Consensus 263 ~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 263 SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred ccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 2333444445568889999999999999998774 3334333334457789999854
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-26 Score=243.47 Aligned_cols=278 Identities=18% Similarity=0.256 Sum_probs=238.2
Q ss_pred eEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEc
Q 001403 338 MSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAY 417 (1084)
Q Consensus 338 ~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~ 417 (1084)
.-+.|| ....||++. ...|++|+..++..... ...+...|+++.|+++|.+||+|..+|.|.|||.
T Consensus 181 nlldWs-s~n~laVal----------g~~vylW~~~s~~v~~l---~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~ 246 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVAL----------GQSVYLWSASSGSVTEL---CSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDV 246 (484)
T ss_pred hHhhcc-cCCeEEEEe----------cceEEEEecCCCceEEe---EecCCCceEEEEECCCCCEEEEeecCCeEEEEeh
Confidence 346778 455666653 15899999988774332 2224789999999999999999999999999999
Q ss_pred cCCccccceeeeec-ccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE-eccCCCcEEEEeecccCCCcEEE
Q 001403 418 HGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKENIHFIF 495 (1084)
Q Consensus 418 ~~~~~~~~~~~l~~-h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~-~~~h~~~v~~~~~~~~~~~~~l~ 495 (1084)
.+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|+ +|+.+++
T Consensus 247 ~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws--~d~~~lA 317 (484)
T KOG0305|consen 247 KEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS--PDGNQLA 317 (484)
T ss_pred hhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC--CCCCeec
Confidence 9887666 6667 99999999998 34 689999999999999998877655 89999999999994 5778999
Q ss_pred EEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcC-CCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceE
Q 001403 496 SISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVS 574 (1084)
Q Consensus 496 s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~ 574 (1084)
+|+.|+.+.|||.......+.+..|...|.+++|+| ....||+|+. ..|+.|++||..+|+.+...... ..|.
T Consensus 318 SGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdtg----sQVc 391 (484)
T KOG0305|consen 318 SGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDTG----SQVC 391 (484)
T ss_pred cCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEecccccC----Ccee
Confidence 999999999999988899999999999999999999 5567777765 45888999999999998887654 4899
Q ss_pred EEEEcCCCCEEEE--EECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 575 VVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 575 ~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
.+.|++..+.|++ |..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-..
T Consensus 392 sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 392 SLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999988877 55778999999999999999887755 6999999999999999999999999998764
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-26 Score=233.43 Aligned_cols=311 Identities=17% Similarity=0.223 Sum_probs=230.5
Q ss_pred cccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEec
Q 001403 724 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 803 (1084)
Q Consensus 724 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 803 (1084)
+|...|.++++.|.|.++++|+-|..|++||++.-... .+- .... .+.....|.++.||
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas----------~~~--------fr~l---~P~E~h~i~sl~ys 223 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS----------MRS--------FRQL---QPCETHQINSLQYS 223 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEeccccccc----------chh--------hhcc---Ccccccccceeeec
Confidence 47888999999999999999999999999998753210 000 0000 11246679999999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCceeEE------------EEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee
Q 001403 804 KNDAYLFSAS-GGVISLYIVMTFKTIL------------TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 870 (1084)
Q Consensus 804 ~dg~~l~~~s-dg~i~vwd~~~~~~~~------------~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~ 870 (1084)
+.|..|++.+ ....+|+|-...+... .-++|...++|.+|+|.+...+++++.||+++|||+...+.
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 9999888877 5789999976544332 23578889999999998888999999999999999987532
Q ss_pred -eeeec-----ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEE
Q 001403 871 -ISKLE-----GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 944 (1084)
Q Consensus 871 -~~~l~-----~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 944 (1084)
+..++ +..-+++.++|++||+++|.|+.||.|.+|+..+........+ ...|.. ...|++++||+||++|+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v--k~AH~~-g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV--KDAHLP-GQDITSISFSYDGNYLL 380 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEe--eeccCC-CCceeEEEeccccchhh
Confidence 22222 3345789999999999999999999999999865433222222 222321 13699999999999999
Q ss_pred E-EeCCeEEEEEcCCcce-eeEeec-CCCCCEEEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeEEeccccccC
Q 001403 945 L-VHETHLAIYEAEELTC-LKQWFP-ISSVPISQATFSCDCRMVFTSFV------DGTLSIHEASNLEVQCRILSTAYLR 1015 (1084)
Q Consensus 945 ~-~~d~~i~vwd~~~~~~-~~~~~~-~h~~~v~~l~fs~dg~~l~t~~~------dg~i~vwd~~~~~~~~~~~~~~~~~ 1015 (1084)
+ |.|+++++||++..+. +..+.. ....+-+.++||||.++|+||+. -|.+.+||..+.+.+.++...
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~---- 456 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS---- 456 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC----
Confidence 9 8999999999986543 333221 12456788999999999999864 478999999999999887722
Q ss_pred CCCcccceeeeEEEECCCCCCEEEEEeCCCcEEE-EcCCCCCCC---cccCCCCCccc
Q 001403 1016 PTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV-IEPNEPGDT---WAVLPPDEIVG 1069 (1084)
Q Consensus 1016 ~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~v-w~~~~~~~~---~~~~~~~~~~~ 1069 (1084)
......+.|||. =++|.+|+.||+++| ||..++... +.+.||.....
T Consensus 457 ------~aSvv~~~Whpk-LNQi~~gsgdG~~~vyYdp~~S~RGak~cv~k~~rkk~~ 507 (641)
T KOG0772|consen 457 ------TASVVRCLWHPK-LNQIFAGSGDGTAHVYYDPNESIRGAKLCVVKPPRKKHI 507 (641)
T ss_pred ------CceEEEEeecch-hhheeeecCCCceEEEECccccccchhheeecCccccch
Confidence 123456889994 678999999999986 566665432 45555554433
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=210.38 Aligned_cols=255 Identities=16% Similarity=0.242 Sum_probs=215.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
+.+|...|.+|+|+.+|.+||+|+.|+++.+|+++....... ....+|.+.|..++|+|.... .+++++.|.+|++||
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~-~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE-LVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh-hcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence 567999999999999999999999999999999998754433 367799999999999998776 789999999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 464 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
++++++...+....+.+. ++| +++|.+++.++.|..|.+.|.++.+.....+. ...+..++|+.++.+++...
T Consensus 94 ~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~--- 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN--- 166 (313)
T ss_pred eccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec---
Confidence 999999998876666555 456 45778999999999999999887655443322 23567788887777776653
Q ss_pred CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEe
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 623 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 623 (1084)
|.|.|.|.....-+++..++.|. ....++.|+|+|+++++|+.|..+-+||+...-+++.+....- +|..+.|+
T Consensus 167 -GlG~v~ILsypsLkpv~si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS 240 (313)
T KOG1407|consen 167 -GLGCVEILSYPSLKPVQSIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVRTLSFS 240 (313)
T ss_pred -CCceEEEEeccccccccccccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceEEEEec
Confidence 36789999888889999999998 8889999999999999999999999999999888888876654 59999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCCeeeecc
Q 001403 624 KNGTLLAVIANENRIKILETPESNSVDAAG 653 (1084)
Q Consensus 624 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 653 (1084)
.||++||+++.|..|-|=++++|..+..+.
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEEEee
Confidence 999999999999999999988886555443
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.4e-26 Score=248.26 Aligned_cols=277 Identities=14% Similarity=0.198 Sum_probs=212.2
Q ss_pred cccceEEEEEEecCCCeEEEeecCCceEEeeccCCcc------C------------------cCc-ccce---------e
Q 001403 724 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL------T------------------LST-EATT---------K 769 (1084)
Q Consensus 724 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~------~------------------~~~-~~~~---------~ 769 (1084)
.|.+.|.++.||+||++|++++.||.|+||.+...+. . ... +... .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4899999999999999999999999999999866111 0 000 0000 0
Q ss_pred cCCeeecCCCCCcccccc-CcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCC
Q 001403 770 VPPRLYQPRHGPQFMVND-TTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 848 (1084)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~ 848 (1084)
..-.+.+..... +.... ....+|...|..+.||.++-+|-+.-|.+|++|++...++++.|. |...|+|++|+|-|.
T Consensus 345 s~~~~~p~~~f~-f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFV-FSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCcccc-ccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 000011110000 00000 012369999999999998755544449999999999999999998 999999999999999
Q ss_pred cEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCC
Q 001403 849 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 928 (1084)
Q Consensus 849 ~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 928 (1084)
+++++|+-||.||||++...+.+.-..-+ .-|++++|+|||+..+.|+.+|.+++|+....+.....-+....+.....
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999999987776555544 77999999999999999999999999999987766666565555444444
Q ss_pred CCceEEEEccCCC--EEEEEeCCeEEEEEcCCcceeeEeecCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 001403 929 PSETHIQFHKDQT--RFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1003 (1084)
Q Consensus 929 ~~v~~~~~s~dg~--~la~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~ 1003 (1084)
..|+.+.|.|... .|+++.|..|+|||..+...+..+...| ...-....|+.||++|+++++|..|++|+.+...
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 5799999997654 7888999999999998888777755444 2334567899999999999999999999985543
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=232.63 Aligned_cols=285 Identities=18% Similarity=0.246 Sum_probs=239.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|-.++|+++.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 55699999999999999999999999999999998876 233447888889999999999999 788899999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 464 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
+...+...++.||.+.|+++.|.... ..+++|+.|.+|++||+....+..+.- ....+..++.+ ...++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence 99999999999999999999985443 349999999999999998755544332 22344445544 455666655
Q ss_pred CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCC--CCCcceEE
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPRIC 621 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~ 621 (1084)
+..|+.||.++..+......+. .|+++..++++..+++.+.|.++.+.|+++.+....+...+. ....+.+.
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~gg----~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLGG----RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred --ccceEEEeccCCceeeEeecCc----ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 5569999999999988888754 899999999999999999999999999999998888865432 22478899
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccc--eeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceeccc
Q 001403 622 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 699 (1084)
Q Consensus 622 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 699 (1084)
|||++.|+++|+.||.|+||++.++++...+...... |+++.|+ +.|..+++++.+
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~----------------------~sG~~Llsadk~ 452 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN----------------------PSGSGLLSADKQ 452 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc----------------------CCCchhhcccCC
Confidence 9999999999999999999999999888877766555 9999998 457778888888
Q ss_pred Ccccccc
Q 001403 700 NKSEVEK 706 (1084)
Q Consensus 700 ~~i~~w~ 706 (1084)
+.+.+|.
T Consensus 453 ~~v~lW~ 459 (459)
T KOG0288|consen 453 KAVTLWT 459 (459)
T ss_pred cceEecC
Confidence 8888883
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-23 Score=231.55 Aligned_cols=518 Identities=12% Similarity=0.121 Sum_probs=330.2
Q ss_pred EEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCc-EEEEEEeCCCcEEEEECCCCcee
Q 001403 392 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVWDAVTGSRT 470 (1084)
Q Consensus 392 ~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~-l~l~s~~~d~~i~vwd~~~g~~~ 470 (1084)
....||+|++++.....+ .|.||...+|+++. .+.+|..++..+.+.|.... .++++++.||.|++||...+..+
T Consensus 20 ~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL 95 (792)
T ss_pred cccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence 345799999999887655 59999999999887 78899999999999887663 47889999999999999999999
Q ss_pred eEeccCCCcEEEEeecc------------cCCCcEEEEEecC--CeEEEEECCCCCc-eEeecCCCCeEEEEEEcCCCCE
Q 001403 471 YSFEGHGAPVYSLCPHA------------KENIHFIFSISVD--GKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRR 535 (1084)
Q Consensus 471 ~~~~~h~~~v~~~~~~~------------~~~~~~l~s~s~d--g~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~ 535 (1084)
.++..+.. +.++.+.+ ..+-..+.+.+.+ +.++-+.+.+... ...+......-.++.+++.|.+
T Consensus 96 kt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 96 KTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 88864432 33322211 1111111111111 1111111111100 0000001111356788888888
Q ss_pred EEEEeeCCCCCeeEEEecCCCceEe-eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC--CeEEEEEcCCC
Q 001403 536 LFSCGTSKEGESFLVEWNESEGAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLLTTIDAGG 612 (1084)
Q Consensus 536 l~~~~~~~~~~~~i~~wd~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~ 612 (1084)
.+.+. +..+.+|+..++... .....+..|...+++.+++|+++++++|..||.|.+|.--. +........|-
T Consensus 175 ~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 175 KGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred EEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 87776 445889988775411 11111222335589999999999999999999999996433 22222222223
Q ss_pred CCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCc
Q 001403 613 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 692 (1084)
Q Consensus 613 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~ 692 (1084)
+...|.+++|+++|.+|.+|+..+.+.+|.+.+++.. -+..
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq-fLPR-------------------------------------- 290 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ-FLPR-------------------------------------- 290 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCCcc-cccc--------------------------------------
Confidence 3346999999999999999999999999999987521 1110
Q ss_pred cceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCC
Q 001403 693 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP 772 (1084)
Q Consensus 693 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 772 (1084)
-.+.|..+.+|||+........|+.|.+-....-.... .+
T Consensus 291 --------------------------------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~--------tI 330 (792)
T KOG1963|consen 291 --------------------------------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS--------TI 330 (792)
T ss_pred --------------------------------cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh--------hc
Confidence 23567888888999888888888888876654321100 00
Q ss_pred eeecCCCCCccccccCcCCCCCCCccEEEecCC-CCEEEEEeCCeEEEEEcCCceeEEEEcC-----C------CCCeEE
Q 001403 773 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSASGGVISLYIVMTFKTILTIMP-----P------SPTATS 840 (1084)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~l~~~sdg~i~vwd~~~~~~~~~~~~-----~------~~~i~~ 840 (1084)
.-..+.+.. . .....+-.+.++++|- +..+..+-.|.|++||+.+.+.+..+.. + .-.+++
T Consensus 331 sgi~~~~~~------~-k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~ita 403 (792)
T KOG1963|consen 331 SGIKPPTPS------T-KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITA 403 (792)
T ss_pred cCccCCCcc------c-cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeee
Confidence 000000000 0 0013455677888884 4444444479999999987766654421 1 235788
Q ss_pred EEEcCCCCcEEEEEe--------CCC--eEEEEEcCCceee-----eeecccccCEEEEEEcCC-C-CEEEEEeCCCcEE
Q 001403 841 LAFNPHDNNVIAIGM--------DDS--TILIYNARSSEVI-----SKLEGHSKRVTGLVFSDA-L-NILVSSGGDAQIF 903 (1084)
Q Consensus 841 l~~s~~d~~~la~g~--------~dg--~i~iwd~~~~~~~-----~~l~~h~~~V~~l~~spd-~-~~l~s~s~dg~I~ 903 (1084)
++.+- .|.+++|+- .|| .+++|-......- .....|...+...+|.+. . ..+++++.||.++
T Consensus 404 v~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~K 482 (792)
T KOG1963|consen 404 VARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFK 482 (792)
T ss_pred ehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEE
Confidence 88888 699999863 233 6788977654322 222358877777666642 2 3799999999999
Q ss_pred EEeCCCCceee-----eeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEE
Q 001403 904 VWDVDGWGIQT-----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATF 978 (1084)
Q Consensus 904 iwd~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~f 978 (1084)
||-+...+... ..+.....-|.. .++.++||.||..|+++.+++|.+||..+...+.........++..++|
T Consensus 483 iW~~~~~~n~~k~~s~W~c~~i~sy~k~---~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~ 559 (792)
T KOG1963|consen 483 IWVFTDDSNIYKKSSNWTCKAIGSYHKT---PITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLF 559 (792)
T ss_pred EEEEecccccCcCccceEEeeeeccccC---cccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccccchHhHhh
Confidence 99995432111 112222212332 7899999999999999999999999998843332223333455555555
Q ss_pred ccCC--CEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 979 SCDC--RMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 979 s~dg--~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
.... ...+.....+...+||+.+..+...+.
T Consensus 560 ~~~~~~~~~~~~~~~~~l~~WNll~~~l~w~~s 592 (792)
T KOG1963|consen 560 TAQTQNDGALVHATQQRLSVWNLLSMSLIWNLS 592 (792)
T ss_pred hcccccccceeeccCceEehHhhhhhheecchh
Confidence 4421 122333467899999999998876433
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.4e-25 Score=245.99 Aligned_cols=270 Identities=17% Similarity=0.198 Sum_probs=210.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccc----------cceeeeecccccEeEEEeec-CCCcEEEEEEeC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA----------RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGD 455 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~----------~~~~~l~~h~~~V~~l~~s~-d~~~l~l~s~~~ 455 (1084)
|-..|.....++|+..+++++.+..+..|+...+..+ .....+.+|.+.|.+++|+| ++. +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 3456666777888777777777777777776544321 11224779999999999999 777 8999999
Q ss_pred CCcEEEEECCCC-------ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEE
Q 001403 456 DKTIKVWDAVTG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 528 (1084)
Q Consensus 456 d~~i~vwd~~~g-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 528 (1084)
|++|++||+.++ ..+..+.+|...|.+++|+|.. +.+|++++.|++|++||+.++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 3567889999999999998753 36899999999999999999888888888889999999
Q ss_pred EcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE----CCCcEEEEECCCCe-
Q 001403 529 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ- 603 (1084)
Q Consensus 529 ~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~- 603 (1084)
|+|+|.+|++++. ++.|++||+++++.+..+.+|. ......+.|.+++..+++++ .|+.|++||+++..
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999999999986 7779999999999998888876 23345678999888888754 47999999998754
Q ss_pred EEEEEcCCCCCCCcceEEEecCCCEEEEEE-CCCeEEEEEcCCCCeeeeccc-cccceeEEEEcC
Q 001403 604 LLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGV-LSDNLRKLSVNP 666 (1084)
Q Consensus 604 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~p 666 (1084)
.+.....+. ...+....|+++++++++++ .|+.|++||+.+++.+..... ....+..+++.|
T Consensus 250 p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 250 PYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred ceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 333333322 22355667899999999887 499999999998876655433 233455555554
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-25 Score=213.95 Aligned_cols=207 Identities=17% Similarity=0.229 Sum_probs=166.9
Q ss_pred CCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC---c
Q 001403 793 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---S 868 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~---~ 868 (1084)
|.-.+..+-...++++|++++ |..|.+|++. |+.+..+......-+..+.|| +|++||+++---.|++|..-- |
T Consensus 186 h~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG 263 (420)
T KOG2096|consen 186 HQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDG 263 (420)
T ss_pred cccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCc
Confidence 555666677777889999998 7889999998 899988887777778899999 999999999999999998732 2
Q ss_pred -----eeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee--eeeeeecCCC-CccCCCCceEEEEccCC
Q 001403 869 -----EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ--TCRSLQTPDG-VMTLAPSETHIQFHKDQ 940 (1084)
Q Consensus 869 -----~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~--~~~~~~~~~~-~~~~~~~v~~~~~s~dg 940 (1084)
..+..|+||...|..++|||+...++|.+.||+++|||++-.... ..+.++.... .....+....++.||.|
T Consensus 264 ~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g 343 (420)
T KOG2096|consen 264 TFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG 343 (420)
T ss_pred chhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC
Confidence 235678999999999999999999999999999999998752211 1122222210 01111344589999999
Q ss_pred CEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001403 941 TRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 941 ~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
+.||++....+.++..++|+....+...|...|+++.|++||++++|++ |..+++..-..|
T Consensus 344 ~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 344 DSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred cEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 9999999999999999999988888888999999999999999999986 788888764443
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-25 Score=213.11 Aligned_cols=240 Identities=19% Similarity=0.277 Sum_probs=204.8
Q ss_pred CCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCc--EEEEEeCCCeEEEEEcCCc
Q 001403 792 NSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARSS 868 (1084)
Q Consensus 792 ~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~la~g~~dg~i~iwd~~~~ 868 (1084)
.|...++++|+ +|.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ .-. .|.+|+.||.|.+|+....
T Consensus 41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred ccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCe
Confidence 59999999999 789999998 89999999999999999999999999999998 543 8899999999999999999
Q ss_pred eeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeC
Q 001403 869 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 948 (1084)
Q Consensus 869 ~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d 948 (1084)
+++..+++|.+.|+.++.+|.+++-++.+.|+.++.||+-.|+......+.. ..+.+.|+|.|.+++++..
T Consensus 118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEEec
Confidence 9999999999999999999999999999999999999999877433222222 2346999999999999999
Q ss_pred CeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEE
Q 001403 949 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAI 1028 (1084)
Q Consensus 949 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1028 (1084)
+.|-+|.+.+......... ..++.++.|. ++.+|++|+.|+.|++||.+++...+.+.. |..+|..+..
T Consensus 189 ~~i~i~q~d~A~v~~~i~~--~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A--------H~~RVK~i~~ 257 (362)
T KOG0294|consen 189 NKIDIYQLDNASVFREIEN--PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLA--------HENRVKDIAS 257 (362)
T ss_pred cEEEEEecccHhHhhhhhc--cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeec--------chhheeeeEE
Confidence 9999999988776665433 3557777775 566899999999999999999888877772 5666776655
Q ss_pred EECCCCCCEEEEEeCCCcEEEEcCCCC
Q 001403 1029 AAHPLKPTQFAVGLTNGEVYVIEPNEP 1055 (1084)
Q Consensus 1029 ~~~p~d~~~l~~~~~dg~v~vw~~~~~ 1055 (1084)
--.| ++.+|+++++||.|+|||+...
T Consensus 258 ~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 258 YTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EecC-CceEEEEeccCceEEEEEcccc
Confidence 4555 5789999999999999999776
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-24 Score=196.37 Aligned_cols=303 Identities=14% Similarity=0.142 Sum_probs=224.9
Q ss_pred ccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC
Q 001403 725 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 804 (1084)
Q Consensus 725 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 804 (1084)
....|.+++|.|.|...++++...+.++-.++.-.....+......++.+.- -....|.+.|.|.+|||
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~-----------kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLC-----------KRNKHHKGSIYCTAWSP 99 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEe-----------eeccccCccEEEEEecC
Confidence 4568999999999999999999999998776532111111111111111110 11124899999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCcee-----EEEEcCCCCCeEEEEEcCC---CCcEEEEEe-CCCeEEEEEcCCceeeeee
Q 001403 805 NDAYLFSAS-GGVISLYIVMTFKT-----ILTIMPPSPTATSLAFNPH---DNNVIAIGM-DDSTILIYNARSSEVISKL 874 (1084)
Q Consensus 805 dg~~l~~~s-dg~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~s~~---d~~~la~g~-~dg~i~iwd~~~~~~~~~l 874 (1084)
+|++|++|+ |.+|++..++...+ -..+.-|.+.|..++|-.+ ++.+|++++ .|..|++-|..+|+....+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 999999999 68888877653322 2346668899999999642 456777765 5678999999999999999
Q ss_pred cccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCC----ccCCCCceEEEEccCCCEEEEE-eCC
Q 001403 875 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV----MTLAPSETHIQFHKDQTRFLLV-HET 949 (1084)
Q Consensus 875 ~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~dg~~la~~-~d~ 949 (1084)
.||.+.|.++ ++-+|-++++|+.|.+|++||+.-..+ +...... -..+..|.+++..|.|++|++| .|.
T Consensus 180 sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~-----v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds 253 (350)
T KOG0641|consen 180 SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSC-----VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS 253 (350)
T ss_pred cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccce-----eeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence 9999999886 344689999999999999999987443 3322211 1112479999999999999997 778
Q ss_pred eEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEE
Q 001403 950 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1029 (1084)
Q Consensus 950 ~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1029 (1084)
...+||++.++.+..+ -.|+..|.++.|||...||++++.|..|++=|+... +...+... ... .|.+ ..+.+.
T Consensus 254 sc~lydirg~r~iq~f-~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~~-vv~--ehkd--k~i~~r 326 (350)
T KOG0641|consen 254 SCMLYDIRGGRMIQRF-HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPIM-VVA--EHKD--KAIQCR 326 (350)
T ss_pred ceEEEEeeCCceeeee-CCCccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCceE-EEE--eccC--ceEEEE
Confidence 8999999999998884 479999999999999999999999999999999853 22222111 111 1222 345688
Q ss_pred ECCCCCCEEEEEeCCCcEEEEcC
Q 001403 1030 AHPLKPTQFAVGLTNGEVYVIEP 1052 (1084)
Q Consensus 1030 ~~p~d~~~l~~~~~dg~v~vw~~ 1052 (1084)
|+|+| --+++.+.|.++.+|.+
T Consensus 327 wh~~d-~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 327 WHPQD-FSFISSSADKTATLWAL 348 (350)
T ss_pred ecCcc-ceeeeccCcceEEEecc
Confidence 99974 77889999999999976
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-26 Score=240.41 Aligned_cols=242 Identities=21% Similarity=0.255 Sum_probs=207.9
Q ss_pred EEEEc-CCCCEEEEEeCCCEEEEEEccCCccc---cceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-
Q 001403 393 RVVWS-PDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG- 467 (1084)
Q Consensus 393 ~v~fs-pdg~~las~~~dg~v~iwd~~~~~~~---~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g- 467 (1084)
.+..+ |.++||.+|+.||.|++|++...... .....+..|.+.|+.++...+++ .|+++|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 44444 47788999999999999998754321 11336789999999999999998 7999999999999999887
Q ss_pred -ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc--eE--------eec-CCCCeEEEEEEcCCCCE
Q 001403 468 -SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RV--------DYD-APGLGCTRMAYSANGRR 535 (1084)
Q Consensus 468 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~--------~~~-~~~~~i~~~~~s~d~~~ 535 (1084)
-++.++..|.+.|.++++. ..+...+++|+.|+.|.+||++++.. .. .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 6788899999999999984 23557999999999999999997633 11 122 56668999999999999
Q ss_pred EEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCC
Q 001403 536 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 615 (1084)
Q Consensus 536 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 615 (1084)
+++|+. ++.+++||.++++.+..+.||. ..|..+..++||+.+++++.||+|++||+...+++.++..|..
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-- 256 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-- 256 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeeccc---cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--
Confidence 999887 4459999999999999999999 9999999999999999999999999999999999999988766
Q ss_pred CcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 616 ENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 616 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
.|.++..+|+-..+++|+.||.|..=|+.+.
T Consensus 257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 4899999999999999999999998888764
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=250.26 Aligned_cols=279 Identities=17% Similarity=0.241 Sum_probs=242.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
+...+.+..|. +.++++++.+++|++||..++..+.. .+.||.+.|.+++|..-+. .+++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence 56788899998 67899999999999999999876552 3889999999999987555 899999999999999999
Q ss_pred CceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001403 467 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 546 (1084)
Q Consensus 467 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 546 (1084)
|.+.+.+.+|...|.++.. ....+++|+.|.+|++|+++++.....+.+|..+|.++..+ +.++++++. +
T Consensus 281 g~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d 350 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D 350 (537)
T ss_pred CcEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence 9999999999999999976 33588999999999999999999999999899999999988 889999886 6
Q ss_pred eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC-eEEEEEcCCCCCCCcceEEEecC
Q 001403 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKN 625 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~ 625 (1084)
+.|.+||+.+++++..+.+|. ..|.++.+.+. ..+++|+.|++|++||+.++ +++.++..+... +..+ ...
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--v~~l--~~~ 422 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--VSSL--LLR 422 (537)
T ss_pred ceEEEEEhhhceeeeeecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc--cccc--ccc
Confidence 679999999999999999998 99999988765 89999999999999999999 899999877653 4333 345
Q ss_pred CCEEEEEECCCeEEEEEcCCCCeeeeccc-cccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcccc
Q 001403 626 GTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 704 (1084)
Q Consensus 626 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~ 704 (1084)
+++|++++.|++|++||..++++++.+.+ +...+..+... ...+++++.++++++
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~------------------------~~~il~s~~~~~~~l 478 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG------------------------KEEILCSSDDGSVKL 478 (537)
T ss_pred cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC------------------------cceEEEEecCCeeEE
Confidence 88999999999999999999999999988 55666655443 345788999999999
Q ss_pred ccceeecCc
Q 001403 705 EKPLFARPS 713 (1084)
Q Consensus 705 w~~~~~~~~ 713 (1084)
||+......
T Consensus 479 ~dl~~~~~~ 487 (537)
T KOG0274|consen 479 WDLRSGTLI 487 (537)
T ss_pred EecccCchh
Confidence 998755443
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-25 Score=225.71 Aligned_cols=281 Identities=14% Similarity=0.180 Sum_probs=228.7
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccc---cee-----------eee-cCCCCCeE
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSML---FKT-----------ALV-RDPGVSVN 392 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~---~~~-----------~~~-~~h~~~V~ 392 (1084)
+.+..|.-.|.+|+++||+++..+++.| ++|.=|++.++... .+. ..- .+|...|.
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~---------g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil 206 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKD---------GTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEIL 206 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCC---------cceeeeehhcCcccccccccchhhhhccCCCCcccccccceeE
Confidence 4567788899999999999999999888 88888998765532 111 011 37899999
Q ss_pred EEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001403 393 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 472 (1084)
Q Consensus 393 ~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~ 472 (1084)
+++.|+||+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++.-..+.+
T Consensus 207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vet 281 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVET 281 (479)
T ss_pred EEEEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHH
Confidence 99999999999999999999999999998776 6889999999999987666 689999999999999999999999
Q ss_pred eccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEe
Q 001403 473 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 552 (1084)
Q Consensus 473 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~w 552 (1084)
+-+|.+.|.++.... -...+.+|+.|+++++|++ .......+.++...+.|++|-.+. .+++|+. +|.|.+|
T Consensus 282 lyGHqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~-HfvsGSd----nG~IaLW 353 (479)
T KOG0299|consen 282 LYGHQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDE-HFVSGSD----NGSIALW 353 (479)
T ss_pred HhCCccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEeccc-ceeeccC----CceEEEe
Confidence 999999999997643 3355566669999999999 445566777888899999997654 5666664 7779999
Q ss_pred cCCCceEeeeeeccc-cc--------cCceEEEEEcCCCCEEEEEECCCcEEEEECCCC----eEEEEEcCCCCCCCcce
Q 001403 553 NESEGAIKRTYQGLQ-LQ--------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENPR 619 (1084)
Q Consensus 553 d~~~~~~~~~~~~~~-~~--------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~ 619 (1084)
++...+++.+....+ .. ...|++++..|....+++|+.+|.|++|-+..+ +++..+... ..|++
T Consensus 354 s~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNs 430 (479)
T KOG0299|consen 354 SLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNS 430 (479)
T ss_pred eecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEE
Confidence 999998887765322 11 127899999999999999999999999998877 444555433 34899
Q ss_pred EEEecCCCEEEEEE
Q 001403 620 ICFNKNGTLLAVIA 633 (1084)
Q Consensus 620 v~~s~~~~~l~~~~ 633 (1084)
++|+++|+.+++|.
T Consensus 431 l~f~~sgk~ivagi 444 (479)
T KOG0299|consen 431 LAFSNSGKRIVAGI 444 (479)
T ss_pred EEEccCCCEEEEec
Confidence 99999999766653
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=210.85 Aligned_cols=270 Identities=20% Similarity=0.313 Sum_probs=219.0
Q ss_pred CCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEE
Q 001403 334 SSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 413 (1084)
Q Consensus 334 ~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~ 413 (1084)
.+.|+.|.|+|.+..|++++|| |++++||+.......... |..++.+++|.+ ...+++|+.||.|+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWD---------gslrlYdv~~~~l~~~~~----~~~plL~c~F~d-~~~~~~G~~dg~vr 78 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWD---------GSLRLYDVPANSLKLKFK----HGAPLLDCAFAD-ESTIVTGGLDGQVR 78 (323)
T ss_pred hhceeeEEEcCcCCcEEEEecc---------CcEEEEeccchhhhhhee----cCCceeeeeccC-CceEEEeccCceEE
Confidence 5689999999999999999999 999999998875544432 889999999998 45788999999999
Q ss_pred EEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcE
Q 001403 414 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 493 (1084)
Q Consensus 414 iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~ 493 (1084)
.+|++++... .+..|..+|.|+.+++-.. .+++||.|++|++||.+.......+. ....|.++.. .++.
T Consensus 79 ~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v----~g~~ 147 (323)
T KOG1036|consen 79 RYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV----SGNR 147 (323)
T ss_pred EEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec----cCCE
Confidence 9999998654 4778999999999998766 79999999999999998766555554 3447888866 4568
Q ss_pred EEEEecCCeEEEEECCCCCceEeecCC--CCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc----eEeeeeeccc
Q 001403 494 IFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG----AIKRTYQGLQ 567 (1084)
Q Consensus 494 l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~----~~~~~~~~~~ 567 (1084)
|+.|..|..|.+||+++.......... .-.+.++++.|++.-.++++- +|+|.+=.++.. +....|+.|.
T Consensus 148 LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~skkyaFkCHr 223 (323)
T KOG1036|consen 148 LVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQSKKYAFKCHR 223 (323)
T ss_pred EEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhhhceeEEeee
Confidence 999999999999999987765533222 337899999998888888776 444555444333 4445666665
Q ss_pred cc------cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEEC
Q 001403 568 LQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 634 (1084)
Q Consensus 568 ~~------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 634 (1084)
.. ..+|++++|+|-...|++|+.||.|.+||..+.+.+..+... ...|.+++|+.+|..||+++.
T Consensus 224 ~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 224 LSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence 22 257899999999999999999999999999999888888654 235899999999999999876
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=236.04 Aligned_cols=284 Identities=19% Similarity=0.231 Sum_probs=234.0
Q ss_pred EEEEc-CCCceeeeecccccCccccccceEEEEEcCCccccce---eeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEE
Q 001403 339 SMDFH-PVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFK---TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL 414 (1084)
Q Consensus 339 ~v~~s-pdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~---~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~i 414 (1084)
++..+ |.++||.+|+.| |.|++|++........ ...++.|.++|..++...+|+.|++++.|-+|++
T Consensus 29 ~Lq~da~~~ryLfTgGRD---------g~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRD---------GIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred hccccCCCCceEEecCCC---------ceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 33443 567889999888 9999999975443211 1236779999999999999999999999999999
Q ss_pred EEccCCccccceeeeecccccEeEEEe-ecCCCcEEEEEEeCCCcEEEEECCCCc--eeeE--------ec-cCCCcEEE
Q 001403 415 YAYHGGSDARQQLEIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTGS--RTYS--------FE-GHGAPVYS 482 (1084)
Q Consensus 415 wd~~~~~~~~~~~~l~~h~~~V~~l~~-s~d~~~l~l~s~~~d~~i~vwd~~~g~--~~~~--------~~-~h~~~v~~ 482 (1084)
|+...+. .....+++.|.+.|.|+++ .++.. ++|+||-|+.|.+||+.+|. .+.+ +. |+..+|++
T Consensus 100 W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS 176 (735)
T KOG0308|consen 100 WNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS 176 (735)
T ss_pred eecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence 9998774 1223378899999999999 66666 89999999999999999883 3322 23 78899999
Q ss_pred EeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee
Q 001403 483 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 483 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 562 (1084)
++. ++.|..+++|+.++.+++||.++.+....+.+|...|..+..++||+.+++++. +++|++||+...+++.+
T Consensus 177 LA~--N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtIrlWdLgqQrCl~T 250 (735)
T KOG0308|consen 177 LAM--NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTIRLWDLGQQRCLAT 250 (735)
T ss_pred eec--CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceEEeeeccccceeee
Confidence 998 446689999999999999999999999999999999999999999999999986 77899999999999999
Q ss_pred eeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEE
Q 001403 563 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 563 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
+..|. ..|+++..+|+-.++++|+.||.|+.=|+++......+-...+ +|..+..+...+-+-+++.|+.|+-|.
T Consensus 251 ~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~da--Pv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 251 YIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDA--PVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred EEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCC--chhhhhhccccCCceeeeccccceecC
Confidence 99988 7799999999999999999999999999988533333322222 366777776555567788899999997
Q ss_pred cCC
Q 001403 643 TPE 645 (1084)
Q Consensus 643 ~~~ 645 (1084)
..-
T Consensus 326 ~~~ 328 (735)
T KOG0308|consen 326 LEP 328 (735)
T ss_pred Ccc
Confidence 663
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-25 Score=222.47 Aligned_cols=250 Identities=22% Similarity=0.288 Sum_probs=212.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccc--------------eeee-ecccccEeEEEeecCCCcE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ--------------QLEI-DAHVGNVNDLAFSAPCKQI 448 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~--------------~~~l-~~h~~~V~~l~~s~d~~~l 448 (1084)
...|.-+|.+|+++||+++..+++.+++|.=|++.+|...+. ...- ++|...+.+++.|+||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 456999999999999999999999999999999998874311 1111 37888999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEE
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 528 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 528 (1084)
+|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|.- ....+++++.|+.|++|+++.....-++-+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK--GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeec--CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 899999999999999999999999999999999999953 446899999999999999998888888999999999999
Q ss_pred EcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 001403 529 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 608 (1084)
Q Consensus 529 ~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 608 (1084)
...-++.+-+++. |.++++|++.. +....+.++. +.+.|++|-. ..++++|+.+|.|.+|++.+.+++.+.
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~---~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGE---GSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCC---CCeeeEEEec-ccceeeccCCceEEEeeecccCceeEe
Confidence 8888888777765 77799999943 3444666666 7899999965 468999999999999999999888776
Q ss_pred cCCCCC----------CCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 609 DAGGGL----------PENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 609 ~~~~~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
....+. ..|++++..|...++++|+.+|.|++|-+..+
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 432111 15778999999999999999999999998876
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=210.26 Aligned_cols=274 Identities=16% Similarity=0.167 Sum_probs=216.7
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 385 RDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 385 ~~h~~~V~~v~fsp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
...++.|.+++||| ...++++++-|++|++|+++....+.. .....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 34678999999999 556666889999999999987322222 24568999999999999998 799999999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 464 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
+.+++ +..+..|.++|.++.|.+...-..|+|||.|++|+.||.+...+...+..++ .++++.. -..+++++..
T Consensus 101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata-- 174 (347)
T KOG0647|consen 101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA-- 174 (347)
T ss_pred ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec--
Confidence 99995 5677889999999999877766799999999999999999888877776655 3444433 2345555544
Q ss_pred CCCeeEEEecCCCceEe-eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC--eEEEEEcCCCC-------
Q 001403 544 EGESFLVEWNESEGAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGG------- 613 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~------- 613 (1084)
+..|.+|+++++... ......- ...+++++..+|....+.|+-+|.+-|..+..+ +.-..+..|..
T Consensus 175 --~r~i~vynL~n~~te~k~~~SpL--k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~ 250 (347)
T KOG0647|consen 175 --ERHIAVYNLENPPTEFKRIESPL--KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDD 250 (347)
T ss_pred --CCcEEEEEcCCCcchhhhhcCcc--cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCc
Confidence 555999999765432 2222221 356899999999888899999999999998876 33334444432
Q ss_pred CCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCcee
Q 001403 614 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 671 (1084)
Q Consensus 614 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 671 (1084)
.-.|++++|+|....|++++.||++.+||......+.....+..+|+++.|+..+.+.
T Consensus 251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~if 308 (347)
T KOG0647|consen 251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIF 308 (347)
T ss_pred eEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEE
Confidence 2357889999999999999999999999999888888889999999999999776655
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-25 Score=207.05 Aligned_cols=200 Identities=18% Similarity=0.225 Sum_probs=164.8
Q ss_pred CCCCccEEEecCCC-CEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee
Q 001403 793 SQEAVPCFALSKND-AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 870 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg-~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~ 870 (1084)
|...|.++.+++-. +.+++++ |++|++|+...++.++++.+|...|...+|+|....++++++.|+++++||++..-.
T Consensus 103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk 182 (311)
T KOG0277|consen 103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK 182 (311)
T ss_pred hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc
Confidence 45555555555533 3344445 899999999999999999999999999999998899999999999999999987433
Q ss_pred eeeecccccCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCE-EEE-Ee
Q 001403 871 ISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR-FLL-VH 947 (1084)
Q Consensus 871 ~~~l~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~-la~-~~ 947 (1084)
...+..|..+|.++.|+. +...|+||+.|+.|++||+..-+ ..+..+.+|.- .|..++|||...- ||+ +.
T Consensus 183 ~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----~pl~eL~gh~~---AVRkvk~Sph~~~lLaSasY 255 (311)
T KOG0277|consen 183 FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----TPLFELNGHGL---AVRKVKFSPHHASLLASASY 255 (311)
T ss_pred eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc----ccceeecCCce---EEEEEecCcchhhHhhhccc
Confidence 344889999999999996 77899999999999999999743 23455567765 8999999998654 455 58
Q ss_pred CCeEEEEEcCCcceeeEeecCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEc
Q 001403 948 ETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEA 999 (1084)
Q Consensus 948 d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~i~vwd~ 999 (1084)
|-+++|||...+.........|+.-+..+.||+ ++.++|+++.|+.+.||+-
T Consensus 256 DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 256 DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 899999999977766666777899999999998 7889999999999999984
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=230.96 Aligned_cols=284 Identities=19% Similarity=0.296 Sum_probs=238.8
Q ss_pred ceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEE-EEEcC-CCCE
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR-VVWSP-DGSL 402 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~-v~fsp-dg~~ 402 (1084)
...+.|.+|...|..+++.++. .+++++.| +++++|+-......-. ..+.+|.+.|.+ ++|-+ |+-.
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd---------~t~~vw~~~~~~~l~~-~~~~~~~g~i~~~i~y~e~~~~~ 73 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRD---------GTVKVWAKKGKQYLET-HAFEGPKGFIANSICYAESDKGR 73 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCC---------CceeeeeccCcccccc-eecccCcceeeccceeccccCcc
Confidence 3567899999999999977766 67777777 9999999865444332 336778888887 88886 6667
Q ss_pred EEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEE
Q 001403 403 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~ 482 (1084)
|++|+.|++|.+|...+...+. .+.+|+..|.+++...++. ++|||.|.++++|- .+++...+.+|...|++
T Consensus 74 l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQGHTASVWA 145 (745)
T ss_pred eEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccCCcchheee
Confidence 9999999999999999987666 7899999999999877775 89999999999995 57777889999999999
Q ss_pred EeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee
Q 001403 483 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 483 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 562 (1084)
++..+.. .++|||.|++|++| ..++...++.+|..-|+.+++-+++.++ +|+. ++.|++|++ +|+.+..
T Consensus 146 v~~l~e~---~~vTgsaDKtIklW--k~~~~l~tf~gHtD~VRgL~vl~~~~fl-ScsN----Dg~Ir~w~~-~ge~l~~ 214 (745)
T KOG0301|consen 146 VASLPEN---TYVTGSADKTIKLW--KGGTLLKTFSGHTDCVRGLAVLDDSHFL-SCSN----DGSIRLWDL-DGEVLLE 214 (745)
T ss_pred eeecCCC---cEEeccCcceeeec--cCCchhhhhccchhheeeeEEecCCCeE-eecC----CceEEEEec-cCceeee
Confidence 9886543 89999999999999 4467888899999999999998887655 5554 778999998 7999999
Q ss_pred eeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEE
Q 001403 563 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 563 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
+.+|. .-+.++...+++..++++++|++++||+.. ++.+.+..++. .+.++.+-++|. +++|+.||.||||.
T Consensus 215 ~~ght---n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 215 MHGHT---NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred eeccc---eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 99999 889999988888999999999999999976 78888876653 488888888885 77788899999998
Q ss_pred cCCC
Q 001403 643 TPES 646 (1084)
Q Consensus 643 ~~~~ 646 (1084)
....
T Consensus 287 ~~k~ 290 (745)
T KOG0301|consen 287 VDKD 290 (745)
T ss_pred eccc
Confidence 7744
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=234.40 Aligned_cols=274 Identities=20% Similarity=0.248 Sum_probs=237.2
Q ss_pred EEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001403 393 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 472 (1084)
Q Consensus 393 ~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~ 472 (1084)
-+.|| ....||+|... .|.+|+..+++... ....+...|+++.|+++|. +|+.|..+|.|.|||..+.+.+.+
T Consensus 182 lldWs-s~n~laValg~-~vylW~~~s~~v~~---l~~~~~~~vtSv~ws~~G~--~LavG~~~g~v~iwD~~~~k~~~~ 254 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALGQ-SVYLWSASSGSVTE---LCSFGEELVTSVKWSPDGS--HLAVGTSDGTVQIWDVKEQKKTRT 254 (484)
T ss_pred Hhhcc-cCCeEEEEecc-eEEEEecCCCceEE---eEecCCCceEEEEECCCCC--EEEEeecCCeEEEEehhhcccccc
Confidence 46788 45567776544 49999999987433 2223378999999999999 899999999999999999999999
Q ss_pred ecc-CCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEe-ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEE
Q 001403 473 FEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 550 (1084)
Q Consensus 473 ~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 550 (1084)
+.+ |...|.+++|. +..+.+|+.||.|..+|++..+.... +..|...|..+.|++|++++|+++. |+.+.
T Consensus 255 ~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn----DN~~~ 326 (484)
T KOG0305|consen 255 LRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN----DNVVF 326 (484)
T ss_pred ccCCcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC----ccceE
Confidence 998 99999999994 46899999999999999998877665 8889999999999999999999987 77799
Q ss_pred EecCCCceEeeeeeccccccCceEEEEEcCCC-CEEEEE--ECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC
Q 001403 551 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 627 (1084)
Q Consensus 551 ~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 627 (1084)
|||....++...+..|. ..|.+++|+|-. ..||+| +.|+.|++||..+|..+..+.... .|.++.|++..+
T Consensus 327 Iwd~~~~~p~~~~~~H~---aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs---QVcsL~Wsk~~k 400 (484)
T KOG0305|consen 327 IWDGLSPEPKFTFTEHT---AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS---QVCSLIWSKKYK 400 (484)
T ss_pred eccCCCccccEEEeccc---eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC---ceeeEEEcCCCC
Confidence 99998889999999998 999999999974 566664 489999999999999999987554 489999999887
Q ss_pred EEEEE--ECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccc
Q 001403 628 LLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVE 705 (1084)
Q Consensus 628 ~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w 705 (1084)
-++++ ..++.|.||+..+.+.+..+.+|..+|..++++ |||..+++++.|.++++|
T Consensus 401 Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~S----------------------Pdg~~i~t~a~DETlrfw 458 (484)
T KOG0305|consen 401 ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALS----------------------PDGETIVTGAADETLRFW 458 (484)
T ss_pred EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEEC----------------------CCCCEEEEecccCcEEec
Confidence 66654 457899999999999999999999999999997 678899999999999999
Q ss_pred ccee
Q 001403 706 KPLF 709 (1084)
Q Consensus 706 ~~~~ 709 (1084)
++-.
T Consensus 459 ~~f~ 462 (484)
T KOG0305|consen 459 NLFD 462 (484)
T ss_pred cccC
Confidence 9753
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-24 Score=207.81 Aligned_cols=251 Identities=21% Similarity=0.330 Sum_probs=186.3
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCcc-----ccceeeeecccccEeEEEeecCCCcEEEEEEeCCC
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 457 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~-----~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~ 457 (1084)
.++||...|++++||.||++||+++.|++|+||++..-.. ++...++ +--+.++|+||-+. +++++-...
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~----dhpT~V~FapDc~s-~vv~~~~g~ 155 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY----DHPTRVVFAPDCKS-VVVSVKRGN 155 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC----CCceEEEECCCcce-EEEEEccCC
Confidence 3889999999999999999999999999999999986321 2221111 23578899999986 566666677
Q ss_pred cEEEEECCC---CceeeE--------e-ccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEE
Q 001403 458 TIKVWDAVT---GSRTYS--------F-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCT 525 (1084)
Q Consensus 458 ~i~vwd~~~---g~~~~~--------~-~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~ 525 (1084)
++++|.+.. |..... | +.|...+..+.. .+++.+|++++.|..|.+|++. ++.+..+......-+
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~ 232 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNY 232 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeecccccccc
Confidence 899997642 222111 1 235566666665 5577899999999999999998 666667766666777
Q ss_pred EEEEcCCCCEEEEEeeCCCCCeeEEEecCC---Cc-----eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEE
Q 001403 526 RMAYSANGRRLFSCGTSKEGESFLVEWNES---EG-----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 597 (1084)
Q Consensus 526 ~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~---~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 597 (1084)
..+.||+|+++++++...+ |.+|.+- .| ..+..+.||. ..|..++|+++..++++.+.||+++||
T Consensus 233 ~aavSP~GRFia~~gFTpD----VkVwE~~f~kdG~fqev~rvf~LkGH~---saV~~~aFsn~S~r~vtvSkDG~wriw 305 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFTPD----VKVWEPIFTKDGTFQEVKRVFSLKGHQ---SAVLAAAFSNSSTRAVTVSKDGKWRIW 305 (420)
T ss_pred ceeeCCCCcEEEEecCCCC----ceEEEEEeccCcchhhhhhhheeccch---hheeeeeeCCCcceeEEEecCCcEEEe
Confidence 8899999999999998554 9999753 22 2345678888 899999999999999999999999999
Q ss_pred ECCC-------CeEEEEE--cCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCee
Q 001403 598 DMNK-------VQLLTTI--DAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 649 (1084)
Q Consensus 598 d~~~-------~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 649 (1084)
|.+- .+.++.. ..+.....-..++.+|+|..||+... ..+.++..++++..
T Consensus 306 dtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~ 365 (420)
T KOG2096|consen 306 DTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDY 365 (420)
T ss_pred eccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccc
Confidence 9752 1222222 11222223348899999998887654 57888887766444
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=217.45 Aligned_cols=281 Identities=17% Similarity=0.234 Sum_probs=241.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
..+.++...|....+++|+.|.++.++|..+++.+. .+.||...|+.+.|+|+.. .+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 467788888887899999999999999999987766 7889999999999999998 79999999999999998888
Q ss_pred eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCC--CCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001403 469 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGE 546 (1084)
Q Consensus 469 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~d~~~l~~~~~~~~~~ 546 (1084)
.......|..+|+.+..++ .|.||++++.||+..+.|++++......... .-.+++.+|+|||..+.++.. +
T Consensus 295 ~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred Cccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 8888899999999999976 5579999999999999999999887766553 346899999999999999876 7
Q ss_pred eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCC
Q 001403 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 626 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 626 (1084)
+.|.+||+.++..+..|.+|. ++|..++|+.+|-+++++++|+.|++||++.-+..+++...... .+.++.|.+.|
T Consensus 369 ~~vkiwdlks~~~~a~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SG 444 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSG 444 (506)
T ss_pred ceEEEEEcCCccccccCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCC
Confidence 789999999999999999998 99999999999999999999999999999999988888876654 68999999999
Q ss_pred CEEEEEECCCeEEEEEcC--CCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcccc
Q 001403 627 TLLAVIANENRIKILETP--ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 704 (1084)
Q Consensus 627 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~ 704 (1084)
.+|+.++.+=.|++++-. +..++..+..|.+..+++.|. ....++++++.|..+++
T Consensus 445 t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg----------------------~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 445 TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG----------------------EHAQYLASTSMDAILRL 502 (506)
T ss_pred CeEEeecceeEEEEEecccccceeeehhhhcccccceeeec----------------------ccceEEeeccchhheEE
Confidence 999999877666666644 346666677777777777776 44556677777666555
Q ss_pred cc
Q 001403 705 EK 706 (1084)
Q Consensus 705 w~ 706 (1084)
+.
T Consensus 503 ~a 504 (506)
T KOG0289|consen 503 YA 504 (506)
T ss_pred ee
Confidence 43
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-25 Score=221.27 Aligned_cols=283 Identities=14% Similarity=0.218 Sum_probs=233.8
Q ss_pred eeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEE
Q 001403 428 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 507 (1084)
Q Consensus 428 ~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd 507 (1084)
.|.||.+.|.|++=.|..-. .+++|+.||.|++||+.+..++.++..|.+.|..+++.. ..+++++.|.+|+.|-
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46799999999999998622 699999999999999999999999999999999999954 5789999999999998
Q ss_pred CCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEE-E
Q 001403 508 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-L 586 (1084)
Q Consensus 508 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~ 586 (1084)
++.. ...++. ....+..+.-+..+..+++||. .|.|||.....++..+.... +.+.++.|+|....+ +
T Consensus 136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~---Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGA---DSISSVKFNPVETSILA 204 (433)
T ss_pred ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCC---CceeEEecCCCcchhee
Confidence 7763 222222 2334556666667788888864 39999999988998888766 789999999987655 4
Q ss_pred EEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC-CeeeeccccccceeEEEEc
Q 001403 587 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN 665 (1084)
Q Consensus 587 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~ 665 (1084)
+++.|+.|.+||++.+.+++.+...-. -+.++|+|++-.++++..|..++.+|+... .++....+|...|..+.|+
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred eeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence 566999999999999999988765443 578999999889999999999999999865 6777888899888888887
Q ss_pred CCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEee
Q 001403 666 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 745 (1084)
Q Consensus 666 p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~ 745 (1084)
|.|+-+++|+.|.+|+||....+..-..+... .-..|.++.||.|.+++++|+
T Consensus 282 ----------------------ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-----RMq~V~~Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 282 ----------------------PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-----RMQHVFCVKYSMDSKYIISGS 334 (433)
T ss_pred ----------------------CCcchhccccccceEEEeecCCCcchhhhhHh-----hhheeeEEEEeccccEEEecC
Confidence 66888999999999999998754433332211 345789999999999999999
Q ss_pred cCCceEEeecc
Q 001403 746 SNGVHLMWRWP 756 (1084)
Q Consensus 746 ~dg~i~vw~~~ 756 (1084)
.|+.|++|.-.
T Consensus 335 dd~nvRlWka~ 345 (433)
T KOG0268|consen 335 DDGNVRLWKAK 345 (433)
T ss_pred CCcceeeeecc
Confidence 99999999854
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=203.87 Aligned_cols=243 Identities=17% Similarity=0.253 Sum_probs=204.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
+..|...|+++|.+ |.|+|+|+.|-+|+|||+.....+. .+-.|.+.|+++.|.++-..-.|++|+.||.|.+|+
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 56799999999997 8999999999999999999886655 677899999999999886422599999999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 464 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
.....++.++++|.+.|+.++++|++ ++.++.+.|+.+++||+-.++.-+....... ...+.|+|.|.+++.++
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~--- 187 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG--- 187 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe---
Confidence 99999999999999999999998854 7889999999999999988877666554432 33499999999888876
Q ss_pred CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEE-
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF- 622 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~- 622 (1084)
...|-+|.+.+......+... ..+.++.|. ++..+++|++|+.|.+||..+..+...+..|.. .|..+.+
T Consensus 188 --~~~i~i~q~d~A~v~~~i~~~----~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~ 258 (362)
T KOG0294|consen 188 --RNKIDIYQLDNASVFREIENP----KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASY 258 (362)
T ss_pred --ccEEEEEecccHhHhhhhhcc----ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEE
Confidence 445999998887766555443 246666664 567999999999999999999888888887754 6887774
Q ss_pred -ecCCCEEEEEECCCeEEEEEcCCC
Q 001403 623 -NKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 623 -s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
.|++.+|++++.||.|++||+...
T Consensus 259 ~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 259 TNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ecCCceEEEEeccCceEEEEEcccc
Confidence 467899999999999999999876
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-21 Score=215.49 Aligned_cols=280 Identities=13% Similarity=0.180 Sum_probs=235.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCC-ccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEEC
Q 001403 386 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 464 (1084)
Q Consensus 386 ~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~-~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~ 464 (1084)
.|+..-+.++|.|+|++|++++.||.|++|+.... +... .+.-+...|.+++-. +. .|++|+.+++|.+|..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACY--SN--HFLTGSEQNTVLRYKF 83 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeec--cc--ceEEeeccceEEEeeC
Confidence 48889999999999999999999999999998776 3333 333377778877764 34 6999999999999999
Q ss_pred CCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001403 465 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 544 (1084)
Q Consensus 465 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 544 (1084)
..+..-..+....-++..+++ +.+|.+++.||.|-.|++-+.........+.++..+|.++.|+|++++||+.+.
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~--- 158 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC--- 158 (933)
T ss_pred CCCCccceeeeeeccceEEEE--ecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec---
Confidence 988876666667788999999 567889999999999999999999999999999999999999999999999876
Q ss_pred CCeeEEEecCCCceEeeeeeccccc-----cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcce
Q 001403 545 GESFLVEWNESEGAIKRTYQGLQLQ-----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 619 (1084)
Q Consensus 545 ~~~~i~~wd~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 619 (1084)
+|.|++||+.++.+...+.+.... ...+..++|+|++..+++.+.|+.|++|+..+.+....+........+..
T Consensus 159 -dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 159 -DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred -CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence 777999999999888777654311 23467789999999999999999999999999999998887655555889
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEe
Q 001403 620 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 682 (1084)
Q Consensus 620 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~ 682 (1084)
+.|+|+|+|||+++.+|.|.|||..+.. .......|.+++|.|+...+..-...|...+
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t~~----~~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDTHE----RHEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEecccch----hccccceeEEEecCCCCCeeEEEeecccccc
Confidence 9999999999999999999999999721 1445667999999999888766555554333
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=211.84 Aligned_cols=284 Identities=15% Similarity=0.181 Sum_probs=241.8
Q ss_pred CCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEE
Q 001403 335 SSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL 414 (1084)
Q Consensus 335 ~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~i 414 (1084)
..+.++...|....+++|..| +++.++|........ ++.||...|+.+.|+|+...+++++.|..|+|
T Consensus 220 pgi~ald~~~s~~~ilTGG~d---------~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~v 287 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGED---------KTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLDTVITASADEIIRV 287 (506)
T ss_pred CCeeEEeecCCCCcceecCCC---------CceEEEecchhhhhh---hccCcceEEEEEEeccchhheeecCCcceEEe
Confidence 378888888888889998777 899999998765553 38999999999999999999999999999999
Q ss_pred EEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEecc--CCCcEEEEeecccCCCc
Q 001403 415 YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIH 492 (1084)
Q Consensus 415 wd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~--h~~~v~~~~~~~~~~~~ 492 (1084)
|......... ....|.++|+.+...|.|+ ||++++.|++..+.|+++|..+..... ..-.+++.+|+| ||.
T Consensus 288 ws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp--DgL 360 (506)
T KOG0289|consen 288 WSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP--DGL 360 (506)
T ss_pred eccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC--Cce
Confidence 9998776444 6778999999999999999 899999999999999999998877654 234578889966 778
Q ss_pred EEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCc
Q 001403 493 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 572 (1084)
Q Consensus 493 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~ 572 (1084)
++.+|..||.|++||+.+......+.+|.++|..++|+.+|-+|++++. ++.|.+||++.-+...++.... ...
T Consensus 361 ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~l~~--~~~ 434 (506)
T KOG0289|consen 361 IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQLDE--KKE 434 (506)
T ss_pred EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceeeccc--ccc
Confidence 9999999999999999999999999999999999999999999999986 5559999999888777777665 357
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 573 VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 573 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
+.++.|.+.|.+++.++.|=.|++++-.+.+.......+.+......+.|....+++++++.|..++++.+
T Consensus 435 v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 435 VNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 99999999999999998887788777555444333333333335788999999999999999999888754
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=203.77 Aligned_cols=252 Identities=20% Similarity=0.331 Sum_probs=209.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeec--CCCcEEEEEEeCCCcEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKV 461 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~--d~~~l~l~s~~~d~~i~v 461 (1084)
...|++.|..+...--|++||+++.|++|+|+.+..+.....+.+|.||.++|..++|.. -|. +|++++.||.|.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIi 84 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEE
Confidence 456999999999888999999999999999999998776667779999999999999987 677 8999999999999
Q ss_pred EECCCCc--eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc---eEeecCCCCeEEEEEEcCC---C
Q 001403 462 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSAN---G 533 (1084)
Q Consensus 462 wd~~~g~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d---~ 533 (1084)
|.-+.|+ ..+....|...|++++|.|.+-|-.|++++.||.|.+.+++.... ......|.-.+.+++|.|- |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 9987774 346678899999999999999999999999999999999887632 3345677778999999986 5
Q ss_pred -----------CEEEEEeeCCCCCeeEEEecCCCce--EeeeeeccccccCceEEEEEcCCC----CEEEEEECCCcEEE
Q 001403 534 -----------RRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDDHVIKI 596 (1084)
Q Consensus 534 -----------~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~i 596 (1084)
+.|++++. |+.|.||+..+++ .-+.+.+|. +-|+.++|.|.- .+++++++||++.|
T Consensus 165 ~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~---dwVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHK---DWVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred cccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcc---hhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 56888876 7779999988763 334577887 999999999974 57899999999999
Q ss_pred EECCCC--eEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 597 WDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 597 wd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
|..... ....++ .+.....+..+.||..|+.|++++.|+.+.+|.-..
T Consensus 238 wt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 976532 111222 222334588999999999999999999999997553
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-25 Score=217.16 Aligned_cols=293 Identities=12% Similarity=0.164 Sum_probs=232.6
Q ss_pred cceeeecccCCCCceEEEEcCCC-ceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCE
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQ-HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 402 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg-~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 402 (1084)
.+-+..|.||.+.|.|+|=+|.. ..+|+|+.| |.|+|||+++...... +..|.+.|..+++.. ..
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~D---------G~VkiWnlsqR~~~~~---f~AH~G~V~Gi~v~~--~~ 121 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCD---------GEVKIWNLSQRECIRT---FKAHEGLVRGICVTQ--TS 121 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccC---------ceEEEEehhhhhhhhe---eecccCceeeEEecc--cc
Confidence 45567789999999999999998 899999988 9999999987554433 667999999999997 77
Q ss_pred EEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEE
Q 001403 403 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~ 482 (1084)
+++++.|.+|+.|.++.. ...++.+ ...+..+.-+..+. .++|||.+ |.|||.....++..+.--.+.|.+
T Consensus 122 ~~tvgdDKtvK~wk~~~~----p~~tilg-~s~~~gIdh~~~~~--~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~s 192 (433)
T KOG0268|consen 122 FFTVGDDKTVKQWKIDGP----PLHTILG-KSVYLGIDHHRKNS--VFATCGEQ--IDIWDEQRDNPVSSMSWGADSISS 192 (433)
T ss_pred eEEecCCcceeeeeccCC----cceeeec-cccccccccccccc--cccccCce--eeecccccCCccceeecCCCceeE
Confidence 889999999999998873 2223333 23466666666666 68898865 999999999999999888889999
Q ss_pred EeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-ceEee
Q 001403 483 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKR 561 (1084)
Q Consensus 483 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~ 561 (1084)
+.|+|... ..|++++.|+.|.+||++...++..... ......++|+|.+-.++++.. +..++.+|++. .+.+.
T Consensus 193 vkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~E----D~nlY~~DmR~l~~p~~ 266 (433)
T KOG0268|consen 193 VKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANE----DHNLYTYDMRNLSRPLN 266 (433)
T ss_pred EecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccc----cccceehhhhhhcccch
Confidence 99988754 6889999999999999998877654322 224467899996655666543 67799999875 34555
Q ss_pred eeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEE
Q 001403 562 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 641 (1084)
Q Consensus 562 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 641 (1084)
.+.+|. ..|..+.|+|.|+-+++||.|.+|+||....+.--..... .....|.+|.||.|.+++++|++|+.|++|
T Consensus 267 v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlW 342 (433)
T KOG0268|consen 267 VHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNVRLW 342 (433)
T ss_pred hhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCcceeee
Confidence 666666 8999999999999999999999999999987654433321 122358999999999999999999999999
Q ss_pred EcCCCCee
Q 001403 642 ETPESNSV 649 (1084)
Q Consensus 642 d~~~~~~~ 649 (1084)
.....+.+
T Consensus 343 ka~Asekl 350 (433)
T KOG0268|consen 343 KAKASEKL 350 (433)
T ss_pred ecchhhhc
Confidence 88755433
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-23 Score=232.02 Aligned_cols=248 Identities=12% Similarity=0.171 Sum_probs=189.6
Q ss_pred EeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC-CCcEEEEEEeCCCcEEEEECCCCc--------eeeEeccC
Q 001403 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS--------RTYSFEGH 476 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d-~~~l~l~s~~~d~~i~vwd~~~g~--------~~~~~~~h 476 (1084)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+ +. +|++|+.|++|+|||+.++. .+..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5567889999987653 33478899999999999997 56 89999999999999998642 34567899
Q ss_pred CCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC
Q 001403 477 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 556 (1084)
Q Consensus 477 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~ 556 (1084)
...|.+++|+|... .++++++.||+|++||+.++.....+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999977532 356799999999999999888766665 4568999999999999998875 66799999999
Q ss_pred ceEeeeeeccccccCce-----EEEEEcCCCCEEEEEECCC----cEEEEECCC-CeEEEEEcCCCCCCCcceEEEecCC
Q 001403 557 GAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDH----VIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNG 626 (1084)
Q Consensus 557 ~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~ 626 (1084)
++.+..+.+|. +.+ ....|++++.++++++.|+ .|+|||+++ ++++.....+.....+......++|
T Consensus 199 g~~i~tl~gH~---g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg 275 (568)
T PTZ00420 199 QEIASSFHIHD---GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG 275 (568)
T ss_pred CcEEEEEeccc---CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence 99999998887 433 3334568999999988664 799999985 6677666555443333333334568
Q ss_pred CEEEEEECCCeEEEEEcCCCCeeeecc-ccccceeEEEEcCC
Q 001403 627 TLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPI 667 (1084)
Q Consensus 627 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~p~ 667 (1084)
.++++|..|+.|++|++..+.....-. .+..++.+++|.|.
T Consensus 276 ~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 276 LIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred CEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence 899999999999999998763222111 13345556666653
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-24 Score=204.86 Aligned_cols=298 Identities=14% Similarity=0.174 Sum_probs=243.2
Q ss_pred cceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
..+++.+.||.+.||.++.-.....+.+++.| .+.+||.++++....+ +.||.+.|.+++|++.+.++
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASAD---------hTA~iWs~Esg~CL~~---Y~GH~GSVNsikfh~s~~L~ 205 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASAD---------HTARIWSLESGACLAT---YTGHTGSVNSIKFHNSGLLL 205 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccc---------cceeEEeeccccceee---ecccccceeeEEeccccceE
Confidence 45667789999999999999988999999888 9999999999888766 78999999999999999999
Q ss_pred EEEeCCCEEEEEEc------cC--------Cc----------------------c-ccceeeeecccccEeEEEeecCCC
Q 001403 404 GVAYSKHIVQLYAY------HG--------GS----------------------D-ARQQLEIDAHVGNVNDLAFSAPCK 446 (1084)
Q Consensus 404 as~~~dg~v~iwd~------~~--------~~----------------------~-~~~~~~l~~h~~~V~~l~~s~d~~ 446 (1084)
++++.|++..||.. .. ++ . ..++..+.+|.+.|.+..|...|+
T Consensus 206 lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~ 285 (481)
T KOG0300|consen 206 LTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ 285 (481)
T ss_pred EEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc
Confidence 99999999999962 11 00 0 123457889999999999999999
Q ss_pred cEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCC-ceEeecCCCCeEE
Q 001403 447 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCT 525 (1084)
Q Consensus 447 ~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~ 525 (1084)
-+++++.|.+..+||+++|..+..+.||....+.++-+|. ..++++.+.|-+.++||++..- ....+.+|...|+
T Consensus 286 --Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVT 361 (481)
T KOG0300|consen 286 --QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT--QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVT 361 (481)
T ss_pred --eeeeeeccccceeeeeccCceeccccCcchhccccccCCc--ceEEEEeccCceeEeccchhhcceeeeeccccccee
Confidence 6999999999999999999999999999999999988764 4789999999999999998433 3567899999999
Q ss_pred EEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc-eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeE
Q 001403 526 RMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 604 (1084)
Q Consensus 526 ~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 604 (1084)
++.|..|.+ +++++. +.+|.+||+++. ..+.++... .+++.++.+..++.++.--++..|++||+...++
T Consensus 362 S~vF~~dd~-vVSgSD----DrTvKvWdLrNMRsplATIRtd----S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl 432 (481)
T KOG0300|consen 362 SVVFNTDDR-VVSGSD----DRTVKVWDLRNMRSPLATIRTD----SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL 432 (481)
T ss_pred EEEEecCCc-eeecCC----CceEEEeeeccccCcceeeecC----CccceeEeecCCceEEeccCCceEEEEecCCCcc
Confidence 999987765 556553 778999999874 345555543 4889999998888888888999999999975544
Q ss_pred EEEE--cCCCCCCCcceEEEecCC--CEEEEEECCCeEEEEEcCCC
Q 001403 605 LTTI--DAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPES 646 (1084)
Q Consensus 605 ~~~~--~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iwd~~~~ 646 (1084)
.... ...++..-|.|++|..+. .-|++++.|..+.-|.+...
T Consensus 433 aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 433 ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 3322 122333358899998643 45788889999999987653
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=203.81 Aligned_cols=331 Identities=16% Similarity=0.231 Sum_probs=244.4
Q ss_pred EeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeE
Q 001403 559 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 638 (1084)
Q Consensus 559 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 638 (1084)
.++.+.||. +.|+.++.....+.+.+++.|.+.+||.+++|.++.++.+|.+ .|+++.|++.+.++++++.|++-
T Consensus 140 lvre~~GHk---DGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G--SVNsikfh~s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 140 LVRELEGHK---DGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTG--SVNSIKFHNSGLLLLTASGDETA 214 (481)
T ss_pred ehhhhcccc---cceeeehhhcCCcceeecccccceeEEeeccccceeeeccccc--ceeeEEeccccceEEEccCCcch
Confidence 345677887 8899988877778888899999999999999999999997755 69999999999999999999999
Q ss_pred EEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceee
Q 001403 639 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 718 (1084)
Q Consensus 639 ~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 718 (1084)
.||...-.-++..-. ...-.++.. . .++..
T Consensus 215 HIW~~av~~~vP~~~------------------------------------a~~~hSsEe--E-----------~e~sD- 244 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNN------------------------------------APSDHSSEE--E-----------EEHSD- 244 (481)
T ss_pred HHHHHhhcCcCCCCC------------------------------------CCCCCCchh--h-----------hhccc-
Confidence 999744221110000 000000000 0 00000
Q ss_pred ccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCcc
Q 001403 719 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 798 (1084)
Q Consensus 719 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 798 (1084)
.| .+-..-....||. +|++ ....++ +|...|.
T Consensus 245 -----e~-~~d~d~~~~sD~~---------tiRv-------------------------------Pl~~lt--gH~~vV~ 276 (481)
T KOG0300|consen 245 -----EH-NRDTDSSEKSDGH---------TIRV-------------------------------PLMRLT--GHRAVVS 276 (481)
T ss_pred -----cc-ccccccccccCCc---------eeee-------------------------------eeeeee--ccccceE
Confidence 00 0000000011111 2221 111122 4899999
Q ss_pred EEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-eeeeeecc
Q 001403 799 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEG 876 (1084)
Q Consensus 799 ~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~-~~~~~l~~ 876 (1084)
+..|-..|+.+++++ |.+..+||+++|+.+..+.+|....+.++-+| ..+++++.+.|.+.++||+... ..+..|+|
T Consensus 277 a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQG 355 (481)
T KOG0300|consen 277 ACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQG 355 (481)
T ss_pred ehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecc
Confidence 999999999999999 89999999999999999999999999999999 8999999999999999999853 45788999
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEE
Q 001403 877 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYE 955 (1084)
Q Consensus 877 h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd 955 (1084)
|.+.|+++.|.-| ..+++|+.|.+|+|||+..... .+.+... ..++..++.+..+..||.- .+..|++||
T Consensus 356 HtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRs----plATIRt----dS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 356 HTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRS----PLATIRT----DSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccceeEEEEecC-CceeecCCCceEEEeeeccccC----cceeeec----CCccceeEeecCCceEEeccCCceEEEEe
Confidence 9999999999876 5688999999999999987331 2222222 1358899999999999996 556899999
Q ss_pred cCCcceee---EeecCCCCCEEEEEEccCC--CEEEEEeCCCcEEEEEcCCC
Q 001403 956 AEELTCLK---QWFPISSVPISQATFSCDC--RMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 956 ~~~~~~~~---~~~~~h~~~v~~l~fs~dg--~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
+...+..+ .-..+|..-|+|++|+.+. .-|++++-|..+.-|++..-
T Consensus 427 lnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 427 LNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 97443322 2235789999999999764 45899999999999998653
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=225.11 Aligned_cols=279 Identities=15% Similarity=0.200 Sum_probs=232.3
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeE-EEeecCCCcEEEEEEeCCCcEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-LAFSAPCKQISVITCGDDKTIKV 461 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~l~s~~~d~~i~v 461 (1084)
.+.||...|..+++.++. .+++++.||++++|+-..++-+. ...+.+|.+-|.+ +++-+..+. .+++|+.|.+|.+
T Consensus 9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~-~~~~~~~~g~i~~~i~y~e~~~~-~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLE-THAFEGPKGFIANSICYAESDKG-RLVVGGMDTTIIV 85 (745)
T ss_pred EeccCccchheeEecCCe-EEeecCCCCceeeeeccCccccc-ceecccCcceeeccceeccccCc-ceEeecccceEEE
Confidence 478999999999987655 89999999999999987765443 2356778887777 888753332 5999999999999
Q ss_pred EECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEee
Q 001403 462 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 462 wd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 541 (1084)
|...+..+++.+.+|...|.+++. ..++ .+++||.|.++++|. .++....+.+|...|++++.-|++ .+++++.
T Consensus 86 ~~~~~~~P~~~LkgH~snVC~ls~--~~~~-~~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsa 159 (745)
T KOG0301|consen 86 FKLSQAEPLYTLKGHKSNVCSLSI--GEDG-TLISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPEN-TYVTGSA 159 (745)
T ss_pred EecCCCCchhhhhccccceeeeec--CCcC-ceEecccccceEEec--chhhhcccCCcchheeeeeecCCC-cEEeccC
Confidence 999999999999999999999986 3343 499999999999994 445666789999999999999998 6667765
Q ss_pred CCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEE
Q 001403 542 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 621 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 621 (1084)
|..|++|.- ++.+++|.+|. +.|+.+++-++ ..+++++.||.|+.|++ +|+.+....+|.. .++++.
T Consensus 160 ----DKtIklWk~--~~~l~tf~gHt---D~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn--~vYsis 226 (745)
T KOG0301|consen 160 ----DKTIKLWKG--GTLLKTFSGHT---DCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTN--FVYSIS 226 (745)
T ss_pred ----cceeeeccC--Cchhhhhccch---hheeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccce--EEEEEE
Confidence 677999986 88899999998 99999999876 47899999999999999 7788877776644 689999
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCc
Q 001403 622 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 701 (1084)
Q Consensus 622 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~ 701 (1084)
...++..+++++.|++++||+.. .+.+.+.-+...++++.+-+. | -+++|++||.
T Consensus 227 ~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~N----------------------g-DIvvg~SDG~ 281 (745)
T KOG0301|consen 227 MALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLN----------------------G-DIVVGGSDGR 281 (745)
T ss_pred ecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeC----------------------C-CEEEeccCce
Confidence 88888999999999999999987 677777777778887776532 2 2778999999
Q ss_pred cccccce
Q 001403 702 SEVEKPL 708 (1084)
Q Consensus 702 i~~w~~~ 708 (1084)
+|+|...
T Consensus 282 VrVfT~~ 288 (745)
T KOG0301|consen 282 VRVFTVD 288 (745)
T ss_pred EEEEEec
Confidence 9999865
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-21 Score=213.34 Aligned_cols=504 Identities=15% Similarity=0.162 Sum_probs=321.7
Q ss_pred eEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCC-cEEEEEecCCeEEEEECCCCCceE
Q 001403 437 NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARV 515 (1084)
Q Consensus 437 ~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~ 515 (1084)
..-.||+|++ .++.+. +..|.||...||.++..+.+|..++.++.+.+.+.. .++++++.||.|++||........
T Consensus 20 ~~avfSnD~k--~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 20 SPAVFSNDAK--FLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred cccccccCCc--EEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 3457999999 444333 678999999999999999999999999999877654 678899999999999999888777
Q ss_pred eecCCCCeEEEEEEcC---CCCEEEEEeeCCCCCeeEEEecCCCceEe-------------eeeeccccccCceEEEEEc
Q 001403 516 DYDAPGLGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEGAIK-------------RTYQGLQLQHNSVSVVHFD 579 (1084)
Q Consensus 516 ~~~~~~~~i~~~~~s~---d~~~l~~~~~~~~~~~~i~~wd~~~~~~~-------------~~~~~~~~~~~~v~~~~~s 579 (1084)
.+..... +..+.+.| +-...+..+.. + ...+........... .....+. .-.++.++
T Consensus 97 t~~~~~~-v~~~~~~~~~a~~s~~~~~s~~-~-~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~----~~~~I~~~ 169 (792)
T KOG1963|consen 97 TFDNNLP-VHALVYKPAQADISANVYVSVE-D-YSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ----EPKSIVDN 169 (792)
T ss_pred EEecCCc-eeEEEechhHhCccceeEeecc-c-ceeeeecccccccceeeeEeeeccccchhhhhhhc----CCccEEEc
Confidence 6655443 22222211 11112211110 0 000111111111111 1111111 13567788
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeEEEEEc---CCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccc
Q 001403 580 TAKDQILAAGDDHVIKIWDMNKVQLLTTID---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS 656 (1084)
Q Consensus 580 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 656 (1084)
+.+.+....- +..+.+|+..++. ..... ...+.-.+.+++++|+++++|++..||.|.+|.--.. ....
T Consensus 170 ~~ge~~~i~~-~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------~~~~ 241 (792)
T KOG1963|consen 170 NSGEFKGIVH-MCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------SDDS 241 (792)
T ss_pred CCceEEEEEE-eeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc------cccc
Confidence 8776655544 4568888887754 11111 0112223789999999999999999999999974421 0000
Q ss_pred cceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEec
Q 001403 657 DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNN 736 (1084)
Q Consensus 657 ~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 736 (1084)
-+.++|.- |...|.+++|++
T Consensus 242 -------------------------------------------~t~t~lHW-----------------H~~~V~~L~fS~ 261 (792)
T KOG1963|consen 242 -------------------------------------------ETCTLLHW-----------------HHDEVNSLSFSS 261 (792)
T ss_pred -------------------------------------------ccceEEEe-----------------cccccceeEEec
Confidence 01111111 567899999999
Q ss_pred CCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CC
Q 001403 737 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GG 815 (1084)
Q Consensus 737 ~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg 815 (1084)
+|.+|++|+..|.+.+|.+..++. .. ++. -.++|..+.+|||+.+.+... |+
T Consensus 262 ~G~~LlSGG~E~VLv~Wq~~T~~k----------------------qf---LPR--Lgs~I~~i~vS~ds~~~sl~~~DN 314 (792)
T KOG1963|consen 262 DGAYLLSGGREGVLVLWQLETGKK----------------------QF---LPR--LGSPILHIVVSPDSDLYSLVLEDN 314 (792)
T ss_pred CCceEeecccceEEEEEeecCCCc----------------------cc---ccc--cCCeeEEEEEcCCCCeEEEEecCc
Confidence 999999999999999988765421 11 222 577899999999999887765 89
Q ss_pred eEEEEEcCCceeEEEEcCC-----------CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc--------
Q 001403 816 VISLYIVMTFKTILTIMPP-----------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-------- 876 (1084)
Q Consensus 816 ~i~vwd~~~~~~~~~~~~~-----------~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~-------- 876 (1084)
.|.+..+.+.+...++.+. .+-.+.++++| .-+.++..+..|.|.+||+-+.+.+..+..
T Consensus 315 qI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~ 393 (792)
T KOG1963|consen 315 QIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDG 393 (792)
T ss_pred eEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCC
Confidence 9999988776665554432 23457888999 677888889999999999988766655431
Q ss_pred ---cccCEEEEEEcCCCCEEEEEeC--------CC--cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCC-E
Q 001403 877 ---HSKRVTGLVFSDALNILVSSGG--------DA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT-R 942 (1084)
Q Consensus 877 ---h~~~V~~l~~spd~~~l~s~s~--------dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~ 942 (1084)
+.-.+++++.+-.|.+++|.-. || .+++|-.................|.. ..+..+.+++... .
T Consensus 394 ~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~--~~vat~~~~~~rs~~ 471 (792)
T KOG1963|consen 394 DVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN--AFVATIFLNPTRSVR 471 (792)
T ss_pred cceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc--eeEEEEEecCcccce
Confidence 3345888888889999998642 33 47889877644322222222223332 1233444444433 5
Q ss_pred EEE-EeCCeEEEEEcCCcc----------eeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC-CceeEEecc
Q 001403 943 FLL-VHETHLAIYEAEELT----------CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCRILS 1010 (1084)
Q Consensus 943 la~-~~d~~i~vwd~~~~~----------~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~-~~~~~~~~~ 1010 (1084)
.++ +.||.++||-....+ |... -.-|..++++++||.||..|+. +.|++|.+||..+ .++.+....
T Consensus 472 ~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i-~sy~k~~i~a~~fs~dGslla~-s~~~~Itiwd~~~~~~l~~~~~~ 549 (792)
T KOG1963|consen 472 CVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI-GSYHKTPITALCFSQDGSLLAV-SFDDTITIWDYDTKNELLCTEGS 549 (792)
T ss_pred eEEeccCCeEEEEEEecccccCcCccceEEeee-eccccCcccchhhcCCCcEEEE-ecCCEEEEecCCChhhhhccccc
Confidence 555 689999999883222 1111 1236889999999999976664 5788999999999 555544432
Q ss_pred ccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCCCc
Q 001403 1011 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1059 (1084)
Q Consensus 1011 ~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~~~ 1059 (1084)
..+...+ . +..+-.+. ...++....+.+.+|++..-.-.|
T Consensus 550 ~~~~~~~-----~--~~~~~~~~--~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 550 RNWPIAE-----L--LFTAQTQN--DGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred cccchHh-----H--hhhccccc--ccceeeccCceEehHhhhhhheec
Confidence 1111111 0 11122222 234445567889999998877767
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.7e-24 Score=216.52 Aligned_cols=285 Identities=15% Similarity=0.200 Sum_probs=231.9
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeec--CCCCCeEEEEEcCCCCEEEEEeCC
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR--DPGVSVNRVVWSPDGSLLGVAYSK 409 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~--~h~~~V~~v~fspdg~~las~~~d 409 (1084)
.|.+-|.++++|...+++.+| |+ |-|+|||+...........+. ...+-|.++.++|||+.|++|+.-
T Consensus 417 ~HGEvVcAvtIS~~trhVyTg------Gk----gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea 486 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTG------GK----GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA 486 (705)
T ss_pred ccCcEEEEEEecCCcceeEec------CC----CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc
Confidence 677789999999999999997 33 889999998654433322121 235689999999999999999999
Q ss_pred CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccC
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 489 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~ 489 (1084)
.++.|||+..... +...++..-.-...+++.+||.+ +.+++..||.|.|||+.+...++.|.||.+.+.||.+ +.
T Consensus 487 stlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi--s~ 561 (705)
T KOG0639|consen 487 STLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI--SK 561 (705)
T ss_pred ceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe--cC
Confidence 9999999987643 11123434344677899999999 8889999999999999999999999999999999999 56
Q ss_pred CCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccc
Q 001403 490 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569 (1084)
Q Consensus 490 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 569 (1084)
||..|-||+.|.+||.||++.+........ ...|.++..+|.+.+++++-. ++.+.+.... +.....+..|.
T Consensus 562 dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-kp~kyqlhlhe-- 633 (705)
T KOG0639|consen 562 DGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-KPEKYQLHLHE-- 633 (705)
T ss_pred CCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecC-Cccceeecccc--
Confidence 889999999999999999998776554432 347889999999999999875 5557766643 33344455555
Q ss_pred cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
..|.++.|++.|+++++.+.|..+..|...-|..+...... ..|.++.++.|.+++++|+.|....+|.+
T Consensus 634 -ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 634 -SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -cEEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 88999999999999999999999999999988877776533 45899999999999999999988888764
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-22 Score=221.17 Aligned_cols=284 Identities=17% Similarity=0.183 Sum_probs=219.3
Q ss_pred ccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC
Q 001403 725 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 804 (1084)
Q Consensus 725 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 804 (1084)
|....+.++|.|+|..|++++.||.|++|+....... ..... .+...|.+++.
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~---------------------P~ti~----~~g~~v~~ia~-- 64 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE---------------------PETID----ISGELVSSIAC-- 64 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC---------------------Cchhh----ccCceeEEEee--
Confidence 6777899999999999999999999999986543110 11100 03445555555
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEE
Q 001403 805 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 883 (1084)
Q Consensus 805 dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 883 (1084)
++.++++++ +++|.+|.+.+++.-..+....-++.+++|+. +|+++|.|++|-.|++-++.+......+++|.++|.+
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence 455777777 79999999998887766666677899999999 9999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEE-EEeCCeEEEEEcCCccee
Q 001403 884 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-LVHETHLAIYEAEELTCL 962 (1084)
Q Consensus 884 l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la-~~~d~~i~vwd~~~~~~~ 962 (1084)
+.|+|++.+||+.+-||.|++||++++.+.....--........+..+..++|+|+|..+| .+.|+.|.+|+..+.+..
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence 9999999999999999999999999876433211111111111124578899999955555 489999999999999988
Q ss_pred eEeecCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEE
Q 001403 963 KQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1041 (1084)
Q Consensus 963 ~~~~~~h-~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~ 1041 (1084)
..+...+ ...+..+.|||+|+|||+++.||.|.|||+++-+. |.-.-..++++|.|+ ++-+-..
T Consensus 224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~--------------~~~~~~Vc~~aw~p~-~n~it~~ 288 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER--------------HEFKRAVCCEAWKPN-ANAITLI 288 (933)
T ss_pred eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh--------------ccccceeEEEecCCC-CCeeEEE
Confidence 8877665 34499999999999999999999999999998211 111123457889984 6666666
Q ss_pred eCCCcEEEEc
Q 001403 1042 LTNGEVYVIE 1051 (1084)
Q Consensus 1042 ~~dg~v~vw~ 1051 (1084)
...|...+|.
T Consensus 289 ~~~g~~~~~~ 298 (933)
T KOG1274|consen 289 TALGTLGVSP 298 (933)
T ss_pred eeccccccCh
Confidence 6666666554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-21 Score=205.18 Aligned_cols=492 Identities=11% Similarity=0.137 Sum_probs=286.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001403 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 469 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~ 469 (1084)
.|..++|-|||..|+.+..+. +.+||++.|..+. ++++|.+.|.|++|+.||+ .+++|+.|+.|.+|+..-..
T Consensus 14 ci~d~afkPDGsqL~lAAg~r-lliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~klEG- 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSR-LLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSKLEG- 86 (1081)
T ss_pred chheeEECCCCceEEEecCCE-EEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEecccccc-
Confidence 899999999999999887665 9999999998776 7899999999999999999 89999999999999854322
Q ss_pred eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeE
Q 001403 470 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 549 (1084)
Q Consensus 470 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 549 (1084)
+..+ .|.+.|.|+.|+|-. +.|++++.. ..-+|..+.... .-......+.+.+|..||++++.|-. +|+|
T Consensus 87 ~LkY-SH~D~IQCMsFNP~~--h~LasCsLs-dFglWS~~qK~V--~K~kss~R~~~CsWtnDGqylalG~~----nGTI 156 (1081)
T KOG1538|consen 87 ILKY-SHNDAIQCMSFNPIT--HQLASCSLS-DFGLWSPEQKSV--SKHKSSSRIICCSWTNDGQYLALGMF----NGTI 156 (1081)
T ss_pred eeee-ccCCeeeEeecCchH--HHhhhcchh-hccccChhhhhH--HhhhhheeEEEeeecCCCcEEEEecc----CceE
Confidence 2223 499999999997643 678887754 355675443221 11122347889999999999999975 6778
Q ss_pred EEecCCCceEeeeeeccccccCceEEEEEcCCC-----CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec
Q 001403 550 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-----DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 624 (1084)
Q Consensus 550 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 624 (1084)
.+-+ .+|+....+.-....+.+|.+++|+|.. ..+++.....++.++.+. |+.+..-..-+. ...|+.+.+
T Consensus 157 siRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~F--dP~CisYf~ 232 (1081)
T KOG1538|consen 157 SIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNF--DPCCISYFT 232 (1081)
T ss_pred Eeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCC--Cchhheecc
Confidence 8876 3455544444433335899999999973 466777777788777774 444432211111 246889999
Q ss_pred CCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcccc
Q 001403 625 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 704 (1084)
Q Consensus 625 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~ 704 (1084)
+|.++..|+.|+.+.+|.-+ |-.+.++......|+.++.. |++++++.|..||++--
T Consensus 233 NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~~D~WIWtV~~~----------------------PNsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 233 NGEYILLGGSDKQLSLFTRD-GVRLGTVGEQDSWIWTVQAK----------------------PNSQYVVVGCQDGTIAC 289 (1081)
T ss_pred CCcEEEEccCCCceEEEeec-CeEEeeccccceeEEEEEEc----------------------cCCceEEEEEccCeeeh
Confidence 99999999999999998644 33444444455555555554 34444555555555555
Q ss_pred ccceeecCccceeeccCCccccceEEEEEEe--cCCCeEEEeecC--CceEEeeccCCccCcCcccceecCCeeecCCCC
Q 001403 705 EKPLFARPSECQSLLLPSKVKANKISRLTYN--NGGQAIFALASN--GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 780 (1084)
Q Consensus 705 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s--~~g~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1084)
|++..... ..+....-........+.+- -.++.+-....| ..+.+|+-.. .......+.+|...++
T Consensus 290 yNl~fSTV---H~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrL-------AVQLpeki~iYel~se 359 (1081)
T KOG1538|consen 290 YNLIFSTV---HGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRL-------AVQLPEKILIYELYSE 359 (1081)
T ss_pred hhhHHhHh---hhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhh-------eecccceEEEEecccc
Confidence 55431100 00000000000000000000 000000000000 0111111000 0001112334443333
Q ss_pred CccccccCcCCCCCCCccEEEec---CCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEE--EcCCCCcEEEEEe
Q 001403 781 PQFMVNDTTDSNSQEAVPCFALS---KNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLA--FNPHDNNVIAIGM 855 (1084)
Q Consensus 781 ~~~~~~~~~~~~~~~~v~~l~~s---~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~--~s~~d~~~la~g~ 855 (1084)
.. .....+- ...-...+.+| -.+..++.+.+..+..+|...-+. +... -.+-|.-+. =.|.+..-|+.|.
T Consensus 360 ~~-~~mhY~v--~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~-ReW~-M~S~iRYikV~GGP~gREgL~vGl 434 (1081)
T KOG1538|consen 360 DL-SDMHYRV--KEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKE-REWQ-MESLIRYIKVIGGPPGREGLLVGL 434 (1081)
T ss_pred cc-ccchhHH--HHHHHhhccceEEEEEcCeEEEEcccceeeecccchhh-hhhh-HHHHHHhhhhhcCCCCcceeEEEe
Confidence 21 0000000 00001111111 134566666677777777753211 1000 000111111 1122556788899
Q ss_pred CCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEE
Q 001403 856 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 935 (1084)
Q Consensus 856 ~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 935 (1084)
.||.|.-.=+++.-++-... ....|.|+..+...+.||+....++..++|+.+++. .++.+ .+.+++
T Consensus 435 knGqV~kiF~dN~~PiLl~~-~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QEp--------g~nSV~ 501 (1081)
T KOG1538|consen 435 KNGQVLKIFVDNLFPILLLK-QATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQEP--------GANSVA 501 (1081)
T ss_pred cCCcEEEEEecCCchhheec-ccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----EeecC--------CCceEE
Confidence 99877654455443333222 456799999999999999999999999999999662 22222 477899
Q ss_pred EccCCCEEEE-EeCCeEEE
Q 001403 936 FHKDQTRFLL-VHETHLAI 953 (1084)
Q Consensus 936 ~s~dg~~la~-~~d~~i~v 953 (1084)
|.....-+.+ +..|.+.|
T Consensus 502 wNT~~E~MlcfT~~g~L~V 520 (1081)
T KOG1538|consen 502 WNTQCEDMLCFTGGGYLNV 520 (1081)
T ss_pred eeccccceEEEecCCceEE
Confidence 9876554444 54455443
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-23 Score=193.95 Aligned_cols=256 Identities=16% Similarity=0.193 Sum_probs=209.4
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC--CCCEEEE
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGV 405 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~las 405 (1084)
.+-.+|.+-|-.+...--|++||+++.| ++|+|+.+...........|.||.++|+.++|.. -|.+||+
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD---------~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAS 75 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSD---------GTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILAS 75 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCC---------ccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeE
Confidence 3456899999999999999999999998 9999999988776555556999999999999976 8999999
Q ss_pred EeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-c--eeeEeccCCCcEEE
Q 001403 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-S--RTYSFEGHGAPVYS 482 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g-~--~~~~~~~h~~~v~~ 482 (1084)
++.||.|.||.-++|+ ..+..+...|...|++++|.|.+-.+.|++++.||.|.|.+.++. . .......|.-.|++
T Consensus 76 csYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvns 154 (299)
T KOG1332|consen 76 CSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNS 154 (299)
T ss_pred eecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccce
Confidence 9999999999999884 445557789999999999999988889999999999999987754 2 22345779999999
Q ss_pred EeecccCC-C-----------cEEEEEecCCeEEEEECCCCCc--eEeecCCCCeEEEEEEcCCC----CEEEEEeeCCC
Q 001403 483 LCPHAKEN-I-----------HFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG----RRLFSCGTSKE 544 (1084)
Q Consensus 483 ~~~~~~~~-~-----------~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d~----~~l~~~~~~~~ 544 (1084)
++|.|..- | ..|++|+.|..|++|+.++..- ...+..|...++.++|.|.- ..|++|+.
T Consensus 155 Vswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq--- 231 (299)
T KOG1332|consen 155 VSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ--- 231 (299)
T ss_pred eeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC---
Confidence 99987521 1 5799999999999999987632 33478899999999999965 46888875
Q ss_pred CCeeEEEecCCCc--eEe-eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 001403 545 GESFLVEWNESEG--AIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 600 (1084)
Q Consensus 545 ~~~~i~~wd~~~~--~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 600 (1084)
++.+.||-.... ... ..+.... ..+..+.|++.|+.|++++.|+.+.+|.-.
T Consensus 232 -Dg~viIwt~~~e~e~wk~tll~~f~---~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 232 -DGTVIIWTKDEEYEPWKKTLLEEFP---DVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred -CCcEEEEEecCccCcccccccccCC---cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 667999976521 111 1122223 679999999999999999999999999754
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-22 Score=191.22 Aligned_cols=308 Identities=13% Similarity=0.181 Sum_probs=231.9
Q ss_pred cccCCCCceEEEEcC-CCceeeeecccccCccccccceEEEEEcCCcccc------------ceeeeecCCCCCeEEEEE
Q 001403 330 LIEGSSSPMSMDFHP-VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSML------------FKTALVRDPGVSVNRVVW 396 (1084)
Q Consensus 330 l~~h~~~V~~v~~sp-dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~------------~~~~~~~~h~~~V~~v~f 396 (1084)
..-|.+.|.++.+-| .|+|+++|..| |.+.|||++..... ..+....+|+-.|..+.|
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgad---------gsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~W 109 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGAD---------GSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIW 109 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCC---------ccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEE
Confidence 356778999999988 68999999888 99999999754311 111234678899999999
Q ss_pred cC-CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCC-cEEEEEEeCCCcEEEEECCCCceeeEec
Q 001403 397 SP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAVTGSRTYSFE 474 (1084)
Q Consensus 397 sp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~-~l~l~s~~~d~~i~vwd~~~g~~~~~~~ 474 (1084)
-| |...+.+++.|.+++|||.++-+... .+ .-.+.|.+-++||-.. .-++++|..|-.|++.|+.+|...+++.
T Consensus 110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls 185 (397)
T KOG4283|consen 110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS 185 (397)
T ss_pred eeecCceeecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec
Confidence 99 77789999999999999999975443 33 3456788888888643 3367888889999999999999999999
Q ss_pred cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecC
Q 001403 475 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 554 (1084)
Q Consensus 475 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~ 554 (1084)
||.+.|.++.|+|..+ -.|++|+.||.|++||++.. .+..++.|.
T Consensus 186 GHr~~vlaV~Wsp~~e-~vLatgsaDg~irlWDiRra----------------------------------sgcf~~lD~ 230 (397)
T KOG4283|consen 186 GHRDGVLAVEWSPSSE-WVLATGSADGAIRLWDIRRA----------------------------------SGCFRVLDQ 230 (397)
T ss_pred cccCceEEEEeccCce-eEEEecCCCceEEEEEeecc----------------------------------cceeEEeec
Confidence 9999999999998754 68899999999999998742 111344444
Q ss_pred CCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC---CC-CCCcceEEEecCCCEEE
Q 001403 555 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG---GG-LPENPRICFNKNGTLLA 630 (1084)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~-~~~v~~v~~s~~~~~l~ 630 (1084)
.+++....++....|.+.+..++|+.++.++++.+.|..+++|+..+|+....-.+. .. ...-..+. +.+...++
T Consensus 231 hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv 309 (397)
T KOG4283|consen 231 HNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFV 309 (397)
T ss_pred ccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEE
Confidence 443333333322334489999999999999999999999999999987643222111 00 00001122 33455566
Q ss_pred EEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccce
Q 001403 631 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 631 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
..-.++.+.++++-++..++.+..|...+.|.++. ++-+...+++.|+.+..|-..
T Consensus 310 ~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~----------------------~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 310 LFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYR----------------------PDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred EEecCCeEEEEEccCceEEEeeecccceeeEEeec----------------------CchhhhhccccCCcccccccc
Confidence 66677999999999999999999998889888887 445566778888888888754
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.7e-21 Score=208.20 Aligned_cols=279 Identities=18% Similarity=0.235 Sum_probs=202.5
Q ss_pred CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEE-EEEECCCeEEEEEcCCCCeeeeccccccceeE
Q 001403 583 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRK 661 (1084)
Q Consensus 583 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 661 (1084)
..+++++.|+.|++||..+++.+..+..+.. +..++|+|+++.+ ++++.++.|++||..+++....+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~---~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------- 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR---PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-------- 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC---CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--------
Confidence 5678899999999999999998888875433 5679999999876 556678899999977553221110
Q ss_pred EEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeE
Q 001403 662 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 741 (1084)
Q Consensus 662 ~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 741 (1084)
T Consensus 71 -------------------------------------------------------------------------------- 70 (300)
T TIGR03866 71 -------------------------------------------------------------------------------- 70 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--CCeEEE
Q 001403 742 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISL 819 (1084)
Q Consensus 742 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--dg~i~v 819 (1084)
....+..++++|+++.+++++ ++.+++
T Consensus 71 ---------------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 71 ---------------------------------------------------SGPDPELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred ---------------------------------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEE
Confidence 000123456777777665543 578999
Q ss_pred EEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCC-eEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEE-e
Q 001403 820 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS-G 897 (1084)
Q Consensus 820 wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg-~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~-s 897 (1084)
||+.+++.+..+.. ...+.+++|+| ++++++++..++ .+.+||..+++.+..+.. ...+.+++|+||+++|+.+ .
T Consensus 100 ~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 100 IDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC
Confidence 99988777776653 23467899999 889999888775 577889988877655432 3346789999999988654 4
Q ss_pred CCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE--EeCCeEEEEEcCCcceeeEeecCCCCCEEE
Q 001403 898 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQ 975 (1084)
Q Consensus 898 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 975 (1084)
.++.|++||+.+++............+.. ......++|+||++++++ +.++.+.+||..+++...... +...+.+
T Consensus 177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~ 253 (300)
T TIGR03866 177 IGGTVSVIDVATRKVIKKITFEIPGVHPE-AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQ 253 (300)
T ss_pred CCCEEEEEEcCcceeeeeeeecccccccc-cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcce
Confidence 69999999999876433211111110100 112457899999998655 356789999999888776543 3457899
Q ss_pred EEEccCCCEEEEE-eCCCcEEEEEcCCCceeEEec
Q 001403 976 ATFSCDCRMVFTS-FVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 976 l~fs~dg~~l~t~-~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
++|+|+|++|+++ +.+|.|++||+.+++.+.++.
T Consensus 254 ~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 254 LAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 9999999999886 468999999999999988876
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-23 Score=209.99 Aligned_cols=282 Identities=13% Similarity=0.174 Sum_probs=224.5
Q ss_pred ccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC
Q 001403 725 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 804 (1084)
Q Consensus 725 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 804 (1084)
|..-|.++++|...+++++++. |.|+|||+..... ...+.. +........++++.+.|
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~-------------------k~Pvsq--Ldcl~rdnyiRSckL~p 475 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN-------------------KSPVSQ--LDCLNRDNYIRSCKLLP 475 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC-------------------CCcccc--ccccCcccceeeeEecC
Confidence 7788899999999998888875 5899999864311 000111 11112567889999999
Q ss_pred CCCEEEEEeC-CeEEEEEcCCceeE--EEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCE
Q 001403 805 NDAYLFSASG-GVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV 881 (1084)
Q Consensus 805 dg~~l~~~sd-g~i~vwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V 881 (1084)
||+.|++|+. .++.|||+...... ..+........+++.+| |.++.+++..||.|.|||+.+..++..|+||.+.+
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGa 554 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 554 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCc
Confidence 9999999985 78999999865443 33444445678899999 89999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcc
Q 001403 882 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELT 960 (1084)
Q Consensus 882 ~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~ 960 (1084)
.|+.+++||..|-||+-|.+|+-||+..+.. ++..+ +...|.++..+|.+.+||+| .++.+.|......+
T Consensus 555 scIdis~dGtklWTGGlDntvRcWDlregrq-----lqqhd----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQ-----LQQHD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred eeEEecCCCceeecCCCccceeehhhhhhhh-----hhhhh----hhhhheecccCCCccceeeecccCcEEEEecCCcc
Confidence 9999999999999999999999999998542 22211 12368999999999999998 56778888876444
Q ss_pred eeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEE
Q 001403 961 CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1040 (1084)
Q Consensus 961 ~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~ 1040 (1084)
. .+ +..|.+.|.++.|++.|+++++.+.|..+-.|...-|.-+.... -.+.|.++.|+++ +.++|+
T Consensus 626 k-yq-lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---------E~SsVlsCDIS~d---dkyIVT 691 (705)
T KOG0639|consen 626 K-YQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVLSCDISFD---DKYIVT 691 (705)
T ss_pred c-ee-ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc---------ccCcceeeeeccC---ceEEEe
Confidence 3 22 34589999999999999999999999999999999997664433 1445777777765 689999
Q ss_pred EeCCCcEEEEcC
Q 001403 1041 GLTNGEVYVIEP 1052 (1084)
Q Consensus 1041 ~~~dg~v~vw~~ 1052 (1084)
|+.|..-.||++
T Consensus 692 GSGdkkATVYeV 703 (705)
T KOG0639|consen 692 GSGDKKATVYEV 703 (705)
T ss_pred cCCCcceEEEEE
Confidence 999998888875
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=204.63 Aligned_cols=292 Identities=13% Similarity=0.177 Sum_probs=227.8
Q ss_pred cccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEE
Q 001403 655 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 734 (1084)
Q Consensus 655 ~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 734 (1084)
..+.|+++.|+| ....+++++.|+++++|.++.........+.+. ..+|.+..|
T Consensus 212 s~~~I~sv~FHp----------------------~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~----~fPi~~a~f 265 (514)
T KOG2055|consen 212 SHGGITSVQFHP----------------------TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE----KFPIQKAEF 265 (514)
T ss_pred CcCCceEEEecC----------------------CCceEEEecCCCcEEEEEecCccChhheeeeec----cCccceeee
Confidence 345688888874 456688999999999999886666555555443 378999999
Q ss_pred ecCCC-eEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe
Q 001403 735 NNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 813 (1084)
Q Consensus 735 s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s 813 (1084)
.|+|. .+++++....++.||+...+.... ..+.+ -....+..+.+||++.+|+..+
T Consensus 266 ~p~G~~~i~~s~rrky~ysyDle~ak~~k~----------------------~~~~g-~e~~~~e~FeVShd~~fia~~G 322 (514)
T KOG2055|consen 266 APNGHSVIFTSGRRKYLYSYDLETAKVTKL----------------------KPPYG-VEEKSMERFEVSHDSNFIAIAG 322 (514)
T ss_pred cCCCceEEEecccceEEEEeeccccccccc----------------------cCCCC-cccchhheeEecCCCCeEEEcc
Confidence 99999 888888888889888865443111 11111 1245678899999999999988
Q ss_pred -CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccc-CEEEEEEcCCCC
Q 001403 814 -GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-RVTGLVFSDALN 891 (1084)
Q Consensus 814 -dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~-~V~~l~~spd~~ 891 (1084)
.|.|.+....|++.+.+++ -.+.|..++|+. +++.|.+.+.+|.|.+||+....++.++....+ .-++++.|+++.
T Consensus 323 ~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ 400 (514)
T KOG2055|consen 323 NNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS 400 (514)
T ss_pred cCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc
Confidence 6999999999999998887 567899999998 888888888999999999999999888874322 335688889999
Q ss_pred EEEEEeCCCcEEEEeCCCCcee-eeeeeecCCCCccCCCCceEEEEccCCCEEEEE---eCCeEEEEEcCCcceeeEeec
Q 001403 892 ILVSSGGDAQIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWFP 967 (1084)
Q Consensus 892 ~l~s~s~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~---~d~~i~vwd~~~~~~~~~~~~ 967 (1084)
+||+|+..|.|.|||..+.... ..+.+.....-. ..|++++|++|+++||.+ ..+.+++-.+.+......|..
T Consensus 401 ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~ 477 (514)
T KOG2055|consen 401 YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPT 477 (514)
T ss_pred eEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCC
Confidence 9999999999999997763211 112333333333 379999999999999984 567899999988777766554
Q ss_pred CC--CCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001403 968 IS--SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 968 ~h--~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~ 1000 (1084)
.. -+.|+|++|||.|.+|+.|..+|.|.+|.+.
T Consensus 478 ~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 478 SNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 32 5689999999999999999999999999874
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=206.34 Aligned_cols=254 Identities=16% Similarity=0.243 Sum_probs=204.6
Q ss_pred ccCCCCceEEEEcCCCceeee-ecccccCccccccceEEEEEcCCcccccee-------eeecCCCCCeEEEEEcC-CCC
Q 001403 331 IEGSSSPMSMDFHPVQHTLLL-GLWDVNSGQKLFIRNFKVWDIGACSMLFKT-------ALVRDPGVSVNRVVWSP-DGS 401 (1084)
Q Consensus 331 ~~h~~~V~~v~~spdg~~las-~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~-------~~~~~h~~~V~~v~fsp-dg~ 401 (1084)
-.|.++|..+..-|....+++ +... +.|.|||..+....... ..+.||...=..++|++ ..-
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~---------~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g 191 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSS---------GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG 191 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCC---------CCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce
Confidence 468889999999997766655 3333 89999999764333322 15889998888899999 455
Q ss_pred EEEEEeCCCEEEEEEccCCcc----ccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC--CCceeeEecc
Q 001403 402 LLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFEG 475 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~----~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~--~g~~~~~~~~ 475 (1084)
+|++++.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.|||++ +.++.....+
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~~~~a 270 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSHSVKA 270 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcccccc
Confidence 889999999999999985443 5566678899999999999998877 78999999999999999 5566678899
Q ss_pred CCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc-eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecC
Q 001403 476 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 554 (1084)
Q Consensus 476 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~ 554 (1084)
|.++|.+++|+|.. +..||+||.|++|++||+++... ...+..|...|..+.|||....+++.+. .++.+.+||+
T Consensus 271 h~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~vWDl 346 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLNVWDL 346 (422)
T ss_pred cCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEEEEec
Confidence 99999999999874 58999999999999999998654 6688999999999999997765544432 2778999998
Q ss_pred CCce--------------EeeeeeccccccCceEEEEEcCCCCEEEE-EECCCcEEEEECCC
Q 001403 555 SEGA--------------IKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK 601 (1084)
Q Consensus 555 ~~~~--------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~ 601 (1084)
..-. ++..-.||. ..|..+.|+|+..++++ .++|+.+.||.+..
T Consensus 347 s~ig~eq~~eda~dgppEllF~HgGH~---~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 347 SRIGEEQSPEDAEDGPPELLFIHGGHT---AKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccccChhhhccCCcceeEEecCcc---cccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 7422 223344555 89999999999887655 78999999999863
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=193.34 Aligned_cols=282 Identities=15% Similarity=0.223 Sum_probs=214.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001403 391 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 470 (1084)
Q Consensus 391 V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~ 470 (1084)
..|+.||+.|.+||+|+.||.|.|||+.|...-+ .+.+|..+|++++||+||+ .|+|++.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976444 6889999999999999999 8999999999999999999999
Q ss_pred eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCC----eEEEEEEcCCCCEEEEEeeCCCCC
Q 001403 471 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----GCTRMAYSANGRRLFSCGTSKEGE 546 (1084)
Q Consensus 471 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----~i~~~~~s~d~~~l~~~~~~~~~~ 546 (1084)
+.++ ...+|..+.|+|......+++--... -.+-++.............+ ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~s-p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEES-PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecCC-cEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9987 78899999999987765655544333 34444444222221111111 1223468899999999975 7
Q ss_pred eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC-------eEE--EEEcCCCCCCCc
Q 001403 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------QLL--TTIDAGGGLPEN 617 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v 617 (1084)
|.+.++|..+-+++..++-.. ...|..+.++..|+.++.-+.|+.||.|+...- +.. +.++.--....-
T Consensus 175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 789999999999988876544 357899999999999999999999999997631 111 111100011124
Q ss_pred ceEEEecCCCEEEEEEC-CCeEEEEEcCCCCeeeeccccc-cceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccce
Q 001403 618 PRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 695 (1084)
Q Consensus 618 ~~v~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 695 (1084)
.+++|+.+|.+++.++. ...++||....|..+..+.|.. .....+.+.|.... +++
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~----------------------i~s 310 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPI----------------------IAS 310 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceee----------------------eee
Confidence 67999999999988875 4689999999999999998877 45666667654433 233
Q ss_pred ecccCccccccce
Q 001403 696 VEAENKSEVEKPL 708 (1084)
Q Consensus 696 ~~~d~~i~~w~~~ 708 (1084)
. ..|.+++|...
T Consensus 311 i-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 311 I-ASGVVYIWAVV 322 (405)
T ss_pred c-cCCceEEEEee
Confidence 3 55788888854
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=205.26 Aligned_cols=245 Identities=16% Similarity=0.184 Sum_probs=204.3
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 444 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d 444 (1084)
..+.+|.+..+....+..++ .++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+. .+.+|-..|+|+.|+.|
T Consensus 61 p~l~vw~i~k~~~~~q~~v~---Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~d 134 (476)
T KOG0646|consen 61 PLLHVWEILKKDQVVQYIVL---PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDD 134 (476)
T ss_pred ccccccccCchhhhhhhccc---ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCC
Confidence 68899999877666544433 3589999999999999999999999999999998777 67899999999999999
Q ss_pred CCcEEEEEEeCCCcEEEEECC---------CCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE
Q 001403 445 CKQISVITCGDDKTIKVWDAV---------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 515 (1084)
Q Consensus 445 ~~~l~l~s~~~d~~i~vwd~~---------~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 515 (1084)
|. +++|||.||.|.+|++. +-++++.|..|.-+|+++...+.+-..+++|+|.|.++++||+..+..+.
T Consensus 135 gs--~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl 212 (476)
T KOG0646|consen 135 GS--HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL 212 (476)
T ss_pred Cc--EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE
Confidence 99 89999999999999763 34567899999999999988766566799999999999999999987777
Q ss_pred eecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC----------------ceEeeeeeccccccCceEEEEEc
Q 001403 516 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE----------------GAIKRTYQGLQLQHNSVSVVHFD 579 (1084)
Q Consensus 516 ~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~----------------~~~~~~~~~~~~~~~~v~~~~~s 579 (1084)
.+..+ ..+.+++.+|-++.+++|+. +|.|.+.++.. +..+..+.||.. ...|+|++++
T Consensus 213 ti~fp-~si~av~lDpae~~~yiGt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~-~~~ITcLais 286 (476)
T KOG0646|consen 213 TITFP-SSIKAVALDPAERVVYIGTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN-ESAITCLAIS 286 (476)
T ss_pred EEecC-CcceeEEEcccccEEEecCC----cceEEeeehhcCCcccccccccccccccceeeeeccccC-CcceeEEEEe
Confidence 66544 47899999999999999986 55677665432 234556677771 1389999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecC
Q 001403 580 TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 625 (1084)
Q Consensus 580 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 625 (1084)
-||..|++|+.||.++|||+.+.++++++... ..+|+.+.+.|-
T Consensus 287 ~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 287 TDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred cCccEEEeeCCCCCEEEEecchHHHHHHHhhh--ccccceeEeecc
Confidence 99999999999999999999999999888732 235888888663
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=200.06 Aligned_cols=288 Identities=13% Similarity=0.201 Sum_probs=234.9
Q ss_pred CCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCC-EEEEEeCCCEE
Q 001403 334 SSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLGVAYSKHIV 412 (1084)
Q Consensus 334 ~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~-~las~~~dg~v 412 (1084)
.+.|++|.|+|..+.|.++..| ++++||.+.......... +.--..+|.+.+|.|+|. .+++++.....
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d---------~~lrifqvDGk~N~~lqS-~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ 282 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLD---------GTLRIFQVDGKVNPKLQS-IHLEKFPIQKAEFAPNGHSVIFTSGRRKYL 282 (514)
T ss_pred cCCceEEEecCCCceEEEecCC---------CcEEEEEecCccChhhee-eeeccCccceeeecCCCceEEEecccceEE
Confidence 3589999999999999999888 999999997644433222 222357999999999999 89999999999
Q ss_pred EEEEccCCccccceeeeeccc-ccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCC
Q 001403 413 QLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 491 (1084)
Q Consensus 413 ~iwd~~~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~ 491 (1084)
+.||+.+++..+ +..+.++. ..+.....|++++ +|+..|..|.|.+-...+++.+.+++ -.+.|..++|+ .++
T Consensus 283 ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fs--Sds 356 (514)
T KOG2055|consen 283 YSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFS--SDS 356 (514)
T ss_pred EEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEe--cCC
Confidence 999999987543 33444554 3577888999999 89999999999999999999998887 56789999995 577
Q ss_pred cEEEEEecCCeEEEEECCCCCceEeecCCCC-eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC------ceEeeeee
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------GAIKRTYQ 564 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~------~~~~~~~~ 564 (1084)
..|++.+.+|.|.+||++.......+...+. .-++++.+++|.++|+|+. .|.|.|||.++ .+++..+.
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~PkPik~~d 432 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTNPKPIKTVD 432 (514)
T ss_pred cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCCCCchhhhh
Confidence 9999999999999999999988887776654 4578899999999999985 77899999654 34455555
Q ss_pred ccccccCceEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeEEEEEcCC-CCCCCcceEEEecCCCEEEEEECCCeEEEE
Q 001403 565 GLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIANENRIKIL 641 (1084)
Q Consensus 565 ~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 641 (1084)
... ..|+++.|++|...|+.+| .+..+++-.+.+.....-++.. .....|.|++|+|.+.++|+|..+|.+.+|
T Consensus 433 NLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 433 NLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLF 509 (514)
T ss_pred hhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeE
Confidence 444 6899999999999998877 5678999988876666555432 334568999999999999999999999999
Q ss_pred EcC
Q 001403 642 ETP 644 (1084)
Q Consensus 642 d~~ 644 (1084)
.+.
T Consensus 510 kL~ 512 (514)
T KOG2055|consen 510 KLH 512 (514)
T ss_pred eec
Confidence 864
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=205.55 Aligned_cols=290 Identities=11% Similarity=0.064 Sum_probs=209.2
Q ss_pred ceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE-EEEeCCCEEEEEEccCCccccc
Q 001403 347 HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHGGSDARQ 425 (1084)
Q Consensus 347 ~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l-as~~~dg~v~iwd~~~~~~~~~ 425 (1084)
..++++..| +.+++||+.++..... +.++ ..+.+++|+|||+.+ ++++.++.|++||..+++...
T Consensus 2 ~~~~s~~~d---------~~v~~~d~~t~~~~~~---~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~- 67 (300)
T TIGR03866 2 KAYVSNEKD---------NTISVIDTATLEVTRT---FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG- 67 (300)
T ss_pred cEEEEecCC---------CEEEEEECCCCceEEE---EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE-
Confidence 456676666 9999999987654332 3334 346789999999987 566788999999999886544
Q ss_pred eeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCC-eEE
Q 001403 426 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG-KIK 504 (1084)
Q Consensus 426 ~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-~i~ 504 (1084)
.+..+.. +..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.+++|+ +++.++++++.++ .+.
T Consensus 68 --~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~--~dg~~l~~~~~~~~~~~ 140 (300)
T TIGR03866 68 --TLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS--PDGKIVVNTSETTNMAH 140 (300)
T ss_pred --eccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC--CCCCEEEEEecCCCeEE
Confidence 3333433 567899999984 344556789999999999888877763 3346778884 4778888888765 567
Q ss_pred EEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccc----ccCceEEEEEcC
Q 001403 505 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDT 580 (1084)
Q Consensus 505 iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~~~v~~~~~s~ 580 (1084)
+||..+......... ......++|+|+|+++++++. .++.|.+||+.+++.+..+..+.. .......++|+|
T Consensus 141 ~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 216 (300)
T TIGR03866 141 FIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK 216 (300)
T ss_pred EEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC
Confidence 789877655443322 234567899999998876542 256799999999988776653210 011235688999
Q ss_pred CCCEEEE-EECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEE-ECCCeEEEEEcCCCCeeeeccccccc
Q 001403 581 AKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDN 658 (1084)
Q Consensus 581 ~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~ 658 (1084)
+++++++ .+.++.+.+||..+++....+.... .+.+++|+|+|++|+++ ..++.|.+||+.+++.+..+... ..
T Consensus 217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~ 292 (300)
T TIGR03866 217 DGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQ---RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RL 292 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCC---CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cc
Confidence 9998655 4556789999999988876654322 47899999999999886 45899999999999888877653 33
Q ss_pred eeEEEEc
Q 001403 659 LRKLSVN 665 (1084)
Q Consensus 659 i~~~~~~ 665 (1084)
.+.++++
T Consensus 293 ~~~~~~~ 299 (300)
T TIGR03866 293 PWGVVVR 299 (300)
T ss_pred cceeEeC
Confidence 3555554
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=200.85 Aligned_cols=285 Identities=16% Similarity=0.208 Sum_probs=228.0
Q ss_pred ceEEEEEcCCccccceeeeecCC-CCC-eEEEEEcCCCCEEEEEe-CCCEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKTALVRDP-GVS-VNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h-~~~-V~~v~fspdg~~las~~-~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
.++.+||+.++....+. ++. ... -.+-+. .+.|++++. ....+.+|.+.......+. .--.++|.+++-
T Consensus 18 ~~~~~~dl~TGt~~~~y---kg~~~a~~~sl~~l--~~~yllsaq~~rp~l~vw~i~k~~~~~q~---~v~Pg~v~al~s 89 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQY---KGSYLAQAASLTAL--NNEYLLSAQLKRPLLHVWEILKKDQVVQY---IVLPGPVHALAS 89 (476)
T ss_pred cceeEEecCCCceeEEe---cCcccccchhhhhh--chhheeeecccCccccccccCchhhhhhh---cccccceeeeec
Confidence 56899999887766553 221 111 111112 236777774 3457999999876544422 234578999999
Q ss_pred ecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECC---------CCC
Q 001403 442 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD---------SLG 512 (1084)
Q Consensus 442 s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~---------~~~ 512 (1084)
+|+|. +++.|+..+.|++|.+.+|..+..+.+|-..|+++.| +.||.+++||+.||.|.+|++. +..
T Consensus 90 ~n~G~--~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f--s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~ 165 (476)
T KOG0646|consen 90 SNLGY--FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF--SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVK 165 (476)
T ss_pred CCCce--EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE--eCCCcEEEecCCCccEEEEEEEeecccccCCCcc
Confidence 99998 7888879999999999999999999999999999999 6688999999999999999763 234
Q ss_pred ceEeecCCCCeEEEEEEcCC--CCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEEC
Q 001403 513 ARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 590 (1084)
Q Consensus 513 ~~~~~~~~~~~i~~~~~s~d--~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 590 (1084)
+...+..|.-+|+.+...+- ..++++++. |.++++||+..|..+.++.... .+.+++.+|.+..+++|++
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~----D~t~k~wdlS~g~LLlti~fp~----si~av~lDpae~~~yiGt~ 237 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTNARLYTASE----DRTIKLWDLSLGVLLLTITFPS----SIKAVALDPAERVVYIGTE 237 (476)
T ss_pred ceeeeccCcceeEEEEecCCCccceEEEecC----CceEEEEEeccceeeEEEecCC----cceeEEEcccccEEEecCC
Confidence 56778889999999887765 457888876 7789999999999998887655 8999999999999999999
Q ss_pred CCcEEEEECCC----------------CeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccc
Q 001403 591 DHVIKIWDMNK----------------VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 654 (1084)
Q Consensus 591 dg~i~iwd~~~----------------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 654 (1084)
+|.|.+.++.. +..+..+.+|.....|+|++++-||..|++|+.||.+.|||+.+.++++++..
T Consensus 238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~ 317 (476)
T KOG0646|consen 238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT 317 (476)
T ss_pred cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh
Confidence 99999987653 22344555665556899999999999999999999999999999999999888
Q ss_pred cccceeEEEEcCCCc
Q 001403 655 LSDNLRKLSVNPIST 669 (1084)
Q Consensus 655 ~~~~i~~~~~~p~~~ 669 (1084)
..++|+.+.+.|...
T Consensus 318 ~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 318 SKGPVTNLQINPLER 332 (476)
T ss_pred hccccceeEeecccc
Confidence 888999999876533
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.6e-22 Score=201.66 Aligned_cols=251 Identities=20% Similarity=0.334 Sum_probs=201.6
Q ss_pred CCCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEccCCccc-------cceeeeecccccEeEEEeecCCCcEEEEEEeCCC
Q 001403 386 DPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDA-------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 457 (1084)
Q Consensus 386 ~h~~~V~~v~fspd-g~~las~~~dg~v~iwd~~~~~~~-------~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~ 457 (1084)
.|.+.|..+.+-|. ...+|+.+..+.|.|||...-... ++...|.+|.+.=+.++|++.... .+++++.|+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~d~ 200 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSDDH 200 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccCCC
Confidence 48999999999995 556677788899999998753322 233378899998888999998776 799999999
Q ss_pred cEEEEECCCCc-------eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECC--CCCceEeecCCCCeEEEEE
Q 001403 458 TIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--SLGARVDYDAPGLGCTRMA 528 (1084)
Q Consensus 458 ~i~vwd~~~g~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~i~~~~ 528 (1084)
+|++||+.... ....+.+|...|..++|++... .++++++.|+.+.|||.+ +.+.......|...+.|++
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~ 279 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA 279 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence 99999987433 2466789999999999998754 689999999999999999 4556667788899999999
Q ss_pred EcCCCC-EEEEEeeCCCCCeeEEEecCCC-ceEeeeeeccccccCceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEE
Q 001403 529 YSANGR-RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLL 605 (1084)
Q Consensus 529 ~s~d~~-~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~ 605 (1084)
|+|-+. .||+++. +++|.+||+++ .+.+..+.+|. ..|..+.|+|.. ..|++++.|+.+.|||+..-...
T Consensus 280 fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~---dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 280 FNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHE---DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred eCCCCCceEEeccC----CCcEEEeechhcccCceeccCCC---cceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 999555 5566654 77799999987 45677888888 999999999985 56677889999999998752222
Q ss_pred ------------EEEcCCCCCCCcceEEEecCCC-EEEEEECCCeEEEEEcCC
Q 001403 606 ------------TTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPE 645 (1084)
Q Consensus 606 ------------~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~ 645 (1084)
-.+...++...|..+.|+|+.. .+++++.|+.+.||.+..
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 1244446666799999999765 577788899999999874
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.6e-21 Score=184.51 Aligned_cols=271 Identities=14% Similarity=0.105 Sum_probs=212.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
....|+.+.|+|.+..|++++-||++++||+...+... .-.|..++.+++|.++.. +++|+.||.|+.+|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 57899999999999999999999999999999874332 236899999999998765 89999999999999998
Q ss_pred CceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001403 467 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 546 (1084)
Q Consensus 467 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 546 (1084)
+... .+..|..+|.++...+.. ..+++|+.|++|++||.+.......+.... .|.++.. .|+.|++++. +
T Consensus 85 ~~~~-~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~----~ 154 (323)
T KOG1036|consen 85 GNED-QIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS----D 154 (323)
T ss_pred Ccce-eeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec----C
Confidence 8764 456699999999986533 589999999999999998744444443333 6766664 4667777665 5
Q ss_pred eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC----eEEEEEcCCCC-------CC
Q 001403 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGG-------LP 615 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~~ 615 (1084)
..+.+||+++........... -...++++++-|++.-+++++-||.|.+=.++.. +....+..|.. .-
T Consensus 155 r~v~iyDLRn~~~~~q~reS~-lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESS-LKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred ceEEEEEcccccchhhhcccc-ceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 669999998765433211111 1257899999999999999999999988666554 33334444321 12
Q ss_pred CcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeec
Q 001403 616 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 675 (1084)
Q Consensus 616 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~ 675 (1084)
+|++++|+|-...||+|+.||.|.+||..+.+.+..+......|..++|+.++..+++++
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 588999999999999999999999999999999988888888899999997777666554
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-21 Score=186.04 Aligned_cols=298 Identities=14% Similarity=0.210 Sum_probs=222.7
Q ss_pred CCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCC
Q 001403 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 400 (1084)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg 400 (1084)
++|..+..+|.... ..|+.||+.|.+||+|..| |.|.|||+.|.... .++.+|..+|++++||+||
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~G~~lAvGc~n---------G~vvI~D~~T~~ia---r~lsaH~~pi~sl~WS~dg 77 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRWGDYLAVGCAN---------GRVVIYDFDTFRIA---RMLSAHVRPITSLCWSRDG 77 (405)
T ss_pred cChHhhceeccCCc--cceEEeccCcceeeeeccC---------CcEEEEEccccchh---hhhhccccceeEEEecCCC
Confidence 55666667776442 7899999999999999988 99999999886532 3478899999999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001403 401 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 480 (1084)
Q Consensus 401 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v 480 (1084)
+.|++++.|..|.+||+..|.+++++ ....+|+.+.|.|-.++..+++-- +..-.+-++..+....--....+..
T Consensus 78 r~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~h~~Lp~d~d~dl 152 (405)
T KOG1273|consen 78 RKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPKHSVLPKDDDGDL 152 (405)
T ss_pred CEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCceeeccCCCcccc
Confidence 99999999999999999999877643 256789999999987764444433 4444555554432111001111111
Q ss_pred E----EEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCC-CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCC
Q 001403 481 Y----SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 555 (1084)
Q Consensus 481 ~----~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~ 555 (1084)
. +..| +..|+++++|...|.+.+++..+.+....+.... ..|..+.++..|++++..+. +..|+.|+++
T Consensus 153 n~sas~~~f--dr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvIR~ye~~ 226 (405)
T KOG1273|consen 153 NSSASHGVF--DRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVIRTYEIS 226 (405)
T ss_pred ccccccccc--cCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceEEEEehh
Confidence 1 1123 5577899999999999999999998887776665 68999999999999999876 7779999876
Q ss_pred C-------ceE--eeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecC
Q 001403 556 E-------GAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 625 (1084)
Q Consensus 556 ~-------~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 625 (1084)
. ++. .+.++.. .....-.+++|+.+|.++++++ ....++||....|.+++.+.+..+ .....+.|+|-
T Consensus 227 di~~~~r~~e~e~~~K~qDv-VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~DV~whp~ 304 (405)
T KOG1273|consen 227 DIDDEGRDGEVEPEHKLQDV-VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLDVNWHPV 304 (405)
T ss_pred hhcccCccCCcChhHHHHHH-HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheeecccccc
Confidence 2 111 1222111 1123457889999999998876 456799999999999999987654 24678889998
Q ss_pred CCEEEEEECCCeEEEEEcCCC
Q 001403 626 GTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 626 ~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
...+++. ..|.+++|.....
T Consensus 305 rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 305 RPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred eeeeeec-cCCceEEEEeecc
Confidence 8888877 6799999987643
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.8e-23 Score=218.65 Aligned_cols=246 Identities=18% Similarity=0.311 Sum_probs=218.2
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 444 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d 444 (1084)
-.++|||... +..|...|.|+..-..++.+++|+.|..+-+|.+.....+- .+.+|..+|.++.|+++
T Consensus 14 t~Lr~~~~~~---------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~ 81 (825)
T KOG0267|consen 14 TKLRVWDTRE---------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTS 81 (825)
T ss_pred eccccccchh---------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcc
Confidence 4456777643 33488899999987788999999999999999987654443 68899999999999999
Q ss_pred CCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeE
Q 001403 445 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGC 524 (1084)
Q Consensus 445 ~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i 524 (1084)
.. +|++|+.+|+|++||++.++.++++.+|...+.++.|+| -+.+.++|+.|+.+++||.+..++...+..|...+
T Consensus 82 E~--LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv 157 (825)
T KOG0267|consen 82 ER--LLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVV 157 (825)
T ss_pred hh--hhcccccCCceeeeehhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCccee
Confidence 88 899999999999999999999999999999999999966 55789999999999999999999999999999899
Q ss_pred EEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeE
Q 001403 525 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 604 (1084)
Q Consensus 525 ~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 604 (1084)
..+.|+|+|++++.++. +..+.+||...|+....|.+|. +.+.++.|+|..-.++.|+.|+++++||+++.+.
T Consensus 158 ~~l~lsP~Gr~v~~g~e----d~tvki~d~~agk~~~ef~~~e---~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 158 DVLRLSPDGRWVASGGE----DNTVKIWDLTAGKLSKEFKSHE---GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV 230 (825)
T ss_pred EEEeecCCCceeeccCC----cceeeeeccccccccccccccc---ccccccccCchhhhhccCCCCceeeeeccceeEE
Confidence 99999999999999875 6789999999999999999998 8999999999988889999999999999999888
Q ss_pred EEEEcCCCCCCCcceEEEecCCCEEEEEECC
Q 001403 605 LTTIDAGGGLPENPRICFNKNGTLLAVIANE 635 (1084)
Q Consensus 605 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 635 (1084)
+...... ...|.+.+|+|+++.+++|...
T Consensus 231 I~s~~~~--~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 231 ISSGKPE--TDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred eeccCCc--cCCceeeeecCCceeeecCchh
Confidence 8776654 4468999999999999888654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=202.88 Aligned_cols=322 Identities=13% Similarity=0.168 Sum_probs=236.0
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
++.||++.|.++...|.|.+||+|+.||+|+||.+.||.+++.. ...+.|.|++|+|.+..-+|+.+- ...+.|-
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~----~~d~~I~~vaw~P~~~~~vLAvA~-~~~~~iv 469 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV----QFDSEIRSVAWNPLSDLCVLAVAV-GECVLIV 469 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE----eecceeEEEEecCCCCceeEEEEe-cCceEEe
Confidence 47899999999999999999999999999999999999988744 234479999999998864455444 4447777
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEE----ecCCeEEEEECCCCC----ceEeecCCCCeEEEEEEcCCCC
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----SVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSANGR 534 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----s~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~s~d~~ 534 (1084)
+..=|..+..-. . ...|+++ ..++.+..|.-.... .......+...|..+.|+.+|.
T Consensus 470 np~~G~~~e~~~--t-------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD 534 (733)
T KOG0650|consen 470 NPIFGDRLEVGP--T-------------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD 534 (733)
T ss_pred Cccccchhhhcc--h-------------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc
Confidence 765553221110 0 0111111 234566678654222 2334456777999999999999
Q ss_pred EEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCC
Q 001403 535 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 614 (1084)
Q Consensus 535 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 614 (1084)
+|++...++ +...|.|.++........|.... +.+.++.|+|...++++++. ..|+|||+..+++++.+... .
T Consensus 535 YlatV~~~~-~~~~VliHQLSK~~sQ~PF~ksk---G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg--~ 607 (733)
T KOG0650|consen 535 YLATVMPDS-GNKSVLIHQLSKRKSQSPFRKSK---GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG--S 607 (733)
T ss_pred eEEEeccCC-CcceEEEEecccccccCchhhcC---CceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC--C
Confidence 999987644 36679999988776665555444 78999999999999998875 68999999988877776533 3
Q ss_pred CCcceEEEecCCCEEEEEECCCeEEEEEcCCC-CeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCcc
Q 001403 615 PENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 693 (1084)
Q Consensus 615 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l 693 (1084)
..|..++.+|.|..|++++.|+.+..+|+.-. ++.+.++.|...++++++++. -.++
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r----------------------yPLf 665 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR----------------------YPLF 665 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc----------------------ccee
Confidence 35889999999999999999999999999855 788899999999999999854 3456
Q ss_pred ceecccCccccccceeecCccceeeccCC---ccccc----eEEEEEEecCCCeEEEeecCCceEEe
Q 001403 694 ISVEAENKSEVEKPLFARPSECQSLLLPS---KVKAN----KISRLTYNNGGQAIFALASNGVHLMW 753 (1084)
Q Consensus 694 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~---~~~~~----~i~~l~~s~~g~~l~~~~~dg~i~vw 753 (1084)
++++.||++.++.-..........+..|. .+|.. .|....|+|....|++++.||+|++|
T Consensus 666 as~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 666 ASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 66677777766653322221111111111 23443 38888999999999999999999987
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.4e-21 Score=199.40 Aligned_cols=322 Identities=15% Similarity=0.231 Sum_probs=238.6
Q ss_pred EeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC--EEEEEECCC
Q 001403 559 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLAVIANEN 636 (1084)
Q Consensus 559 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg 636 (1084)
+...+.+|. +.|.++...|.|.+|++|+.||+|+||.+.+|.++.++...+. |.+++|+|.+. .||++...
T Consensus 392 ~~lvyrGHt---g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~---I~~vaw~P~~~~~vLAvA~~~- 464 (733)
T KOG0650|consen 392 CALVYRGHT---GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSE---IRSVAWNPLSDLCVLAVAVGE- 464 (733)
T ss_pred eeeeEeccC---CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecce---eEEEEecCCCCceeEEEEecC-
Confidence 345677888 9999999999999999999999999999999999999987664 89999999665 45555444
Q ss_pred eEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCcccee----cccCccccccceeec-
Q 001403 637 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV----EAENKSEVEKPLFAR- 711 (1084)
Q Consensus 637 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~----~~d~~i~~w~~~~~~- 711 (1084)
.+.|.+..-|..+..-. ....++++ ..++.+-.|.-....
T Consensus 465 ~~~ivnp~~G~~~e~~~-----------------------------------t~ell~~~~~~~~p~~~~~~W~~~~~~e 509 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGP-----------------------------------TKELLASAPNESEPDAAVVTWSRASLDE 509 (733)
T ss_pred ceEEeCccccchhhhcc-----------------------------------hhhhhhcCCCccCCcccceeechhhhhh
Confidence 36666554442111100 00011111 122345556543211
Q ss_pred --CccceeeccCCccccceEEEEEEecCCCeEEEeecC---CceEEeeccCCccCcCcccceecCCeeecCCCCCccccc
Q 001403 712 --PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVN 786 (1084)
Q Consensus 712 --~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1084)
...|..+. |...|..+.|+..|.+|++...+ ..|.|+++..... ..
T Consensus 510 ~~~~v~~~I~-----~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s----------------------Q~-- 560 (733)
T KOG0650|consen 510 LEKGVCIVIK-----HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS----------------------QS-- 560 (733)
T ss_pred hccceEEEEe-----cCCccceeeeecCCceEEEeccCCCcceEEEEecccccc----------------------cC--
Confidence 11233333 67799999999999999988764 3455555543221 11
Q ss_pred cCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 001403 787 DTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 866 (1084)
Q Consensus 787 ~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~ 866 (1084)
.+ ....+.+.++.|+|...++++++...|++||+..++.+..+......|..++++| .|.-|+.|+.|+.+..||+.
T Consensus 561 PF--~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 561 PF--RKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred ch--hhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcc
Confidence 11 1256788999999999999999999999999999888888888888999999999 88888899999999999998
Q ss_pred Cc-eeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----ceeeeeeeecCCCCccC-CCCceEEEEccCC
Q 001403 867 SS-EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW----GIQTCRSLQTPDGVMTL-APSETHIQFHKDQ 940 (1084)
Q Consensus 867 ~~-~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~----~~~~~~~~~~~~~~~~~-~~~v~~~~~s~dg 940 (1084)
-+ ++.+++.-|...+++++|++.-.++++|+.||++.|+--.-. +......++.+.+|... ...|..+.|+|..
T Consensus 638 lsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~q 717 (733)
T KOG0650|consen 638 LSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQ 717 (733)
T ss_pred cCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCC
Confidence 54 677889999999999999999999999999999998853211 11123356666776542 2458889999999
Q ss_pred CEEEE-EeCCeEEEE
Q 001403 941 TRFLL-VHETHLAIY 954 (1084)
Q Consensus 941 ~~la~-~~d~~i~vw 954 (1084)
-+|.+ |.||+|++|
T Consensus 718 pWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 718 PWLFSAGADGTIRLF 732 (733)
T ss_pred ceEEecCCCceEEee
Confidence 99998 689999998
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=180.82 Aligned_cols=295 Identities=16% Similarity=0.161 Sum_probs=216.5
Q ss_pred cccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCcc---------ceeeccCCc
Q 001403 653 GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE---------CQSLLLPSK 723 (1084)
Q Consensus 653 ~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~---------~~~~~~~~~ 723 (1084)
+.|.+.|+++.+.+ ..|+++++|+.||.+.+||++.....+ |........
T Consensus 40 r~HgGsvNsL~id~---------------------tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~ 98 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDL---------------------TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHEN 98 (397)
T ss_pred ccCCCccceeeecc---------------------ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCc
Confidence 45667777777763 468999999999999999987654221 222223345
Q ss_pred cccceEEEEEEec-CCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEe
Q 001403 724 VKANKISRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 802 (1084)
Q Consensus 724 ~~~~~i~~l~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 802 (1084)
+|...|..+.|-| |...+.+++-|.+++|||.+. -+....+. -++.|.+-++
T Consensus 99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT----------------------lQ~a~~F~-----me~~VYsham 151 (397)
T KOG4283|consen 99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT----------------------LQEAVDFK-----MEGKVYSHAM 151 (397)
T ss_pred cceeeeeeeEEeeecCceeecccccceEEEeeccc----------------------ceeeEEee-----cCceeehhhc
Confidence 7888899998888 445566666798888887543 22222332 2445666666
Q ss_pred cCCC---CEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-eee------
Q 001403 803 SKND---AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVI------ 871 (1084)
Q Consensus 803 s~dg---~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~-~~~------ 871 (1084)
||-. .++|+|. +-+|++-|+.+|....++.+|.+.|.++.|+|...-.||+|+.||.|++||+... .+.
T Consensus 152 Sp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~h 231 (397)
T KOG4283|consen 152 SPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQH 231 (397)
T ss_pred ChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecc
Confidence 6632 3566666 5779999999999999999999999999999976778999999999999999753 122
Q ss_pred --------eeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEE
Q 001403 872 --------SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 943 (1084)
Q Consensus 872 --------~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 943 (1084)
+.-..|.+.|.+++|+.|+.++++++.|..+++|+..+|+.......+....... ...+. +. +.+...+
T Consensus 232 n~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~-~~~~~-~~-~~~s~vf 308 (397)
T KOG4283|consen 232 NTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT-SFAVH-IQ-SMDSDVF 308 (397)
T ss_pred cCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc-cceEE-Ee-ecccceE
Confidence 2233588999999999999999999999999999999987544332222221111 00122 33 3333333
Q ss_pred E-EEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001403 944 L-LVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 999 (1084)
Q Consensus 944 a-~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~ 999 (1084)
+ .-.++.+.++.+-.|..+..+ ..|-..|.+.+|-||=+.+.++..|+.|..|-.
T Consensus 309 v~~p~~~~lall~~~sgs~ir~l-~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 309 VLFPNDGSLALLNLLEGSFVRRL-STHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEEecCCeEEEEEccCceEEEee-ecccceeeEEeecCchhhhhccccCCccccccc
Confidence 3 346799999999999998874 578899999999999999999999999999976
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-19 Score=189.33 Aligned_cols=175 Identities=18% Similarity=0.277 Sum_probs=137.5
Q ss_pred cEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCce
Q 001403 435 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR 514 (1084)
Q Consensus 435 ~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 514 (1084)
.|..++|-|||.+++++. +..+.+||...|..+.++++|.+.|++++| +.||+.+++|+.|+.|.+|+-.....
T Consensus 14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAy--s~dGkrFASG~aDK~VI~W~~klEG~- 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAY--AKDGKRFASGSADKSVIIWTSKLEGI- 87 (1081)
T ss_pred chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEE--ccCCceeccCCCceeEEEecccccce-
Confidence 799999999999744443 456999999999999999999999999999 55889999999999999997543322
Q ss_pred EeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcE
Q 001403 515 VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 594 (1084)
Q Consensus 515 ~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 594 (1084)
.. -.|+..|.||.|+|-...|++|+-+. .-+|......... .+. ...+.+++|..||.+++.|-.+|+|
T Consensus 88 Lk-YSH~D~IQCMsFNP~~h~LasCsLsd-----FglWS~~qK~V~K-~ks----s~R~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 88 LK-YSHNDAIQCMSFNPITHQLASCSLSD-----FGLWSPEQKSVSK-HKS----SSRIICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred ee-eccCCeeeEeecCchHHHhhhcchhh-----ccccChhhhhHHh-hhh----heeEEEeeecCCCcEEEEeccCceE
Confidence 22 35777999999999999999998532 6788866543322 221 2468899999999999999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCCCcceEEEecCC
Q 001403 595 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 626 (1084)
Q Consensus 595 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 626 (1084)
.+-+....+.+..-...+...+|.+++|+|..
T Consensus 157 siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~s 188 (1081)
T KOG1538|consen 157 SIRNKNGEEKVKIERPGGSNSPIWSICWNPSS 188 (1081)
T ss_pred EeecCCCCcceEEeCCCCCCCCceEEEecCCC
Confidence 99976544444444444556679999999964
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8e-21 Score=205.89 Aligned_cols=237 Identities=17% Similarity=0.235 Sum_probs=196.1
Q ss_pred CCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCC-CEEEEEe-C
Q 001403 737 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND-AYLFSAS-G 814 (1084)
Q Consensus 737 ~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~~~s-d 814 (1084)
+.++|++++.+|.|.+||+..... ...+.. +. .|...+.++.|++-. .+|++|+ |
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~r-------------------nk~l~~--f~--EH~Rs~~~ldfh~tep~iliSGSQD 155 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIR-------------------NKLLTV--FN--EHERSANKLDFHSTEPNILISGSQD 155 (839)
T ss_pred hhhhheeecCCCcEEEEecCcccc-------------------chhhhH--hh--hhccceeeeeeccCCccEEEecCCC
Confidence 456788999999999999875210 000111 11 399999999999865 5667777 8
Q ss_pred CeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-eeeeeecccccCEEEEEEcCCCCEE
Q 001403 815 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDALNIL 893 (1084)
Q Consensus 815 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~-~~~~~l~~h~~~V~~l~~spd~~~l 893 (1084)
|.|++||+...+...++.+....|..++|+|..+..++++.+.|.+++||++.. ++...+.+|.++|.|+.|+|++.+|
T Consensus 156 g~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~l 235 (839)
T KOG0269|consen 156 GTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWL 235 (839)
T ss_pred ceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCcee
Confidence 999999999999999999988999999999988999999999999999999864 5677889999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE----EeCCeEEEEEcCCcceeeEeecCC
Q 001403 894 VSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----VHETHLAIYEAEELTCLKQWFPIS 969 (1084)
Q Consensus 894 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~----~~d~~i~vwd~~~~~~~~~~~~~h 969 (1084)
||||.|++|+|||+.+.+.....++.+.. ++..+.|-|+..+.++ +.|..|+|||+...-.....+..|
T Consensus 236 ATGGRDK~vkiWd~t~~~~~~~~tInTia-------pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH 308 (839)
T KOG0269|consen 236 ATGGRDKMVKIWDMTDSRAKPKHTINTIA-------PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH 308 (839)
T ss_pred eecCCCccEEEEeccCCCccceeEEeecc-------eeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc
Confidence 99999999999999987766655665543 5889999999876544 267889999999777777777889
Q ss_pred CCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCc
Q 001403 970 SVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLE 1003 (1084)
Q Consensus 970 ~~~v~~l~fs~-dg~~l~t~~~dg~i~vwd~~~~~ 1003 (1084)
...++.++|-. |-..|.+++.||+|..-.++.+.
T Consensus 309 ~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 309 TDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred CccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 99999999966 66789999999998877666553
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=175.41 Aligned_cols=255 Identities=12% Similarity=0.168 Sum_probs=191.3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCC-ccccceeeeecccccEeEEEeecC--CCcEEEEEEeCCCcEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 460 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~-~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~l~s~~~d~~i~ 460 (1084)
-.+|.+-|+++.|.+-|+++|+|+.|++|+|||.+.. .........+.|.+.|..+.|.+. |+ .+++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 4569999999999999999999999999999996533 234444578899999999999765 66 899999999999
Q ss_pred EEECC---------CCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE------eec-------
Q 001403 461 VWDAV---------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DYD------- 518 (1084)
Q Consensus 461 vwd~~---------~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~------~~~------- 518 (1084)
||.-. .-....++......|+.+.|.|..-|-.+++++.||++|||+........ ++.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 99741 11234567778889999999999999999999999999999865432211 111
Q ss_pred CCCCeEEEEEEcCC---CCEEEEEeeCC-CCCeeEEEecCCCc----eEeeeeeccccccCceEEEEEcCCC----CEEE
Q 001403 519 APGLGCTRMAYSAN---GRRLFSCGTSK-EGESFLVEWNESEG----AIKRTYQGLQLQHNSVSVVHFDTAK----DQIL 586 (1084)
Q Consensus 519 ~~~~~i~~~~~s~d---~~~l~~~~~~~-~~~~~i~~wd~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~ 586 (1084)
.+..+..|+.|+|. ..+|++++.+. ...+.+.||....+ ..+..+.+|. .+|+.++|.|+- ..|+
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~---dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT---DPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC---CcceeeeeccccCCceeeEE
Confidence 23447788999873 45677776431 12235777765433 2345566666 999999999973 4688
Q ss_pred EEECCCcEEEEECCCCe-----------------EEEEE-cCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 587 AAGDDHVIKIWDMNKVQ-----------------LLTTI-DAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 587 ~~~~dg~i~iwd~~~~~-----------------~~~~~-~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
+++.|| |+||++.... .+..+ ...++...|..+.|+-.|..|++.++||.+|+|...
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 899999 9999987311 11111 133445579999999999999999999999999865
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.5e-20 Score=183.46 Aligned_cols=301 Identities=15% Similarity=0.194 Sum_probs=218.7
Q ss_pred ecccCCCCceEEEEcCCCc-eeeeecccccCccccccceEEEEEcCCcc------ccceeeeecCCCCCeEEEEEcCCCC
Q 001403 329 TLIEGSSSPMSMDFHPVQH-TLLLGLWDVNSGQKLFIRNFKVWDIGACS------MLFKTALVRDPGVSVNRVVWSPDGS 401 (1084)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~-~las~~~d~~sg~~~~~~~v~iwd~~~~~------~~~~~~~~~~h~~~V~~v~fspdg~ 401 (1084)
.++.|+ +|..+.|.+++. .||+|.-| ..|+||.+.... ...-...+..|...|++|.|+|+|.
T Consensus 9 ~wH~~~-pv~s~dfq~n~~~~laT~G~D---------~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge 78 (434)
T KOG1009|consen 9 SWHDHE-PVYSVDFQKNSLNKLATAGGD---------KDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE 78 (434)
T ss_pred EecCCC-ceEEEEeccCcccceecccCc---------cceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC
Confidence 345555 999999999887 99998766 999999996432 2233456889999999999999999
Q ss_pred EEEEEeCCCEEEEEEcc--------C-----CccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 402 LLGVAYSKHIVQLYAYH--------G-----GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~--------~-----~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
.||+|+++|.|.+|... + .+.......+.+|...|..++|+||+. ++++++-|+++++||+..|.
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccce
Confidence 99999999999999876 3 222233446789999999999999999 89999999999999999999
Q ss_pred eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec-----------C--------CC----CeEE
Q 001403 469 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----------A--------PG----LGCT 525 (1084)
Q Consensus 469 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----------~--------~~----~~i~ 525 (1084)
.+..+.+|...|..++|.| -++++++-+.|...+.+.+...+...... . |. .-..
T Consensus 157 l~~~~~dh~~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 157 LLAILDDHEHYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred eEeeccccccccceeecch--hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 9999999999999999965 45789988888866666554332211110 0 00 1245
Q ss_pred EEEEcCCCCEEEEEeeCCC--C---CeeEEEecCCC-ceEeeeeeccccccCceEEEEEcC------------------C
Q 001403 526 RMAYSANGRRLFSCGTSKE--G---ESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDT------------------A 581 (1084)
Q Consensus 526 ~~~~s~d~~~l~~~~~~~~--~---~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~------------------~ 581 (1084)
.++|+|||.++++.+.--+ + .+..++++-.. .++...+.+.. .+...+.|+| .
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~---k~~lavr~~pVy~elrp~~~~~~~~~lpy 311 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK---KPALAVRFSPVYYELRPLSSEKFLFVLPY 311 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC---cceEEEEeeeeEEEecccccccccccccc
Confidence 6789999999987543110 0 22344554331 23333444433 4445555544 2
Q ss_pred CCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCe
Q 001403 582 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 648 (1084)
Q Consensus 582 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 648 (1084)
+-.++.++ ...|++||.++-.++..... -+...++.++|++||..+++.+.||...+..++..+.
T Consensus 312 rlvfaiAt-~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 312 RLVFAIAT-KNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred ceEEEEee-cceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 22344444 46799999999888776643 2344689999999999999999999988887776543
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=184.59 Aligned_cols=302 Identities=16% Similarity=0.172 Sum_probs=223.5
Q ss_pred eeecccCCCCceEEEEcCCCc--eeeeecccccCccccccceEEEEEcCCccccc-eeeeecCCCCCeEEEEEcC-CCCE
Q 001403 327 AQTLIEGSSSPMSMDFHPVQH--TLLLGLWDVNSGQKLFIRNFKVWDIGACSMLF-KTALVRDPGVSVNRVVWSP-DGSL 402 (1084)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~--~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~-~~~~~~~h~~~V~~v~fsp-dg~~ 402 (1084)
.....-|.+.|++++|+|... ++|+|..- |+|-+||+.+..... ...++..|..+|.++.|+| +-..
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~---------G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKG---------GQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCC---------CcEEEEecCCCCCccCceEEeccCCccccceEecCCChhh
Confidence 344567788999999999764 66665333 999999995333222 2235788999999999999 5678
Q ss_pred EEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce-eeEeccCCCcEE
Q 001403 403 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVY 481 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~-~~~~~~h~~~v~ 481 (1084)
+.+.+.||+|+.-|++++.. ..+..+......+..+.|+.+.. .++.+..=|...+||.+++.. ...+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 88999999999999998643 22223434556788889998888 677777777999999997765 566778999999
Q ss_pred EEeecccCCCcEEEEEecCCeEEEEECCCCCce----EeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCC--
Q 001403 482 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-- 555 (1084)
Q Consensus 482 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~-- 555 (1084)
+++++|-.. .+++|++.|++.+|||++..... .....|...|.+..|||.+-.|++.+. +..|+|||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceEEeecccc
Confidence 999988754 79999999999999999875443 345677889999999998888887765 7779999983
Q ss_pred --CceEeeeeeccccccC--ceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEE
Q 001403 556 --EGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 631 (1084)
Q Consensus 556 --~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 631 (1084)
.-.....+.....++. ...-..|.|+..++++|..-..|-|+|-..++.+..+.......-..-..|+|-+..+++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~a 481 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAA 481 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceec
Confidence 2233333332221111 234467999999999999999999999999998877654433222234579997774554
Q ss_pred -EECCCeEEEEEcCC
Q 001403 632 -IANENRIKILETPE 645 (1084)
Q Consensus 632 -~~~dg~i~iwd~~~ 645 (1084)
++..|.|+||..+.
T Consensus 482 G~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 482 GGNSSGKIYVFTNKK 496 (498)
T ss_pred cCCccceEEEEecCC
Confidence 45578898886543
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=189.22 Aligned_cols=252 Identities=15% Similarity=0.189 Sum_probs=194.1
Q ss_pred CeEEEEEcC-------CCCEEEEEeCCCEEEEEEccCCccccceeee------------------ecccccEeEEEeecC
Q 001403 390 SVNRVVWSP-------DGSLLGVAYSKHIVQLYAYHGGSDARQQLEI------------------DAHVGNVNDLAFSAP 444 (1084)
Q Consensus 390 ~V~~v~fsp-------dg~~las~~~dg~v~iwd~~~~~~~~~~~~l------------------~~h~~~V~~l~~s~d 444 (1084)
...|++|-. -|+|+|.|..|..|.|||+.--..+.+...| .+|+..|.+++|+..
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 335666633 3789999999999999998743332222222 279999999999988
Q ss_pred CCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeE
Q 001403 445 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGC 524 (1084)
Q Consensus 445 ~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i 524 (1084)
-+. +|+|||.|.+|++||+.+|++..++..|.+.|.++.|++. ...+|++|+.|++|.+.|.+..........-.+.|
T Consensus 255 ~~n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~V 332 (463)
T KOG0270|consen 255 FRN-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEV 332 (463)
T ss_pred cce-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccce
Confidence 776 8999999999999999999999999999999999999976 45899999999999999998533322222234578
Q ss_pred EEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-ceEeeeeeccccccCceEEEEEcCCCC-EEEEEECCCcEEEEECCCC
Q 001403 525 TRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV 602 (1084)
Q Consensus 525 ~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~ 602 (1084)
..++|.|.....+.++. .+|+|+-+|++. ++++.+++.|. ++|.++++++... .+++++.|+.|++|++..-
T Consensus 333 Ekv~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred EEEEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 89999998887777764 278899999987 48899999988 8999999988754 5677999999999998754
Q ss_pred eEEEEEcCCCCCCCcceEEEecCC-CEEEEEECCCeEEEEEcCCCCee
Q 001403 603 QLLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSV 649 (1084)
Q Consensus 603 ~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~ 649 (1084)
.........-......|.++.|+- -.++.|+..+.++|||+.+...+
T Consensus 407 ~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 407 SPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 432222211112234566777754 46778888889999999877544
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=192.54 Aligned_cols=288 Identities=16% Similarity=0.144 Sum_probs=202.4
Q ss_pred CCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCe
Q 001403 738 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV 816 (1084)
Q Consensus 738 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~ 816 (1084)
...|+.+..+|.|.++|.....+. ++... +.. . ..|.+.|..+.+-|....|++++ |.+
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr---------------~ee~~-lk~--~--~aH~nAifDl~wapge~~lVsasGDsT 123 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFR---------------LEERQ-LKK--P--LAHKNAIFDLKWAPGESLLVSASGDST 123 (720)
T ss_pred cceEEEecCCCceeeecchhhhcc---------------hhhhh-hcc--c--ccccceeEeeccCCCceeEEEccCCce
Confidence 344677777899999986543321 11100 111 1 14999999999999666777776 789
Q ss_pred EEEEEcCCceeEEE--EcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce-------------------------
Q 001403 817 ISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE------------------------- 869 (1084)
Q Consensus 817 i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~------------------------- 869 (1084)
+++||+++.++... +.+|.+.+.+++|.|.+...+++|+.||.|.|||+....
T Consensus 124 ~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~ 203 (720)
T KOG0321|consen 124 IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL 203 (720)
T ss_pred eeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence 99999999998877 899999999999999888999999999999999986321
Q ss_pred --eeeeecccccCEEE---EEEcCCCCEEEEEeC-CCcEEEEeCCCCceeeee---eeecCCCCccCCCCceEEEEccCC
Q 001403 870 --VISKLEGHSKRVTG---LVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCR---SLQTPDGVMTLAPSETHIQFHKDQ 940 (1084)
Q Consensus 870 --~~~~l~~h~~~V~~---l~~spd~~~l~s~s~-dg~I~iwd~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~dg 940 (1084)
.+....+|...|.+ +.+..|...||++|. |+.|+|||+......... .......+..-.-.++++.....|
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 01222345555665 666678899999988 999999999874422111 011111111112357788888888
Q ss_pred CEEEE-EeCCeEEEEEcCCccee-eEeecCCC-CC-EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCC
Q 001403 941 TRFLL-VHETHLAIYEAEELTCL-KQWFPISS-VP-ISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1016 (1084)
Q Consensus 941 ~~la~-~~d~~i~vwd~~~~~~~-~~~~~~h~-~~-v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 1016 (1084)
.+|.+ +.|+.|+.|++.+-..- ...+.++. .. -..-..|||+.+|++|+.|....+|.+.+.+.--.+. +
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l----~-- 357 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL----L-- 357 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh----h--
Confidence 88887 79999999999754432 11122331 11 1123468999999999999999999999876542222 1
Q ss_pred CCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 1017 TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 1017 ~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
+..+...+++|.|.+-..++++++|..+++|++..
T Consensus 358 ---Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 358 ---GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred ---CcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 22344557778887667889999999999999943
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-21 Score=206.14 Aligned_cols=238 Identities=12% Similarity=0.215 Sum_probs=213.5
Q ss_pred ecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 001403 329 TLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 408 (1084)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~ 408 (1084)
....|...|.++..-..++.+++|.|| ..+-+|.+........ +.+|+.+|.++.|+++..+|++|+.
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~---------~k~~L~~i~kp~~i~S---~~~hespIeSl~f~~~E~Llaagsa 90 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGED---------EKVNLWAIGKPNAITS---LTGHESPIESLTFDTSERLLAAGSA 90 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCc---------eeeccccccCCchhhe---eeccCCcceeeecCcchhhhccccc
Confidence 345788889999988888999999988 7788888876544443 7889999999999999999999999
Q ss_pred CCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeccc
Q 001403 409 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 488 (1084)
Q Consensus 409 dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~ 488 (1084)
+|+|++||++.++.++ +|.+|...+.++.|+|-+. +.++|+.|+.+++||.+...+.+.+.+|...|..+.| .
T Consensus 91 sgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~l--s 163 (825)
T KOG0267|consen 91 SGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRL--S 163 (825)
T ss_pred CCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEee--c
Confidence 9999999999987777 7889999999999999999 7899999999999999988999999999999999999 5
Q ss_pred CCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccc
Q 001403 489 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 568 (1084)
Q Consensus 489 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 568 (1084)
++|.++++++.|.++++||...++....+..|...+.++.|+|..-+++.|+. +.++.+||+++.+.+.......
T Consensus 164 P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~~~~~- 238 (825)
T KOG0267|consen 164 PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSGKPET- 238 (825)
T ss_pred CCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeeccCCcc-
Confidence 58899999999999999999999999999999999999999999999998886 7779999999988888777766
Q ss_pred ccCceEEEEEcCCCCEEEEEECCC
Q 001403 569 QHNSVSVVHFDTAKDQILAAGDDH 592 (1084)
Q Consensus 569 ~~~~v~~~~~s~~~~~l~~~~~dg 592 (1084)
..|.+.+|+|++..+++|....
T Consensus 239 --~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 239 --DGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred --CCceeeeecCCceeeecCchhh
Confidence 8899999999999988876543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-19 Score=184.43 Aligned_cols=289 Identities=14% Similarity=0.187 Sum_probs=219.1
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE--eCCCEEEEEEccCCcc-ccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~--~~dg~v~iwd~~~~~~-~~~~~~l~~h~~~V~~l~~ 441 (1084)
..+++||+...+..-... -......+.++.|+.... |+++ +.|..|++|.-..... +.....+.+. .-.|++.
T Consensus 12 d~~kl~D~s~~~~~~~~~-~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~ 87 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYV-HQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVAC 87 (673)
T ss_pred CceEEeecccccCccccc-cCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhh
Confidence 678999997644332211 011233589999998764 4444 5677889997654311 1111122222 2334444
Q ss_pred ecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCC-
Q 001403 442 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP- 520 (1084)
Q Consensus 442 s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~- 520 (1084)
..... ++++|+..+.|+|||++...+.+.+++|...|+++.+.. ...+|++++..|.|.+..+.++.....+...
T Consensus 88 ~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 88 ASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred hhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEeccCCcEEEEecccCccccceecCC
Confidence 33344 899999999999999998888889999999999999854 5579999999999999999988877777766
Q ss_pred CCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCC-EEEEEECCCcEEEEEC
Q 001403 521 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDM 599 (1084)
Q Consensus 521 ~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~ 599 (1084)
+..+.-+.|++..+.++....+ +|.|.+||+....++..+.. .|..+...++|+|.+. .|++.+.|..|.+||.
T Consensus 164 gqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~--~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~ 238 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASE--AHSAPCRGICFSPSNEALLVSVGYDKKINIYDI 238 (673)
T ss_pred CCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhh--hccCCcCcceecCCccceEEEecccceEEEeec
Confidence 4466789999999887766542 78899999988777655543 2348889999999765 5566899999999999
Q ss_pred CCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC-CeeeeccccccceeEEEEcCCCc
Q 001403 600 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPIST 669 (1084)
Q Consensus 600 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~ 669 (1084)
...+....+.... +...++|+++|.+|+.|...|.|..||+... .++..+..|...|++++|-|...
T Consensus 239 ~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~t 306 (673)
T KOG4378|consen 239 RSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSPT 306 (673)
T ss_pred ccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecce
Confidence 9887777776543 3689999999999999999999999999865 67888899999999999987653
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8e-20 Score=198.22 Aligned_cols=290 Identities=13% Similarity=0.184 Sum_probs=222.5
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCC----CCCeEEEEEcC-CCCEEEEEeCCC
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP----GVSVNRVVWSP-DGSLLGVAYSKH 410 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h----~~~V~~v~fsp-dg~~las~~~dg 410 (1084)
...++...+|-..++.+ |. ..++||.+..........+..+- .-.+..|.|+. +.++||+++..|
T Consensus 41 ~~nAIs~nr~~~qiv~A------Gr----s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG 110 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVA------GR----SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNG 110 (839)
T ss_pred ccceEeecCCcceeEEe------cc----cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCC
Confidence 55677778888777775 22 56677777543332221111011 12455678876 678999999999
Q ss_pred EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCC
Q 001403 411 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 490 (1084)
Q Consensus 411 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~ 490 (1084)
.|.+||+.....-+.+..+..|...|+++.|++.... +|++||.||+|++||++..+-..++.+....|..+.|+|..
T Consensus 111 ~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~- 188 (839)
T KOG0269|consen 111 VISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY- 188 (839)
T ss_pred cEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhceeeccCC-
Confidence 9999999873222333478899999999999998877 89999999999999999999999999999999999999875
Q ss_pred CcEEEEEecCCeEEEEECCCCC-ceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccc
Q 001403 491 IHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569 (1084)
Q Consensus 491 ~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 569 (1084)
+..++++...|.+++||++... ....+..|.+++.++.|+|++.+||+||. |..|+|||..+++......-+.
T Consensus 189 ~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~~tInT-- 262 (839)
T KOG0269|consen 189 GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPKHTINT-- 262 (839)
T ss_pred CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCccceeEEee--
Confidence 6899999999999999998754 46678999999999999999999999986 6679999998766554444433
Q ss_pred cCceEEEEEcCCCCEE-EEEE--CCCcEEEEECCCC-eEEEEEcCCCCCCCcceEEEec-CCCEEEEEECCCeEEEEEcC
Q 001403 570 HNSVSVVHFDTAKDQI-LAAG--DDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l-~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~ 644 (1084)
..++..+.|-|+..+. ++++ .|-.|+|||++.. -+..++..|. ..+..++|.. |...+.+++.||++..-..+
T Consensus 263 iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~--~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 263 IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT--DSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred cceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC--ccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 4689999999987654 4443 6889999999764 3445566554 4578888876 56678888888887665544
Q ss_pred C
Q 001403 645 E 645 (1084)
Q Consensus 645 ~ 645 (1084)
+
T Consensus 341 n 341 (839)
T KOG0269|consen 341 N 341 (839)
T ss_pred c
Confidence 3
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-19 Score=183.24 Aligned_cols=293 Identities=16% Similarity=0.201 Sum_probs=215.3
Q ss_pred EEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEE--ECCCeEEEEEcCCCCeeeeccccccceeEEE
Q 001403 586 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKLS 663 (1084)
Q Consensus 586 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 663 (1084)
.+++....+++||.........+..+...+.+.++.|+.... |+++ +.|..+++|.-..... .
T Consensus 6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~--~------------ 70 (673)
T KOG4378|consen 6 HVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTP--E------------ 70 (673)
T ss_pred eeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCC--c------------
Confidence 334444579999998877777776666667789999988664 4443 4477788886443200 0
Q ss_pred EcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEE
Q 001403 664 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 743 (1084)
Q Consensus 664 ~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 743 (1084)
|-+-... ....-.|++......++++
T Consensus 71 --------------------------------------Vp~~~k~----------------~gd~~~Cv~~~s~S~y~~s 96 (673)
T KOG4378|consen 71 --------------------------------------VPRVRKL----------------TGDNAFCVACASQSLYEIS 96 (673)
T ss_pred --------------------------------------cceeecc----------------ccchHHHHhhhhcceeeec
Confidence 0000000 0011123333344478999
Q ss_pred eecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeC-CeEEEEEc
Q 001403 744 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 822 (1084)
Q Consensus 744 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sd-g~i~vwd~ 822 (1084)
++..+.|+|||+... +....+. +|...|+++.+.....|||++++ |.|.|..+
T Consensus 97 gG~~~~Vkiwdl~~k------------------------l~hr~lk--dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~ 150 (673)
T KOG4378|consen 97 GGQSGCVKIWDLRAK------------------------LIHRFLK--DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT 150 (673)
T ss_pred cCcCceeeehhhHHH------------------------HHhhhcc--CCcceeEEEEecCCcceeEEeccCCcEEEEec
Confidence 999999999987632 1111232 48999999999999999999995 88999999
Q ss_pred CCceeEEEEcCCCC-CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee-ecccccCEEEEEEcCC-CCEEEEEeCC
Q 001403 823 MTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK-LEGHSKRVTGLVFSDA-LNILVSSGGD 899 (1084)
Q Consensus 823 ~~~~~~~~~~~~~~-~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~-l~~h~~~V~~l~~spd-~~~l~s~s~d 899 (1084)
.++....+|....+ .+.-+.|+|....+|.+++++|.|.+||+....++.. .+.|+.+...++|+|. ..+||+.|.|
T Consensus 151 ~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 151 KTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD 230 (673)
T ss_pred ccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEeccc
Confidence 99988888876544 5568999996667888999999999999987766654 4579999999999994 5788899999
Q ss_pred CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEE
Q 001403 900 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATF 978 (1084)
Q Consensus 900 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~f 978 (1084)
..|.+||+............ .+.+.++|+++|.+|++| ..|.|..||++..+........|...|++++|
T Consensus 231 kki~~yD~~s~~s~~~l~y~---------~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf 301 (673)
T KOG4378|consen 231 KKINIYDIRSQASTDRLTYS---------HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF 301 (673)
T ss_pred ceEEEeecccccccceeeec---------CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence 99999999874422211111 157899999999999996 78999999999777666667789999999999
Q ss_pred ccCC
Q 001403 979 SCDC 982 (1084)
Q Consensus 979 s~dg 982 (1084)
-+..
T Consensus 302 q~s~ 305 (673)
T KOG4378|consen 302 QPSP 305 (673)
T ss_pred eecc
Confidence 8764
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-20 Score=211.74 Aligned_cols=299 Identities=15% Similarity=0.242 Sum_probs=229.8
Q ss_pred eEEEEcCCCc-eeeee----cccccCccccccceEEEEEcCCccccc--eeeeecCCCCCeEEEEEcCCCCE----EEEE
Q 001403 338 MSMDFHPVQH-TLLLG----LWDVNSGQKLFIRNFKVWDIGACSMLF--KTALVRDPGVSVNRVVWSPDGSL----LGVA 406 (1084)
Q Consensus 338 ~~v~~spdg~-~las~----~~d~~sg~~~~~~~v~iwd~~~~~~~~--~~~~~~~h~~~V~~v~fspdg~~----las~ 406 (1084)
..++|||++. +||+| ..|..-+ .+.++.||.+.-..... +..---.-......++|++.|.. ||.|
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfs---t~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG 86 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFS---TSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGG 86 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccc---cccccceeeecccCccccccccccccccccceeeeecccCCCccceeecc
Confidence 4579999997 77773 3342211 13666777764322211 10000112457889999998776 8889
Q ss_pred eCCCEEEEEEccC---CccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEec--cCCCcEE
Q 001403 407 YSKHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE--GHGAPVY 481 (1084)
Q Consensus 407 ~~dg~v~iwd~~~---~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~--~h~~~v~ 481 (1084)
..||.|.+||... +.....+.....|.+.|..+.|++.... +|++|+.||.|.|||+..-+.-.+.. ...+.|.
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~ 165 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK 165 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce
Confidence 9999999999876 4444445577789999999999999876 89999999999999998755544442 2457899
Q ss_pred EEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCC--eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-ce
Q 001403 482 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GA 558 (1084)
Q Consensus 482 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~-~~ 558 (1084)
+++|+.. ..+.|++++.+|++.|||++..+.+..+..+.. .+..++|+|+...-+....+.++...|.+||++. ..
T Consensus 166 ~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass 244 (1049)
T KOG0307|consen 166 CLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS 244 (1049)
T ss_pred Eeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC
Confidence 9999643 457899999999999999999888877766654 5788999998865444444556688999999875 45
Q ss_pred EeeeeeccccccCceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC-EEEEEECCC
Q 001403 559 IKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANEN 636 (1084)
Q Consensus 559 ~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg 636 (1084)
.++.+++|. ..|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+. .+..+.|+|... .+++++-||
T Consensus 245 P~k~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W~fdv~w~pr~P~~~A~asfdg 319 (1049)
T KOG0307|consen 245 PLKILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN--WCFDVQWCPRNPSVMAAASFDG 319 (1049)
T ss_pred chhhhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--ceeeeeecCCCcchhhhheecc
Confidence 677788888 899999999987 7888899999999999999999999986544 588999999554 889999999
Q ss_pred eEEEEEcCCC
Q 001403 637 RIKILETPES 646 (1084)
Q Consensus 637 ~i~iwd~~~~ 646 (1084)
.|.|+.+.+.
T Consensus 320 kI~I~sl~~~ 329 (1049)
T KOG0307|consen 320 KISIYSLQGT 329 (1049)
T ss_pred ceeeeeeecC
Confidence 9999998865
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.7e-17 Score=186.67 Aligned_cols=372 Identities=25% Similarity=0.418 Sum_probs=276.6
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCc-cccceeeeeccc-ccEeEEEe-ecCCCcEEEEEEeCCCcEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHV-GNVNDLAF-SAPCKQISVITCGDDKTIK 460 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~-~~~~~~~l~~h~-~~V~~l~~-s~d~~~l~l~s~~~d~~i~ 460 (1084)
...|...+.++.|.+++..++.++.|+.+.+|+...+. .+. .+.++. ..+..+.+ ++++....+..+..|+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 45689999999999999999999999999999999875 232 444533 36777777 7777632333344599999
Q ss_pred EEECCC-CceeeEeccCCCcEEEEeecccCCCcEEEEEec-CCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEE
Q 001403 461 VWDAVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 538 (1084)
Q Consensus 461 vwd~~~-g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 538 (1084)
+||... ......+..|...|..++|++ ++..+++++. |+.+++|+.........+..+...+.+++|+|++..++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSP--DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECC--CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEE
Confidence 999988 788889999999999999965 5557888875 999999999987778888888999999999999984444
Q ss_pred E-eeCCCCCeeEEEecCCCceEee-eeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeE-EEEEcCCCCCC
Q 001403 539 C-GTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL-LTTIDAGGGLP 615 (1084)
Q Consensus 539 ~-~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~ 615 (1084)
+ +. ++.+.+||...+.... .+.+|. ... ...|+|++..+++++.|+.+++|+...... ...+..+ ..
T Consensus 216 ~~~~----d~~i~~wd~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~ 285 (466)
T COG2319 216 SGSS----DGTIRLWDLSTGKLLRSTLSGHS---DSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SS 285 (466)
T ss_pred EecC----CCcEEEEECCCCcEEeeecCCCC---cce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC--Cc
Confidence 3 43 6668899988888877 577776 443 338999998999999999999999987665 4444323 45
Q ss_pred CcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccce
Q 001403 616 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 695 (1084)
Q Consensus 616 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 695 (1084)
.+.++.|.|++..+++++.|+.+.+|+...........
T Consensus 286 ~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------------------------------------------ 323 (466)
T COG2319 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT------------------------------------------ 323 (466)
T ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee------------------------------------------
Confidence 68899999988888888888889999776543222111
Q ss_pred ecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeee
Q 001403 696 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 775 (1084)
Q Consensus 696 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 775 (1084)
..
T Consensus 324 --------------------------~~---------------------------------------------------- 325 (466)
T COG2319 324 --------------------------LK---------------------------------------------------- 325 (466)
T ss_pred --------------------------ec----------------------------------------------------
Confidence 00
Q ss_pred cCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEE--eCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEE
Q 001403 776 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 853 (1084)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~--sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~ 853 (1084)
.|...+..+.+.+++..++.+ .++.+.+|+............. ..+..+.+++ + ..++.
T Consensus 326 ----------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~ 386 (466)
T COG2319 326 ----------------GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-D-GRVVS 386 (466)
T ss_pred ----------------ccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-C-CCEEE
Confidence 022233334442122333333 2456666777665522222222 2278889998 6 55554
Q ss_pred -EeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001403 854 -GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 854 -g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~ 909 (1084)
+..++.+.+|+............+...+....+++++..+++++.++++++|+...
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 387 SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 88999999999998887777665547899999999999999999999999999987
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.9e-19 Score=170.72 Aligned_cols=406 Identities=11% Similarity=0.130 Sum_probs=259.1
Q ss_pred EEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001403 393 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 472 (1084)
Q Consensus 393 ~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~ 472 (1084)
-++|||+|+|+|+++.- .+.|-|.++-+..+. ..--..|..+.|..|... .+.....|+.|.+|++...+-..+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql----f~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQL----FLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHH----HHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 47899999999999877 688899888654432 223456889999999885 455667899999999999998889
Q ss_pred eccCCCcEEEEeecccCCC-cEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEE
Q 001403 473 FEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 551 (1084)
Q Consensus 473 ~~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~ 551 (1084)
+..-..++.+++|+| || ..|.+...+-.|.+|.+.+..... +......+..++|+|||++.+.++.- |-...+.+
T Consensus 87 Ideg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i 162 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQI 162 (447)
T ss_pred eccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc-cHHHHHHH
Confidence 988889999999965 55 567778889999999998765543 33444566899999999999998742 22223333
Q ss_pred ecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEE
Q 001403 552 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 631 (1084)
Q Consensus 552 wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 631 (1084)
........++.+.... -..+.+.|+|||+.+++ ||.--.-.+...+..- .+..++|+|.++++++
T Consensus 163 ~~c~~W~ll~~f~~dT---~DltgieWsPdg~~laV---------wd~~Leykv~aYe~~l---G~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDT---IDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERGL---GLKFVEWSPCNQFLAV 227 (447)
T ss_pred HhhHHHHHHHhcCCCc---ccccCceECCCCcEEEE---------ecchhhheeeeeeecc---ceeEEEeccccceEEe
Confidence 3333334445555544 56788999999988775 4322211111222111 3788999999999999
Q ss_pred EECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeec
Q 001403 632 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 711 (1084)
Q Consensus 632 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~ 711 (1084)
|+.|+.+|+.+--+-+.+..+- |...+ .|.+..+-..++..
T Consensus 228 GsyD~~lrvlnh~tWk~f~efl-hl~s~--------------------------------------~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 228 GSYDQMLRVLNHFTWKPFGEFL-HLCSY--------------------------------------HDPTLHLLEKETFS 268 (447)
T ss_pred eccchhhhhhceeeeeehhhhc-cchhc--------------------------------------cCchhhhhhhhhcc
Confidence 9999999997755443332221 10000 01110000000000
Q ss_pred CccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCee--ecCCCCCccccccCc
Q 001403 712 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL--YQPRHGPQFMVNDTT 789 (1084)
Q Consensus 712 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 789 (1084)
. -.-...++.|.|..- ...+|....... ......+++ ..+.+ +.
T Consensus 269 ~------------~ql~~~cLsf~p~~~---------~a~~~~~se~~Y-----E~~~~pv~~~~lkp~t-------D~- 314 (447)
T KOG4497|consen 269 I------------VQLLHHCLSFTPTDL---------EAHIWEESETIY-----EQQMTPVKVHKLKPPT-------DF- 314 (447)
T ss_pred h------------hhhcccccccCCCcc---------ccCccccchhhh-----hhhhcceeeecccCCC-------CC-
Confidence 0 000112233333211 011111000000 000000000 00000 01
Q ss_pred CCCCCCCccEEEecCCCCEEEEEeC---CeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 001403 790 DSNSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 866 (1084)
Q Consensus 790 ~~~~~~~v~~l~~s~dg~~l~~~sd---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~ 866 (1084)
.+..-.+.-++||+|..++++-.| +.+.+||++..+....+. ...+|.+..|.| ....|+.+.....+++|...
T Consensus 315 -pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 315 -PNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred -CCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCC
Confidence 124556788999999999999985 679999998776655544 456899999999 77778878777789999987
Q ss_pred CceeeeeecccccCEEEEEEcCCCCEEEEEeCCC
Q 001403 867 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA 900 (1084)
Q Consensus 867 ~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg 900 (1084)
....+.. .+..-.|..+.|.-+|..++..+.|.
T Consensus 392 g~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 392 GPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred CceEEec-CCCCceeeeEEecCCCcEEEEEcCCc
Confidence 5454433 33335799999999999999999886
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-18 Score=168.49 Aligned_cols=267 Identities=15% Similarity=0.200 Sum_probs=196.1
Q ss_pred ccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccc-eeeeecCCCCCeEEEEEcC--CCCEEEEEe
Q 001403 331 IEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLF-KTALVRDPGVSVNRVVWSP--DGSLLGVAY 407 (1084)
Q Consensus 331 ~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~-~~~~~~~h~~~V~~v~fsp--dg~~las~~ 407 (1084)
.+|.+-|.++.|.+-|+++|+++.| ++|+|||........ ...-.+.|.+.|..|.|.+ -|+.+|+++
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsD---------q~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS 80 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSD---------QTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS 80 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCC---------CcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe
Confidence 5899999999999999999999998 999999975433322 1223667999999999976 699999999
Q ss_pred CCCEEEEEEccC------CccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc------eeeEec-
Q 001403 408 SKHIVQLYAYHG------GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS------RTYSFE- 474 (1084)
Q Consensus 408 ~dg~v~iwd~~~------~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~------~~~~~~- 474 (1084)
.|+++.||.-.. +..-....++......|+.+.|.|....+.+++++.||.++||+.-.-. ..+++.
T Consensus 81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 999999998631 1112233356677789999999999887799999999999999865432 223333
Q ss_pred ------cCCCcEEEEeecccCC-CcEEEEEecC-----CeEEEEECCCCCc----eEeecCCCCeEEEEEEcCCC----C
Q 001403 475 ------GHGAPVYSLCPHAKEN-IHFIFSISVD-----GKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANG----R 534 (1084)
Q Consensus 475 ------~h~~~v~~~~~~~~~~-~~~l~s~s~d-----g~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~d~----~ 534 (1084)
.+..+..|+.|+++.- ..+|+.|+.+ +.+.||....... ..++..+..+|+.++|.|+- .
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~ 240 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYH 240 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCcee
Confidence 4667788888876533 2467777665 4789998776553 23567888899999999953 3
Q ss_pred EEEEEeeCCCCCeeEEEecCCCce-----------------EeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEE
Q 001403 535 RLFSCGTSKEGESFLVEWNESEGA-----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 597 (1084)
Q Consensus 535 ~l~~~~~~~~~~~~i~~wd~~~~~-----------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 597 (1084)
.||+++. +| |+||++.... .+..+..+..|.+.|..+.|+-.|..|.+.|.||.|++|
T Consensus 241 ~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 241 LLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLW 315 (361)
T ss_pred eEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence 5666654 44 9999887311 122222233344999999999999999999999999999
Q ss_pred ECCC---CeEEEEEcCC
Q 001403 598 DMNK---VQLLTTIDAG 611 (1084)
Q Consensus 598 d~~~---~~~~~~~~~~ 611 (1084)
...- .++...+...
T Consensus 316 kany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 316 KANYNNLWKCTSVLKAE 332 (361)
T ss_pred hhhhhhhheeeeEEecc
Confidence 7643 2344444443
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-19 Score=173.85 Aligned_cols=299 Identities=15% Similarity=0.206 Sum_probs=206.8
Q ss_pred cccceEEEEEEec----CCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccE
Q 001403 724 VKANKISRLTYNN----GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 799 (1084)
Q Consensus 724 ~~~~~i~~l~~s~----~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 799 (1084)
.|..+|..++|.+ +...+++......+.+|+.+... .+++. .. .....+......
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~-----------~ir~l---------q~-y~D~d~~Esfyt 94 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG-----------GIRLL---------QS-YADEDHDESFYT 94 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc-----------ceeee---------ee-ccCCCCCcceEE
Confidence 3667888888874 33445566666688888876431 11111 11 111135566666
Q ss_pred EEecCC----CCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee
Q 001403 800 FALSKN----DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 874 (1084)
Q Consensus 800 l~~s~d----g~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l 874 (1084)
++|+-| .-++|+++ -|.|+|.|..+++....+.+|...|..+.+.|++.++|++++.|.+|++|++.+..++..+
T Consensus 95 csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred EEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 777654 33566665 5999999999999999999999999999999987899999999999999999999998776
Q ss_pred ---cccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee-------------eeeecCCCCcc-------CCCCc
Q 001403 875 ---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC-------------RSLQTPDGVMT-------LAPSE 931 (1084)
Q Consensus 875 ---~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~-------------~~~~~~~~~~~-------~~~~v 931 (1084)
.||.+.|.++.|+++|.+++|+|.|.+|++|++...+.... ..+.....|.. +...|
T Consensus 175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 56999999999999999999999999999999995332110 00111111110 01122
Q ss_pred eEEEEccCCCEEEE-EeCCeEEEEEc-CCcceeeEe------------ecCCCCCEEEEEEcc--CCCEEEEEeCCCcEE
Q 001403 932 THIQFHKDQTRFLL-VHETHLAIYEA-EELTCLKQW------------FPISSVPISQATFSC--DCRMVFTSFVDGTLS 995 (1084)
Q Consensus 932 ~~~~~s~dg~~la~-~~d~~i~vwd~-~~~~~~~~~------------~~~h~~~v~~l~fs~--dg~~l~t~~~dg~i~ 995 (1084)
.++.|- |.++++ +.++.|..|.. +-++.+... +.-....|.-+.|+- -+++||.|...|.|.
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~ 332 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVY 332 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEE
Confidence 333322 577777 78889999987 222222111 111255667776655 578999999999999
Q ss_pred EEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcC
Q 001403 996 IHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1052 (1084)
Q Consensus 996 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~ 1052 (1084)
+||++..+.... ..+..+..+..|+ ..+|+. |+..|+..++||.|.-||.
T Consensus 333 vwdL~~~ep~~~----ttl~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 333 VWDLDNNEPPKC----TTLTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred EEECCCCCCccC----ceEEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEe
Confidence 999998876411 1112222244455 456776 6899999999999999985
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-18 Score=171.01 Aligned_cols=292 Identities=16% Similarity=0.269 Sum_probs=212.5
Q ss_pred eecccCCCCceEEEEcC-----CCceeeeecccccCccccccceEEEEEcCCcc--ccceeeeecCCCCCeEEEEEcCCC
Q 001403 328 QTLIEGSSSPMSMDFHP-----VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACS--MLFKTALVRDPGVSVNRVVWSPDG 400 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~sp-----dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~--~~~~~~~~~~h~~~V~~v~fspdg 400 (1084)
+..++|...|..++|.+ .-+.+|+. |. ..+.||...... ..++...-.+|......++|+-|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatv------G~----~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~ 101 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATV------GG----NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDS 101 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEe------CC----cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecC
Confidence 34568888999999984 22444443 22 678888876543 444443334578888899998753
Q ss_pred ----CEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe---
Q 001403 401 ----SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--- 473 (1084)
Q Consensus 401 ----~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~--- 473 (1084)
-+||+++.-|.|+|.|+.++++.. .+.+|...|+.+.|.|+..+ ++++++.|.+|++||+++..++..|
T Consensus 102 ~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 102 NTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred CCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEeccc
Confidence 489999999999999999998766 68899999999999999877 8999999999999999999999877
Q ss_pred ccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE------ee----------------------cCCCCeEE
Q 001403 474 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DY----------------------DAPGLGCT 525 (1084)
Q Consensus 474 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~------~~----------------------~~~~~~i~ 525 (1084)
.+|.+.|.++.|+. +|.++++++.|..+++|++...+... .+ ..|...|.
T Consensus 178 egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 67999999999955 66799999999999999997432111 00 01111222
Q ss_pred EEEEcCCCCEEEEEeeCCCCCeeEEEecC-CCceE-------------eeeeeccccccCceEEEE--EcCCCCEEEEEE
Q 001403 526 RMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAI-------------KRTYQGLQLQHNSVSVVH--FDTAKDQILAAG 589 (1084)
Q Consensus 526 ~~~~s~d~~~l~~~~~~~~~~~~i~~wd~-~~~~~-------------~~~~~~~~~~~~~v~~~~--~s~~~~~l~~~~ 589 (1084)
|+.|- |+++++-+. ++.|..|.. +-++. +..+.... ..+.-+. |.|-++.|+.|.
T Consensus 256 Cvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~---c~iWfirf~~d~~~~~la~gn 326 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM---CDIWFIRFAFDPWQKMLALGN 326 (385)
T ss_pred HHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccCc---cceEEEEEeecHHHHHHhhcc
Confidence 22222 455655443 567999987 21111 22222222 4555554 456688999999
Q ss_pred CCCcEEEEECCCCeEE--EEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 590 DDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 590 ~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
..|.|++||++..+.. .++........|...+|+.||..|+...+|++|.-||..
T Consensus 327 q~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 327 QSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999999876652 333333344568899999999999999999999999854
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-19 Score=188.34 Aligned_cols=289 Identities=15% Similarity=0.161 Sum_probs=213.7
Q ss_pred EEEEcC---CCCEEEEEeCCCEEEEEEccCCccc---cceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 393 RVVWSP---DGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 393 ~v~fsp---dg~~las~~~dg~v~iwd~~~~~~~---~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
++.|++ ....||.+..||.|.++|....... +++.....|...|..+.|.| |+. .|++++.|.++++||+++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeecc
Confidence 366766 3568899999999999998764321 22335668999999999999 543 799999999999999999
Q ss_pred CceeeE--eccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCce---------------------------Eee
Q 001403 467 GSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---------------------------VDY 517 (1084)
Q Consensus 467 g~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---------------------------~~~ 517 (1084)
+++... +.||.+.|.++||.+. |...+++|+.||.|.|||++..... ...
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~ 210 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPT-NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW 210 (720)
T ss_pred ceeecceeecccccccchhhhccC-CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence 998876 8999999999999876 4478999999999999998643210 011
Q ss_pred cCCCCeEEE---EEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee--------eeccccccCceEEEEEcCCCCEEE
Q 001403 518 DAPGLGCTR---MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT--------YQGLQLQHNSVSVVHFDTAKDQIL 586 (1084)
Q Consensus 518 ~~~~~~i~~---~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~--------~~~~~~~~~~v~~~~~s~~~~~l~ 586 (1084)
..+...|.+ +.+..|...||+++. +|+.|.+||++....... +..+......+.++.....|.+++
T Consensus 211 kA~s~ti~ssvTvv~fkDe~tlaSaga---~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~ 287 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLFKDESTLASAGA---ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLF 287 (720)
T ss_pred ccccCceeeeeEEEEEeccceeeeccC---CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEE
Confidence 122334544 666789999999875 477899999987544322 222211123466777777789999
Q ss_pred EEECCCcEEEEECCCCeE--EEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC-CeeeeccccccceeEEE
Q 001403 587 AAGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLS 663 (1084)
Q Consensus 587 ~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~ 663 (1084)
+.+.|+.|++||+.+... +..+.++-....-..-..+||+.++++|+.|...++|.+.+. .....+.+|...|++++
T Consensus 288 AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~ 367 (720)
T KOG0321|consen 288 ASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVR 367 (720)
T ss_pred EEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEe
Confidence 988999999999986432 233332221111223457899999999999999999999876 44566788999999999
Q ss_pred EcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccce
Q 001403 664 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 664 ~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
+.|. + -.-++++++|-.+++|++.
T Consensus 368 w~pS--------------------~-~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 368 WLPS--------------------A-TTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred eccc--------------------c-CCCceeeccCcceEEEecc
Confidence 9863 2 3346677999999999985
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=178.29 Aligned_cols=308 Identities=13% Similarity=0.112 Sum_probs=221.2
Q ss_pred CCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccc
Q 001403 646 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 725 (1084)
Q Consensus 646 ~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 725 (1084)
-......+.+..+|.+++|.|. .+.+++++|+..|.|-+|++.+..+.......+. .|
T Consensus 176 ~~~~~v~kv~~~Rit~l~fHPt--------------------~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~--~h 233 (498)
T KOG4328|consen 176 YRILNVAKVTDRRITSLAFHPT--------------------ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT--PH 233 (498)
T ss_pred ceecceeEecccceEEEEeccc--------------------CcceEEEEccCCCcEEEEecCCCCCccCceEEec--cC
Confidence 3444556677888999999985 3456788899999999999975444444333333 38
Q ss_pred cceEEEEEEecCC-CeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC
Q 001403 726 ANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 804 (1084)
Q Consensus 726 ~~~i~~l~~s~~g-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 804 (1084)
..+|.++.|+|.. ..+++.+.||+|++-|+...... . +.... .....+..+.|+.
T Consensus 234 s~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e-----------~---------v~s~~----~d~~~fs~~d~~~ 289 (498)
T KOG4328|consen 234 SGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE-----------E---------VLSLD----TDNIWFSSLDFSA 289 (498)
T ss_pred CccccceEecCCChhheeeeccCceeeeeeecchhhH-----------H---------HhhcC----ccceeeeeccccC
Confidence 9999999999964 56889999999999887654220 0 11100 1345667788888
Q ss_pred CCCEEEEEeC-CeEEEEEcCCcee-EEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce----eeeeecccc
Q 001403 805 NDAYLFSASG-GVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGHS 878 (1084)
Q Consensus 805 dg~~l~~~sd-g~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~----~~~~l~~h~ 878 (1084)
+...++.+.+ |...+||+.++.. ...+.-|...|+.++++|-...+||+++.|++++|||+..-. ++-....|.
T Consensus 290 e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr 369 (498)
T KOG4328|consen 290 ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHR 369 (498)
T ss_pred CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccc
Confidence 8888888875 8999999987554 666777888999999999888899999999999999997632 122234599
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCC---CCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEE
Q 001403 879 KRVTGLVFSDALNILVSSGGDAQIFVWDVD---GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIY 954 (1084)
Q Consensus 879 ~~V~~l~~spd~~~l~s~s~dg~I~iwd~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vw 954 (1084)
..|.+..|||++..|+|.+.|..|+|||.. .... ....+.....+.. --......|.||..+++++ .-..|-|+
T Consensus 370 rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~-p~~~I~Hn~~t~R-wlT~fKA~W~P~~~li~vg~~~r~IDv~ 447 (498)
T KOG4328|consen 370 RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE-PLGTIPHNNRTGR-WLTPFKAAWDPDYNLIVVGRYPRPIDVF 447 (498)
T ss_pred ceeeeeEEcCCCCceEeeccCCceEEeecccccccCC-ccceeeccCcccc-cccchhheeCCCccEEEEeccCcceeEE
Confidence 999999999999889999999999999995 2111 1111211111100 0135567899999999997 56679999
Q ss_pred EcCCcceeeEeecCCCCCEEE-EEEccCCC-EEEEEeCCCcEEEEEcCC
Q 001403 955 EAEELTCLKQWFPISSVPISQ-ATFSCDCR-MVFTSFVDGTLSIHEASN 1001 (1084)
Q Consensus 955 d~~~~~~~~~~~~~h~~~v~~-l~fs~dg~-~l~t~~~dg~i~vwd~~~ 1001 (1084)
|-..++.+.++.......|.+ ..|.|-+. +++-++..|.|.||--+.
T Consensus 448 ~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 448 DGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 999888887755444445555 46888766 444445567788876543
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-17 Score=179.72 Aligned_cols=565 Identities=14% Similarity=0.135 Sum_probs=330.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC----------CCcEEEEEEeCC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP----------CKQISVITCGDD 456 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d----------~~~l~l~s~~~d 456 (1084)
|...-.++.|+|.| +||.|+.. .|.+-|..+-+.++ .+.-|...|+.+.|.|- ..+++++++...
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~ 88 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS 88 (1062)
T ss_pred CcccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEecccc
Confidence 33446778999987 67777655 48899988876655 78889999999999763 245678889999
Q ss_pred CcEEEEECCCCceeeEeccCCCcEEEEeecccCCC--cEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcC-CC
Q 001403 457 KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NG 533 (1084)
Q Consensus 457 ~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-d~ 533 (1084)
|.|.+||...+..+..+..|.+++..++|.+..+. .+|+.-....++.+|+.++++.............++.+.| |.
T Consensus 89 GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~ 168 (1062)
T KOG1912|consen 89 GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS 168 (1062)
T ss_pred CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc
Confidence 99999999999999999999999999999776543 4777778888999999999998888777776777788888 44
Q ss_pred CEEEEEeeCCCCCeeEEEecCC-------CceEeeeeecccc-------------c-cCc--------eEEEEEcCCCCE
Q 001403 534 RRLFSCGTSKEGESFLVEWNES-------EGAIKRTYQGLQL-------------Q-HNS--------VSVVHFDTAKDQ 584 (1084)
Q Consensus 534 ~~l~~~~~~~~~~~~i~~wd~~-------~~~~~~~~~~~~~-------------~-~~~--------v~~~~~s~~~~~ 584 (1084)
+.+...+. .|.+.+-+.- .|+..+.-..|.. + ..+ ...++|+|.-+.
T Consensus 169 rh~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn 244 (1062)
T KOG1912|consen 169 RHFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN 244 (1062)
T ss_pred ceEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc
Confidence 44444332 3344444321 1222222222210 0 000 112467888777
Q ss_pred EEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCC--CEEEEEECCCeEEEEEcCCCCeeeec-----c-ccc
Q 001403 585 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPESNSVDAA-----G-VLS 656 (1084)
Q Consensus 585 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~-----~-~~~ 656 (1084)
++.......+.++|++-..++.......+. +.-+.+-|++ ..|.+.-.||.+.+|-.+........ . ...
T Consensus 245 ~lfi~~prellv~dle~~~~l~vvpier~~--akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~ 322 (1062)
T KOG1912|consen 245 ILFITFPRELLVFDLEYECCLAVVPIERGG--AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLG 322 (1062)
T ss_pred eEEEEeccceEEEcchhhceeEEEEeccCC--cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccc
Confidence 777777889999999998888888766553 4566676654 57899999999999987653111111 0 000
Q ss_pred cceeEEEEcCCCceeeeeccCceeEecCCCCCC-CCccceecccCccccccceeecCccceeeccCCccccceEEEEEEe
Q 001403 657 DNLRKLSVNPISTVTGAGIANGSVSVNEDPKED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN 735 (1084)
Q Consensus 657 ~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 735 (1084)
..+.++ .+...... +.+...|. ...++.--.+|.+.+|.+..+.......... ..-+.. |+
T Consensus 323 ~Q~~~v--r~m~~~rp---------~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~-----iel~~p--f~ 384 (1062)
T KOG1912|consen 323 EQVHVV--RPMEEFRP---------VIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSS-----IELVLP--FD 384 (1062)
T ss_pred cceEEE--eechhccc---------ceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccc-----cccccc--cc
Confidence 111111 11111000 00000122 3344444566778888876322111100000 000000 00
Q ss_pred cCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCC
Q 001403 736 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG 815 (1084)
Q Consensus 736 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg 815 (1084)
-++..+..+- . . +......+ +|.....+....|-.+.-
T Consensus 385 f~~~~~~v~k-~---~-------------------------------l~~LS~dg-~h~sGs~~~~~~p~p~~t------ 422 (1062)
T KOG1912|consen 385 FNLSTKLVGK-T---S-------------------------------LISLSDDG-SHSSGSTCVRMRPMPELT------ 422 (1062)
T ss_pred ccCceeehhh-c---c-------------------------------ccchhhcC-CCCCCceeeecccCcccc------
Confidence 0000000000 0 0 00000000 133333333332211111
Q ss_pred eEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEE
Q 001403 816 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVS 895 (1084)
Q Consensus 816 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s 895 (1084)
.....+.+. +....-| ++|.|...|+|.++|+.++..-..+..|.+.|.++.|.-...++-.
T Consensus 423 -------------~~~~~p~~n-~~~~~~p----LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSf 484 (1062)
T KOG1912|consen 423 -------------KVENDPGGN-TPAGTVP----LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSF 484 (1062)
T ss_pred -------------eeecCCCCC-ccceeee----eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEe
Confidence 111111111 1122223 8999999999999999999999999999999999999866444322
Q ss_pred ---------EeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEe
Q 001403 896 ---------SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQW 965 (1084)
Q Consensus 896 ---------~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~ 965 (1084)
++.-+.+.+-|+.+|..+..+-++..+. .+|..+..|..|+||++. .+.-+.+||+++..+++..
T Consensus 485 sys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~de-----spI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~m 559 (1062)
T KOG1912|consen 485 SYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDE-----SPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLM 559 (1062)
T ss_pred eeccccccccceeeeEEEEEcccccccccccCCCCCc-----CcceeeeecccCceEEEEecccchHHHhhccchHHHHH
Confidence 2223457888999887544333333322 379999999999999996 6778999999887776542
Q ss_pred ecCCCCC-EEEEEEc-cCC----------------CEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeE
Q 001403 966 FPISSVP-ISQATFS-CDC----------------RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1027 (1084)
Q Consensus 966 ~~~h~~~-v~~l~fs-~dg----------------~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1027 (1084)
. -.-+ |+.+.|+ |.- +..++.+ +..+++.+.......+-. ......- ......-.+
T Consensus 560 S--~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds--~es~~~~~~~~a~~~sdg-sq~~~a~-esfafal~~ 633 (1062)
T KOG1912|consen 560 S--LALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDS--VESRIYHITLSALVVSDG-SQVNTAW-ESFAFALCA 633 (1062)
T ss_pred h--hcCCcEEEEeecccCCCCcccccchhhhhhhhceeeecc--ccchheehhhhhhhhccc-cchhhHH-HHHHHHHHh
Confidence 2 2344 8888888 321 1223322 223333332211111100 0000000 000112234
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 1028 IAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 1028 ~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
++|- +..++.|+.+|++.+||+--
T Consensus 634 mAwk---~d~lv~GD~~GNl~~WDlg~ 657 (1062)
T KOG1912|consen 634 MAWK---DDILVVGDVEGNLVVWDLGR 657 (1062)
T ss_pred hhcc---CCeeEeecccCceeEEeccc
Confidence 6776 57999999999999999743
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-16 Score=184.37 Aligned_cols=370 Identities=23% Similarity=0.357 Sum_probs=274.1
Q ss_pred ecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCC-CCeEEEEE-cCCCC-EEEE
Q 001403 329 TLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVW-SPDGS-LLGV 405 (1084)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~-~~V~~v~f-spdg~-~las 405 (1084)
.+..|...+.++.|.+++..++.+..| +.+.+|+......... .+.++. ..+..+.+ ++++. +++.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d---------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSD---------GTIKLWDLDNGEKLIK--SLEGLHDSSVSKLALSSPDGNSILLA 128 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCC---------CcEEEEEcCCCceeEE--EEeccCCCceeeEEEECCCcceEEec
Confidence 467889999999999999999998766 9999999987751111 133322 47777777 88888 5555
Q ss_pred EeC-CCEEEEEEccC-CccccceeeeecccccEeEEEeecCCCcEEEEEEeC-CCcEEEEECCCCceeeEeccCCCcEEE
Q 001403 406 AYS-KHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPVYS 482 (1084)
Q Consensus 406 ~~~-dg~v~iwd~~~-~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-d~~i~vwd~~~g~~~~~~~~h~~~v~~ 482 (1084)
.+. |+.+.+|+..+ ..... .+..|...|..++|+|++. .+++++. |+.+++|++.++..+..+.+|...|.+
T Consensus 129 ~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 203 (466)
T COG2319 129 SSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203 (466)
T ss_pred cCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEeeccCCCceEE
Confidence 444 89999999997 43333 6779999999999999999 6777775 999999999999999999999999999
Q ss_pred EeecccCCCc-EEEEEecCCeEEEEECCCCCceE-eecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE-
Q 001403 483 LCPHAKENIH-FIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI- 559 (1084)
Q Consensus 483 ~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~- 559 (1084)
+++. +++. .+++++.|+.|++||........ .+..+.... ...|++++..+++++. ++.+++|+......
T Consensus 204 ~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~~~ 276 (466)
T COG2319 204 LAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRLWDLRSSSSL 276 (466)
T ss_pred EEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEEeeecCCCcE
Confidence 9997 4555 55556999999999888655555 466666654 3389999988886664 67799999987664
Q ss_pred eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEc--CCCCCCCcceEEEecCCCEEEEE-ECCC
Q 001403 560 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID--AGGGLPENPRICFNKNGTLLAVI-ANEN 636 (1084)
Q Consensus 560 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~~~-~~dg 636 (1084)
...+.+|. ..+.++.|.|++..+++++.|+.+.+|+..+........ .+.. .+..+.|.+++..++.+ ..|+
T Consensus 277 ~~~~~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~ 351 (466)
T COG2319 277 LRTLSGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSLLVSGGSDDG 351 (466)
T ss_pred EEEEecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC--ceEEEEECCCCCEEEEeecCCC
Confidence 44444444 789999999998999999888999999998887776665 3333 47888884343566665 6788
Q ss_pred eEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccc-eecccCccccccceeecCccc
Q 001403 637 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI-SVEAENKSEVEKPLFARPSEC 715 (1084)
Q Consensus 637 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~d~~i~~w~~~~~~~~~~ 715 (1084)
.+.+|+............... +..+.+.+ + .... .+..++.+.+|+.........
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (466)
T COG2319 352 TIRLWDLRTGKPLKTLEGHSN-VLSVSFSP----------------------D-GRVVSSGSTDGTVRLWDLSTGSLLRN 407 (466)
T ss_pred cEEeeecCCCceeEEecCCce-EEEEEECC----------------------C-CCEEEEecCCCceEEEecccCeeeee
Confidence 999999988762222222111 55555542 1 2222 256778899999764322211
Q ss_pred eeeccCCcccc-ceEEEEEEecCCCeEEEeecCCceEEeeccC
Q 001403 716 QSLLLPSKVKA-NKISRLTYNNGGQAIFALASNGVHLMWRWPR 757 (1084)
Q Consensus 716 ~~~~~~~~~~~-~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~ 757 (1084)
.. .. ..+....+++++..++.++.++.+++|+...
T Consensus 408 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 408 LD-------GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cc-------CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 11 11 6788899999999999988899999987543
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.6e-19 Score=174.60 Aligned_cols=253 Identities=16% Similarity=0.228 Sum_probs=183.8
Q ss_pred ecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccc-------------cceeeeecCCCCCeEEEE
Q 001403 329 TLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSM-------------LFKTALVRDPGVSVNRVV 395 (1084)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~-------------~~~~~~~~~h~~~V~~v~ 395 (1084)
....|.+.+..+.-++-|+-.++++|. ..|.|+||++..... ......+.+|...=..++
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~asws-------e~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~Ld 218 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWS-------ENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLD 218 (440)
T ss_pred cccccccccceeeecccCCcceeeeec-------ccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeee
Confidence 344677788888888877666666665 238999999853211 011124678999999999
Q ss_pred EcC-CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC---ceee
Q 001403 396 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTY 471 (1084)
Q Consensus 396 fsp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g---~~~~ 471 (1084)
||| .-..|++|..-+.|++|...+|.-..-...+.+|+..|..++|||..+. ++++||.||+|+|||++.+ .++.
T Consensus 219 WSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~ 297 (440)
T KOG0302|consen 219 WSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVS 297 (440)
T ss_pred cccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeE
Confidence 999 2234778877778999999987654333467789999999999998877 8999999999999999988 3444
Q ss_pred EeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC---CceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCee
Q 001403 472 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 548 (1084)
Q Consensus 472 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 548 (1084)
+ +.|.+.|+.+.|+. +-.+|++|+.||+++|||++.. ++...++.|..+|+++.|+|...-.+.++. .+.+
T Consensus 298 ~-kAh~sDVNVISWnr--~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D~Q 371 (440)
T KOG0302|consen 298 T-KAHNSDVNVISWNR--REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---EDNQ 371 (440)
T ss_pred e-eccCCceeeEEccC--CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CCCc
Confidence 4 88999999999964 3359999999999999999864 456788999999999999996554444332 2778
Q ss_pred EEEecCCCceE--------e--------eeeeccccccCceEEEEEcCCC-CEEEEEECCCcEEEE
Q 001403 549 LVEWNESEGAI--------K--------RTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIW 597 (1084)
Q Consensus 549 i~~wd~~~~~~--------~--------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw 597 (1084)
|.+||+....- . +.+-.|. ....+..+.|++.- .++++.+.|| +.||
T Consensus 372 itiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 372 ITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EEEEEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 99999863211 0 0111121 12457778888774 4566666666 3444
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-18 Score=170.61 Aligned_cols=269 Identities=16% Similarity=0.241 Sum_probs=198.7
Q ss_pred CCceeeeecccccCccccccceEEEEEcC-CccccceeeeecCCCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEccCCcc
Q 001403 345 VQHTLLLGLWDVNSGQKLFIRNFKVWDIG-ACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSD 422 (1084)
Q Consensus 345 dg~~las~~~d~~sg~~~~~~~v~iwd~~-~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~las~~~dg~v~iwd~~~~~~ 422 (1084)
+.++||. .|....| |.+.|--+. ++...-......||+++|..++|+| +...||+|+.|.+|.||.+-.+..
T Consensus 43 NPkfiAv-i~easgG-----gaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l 116 (472)
T KOG0303|consen 43 NPKFVAV-IIEASGG-----GAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGL 116 (472)
T ss_pred CCceEEE-EEecCCC-----cceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCccc
Confidence 4466666 2332222 344444443 3434444456889999999999999 778999999999999999875533
Q ss_pred ----ccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEe
Q 001403 423 ----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 498 (1084)
Q Consensus 423 ----~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 498 (1084)
......|.+|...|.-++|+|.-.. .|++++.|.+|.+||+.+|+.+.++. |.+.|++++| +.||.++++++
T Consensus 117 ~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sf--n~dGs~l~Ttc 192 (472)
T KOG0303|consen 117 TRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSF--NRDGSLLCTTC 192 (472)
T ss_pred ccCcccceEEEeecceeEEEEeecccchh-hHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEe--ccCCceeeeec
Confidence 2345588999999999999999877 78899999999999999999999988 9999999999 45789999999
Q ss_pred cCCeEEEEECCCCCceEeecCCCC-eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEE
Q 001403 499 VDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 577 (1084)
Q Consensus 499 ~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~ 577 (1084)
.|+.||+||.+.++...+-..|.+ .-..+.|-.+|. +++.+.++-.+.++-+||..+-+.-..+.... ....|.--.
T Consensus 193 kDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PF 270 (472)
T KOG0303|consen 193 KDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPF 270 (472)
T ss_pred ccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEec-cCCceEEee
Confidence 999999999999888877755554 556677888998 66767777778899999977543222222111 124566667
Q ss_pred EcCCCCEEEE-EECCCcEEEEECCCCeE-EEEEcCCCCCCCcceEEEecC
Q 001403 578 FDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRICFNKN 625 (1084)
Q Consensus 578 ~s~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~ 625 (1084)
|.+|.+.++. |-.|+.||-|.+....+ ++-+.......+-..+.|.|.
T Consensus 271 yD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 271 YDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred ecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 8898888766 55899999999877553 333332223333456666663
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-18 Score=165.13 Aligned_cols=190 Identities=16% Similarity=0.196 Sum_probs=148.4
Q ss_pred ccEEEecCCCCEEEEEeCCeEEEEEcC-CceeEE---EE----cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 001403 797 VPCFALSKNDAYLFSASGGVISLYIVM-TFKTIL---TI----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 868 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~sdg~i~vwd~~-~~~~~~---~~----~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~ 868 (1084)
..+++|+|||.+|.+|....|++||+. .|..-. ++ .+..+-|.+++|+|.+.+.+|.|+....+-||.-..+
T Consensus 161 AhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~ 240 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR 240 (406)
T ss_pred heeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC
Confidence 357899999999999988999999983 443211 11 1235678999999988889999999999999999999
Q ss_pred eeeeeecccccCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-
Q 001403 869 EVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 946 (1084)
Q Consensus 869 ~~~~~l~~h~~~V~~l~~spd~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~- 946 (1084)
.++..+-+|.+.|+.+.|.+||+.|.+|+. |-.|..||+.... ..+-.+..|......-.-....|+|++||+|
T Consensus 241 ~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~----~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~ 316 (406)
T KOG2919|consen 241 RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR----DPVYALERHVGDTNQRILFDLDPKGEILASGD 316 (406)
T ss_pred CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc----chhhhhhhhccCccceEEEecCCCCceeeccC
Confidence 999999999999999999999999999875 6779999998733 2233333333311222345567899999997
Q ss_pred eCCeEEEEEcCC-cceeeEeecCCCCCEEEEEEccCCCEEEEEeCC
Q 001403 947 HETHLAIYEAEE-LTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 991 (1084)
Q Consensus 947 ~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d 991 (1084)
.+|.|++||+++ |..+.. ...|+..+..+++.|-=..++|++..
T Consensus 317 tdG~V~vwdlk~~gn~~sv-~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 317 TDGSVRVWDLKDLGNEVSV-TGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CCccEEEEecCCCCCcccc-cccccccccceecCcccceeeeccCc
Confidence 899999999998 665555 45678899999999987778877654
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-17 Score=169.71 Aligned_cols=499 Identities=15% Similarity=0.104 Sum_probs=299.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEe------ecCCCcEEEEEEeCCCcEE
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SAPCKQISVITCGDDKTIK 460 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~------s~d~~~l~l~s~~~d~~i~ 460 (1084)
|...|.|+.|+.+...+.+++++..+.-||+.+.+. ... .-....|....+ ...+..-.++.++.||.+.
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~---~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVA---KLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhh-hhh---hCCcccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence 777888999998887776666555455555554332 111 111111111111 0111111577788899999
Q ss_pred EEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEe
Q 001403 461 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 540 (1084)
Q Consensus 461 vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 540 (1084)
+-+ +.|+.-..+..|.+.+.+-.|++ ||.-|++++.||.|++|.- ++-...++.....+|.|++|.|+.+.++.|.
T Consensus 89 il~-k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 89 ILN-KSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred Eec-ccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEec
Confidence 998 88888889999999999999954 7778999999999999973 3334444555667899999999999888875
Q ss_pred eCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceE
Q 001403 541 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 620 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 620 (1084)
.+.+.+=.+.....+-..+.|. +-|.++.|++..+.+++|++|-..+|||.. |..+..-..+.. +|+++
T Consensus 165 -----g~h~~IKpL~~n~k~i~WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey--~ITSv 233 (737)
T KOG1524|consen 165 -----GGHISIKPLAANSKIIRWRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY--AITSV 233 (737)
T ss_pred -----CCeEEEeecccccceeEEeccC---cEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc--ceeee
Confidence 3346666666666666777777 899999999999999999999999999975 444444444444 69999
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccC
Q 001403 621 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 700 (1084)
Q Consensus 621 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 700 (1084)
+|+|+ +.+++++. +++|+=.
T Consensus 234 a~npd-~~~~v~S~-nt~R~~~---------------------------------------------------------- 253 (737)
T KOG1524|consen 234 AFNPE-KDYLLWSY-NTARFSS---------------------------------------------------------- 253 (737)
T ss_pred eeccc-cceeeeee-eeeeecC----------------------------------------------------------
Confidence 99999 66776655 2333100
Q ss_pred ccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCC
Q 001403 701 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 780 (1084)
Q Consensus 701 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1084)
...+.|..++||+||..+..+...|.+.+--.-.
T Consensus 254 -----------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ie----------------------- 287 (737)
T KOG1524|consen 254 -----------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIE----------------------- 287 (737)
T ss_pred -----------------------CCccceEEEEEcCCCceeeccccCceEEEeeeeh-----------------------
Confidence 1345788899999999998888888775411000
Q ss_pred CccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeE
Q 001403 781 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI 860 (1084)
Q Consensus 781 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i 860 (1084)
...+ +.+. .........|.+-|+.++.+ ..+ ..+..+...+++- + +|+++. ...|
T Consensus 288 -------------q~l~-----~~n~-~~t~~~r~~I~vrdV~~~v~-d~L-E~p~rv~k~sL~Y--~-hLvvaT-s~qv 342 (737)
T KOG1524|consen 288 -------------QQLV-----SGNL-KATSKSRKSITVRDVATGVQ-DIL-EFPQRVVKFSLGY--G-HLVVAT-SLQV 342 (737)
T ss_pred -------------hhhh-----hccc-eeEeeccceEEeehhhhhHH-HHh-hCccceeeeeece--e-EEEEEe-ccEE
Confidence 0000 0000 11222245577777766544 222 2445666666654 3 333333 3468
Q ss_pred EEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCC
Q 001403 861 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 940 (1084)
Q Consensus 861 ~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 940 (1084)
++|.-......-.+.+....+.-+.-+. ..+++ ....+|.+|..+...... ..+.|... .....-..|-..
T Consensus 343 yiys~knwntpiiidgre~tr~lieq~e-k~fli--~dgsSi~lytyegR~~~n----p~~Pg~~~--dlL~~rtlsLan 413 (737)
T KOG1524|consen 343 YIYSEKNWNTPIIIDGREDTRNLIEQGE-KYFLI--LDGSSIWLYTYEGRLHLN----PRYPGSQI--DLLTWRTLSLAN 413 (737)
T ss_pred EEEecCCccCcEEEeccccchhHhhhhh-hheEE--ecCcEEEEEEecCceecC----CCCCCccc--ccccceeeeccc
Confidence 8887665544444444444332222211 12222 233446666655422111 01111110 011111233333
Q ss_pred CEEEE--EeC-CeEEEEEc-CCcceeeEee-cCCCCCEEEEEEc----cCCCEEEEEeCCCcEEEEEcCCCceeEEeccc
Q 001403 941 TRFLL--VHE-THLAIYEA-EELTCLKQWF-PISSVPISQATFS----CDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1011 (1084)
Q Consensus 941 ~~la~--~~d-~~i~vwd~-~~~~~~~~~~-~~h~~~v~~l~fs----~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~ 1011 (1084)
..|+. ..| .-+.++|. .+|+....-. ..|...|..++.. ++++.++.-..++.+.|=.++...-..++...
T Consensus 414 dtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~Ki 493 (737)
T KOG1524|consen 414 DTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKI 493 (737)
T ss_pred ceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhh
Confidence 44555 233 35888998 7776653311 2345555555543 45667777777777777665543222222211
Q ss_pred cccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 1012 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1012 ~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
... ...++|. |-..+++|-.|++..||=.+...
T Consensus 494 GTm----------VhtLawn--dttNiLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 494 GTM----------VHTLAWN--DTTNILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred hhh----------hhhhhhc--cccceeeeeccceEEEEEcCCcc
Confidence 111 2346777 57889999999999999886644
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=168.65 Aligned_cols=302 Identities=13% Similarity=0.160 Sum_probs=216.0
Q ss_pred cceEEEEEEecCCC-eEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC
Q 001403 726 ANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 804 (1084)
Q Consensus 726 ~~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 804 (1084)
..++..+.|.+++. .+++++.|..|++|.+........+ ........+. .|...|+++.|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------~~V~y~s~Ls--~H~~aVN~vRf~p 75 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------MKVEYLSSLS--RHTRAVNVVRFSP 75 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------eeEEEeeccc--CCcceeEEEEEcC
Confidence 35788889988877 8999999999999998754321110 0101112222 3999999999999
Q ss_pred CCCEEEEEeC-CeEEEEEcC--------C--------ceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 001403 805 NDAYLFSASG-GVISLYIVM--------T--------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 867 (1084)
Q Consensus 805 dg~~l~~~sd-g~i~vwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~ 867 (1084)
+|..||+|+| |.+.+|-.. + ......+.+|...|..++|+| ++.++++|+-|..+++||+..
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence 9999999995 889999765 2 344566788999999999999 999999999999999999999
Q ss_pred ceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee---eeecCCCCc------------cCCCCce
Q 001403 868 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR---SLQTPDGVM------------TLAPSET 932 (1084)
Q Consensus 868 ~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~~~~~------------~~~~~v~ 932 (1084)
|+.+..+.+|...|..++|.|-++++++-+.|...+++.+......... .+....++. ....-..
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 9999999999999999999999999999999987777776653321110 011110100 0012346
Q ss_pred EEEEccCCCEEEEE-----eCC-----eEEEEEcCCcceeeEeecCCCCCEEEEEEcc--------C----------CCE
Q 001403 933 HIQFHKDQTRFLLV-----HET-----HLAIYEAEELTCLKQWFPISSVPISQATFSC--------D----------CRM 984 (1084)
Q Consensus 933 ~~~~s~dg~~la~~-----~d~-----~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~--------d----------g~~ 984 (1084)
.++|+|||.+|++. ..+ +.++++-...+.....+++-..+...+.|+| + +-.
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 78999999999982 222 3566665543333333444456666777765 1 122
Q ss_pred EEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 985 VFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 985 l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
++.+ .-..|.|||.++...++......|.+ + ..++|++ ||..|+..+.||.+.+-.+...+
T Consensus 315 faiA-t~~svyvydtq~~~P~~~v~nihy~~-------i--TDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 315 FAIA-TKNSVYVYDTQTLEPLAVVDNIHYSA-------I--TDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEEe-ecceEEEeccccccceEEEeeeeeee-------e--cceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 4444 45689999999988877666333322 2 3789998 69999999999988877765544
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.3e-18 Score=164.17 Aligned_cols=278 Identities=15% Similarity=0.219 Sum_probs=206.1
Q ss_pred EEEEcCCCceeeeecccccCccccccceEEEEEcCCc-------cccc-ee--eeecCCCCCeEEEEEc-------CCCC
Q 001403 339 SMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGAC-------SMLF-KT--ALVRDPGVSVNRVVWS-------PDGS 401 (1084)
Q Consensus 339 ~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~-------~~~~-~~--~~~~~h~~~V~~v~fs-------pdg~ 401 (1084)
.+.|||||..|.+-+.| ..+.+|++... .... .. .+--.....|...+|- |+..
T Consensus 54 gckWSPDGSciL~~sed---------n~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSED---------NCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred cceeCCCCceEEeeccc---------CeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 46799999999998777 88999998421 1111 00 0000123456677774 6888
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccc---cEeEEEeecCCCcEEEEEEeCCCcEEEEEC-CCCcee--eEe--
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG---NVNDLAFSAPCKQISVITCGDDKTIKVWDA-VTGSRT--YSF-- 473 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~---~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~-~~g~~~--~~~-- 473 (1084)
++|+.+.+.-|++||.-+|+...... .-.|.. .-.+++|+|||. .|++| ....|+++|+ +.|+.- +..
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlfaG-ykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLFAG-YKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEeec-ccceEEEeeccCCCCCCcchhhhh
Confidence 99999999999999999998654322 223444 346899999999 56655 4789999998 555432 222
Q ss_pred ---ccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEE
Q 001403 474 ---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 550 (1084)
Q Consensus 474 ---~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 550 (1084)
.+..+.+.+++|+|. +...++.++.-.++-||.-....+...+-++.+.|+-+.|.+||+.|++++.- +..|.
T Consensus 201 ~~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKIL 276 (406)
T ss_pred cccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC---CCeEE
Confidence 233677888899876 44689999999999999999999999999999999999999999999998753 55699
Q ss_pred EecCCC-ceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC-CeEEEEEcCCCCCCCcceEEEecCCCE
Q 001403 551 EWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTL 628 (1084)
Q Consensus 551 ~wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~ 628 (1084)
.||++. +.++..+..|......-.-....|++++|++|+.||.|++||+++ |.....+..+.. .++.++++|--.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCcccce
Confidence 999985 555666666652112223345578899999999999999999998 776666665544 4889999998778
Q ss_pred EEEEECC
Q 001403 629 LAVIANE 635 (1084)
Q Consensus 629 l~~~~~d 635 (1084)
+++++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 8877654
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-17 Score=161.31 Aligned_cols=338 Identities=12% Similarity=0.153 Sum_probs=230.7
Q ss_pred EEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEE-EECCCcEEEEECCCCeE
Q 001403 526 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL 604 (1084)
Q Consensus 526 ~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~ 604 (1084)
-.+|||+|+++|+++ +..+.+-|..+-+..+.+... +.|..+.|..|.-++++ ...++.|.+|++...+.
T Consensus 13 ~c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew 83 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW 83 (447)
T ss_pred ceeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeeccee
Confidence 357999999999997 446888898887776666654 37888999999888877 56788999999998888
Q ss_pred EEEEcCCCCCCCcceEEEecCCCEEEEEE-CCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEec
Q 001403 605 LTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 683 (1084)
Q Consensus 605 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~ 683 (1084)
...++... ..+..++|||||+.+...+ .+-.|.+|.+.+.+......
T Consensus 84 ~ckIdeg~--agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~------------------------------ 131 (447)
T KOG4497|consen 84 YCKIDEGQ--AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH------------------------------ 131 (447)
T ss_pred EEEeccCC--CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc------------------------------
Confidence 87777543 3588999999997665554 48889999988764332110
Q ss_pred CCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcC
Q 001403 684 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 763 (1084)
Q Consensus 684 ~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~ 763 (1084)
....+..++|+|||++.+..+.....-.+++.
T Consensus 132 -----------------------------------------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~------- 163 (447)
T KOG4497|consen 132 -----------------------------------------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS------- 163 (447)
T ss_pred -----------------------------------------cccCceeEEECCCCceeeeeecccHHHHHHHH-------
Confidence 11234567888888876665543111111100
Q ss_pred cccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe---CCeEEEEEcCCceeEEEEcCCCCCeEE
Q 001403 764 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATS 840 (1084)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~ 840 (1084)
..+-|.+-. .+.+ ..-..+.+.|+|||..||+-. +-.|..|.. .-.+..
T Consensus 164 -------~c~~W~ll~-----~f~~----dT~DltgieWsPdg~~laVwd~~Leykv~aYe~------------~lG~k~ 215 (447)
T KOG4497|consen 164 -------SCKAWILLK-----EFKL----DTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER------------GLGLKF 215 (447)
T ss_pred -------hhHHHHHHH-----hcCC----CcccccCceECCCCcEEEEecchhhheeeeeee------------ccceeE
Confidence 011122111 1111 344567789999999888765 233333332 235778
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEcCCcee--------------------------------------------------
Q 001403 841 LAFNPHDNNVIAIGMDDSTILIYNARSSEV-------------------------------------------------- 870 (1084)
Q Consensus 841 l~~s~~d~~~la~g~~dg~i~iwd~~~~~~-------------------------------------------------- 870 (1084)
++|+| .+++|++|+.|+.+||.+--+.+.
T Consensus 216 v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~ 294 (447)
T KOG4497|consen 216 VEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESET 294 (447)
T ss_pred EEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchh
Confidence 89999 899999999999988865433221
Q ss_pred ----------eeeec------ccccCEEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCceeeeeeeecCCCCccCCCCce
Q 001403 871 ----------ISKLE------GHSKRVTGLVFSDALNILVSSGGD--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 932 (1084)
Q Consensus 871 ----------~~~l~------~h~~~V~~l~~spd~~~l~s~s~d--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 932 (1084)
+..++ .....+..++||+|..+++|-... +.+-+||+..-+ +...+.... .|.
T Consensus 295 ~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~-----l~avLiQk~----pir 365 (447)
T KOG4497|consen 295 IYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK-----LHAVLIQKH----PIR 365 (447)
T ss_pred hhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh-----hhhhhhhcc----cee
Confidence 01111 112346779999999999986443 568999999733 222222222 589
Q ss_pred EEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCC
Q 001403 933 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 992 (1084)
Q Consensus 933 ~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg 992 (1084)
...|.|....|++. ....+++|......++..... .-.|..+.|.-+|..++..+.|.
T Consensus 366 af~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~--GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 366 AFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKK--GFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred EEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCC--CceeeeEEecCCCcEEEEEcCCc
Confidence 99999999888884 566799999987666665444 47899999999999999998885
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-18 Score=174.39 Aligned_cols=242 Identities=13% Similarity=0.199 Sum_probs=183.8
Q ss_pred CCceeeeecccccCccccccceEEEEEcCCccccceee------------------eecCCCCCeEEEEEcCC-CCEEEE
Q 001403 345 VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA------------------LVRDPGVSVNRVVWSPD-GSLLGV 405 (1084)
Q Consensus 345 dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~------------------~~~~h~~~V~~v~fspd-g~~las 405 (1084)
-|+|+|.|..| ..|.|||+.-....+... ...+|+..|.+++|+.+ ...||+
T Consensus 191 ~gNyvAiGtmd---------p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaS 261 (463)
T KOG0270|consen 191 AGNYVAIGTMD---------PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLAS 261 (463)
T ss_pred CcceEEEeccC---------ceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEe
Confidence 46899999888 899999985222211111 23479999999999974 568899
Q ss_pred EeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEee
Q 001403 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 485 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~ 485 (1084)
|+.|.+|++||+.+|++.. .+..|.+.|.+++|.|.... +|++|+.|++|.+.|.+........-...+.|-.++|
T Consensus 262 gsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w 337 (463)
T KOG0270|consen 262 GSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAW 337 (463)
T ss_pred cCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEEeccceEEEEe
Confidence 9999999999999998766 67789999999999998776 8999999999999999854333222235677889999
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCC-CceEeecCCCCeEEEEEEcCCCCEE-EEEeeCCCCCeeEEEecCCCceEeeee
Q 001403 486 HAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWNESEGAIKRTY 563 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~d~~~l-~~~~~~~~~~~~i~~wd~~~~~~~~~~ 563 (1084)
.+... ..++++..||+|+-+|++.. ++...+..|..+|.++++++....+ ++++. +..|.+|++..-.....
T Consensus 338 ~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~----d~~Vklw~~~~~~~~~v- 411 (463)
T KOG0270|consen 338 DPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAST----DKVVKLWKFDVDSPKSV- 411 (463)
T ss_pred cCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccc----cceEEEEeecCCCCccc-
Confidence 77643 57788899999999999987 6788999999999999999877654 44443 77899999875433211
Q ss_pred eccccccCceEEEEEcCCCCE-EEEEECCCcEEEEECCCCeEE
Q 001403 564 QGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMNKVQLL 605 (1084)
Q Consensus 564 ~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~ 605 (1084)
..|...-+...|.++.|+-.. ++.|+..+.++|||+.+...+
T Consensus 412 ~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 412 KEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 122211244677778887655 455788888999999876543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-16 Score=164.86 Aligned_cols=491 Identities=13% Similarity=0.177 Sum_probs=290.2
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEE--Ec------CCCCEE
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV--WS------PDGSLL 403 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~--fs------pdg~~l 403 (1084)
-|+.-|.|+.|+.+...+.++..+ ..+.-||+.+.+..... . ....|.... ++ .....+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh---------~~~~~~~~~~~s~~~~~-~---p~df~pt~~h~~~rs~~~g~~~d~~ 78 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDH---------QIFKWSDVSRDSVEVAK-L---PDDFVPTDMHLGGRSSGGGKGSDTL 78 (737)
T ss_pred ccceeEEeecccccceEEEeccCc---------eEEEeecccchhhhhhh-C---CcccCCccccccccccCCCCCcceE
Confidence 466677899999988877775433 44455555543322111 0 111111111 11 123578
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEE
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 483 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~ 483 (1084)
+.++.||.+.|-+-... .......|.+.|.+-.|+|||. -|+++++||.|++|. ++|....++.....+|+|+
T Consensus 79 ~i~s~DGkf~il~k~~r----VE~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 79 LICSNDGRFVILNKSAR----VERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred EEEcCCceEEEecccch----hhhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence 88999999888875432 2225779999999999999999 799999999999999 8888777777788899999
Q ss_pred eecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeee
Q 001403 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 563 (1084)
Q Consensus 484 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 563 (1084)
+|.|+.+ +.+++.+ +.+.+=.+...........|.+-|.++.|++..+.+++++. +....+||.. |..+..-
T Consensus 152 ~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~S 223 (737)
T KOG1524|consen 152 RWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFTS 223 (737)
T ss_pred EECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-CcccccC
Confidence 9977654 3455443 45555566666778888999999999999999999999986 7779999965 5555555
Q ss_pred eccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 564 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 564 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
..|. .+|++++|+|+ +.++.++. .+++ +.. .....|..++||+||..+++|+..|.+.+-..
T Consensus 224 ~~~e---y~ITSva~npd-~~~~v~S~-nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 224 AAEE---YAITSVAFNPE-KDYLLWSY-NTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred Chhc---cceeeeeeccc-cceeeeee-eeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 5566 89999999999 56666554 2333 211 12345889999999999999999888765443
Q ss_pred CCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCc
Q 001403 644 PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK 723 (1084)
Q Consensus 644 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 723 (1084)
-..+... +..-++......+.+-|+.. ..+..+.+|
T Consensus 286 ieq~l~~---------------------------------------~n~~~t~~~r~~I~vrdV~~---~v~d~LE~p-- 321 (737)
T KOG1524|consen 286 IEQQLVS---------------------------------------GNLKATSKSRKSITVRDVAT---GVQDILEFP-- 321 (737)
T ss_pred ehhhhhh---------------------------------------ccceeEeeccceEEeehhhh---hHHHHhhCc--
Confidence 3221110 01111111112222222221 111112111
Q ss_pred cccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEec
Q 001403 724 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 803 (1084)
Q Consensus 724 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 803 (1084)
..+..... .-.+|+++.+. .+++|.-..- .++.+.|..... +.-+.-
T Consensus 322 ---~rv~k~sL--~Y~hLvvaTs~-qvyiys~knw-----------ntpiiidgre~t---------------r~lieq- 368 (737)
T KOG1524|consen 322 ---QRVVKFSL--GYGHLVVATSL-QVYIYSEKNW-----------NTPIIIDGREDT---------------RNLIEQ- 368 (737)
T ss_pred ---cceeeeee--ceeEEEEEecc-EEEEEecCCc-----------cCcEEEeccccc---------------hhHhhh-
Confidence 23333332 22334444432 3444431110 011111211111 100000
Q ss_pred CCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCC-----eEEEEEcCCCCcEEEEE--eCCCeEEEEEc-CCceeee--e
Q 001403 804 KNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT-----ATSLAFNPHDNNVIAIG--MDDSTILIYNA-RSSEVIS--K 873 (1084)
Q Consensus 804 ~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~-----i~~l~~s~~d~~~la~g--~~dg~i~iwd~-~~~~~~~--~ 873 (1084)
..+++......++.+|..+. +.......+... -..+...- ..|+.- .+...+.+||. .+|+... .
T Consensus 369 -~ek~fli~dgsSi~lytyeg-R~~~np~~Pg~~~dlL~~rtlsLan---dtLaird~ad~kvlhlFd~istgk~qgDgk 443 (737)
T KOG1524|consen 369 -GEKYFLILDGSSIWLYTYEG-RLHLNPRYPGSQIDLLTWRTLSLAN---DTLAIRDNADPKVLHLFDLISTGKRQGDGK 443 (737)
T ss_pred -hhhheEEecCcEEEEEEecC-ceecCCCCCCcccccccceeeeccc---ceEEeecCCCCeeEEeccCCCCCcccCCcc
Confidence 11233333345566766542 222222211111 12233322 244443 23447888998 7776552 2
Q ss_pred ecccccCEEEEEEc----CCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCC
Q 001403 874 LEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 949 (1084)
Q Consensus 874 l~~h~~~V~~l~~s----pd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~ 949 (1084)
+-.|...|..++.. ++.+.++.-...+.+.|=.+++-... +........|..++|+...+.|.--.|+
T Consensus 444 ~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgke--------e~I~KiGTmVhtLawndttNiLcglqDt 515 (737)
T KOG1524|consen 444 SLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKE--------EEIYKIGTMVHTLAWNDTTNILCGLQDT 515 (737)
T ss_pred ccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCch--------hhhhhhhhhhhhhhhccccceeeeeccc
Confidence 22366777766665 45678888888888888777652211 1111112358899999988888777999
Q ss_pred eEEEEEcCC
Q 001403 950 HLAIYEAEE 958 (1084)
Q Consensus 950 ~i~vwd~~~ 958 (1084)
.+.||-..+
T Consensus 516 ~fsVWy~pn 524 (737)
T KOG1524|consen 516 CFSVWYYPN 524 (737)
T ss_pred eEEEEEcCC
Confidence 999998764
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-18 Score=169.13 Aligned_cols=175 Identities=21% Similarity=0.375 Sum_probs=149.0
Q ss_pred ccceeeecccCCCCceEEEEcCCC-ceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC-C
Q 001403 323 PKTVAQTLIEGSSSPMSMDFHPVQ-HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-G 400 (1084)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg-~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd-g 400 (1084)
....+.++.+|.++=.+++|||-. ..|+ +|+|. +.|++|...++........+.+|+..|-.++|||. .
T Consensus 200 ~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll-------sGDc~--~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~ 270 (440)
T KOG0302|consen 200 EFRPLFTFNGHKGEGYGLDWSPIKTGRLL-------SGDCV--KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED 270 (440)
T ss_pred ccCceEEecccCccceeeecccccccccc-------cCccc--cceEeeeeccCceeecCccccccccchhhhccCCccC
Confidence 356778899999999999999922 1233 46766 89999999998877777778889999999999994 5
Q ss_pred CEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC---CCceeeEeccCC
Q 001403 401 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHG 477 (1084)
Q Consensus 401 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~---~g~~~~~~~~h~ 477 (1084)
..||+|+.||+|+|||+..+..-..+ ..+.|.+.|+.+.|+.+-. +|++|+.||+++|||++ .++++.+|+.|.
T Consensus 271 ~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk 347 (440)
T KOG0302|consen 271 GVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQPVATFKYHK 347 (440)
T ss_pred ceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCcceeEEecc
Confidence 68999999999999999988543333 3479999999999998887 89999999999999987 467889999999
Q ss_pred CcEEEEeecccCCCcEEEEEecCCeEEEEECCC
Q 001403 478 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 510 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 510 (1084)
.+|+++.|+|..+ ..|++++.|..|.+||+..
T Consensus 348 ~pItsieW~p~e~-s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 348 APITSIEWHPHED-SVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CCeeEEEeccccC-ceEEeccCCCcEEEEEeec
Confidence 9999999998765 5888899999999999864
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7e-17 Score=161.97 Aligned_cols=237 Identities=14% Similarity=0.210 Sum_probs=181.1
Q ss_pred CCCEEEEE---eCCCEEEEEEc-cCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-------
Q 001403 399 DGSLLGVA---YSKHIVQLYAY-HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG------- 467 (1084)
Q Consensus 399 dg~~las~---~~dg~v~iwd~-~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g------- 467 (1084)
+.++||.. +..|...+--+ ++|+.-...-.+.||.++|..++|+|-+.+ .++|||+|.+|.||.+..+
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~vW~IPe~~l~~~lt 121 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVMVWQIPENGLTRDLT 121 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEEEEECCCcccccCcc
Confidence 45566654 22223333222 345444444467799999999999998877 8999999999999998754
Q ss_pred ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCe
Q 001403 468 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 547 (1084)
Q Consensus 468 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 547 (1084)
+.+..+.+|...|..++|+|... +.|++++.|.+|.+|++.+++....+. |...|.++.|+.||.++++.+. +.
T Consensus 122 epvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttck----DK 195 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCK----DK 195 (472)
T ss_pred cceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecc----cc
Confidence 34677899999999999999865 689999999999999999999988887 8889999999999999999987 55
Q ss_pred eEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE----CCCcEEEEECCCCeE---EEEEcCCCCCCCcceE
Q 001403 548 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL---LTTIDAGGGLPENPRI 620 (1084)
Q Consensus 548 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~v 620 (1084)
.|++||.++++.+..-.+|. +..-..+.|-.++. +++.+ .+..+-+||..+-+. ...+... ..|.--
T Consensus 196 kvRv~dpr~~~~v~e~~~he--G~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS---nGvl~P 269 (472)
T KOG0303|consen 196 KVRVIDPRRGTVVSEGVAHE--GAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTS---NGVLLP 269 (472)
T ss_pred eeEEEcCCCCcEeeeccccc--CCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccC---CceEEe
Confidence 69999999999998887777 34455566778888 55543 678899998765332 3333322 235556
Q ss_pred EEecCCCEEEEEE-CCCeEEEEEcCCCCe
Q 001403 621 CFNKNGTLLAVIA-NENRIKILETPESNS 648 (1084)
Q Consensus 621 ~~s~~~~~l~~~~-~dg~i~iwd~~~~~~ 648 (1084)
-|.+|.+.+..++ .|+.||-|.+....+
T Consensus 270 FyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 270 FYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred eecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 6788888776554 599999999987653
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.4e-16 Score=144.57 Aligned_cols=288 Identities=13% Similarity=0.140 Sum_probs=198.3
Q ss_pred eEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCC
Q 001403 728 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 807 (1084)
Q Consensus 728 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 807 (1084)
.|.+-+++|.+++++++..+|.|.+..+..-.... . -..|+ ... .+..+|..++..++|. ..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~s---a----------~~~gk-~~i--v~eqahdgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGS---A----------EPPGK-LKI--VPEQAHDGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccc---c----------CCCCC-cce--eeccccCCCeeeeeee--hh
Confidence 35556889999999999999999999876422100 0 00111 111 1123599999999997 56
Q ss_pred EEEEEeCCeEEEEEcCCcee------EEEEc-------CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee
Q 001403 808 YLFSASGGVISLYIVMTFKT------ILTIM-------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 874 (1084)
Q Consensus 808 ~l~~~sdg~i~vwd~~~~~~------~~~~~-------~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l 874 (1084)
+|.+++||.|+-|....... +.... ..-..|+++-..|..+.++. ++.|+.++-||+++|+...++
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEEE
Confidence 88888899999987643221 11111 12357899999995454544 558999999999999999999
Q ss_pred cccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCC--CCceEEEEccCCCEEEEEeCCeEE
Q 001403 875 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA--PSETHIQFHKDQTRFLLVHETHLA 952 (1084)
Q Consensus 875 ~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~dg~~la~~~d~~i~ 952 (1084)
+||++.|.+++--.....+.||++||++++||.++++.... +.......-.. ..-.-.+..-+..++++|....+.
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~--ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~ls 230 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM--IEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLS 230 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE--eccccChhhcCcccCceeEEEeccCceEEecCCCcee
Confidence 99999999999855567788999999999999999775432 22211111100 011224556678899999999999
Q ss_pred EEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECC
Q 001403 953 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHP 1032 (1084)
Q Consensus 953 vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p 1032 (1084)
+|.+++.++...+.. ..++..+.|-.| .+++++..+.|.-|.+. |.+...+. .+ ....++.+...+|
T Consensus 231 lwhLrsse~t~vfpi--pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~--s~~c~s~s~~~~p 297 (325)
T KOG0649|consen 231 LWHLRSSESTCVFPI--PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIP------VE--STACYSASWQTSP 297 (325)
T ss_pred EEeccCCCceEEEec--ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEecc------CC--ccceeeecccCCc
Confidence 999999988877543 678888888765 67778888899999886 44443333 11 1123444444555
Q ss_pred CCCCEEEEEeCCCcEEEEc
Q 001403 1033 LKPTQFAVGLTNGEVYVIE 1051 (1084)
Q Consensus 1033 ~d~~~l~~~~~dg~v~vw~ 1051 (1084)
-..|-.++..+.++|+.
T Consensus 298 --~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 298 --IKFISIAGFSNKLHILK 314 (325)
T ss_pred --eEEEEecccceeeeeee
Confidence 45666777777887764
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.6e-18 Score=175.09 Aligned_cols=302 Identities=16% Similarity=0.215 Sum_probs=237.2
Q ss_pred ceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC--CCCE
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSL 402 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~ 402 (1084)
.+...|..|.+.|..|-|...|..|++|+.| ..|.+||+......... ..||...|....|-| +.+.
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD---------~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~t 201 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDD---------LQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRT 201 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCcc---------ceEEeehhhccCccccc--ccccccchhhhhccCCCCCcC
Confidence 4556789999999999999999999999988 99999999987776554 678999999999988 5678
Q ss_pred EEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe---ccCCC-
Q 001403 403 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---EGHGA- 478 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~---~~h~~- 478 (1084)
+++++.||.|++=.+...........+..|.++|.-++.-|+..+ -|.+++.|+.+.-.|++++.....+ ..+..
T Consensus 202 i~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~ 280 (559)
T KOG1334|consen 202 IVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE 280 (559)
T ss_pred ceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccCCcc
Confidence 999999999998877644444434467789999999999999887 7999999999999999887654333 22333
Q ss_pred --cEEEEeecccCCCcEEEEEecCCeEEEEECCCCCce------Eee------cCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001403 479 --PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR------VDY------DAPGLGCTRMAYSANGRRLFSCGTSKE 544 (1084)
Q Consensus 479 --~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~------~~~------~~~~~~i~~~~~s~d~~~l~~~~~~~~ 544 (1084)
...+++..|.. ...+++++.|..+++||.+..... ..+ ......|++++|+.++.-|++...
T Consensus 281 ~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn--- 356 (559)
T KOG1334|consen 281 RVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN--- 356 (559)
T ss_pred ceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec---
Confidence 45777777654 358999999999999998653322 111 123347999999988777776665
Q ss_pred CCeeEEEecCCC--c----------eEe-eeeeccccccCceEEEEE-cCCCCEEEEEECCCcEEEEECCCCeEEEEEcC
Q 001403 545 GESFLVEWNESE--G----------AIK-RTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 610 (1084)
Q Consensus 545 ~~~~i~~wd~~~--~----------~~~-~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 610 (1084)
+-.|+++.... | ..+ +.+++|... ..|..+-| .|...++++|+.-|.|.||+-.+++.++.+.+
T Consensus 357 -De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg 434 (559)
T KOG1334|consen 357 -DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG 434 (559)
T ss_pred -ccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc
Confidence 44488885432 2 222 338888733 34777754 68889999999999999999999999999987
Q ss_pred CCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 611 GGGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 611 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
..+ .|+|+.-+|--..||+.+-|..|+||...+.
T Consensus 435 Dr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 435 DRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred ccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 766 5899999999999999999999999987544
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-15 Score=163.97 Aligned_cols=603 Identities=12% Similarity=0.114 Sum_probs=352.8
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC------C------CEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD------G------SLL 403 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd------g------~~l 403 (1084)
.-.++.|+|.| ++|.|+. ..|.|-|..+-.... .+.-|...|+.|.|.|- + -+|
T Consensus 17 N~~A~Dw~~~G-LiAygsh----------slV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lli 82 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH----------SLVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLI 82 (1062)
T ss_pred cccccccCccc-eEEEecC----------ceEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeE
Confidence 57788999987 5666531 566777765543332 25568999999999872 1 267
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeec---CCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 480 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~---d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v 480 (1084)
|++...|.|.+||...+..+. .+..|..+|..++|-+ +.+. +|+.-....++.+|+..+|+...+........
T Consensus 83 AsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iL 158 (1062)
T KOG1912|consen 83 ASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKFWKYDYSHEIL 158 (1062)
T ss_pred EeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCceeeccccCCcce
Confidence 888889999999999886555 6778899999999965 3434 45555557899999999999988877666777
Q ss_pred EEEeecccCCCcEEEEEecCCeEEEEECCCCC------ceEeecCC-CC-------------------------eEEEEE
Q 001403 481 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDYDAP-GL-------------------------GCTRMA 528 (1084)
Q Consensus 481 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~~-~~-------------------------~i~~~~ 528 (1084)
.++.+.|-.. ..+..-+..|.+.+-+.-... ....+... .. -...++
T Consensus 159 s~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~fa 237 (1062)
T KOG1912|consen 159 SCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFA 237 (1062)
T ss_pred eeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhh
Confidence 7788876644 344444555666555442111 11111111 00 012356
Q ss_pred EcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCC--CEEEEEECCCcEEEEECCC-----
Q 001403 529 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKIWDMNK----- 601 (1084)
Q Consensus 529 ~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~----- 601 (1084)
|+|.-+.++.... ...+.++|++-..++....-.. +.+.-+.+-|++ ..+++.-.||.+.+|-.+.
T Consensus 238 f~p~~rn~lfi~~----prellv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f 310 (1062)
T KOG1912|consen 238 FSPHWRNILFITF----PRELLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEF 310 (1062)
T ss_pred cChhhhceEEEEe----ccceEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccc
Confidence 7886655554444 3339999999888888877666 666667776664 5788999999999997654
Q ss_pred -----------CeEEEEEcCCCCCCCcceEEEecC-CCEEEEEECCCeEEEEEcCCCCeeeec-----------------
Q 001403 602 -----------VQLLTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESNSVDAA----------------- 652 (1084)
Q Consensus 602 -----------~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~----------------- 652 (1084)
++....+..-.... ....+..|. ...+++...+|...+|.+.+++.-...
T Consensus 311 ~~~~~~l~~dl~~Q~~~vr~m~~~r-p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~ 389 (1062)
T KOG1912|consen 311 KKPNASLSMDLGEQVHVVRPMEEFR-PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLST 389 (1062)
T ss_pred cccchhhccccccceEEEeechhcc-cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCce
Confidence 22222221111111 112222332 445555566788888888765321111
Q ss_pred --------------cccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceee
Q 001403 653 --------------GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 718 (1084)
Q Consensus 653 --------------~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 718 (1084)
.+|.....+....|-+...-.....+ ......--.+++.|...|+|.++|+.++.......
T Consensus 390 ~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~----~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fs- 464 (1062)
T KOG1912|consen 390 KLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPG----GNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFS- 464 (1062)
T ss_pred eehhhccccchhhcCCCCCCceeeecccCcccceeecCCC----CCccceeeeeEEeecCCceEEEEEecchhhhhhhc-
Confidence 12222333333332222111100000 00001112457889999999999987654443333
Q ss_pred ccCCccccceEEEEEEecCCCeEEEeecC--CceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCC
Q 001403 719 LLPSKVKANKISRLTYNNGGQAIFALASN--GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 796 (1084)
Q Consensus 719 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1084)
.|...|.++.|......+-.+.+. ..-.. -...+.+-|+.+|.......+++ ..+.+
T Consensus 465 -----vht~~VkgleW~g~sslvSfsys~~n~~sg~---------------vrN~l~vtdLrtGlsk~fR~l~~-~desp 523 (1062)
T KOG1912|consen 465 -----VHTSLVKGLEWLGNSSLVSFSYSHVNSASGG---------------VRNDLVVTDLRTGLSKRFRGLQK-PDESP 523 (1062)
T ss_pred -----ccccceeeeeeccceeEEEeeeccccccccc---------------eeeeEEEEEcccccccccccCCC-CCcCc
Confidence 388999999998777644333221 00000 01245666777777554443433 46889
Q ss_pred ccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEc-CC---------------CCcEEEEEeCCCe
Q 001403 797 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PH---------------DNNVIAIGMDDST 859 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-~~---------------d~~~la~g~~dg~ 859 (1084)
|+.+..|..|+|++..- +.-+.+||+.+..+++.....-.-|+.++|+ |. ..+.++..+ +.
T Consensus 524 I~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds--~e 601 (1062)
T KOG1912|consen 524 IRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDS--VE 601 (1062)
T ss_pred ceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhceeeecc--cc
Confidence 99999999999999997 6789999998877666554444558888888 31 012233233 22
Q ss_pred EEEEEcCC-------cee-eeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCc
Q 001403 860 ILIYNARS-------SEV-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE 931 (1084)
Q Consensus 860 i~iwd~~~-------~~~-~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 931 (1084)
.+++.+.- +.. ....+...-.+..++| .+..|+.|..+|.+.+||+....... ......+.. ..
T Consensus 602 s~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg---~~d~p~~ra---~~ 673 (1062)
T KOG1912|consen 602 SRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRG---VRDSPDPRA---HS 673 (1062)
T ss_pred chheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccC---ccCCCCchh---hh
Confidence 33333221 111 0111111122334566 46789999999999999987632111 111111111 22
Q ss_pred eEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCC--CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 001403 932 THIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSV--PISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1004 (1084)
Q Consensus 932 ~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~--~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~ 1004 (1084)
....+-|....+++-...-+-+||.+....+..+ .+.+. .+..+.+......++ ..|.++|+-.......
T Consensus 674 l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si-ag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m~mks~ 745 (1062)
T KOG1912|consen 674 LTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI-AGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVMPMKSP 745 (1062)
T ss_pred eecccCCCCceEEEEecCcceecccccceeeeee-ccCCcceEEEEEEecccCceec--CCCCceeEEeccccCC
Confidence 2333344433444445566889999887777665 34333 444445544444333 3455777766655443
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-18 Score=186.50 Aligned_cols=285 Identities=20% Similarity=0.292 Sum_probs=219.7
Q ss_pred eeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE
Q 001403 327 AQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 406 (1084)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~ 406 (1084)
++.|.||.+.|.|+.|-..|+|+++|+.| ..++||..++...... ..||.+.|+.++.+.+..++|++
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd---------~lvKiwS~et~~~lAs---~rGhs~ditdlavs~~n~~iaaa 250 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDD---------RLVKIWSMETARCLAS---CRGHSGDITDLAVSSNNTMIAAA 250 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCcc---------ceeeeeeccchhhhcc---CCCCccccchhccchhhhhhhhc
Confidence 45688999999999999999999999988 9999999888766544 78999999999999999999999
Q ss_pred eCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE---ecc-CCCcEEE
Q 001403 407 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS---FEG-HGAPVYS 482 (1084)
Q Consensus 407 ~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~---~~~-h~~~v~~ 482 (1084)
+.|..|++|.+.++..+. .+.+|++.|++++|+|- .+.+.||++++||.+=.-.++. +.. ...-+.+
T Consensus 251 S~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s 321 (1113)
T KOG0644|consen 251 SNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDS 321 (1113)
T ss_pred ccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCcccccceee
Confidence 999999999999997766 78899999999999994 3678899999999871111111 111 1234455
Q ss_pred EeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCC-EEEEEeeCCCCCeeEEEecCCCceEee
Q 001403 483 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESEGAIKR 561 (1084)
Q Consensus 483 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~-~l~~~~~~~~~~~~i~~wd~~~~~~~~ 561 (1084)
+.| ..++..++|++.|+.-..|.+..... +...+.-+.++.|.. +.+++- .+..+.+|++.+|...+
T Consensus 322 ~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwnl~~g~l~H 389 (1113)
T KOG0644|consen 322 ILF--ENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWNLYTGQLLH 389 (1113)
T ss_pred eec--cccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeee----eeeEeeeeecccchhhh
Confidence 555 44667889999999988886542111 111112222222322 222222 15668899999999999
Q ss_pred eeeccccccCceEEEEEcCCCCEEE-EEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEE
Q 001403 562 TYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 640 (1084)
Q Consensus 562 ~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 640 (1084)
.+.+|. ..+..+.++|-+..++ +++.||...|||+-.|.+++..... + ..+....||+||..++...+-|.++|
T Consensus 390 ~l~ghs---d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~lsd~hgql~i 464 (1113)
T KOG0644|consen 390 NLMGHS---DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALSDDHGQLYI 464 (1113)
T ss_pred hhcccc---cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEecCCCCCceEE
Confidence 999998 8999999999877665 5899999999999999888777633 2 24677899999999999999999999
Q ss_pred EEcCCCCee
Q 001403 641 LETPESNSV 649 (1084)
Q Consensus 641 wd~~~~~~~ 649 (1084)
.....++..
T Consensus 465 ~g~gqs~s~ 473 (1113)
T KOG0644|consen 465 LGTGQSKSQ 473 (1113)
T ss_pred eccCCCccc
Confidence 987766443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=153.19 Aligned_cols=258 Identities=17% Similarity=0.225 Sum_probs=184.3
Q ss_pred ecccCCCCceEEEEcCCC-ceeeeecccccCccccccceEEEEEcCCcccc-----ce--eeeecCCCCCeEEEEEcCCC
Q 001403 329 TLIEGSSSPMSMDFHPVQ-HTLLLGLWDVNSGQKLFIRNFKVWDIGACSML-----FK--TALVRDPGVSVNRVVWSPDG 400 (1084)
Q Consensus 329 ~l~~h~~~V~~v~~spdg-~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~-----~~--~~~~~~h~~~V~~v~fspdg 400 (1084)
+|..|.++|+.++-||-. +.|++...|...... .....||.+...... .+ ..+-..+-+.|.|+.|.|++
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~v--l~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGV--LTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcc--eeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 457788999999999955 455554433222222 256789998643222 11 11112355699999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCcccccee---eeecccccEeEEEeec--CCCcEEEEEEeCCCcEEEEECCCCceeeEe-c
Q 001403 401 SLLGVAYSKHIVQLYAYHGGSDARQQL---EIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSF-E 474 (1084)
Q Consensus 401 ~~las~~~dg~v~iwd~~~~~~~~~~~---~l~~h~~~V~~l~~s~--d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~-~ 474 (1084)
..+|+-. |..|.+|+++.+..+.... .-.+|....++-+||| ||. .+++.+ |+++..||+++..+...+ .
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTMKKNNSIED 211 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccchhhhcchhh
Confidence 9999887 6679999999876532111 1113566788899998 555 566555 899999999998887777 5
Q ss_pred cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCC-ceEeecCCCCeEEEEEEcCCCCE-EEEEeeCCCCCeeEEEe
Q 001403 475 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRR-LFSCGTSKEGESFLVEW 552 (1084)
Q Consensus 475 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~-l~~~~~~~~~~~~i~~w 552 (1084)
.|...|..+.|+|+.. .+|++++.||.|++||.+..+ +...+..|.+++.++.|+|.-.. +++++. +..|.+|
T Consensus 212 AHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S----Ds~V~Ls 286 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS----DSAVNLS 286 (370)
T ss_pred hhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC----CceeEEE
Confidence 6889999999987643 689999999999999998755 46788999999999999996554 445543 5567777
Q ss_pred cCCCc-----------------------------eEeeeeeccccccCceEEEEEcCCCCEE-EEEECCCcEEEEECC
Q 001403 553 NESEG-----------------------------AIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMN 600 (1084)
Q Consensus 553 d~~~~-----------------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~ 600 (1084)
...+- ..+.++..|. +.|++++|+.-..++ ++-+.||.+.|=.+.
T Consensus 287 ca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE---DSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 287 CASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE---DSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eccccccccccccccccccCcchhhHHhcccccccccccccccc---cceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 43311 1123444555 899999999877766 557899998876654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-15 Score=149.38 Aligned_cols=242 Identities=11% Similarity=0.146 Sum_probs=190.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC
Q 001403 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 467 (1084)
Q Consensus 388 ~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g 467 (1084)
...+..+.|+.|+..|..|+.|| -++|+.+.-.... ........|-.+-||..= +.+++...-+.+++.+.+.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSSL--vaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSSL--VAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccce--eEEEecCCCceEEEEEcccC
Confidence 45677788999999999999999 7888877643211 222233356667777542 13444433346999999999
Q ss_pred ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecC---CCCeEEEEEEcCCCCEEEEEeeCCC
Q 001403 468 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKE 544 (1084)
Q Consensus 468 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~d~~~l~~~~~~~~ 544 (1084)
..+..+. ...+|.++.++. +.|+.+-.+. |.|||++..+.+.++.. +...+.++++++.+.+++.-+...
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t- 151 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT- 151 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC-
Confidence 8888776 566788888832 4666665554 99999999988776544 344677777777888998765433
Q ss_pred CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCc-EEEEECCCCeEEEEEcCCCCCCCcceEEEe
Q 001403 545 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFN 623 (1084)
Q Consensus 545 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 623 (1084)
.|.|.+||..+-+.+..+..|. +.+.+++|+++|..||++++.|+ |||+.+.+|+.+..+........|.+++|+
T Consensus 152 -~GdV~l~d~~nl~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 152 -SGDVVLFDTINLQPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred -CceEEEEEcccceeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 5569999999999999999888 99999999999999999999987 699999999999999877666678999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCC
Q 001403 624 KNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 624 ~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
|++.+|++.++.++|.+|.+...
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCeEEEecCCCeEEEEEeccc
Confidence 99999999999999999998854
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=174.73 Aligned_cols=260 Identities=15% Similarity=0.201 Sum_probs=195.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEcc-----CCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCc
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-----GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 458 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~-----~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~ 458 (1084)
+..|.+.|+.++|.|....|++++.||++.+|+++ ....+.++.++++|.++|.|++.+++++ .+++|+.||+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg~ 367 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDGT 367 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCce
Confidence 55689999999999999999999999999999993 3344677889999999999999999999 8999999999
Q ss_pred EEEEECCC------C----ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCC--CeEEE
Q 001403 459 IKVWDAVT------G----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTR 526 (1084)
Q Consensus 459 i~vwd~~~------g----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~i~~ 526 (1084)
|+.|++.. . .....+.||.+.|+.++++..+ ..|++++.||+++.|+...... ..+.... .--.+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 99996541 1 2346788999999999997765 4799999999999998776555 3332222 22334
Q ss_pred EEEcCCC-CEEEEEeeCCCCCeeEEEecCCCceEeeeeecccc----ccCceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 001403 527 MAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 601 (1084)
Q Consensus 527 ~~~s~d~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 601 (1084)
+.+.... ..+++... .+.-.+.+...+..+..+..... ....+..+.++|.+...+++.+|+.|+++|..+
T Consensus 445 vd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred EeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 4443322 11222111 22233344444444444432221 124577888999999999999999999999999
Q ss_pred CeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccc
Q 001403 602 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 654 (1084)
Q Consensus 602 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 654 (1084)
+.++.....+. ..+.++++.|+|.+|++++.|+.+++|.+....++.....
T Consensus 521 ~~~l~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 521 GKILHSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred cccchheeecc--ceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 99998887653 4689999999999999999999999999987766655443
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9e-18 Score=191.32 Aligned_cols=249 Identities=14% Similarity=0.148 Sum_probs=196.9
Q ss_pred CceEEEEcCCCce----eeeecccccCccccccceEEEEEcCC---ccccceeeeecCCCCCeEEEEEcCCCC-EEEEEe
Q 001403 336 SPMSMDFHPVQHT----LLLGLWDVNSGQKLFIRNFKVWDIGA---CSMLFKTALVRDPGVSVNRVVWSPDGS-LLGVAY 407 (1084)
Q Consensus 336 ~V~~v~~spdg~~----las~~~d~~sg~~~~~~~v~iwd~~~---~~~~~~~~~~~~h~~~V~~v~fspdg~-~las~~ 407 (1084)
.-..++|++.|.. ||.|..| |.|.+||... +...........|++.|..+.|++.+. +||+|+
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~ed---------G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa 136 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLED---------GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGA 136 (1049)
T ss_pred cceeeeecccCCCccceeeccccC---------CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccC
Confidence 5668999998877 7777766 9999999865 222222223667999999999999665 999999
Q ss_pred CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC--cEEEEee
Q 001403 408 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA--PVYSLCP 485 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~--~v~~~~~ 485 (1084)
.||.|.|||++.-+...... -....+.|.+++|+..-.+ +|++++.+|.+.|||++..+.+-.+..|.. .+..+.|
T Consensus 137 ~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~W 214 (1049)
T KOG0307|consen 137 DDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAW 214 (1049)
T ss_pred CCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCccceeeeee
Confidence 99999999998754322111 1124568999999987766 799999999999999999988887876655 4678899
Q ss_pred cccCCCcEEEEEecC-C--eEEEEECCCCC-ceEeecCCCCeEEEEEEcCCC-CEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 486 HAKENIHFIFSISVD-G--KIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~d-g--~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
+|+... .+++++.| + .|.+||++... ...+++.|...|.++.|++.+ ++|++++. |+.|.+|+.++++.+
T Consensus 215 hP~~aT-ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 215 HPDHAT-QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DNRIICWNPNTGEVL 289 (1049)
T ss_pred CCCCce-eeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CCCeeEecCCCceEe
Confidence 987654 45555544 3 49999998654 456678999999999999977 77778775 677999999999999
Q ss_pred eeeeccccccCceEEEEEcCCCC-EEEEEECCCcEEEEECCCCe
Q 001403 561 RTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 603 (1084)
Q Consensus 561 ~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~ 603 (1084)
..+.... +.+..+.|+|... .+++++-||.|-|+.+.+..
T Consensus 290 ~~~p~~~---nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 290 GELPAQG---NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eecCCCC---cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9988755 8899999999877 67778999999999987654
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-16 Score=156.84 Aligned_cols=294 Identities=11% Similarity=0.076 Sum_probs=211.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCc---cccceeee-ecccccEeEEEeecCCCcEEEEEEeCCCcE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS---DARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTI 459 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~---~~~~~~~l-~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i 459 (1084)
+.+|.+.|.++.||.++++||+|+.|..+.+|+++..- ..+++... ..|...|.|++|....+ .+++|+.+++|
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~V 129 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWGTV 129 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCccee
Confidence 66799999999999999999999999999999987321 11222122 24668999999998887 89999999999
Q ss_pred EEEECCCCceeeEecc--CCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc---eEeecCCCCeEEEEEEcCCCC
Q 001403 460 KVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGR 534 (1084)
Q Consensus 460 ~vwd~~~g~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~ 534 (1084)
...|+++.+.+..+.. ..+.|+.+..+|. .+.+++.+.+|.|.+||.+.... .............+.|.|...
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCC--CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 9999999999887753 3358999998776 36899999999999999986552 334444556788999999887
Q ss_pred EEEEEeeCCCCCeeEEEecCCCceE-eee---eeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEE-EEEc
Q 001403 535 RLFSCGTSKEGESFLVEWNESEGAI-KRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL-TTID 609 (1084)
Q Consensus 535 ~l~~~~~~~~~~~~i~~wd~~~~~~-~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~ 609 (1084)
.|+....... -+-+||.+.... +.. +.+.........++.|+|+|+.+++.-....-.+||+.+..+. ..+.
T Consensus 208 ~Li~~~~~~~---G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 208 ALILVNSETG---GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred eeEEeccccC---CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 7766554333 388999875432 111 1222211133467889999999998776666777888774433 2232
Q ss_pred CCC----CCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC-----------------------CeeeeccccccceeEE
Q 001403 610 AGG----GLPENPRICFNKNGTLLAVIANENRIKILETPES-----------------------NSVDAAGVLSDNLRKL 662 (1084)
Q Consensus 610 ~~~----~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-----------------------~~~~~~~~~~~~i~~~ 662 (1084)
... ....+.+++|-.|. .+++|+++=.|++|.+... +.+..+++|..-++.+
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 111 11235677777654 4999999999999988632 2344566777777777
Q ss_pred EEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccc
Q 001403 663 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 707 (1084)
Q Consensus 663 ~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~ 707 (1084)
.|+ +...++++.+-.+.+++|.-
T Consensus 364 RF~----------------------~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 364 RFS----------------------QHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eec----------------------CCcceEeccchhhheecccc
Confidence 776 45666777788888999974
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=166.08 Aligned_cols=249 Identities=17% Similarity=0.167 Sum_probs=164.4
Q ss_pred eeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe-ccCCCcEEEEeecccCCCcEEEEEecCCeEEEE
Q 001403 428 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506 (1084)
Q Consensus 428 ~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iw 506 (1084)
++.||++.|+|++|+.||. +|++|+.|-.+.|||.-..+.++.+ .+|...|.++.|.|..+...+++|+.|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 6889999999999999999 9999999999999999988888877 789999999999999888999999999999999
Q ss_pred ECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCC-CEE
Q 001403 507 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQI 585 (1084)
Q Consensus 507 d~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l 585 (1084)
|++..+... .+ -...+..+.+..|. ..|..++-.|++ ..+
T Consensus 123 dl~~~~~~~-------------------------~d-----------~~~~~~~~~~~cht---~rVKria~~p~~Phtf 163 (758)
T KOG1310|consen 123 DLDSSKEGG-------------------------MD-----------HGMEETTRCWSCHT---DRVKRIATAPNGPHTF 163 (758)
T ss_pred ecccccccc-------------------------cc-----------cCccchhhhhhhhh---hhhhheecCCCCCceE
Confidence 987532211 00 00111223334455 678888888888 778
Q ss_pred EEEECCCcEEEEECCCCeEEE--------EEcCCCCCCCcceEEEec-CCCEEEEEECCCeEEEEEcCCC-Ceeeecc--
Q 001403 586 LAAGDDHVIKIWDMNKVQLLT--------TIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPES-NSVDAAG-- 653 (1084)
Q Consensus 586 ~~~~~dg~i~iwd~~~~~~~~--------~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~-- 653 (1084)
.++++||+|+-+|++....-. ........-...++.++| +..+|++|+.|--.++||.... +....-.
T Consensus 164 wsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~ 243 (758)
T KOG1310|consen 164 WSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTM 243 (758)
T ss_pred EEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccc
Confidence 899999999999998622110 011112222456889999 5678999999999999994311 1111000
Q ss_pred --ccccceeEEE-EcCCCceeeeeccC------ceeEecCCCCCCCCccceecccCccccccceeecCccceeeccC
Q 001403 654 --VLSDNLRKLS-VNPISTVTGAGIAN------GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 721 (1084)
Q Consensus 654 --~~~~~i~~~~-~~p~~~~~~~~~~~------~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 721 (1084)
.......|+. |+|.......+... ..++| +|+|.-++..-....|.++++...+..........
T Consensus 244 ~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf----npNGtElLvs~~gEhVYlfdvn~~~~~~~y~~~~~ 316 (758)
T KOG1310|consen 244 NTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF----NPNGTELLVSWGGEHVYLFDVNEDKSPTPYFLPIE 316 (758)
T ss_pred cCCCCcccchhheecCccccCcccccccceeeeEEEEE----CCCCcEEEEeeCCeEEEEEeecCCCCceeecCccc
Confidence 0011111121 22222211111011 12333 57776666666666788888876665554444433
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.6e-17 Score=153.62 Aligned_cols=307 Identities=16% Similarity=0.196 Sum_probs=199.3
Q ss_pred eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEE
Q 001403 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 640 (1084)
Q Consensus 561 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 640 (1084)
..+++|. ..++++.|..++ +|++|..-|.|.+|++.+......+...+. ..|..+..-|+ ..+.+-+.|+.+.+
T Consensus 8 fvLRp~~---~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 8 FVLRPHS---SSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred eEecccc---chheehhhccch-hhhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecCC-cchhhcCCCceEEE
Confidence 4455666 789999998776 599999999999999999888887775443 24667777776 56888889999999
Q ss_pred EEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeecc
Q 001403 641 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 720 (1084)
Q Consensus 641 wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~ 720 (1084)
|++..+..+.. |+-.++++.|++..-.. ...+....++.- ..+.-.+-..+.+.+.+.....-
T Consensus 82 w~ia~s~~i~i---~Si~~nslgFCrfSl~~-------------~~k~~eqll~yp-~rgsde~h~~D~g~~tqv~i~dd 144 (323)
T KOG0322|consen 82 WTIAYSAFISI---HSIVVNSLGFCRFSLVK-------------KPKNSEQLLEYP-SRGSDETHKQDGGDTTQVQIADD 144 (323)
T ss_pred EEccCcceEEE---eeeeccccccccceecc-------------CCCcchhheecC-CcccchhhhhccCccceeEccCc
Confidence 99987644432 23334444454332111 000111111111 11111111111122222222222
Q ss_pred CCccccceEEEEEEec-CCC--eEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCc
Q 001403 721 PSKVKANKISRLTYNN-GGQ--AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 797 (1084)
Q Consensus 721 ~~~~~~~~i~~l~~s~-~g~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 797 (1084)
+.....+.+.+..+.. ++. .+++|..+|.+.+||+..+..... -...|.+. .+...|..+|
T Consensus 145 ~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~-------~~~~~kv~---------~~~ash~qpv 208 (323)
T KOG0322|consen 145 SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQ-------LPQSSKVE---------SPNASHKQPV 208 (323)
T ss_pred hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeec-------cccccccc---------cchhhccCcc
Confidence 2233455565555322 233 356677789999999876522110 11122221 1122488999
Q ss_pred cEEEecCCCCEEEEEe-CCeEEEEEcCC--cee--EEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee
Q 001403 798 PCFALSKNDAYLFSAS-GGVISLYIVMT--FKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 872 (1084)
Q Consensus 798 ~~l~~s~dg~~l~~~s-dg~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~ 872 (1084)
.++.+.+.-..=++++ +..+..|+++. +.+ ...+.-....+..+.+-| |++++|+++.||.||||+..+..++.
T Consensus 209 lsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLA 287 (323)
T KOG0322|consen 209 LSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLA 287 (323)
T ss_pred eeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchh
Confidence 9999986544444444 56788888763 322 222333445788899999 99999999999999999999999999
Q ss_pred eecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001403 873 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 907 (1084)
Q Consensus 873 ~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~ 907 (1084)
.++-|++.|++++|+||..++|.+|.|++|.+|++
T Consensus 288 VLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 288 VLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999999986
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-16 Score=157.09 Aligned_cols=298 Identities=12% Similarity=0.113 Sum_probs=212.6
Q ss_pred eeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccc---ceee-eecCCCCCeEEEEEcCCCC
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSML---FKTA-LVRDPGVSVNRVVWSPDGS 401 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~---~~~~-~~~~h~~~V~~v~fspdg~ 401 (1084)
+++-+.+|.+.|.++.||.+|++||+|..| ..++||.+...-.. .... .-..|...|.|++|....+
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD---------~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~ 118 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDD---------MHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR 118 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCc---------ceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe
Confidence 446688999999999999999999999877 89999999642111 1111 1234668999999999999
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc-e--eeEeccCCC
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-R--TYSFEGHGA 478 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~-~--~~~~~~h~~ 478 (1084)
++.+|..+++|...|+++.+.+... .-....+.|+.+..+|... .+++.+.++.|.+||.+... . +..+.....
T Consensus 119 ~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~ 195 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK 195 (609)
T ss_pred eEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence 9999999999999999998765422 1112334899999999977 79999999999999987654 2 222233445
Q ss_pred cEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE-------eecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEE
Q 001403 479 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-------DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 551 (1084)
Q Consensus 479 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-------~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~ 551 (1084)
...++-|+|.. ..+|++.+..+-+.+||.+...... .+......-.++.|+|.|+.+.+.-. ...-.+
T Consensus 196 ~F~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P~~ 270 (609)
T KOG4227|consen 196 NFYTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCPLY 270 (609)
T ss_pred cceeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCCEE
Confidence 56677787653 3688899999999999987654321 11222223467889999999887643 222456
Q ss_pred ecCCCceEe-eeeeccc----cccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC-----------------------e
Q 001403 552 WNESEGAIK-RTYQGLQ----LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-----------------------Q 603 (1084)
Q Consensus 552 wd~~~~~~~-~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-----------------------~ 603 (1084)
||+-+.++. ..+. |. .....+.+++|..|- .+++|+.+-.|++|.+... .
T Consensus 271 ~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~ 348 (609)
T KOG4227|consen 271 FDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK 348 (609)
T ss_pred eeeecccceeEecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence 777664432 2222 11 112357778887654 5999999999999987531 1
Q ss_pred EEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 604 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 604 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
.+..+.+| ...++.|.|+|...+|++.+-.+.++||.-.
T Consensus 349 ~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 349 ELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence 22344444 3457899999999999999999999999754
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-15 Score=143.15 Aligned_cols=274 Identities=16% Similarity=0.201 Sum_probs=192.3
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCc-------cccceeeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGAC-------SMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 408 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~-------~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~ 408 (1084)
.|.+-++||.++||++|..+ |.|.+..++.. ..........+|.++|..++|. .++|++|+.
T Consensus 12 tvf~qa~sp~~~~l~agn~~---------G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd 80 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLF---------GDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD 80 (325)
T ss_pred HHHHHhhCCcceEEEEecCC---------CeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC
Confidence 67777899999999999877 99999988531 1111112247899999999999 456766654
Q ss_pred CCEEEEEEccCCcc---ccceee--eeccc-----ccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001403 409 KHIVQLYAYHGGSD---ARQQLE--IDAHV-----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 478 (1084)
Q Consensus 409 dg~v~iwd~~~~~~---~~~~~~--l~~h~-----~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~ 478 (1084)
|.|+=|.+..... .+...+ ...|. -.|+++...|... -++.++.|+.+.-||+++|+..++++||++
T Consensus 81 -G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHtD 157 (325)
T KOG0649|consen 81 -GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHTD 157 (325)
T ss_pred -ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCcc
Confidence 9999998864322 111111 11222 2588899998877 455555799999999999999999999999
Q ss_pred cEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCC----------CeEEEEEEcCCCCEEEEEeeCCCCCee
Q 001403 479 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG----------LGCTRMAYSANGRRLFSCGTSKEGESF 548 (1084)
Q Consensus 479 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----------~~i~~~~~s~d~~~l~~~~~~~~~~~~ 548 (1084)
.|.++.-.. ....+++|+.||++|+||.++.+....+.... .+|.++ .-+..++++++ ...
T Consensus 158 YvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGg-----Gp~ 228 (325)
T KOG0649|consen 158 YVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGG-----GPK 228 (325)
T ss_pred eeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE--eccCceEEecC-----CCc
Confidence 999998632 33579999999999999999988876654322 234444 45677888876 344
Q ss_pred EEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecC-CC
Q 001403 549 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN-GT 627 (1084)
Q Consensus 549 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~ 627 (1084)
+.+|+++..+....+.-.. ++..+.|.. +.++++++.+.+.-|.+. |.+....+.... ...+..|+.. -+
T Consensus 229 lslwhLrsse~t~vfpipa----~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~k 299 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVFPIPA----RVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPIK 299 (325)
T ss_pred eeEEeccCCCceEEEeccc----ceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCceE
Confidence 9999999999888887644 778888854 578888888899999874 454444443322 2344444432 23
Q ss_pred EEEEEECCCeEEEE
Q 001403 628 LLAVIANENRIKIL 641 (1084)
Q Consensus 628 ~l~~~~~dg~i~iw 641 (1084)
++-.++..+.+.|+
T Consensus 300 ~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 300 FISIAGFSNKLHIL 313 (325)
T ss_pred EEEecccceeeeee
Confidence 44455555566554
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-14 Score=160.49 Aligned_cols=202 Identities=12% Similarity=0.130 Sum_probs=128.6
Q ss_pred cEEEecCCCCEEEEEe--CCeEEEEEcCC-c---eeEEEEcCCCCCeEEEEEcCCCCcEEE-EEeCCCeEEEEEcCCcee
Q 001403 798 PCFALSKNDAYLFSAS--GGVISLYIVMT-F---KTILTIMPPSPTATSLAFNPHDNNVIA-IGMDDSTILIYNARSSEV 870 (1084)
Q Consensus 798 ~~l~~s~dg~~l~~~s--dg~i~vwd~~~-~---~~~~~~~~~~~~i~~l~~s~~d~~~la-~g~~dg~i~iwd~~~~~~ 870 (1084)
..++++|+|+++++++ ++.|.+|++++ + +.+..+. +......++++| ++++++ +...++.|.+||+.+...
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCc
Confidence 3566667776666665 46677777653 2 1222222 223456788999 777665 455679999999986332
Q ss_pred ee-------eecccccCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC--CceeeeeeeecCCCCccCCCCceEEEEccCC
Q 001403 871 IS-------KLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 940 (1084)
Q Consensus 871 ~~-------~l~~h~~~V~~l~~spd~~~l~s~s~-dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 940 (1084)
+. .... ......++|+|||++++++.. +++|.+|+++. ++......+...............+.|+|||
T Consensus 161 l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 21 1111 234678999999999988776 89999999984 3322222222211111111134468999999
Q ss_pred CEEEEE--eCCeEEEEEcCCcce----eeEeecCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcC--CCce
Q 001403 941 TRFLLV--HETHLAIYEAEELTC----LKQWFPISSVPISQATFSCDCRMVFTSFV-DGTLSIHEAS--NLEV 1004 (1084)
Q Consensus 941 ~~la~~--~d~~i~vwd~~~~~~----~~~~~~~h~~~v~~l~fs~dg~~l~t~~~-dg~i~vwd~~--~~~~ 1004 (1084)
++++++ .++.|.+|++..... +..... ......+.|+|||++|+++.. +++|.+|+++ +|.+
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 999996 467899999864332 222111 124457899999999998876 8999999875 4444
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.3e-15 Score=161.87 Aligned_cols=250 Identities=10% Similarity=0.086 Sum_probs=164.5
Q ss_pred CCCccEEEecCCCCEEEEEe--CCeEEEEEcC-Ccee--EEEEcCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEEcCC
Q 001403 794 QEAVPCFALSKNDAYLFSAS--GGVISLYIVM-TFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS 867 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~-~~~~--~~~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~i~iwd~~~ 867 (1084)
......++++|++++|++++ ++.|.+|++. +++. ..... ..+....++|+| ++++|++++ .++.|.+|++.+
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECC
Confidence 34567889999999998775 5889999996 3432 22222 234567899999 788777766 488999999974
Q ss_pred -ce---eeeeecccccCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeee---eeeecCCCCccCCCCceEEEEccC
Q 001403 868 -SE---VISKLEGHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGWGIQTC---RSLQTPDGVMTLAPSETHIQFHKD 939 (1084)
Q Consensus 868 -~~---~~~~l~~h~~~V~~l~~spd~~~l~s~-s~dg~I~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~d 939 (1084)
+. .+..+.+ .....+++++||+++++++ ..++.|.+||+.+...... .......+ .....++|+||
T Consensus 112 ~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p~~~~~~pd 185 (330)
T PRK11028 112 DGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGPRHMVFHPN 185 (330)
T ss_pred CCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----CCCceEEECCC
Confidence 32 2333332 2346778999999988655 4569999999986321110 11111112 24678999999
Q ss_pred CCEEEEE--eCCeEEEEEcCC--cc--eeeEeec--C---CCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcCCCceeEE
Q 001403 940 QTRFLLV--HETHLAIYEAEE--LT--CLKQWFP--I---SSVPISQATFSCDCRMVFTSFV-DGTLSIHEASNLEVQCR 1007 (1084)
Q Consensus 940 g~~la~~--~d~~i~vwd~~~--~~--~~~~~~~--~---h~~~v~~l~fs~dg~~l~t~~~-dg~i~vwd~~~~~~~~~ 1007 (1084)
|++++++ .+++|.+|++.. ++ .+..+.. . +......+.|+|||++|+++.. ++.|.+|++.+......
T Consensus 186 g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~ 265 (330)
T PRK11028 186 QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS 265 (330)
T ss_pred CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE
Confidence 9999885 378999999973 32 2222211 1 1223346899999999998854 68999999965432111
Q ss_pred eccccccCCCCcccceeeeEEEECCCCCCEEEEEeC-CCcEEEEcCCCCCCCc
Q 001403 1008 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT-NGEVYVIEPNEPGDTW 1059 (1084)
Q Consensus 1008 ~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~-dg~v~vw~~~~~~~~~ 1059 (1084)
+... .+.+ ..+..++++| ||.+|+++.. +++|.+|++..+...+
T Consensus 266 ~~~~--~~~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 266 FEGH--QPTE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred EeEE--Eecc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 1111 1111 2344578999 5888887765 8999999987655444
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=157.53 Aligned_cols=292 Identities=12% Similarity=0.157 Sum_probs=203.1
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee--cCCC-CeEE
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPG-LGCT 525 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~-~~i~ 525 (1084)
.++++...|+|++||..+|+.+..++++...++.+.|......+.+.+++.||+|++||++.......+ ..+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 677788899999999999999999999999999999976545678999999999999999987664433 3333 4677
Q ss_pred EEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE-eeee-eccccccCceEEEEEcCCC-CEEEEEECCCcEEEEECCCC
Q 001403 526 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTY-QGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV 602 (1084)
Q Consensus 526 ~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~-~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~ 602 (1084)
+++....++.++++..-...+..|.+||.+..+. ++.+ ..|. +.|+++.|+|.. +.|++|+.||.|.+||+...
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~---DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN---DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc---CcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 7777778888888876666678899999998765 5444 3454 899999999975 67888999999999999754
Q ss_pred eE----EEEEcCCCCCCCcceEEEecCC-CEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccC
Q 001403 603 QL----LTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 677 (1084)
Q Consensus 603 ~~----~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~ 677 (1084)
.. +.++. ....|..+.|..++ +.+.+.+..++..+|+++.+.+...+....-.. ... .....
T Consensus 199 ~EeDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~--~d~--------r~~~~ 265 (376)
T KOG1188|consen 199 NEEDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSA--DDL--------RKEDN 265 (376)
T ss_pred cchhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchh--hhH--------Hhhhh
Confidence 22 23332 22348889999876 458888889999999999886443332211000 000 00000
Q ss_pred ceeEecCCCCCCCCccceecc-cCccccccceeecCc-cceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeec
Q 001403 678 GSVSVNEDPKEDVKPEISVEA-ENKSEVEKPLFARPS-ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 755 (1084)
Q Consensus 678 ~~~~~~~~~s~~~~~l~~~~~-d~~i~~w~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~ 755 (1084)
....++.....++...+.++. -+...++.+....+. ..........+|..-|+++.|...+..+.+|+.||.+.+|..
T Consensus 266 ~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 266 CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 011122221233344444433 566666655432222 122233334457777888999999999999999999999985
Q ss_pred c
Q 001403 756 P 756 (1084)
Q Consensus 756 ~ 756 (1084)
+
T Consensus 346 ~ 346 (376)
T KOG1188|consen 346 E 346 (376)
T ss_pred C
Confidence 3
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-17 Score=181.69 Aligned_cols=288 Identities=15% Similarity=0.236 Sum_probs=226.4
Q ss_pred eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCe
Q 001403 558 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 637 (1084)
Q Consensus 558 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 637 (1084)
+.+..+.+|. ..|.|+.|...|.++++|++|..++||.+.++.++....+|.+ .+..++.+.+..++++++.|..
T Consensus 181 k~ikrLlgH~---naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 181 KNIKRLLGHR---NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred HHHHHHHhhh---hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccchhhhhhhhcccCce
Confidence 3445666777 8999999999999999999999999999999999999997765 6899999999999999999999
Q ss_pred EEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCcccee
Q 001403 638 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 717 (1084)
Q Consensus 638 i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 717 (1084)
|++|.+..+.++..+++|.+.|++++|+|. .+.+.||++++||...... ...
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~--------------------------~sss~dgt~~~wd~r~~~~--~y~ 307 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPR--------------------------ASSSDDGTCRIWDARLEPR--IYV 307 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCcc--------------------------ccCCCCCceEecccccccc--ccC
Confidence 999999999999999999999999999974 2567789999999762110 000
Q ss_pred eccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCc
Q 001403 718 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 797 (1084)
Q Consensus 718 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 797 (1084)
-.-+.......+..+.|...+..+++++.++....|.+..- .| +...+
T Consensus 308 prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l---------------~~-----------------~~~~l 355 (1113)
T KOG0644|consen 308 PRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL---------------AW-----------------RSNLL 355 (1113)
T ss_pred CCCCCcccccceeeeeccccccccccccCCcccccchhhHh---------------hh-----------------hccce
Confidence 00111123456778888899999999999988887765421 11 11112
Q ss_pred cEEEecCCC-CEEEEE-eCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee-
Q 001403 798 PCFALSKND-AYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL- 874 (1084)
Q Consensus 798 ~~l~~s~dg-~~l~~~-sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l- 874 (1084)
.-+..+.|- .+.+++ .+-.+.+|++.+|.....+.+|...+..+.++|.+.+...+++.||...|||+-.|.+++..
T Consensus 356 if~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 356 IFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred EEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee
Confidence 222222222 233333 36779999999999999999999999999999988888889999999999999998776554
Q ss_pred cccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001403 875 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 911 (1084)
Q Consensus 875 ~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~ 911 (1084)
.+| +.+..-+||+||..++....-|.+.|.....++
T Consensus 436 ~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 436 IGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ccc-ceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 455 456677999999999998888999998876654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.3e-15 Score=147.50 Aligned_cols=241 Identities=11% Similarity=0.172 Sum_probs=183.9
Q ss_pred CCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCceee
Q 001403 794 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI 871 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg--~i~iwd~~~~~~~ 871 (1084)
...+..+.|..+...|..|+....++|..+..............|..+-|+. .++|..+.+. .+++++++.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4456677788899999999877788888876555333333445677888876 3666666543 6999999988877
Q ss_pred eeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-E--eC
Q 001403 872 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V--HE 948 (1084)
Q Consensus 872 ~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~--~d 948 (1084)
..+. ...+|.++.+. .++|+.+=.+. |+|||+..- +.+.+.+.......++.++++++.+.++|. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~M-----klLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDM-----KLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccc-----eeehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7766 45679999996 45566554444 999999984 344444433222235677777777889998 3 56
Q ss_pred CeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCc-EEEEEcCCCceeEEeccccccCCCCcccceeeeE
Q 001403 949 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1027 (1084)
Q Consensus 949 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1027 (1084)
|.|.|||+.+.+.+..+ ..|.+++.+++|++||.+|||+++.|+ |||+.+.+|+.+..|.+..+ .+...+
T Consensus 153 GdV~l~d~~nl~~v~~I-~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------~~~IyS 223 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTI-NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------PVSIYS 223 (391)
T ss_pred ceEEEEEcccceeeeEE-EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--------eeEEEE
Confidence 88999999998888874 489999999999999999999999997 89999999999988885443 233457
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 1028 IAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1028 ~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
++|+| |+.+|++.+..++|+||.+....
T Consensus 224 L~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 224 LSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 89999 58999999999999999996654
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-15 Score=145.32 Aligned_cols=228 Identities=14% Similarity=0.175 Sum_probs=174.9
Q ss_pred CCeEEEEEcCCcee---EEEEcCCCCCeEEEEEcCCCCcEEEEEeCC-------CeEEEEEcCCc---------eeeeee
Q 001403 814 GGVISLYIVMTFKT---ILTIMPPSPTATSLAFNPHDNNVIAIGMDD-------STILIYNARSS---------EVISKL 874 (1084)
Q Consensus 814 dg~i~vwd~~~~~~---~~~~~~~~~~i~~l~~s~~d~~~la~g~~d-------g~i~iwd~~~~---------~~~~~l 874 (1084)
++.|.+.++..... ...|..+.+.|..++-+|.+.++|+++..+ ..+-||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 57888888765432 234666779999999999888899988653 25789988642 344555
Q ss_pred c-ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeee-ecCCCCccCCCCceEEEEcc--CCCEEEEEeCCe
Q 001403 875 E-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL-QTPDGVMTLAPSETHIQFHK--DQTRFLLVHETH 950 (1084)
Q Consensus 875 ~-~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~--dg~~la~~~d~~ 950 (1084)
. .+-+.|.|+.|.|++..+++-. |..|.+|+++.+......+. ....++. ...++-+||| ||..+++..|++
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~---~~ftsg~WspHHdgnqv~tt~d~t 194 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMR---HSFTSGAWSPHHDGNQVATTSDST 194 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccccc---ceecccccCCCCccceEEEeCCCc
Confidence 5 4667899999999999999876 78899999998664321111 1112222 2578889998 899999999999
Q ss_pred EEEEEcCCcceeeEeecCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEE
Q 001403 951 LAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1029 (1084)
Q Consensus 951 i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1029 (1084)
+..||+++..+...+...|...|..+.|.|+.+ +|+||+.||.|++||.+.-+....-. + .|.. +.-++.
T Consensus 195 l~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el-----~--~HsH--WvW~VR 265 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL-----P--GHSH--WVWAVR 265 (370)
T ss_pred EEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc-----C--CCce--EEEEEE
Confidence 999999999998888889999999999999875 58899999999999998765432111 1 1333 444788
Q ss_pred ECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 1030 AHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 1030 ~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
|.|...+++++|++|..|.+|....
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred ecCccceEEEecCCCceeEEEeccc
Confidence 9998789999999999999998654
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-15 Score=149.54 Aligned_cols=277 Identities=14% Similarity=0.181 Sum_probs=191.3
Q ss_pred ceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC--CCCEEEEEeCCCEEEEEEccCCcccc
Q 001403 347 HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYHGGSDAR 424 (1084)
Q Consensus 347 ~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~las~~~dg~v~iwd~~~~~~~~ 424 (1084)
..+|++..+ ++|++||..++..... +.+|...+..++|.. ....+.+|+.||+|++||+.+.....
T Consensus 41 ~~vav~lSn---------gsv~lyd~~tg~~l~~---fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a 108 (376)
T KOG1188|consen 41 TAVAVSLSN---------GSVRLYDKGTGQLLEE---FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA 108 (376)
T ss_pred eeEEEEecC---------CeEEEEeccchhhhhe---ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh
Confidence 557777666 9999999999655443 678888888999987 56789999999999999999876544
Q ss_pred ceeeeeccc-ccEeEEEeecCCCcEEEEEEeC----CCcEEEEECCCCce-eeEe-ccCCCcEEEEeecccCCCcEEEEE
Q 001403 425 QQLEIDAHV-GNVNDLAFSAPCKQISVITCGD----DKTIKVWDAVTGSR-TYSF-EGHGAPVYSLCPHAKENIHFIFSI 497 (1084)
Q Consensus 425 ~~~~l~~h~-~~V~~l~~s~d~~~l~l~s~~~----d~~i~vwd~~~g~~-~~~~-~~h~~~v~~~~~~~~~~~~~l~s~ 497 (1084)
.+ ...+|. .+..+++..-.++ ++++|.. +-.|.+||++..+. +..+ ..|.+.|+++.|+|+ +.++|++|
T Consensus 109 ~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-~pnlLlSG 184 (376)
T KOG1188|consen 109 RI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-DPNLLLSG 184 (376)
T ss_pred he-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-CCCeEEee
Confidence 33 355665 4666777665666 6666643 56799999998766 5544 679999999999987 45799999
Q ss_pred ecCCeEEEEECCCCCc---eEeecCCCCeEEEEEEcCCC-CEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccc----
Q 001403 498 SVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ---- 569 (1084)
Q Consensus 498 s~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~---- 569 (1084)
|.||.|.++|+..... +...-.+...|.++.|..++ +.+.+.+. .....+|+++.+.....+......
T Consensus 185 SvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~~~~~d~ 260 (376)
T KOG1188|consen 185 SVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPDVSADDL 260 (376)
T ss_pred cccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCccchhhhH
Confidence 9999999999976533 22333455679999999888 33555444 445899999988765554433100
Q ss_pred -----cCceEEEEEcCCCCEEEEEEC-CCcEEEEECC---CCeE---EEEEcCCCCCCCcceEEEecCCCEEEEEECCCe
Q 001403 570 -----HNSVSVVHFDTAKDQILAAGD-DHVIKIWDMN---KVQL---LTTIDAGGGLPENPRICFNKNGTLLAVIANENR 637 (1084)
Q Consensus 570 -----~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~---~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 637 (1084)
-..+...-...+...++.++. -+...++-+. ++.. +..+.+ ++...|.++.|...+..+.+|+.||.
T Consensus 261 r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~TGGEDG~ 339 (376)
T KOG1188|consen 261 RKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYTGGEDGL 339 (376)
T ss_pred HhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeeccCCCce
Confidence 011111111223344444443 5555555433 3332 333333 23345788889988999999999999
Q ss_pred EEEEEcC
Q 001403 638 IKILETP 644 (1084)
Q Consensus 638 i~iwd~~ 644 (1084)
+.+|..+
T Consensus 340 l~~Wk~~ 346 (376)
T KOG1188|consen 340 LQAWKVE 346 (376)
T ss_pred EEEEecC
Confidence 9999864
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.6e-16 Score=147.95 Aligned_cols=286 Identities=16% Similarity=0.132 Sum_probs=195.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeee-cccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
+++|.+.|+++.|-.+++ |.+|...|.|++|++.+..... .++ .|...|+.+.-.|++. +.+-+.|+.+.+|
T Consensus 10 LRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~---~~r~~g~~~it~lq~~p~d~---l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP---LIRLFGRLFITNLQSIPNDS---LDTQGRDPLLILW 82 (323)
T ss_pred eccccchheehhhccchh-hhcccccceEEEEEeecCccch---hhhhhccceeeceeecCCcc---hhhcCCCceEEEE
Confidence 668999999999998876 8899999999999999976544 455 5677899999999865 8999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccC---CC----cEEEEEecCCe-EEEEECCCCCceEeec----CCCCeEEEEEEc
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKE---NI----HFIFSISVDGK-IKAWLYDSLGARVDYD----APGLGCTRMAYS 530 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~---~~----~~l~s~s~dg~-i~iwd~~~~~~~~~~~----~~~~~i~~~~~s 530 (1084)
++.-+..+. .|.-.++++.|.+.. ++ +.++.-+.... +++-|........... ...+.+.+..+.
T Consensus 83 ~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 83 TIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred EccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 988765432 233444555443221 00 11111111000 1111111111111111 122345555432
Q ss_pred -CCCCE-EEEEeeCCCCCeeEEEecCCCceEe----------eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEE
Q 001403 531 -ANGRR-LFSCGTSKEGESFLVEWNESEGAIK----------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 598 (1084)
Q Consensus 531 -~d~~~-l~~~~~~~~~~~~i~~wd~~~~~~~----------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 598 (1084)
.++.+ ++.++. .++.+.+||+.++..+ .....|. .+|.++.+.+.-..=++|+.+..+..|+
T Consensus 160 ~~c~s~~lllaGy---Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~---qpvlsldyas~~~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 160 HACGSTFLLLAGY---ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK---QPVLSLDYASSCDRGISGGADDKLVMYS 233 (323)
T ss_pred ccccceEEEEEec---cCCeEEEEEccCCceeeccccccccccchhhcc---CcceeeeechhhcCCcCCCccccceeee
Confidence 23444 333332 3677999999998433 3333444 8999999998777778888888999998
Q ss_pred CCC--CeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeecc
Q 001403 599 MNK--VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 676 (1084)
Q Consensus 599 ~~~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~ 676 (1084)
+.. +.+.......-..+.|..+..-||++.+|+++.|+.||||+..+.+++..++.|...+++++|+
T Consensus 234 l~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfs----------- 302 (323)
T KOG0322|consen 234 LNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFS----------- 302 (323)
T ss_pred eccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeC-----------
Confidence 764 3322211111223458899999999999999999999999999999999999999999999998
Q ss_pred CceeEecCCCCCCCCccceecccCccccccc
Q 001403 677 NGSVSVNEDPKEDVKPEISVEAENKSEVEKP 707 (1084)
Q Consensus 677 ~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~ 707 (1084)
|+...++.++.|+.|.+|++
T Consensus 303 -----------pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 -----------PDCELMAAASKDARISLWKL 322 (323)
T ss_pred -----------CCCchhhhccCCceEEeeec
Confidence 45667888899999999975
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-16 Score=164.43 Aligned_cols=263 Identities=14% Similarity=0.178 Sum_probs=191.6
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCC-----ccccceeeeecCCCCCeEEEEEcCCCCE
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGA-----CSMLFKTALVRDPGVSVNRVVWSPDGSL 402 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~-----~~~~~~~~~~~~h~~~V~~v~fspdg~~ 402 (1084)
.+|..|.+.|.+++|.|-..-|++++-| +++++|.++. .......-.+.+|.++|.|++.++++..
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed---------~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~ 358 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASED---------GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEH 358 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccc---------cchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceE
Confidence 4788999999999999999999999888 9999999932 1222233358899999999999999999
Q ss_pred EEEEeCCCEEEEEEccCCc-------cccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEecc
Q 001403 403 LGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 475 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~-------~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~ 475 (1084)
+.+|+.||+|+.|++.... .......+.||.+.|+.+++|+... .|++++.||+++.|+...... .++..
T Consensus 359 ~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f~~ 435 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTFGE 435 (577)
T ss_pred EEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cccCC
Confidence 9999999999999654211 1112235779999999999999888 699999999999999776655 33322
Q ss_pred C--CCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCC-------CCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001403 476 H--GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTSKEGE 546 (1084)
Q Consensus 476 h--~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~s~d~~~l~~~~~~~~~~ 546 (1084)
. .+.-.++.+..+. -...++...-+.--+.+++.......+... ...+..+...|.+.+.+++.. +
T Consensus 436 ~~e~g~Plsvd~~ss~-~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he----d 510 (577)
T KOG0642|consen 436 PKEHGYPLSVDRTSSR-PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE----D 510 (577)
T ss_pred ccccCCcceEeeccch-hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc----C
Confidence 1 1222334432111 012222222222233333333333332211 124667778888888888765 6
Q ss_pred eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcC
Q 001403 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 610 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 610 (1084)
..|+++|..++.++.....|. ..++++++.|+|.+|++++.|+.+++|.+....++.....
T Consensus 511 ~~Ir~~dn~~~~~l~s~~a~~---~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 511 RSIRFFDNKTGKILHSMVAHK---DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred Cceecccccccccchheeecc---ceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 679999999999999988888 8999999999999999999999999999987666655443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-14 Score=163.83 Aligned_cols=303 Identities=17% Similarity=0.191 Sum_probs=209.2
Q ss_pred CceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCC-CCCcceEEEec--CCCEEEEEECCCeEEEEEcCCCC
Q 001403 571 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-LPENPRICFNK--NGTLLAVIANENRIKILETPESN 647 (1084)
Q Consensus 571 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~~ 647 (1084)
.+...+.|+|-...++++.+.-.|+|||.+.++.+..+..+.. ...|..+.+-. |..++++++.||.|+||+--...
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 3566788999999999999889999999999999888865432 23466777654 56678888889999998643210
Q ss_pred eeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccc
Q 001403 648 SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 727 (1084)
Q Consensus 648 ~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 727 (1084)
. +...++++
T Consensus 1145 ~----------------------------------------~~~eLVTa------------------------------- 1153 (1387)
T KOG1517|consen 1145 W----------------------------------------KKPELVTA------------------------------- 1153 (1387)
T ss_pred c----------------------------------------CCceeEEe-------------------------------
Confidence 0 00001111
Q ss_pred eEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCC-C
Q 001403 728 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-D 806 (1084)
Q Consensus 728 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g 806 (1084)
|++=...+.+....| .-+.|-.. |
T Consensus 1154 ------w~~Ls~~~~~~r~~~-------------------------------------------------~v~dWqQ~~G 1178 (1387)
T KOG1517|consen 1154 ------WSSLSDQLPGARGTG-------------------------------------------------LVVDWQQQSG 1178 (1387)
T ss_pred ------eccccccCccCCCCC-------------------------------------------------eeeehhhhCC
Confidence 000000011111111 11223333 4
Q ss_pred CEEEEEeCCeEEEEEcCCceeEEEEcC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc---eeeeeecccccC--
Q 001403 807 AYLFSASGGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSKR-- 880 (1084)
Q Consensus 807 ~~l~~~sdg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~---~~~~~l~~h~~~-- 880 (1084)
.++++|.-..|+|||...-.....+.. ....++++.-+...|..+++|..||.|++||.... ..+...+.|+..
T Consensus 1179 ~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence 444444458899999988777776653 34567887766656899999999999999998764 356777889887
Q ss_pred EEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCc
Q 001403 881 VTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 959 (1084)
Q Consensus 881 V~~l~~spd~~~-l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~ 959 (1084)
|..+.+-+.|-. |++|+.||.|++||+..........+ ..+....+..+++..+++...+|+|+.+.|+||++. |
T Consensus 1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i---v~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~-G 1334 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI---VAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS-G 1334 (1387)
T ss_pred ceeEEeecCCCcceeeeccCCeEEEEecccCccccccee---eeccccCccceeeeeccCCCeeeecCcceEEEEecC-h
Confidence 999999987755 99999999999999997432221111 112111124899999999999999877999999987 4
Q ss_pred ceeeEee------cCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 001403 960 TCLKQWF------PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1003 (1084)
Q Consensus 960 ~~~~~~~------~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~ 1003 (1084)
+.+..+. ....+.+.+++|.|---+||+|+.|.+|.||......
T Consensus 1335 ~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 4433321 1125678999999999999999999999999887654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.8e-15 Score=166.42 Aligned_cols=305 Identities=18% Similarity=0.266 Sum_probs=207.9
Q ss_pred cEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccC---CCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC
Q 001403 435 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH---GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 511 (1084)
Q Consensus 435 ~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 511 (1084)
+-..+.|+|-.. .++++...-.|+|||.+.++.+..|..+ ...|+.+.+-...|..++++++.||.|+||+--..
T Consensus 1066 ~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 455677888887 5787877778999999999998877654 45688888877778889999999999999953211
Q ss_pred CceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC
Q 001403 512 GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 591 (1084)
Q Consensus 512 ~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 591 (1084)
.. +...|+++. ..-++. ..+.. +.-.-+.|.....+|+++|+-
T Consensus 1144 ~~------------------~~~eLVTaw------------~~Ls~~----~~~~r---~~~~v~dWqQ~~G~Ll~tGd~ 1186 (1387)
T KOG1517|consen 1144 KW------------------KKPELVTAW------------SSLSDQ----LPGAR---GTGLVVDWQQQSGHLLVTGDV 1186 (1387)
T ss_pred cc------------------CCceeEEee------------cccccc----CccCC---CCCeeeehhhhCCeEEecCCe
Confidence 10 122333332 111111 11111 111445677777788888888
Q ss_pred CcEEEEECCCCeEEEEEcCCCCCCCcceEEEe-cCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCce
Q 001403 592 HVIKIWDMNKVQLLTTIDAGGGLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 670 (1084)
Q Consensus 592 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 670 (1084)
..|+|||.......+.+...... .++++.-+ ..|+.+++|..||.|++||......-
T Consensus 1187 r~IRIWDa~~E~~~~diP~~s~t-~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d--------------------- 1244 (1387)
T KOG1517|consen 1187 RSIRIWDAHKEQVVADIPYGSST-LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD--------------------- 1244 (1387)
T ss_pred eEEEEEecccceeEeecccCCCc-cceeecccccCCceEEEeecCCceEEeecccCCcc---------------------
Confidence 99999999998888888765442 34554433 25799999999999999998754110
Q ss_pred eeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccce--EEEEEEecCCCe-EEEeecC
Q 001403 671 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK--ISRLTYNNGGQA-IFALASN 747 (1084)
Q Consensus 671 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~--i~~l~~s~~g~~-l~~~~~d 747 (1084)
.-+.+|.- |... |..+.+-+.|-. |++++.+
T Consensus 1245 -----------------------------s~v~~~R~-----------------h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1245 -----------------------------SLVCVYRE-----------------HNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred -----------------------------ccceeecc-----------------cCCcccceeEEeecCCCcceeeeccC
Confidence 11122221 2233 777777776654 8999999
Q ss_pred CceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCcee
Q 001403 748 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT 827 (1084)
Q Consensus 748 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~ 827 (1084)
|.|++||+...... ...+.... ....+..+++.++++...+|+|+.+.|+||++. |+.
T Consensus 1279 G~I~~~DlR~~~~e-----------~~~~iv~~----------~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~ 1336 (1387)
T KOG1517|consen 1279 GDIQLLDLRMSSKE-----------TFLTIVAH----------WEYGSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQ 1336 (1387)
T ss_pred CeEEEEecccCccc-----------ccceeeec----------cccCccceeeeeccCCCeeeecCcceEEEEecC-hhh
Confidence 99999998653110 00000000 002335899999999999999999999999986 344
Q ss_pred EEEEcC-------CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce
Q 001403 828 ILTIMP-------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 869 (1084)
Q Consensus 828 ~~~~~~-------~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~ 869 (1084)
+..++. ..+.+.|++|+| -.-++|+|+.|.+|.||....+.
T Consensus 1337 l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1337 LNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 333332 235679999999 88899999999999999877543
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.9e-15 Score=141.17 Aligned_cols=286 Identities=17% Similarity=0.264 Sum_probs=199.8
Q ss_pred CceEEEEc--C-CCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCC-----EEEEEe
Q 001403 336 SPMSMDFH--P-VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-----LLGVAY 407 (1084)
Q Consensus 336 ~V~~v~~s--p-dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~-----~las~~ 407 (1084)
.+.++.|| | .+-+||.|+..-... +.|.|-.+......+....--.|.-+++.+.|.||.+ +||+.+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~-----Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~ 120 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYN-----NKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS 120 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccC-----CeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc
Confidence 66777787 3 346788876653332 5555555543222221111235889999999999874 566543
Q ss_pred CCCEEEEEEccCCcc-cccee-----eeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce---eeEeccCCC
Q 001403 408 SKHIVQLYAYHGGSD-ARQQL-----EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGA 478 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~-~~~~~-----~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~---~~~~~~h~~ 478 (1084)
| .+++|.+...+. +.... .-..+.+++++..|+.-... ++.+++-|-+..|||+++|.. ...+-.|..
T Consensus 121 -D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDK 197 (364)
T KOG0290|consen 121 -D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDK 197 (364)
T ss_pred -C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeEEEEEEeeccccceeeEEEecCc
Confidence 3 499999884221 11111 12246679999999876655 789999999999999998733 566788999
Q ss_pred cEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc-eEeecCC--CCeEEEEEEcCC-CCEEEEEeeCCCCCeeEEEecC
Q 001403 479 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAP--GLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNE 554 (1084)
Q Consensus 479 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~--~~~i~~~~~s~d-~~~l~~~~~~~~~~~~i~~wd~ 554 (1084)
.|..++|.. +.-+.+++.+.||.||++|++..+. ...++.+ ..+...++|++. -+++|+...+ ...|.+.|+
T Consensus 198 EV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~d---S~~V~iLDi 273 (364)
T KOG0290|consen 198 EVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD---SNKVVILDI 273 (364)
T ss_pred ceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcC---CceEEEEEe
Confidence 999999975 3447899999999999999987654 3333333 347788888874 4567766543 445899998
Q ss_pred CC-ceEeeeeeccccccCceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeE------EEEEcCCCCCCCcceEEEec-C
Q 001403 555 SE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQL------LTTIDAGGGLPENPRICFNK-N 625 (1084)
Q Consensus 555 ~~-~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~v~~s~-~ 625 (1084)
+. ...+..+++|. ..|+.++|.|.. .+|+++++|..+.+||+...-. +.... ....|+.+.|++ .
T Consensus 274 R~P~tpva~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~---a~~EVNqi~Ws~~~ 347 (364)
T KOG0290|consen 274 RVPCTPVARLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT---AGGEVNQIQWSSSQ 347 (364)
T ss_pred cCCCcceehhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh---ccceeeeeeecccC
Confidence 86 56678889988 999999999974 6788899999999999975322 11122 223589999996 5
Q ss_pred CCEEEEEECCCeEEE
Q 001403 626 GTLLAVIANENRIKI 640 (1084)
Q Consensus 626 ~~~l~~~~~dg~i~i 640 (1084)
+..++++.. +.+.+
T Consensus 348 ~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 348 PDWIAICFG-KKLEI 361 (364)
T ss_pred CCEEEEEec-CeeeE
Confidence 667777665 34444
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-14 Score=160.79 Aligned_cols=269 Identities=17% Similarity=0.161 Sum_probs=193.8
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEccCCcc--ccce-eeeecccccEeEEE
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSD--ARQQ-LEIDAHVGNVNDLA 440 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~las~~~dg~v~iwd~~~~~~--~~~~-~~l~~h~~~V~~l~ 440 (1084)
+.+.||++........ .-.....|+|+.|+| +..++|.|..+|.|.+||+..+.. .... .....|..+++.+.
T Consensus 222 ~~~~vW~~~~p~~Pe~---~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPEL---VLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred ceEEEEecCCCCCceE---EEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 4799999987622211 112567999999999 677888889999999999997765 1111 12347889999999
Q ss_pred eecCCCcEEEEEEeCCCcEEEEECCCCce------eeEec------cCCCcEEEEeecccCCCcEEEEEecCCeEEEEEC
Q 001403 441 FSAPCKQISVITCGDDKTIKVWDAVTGSR------TYSFE------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY 508 (1084)
Q Consensus 441 ~s~d~~~l~l~s~~~d~~i~vwd~~~g~~------~~~~~------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 508 (1084)
|..+-...-+++++.||.|+.|+++.-.. ..... .-...++++.|.+. +...++.|+.+|.|.--+-
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~~r 377 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKGCR 377 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccC-CCceEEEEcCCcEEEEEec
Confidence 97654422489999999999998764322 11111 12345778888765 4467899999999877332
Q ss_pred CCCCc--------eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCC-CceEeeeeeccccccCceEEEEEc
Q 001403 509 DSLGA--------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFD 579 (1084)
Q Consensus 509 ~~~~~--------~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~~~v~~~~~s 579 (1084)
..... ...+..|.++|.++.++|-+..++..+. +.++++|... ...++..+..+. ..+.+++||
T Consensus 378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~---~~v~~vaWS 450 (555)
T KOG1587|consen 378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSP---DYVTDVAWS 450 (555)
T ss_pred cCCcccccccccccccccccCcceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhcc---ceeeeeEEc
Confidence 22211 2245667789999999998877666553 7789999987 666666666666 679999999
Q ss_pred CCCC-EEEEEECCCcEEEEECCCCe--EEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 580 TAKD-QILAAGDDHVIKIWDMNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 580 ~~~~-~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
|... .++++..||.|.+||+.... ++...... ....+.+.|+++|+.|++|...|.+.+|++...
T Consensus 451 ptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 451 PTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred CcCceEEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 9865 45667789999999987543 33333333 345678888999999999999999999998743
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.3e-16 Score=156.89 Aligned_cols=199 Identities=17% Similarity=0.189 Sum_probs=163.0
Q ss_pred cEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc
Q 001403 798 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 876 (1084)
Q Consensus 798 ~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~ 876 (1084)
.+++|+++|..+++++ ||++|+|+..+...+.....|...|.++.||| |+++|++-+.| ..+||+..+|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999997 89999999888888888888999999999999 99999999999 899999999977766542
Q ss_pred --cccCEEEEEEcCCC-----CEEEEEeCCCcEEEEeCCCCceee-eeeeecCCCCccCCCCceEEEEccCCCEEEEE-e
Q 001403 877 --HSKRVTGLVFSDAL-----NILVSSGGDAQIFVWDVDGWGIQT-CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H 947 (1084)
Q Consensus 877 --h~~~V~~l~~spd~-----~~l~s~s~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~ 947 (1084)
-......+.|+.|+ .+.++...-+.|+.|++....... .+..+....+. .|++++.|+||+++|.| .
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~----siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK----SISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC----cceeEEEcCCCcEEEEecc
Confidence 22345678888877 344444556778888877644311 11122222222 59999999999999995 8
Q ss_pred CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001403 948 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 948 d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
||.|-|++..+.+++.-....|..-|+.+.|+||.+++++.+.|..+.|..+.-.
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 9999999999999998888899999999999999999999999999999887753
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-13 Score=151.05 Aligned_cols=330 Identities=13% Similarity=0.132 Sum_probs=200.8
Q ss_pred EEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCc
Q 001403 493 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 572 (1084)
Q Consensus 493 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~ 572 (1084)
++++-..+|.|.+.|..+.+....+......-..+.|+|||+++++++. ++.|.++|+.+++.+..+.... .
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~----~ 79 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG----N 79 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS----E
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC----C
Confidence 3456667899999999998888888766555556789999999999864 5679999999999998887644 5
Q ss_pred eEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCC-----CCCCcceEEEecCCCEEEEEEC-CCeEEEEEcCC
Q 001403 573 VSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLAVIAN-ENRIKILETPE 645 (1084)
Q Consensus 573 v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~~ 645 (1084)
...+++++||++++++. .++.+.++|.++.+.++.+.... ..+.+..+..+|....+++.-. .+.|.+.|...
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 78899999999998865 78999999999999998876532 2234567777887775555444 47777777665
Q ss_pred CCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccc
Q 001403 646 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 725 (1084)
Q Consensus 646 ~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 725 (1084)
...+..... ..
T Consensus 160 ~~~~~~~~i---------------------------------------------------------------------~~ 170 (369)
T PF02239_consen 160 PKNLKVTTI---------------------------------------------------------------------KV 170 (369)
T ss_dssp SSCEEEEEE---------------------------------------------------------------------E-
T ss_pred ccccceeee---------------------------------------------------------------------cc
Confidence 422211000 01
Q ss_pred cceEEEEEEecCCCeEEEee-cCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC
Q 001403 726 ANKISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 804 (1084)
Q Consensus 726 ~~~i~~l~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 804 (1084)
........|+|++++++++. .+..+-++|....+. +..+..|............|...-.--+.+.
T Consensus 171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-------------v~~i~~g~~p~~~~~~~~php~~g~vw~~~~ 237 (369)
T PF02239_consen 171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-------------VALIDTGKKPHPGPGANFPHPGFGPVWATSG 237 (369)
T ss_dssp -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-------------EEEEE-SSSBEETTEEEEEETTTEEEEEEEB
T ss_pred cccccccccCcccceeeecccccceeEEEeeccceE-------------EEEeeccccccccccccccCCCcceEEeecc
Confidence 12345678899999877654 356777777654322 1111112211100000000111100111222
Q ss_pred CCCEEE-EEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEE----eCCCeEEEEEcCCceeeeeecccc-
Q 001403 805 NDAYLF-SASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG----MDDSTILIYNARSSEVISKLEGHS- 878 (1084)
Q Consensus 805 dg~~l~-~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g----~~dg~i~iwd~~~~~~~~~l~~h~- 878 (1084)
.+...+ ..+.+.+.+||..+++.++++....+. .-+..+| +++++.+. ...++|.++|..+.+.+.++....
T Consensus 238 ~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~ 315 (369)
T PF02239_consen 238 LGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPG 315 (369)
T ss_dssp SSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT
T ss_pred ccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCC
Confidence 333332 223456678999999999999977766 7888899 88888887 455799999999998887776333
Q ss_pred cCEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceee
Q 001403 879 KRVTGLVFSDALNILVSSGGDA--QIFVWDVDGWGIQT 914 (1084)
Q Consensus 879 ~~V~~l~~spd~~~l~s~s~dg--~I~iwd~~~~~~~~ 914 (1084)
..+..+.|++||+.+..+..++ .|.+||..+.+...
T Consensus 316 ~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 316 KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp --EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 3589999999999776655443 69999999966544
|
... |
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-15 Score=152.96 Aligned_cols=197 Identities=21% Similarity=0.211 Sum_probs=150.6
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeee
Q 001403 839 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL 918 (1084)
Q Consensus 839 ~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 918 (1084)
.+++|++ +|..|++|+.||++|||+..+...+.....|.+.|.++.|||||+.|++.+.| ..+||++.++.....
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~--- 222 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR--- 222 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh---
Confidence 7899999 89999999999999999998888888888899999999999999999999999 799999999732111
Q ss_pred ecCCCCccCCCCceEEEEccCC---CE-EEE-E-eCCeEEEEEcCCcce-----eeEeecCCCCCEEEEEEccCCCEEEE
Q 001403 919 QTPDGVMTLAPSETHIQFHKDQ---TR-FLL-V-HETHLAIYEAEELTC-----LKQWFPISSVPISQATFSCDCRMVFT 987 (1084)
Q Consensus 919 ~~~~~~~~~~~~v~~~~~s~dg---~~-la~-~-~d~~i~vwd~~~~~~-----~~~~~~~h~~~v~~l~fs~dg~~l~t 987 (1084)
..+.+. ......+.|+.|+ .+ +|+ . .-+.|+.|++..... .++.. .....|++++.|+||++++.
T Consensus 223 ~t~~~k---~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 223 KTPFSK---DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred cCCccc---chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcEEEE
Confidence 111111 1257788999888 33 333 2 345577766643222 11111 12458999999999999999
Q ss_pred EeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 988 SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 988 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
|+.||.|.|+++.+.+...-.. ..|...| ..+.|+| |.+.++..+.|.+..|..+.-
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk-------~aH~~~V--T~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVK-------EAHLGFV--TGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeeh-------hhheeee--eeEEEcC-CcCcccccccCCceeEEEEee
Confidence 9999999999999987773332 2344434 4789999 588999999999999998865
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-14 Score=164.31 Aligned_cols=234 Identities=13% Similarity=0.140 Sum_probs=162.7
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC---CEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
..|.|||....... .+..|...+.+++|||||++||.++.+ ..|.+||+.+++... +..+.+| ...++|
T Consensus 184 ~~i~i~d~dg~~~~----~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~---~~~~~w 255 (429)
T PRK01742 184 YEVRVADYDGFNQF----IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGH---NGAPAF 255 (429)
T ss_pred EEEEEECCCCCCce----EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCc---cCceeE
Confidence 78999998765422 245678889999999999999988643 469999998875321 2223333 446899
Q ss_pred ecCCCcEEEEEE-eCCCcEEEE--ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEe-cCCeEEEEECCCCCceEee
Q 001403 442 SAPCKQISVITC-GDDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGARVDY 517 (1084)
Q Consensus 442 s~d~~~l~l~s~-~~d~~i~vw--d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~ 517 (1084)
+|||+ .|+.+ +.+|.+.|| |+.++. ...+..+...+.+..|+| ||..|+..+ .+|...+|+++........
T Consensus 256 SPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~g~~~I~~~~~~~~~~~~ 330 (429)
T PRK01742 256 SPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP--DGQSILFTSDRSGSPQVYRMSASGGGASL 330 (429)
T ss_pred CCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 99999 45544 467765555 666665 455666777788888854 667666554 6788899987654332222
Q ss_pred cCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEE
Q 001403 518 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 597 (1084)
Q Consensus 518 ~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 597 (1084)
..+.. ....|+|||+.++..+. ..+.+||+.+++........ ....+.|+|+|++|+.++.++.+.+|
T Consensus 331 l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~-----~~~~~~~sPdG~~i~~~s~~g~~~~l 398 (429)
T PRK01742 331 VGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF-----LDESPSISPNGIMIIYSSTQGLGKVL 398 (429)
T ss_pred ecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC-----CCCCceECCCCCEEEEEEcCCCceEE
Confidence 22222 45789999999988764 23777999988765433222 23457899999999999999988888
Q ss_pred EC--CCCeEEEEEcCCCCCCCcceEEEecC
Q 001403 598 DM--NKVQLLTTIDAGGGLPENPRICFNKN 625 (1084)
Q Consensus 598 d~--~~~~~~~~~~~~~~~~~v~~v~~s~~ 625 (1084)
.+ .+|.....+..+.. .+...+|+|-
T Consensus 399 ~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 399 QLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred EEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 75 35777777765433 4678889874
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.2e-14 Score=159.89 Aligned_cols=255 Identities=13% Similarity=0.122 Sum_probs=179.7
Q ss_pred ecCCCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEccCC----ccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCc
Q 001403 384 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 458 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspd-g~~las~~~dg~v~iwd~~~~----~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~ 458 (1084)
+..|...|..++.+++ +.++++|+.||+|++||...- ...+...++..-..++.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 6668888888888875 599999999999999998632 22233334444567899999999999 6888899999
Q ss_pred EEEEECCC--Cce-----eeEeccC-CCcEEEE-eecccCCCcEEEEEecCCeEEEEECCCCCceE--eecCCCCeEEEE
Q 001403 459 IKVWDAVT--GSR-----TYSFEGH-GAPVYSL-CPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRM 527 (1084)
Q Consensus 459 i~vwd~~~--g~~-----~~~~~~h-~~~v~~~-~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~ 527 (1084)
|++.+++. ++. ......+ .+.+.++ ++........++.+..-+.|..||+....... +.....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 99999875 221 1122222 3344444 33322222378888889999999998766544 344556689999
Q ss_pred EEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCC---CCEEEEEE--CCCcEEEEECCCC
Q 001403 528 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAG--DDHVIKIWDMNKV 602 (1084)
Q Consensus 528 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~--~dg~i~iwd~~~~ 602 (1084)
+.+|-+.+++.|+. .|.+.+||++=+.++....... ..++..+..+|- ....++++ ..+.|.+|++.+|
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 99999999999986 6779999999888877765443 356776666654 34555544 5788999999999
Q ss_pred eEEEEEcCCCCCC-----------------CcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 603 QLLTTIDAGGGLP-----------------ENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 603 ~~~~~~~~~~~~~-----------------~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
.....+......+ .....++...+..+.+|+.|..|+.||....
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 7777665431110 1112333344668899999999999998865
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-12 Score=140.32 Aligned_cols=335 Identities=15% Similarity=0.163 Sum_probs=201.7
Q ss_pred cEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEE
Q 001403 447 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR 526 (1084)
Q Consensus 447 ~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 526 (1084)
.+++++-..++.|.|.|..+.+.+.++......-..+.+ ++||+++++++.||.|.++|+.+.+....+.... ...+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 345667777999999999999999999865554344556 5688899999999999999999999877776544 5678
Q ss_pred EEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccc----ccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCC
Q 001403 527 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNK 601 (1084)
Q Consensus 527 ~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~ 601 (1084)
+++|+||++++++... .+.+.++|.++.+.++.+..... ....+..+..+|....++..- +.+.|.+-|...
T Consensus 83 i~~s~DG~~~~v~n~~---~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYE---PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEEE---TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEecC---CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 9999999999987642 56799999999999988765431 124577888888888666655 458888889877
Q ss_pred CeEE--EEEcCCCCCCCcceEEEecCCCEEEEE-ECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCc
Q 001403 602 VQLL--TTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 678 (1084)
Q Consensus 602 ~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~ 678 (1084)
.+.+ ..+.... ......|+|++++++++ ..++.|-++|..+++....+......-
T Consensus 160 ~~~~~~~~i~~g~---~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~------------------- 217 (369)
T PF02239_consen 160 PKNLKVTTIKVGR---FPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPH------------------- 217 (369)
T ss_dssp SSCEEEEEEE--T---TEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBE-------------------
T ss_pred ccccceeeecccc---cccccccCcccceeeecccccceeEEEeeccceEEEEeecccccc-------------------
Confidence 5544 3333222 25678999999987765 446789999998875554332100000
Q ss_pred eeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCC
Q 001403 679 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 758 (1084)
Q Consensus 679 ~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~ 758 (1084)
. .+...+. .+ ..+.+.. ....+...++.-...
T Consensus 218 -----------~-----------~~~~~~p-----------hp---~~g~vw~--~~~~~~~~~~~ig~~---------- 249 (369)
T PF02239_consen 218 -----------P-----------GPGANFP-----------HP---GFGPVWA--TSGLGYFAIPLIGTD---------- 249 (369)
T ss_dssp -----------E-----------TTEEEEE-----------ET---TTEEEEE--EEBSSSSEEEEEE------------
T ss_pred -----------c-----------ccccccc-----------CC---CcceEEe--eccccceecccccCC----------
Confidence 0 0000000 00 0011111 111122221111111
Q ss_pred ccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEE---e-C-CeEEEEEcCCceeEEEEcC
Q 001403 759 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA---S-G-GVISLYIVMTFKTILTIMP 833 (1084)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~---s-d-g~i~vwd~~~~~~~~~~~~ 833 (1084)
.+.+|+..+.+.+...... ... .-+..+||++++.+. + + ++|.++|.++.+...++..
T Consensus 250 ------------~v~v~d~~~wkvv~~I~~~----G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~ 312 (369)
T PF02239_consen 250 ------------PVSVHDDYAWKVVKTIPTQ----GGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP 312 (369)
T ss_dssp ------------TTT-STTTBTSEEEEEE-S----SSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH
T ss_pred ------------ccccchhhcCeEEEEEECC----CCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec
Confidence 2334555555545554432 223 677889999999998 3 3 7899999999988888753
Q ss_pred C-CCCeEEEEEcCCCCcEEEEEeCC--CeEEEEEcCCceeeeeec
Q 001403 834 P-SPTATSLAFNPHDNNVIAIGMDD--STILIYNARSSEVISKLE 875 (1084)
Q Consensus 834 ~-~~~i~~l~~s~~d~~~la~g~~d--g~i~iwd~~~~~~~~~l~ 875 (1084)
. ...+..+.|++ +|+.+.....+ +.|.+||..+.+.+.++.
T Consensus 313 ~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 313 GPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp HHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred cCCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 2 23599999999 67755544433 379999999999888876
|
... |
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.5e-15 Score=153.35 Aligned_cols=296 Identities=14% Similarity=0.146 Sum_probs=223.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
|.+|.+.|..|.|+..|..|++|+.|..|.+||+..+..... -..+|...|....|-|.....-+++++.||.+++=.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 778999999999999999999999999999999998865432 234899999888898875544799999999999876
Q ss_pred CC-CCcee--eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee---cCCCC---eEEEEEEcCCCC
Q 001403 464 AV-TGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGL---GCTRMAYSANGR 534 (1084)
Q Consensus 464 ~~-~g~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~---~i~~~~~s~d~~ 534 (1084)
+. +|.+. ..+..|.++|.-++..|. ....+.+++.|+.+.-.|++.......+ ..+.. ....++..|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~-sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPD-SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCC-CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 54 44433 455679999999988664 3367999999999999998876543322 22222 567888899776
Q ss_pred -EEEEEeeCCCCCeeEEEecCCCceE------eeeeeccc---cccCceEEEEEcCCCCEEEEEECCCcEEEEECCC--C
Q 001403 535 -RLFSCGTSKEGESFLVEWNESEGAI------KRTYQGLQ---LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--V 602 (1084)
Q Consensus 535 -~l~~~~~~~~~~~~i~~wd~~~~~~------~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~ 602 (1084)
.+++++. +.++++||.+.-.. +..+..+. ...-.|++++|+.++.-++++..|-.|++++... |
T Consensus 295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 5566554 66789998764221 22222221 1124589999999988899989999999995432 2
Q ss_pred ----------eEEEE-EcCCCCCCCcceEEE-ecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCce
Q 001403 603 ----------QLLTT-IDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 670 (1084)
Q Consensus 603 ----------~~~~~-~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 670 (1084)
..+.. +++|.....|..+-| .|..+++++|++=|.|.||+-.+++.++.+.+...-|+|+.-+|
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP---- 446 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP---- 446 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC----
Confidence 22223 566655555777765 57889999999999999999999999999988877888887764
Q ss_pred eeeeccCceeEecCCCCCCCCccceecccCccccccce
Q 001403 671 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 671 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
--..|++.+-|..|+||...
T Consensus 447 ------------------~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 447 ------------------HLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred ------------------CCchhhccCCccceeeecCC
Confidence 45568889999999999864
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.9e-14 Score=135.56 Aligned_cols=242 Identities=13% Similarity=0.139 Sum_probs=175.3
Q ss_pred CCCCCccEEEecCCCC----EEEEEeCCeEEEEEcCC--cee--EEEE-----cCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 001403 792 NSQEAVPCFALSKNDA----YLFSASGGVISLYIVMT--FKT--ILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDS 858 (1084)
Q Consensus 792 ~~~~~v~~l~~s~dg~----~l~~~sdg~i~vwd~~~--~~~--~~~~-----~~~~~~i~~l~~s~~d~~~la~g~~dg 858 (1084)
.|..+++.+.|.|+.. -+.+.++..+++|.+.. .+. ...+ ..+..++++..|..-+-++|.+.+-|.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 4889999999999874 23444567899999873 221 1111 234578999999987889999999999
Q ss_pred eEEEEEcCCce---eeeeecccccCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEE
Q 001403 859 TILIYNARSSE---VISKLEGHSKRVTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 934 (1084)
Q Consensus 859 ~i~iwd~~~~~---~~~~l~~h~~~V~~l~~spd~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 934 (1084)
+..|||+.++. ....+-+|..+|..++|+.++ ..+||.|.||.||++|+..-+-. ..+....... .+...+
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS--TIIYE~p~~~---~pLlRL 248 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS--TIIYEDPSPS---TPLLRL 248 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc--eEEecCCCCC---Ccceee
Confidence 99999999873 356788999999999999865 67899999999999999974422 2333222211 257888
Q ss_pred EEccCC-CEEEE-E-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeEEecc
Q 001403 935 QFHKDQ-TRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1010 (1084)
Q Consensus 935 ~~s~dg-~~la~-~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1010 (1084)
+|++.. +++|+ + ....|.|.|++.......-+.+|.+.|.+++|.| ....|.|++.|..+.+||+.+--......+
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 998854 66777 4 4457999999876655545778999999999999 467899999999999999987543211121
Q ss_pred ccccCCCCcccceeeeEEEECCCCCCEEEEEeC
Q 001403 1011 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1043 (1084)
Q Consensus 1011 ~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~ 1043 (1084)
...... +..|. .+.|+|..+..++.+..
T Consensus 329 ilay~a---~~EVN--qi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 329 ILAYTA---GGEVN--QIQWSSSQPDWIAICFG 356 (364)
T ss_pred hhhhhc---cceee--eeeecccCCCEEEEEec
Confidence 111111 23344 56777766778877653
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.9e-14 Score=146.32 Aligned_cols=248 Identities=10% Similarity=0.073 Sum_probs=156.3
Q ss_pred cCCCCEEEEEe-CCeEEEEEcCCceeEEEEc----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC----------
Q 001403 803 SKNDAYLFSAS-GGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---------- 867 (1084)
Q Consensus 803 s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~---------- 867 (1084)
.|.+--+..+- -|.+.+.|....+..+.+. -....++|+.|-|.+...++++-.+|.+++||..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 45666666665 4888888875522222111 12368999999997677888888999999997531
Q ss_pred ----ce--------------eeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCC
Q 001403 868 ----SE--------------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 929 (1084)
Q Consensus 868 ----~~--------------~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 929 (1084)
+. ++..+.--.+.|...+|||||++||+.+.||.+||+|..+.+ ++........
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYFG--- 333 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYFG--- 333 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhcc---
Confidence 11 111222224578899999999999999999999999999843 3334444333
Q ss_pred CceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEe
Q 001403 930 SETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1008 (1084)
Q Consensus 930 ~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~ 1008 (1084)
...|++|||||++|++ |.|.-|.||.+..++.+.. -.+|.+.|..|+|.| |.-+.-+++...=-|-.-......+
T Consensus 334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR-GqGHkSWVs~VaFDp---ytt~~ee~~~~~~~~~~~~~~~~~~ 409 (636)
T KOG2394|consen 334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR-GQGHKSWVSVVAFDP---YTTSTEEWNNFSGMDSTFSDVAHDF 409 (636)
T ss_pred ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe-ccccccceeeEeecc---cccccccccccccccccccchhccc
Confidence 7899999999999999 5889999999999888876 568999999999987 3333322211100000000000000
Q ss_pred ccccccCCCCcccceeeeEEEECCC-CCCEEEEEeCCCcEEEEcCCCCCCCcccCCCCCc
Q 001403 1009 LSTAYLRPTTSCLHVYPHAIAAHPL-KPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEI 1067 (1084)
Q Consensus 1009 ~~~~~~~~~~~~~~v~~~~~~~~p~-d~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~ 1067 (1084)
. ......+...+ .+++-.+.++ ....|.+++.|-++.+||+.|... -++||.-.
T Consensus 410 ~-~r~~~~~S~~~--~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L--~~~~p~~~ 464 (636)
T KOG2394|consen 410 E-IRANGTGSAEG--CPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL--VPHPPLYR 464 (636)
T ss_pred c-cccCCCCCcCC--CcccccccccceEEEeecccccceEEEEecchhhc--ccCCchhh
Confidence 0 00001110000 1111111110 135688999999999999977663 22555543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=163.88 Aligned_cols=236 Identities=17% Similarity=0.181 Sum_probs=156.5
Q ss_pred ccCCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEc
Q 001403 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 397 (1084)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fs 397 (1084)
++.+......+.+..|...+.+++|||||++||+.+++ .+ ...|.+||+.++...... .+.+| ...++||
T Consensus 187 ~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~--~~----~~~i~i~dl~tg~~~~l~-~~~g~---~~~~~wS 256 (429)
T PRK01742 187 RVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFE--NK----KSQLVVHDLRSGARKVVA-SFRGH---NGAPAFS 256 (429)
T ss_pred EEECCCCCCceEeccCCCccccceEcCCCCEEEEEEec--CC----CcEEEEEeCCCCceEEEe-cCCCc---cCceeEC
Confidence 33445555567788888899999999999999997664 11 267999999876533221 13333 3468999
Q ss_pred CCCCEEEEEe-CCCEEEEE--EccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-ceeeEe
Q 001403 398 PDGSLLGVAY-SKHIVQLY--AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSF 473 (1084)
Q Consensus 398 pdg~~las~~-~dg~v~iw--d~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g-~~~~~~ 473 (1084)
|||++|+++. .+|.+.|| |+.+++. . .+..+...+...+|+|||+. +++++..++...||++... .....+
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEEe
Confidence 9999999875 57766555 6656542 2 45567777889999999994 2334445788888876532 222223
Q ss_pred ccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEec
Q 001403 474 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 553 (1084)
Q Consensus 474 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd 553 (1084)
.+.. ....| ++||+.|+..+.++ +.+||+.++........ .....+.|+|||+++++++.++. ...+.+++
T Consensus 332 -~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~-~~~l~~~~ 402 (429)
T PRK01742 332 -GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGL-GKVLQLVS 402 (429)
T ss_pred -cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCC-ceEEEEEE
Confidence 3433 34556 55778888887765 45589887665432222 13356789999999999876322 22233333
Q ss_pred CCCceEeeeeeccccccCceEEEEEcCC
Q 001403 554 ESEGAIKRTYQGLQLQHNSVSVVHFDTA 581 (1084)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 581 (1084)
.+|+..+.+..+. +.+...+|+|-
T Consensus 403 -~~G~~~~~l~~~~---g~~~~p~wsp~ 426 (429)
T PRK01742 403 -ADGRFKARLPGSD---GQVKFPAWSPY 426 (429)
T ss_pred -CCCCceEEccCCC---CCCCCcccCCC
Confidence 3577777787766 67888889874
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-12 Score=127.72 Aligned_cols=241 Identities=13% Similarity=0.175 Sum_probs=172.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC-----CCcEEEEEC
Q 001403 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DKTIKVWDA 464 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-----d~~i~vwd~ 464 (1084)
....++|+.|...+++|..+| .+||+.+--+... ....+.+.+.-+..---.+.+.|+-|+. -+.|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 455599999999999999998 9999987532211 1112222222222222234333444433 247999997
Q ss_pred CCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECC-CCCceEeecCC--CCeEEEEEEcCCCCEEEEEee
Q 001403 465 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAP--GLGCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 465 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~--~~~i~~~~~s~d~~~l~~~~~ 541 (1084)
...+++.++. ...+|.++.+.. + .|+. -.++.|.+|.+. +.+....+... .....+++-..+...||.-+.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r--~--riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRR--D--RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcC--C--eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 7778887776 678899999843 2 4444 356789999987 44444444332 234445544445455554443
Q ss_pred CCCCCeeEEEecCCCceE--eeeeeccccccCceEEEEEcCCCCEEEEEECCCc-EEEEECCCCeEEEEEcCCCCCCCcc
Q 001403 542 SKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENP 618 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~ 618 (1084)
..|.|++-|+...+. -..+..|. ..|.+++.+-+|..+|++|..|+ |||||..+|..++.+........++
T Consensus 157 ---k~GqvQi~dL~~~~~~~p~~I~AH~---s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 157 ---KTGQVQIVDLASTKPNAPSIINAHD---SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred ---ccceEEEEEhhhcCcCCceEEEccc---CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 357799999876555 35666777 89999999999999999999998 7999999999999998777667899
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 619 RICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 619 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
+++|||+..+||++++.|++.|+.+...
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999999998764
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.1e-13 Score=133.86 Aligned_cols=299 Identities=12% Similarity=0.124 Sum_probs=192.0
Q ss_pred cceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCcccee
Q 001403 617 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 696 (1084)
Q Consensus 617 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 696 (1084)
+..++|++.-..++++..|-.|++|+.... ....++.
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks------------------------------------------ 137 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKS------------------------------------------ 137 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCCC-CCceecc------------------------------------------
Confidence 567889987777889999999999987752 2222211
Q ss_pred cccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeec
Q 001403 697 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 776 (1084)
Q Consensus 697 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 776 (1084)
.....|++++|-|.+...++.+..+.|.+|......... ..++
T Consensus 138 ---------------------------~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~-------r~~~--- 180 (445)
T KOG2139|consen 138 ---------------------------VSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNAN-------RNIR--- 180 (445)
T ss_pred ---------------------------hhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccc-------cccc---
Confidence 023457777887776666666777778888765432100 0000
Q ss_pred CCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEE
Q 001403 777 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG 854 (1084)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g 854 (1084)
.-+..+... +...+| .+|+++.+.+||..+++++ +..|.|||..++..+.......+.++-+.||| |+.+|..+
T Consensus 181 ~~s~~~~qv--l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaA 256 (445)
T KOG2139|consen 181 MMSTHHLQV--LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAA 256 (445)
T ss_pred cccccchhh--eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEe
Confidence 001111111 223334 7999999999999999998 67899999999887766655667899999999 89999999
Q ss_pred eCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee----------eeee------e
Q 001403 855 MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ----------TCRS------L 918 (1084)
Q Consensus 855 ~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~----------~~~~------~ 918 (1084)
.-|+..++|+.....-.....--++.|...+|+|+|++|..++. |.=++|.+...... .... +
T Consensus 257 t~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ 335 (445)
T KOG2139|consen 257 TCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEV 335 (445)
T ss_pred cccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhh
Confidence 99999999965543322233334558999999999998776543 33455555432110 0011 1
Q ss_pred ecCCCCccCCCCceEEEEccCCCEEEEEeCC---------eEEEEEcCCcceeeEeecCC--CCCEEEEEEcc---CCCE
Q 001403 919 QTPDGVMTLAPSETHIQFHKDQTRFLLVHET---------HLAIYEAEELTCLKQWFPIS--SVPISQATFSC---DCRM 984 (1084)
Q Consensus 919 ~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~---------~i~vwd~~~~~~~~~~~~~h--~~~v~~l~fs~---dg~~ 984 (1084)
....+....-+++.+++|.|.|.+||+...+ .|.+||....-.+.....+. ...-..++|+| +|.+
T Consensus 336 ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~l 415 (445)
T KOG2139|consen 336 TICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRL 415 (445)
T ss_pred hhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcE
Confidence 1112222223578999999999999995322 36667765433332221111 22345677776 6777
Q ss_pred EEEEeCCCcEEEEEcC
Q 001403 985 VFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 985 l~t~~~dg~i~vwd~~ 1000 (1084)
|..+=..|.+.-|++.
T Consensus 416 LsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 416 LSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEEeccCceEeeeeE
Confidence 8777777777777654
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-15 Score=167.47 Aligned_cols=215 Identities=15% Similarity=0.230 Sum_probs=157.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC--CCcEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV 461 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~--d~~i~v 461 (1084)
+..|+...+|++||-+.+.|+.|+..|.|+++++.+|.... ....|..+|+.+.=+.||.. .++.+. .--..+
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~--~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST--QLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce--eeeeccccCchHHH
Confidence 56688999999999999999999999999999999997665 67799999999999999994 443332 335779
Q ss_pred EECC-CCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee-cCC---CCeEEEEEEcCCCCEE
Q 001403 462 WDAV-TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAP---GLGCTRMAYSANGRRL 536 (1084)
Q Consensus 462 wd~~-~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~---~~~i~~~~~s~d~~~l 536 (1084)
|++. ++...+++.+ -.++.|+.+ ...-+.|.......+||+.+.....++ ... ...-....|+|+.+++
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred hccccccCccccccc----cceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 9976 4555566653 235566433 233444555567889999988776552 211 1133678899999988
Q ss_pred EEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCC
Q 001403 537 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 616 (1084)
Q Consensus 537 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 616 (1084)
+-- =.+||++..+.++.|.... ..+ .-.|+|.|..++.-++ |||+++.+.++....-.
T Consensus 1246 lnd---------GvLWDvR~~~aIh~FD~ft---~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld---- 1303 (1516)
T KOG1832|consen 1246 LND---------GVLWDVRIPEAIHRFDQFT---DYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD---- 1303 (1516)
T ss_pred eeC---------ceeeeeccHHHHhhhhhhe---ecc-cccccCCCceEEeech-----hhhhHHHHHHhcCcccc----
Confidence 753 2579999888887776544 222 2359999999999876 99999998888775432
Q ss_pred cceEEEecCCCEEEE
Q 001403 617 NPRICFNKNGTLLAV 631 (1084)
Q Consensus 617 v~~v~~s~~~~~l~~ 631 (1084)
-..|.|+..|..+..
T Consensus 1304 qc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1304 QCAVTFNSTGDVMYA 1318 (1516)
T ss_pred ceEEEeccCccchhh
Confidence 257888888876654
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.1e-10 Score=116.50 Aligned_cols=199 Identities=14% Similarity=0.120 Sum_probs=127.6
Q ss_pred CCCCccEEEecCCCCEEEEEeC-CeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCC----eEEEEEcCC
Q 001403 793 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARS 867 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~sd-g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg----~i~iwd~~~ 867 (1084)
.-+.|.++..++||++++++.+ ..+.+.|+++|.....-+...+-|+..+|+| +++++|.+--+| .|++||+.+
T Consensus 400 ~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 400 DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCC
Confidence 3456778889999999998885 7899999999988766666778899999999 999999988776 799999998
Q ss_pred ceeeeeecccccCEEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCceeeeeeeecCCCCcc--------------
Q 001403 868 SEVISKLEGHSKRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMT-------------- 926 (1084)
Q Consensus 868 ~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~-------dg~I~iwd~~~~~~~~~~~~~~~~~~~~-------------- 926 (1084)
++....-. ..+.=.+-+|.||+++|..-+. |..+.=+....-. ...++....+...
T Consensus 479 ~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~~vs--kPylv~L~~g~~sP~~q~p~~~~~ea~ 555 (668)
T COG4946 479 GKIYDVTT-PTAYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQRVS--KPYLVVLGRGYYSPFNQPPDEANSEAG 555 (668)
T ss_pred CeEEEecC-CcccccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEeeec--cceEEEecCCCCChhhcCchhcCcccc
Confidence 87654322 2233355688899998876543 3333222221100 0000000000000
Q ss_pred ----------------CCCCceEEEEccCCCEEEEE---------------eCCeEEEEEcCCcceeeEeecCCCCCEEE
Q 001403 927 ----------------LAPSETHIQFHKDQTRFLLV---------------HETHLAIYEAEELTCLKQWFPISSVPISQ 975 (1084)
Q Consensus 927 ----------------~~~~v~~~~~s~dg~~la~~---------------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 975 (1084)
..+.-.+++=-.+|+.+.-+ ..|.+.+||+++.+.-. -...+++
T Consensus 556 e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e-----~k~nvss 630 (668)
T COG4946 556 EVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEE-----YKDNVSS 630 (668)
T ss_pred ceehhhhcccccccccCccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHH-----Hhcccce
Confidence 00111233333344333221 13456677776554322 1457899
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCC
Q 001403 976 ATFSCDCRMVFTSFVDGTLSIHEASN 1001 (1084)
Q Consensus 976 l~fs~dg~~l~t~~~dg~i~vwd~~~ 1001 (1084)
+..|+||+.+.. -.||.+++++++.
T Consensus 631 ~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 631 FRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred EEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 999999999998 6899999999986
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-13 Score=133.95 Aligned_cols=238 Identities=13% Similarity=0.098 Sum_probs=181.6
Q ss_pred CCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEE
Q 001403 333 GSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 412 (1084)
Q Consensus 333 h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v 412 (1084)
-..+|+|.||++|++.+|++-.+ ..|.||.......-.....+..|...|++|.|+|.+..|++|+.|..-
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~---------~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drna 79 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNN---------HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNA 79 (361)
T ss_pred ccCceeeeeecCCCceEEeccCC---------ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCc
Confidence 34589999999999999997544 789999987766444445688899999999999999999999999999
Q ss_pred EEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee----eEeccCCCcEEEEeeccc
Q 001403 413 QLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----YSFEGHGAPVYSLCPHAK 488 (1084)
Q Consensus 413 ~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~----~~~~~h~~~v~~~~~~~~ 488 (1084)
+||....+..-++...+..|...++++.|+|.+. .+++|+....|.||-.+...-= +.-+.+...|.++.|+++
T Consensus 80 yVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 80 YVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred cccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence 9999966666666667888999999999999999 7999999999999987754321 222446788999999774
Q ss_pred CCCcEEEEEecCCeEEEEEC-----CCC-------------CceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEE
Q 001403 489 ENIHFIFSISVDGKIKAWLY-----DSL-------------GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 550 (1084)
Q Consensus 489 ~~~~~l~s~s~dg~i~iwd~-----~~~-------------~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 550 (1084)
+-+|++|+.|+..+++.. +.. ....++....+.+..+.|+|+|..|+-.+. +..+.
T Consensus 158 --nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H----ds~v~ 231 (361)
T KOG1523|consen 158 --NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH----DSTVS 231 (361)
T ss_pred --cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC----CCceE
Confidence 468999999999999853 211 111233356678999999999999999886 55688
Q ss_pred EecCCCce-EeeeeeccccccCceEEEEEcCCCCEEEEEECC
Q 001403 551 EWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 591 (1084)
Q Consensus 551 ~wd~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 591 (1084)
+-|..... .+....... -+..++.|-.+. .++.++.|
T Consensus 232 ~~da~~p~~~v~~~~~~~---lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 232 FVDAAGPSERVQSVATAQ---LPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred EeecCCCchhccchhhcc---CCceeeEeecCC-ceeecCCC
Confidence 88876554 233333333 566777776543 45555554
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.7e-12 Score=128.07 Aligned_cols=288 Identities=15% Similarity=0.157 Sum_probs=188.2
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC-CCCEEEEEeCCCEEEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQL 414 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~las~~~dg~v~i 414 (1084)
.+..++|++--.-+|++..| -.|+||+-+....... -..-...|+|++|-| .++-|++|+..| |.|
T Consensus 100 dlr~~aWhqH~~~fava~nd---------dvVriy~ksst~pt~L---ks~sQrnvtclawRPlsaselavgCr~g-Ici 166 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATND---------DVVRIYDKSSTCPTKL---KSVSQRNVTCLAWRPLSASELAVGCRAG-ICI 166 (445)
T ss_pred ceeeEeechhhhhhhhhccC---------cEEEEeccCCCCCcee---cchhhcceeEEEeccCCcceeeeeecce-eEE
Confidence 67788888866667777666 8999999875222211 122346899999999 456788888877 999
Q ss_pred EEccCCccc-----------cceeeeecccccEeEEEeecCCCcEEEEEEeC-CCcEEEEECCCCceeeEeccCCCcEEE
Q 001403 415 YAYHGGSDA-----------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPVYS 482 (1084)
Q Consensus 415 wd~~~~~~~-----------~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-d~~i~vwd~~~g~~~~~~~~h~~~v~~ 482 (1084)
|.....-.. .++..-.+| .+|+++.|.+||. .+++++. |..|.|||+.+|..+.-.....+.+.-
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~sl 243 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSL 243 (445)
T ss_pred EEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccccCCCceee
Confidence 987532111 112233355 5899999999999 6777765 678999999999877555445667888
Q ss_pred EeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecC--CCce--
Q 001403 483 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE--SEGA-- 558 (1084)
Q Consensus 483 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~--~~~~-- 558 (1084)
+.|+| |+.+|+.+.-|+..++|+....-.........+.|...+|+|+|++|+..... ...++-... +.+.
T Consensus 244 LkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl~f~~~~~~~~ 318 (445)
T KOG2139|consen 244 LKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSLTFDGEDSVFL 318 (445)
T ss_pred EEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEEeecCCCcccc
Confidence 89955 77899999999999999654433333333334489999999999988766531 222222111 1110
Q ss_pred ---------Eee------eeeccccccCceEEEEEcCCCCEEEEEECC--------CcEEEEECCCCeEEEEEc-CCCCC
Q 001403 559 ---------IKR------TYQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTTID-AGGGL 614 (1084)
Q Consensus 559 ---------~~~------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~-~~~~~ 614 (1084)
.+. ...+...-.+++.+++|.|.|.++++.-.. +.|.+||.+..-.+.... +....
T Consensus 319 ~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~g 398 (445)
T KOG2139|consen 319 RPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGG 398 (445)
T ss_pred CcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccC
Confidence 000 111111123678999999999999986533 346778876544433331 11111
Q ss_pred CCcceEEEec---CCCEEEEEECCCeEEEEEcC
Q 001403 615 PENPRICFNK---NGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 615 ~~v~~v~~s~---~~~~l~~~~~dg~i~iwd~~ 644 (1084)
..-..++|+| ++.+|.++-..|.+.-|++.
T Consensus 399 e~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 399 EYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 1235677776 67778888777888777654
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-12 Score=128.25 Aligned_cols=240 Identities=12% Similarity=0.178 Sum_probs=168.7
Q ss_pred CccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCC--CCeEEEEEcCCCCcEEE-EEeCC------CeEEEEEcC
Q 001403 796 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIA-IGMDD------STILIYNAR 866 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~la-~g~~d------g~i~iwd~~ 866 (1084)
...+++|..|...++++.+...++|+.+..+.......+. -.+..+-|- .++|| +|+.+ ..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEecc
Confidence 3455899999999999999899999998755433322222 223333342 23444 34433 389999966
Q ss_pred CceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-
Q 001403 867 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL- 945 (1084)
Q Consensus 867 ~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~- 945 (1084)
..+++.++. ...+|.++.+.+| .|+.. ..+.|+||.....- +...++.+..... +..+++=..+-.+||.
T Consensus 84 k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~-k~l~~~et~~NPk----GlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 84 KERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNP-KLLHVIETRSNPK----GLCSLCPTSNKSLLAFP 154 (346)
T ss_pred cCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCCh-hheeeeecccCCC----ceEeecCCCCceEEEcC
Confidence 667777776 6788999999876 34444 45679999998532 1222333322222 2333333334445555
Q ss_pred E-eCCeEEEEEcCCcce-eeEeecCCCCCEEEEEEccCCCEEEEEeCCCc-EEEEEcCCCceeEEeccccccCCCCcccc
Q 001403 946 V-HETHLAIYEAEELTC-LKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLH 1022 (1084)
Q Consensus 946 ~-~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1022 (1084)
| .-|.|.|-|+...+. .......|.+.|.+++.+-+|.++||+|..|+ |||||..+|+.++.+.... ....
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~------d~A~ 228 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV------DRAD 228 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC------chhe
Confidence 4 558999999986665 23456789999999999999999999999998 8999999999998877332 2233
Q ss_pred eeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 1023 VYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1023 v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
++ +++|+| |..+|+++++-|+|+|+.+....
T Consensus 229 iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 229 IY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 55 789999 58999999999999999997755
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.2e-13 Score=152.97 Aligned_cols=269 Identities=16% Similarity=0.189 Sum_probs=187.8
Q ss_pred cceeeecccCCCCceEEEEcCCC-ceeeeecccccCccccccceEEEEEcCCcccc---ce-eeeecCCCCCeEEEEEcC
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQ-HTLLLGLWDVNSGQKLFIRNFKVWDIGACSML---FK-TALVRDPGVSVNRVVWSP 398 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg-~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~---~~-~~~~~~h~~~V~~v~fsp 398 (1084)
+..+..|+.|+..|..++.+++. .++++|+.| |+|+||+....... +. ...+.-....+.++.+.+
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~D---------GtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDD---------GTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCC---------ceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc
Confidence 56888999999999999988766 999999988 99999999643221 11 112222467899999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCC--cccc--cee--eeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001403 399 DGSLLGVAYSKHIVQLYAYHGG--SDAR--QQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 472 (1084)
Q Consensus 399 dg~~las~~~dg~v~iwd~~~~--~~~~--~~~--~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~ 472 (1084)
.|..+|+++.||.|++.+++-. +... +.. .......-|..-+|....+...++.+..-+.|..||+++...+.+
T Consensus 1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 9999999999999999998762 1110 000 112222234555565554433677777888999999988766655
Q ss_pred ec--cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCC-CeEEEEEEcC---CCCEEEEEeeCCCCC
Q 001403 473 FE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSA---NGRRLFSCGTSKEGE 546 (1084)
Q Consensus 473 ~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~---d~~~l~~~~~~~~~~ 546 (1084)
++ -..+.|++++.+ +.++++++|...|.+.+||++-......+..+. .++..++..| .....++++.. +.
T Consensus 1189 lk~~~~hG~vTSi~id--p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~--~~ 1264 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVID--PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS--SN 1264 (1431)
T ss_pred hhcCccccceeEEEec--CCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc--CC
Confidence 43 345789999994 466799999999999999999877766654333 3566665554 44566666542 46
Q ss_pred eeEEEecCCCceEeeeeeccc--------c--------ccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEE
Q 001403 547 SFLVEWNESEGAIKRTYQGLQ--------L--------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 605 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~--------~--------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 605 (1084)
+.|.+|++.+|.....+.... . +.-......+..-+..+++|+.|+.|+.||....+..
T Consensus 1265 nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 679999999987766654331 0 0011223344445678899999999999998775544
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-14 Score=148.45 Aligned_cols=269 Identities=15% Similarity=0.157 Sum_probs=214.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC
Q 001403 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 467 (1084)
Q Consensus 388 ~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g 467 (1084)
...-..+.++.+|++|+.|+..|.|..+|+.+++....+ . -...|.++.|-.+.+ +++.+ ..+.+.||| ..|
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei---~-v~Etv~Dv~~LHneq--~~AVA-QK~y~yvYD-~~G 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI---N-VMETVRDVTFLHNEQ--FFAVA-QKKYVYVYD-NNG 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeee---e-hhhhhhhhhhhcchH--HHHhh-hhceEEEec-CCC
Confidence 446677999999999999999999999999998765532 2 345689999998888 55554 467899999 889
Q ss_pred ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCe
Q 001403 468 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 547 (1084)
Q Consensus 468 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 547 (1084)
..++.++.| ..|..+.|.|. --+|++++..|.++.-|+..++....+....+.+..|+-+|-+..+-+|.. +|
T Consensus 201 tElHClk~~-~~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nG 273 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLPY--HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NG 273 (545)
T ss_pred cEEeehhhc-Cchhhhcccch--hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cc
Confidence 889888855 45778888654 368889999999999999999998888888889999999999888888765 78
Q ss_pred eEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC
Q 001403 548 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 627 (1084)
Q Consensus 548 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 627 (1084)
+|.+|...+.+++..+..|. ++|.++++.++|.++++++.|..++|||++.-..+.++.... ....+++|..|
T Consensus 274 tVSlWSP~skePLvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~---~a~~ls~Sqkg- 346 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH---PASNLSLSQKG- 346 (545)
T ss_pred eEEecCCCCcchHHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC---Ccccccccccc-
Confidence 89999999999999999998 999999999999999999999999999999887776665422 35678888766
Q ss_pred EEEEEECCCeEEEEEcCCC------CeeeeccccccceeEEEEcCCCceeeeeccCcee
Q 001403 628 LLAVIANENRIKILETPES------NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 680 (1084)
Q Consensus 628 ~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~ 680 (1084)
.||.+ ....+.||.-... .+.-. ....+.|..+.|+|...++++|-..|.-
T Consensus 347 lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~-H~~~~~V~~l~FcP~EDvLGIGH~~G~t 403 (545)
T KOG1272|consen 347 LLALS-YGDHVQIWKDALKGSGHGETPYMN-HRCGGPVEDLRFCPYEDVLGIGHAGGIT 403 (545)
T ss_pred ceeee-cCCeeeeehhhhcCCCCCCcchhh-hccCcccccceeccHHHeeeccccCCce
Confidence 34443 4457899953321 11111 1223478999999999999988777643
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.7e-13 Score=130.46 Aligned_cols=232 Identities=14% Similarity=0.160 Sum_probs=178.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC-C
Q 001403 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-T 466 (1084)
Q Consensus 388 ~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~-~ 466 (1084)
..+|+|.+|++|+..+|.+.....|.||.....+......++..|...|+.++|+|... .|++|+.|..-.||... .
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCCC
Confidence 46999999999999999999999999999999887777779999999999999999998 69999999999999983 3
Q ss_pred C--ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE----eecCCCCeEEEEEEcCCCCEEEEEe
Q 001403 467 G--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSCG 540 (1084)
Q Consensus 467 g--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~d~~~l~~~~ 540 (1084)
+ ++.-.+..++...+++.|+|. ++.+++|+.-..|.+|-++..+.-. .-......|.++.|.|++-+|++++
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~--enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPK--ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CeeccceeEEEeccceeeEeecCc--CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 3 344556678999999999765 4689999999999999887655432 2334456789999999999999998
Q ss_pred eCCCCCeeEEEecC-----CC-------------ceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 001403 541 TSKEGESFLVEWNE-----SE-------------GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 602 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~-----~~-------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 602 (1084)
. |+..+++.. +. |+++..+. ...+.+..+.|+|+|..|+-.+.|..+.+-|....
T Consensus 166 ~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~---~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 166 T----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS---SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred c----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc---cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 7 444555532 11 22222332 22478999999999999999999999999998776
Q ss_pred e-EEEEEcCCCCCCCcceEEEecCCCEEEEE
Q 001403 603 Q-LLTTIDAGGGLPENPRICFNKNGTLLAVI 632 (1084)
Q Consensus 603 ~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 632 (1084)
. .+....... -+..++.|-.+...++.|
T Consensus 239 ~~~v~~~~~~~--lP~ls~~~ise~~vv~ag 267 (361)
T KOG1523|consen 239 SERVQSVATAQ--LPLLSVSWISENSVVAAG 267 (361)
T ss_pred chhccchhhcc--CCceeeEeecCCceeecC
Confidence 5 233332221 235666676655444444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.4e-12 Score=134.67 Aligned_cols=508 Identities=12% Similarity=0.139 Sum_probs=303.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCcc------------ccceeeeecccccEeEEEeecCCCcEEEEEEe
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 454 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~------------~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~ 454 (1084)
......|++|+....|+|+|+.||.++|-.+.+... +..-.++.||.+.|.-+.|+.+.+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 346788999999999999999999999998875422 222336889999999999998887 688899
Q ss_pred CCCcEEEEECCCCceeeEec--cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCC
Q 001403 455 DDKTIKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN 532 (1084)
Q Consensus 455 ~d~~i~vwd~~~g~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d 532 (1084)
.+|-|.||-+-.|.-...+. ...+.|.+++| +.||..+.....||.|.+=.++... +..-...+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEE--cCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeeccc
Confidence 99999999988876554432 24567888999 5578899999999998876665422 2222222334457889999
Q ss_pred CCEEEEEeeCCCCCeeEEEecCCCce-------Eeeeeec-cccccCceEEEEE--------cCCCCEEEEEECCCcEEE
Q 001403 533 GRRLFSCGTSKEGESFLVEWNESEGA-------IKRTYQG-LQLQHNSVSVVHF--------DTAKDQILAAGDDHVIKI 596 (1084)
Q Consensus 533 ~~~l~~~~~~~~~~~~i~~wd~~~~~-------~~~~~~~-~~~~~~~v~~~~~--------s~~~~~l~~~~~dg~i~i 596 (1084)
.+.++.+-. ++.+.++|....- +.....+ .......+..+.| -|+...++++..+|.+.|
T Consensus 168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 988877654 4558888865321 1001111 1101122444444 357889999999999988
Q ss_pred EECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCC---------eEEEEEcCCCCeeeeccccccceeEEEEcCC
Q 001403 597 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN---------RIKILETPESNSVDAAGVLSDNLRKLSVNPI 667 (1084)
Q Consensus 597 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~ 667 (1084)
..-.+...-..+... ..+....|+++|..|++++.+. .|.+|. .-|..+.+++.....|+++.|-
T Consensus 244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWE-- 317 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWE-- 317 (1189)
T ss_pred hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEc--
Confidence 865544333333322 2367889999999999998752 222222 2233344444444444444443
Q ss_pred CceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecC
Q 001403 668 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 747 (1084)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 747 (1084)
..|-+++. ..|
T Consensus 318 --------------------------------------------------------------------g~gLriA~-Avd 328 (1189)
T KOG2041|consen 318 --------------------------------------------------------------------GTGLRIAI-AVD 328 (1189)
T ss_pred --------------------------------------------------------------------CCceEEEE-Eec
Confidence 22222111 112
Q ss_pred CceEEeeccCCcc----------CcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCe
Q 001403 748 GVHLMWRWPRNDL----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV 816 (1084)
Q Consensus 748 g~i~vw~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~ 816 (1084)
+.|.+=++...-. ...+.......+..||..+.+.... .-....++++..+--.|+.-. ++.
T Consensus 329 sfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK-------~V~~~~~~a~~~ehCvL~~~~d~~~ 401 (1189)
T KOG2041|consen 329 SFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK-------TVTHFENMAFYREHCVLINRQDDGV 401 (1189)
T ss_pred ceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh-------hhcceeehheecccEEEEeccccCC
Confidence 2222211111000 0000011112355677766653322 233456677776655555544 455
Q ss_pred EEEEEc-CCceeEEEEc-----C-----CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee---------------
Q 001403 817 ISLYIV-MTFKTILTIM-----P-----PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--------------- 870 (1084)
Q Consensus 817 i~vwd~-~~~~~~~~~~-----~-----~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~--------------- 870 (1084)
+.-++. ++...+..+. + .-..|.-.-..- ++..++.++.+. +.+|.....+.
T Consensus 402 i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e~-~~iWhy~~pK~~s~l~~~k~rkegr~ 479 (1189)
T KOG2041|consen 402 IPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEER-YFIWHYVLPKFNSVLAGVKIRKEGRF 479 (1189)
T ss_pred CcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEecccc-EEEEEEeccchhhhhhhhhhcccccc
Confidence 544422 1111111110 0 001121111122 566777777664 77887543211
Q ss_pred -----------------eeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceE
Q 001403 871 -----------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 933 (1084)
Q Consensus 871 -----------------~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 933 (1084)
..++.|..++|.+++.+ .++|..+-..|.|.-+.+....... ... ....+.+
T Consensus 480 h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n-----~y~----~n~~~y~ 548 (1189)
T KOG2041|consen 480 HGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTN-----SYP----VNPSIYS 548 (1189)
T ss_pred cCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeee-----ccc----cCchhee
Confidence 24455667788888886 5788889999999999998843222 111 1125888
Q ss_pred EEEccCCCEEEE-EeCCeEEEEEcC---CcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 001403 934 IQFHKDQTRFLL-VHETHLAIYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 998 (1084)
Q Consensus 934 ~~~s~dg~~la~-~~d~~i~vwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd 998 (1084)
++..-+...+|+ ---|.+.+.|+. +|..+..+.......|+.+.|..|...|+.--+...+.|++
T Consensus 549 ~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifr 617 (1189)
T KOG2041|consen 549 IKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFR 617 (1189)
T ss_pred EeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEec
Confidence 999999988888 356777777765 46666555555677899999988877666555555555554
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-10 Score=133.29 Aligned_cols=259 Identities=14% Similarity=0.130 Sum_probs=179.9
Q ss_pred ceEEEEEcCCcccccee---eeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKT---ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~---~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
..+.+||+..+...... ..+..|...=.-- -.+.+++++..-+.+..=+..-. .+..-.+.|....+
T Consensus 26 p~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~---l~~~~~v~~~~~~~v~~~~~~~~-------~~~~~s~wi~g~~l 95 (967)
T KOG0974|consen 26 PEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK---LLSGKIVTCAKSDEVYVKEASNQ-------IIERFSDWIFGAKL 95 (967)
T ss_pred CceEEeeCCchhHhhhhhhhcccccccccccce---eccceEEEEEeecceeecchhhh-------hhhhccccccccch
Confidence 67899999876543221 2233441000000 12345555544433333322221 11122333444556
Q ss_pred ecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE-EE-EeecccCCCcEEEEEecCCeEEEEECCCCCceEeecC
Q 001403 442 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-YS-LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 519 (1084)
Q Consensus 442 s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v-~~-~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 519 (1084)
.-+.+ .++.+..++.+.+||...+.....+....... .+ +.+-.+.+.-++++|+.-+.|.+|++...+....+.+
T Consensus 96 ~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~G 173 (967)
T KOG0974|consen 96 FEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKG 173 (967)
T ss_pred hhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecc
Confidence 66666 57777778999999998888776665332211 11 2222244557899999999999999986555557889
Q ss_pred CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEee-eeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEE
Q 001403 520 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 598 (1084)
Q Consensus 520 ~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 598 (1084)
|.+.|.++.++.||+++++++. |..+++|++.+++... ..-+|. ..+..++|.|+ .++++++|-+.++|+
T Consensus 174 HeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~~~fgHs---aRvw~~~~~~n--~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 174 HEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGCTGFGHS---ARVWACCFLPN--RIITVGEDCTCRVWG 244 (967)
T ss_pred cCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCccccccc---ceeEEEEeccc--eeEEeccceEEEEEe
Confidence 9999999999999999999986 6679999999988776 555666 88999999997 999999999999997
Q ss_pred CCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 599 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
.. +..+..+..|.. ..+..++..++....++++.|+.+++|+....
T Consensus 245 ~~-~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 245 VN-GTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred cc-cceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 65 444456666544 35889999999999999999999999998754
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.7e-14 Score=145.18 Aligned_cols=245 Identities=13% Similarity=0.190 Sum_probs=170.8
Q ss_pred eeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC--CCCEE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLL 403 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~l 403 (1084)
..+.|.||++.|.|++|+.||.+||+|+.| -.+.|||.-..+.. ..+-.||...|.++.|-| +.+.+
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD---------~r~ivWd~~~~Kll--hsI~TgHtaNIFsvKFvP~tnnriv 110 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDD---------TRLIVWDPFEYKLL--HSISTGHTANIFSVKFVPYTNNRIV 110 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCc---------ceEEeecchhccee--eeeecccccceeEEeeeccCCCeEE
Confidence 456799999999999999999999999998 89999999844433 345789999999999999 67789
Q ss_pred EEEeCCCEEEEEEccCCc-------cccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc-------e
Q 001403 404 GVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-------R 469 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~-------~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~-------~ 469 (1084)
++|..|..|+++|+...+ ...+...+..|...|..++-.|++.. .+.++++||+|+-+|++... +
T Consensus 111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~~~~ 189 (758)
T KOG1310|consen 111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPDEDC 189 (758)
T ss_pred EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCccccc
Confidence 999999999999998521 12233356689999999999999965 78999999999999997532 1
Q ss_pred ee---EeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE----e-ecCCCCeEEEEE-EcCCCCEEEEEe
Q 001403 470 TY---SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----D-YDAPGLGCTRMA-YSANGRRLFSCG 540 (1084)
Q Consensus 470 ~~---~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----~-~~~~~~~i~~~~-~s~d~~~l~~~~ 540 (1084)
.. .+...--...++.++|.. ..+|+.|+.|-..++||.+...... . ...+.....|+. |+|.+- ..
T Consensus 190 ~~~l~ny~~~lielk~ltisp~r-p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn 264 (758)
T KOG1310|consen 190 PSILVNYNPQLIELKCLTISPSR-PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----KN 264 (758)
T ss_pred cHHHHHhchhhheeeeeeecCCC-CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----cC
Confidence 11 111112345677787764 4799999999999999953211111 0 011111222222 222211 00
Q ss_pred eCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 001403 541 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 608 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 608 (1084)
..+...... ..++.+.|+|+|..|++.-....|+++|+..++....+
T Consensus 265 --------------~~gn~~~~~-------~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 265 --------------SQGNLDRYI-------TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred --------------cccccccce-------eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 001110000 23677899999998888777778999999887765544
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-12 Score=147.49 Aligned_cols=238 Identities=11% Similarity=0.144 Sum_probs=157.6
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe---CCCEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~---~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
..|.+||........ +..+...+.+.+|||||+.||..+ .+..|.+|++.+|+... +....+.+..++|
T Consensus 179 ~~l~~~d~dg~~~~~----lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~----l~~~~~~~~~~~~ 250 (429)
T PRK03629 179 YELRVSDYDGYNQFV----VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ----VASFPRHNGAPAF 250 (429)
T ss_pred eeEEEEcCCCCCCEE----eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ccCCCCCcCCeEE
Confidence 678889887554322 233667899999999999999764 24579999998875322 2223334557899
Q ss_pred ecCCCcEEEEEEeCCC--cEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecC-CeEEEE--ECCCCCceEe
Q 001403 442 SAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKIKAW--LYDSLGARVD 516 (1084)
Q Consensus 442 s~d~~~l~l~s~~~d~--~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-g~i~iw--d~~~~~~~~~ 516 (1084)
+|||+.+ +++.+.++ .|.+||+++++... +..+...+....|+ +||+.|+..+.+ |...+| ++.++.. ..
T Consensus 251 SPDG~~L-a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wS--PDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~ 325 (429)
T PRK03629 251 SPDGSKL-AFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWF--PDSQNLAYTSDQAGRPQVYKVNINGGAP-QR 325 (429)
T ss_pred CCCCCEE-EEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEEC--CCCCEEEEEeCCCCCceEEEEECCCCCe-EE
Confidence 9999952 23334444 58999998887543 44444566777885 467777766654 455555 5555433 33
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCc---
Q 001403 517 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV--- 593 (1084)
Q Consensus 517 ~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--- 593 (1084)
+...........|+|||++++..+... +...|++||+.+++... +... .......|+|||+.|+.++.++.
T Consensus 326 lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~~-Lt~~----~~~~~p~~SpDG~~i~~~s~~~~~~~ 399 (429)
T PRK03629 326 ITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQV-LTDT----FLDETPSIAPNGTMVIYSSSQGMGSV 399 (429)
T ss_pred eecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeEE-eCCC----CCCCCceECCCCCEEEEEEcCCCceE
Confidence 333444556789999999998876432 35579999998887543 3221 12345789999999999887764
Q ss_pred EEEEECCCCeEEEEEcCCCCCCCcceEEEec
Q 001403 594 IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 624 (1084)
Q Consensus 594 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 624 (1084)
+.++++. |.....+..+.. .+...+|+|
T Consensus 400 l~~~~~~-G~~~~~l~~~~~--~~~~p~Wsp 427 (429)
T PRK03629 400 LNLVSTD-GRFKARLPATDG--QVKFPAWSP 427 (429)
T ss_pred EEEEECC-CCCeEECccCCC--CcCCcccCC
Confidence 6777774 555555554332 467788876
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-08 Score=123.78 Aligned_cols=509 Identities=12% Similarity=0.132 Sum_probs=285.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEE----EccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLY----AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iw----d~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
..+.|.++.|-+|...++.+..+|.|.+. +..+.. +. ....-...|.+++||||+. +|+....++++.+-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 45789999999999999999999999999 544432 11 2334566899999999999 56666557788776
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCC----------c----eEeecCCCCeEEEEE
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG----------A----RVDYDAPGLGCTRMA 528 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~----------~----~~~~~~~~~~i~~~~ 528 (1084)
+ .+-..+.+..-+..... ....++.|..+.=.-+.=..++ . ...+. ....-..++
T Consensus 148 t-~~fd~i~E~~l~~~~~~---------~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~IS 216 (928)
T PF04762_consen 148 T-RDFDPISEVPLDSDDFG---------ESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRIS 216 (928)
T ss_pred e-ccceEEEEeecCccccC---------CCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEE
Confidence 5 55555554433221110 0112222111100000000000 0 01111 233556899
Q ss_pred EcCCCCEEEEEeeCCC-C-CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEEC---CCcEEEEECCCCe
Q 001403 529 YSANGRRLFSCGTSKE-G-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQ 603 (1084)
Q Consensus 529 ~s~d~~~l~~~~~~~~-~-~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~ 603 (1084)
|-.||.++|+.+.+.. + ...+++|+-+ |....+..... +--.+++|-|.|+.|++... ...|.+|..+ |-
T Consensus 217 WRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GL 291 (928)
T PF04762_consen 217 WRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD---GLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GL 291 (928)
T ss_pred ECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC---CccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-Cc
Confidence 9999999998876333 3 5789999965 66554444322 44567899999999998653 4556677653 43
Q ss_pred EEEEEcCC--CCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeE
Q 001403 604 LLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 681 (1084)
Q Consensus 604 ~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~ 681 (1084)
.-..+... .....|..+.|++|+..||+...|. |.+|...+..-.-.... .+.
T Consensus 292 rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei--------~~~---------------- 346 (928)
T PF04762_consen 292 RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEI--------RFS---------------- 346 (928)
T ss_pred EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEE--------Ecc----------------
Confidence 33333332 2334589999999999999988665 99998876533221110 000
Q ss_pred ecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCC-CeEEEeecCCceEEeeccCCcc
Q 001403 682 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDL 760 (1084)
Q Consensus 682 ~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~vw~~~~~~~ 760 (1084)
....+..+.|+|.. ..|...+.+|.+..+++.
T Consensus 347 -------------------------------------------~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~---- 379 (928)
T PF04762_consen 347 -------------------------------------------SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA---- 379 (928)
T ss_pred -------------------------------------------CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE----
Confidence 01112225555533 335555555666665532
Q ss_pred CcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC-CCCEEEEEeCCeEEEEEcCCcee-----EEEEcCC
Q 001403 761 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKT-----ILTIMPP 834 (1084)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~~~sdg~i~vwd~~~~~~-----~~~~~~~ 834 (1084)
|++..+. ..+| |...+++.++.++.+-.+...-. ...+. .
T Consensus 380 --------------~~v~~s~-------------------~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~ 425 (928)
T PF04762_consen 380 --------------WDVSRSP-------------------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-L 425 (928)
T ss_pred --------------EEEEecC-------------------CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-C
Confidence 2222111 0112 22234444455677766653321 12222 3
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee--------eeeec----------ccccCEEEEEEcCCCCEEEEE
Q 001403 835 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--------ISKLE----------GHSKRVTGLVFSDALNILVSS 896 (1084)
Q Consensus 835 ~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~--------~~~l~----------~h~~~V~~l~~spd~~~l~s~ 896 (1084)
...|.+++|++ ++..+|+-..||.|.+|....... ...+. .-...+..++|..+...++..
T Consensus 426 ~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (928)
T PF04762_consen 426 PSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLS 504 (928)
T ss_pred CCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEE
Confidence 46799999999 676789999999999998544221 11111 123457888998888777766
Q ss_pred eCC---CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeecCCCCC
Q 001403 897 GGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVP 972 (1084)
Q Consensus 897 s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~ 972 (1084)
..+ ..+.++++...+.. ..+....... +.+..+...++...++. ..+|.+...+..........++. ..+
T Consensus 505 ~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~-~c~ 578 (928)
T PF04762_consen 505 DSDSNQSKIVLVDIDDSENS--ASVESSTEVD---GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ-PCP 578 (928)
T ss_pred ecCcccceEEEEEeccCCCc--eeEEEEeccC---ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC-CCc
Confidence 654 67888888543211 1111111111 13455555555553444 67888887666543322211211 222
Q ss_pred EEEEEEccCCC---EEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEE
Q 001403 973 ISQATFSCDCR---MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1049 (1084)
Q Consensus 973 v~~l~fs~dg~---~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~v 1049 (1084)
-..++...+.. .++.-+..|.+++ .+..++ ..+.+ ++.+ +.+|+.......+++
T Consensus 579 ~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la--------------~~~tS--F~v~---~~~Ll~TT~~h~l~f 635 (928)
T PF04762_consen 579 WMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA--------------SNCTS--FAVT---DSFLLFTTTQHTLKF 635 (928)
T ss_pred EEEEEEECCccceeEEEEECCCCEEEE----CCEEEe--------------cCCce--EEEE---cCEEEEEecCceEEE
Confidence 23333333333 3443334444443 333331 11333 3444 468888888899999
Q ss_pred EcCC
Q 001403 1050 IEPN 1053 (1084)
Q Consensus 1050 w~~~ 1053 (1084)
..+.
T Consensus 636 v~L~ 639 (928)
T PF04762_consen 636 VHLN 639 (928)
T ss_pred EECc
Confidence 9997
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.7e-13 Score=150.53 Aligned_cols=237 Identities=14% Similarity=0.123 Sum_probs=157.5
Q ss_pred ccCCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEc
Q 001403 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 397 (1084)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fs 397 (1084)
++.+......+.+..+.+.+.+.+|||||+.||..+++ .|. ..+.+|++.++.... +......+..++||
T Consensus 182 ~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~--~g~----~~i~i~dl~~G~~~~----l~~~~~~~~~~~~S 251 (429)
T PRK03629 182 RVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFE--SGR----SALVIQTLANGAVRQ----VASFPRHNGAPAFS 251 (429)
T ss_pred EEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEec--CCC----cEEEEEECCCCCeEE----ccCCCCCcCCeEEC
Confidence 34444455556667777789999999999999986543 222 679999998764322 11223345578999
Q ss_pred CCCCEEEEE-eCCC--EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC-CCc--EEEEECCCCceee
Q 001403 398 PDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKT--IKVWDAVTGSRTY 471 (1084)
Q Consensus 398 pdg~~las~-~~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-d~~--i~vwd~~~g~~~~ 471 (1084)
|||+.|+.. +.+| .|.+||+++++.. .+..+...+....|+|||+ .|+..+. ++. |.++|+.++.. .
T Consensus 252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d~~~g~~-~ 324 (429)
T PRK03629 252 PDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVNINGGAP-Q 324 (429)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEEECCCCCe-E
Confidence 999999876 3344 5899999887543 3444455678899999999 4554443 344 55557766654 3
Q ss_pred EeccCCCcEEEEeecccCCCcEEEEEecC---CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCee
Q 001403 472 SFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 548 (1084)
Q Consensus 472 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 548 (1084)
.+..+........|+ +||++++..+.+ ..|.+||++++.... +... .......|+|||+.|+..+.++. ...
T Consensus 325 ~lt~~~~~~~~~~~S--pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~-~~~ 399 (429)
T PRK03629 325 RITWEGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGM-GSV 399 (429)
T ss_pred EeecCCCCccCEEEC--CCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCC-ceE
Confidence 444344445566774 577788776543 358888988765433 2222 23346789999999999886433 456
Q ss_pred EEEecCCCceEeeeeeccccccCceEEEEEcC
Q 001403 549 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 580 (1084)
Q Consensus 549 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~ 580 (1084)
+.++++. |.....+.++. +.+...+|+|
T Consensus 400 l~~~~~~-G~~~~~l~~~~---~~~~~p~Wsp 427 (429)
T PRK03629 400 LNLVSTD-GRFKARLPATD---GQVKFPAWSP 427 (429)
T ss_pred EEEEECC-CCCeEECccCC---CCcCCcccCC
Confidence 8888884 55556666665 6777888887
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-12 Score=146.82 Aligned_cols=249 Identities=16% Similarity=0.194 Sum_probs=179.6
Q ss_pred CCceEEEEcCCC-ceeeeecccccCccccccceEEEEEcCCcccc--ce-eeeecCCCCCeEEEEEcCCC--CEEEEEeC
Q 001403 335 SSPMSMDFHPVQ-HTLLLGLWDVNSGQKLFIRNFKVWDIGACSML--FK-TALVRDPGVSVNRVVWSPDG--SLLGVAYS 408 (1084)
Q Consensus 335 ~~V~~v~~spdg-~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~--~~-~~~~~~h~~~V~~v~fspdg--~~las~~~ 408 (1084)
.+|.|+.|+|.. .+||.|.++ |.|.+||+...... .. ......|..+|+.+.|-.+- .-+++++.
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~---------GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss 313 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYN---------GQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS 313 (555)
T ss_pred CceeEEEeccCCcceEEeeccC---------ceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec
Confidence 499999999954 666667777 99999999876552 11 12345689999999997754 45999999
Q ss_pred CCEEEEEEccCCccccceeeee---------cccccEeEEEeecCCCcEEEEEEeCCCcEEEEE---CCCCc-----eee
Q 001403 409 KHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD---AVTGS-----RTY 471 (1084)
Q Consensus 409 dg~v~iwd~~~~~~~~~~~~l~---------~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd---~~~g~-----~~~ 471 (1084)
||.|..|+++.-........+. .-...+++++|.+.... .++.|+++|.|.-=+ ...+. .+.
T Consensus 314 DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~ 392 (555)
T KOG1587|consen 314 DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHS 392 (555)
T ss_pred CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCCcccccccccccc
Confidence 9999999887543311111111 11236899999987776 688899999887733 22222 133
Q ss_pred EeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECC-CCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEE
Q 001403 472 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 550 (1084)
Q Consensus 472 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 550 (1084)
.+..|.++|+++.++|-.. ..+.+++ |-++++|.-. ...+...+..+...+++++|||-...++++. +++|.+.
T Consensus 393 ~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~---d~~G~l~ 467 (555)
T KOG1587|consen 393 TFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV---DGDGNLD 467 (555)
T ss_pred cccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE---cCCCcee
Confidence 5567899999999876543 3444444 9999999888 5666777777777899999999887776665 3578899
Q ss_pred EecCCCceE--eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 001403 551 EWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 601 (1084)
Q Consensus 551 ~wd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 601 (1084)
+||+..... +....-.. .....+.|+++|+.+++|...|++.+|++..
T Consensus 468 iWDLl~~~~~Pv~s~~~~~---~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 468 IWDLLQDDEEPVLSQKVCS---PALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred hhhhhccccCCcccccccc---cccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 999875433 22222222 5667888999999999999999999999864
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-11 Score=131.38 Aligned_cols=286 Identities=12% Similarity=0.123 Sum_probs=189.6
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE-----eCC-
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-----YSK- 409 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~-----~~d- 409 (1084)
.....++|++|+++|... ...++|++..+....... ....+.++.|||-|.+|.+- ..+
T Consensus 36 ~~~v~~~S~~G~lfA~~~----------~~~v~i~~~~~~~~~lt~-----~~~~~~~L~fSP~g~yL~T~e~~~i~~~~ 100 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSD----------NQVVKVFEIATLKVVLCV-----ELKKTYDLLFSPKGNYLLTWEPWAIYGPK 100 (566)
T ss_pred cceeEEEcCCCcEEEEEc----------CCeEEEEEccCCcEEEEe-----ccceeeeeeecccccccccccccccccCC
Confidence 467889999999999952 267899999877533322 22388999999999999863 122
Q ss_pred ----CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEee
Q 001403 410 ----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 485 (1084)
Q Consensus 410 ----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~ 485 (1084)
-.+.+|+++++.....+ ..+ .+.. ++..|+.|.. ++.--..+.+.+|++..-+.+ .-.-|...|..+.+
T Consensus 101 ~~~~pn~~v~~vet~~~~s~~-q~k-~Q~~-W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~-~~kl~~~~i~~f~l 173 (566)
T KOG2315|consen 101 NASNPNVLVYNVETGVQRSQI-QKK-MQNG-WVPQFSIDES---LAARLVSNEVQFYDLGSFKTI-QHKLSVSGITMLSL 173 (566)
T ss_pred CCCCCceeeeeeccceehhhe-ehh-hhcC-cccccccchh---hhhhhhcceEEEEecCCccce-eeeeeccceeeEEe
Confidence 24789999995332211 111 2222 5899999987 343334567999998763322 22336778888899
Q ss_pred cccCCCcEEEE-----EecCCeEEEEECCCCCceEeec---CCCCeEEEEEEcCCCCEEEEEe-eCC-------CCCeeE
Q 001403 486 HAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCG-TSK-------EGESFL 549 (1084)
Q Consensus 486 ~~~~~~~~l~s-----~s~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~d~~~l~~~~-~~~-------~~~~~i 549 (1084)
+|.+....+++ .+.-+.|++|.+.......... .-...-..+.|++-|+-|++.. .+- -|+..+
T Consensus 174 Spgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~L 253 (566)
T KOG2315|consen 174 SPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTL 253 (566)
T ss_pred cCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceE
Confidence 88766566665 3555679999876322211111 0111234577888777544332 211 245678
Q ss_pred EEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEE--EECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC
Q 001403 550 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 627 (1084)
Q Consensus 550 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 627 (1084)
++.++........+.. .++|.++.|+|+++.+++ |-.--.+.|+|++ +..+..+... .-+++-|+|.|+
T Consensus 254 yll~t~g~s~~V~L~k----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~eg----pRN~~~fnp~g~ 324 (566)
T KOG2315|consen 254 YLLATQGESVSVPLLK----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEG----PRNTAFFNPHGN 324 (566)
T ss_pred EEEEecCceEEEecCC----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCC----CccceEECCCCC
Confidence 8888874444333332 379999999999988776 5577889999985 5666655422 347899999999
Q ss_pred EEEEEECC---CeEEEEEcCCCCeeeec
Q 001403 628 LLAVIANE---NRIKILETPESNSVDAA 652 (1084)
Q Consensus 628 ~l~~~~~d---g~i~iwd~~~~~~~~~~ 652 (1084)
+++.++-+ |.|.|||..+.+++..+
T Consensus 325 ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 325 IILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred EEEEeecCCCCCceEEEeccchhhcccc
Confidence 99988874 88999999987666544
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-12 Score=136.75 Aligned_cols=283 Identities=14% Similarity=0.208 Sum_probs=208.1
Q ss_pred cCCCCceEEEEcCCCceeee-ecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 001403 332 EGSSSPMSMDFHPVQHTLLL-GLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 410 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las-~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg 410 (1084)
+|...-+.+..||||+|+.+ |.+- ..|++||+......+++.+ ....|...-.|.|-..++.-..|.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YK---------P~ikvydlanLSLKFERhl---Dae~V~feiLsDD~SK~v~L~~DR 116 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYK---------PQIKVYDLANLSLKFERHL---DAEVVDFEILSDDYSKSVFLQNDR 116 (703)
T ss_pred CCccccceeEecCCCcEEEEecccC---------CceEEEEcccceeeeeecc---cccceeEEEeccchhhheEeecCc
Confidence 45557788999999999876 5444 8999999999888877632 345677777888888888888999
Q ss_pred EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCC
Q 001403 411 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 490 (1084)
Q Consensus 411 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~ 490 (1084)
+|.+...-+- ... ++ -...-..++++.-... |+.++....|.-.+++.|+.+..+....+.++++.+++.
T Consensus 117 ~IefHak~G~-hy~----~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~-- 186 (703)
T KOG2321|consen 117 TIEFHAKYGR-HYR----TR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE-- 186 (703)
T ss_pred eeeehhhcCe-eee----ee-cCcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceeeeecCc--
Confidence 8877653321 110 11 0112234555544443 444444556888999999999999888899999988654
Q ss_pred CcEEEEEecCCeEEEEECCCCCceEeecCC------C-----CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE
Q 001403 491 IHFIFSISVDGKIKAWLYDSLGARVDYDAP------G-----LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 559 (1084)
Q Consensus 491 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~-----~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~ 559 (1084)
..+|++|+.+|.|..||.+.......+... . ..|+++.|+.+|-.+++|+. .|.+.+||+++.++
T Consensus 187 hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 187 HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIYDLRASKP 262 (703)
T ss_pred cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEEEcccCCc
Confidence 368999999999999999876654433221 1 25899999999999999986 66799999999887
Q ss_pred eeeeeccccccCceEEEEEcCC--CCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCe
Q 001403 560 KRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 637 (1084)
Q Consensus 560 ~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 637 (1084)
+..-.... .-+|..+.|.+. ++.+++ .....++|||-.+|+....+.... .++.+|+-|++.+++++-.++.
T Consensus 263 l~~kdh~~--e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p~sGm~f~Ane~~~ 336 (703)
T KOG2321|consen 263 LLVKDHGY--ELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTS---DLNDFCFVPGSGMFFTANESSK 336 (703)
T ss_pred eeecccCC--ccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccC---CcCceeeecCCceEEEecCCCc
Confidence 65433222 367888999766 334444 355789999999999998886543 4889999999999999999888
Q ss_pred EEEEEcCCC
Q 001403 638 IKILETPES 646 (1084)
Q Consensus 638 i~iwd~~~~ 646 (1084)
+..|-++..
T Consensus 337 m~~yyiP~L 345 (703)
T KOG2321|consen 337 MHTYYIPSL 345 (703)
T ss_pred ceeEEcccc
Confidence 887766643
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.8e-12 Score=131.16 Aligned_cols=353 Identities=13% Similarity=0.098 Sum_probs=227.0
Q ss_pred CCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC--
Q 001403 333 GSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH-- 410 (1084)
Q Consensus 333 h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg-- 410 (1084)
-.-++..++|||.|++|++.- ...|.+|+-......... ....|..+.|||.++||.+-+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~----------~~~V~~~~g~~~~~l~~~-----~~~~V~~~~fSP~~kYL~tw~~~pi~ 95 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEH----------AAGVECWGGPSKAKLVRF-----RHPDVKYLDFSPNEKYLVTWSREPII 95 (561)
T ss_pred cCcchhheeecCcchheehhh----------ccceEEccccchhheeee-----ecCCceecccCcccceeeeeccCCcc
Confidence 344788999999999999831 156888888766544332 235899999999999999865433
Q ss_pred -------------EEEEEEccCCccccceeeeeccccc--Ee-EEEeecCCCcEEEEEEeCCCcEEEEECCCCcee-eEe
Q 001403 411 -------------IVQLYAYHGGSDARQQLEIDAHVGN--VN-DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSF 473 (1084)
Q Consensus 411 -------------~v~iwd~~~~~~~~~~~~l~~h~~~--V~-~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~-~~~ 473 (1084)
.+.+||..+|..+. .+.+...+ .+ -+.|+-+.+ +++-- ....+.|+++ ++... ..+
T Consensus 96 ~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~-t~n~~~~p~ 168 (561)
T COG5354 96 EPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEI-TDNIEEHPF 168 (561)
T ss_pred ChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEec-CCccccCch
Confidence 49999999997655 34444333 33 678999888 34333 2446999997 44322 112
Q ss_pred ccC-CCcEEEEeecccCCCcEEEE-----EecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCC----
Q 001403 474 EGH-GAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK---- 543 (1084)
Q Consensus 474 ~~h-~~~v~~~~~~~~~~~~~l~s-----~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~---- 543 (1084)
..- ...|....++|.+++..|+. .+.++++++|.+.....+.....-...-..+.|.+.|+++++-....
T Consensus 169 ~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksn 248 (561)
T COG5354 169 KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSN 248 (561)
T ss_pred hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecc
Confidence 111 24577778877766666554 45678899999886555444333333334678888898876543211
Q ss_pred ---CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEE--ECCCcEEEEECCCCeEEEEEcCCCCCCCcc
Q 001403 544 ---EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENP 618 (1084)
Q Consensus 544 ---~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 618 (1084)
-|+..++++++....+ ....... ++|...+|.|.++.+++. ..+-.+.++|++.. ....+.... =+
T Consensus 249 KsyfgesnLyl~~~~e~~i-~V~~~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~----rN 319 (561)
T COG5354 249 KSYFGESNLYLLRITERSI-PVEKDLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQK----RN 319 (561)
T ss_pred cceeccceEEEEeeccccc-ceecccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcc----cc
Confidence 1345688888773332 2222334 799999999999888764 57889999999765 444443221 35
Q ss_pred eEEEecCCCEEEEEECC---CeEEEEEcCCCCeee-eccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccc
Q 001403 619 RICFNKNGTLLAVIANE---NRIKILETPESNSVD-AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 694 (1084)
Q Consensus 619 ~v~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 694 (1084)
.+.|+|.++++++++-| |.+.+||....-.+. .+.+ ....-+.|+|++....+....- .
T Consensus 320 T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~--~n~s~~~wspd~qF~~~~~ts~----------k----- 382 (561)
T COG5354 320 TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG--LNTSYCDWSPDGQFYDTDTTSE----------K----- 382 (561)
T ss_pred cccccCcccEEEEecCCccccceEEeccCCceEEEEEeec--CCceEeeccCCceEEEecCCCc----------c-----
Confidence 78999999999997765 789999987653332 2322 2233345665554442221110 0
Q ss_pred eecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCC
Q 001403 695 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 748 (1084)
Q Consensus 695 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 748 (1084)
--.|+.+.+|++..... ...+.+.|.|.|++..+.+...
T Consensus 383 -~~~Dn~i~l~~v~g~~~--------------fel~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 383 -LRVDNSIKLWDVYGAKV--------------FELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred -cccCcceEEEEecCchh--------------hhhhhccccCCcccceeeccCC
Confidence 12467889999763221 2455677888888777776653
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-09 Score=112.43 Aligned_cols=143 Identities=13% Similarity=0.138 Sum_probs=113.3
Q ss_pred CCCCCccEEEecCCCCEEEEEe-CC-eEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce
Q 001403 792 NSQEAVPCFALSKNDAYLFSAS-GG-VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 869 (1084)
Q Consensus 792 ~~~~~v~~l~~s~dg~~l~~~s-dg-~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~ 869 (1084)
++...|.-..+..+++-++.|. || .+-++|..+++.. .+...-+.|.++..++ +|++++++.....+.+.|+++|.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCC
Confidence 3566677777777777777776 55 8999999887654 4445667899999999 99999999999999999999998
Q ss_pred eeeeecccccCEEEEEEcCCCCEEEEEeCCC----cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE
Q 001403 870 VISKLEGHSKRVTGLVFSDALNILVSSGGDA----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 945 (1084)
Q Consensus 870 ~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 945 (1084)
....-+...+-|+.++|+|+++++|-+--+| .|+++|+.+++... +.+..++ -.+-+|.|||++|.-
T Consensus 435 v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~---vTT~ta~------DfsPaFD~d~ryLYf 505 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD---VTTPTAY------DFSPAFDPDGRYLYF 505 (668)
T ss_pred eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE---ecCCccc------ccCcccCCCCcEEEE
Confidence 7655555678899999999999999887665 58999999976332 4444443 346789999998865
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-10 Score=132.77 Aligned_cols=194 Identities=16% Similarity=0.201 Sum_probs=150.4
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCC-----CeEEEEEcCCCCEEEEEeCCC
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPDGSLLGVAYSKH 410 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~-----~V~~v~fspdg~~las~~~dg 410 (1084)
.|....+.-+.+.++....+ ..+.|||........+.. +.. ...-+.++++.-++++|+.-+
T Consensus 89 wi~g~~l~~e~k~i~l~~~~---------ns~~i~d~~~~~~~~~i~----~~er~~l~~~~~~g~s~~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSR---------NSLLIRDSKNSSVLSKIQ----SDERCTLYSSLIIGDSAEELYIASGSVFG 155 (967)
T ss_pred cccccchhhhcceEEEEEcC---------ceEEEEecccCceehhcC----CCceEEEEeEEEEeccCcEEEEEeccccc
Confidence 33445566666777776555 889999987665544321 222 222345688888999999999
Q ss_pred EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceee-EeccCCCcEEEEeecccC
Q 001403 411 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPHAKE 489 (1084)
Q Consensus 411 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~-~~~~h~~~v~~~~~~~~~ 489 (1084)
.|.+|+....+... .+.+|.+.|.++.|+.||+ ++++.|+|.++++|++++++... +.-+|...|..++|.+.
T Consensus 156 ~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n- 229 (967)
T KOG0974|consen 156 EIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN- 229 (967)
T ss_pred cEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-
Confidence 99999998332111 5789999999999999999 89999999999999999998876 77789999999999653
Q ss_pred CCcEEEEEecCCeEEEEECCCCCceEeecCC-CCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC
Q 001403 490 NIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 556 (1084)
Q Consensus 490 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~ 556 (1084)
.+++++.|-+.++|+.+..... .+..| ...+..++..++...+++++. |+.+++||+..
T Consensus 230 ---~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 230 ---RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNG 289 (967)
T ss_pred ---eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhc
Confidence 8999999999999977654444 44444 447999999999888888886 66799999764
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.2e-12 Score=144.47 Aligned_cols=237 Identities=13% Similarity=0.076 Sum_probs=161.4
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeC---CCEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~---dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
..|.+||....... .+..|...+.+.+|||||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|
T Consensus 182 ~~l~~~d~dg~~~~----~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----~l~~~~g~~~~~~~ 253 (435)
T PRK05137 182 KRLAIMDQDGANVR----YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE----LVGNFPGMTFAPRF 253 (435)
T ss_pred eEEEEECCCCCCcE----EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----EeecCCCcccCcEE
Confidence 67888888654332 14457789999999999999998763 468999999988642 34566677889999
Q ss_pred ecCCCcEEEEEEeCCCc--EEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEec-CC--eEEEEECCCCCceEe
Q 001403 442 SAPCKQISVITCGDDKT--IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVD 516 (1084)
Q Consensus 442 s~d~~~l~l~s~~~d~~--i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~ 516 (1084)
+|||+. ++++.+.++. |.+||++++.. ..+..+........|+ +||+.++..+. +| .|.++|++......
T Consensus 254 SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s--pDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~- 328 (435)
T PRK05137 254 SPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS--PDGSQIVFESDRSGSPQLYVMNADGSNPRR- 328 (435)
T ss_pred CCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc--CCCCEEEEEECCCCCCeEEEEECCCCCeEE-
Confidence 999995 3445555554 77789887765 4566666666677885 46777776663 34 57777876554433
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC-----
Q 001403 517 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----- 591 (1084)
Q Consensus 517 ~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----- 591 (1084)
+......+....|+|||+.|+..... .+...|.+||+.++.. +.+.. . ..+....|+|||+.|+..+.+
T Consensus 329 lt~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~-~---~~~~~p~~spDG~~i~~~~~~~~~~~ 402 (435)
T PRK05137 329 ISFGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSGE-RILTS-G---FLVEGPTWAPNGRVIMFFRQTPGSGG 402 (435)
T ss_pred eecCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCce-EeccC-C---CCCCCCeECCCCCEEEEEEccCCCCC
Confidence 33334456678899999999987643 2356799999866543 33322 1 245678999999998876543
Q ss_pred -CcEEEEECCCCeEEEEEcCCCCCCCcceEEEec
Q 001403 592 -HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 624 (1084)
Q Consensus 592 -g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 624 (1084)
..++++|+..+.. ..+...+ .+...+|+|
T Consensus 403 ~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 403 APKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred cceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 3578888876554 3443222 255667776
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.4e-12 Score=145.75 Aligned_cols=238 Identities=16% Similarity=0.131 Sum_probs=157.5
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeC---CCEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~---dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
..|.+||........ +..+...+.+.+|||||+.|+..+. +..|.+||+.+++.. .+..+.+...+.+|
T Consensus 184 ~~l~i~D~~g~~~~~----lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~----~l~~~~g~~~~~~~ 255 (433)
T PRK04922 184 YALQVADSDGYNPQT----ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE----LVASFRGINGAPSF 255 (433)
T ss_pred EEEEEECCCCCCceE----eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE----EeccCCCCccCceE
Confidence 678899986433221 3446778999999999999998864 346999999887642 23344455668899
Q ss_pred ecCCCcEEEEEEeCCC--cEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEec-CCe--EEEEECCCCCceEe
Q 001403 442 SAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVD 516 (1084)
Q Consensus 442 s~d~~~l~l~s~~~d~--~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~ 516 (1084)
+|||+. ++++.+.++ .|.+||+.+++. ..+..+.......+|+ +||+.++..+. +|. |.++++.+++...
T Consensus 256 SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s--pDG~~l~f~sd~~g~~~iy~~dl~~g~~~~- 330 (433)
T PRK04922 256 SPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA--PDGKSIYFTSDRGGRPQIYRVAASGGSAER- 330 (433)
T ss_pred CCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC--CCCCEEEEEECCCCCceEEEEECCCCCeEE-
Confidence 999995 334445555 599999988875 4455565555667884 46777776654 455 5555665544322
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC---Cc
Q 001403 517 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HV 593 (1084)
Q Consensus 517 ~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~ 593 (1084)
+..........+|+|||+.++....+ .+...|.+||+.+++......+ .......|+|||++++..+.+ +.
T Consensus 331 lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~~Lt~~-----~~~~~p~~spdG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 331 LTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVRTLTPG-----SLDESPSFAPNGSMVLYATREGGRGV 404 (433)
T ss_pred eecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeEECCCC-----CCCCCceECCCCCEEEEEEecCCceE
Confidence 22233344578999999999887642 3355799999988876533222 123456899999998886653 46
Q ss_pred EEEEECCCCeEEEEEcCCCCCCCcceEEEec
Q 001403 594 IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 624 (1084)
Q Consensus 594 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 624 (1084)
|++++... .....+..+. ..+...+|+|
T Consensus 405 L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 405 LAAVSTDG-RVRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred EEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence 88888854 3444444322 2356667775
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-12 Score=149.20 Aligned_cols=237 Identities=14% Similarity=0.129 Sum_probs=157.9
Q ss_pred ccCCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEc
Q 001403 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 397 (1084)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fs 397 (1084)
++.+......+.+..|...+.+.+|||||++||+.+++ .+ ...|.+||+.++.... +..+.....+++||
T Consensus 187 ~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~--~~----~~~l~~~dl~~g~~~~----l~~~~g~~~~~~~S 256 (433)
T PRK04922 187 QVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFE--RG----RSAIYVQDLATGQREL----VASFRGINGAPSFS 256 (433)
T ss_pred EEECCCCCCceEeecCCCccccccCCCCCCEEEEEecC--CC----CcEEEEEECCCCCEEE----eccCCCCccCceEC
Confidence 33444555666777787889999999999999997654 12 2679999998765432 22344455688999
Q ss_pred CCCCEEEEE-eCCC--EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEe-CCCc--EEEEECCCCceee
Q 001403 398 PDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKT--IKVWDAVTGSRTY 471 (1084)
Q Consensus 398 pdg~~las~-~~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~-~d~~--i~vwd~~~g~~~~ 471 (1084)
|||+.|+.. +.+| .|.+||+.+++.. .+..+.......+|+|||+ .++..+ .++. |.++|+.+++..
T Consensus 257 pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~iy~~dl~~g~~~- 329 (433)
T PRK04922 257 PDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQIYRVAASGGSAE- 329 (433)
T ss_pred CCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCCeE-
Confidence 999988754 4444 5999999987632 3445655567889999999 455444 3444 677787777643
Q ss_pred EeccCCCcEEEEeecccCCCcEEEEEecCC---eEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCee
Q 001403 472 SFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 548 (1084)
Q Consensus 472 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 548 (1084)
.+..+.......+|+ ++|+.++..+.++ .|.+||+.+++.. .+.. ........|+|||++++..+.. .+...
T Consensus 330 ~lt~~g~~~~~~~~S--pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~~~~~p~~spdG~~i~~~s~~-~g~~~ 404 (433)
T PRK04922 330 RLTFQGNYNARASVS--PDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-GSLDESPSFAPNGSMVLYATRE-GGRGV 404 (433)
T ss_pred EeecCCCCccCEEEC--CCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC-CCCCCCceECCCCCEEEEEEec-CCceE
Confidence 333333344456774 4677887665443 5899998776654 3322 2234567899999999887754 34667
Q ss_pred EEEecCCCceEeeeeeccccccCceEEEEEcC
Q 001403 549 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 580 (1084)
Q Consensus 549 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~ 580 (1084)
|+++++.. .....+..+. +.+...+|+|
T Consensus 405 L~~~~~~g-~~~~~l~~~~---g~~~~p~wsp 432 (433)
T PRK04922 405 LAAVSTDG-RVRQRLVSAD---GEVREPAWSP 432 (433)
T ss_pred EEEEECCC-CceEEcccCC---CCCCCCccCC
Confidence 99999854 4445554433 4566667766
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.9e-14 Score=143.76 Aligned_cols=279 Identities=18% Similarity=0.169 Sum_probs=214.6
Q ss_pred cccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 001403 330 LIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 409 (1084)
Q Consensus 330 l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d 409 (1084)
|.--......+.++.+|++|+.|..- |.+.-+|+.+....++.. -...|.++.|-.+.+++|++-..
T Consensus 125 L~l~eFGPY~~~ytrnGrhlllgGrK---------GHlAa~Dw~t~~L~~Ei~----v~Etv~Dv~~LHneq~~AVAQK~ 191 (545)
T KOG1272|consen 125 LSLPEFGPYHLDYTRNGRHLLLGGRK---------GHLAAFDWVTKKLHFEIN----VMETVRDVTFLHNEQFFAVAQKK 191 (545)
T ss_pred ccccccCCeeeeecCCccEEEecCCc---------cceeeeecccceeeeeee----hhhhhhhhhhhcchHHHHhhhhc
Confidence 33334478899999999999997544 999999999988777654 23578999999999999988654
Q ss_pred CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccC
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 489 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~ 489 (1084)
.+.|||-..- .+. .++.| ..|..+.|-|--- +|++++..|.++.-|+.+|+.+..+..-.+.+..++-+|-+
T Consensus 192 -y~yvYD~~Gt-ElH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N 263 (545)
T KOG1272|consen 192 -YVYVYDNNGT-ELH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN 263 (545)
T ss_pred -eEEEecCCCc-EEe---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc
Confidence 5999997653 233 45555 3589999999866 89999999999999999999999998888888888876543
Q ss_pred CCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccc
Q 001403 490 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569 (1084)
Q Consensus 490 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 569 (1084)
..+-+|...|+|.+|.....+++..+..|.++|.++++.++|+++++.+. |..+.|||+++-..+.++...
T Consensus 264 --aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~tp--- 334 (545)
T KOG1272|consen 264 --AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRTP--- 334 (545)
T ss_pred --ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeecC---
Confidence 58888999999999999999999999999999999999999999999987 666999999987766666552
Q ss_pred cCceEEEEEcCCCCEEEEEECCCcEEEEE-CCCCe--EEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEE
Q 001403 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 641 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd-~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 641 (1084)
.+...+++|..| +++.+....+.||. ...+. .-..+-.|.-...|..+.|.|-...|-+|...|.-.+.
T Consensus 335 -~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 335 -HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred -CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 356777887654 45555566899993 33322 11111122222368899999977777777666544443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-10 Score=124.79 Aligned_cols=526 Identities=10% Similarity=0.108 Sum_probs=318.8
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccc------------cceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSM------------LFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~------------~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
...|++|.....|+|.|..| |.++|-.+.+... ..-...+.||...|..+.|+.+.+.|
T Consensus 16 kL~c~~WNke~gyIAcgG~d---------GlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL 86 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGAD---------GLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL 86 (1189)
T ss_pred eEEEEEEcccCCeEEecccc---------ceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccc
Confidence 56799999999999999877 8899988764321 11223588999999999999999999
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee-eEeccCCCcEEE
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYS 482 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~-~~~~~h~~~v~~ 482 (1084)
-+...+|.|.||-+-.|+-.... .-....+.|.+++|+.||. .+.....||.|.|=.++..+.- +.+++ .....
T Consensus 87 TtSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~h 161 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAH 161 (1189)
T ss_pred cccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcch--heccc
Confidence 99999999999999888654433 2234566799999999999 6777788998877665433221 12222 11234
Q ss_pred EeecccCCCcEEEEEecCCeEEEEECCCCCc-------eE----eecCCCCeEEEEEEc--------CCCCEEEEEeeCC
Q 001403 483 LCPHAKENIHFIFSISVDGKIKAWLYDSLGA-------RV----DYDAPGLGCTRMAYS--------ANGRRLFSCGTSK 543 (1084)
Q Consensus 483 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-------~~----~~~~~~~~i~~~~~s--------~d~~~l~~~~~~~ 543 (1084)
+.| ++|...++.+-.+|.+.++|....-. .. .+......+..+.|. ||...+++|..
T Consensus 162 v~w--s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~-- 237 (1189)
T KOG2041|consen 162 VLW--SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA-- 237 (1189)
T ss_pred eee--cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc--
Confidence 566 44656777778889999998653211 00 111122234444442 57788888875
Q ss_pred CCCeeEEEecCCC-ceEeeeeeccccccCceEEEEEcCCCCEEEEEECC---------CcEEEEECCCCeEEEEEcCCCC
Q 001403 544 EGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWDMNKVQLLTTIDAGGG 613 (1084)
Q Consensus 544 ~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~ 613 (1084)
+|.+.+..-.+ .+++..-.+ -.+..+.|+++|..+++++.+ +.|.+|.. -|+.+.++...+.
T Consensus 238 --nGr~QiMR~eND~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~ 309 (1189)
T KOG2041|consen 238 --NGRMQIMRSENDPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS 309 (1189)
T ss_pred --CceehhhhhcCCCCCeEEecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc
Confidence 55566654332 233322222 357888999999999998743 24555543 5677777776654
Q ss_pred CCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEe-cCCCCCCCCc
Q 001403 614 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV-NEDPKEDVKP 692 (1084)
Q Consensus 614 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~-~~~~s~~~~~ 692 (1084)
.|++++|-..|-.++.+- |+.|.+=++...-....+. . .+.+ ... ++.
T Consensus 310 --~It~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e---~---------------------TvVy~y~~--~e~-- 358 (1189)
T KOG2041|consen 310 --CITGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIE---E---------------------TVVYVYQK--EEL-- 358 (1189)
T ss_pred --eeeeeEEcCCceEEEEEe-cceEEEEeecccceEEEee---e---------------------EEEEEEcc--CCC--
Confidence 588999988887777664 5677776655331111110 0 0000 000 000
Q ss_pred cceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCC
Q 001403 693 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP 772 (1084)
Q Consensus 693 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 772 (1084)
..-.|.+||..+.+.... ......++++..+.-.|+.-..+|.+.-++.-... -
T Consensus 359 -----p~y~i~Fwdtk~nek~vK---------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~------------~ 412 (1189)
T KOG2041|consen 359 -----PQYGIMFWDTKTNEKTVK---------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLENR------------S 412 (1189)
T ss_pred -----cceEEEEEecccChhhhh---------hhcceeehheecccEEEEeccccCCCcchhhhhcc------------c
Confidence 001245566543222111 11234456666666555555556655443211000 0
Q ss_pred eeecCCCCCccccccCcCCC---CCCCccEEEecCCCCEEEEEeCCeEEEEEcCCcee----------------------
Q 001403 773 RLYQPRHGPQFMVNDTTDSN---SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---------------------- 827 (1084)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~---~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~---------------------- 827 (1084)
++|-.. ..+.. +.. .-..|.-.-..-++.+++.++...+.+|.....+.
T Consensus 413 ~~~~l~-----LCNSI-GT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ 486 (1189)
T KOG2041|consen 413 RVYFLQ-----LCNSI-GTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPE 486 (1189)
T ss_pred ceEEEe-----eeccc-CCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCcc
Confidence 111000 00000 000 11112222223367788888888888887532110
Q ss_pred ----------EEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEe
Q 001403 828 ----------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 897 (1084)
Q Consensus 828 ----------~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s 897 (1084)
..++.+...+|.+++.+. ++|.++-..|.|.-|.+.+..+..... -...|..+++.-+..++|...
T Consensus 487 ga~d~~l~ys~kt~~G~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId 562 (1189)
T KOG2041|consen 487 GAQDRTLEYSTKTLLGSKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIID 562 (1189)
T ss_pred chhhceeeccceeeccCCCcceeeeecc---eEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhh
Confidence 134556667888888863 689999999999999999877665544 456789999998899999988
Q ss_pred CCCcEEEEeCCCC-ceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCc
Q 001403 898 GDAQIFVWDVDGW-GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL 959 (1084)
Q Consensus 898 ~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~ 959 (1084)
.-|.+.+.|+.-. .......+...+. ..|+.+.|..|+..+.+ -....++|++-.+.
T Consensus 563 ~~gv~tf~dLd~d~~g~ql~~~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrgndp 621 (1189)
T KOG2041|consen 563 LVGVVTFQDLDYDFDGDQLKLIYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRGNDP 621 (1189)
T ss_pred hhceeeeeecccccCcceeeeeehhhh-----hhhhhhhhccCCchHHhhhhhceEEEecCcCc
Confidence 8899999888721 1111111222221 25889999998877666 44556788775443
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-08 Score=121.30 Aligned_cols=577 Identities=11% Similarity=0.118 Sum_probs=305.2
Q ss_pred CCCCceEEEEcCCCceeeeecccccCccccccceEEEE----EcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 001403 333 GSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVW----DIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 408 (1084)
Q Consensus 333 h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iw----d~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~ 408 (1084)
..+.|.++.+-+|..-|+.+..+ |.|.+. +..+..... ...-...|.+++||||+..||....
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~---------Gdi~~~~~~~~~~~~~~E~----VG~vd~GI~a~~WSPD~Ella~vT~ 140 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALAS---------GDIILVREDPDPDEDEIEI----VGSVDSGILAASWSPDEELLALVTG 140 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECC---------ceEEEEEccCCCCCceeEE----EEEEcCcEEEEEECCCcCEEEEEeC
Confidence 34689999999999888877655 778777 443332222 2334579999999999999999999
Q ss_pred CCEEEEEEccCCccccceeeeeccc-----ccEeEEEeecCCCcEEEEEEeCCCcE-E-EEECCCC-ceeeEeccCCCcE
Q 001403 409 KHIVQLYAYHGGSDARQQLEIDAHV-----GNVNDLAFSAPCKQISVITCGDDKTI-K-VWDAVTG-SRTYSFEGHGAPV 480 (1084)
Q Consensus 409 dg~v~iwd~~~~~~~~~~~~l~~h~-----~~V~~l~~s~d~~~l~l~s~~~d~~i-~-vwd~~~g-~~~~~~~~h~~~v 480 (1084)
++++.+..-+ -+.+. +..-+. ..-..+-|-....+ +-|+..+.. + .=|.... .....+. +.+.-
T Consensus 141 ~~~l~~mt~~-fd~i~---E~~l~~~~~~~~~~VsVGWGkKeTQ---F~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~ 212 (928)
T PF04762_consen 141 EGNLLLMTRD-FDPIS---EVPLDSDDFGESKHVSVGWGKKETQ---FHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGR 212 (928)
T ss_pred CCEEEEEecc-ceEEE---EeecCccccCCCceeeeccCcccCc---cCcchhhhhhhhccCCCCCccccCccc-cCCCc
Confidence 9988876422 11111 111110 11112333222211 111110000 0 0110000 0011222 34445
Q ss_pred EEEeecccCCCcEEEEEec---C---CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecC
Q 001403 481 YSLCPHAKENIHFIFSISV---D---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 554 (1084)
Q Consensus 481 ~~~~~~~~~~~~~l~s~s~---d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~ 554 (1084)
..++| .+||.++++.+. . ..+|+|+-+ +......+...+--.+++|-|.|+++|+... ..+...|..|.-
T Consensus 213 ~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfEr 288 (928)
T PF04762_consen 213 VRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFER 288 (928)
T ss_pred eEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEec
Confidence 56677 779999998875 3 469999754 3333333333333457899999999998875 233456777764
Q ss_pred CCceEeeeeeccc-cccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEE--EEEcCCCCCCCcceEEEecC-CCEEE
Q 001403 555 SEGAIKRTYQGLQ-LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKN-GTLLA 630 (1084)
Q Consensus 555 ~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~-~~~l~ 630 (1084)
+|-.-..|.... .....|..+.|++|+..|+..-.|. |.+|-..+.... +.+..... ..+..+.|+|. ...|.
T Consensus 289 -NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~ 365 (928)
T PF04762_consen 289 -NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLH 365 (928)
T ss_pred -CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEE
Confidence 343333333221 1236799999999999999977655 999999887644 33332222 23455999994 55677
Q ss_pred EEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcccccccee-
Q 001403 631 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF- 709 (1084)
Q Consensus 631 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~- 709 (1084)
+.+.+|.+..++..-.. ..++.. .|+..-.+..-+..++.+-.+..
T Consensus 366 v~t~~g~~~~~~~~~~v---------------~~s~~~------------------~~~D~g~vaVIDG~~lllTpf~~a 412 (928)
T PF04762_consen 366 VLTSNGQYEIYDFAWDV---------------SRSPGS------------------SPNDNGTVAVIDGNKLLLTPFRRA 412 (928)
T ss_pred EEecCCcEEEEEEEEEE---------------EecCCC------------------CccCceEEEEEeCCeEEEeccccc
Confidence 77777777766654210 011000 01111111111112233322211
Q ss_pred --ecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCcccccc
Q 001403 710 --ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND 787 (1084)
Q Consensus 710 --~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1084)
+.|.-...+.+ ...|.+++|++++..+++...||.+.+|.+............. ........ ...
T Consensus 413 ~VPPPMs~~~l~~-----~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~-- 479 (928)
T PF04762_consen 413 VVPPPMSSYELEL-----PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKL-----LSSISLDS-MDI-- 479 (928)
T ss_pred CCCchHhceEEcC-----CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcch-----hhhccccc-ccc--
Confidence 12222233332 3589999999999999999999999999876543211000000 00000000 000
Q ss_pred CcCCCCCCCccEEEecCCCCEEEEEeC----CeEEEEEcCCce---eEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeE
Q 001403 788 TTDSNSQEAVPCFALSKNDAYLFSASG----GVISLYIVMTFK---TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI 860 (1084)
Q Consensus 788 ~~~~~~~~~v~~l~~s~dg~~l~~~sd----g~i~vwd~~~~~---~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i 860 (1084)
.........+..++|..+...++.... ..+.+++....+ .........+.+..+...+ +...++.-..+|.+
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v 558 (928)
T PF04762_consen 480 SDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKV 558 (928)
T ss_pred cccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEE
Confidence 000013456778888888877776653 468888874332 2333333345555555555 44456677789999
Q ss_pred EEEEcCCcee-eeeecccccCEEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEE
Q 001403 861 LIYNARSSEV-ISKLEGHSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 936 (1084)
Q Consensus 861 ~iwd~~~~~~-~~~l~~h~~~V~~l~~spd~~---~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 936 (1084)
...+...... +..+..-...+ .+....+.. .++.-+..|.+++ .. ..+. ..++++++
T Consensus 559 ~~~~~~~~~~~~~~fp~~c~~~-~~~~~~~~~~~~~~~GLs~~~~Ly~---n~------~~la---------~~~tSF~v 619 (928)
T PF04762_consen 559 FQLSSDGELSQIVKFPQPCPWM-EVCQINGSEDKRVLFGLSSNGRLYA---NS------RLLA---------SNCTSFAV 619 (928)
T ss_pred EEeecCCCccccccCCCCCcEE-EEEEECCccceeEEEEECCCCEEEE---CC------EEEe---------cCCceEEE
Confidence 8776654322 22333222222 222222322 3443344444443 11 0111 14666666
Q ss_pred ccCCCEEE-EEeCCeEEEEEcC-CcceeeEeecCCCCC-EEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 001403 937 HKDQTRFL-LVHETHLAIYEAE-ELTCLKQWFPISSVP-ISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1005 (1084)
Q Consensus 937 s~dg~~la-~~~d~~i~vwd~~-~~~~~~~~~~~h~~~-v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~ 1005 (1084)
. +.+|+ +.....+++.++. .-+.+......+... -..+.--..|..|+++-....=-|-.++-|.+.
T Consensus 620 ~--~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~VERGsriVt~vp~~~~vVLQmPRGNLE 689 (928)
T PF04762_consen 620 T--DSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRVERGSRIVTAVPSDTSVVLQMPRGNLE 689 (928)
T ss_pred E--cCEEEEEecCceEEEEECcCchhhcccccCccccccccccccCccCCEEEEEeCCCceEEEEcCCCchh
Confidence 3 44444 4667778888887 222111111111000 001222346888888876666666778877664
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.7e-11 Score=123.04 Aligned_cols=365 Identities=12% Similarity=0.161 Sum_probs=227.1
Q ss_pred EEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCE
Q 001403 505 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 584 (1084)
Q Consensus 505 iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 584 (1084)
+|...+......+....-++..+++||.|.+|++... ..|.+|....+..+..+.. ..|..+.|+|.+++
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~-----~~V~~~~g~~~~~l~~~~~-----~~V~~~~fSP~~kY 85 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHA-----AGVECWGGPSKAKLVRFRH-----PDVKYLDFSPNEKY 85 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhc-----cceEEccccchhheeeeec-----CCceecccCcccce
Confidence 4544444444444445668889999999999998764 2399999888776666654 35999999999999
Q ss_pred EEEEECC---------------CcEEEEECCCCeEEEEEcCCCCCCCcc-eEEEecCCCEEEEEECCCeEEEEEcCCC-C
Q 001403 585 ILAAGDD---------------HVIKIWDMNKVQLLTTIDAGGGLPENP-RICFNKNGTLLAVIANENRIKILETPES-N 647 (1084)
Q Consensus 585 l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~ 647 (1084)
|.+-+.. ..+.+||..+|.++..+.......... -+.|+-+.+++|-. -...+.|+++... .
T Consensus 86 L~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~ 164 (561)
T COG5354 86 LVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIE 164 (561)
T ss_pred eeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccc
Confidence 9986543 349999999999999887654432223 67889888877655 3357899986221 1
Q ss_pred eeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccc
Q 001403 648 SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 727 (1084)
Q Consensus 648 ~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 727 (1084)
...........+....++|.+... .+..
T Consensus 165 ~~p~~~lr~~gi~dFsisP~~n~~-----------------------------~la~----------------------- 192 (561)
T COG5354 165 EHPFKNLRPVGILDFSISPEGNHD-----------------------------ELAY----------------------- 192 (561)
T ss_pred cCchhhccccceeeEEecCCCCCc-----------------------------eEEE-----------------------
Confidence 110000112233333333321100 0000
Q ss_pred eEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCC
Q 001403 728 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 807 (1084)
Q Consensus 728 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 807 (1084)
|.|. ..+..+++++|.++.++. +.+..+ ....-..+.|.+.|.
T Consensus 193 ------~tPE-----k~~kpa~~~i~sIp~~s~----------------------l~tk~l----fk~~~~qLkW~~~g~ 235 (561)
T COG5354 193 ------WTPE-----KLNKPAMVRILSIPKNSV----------------------LVTKNL----FKVSGVQLKWQVLGK 235 (561)
T ss_pred ------Eccc-----cCCCCcEEEEEEccCCCe----------------------eeeeee----EeecccEEEEecCCc
Confidence 1111 012344555555543221 111111 011112345666666
Q ss_pred EEEEE------------eCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEE--EeCCCeEEEEEcCCceeeee
Q 001403 808 YLFSA------------SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI--GMDDSTILIYNARSSEVISK 873 (1084)
Q Consensus 808 ~l~~~------------sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~--g~~dg~i~iwd~~~~~~~~~ 873 (1084)
++..- +...+.++++..... .......++|...+|.| .++.+++ |-.+-.+-++|++.. +...
T Consensus 236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~~ 312 (561)
T COG5354 236 YLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN-LRFY 312 (561)
T ss_pred eEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecc-cCCceeEEecccccceeecccccc-eEEe
Confidence 55432 124588888874333 33325678999999999 5555444 357789999999855 4433
Q ss_pred ecccccCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE----
Q 001403 874 LEGHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---- 946 (1084)
Q Consensus 874 l~~h~~~V~~l~~spd~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~---- 946 (1084)
+. ...=..+.|||.+++++.++-| |.|-+||....- .++....+. ..+.+.|||||+++-+.
T Consensus 313 ~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf----~~~~~~~~~-----n~s~~~wspd~qF~~~~~ts~ 381 (561)
T COG5354 313 FP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF----KVAGAFNGL-----NTSYCDWSPDGQFYDTDTTSE 381 (561)
T ss_pred cC--CcccccccccCcccEEEEecCCccccceEEeccCCce----EEEEEeecC-----CceEeeccCCceEEEecCCCc
Confidence 33 3444568899999999998876 679999998732 233333332 35678899999999873
Q ss_pred ---eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCC
Q 001403 947 ---HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 992 (1084)
Q Consensus 947 ---~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg 992 (1084)
.|..+.|||+...... ..+.+.|-|.|++..+.+.+.
T Consensus 382 k~~~Dn~i~l~~v~g~~~f---------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 382 KLRVDNSIKLWDVYGAKVF---------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ccccCcceEEEEecCchhh---------hhhhccccCCcccceeeccCC
Confidence 3678999998744322 456778888898888877665
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.5e-10 Score=123.20 Aligned_cols=209 Identities=13% Similarity=0.185 Sum_probs=136.0
Q ss_pred ccEEEecCCCCEEEEEe--CCeEEEEEcCC-ceeEEE---E----------cCCCCCeEEEEEcCCCCcEEEEEe-CCCe
Q 001403 797 VPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT---I----------MPPSPTATSLAFNPHDNNVIAIGM-DDST 859 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~s--dg~i~vwd~~~-~~~~~~---~----------~~~~~~i~~l~~s~~d~~~la~g~-~dg~ 859 (1084)
...++++|++++|+++. +|.+.++++.. +..... + ........++.|+| +++++++.. ....
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~ 167 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADR 167 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTE
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCE
Confidence 44677888888888886 58888888875 333222 1 11235678999999 788777664 3448
Q ss_pred EEEEEcCCce--ee--eeec-ccccCEEEEEEcCCCCEEEEEe-CCCcEEEEeCC--CCceeeeeeeecCCCCccCCCCc
Q 001403 860 ILIYNARSSE--VI--SKLE-GHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSE 931 (1084)
Q Consensus 860 i~iwd~~~~~--~~--~~l~-~h~~~V~~l~~spd~~~l~s~s-~dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v 931 (1084)
|++|++.... +. ..+. ......+.++|+||++++.... .+++|.++++. .+.......+.............
T Consensus 168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence 9999997654 32 2222 2345678999999999886654 57889999998 55444444444332211111257
Q ss_pred eEEEEccCCCEEEEE--eCCeEEEEEcC--Ccce--eeEeecCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEc--CCC
Q 001403 932 THIQFHKDQTRFLLV--HETHLAIYEAE--ELTC--LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEA--SNL 1002 (1084)
Q Consensus 932 ~~~~~s~dg~~la~~--~d~~i~vwd~~--~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~dg~i~vwd~--~~~ 1002 (1084)
..++++|||++|.++ ..+.|.+|++. +|+. +..+. ........++|+|||++|+++. .++.|.+|++ .+|
T Consensus 248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC
Confidence 899999999999996 45689999993 3433 22222 1234578999999999999887 4568999876 567
Q ss_pred ceeEE
Q 001403 1003 EVQCR 1007 (1084)
Q Consensus 1003 ~~~~~ 1007 (1084)
.+...
T Consensus 327 ~l~~~ 331 (345)
T PF10282_consen 327 KLTPV 331 (345)
T ss_dssp EEEEE
T ss_pred cEEEe
Confidence 66533
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-12 Score=145.86 Aligned_cols=238 Identities=19% Similarity=0.178 Sum_probs=154.8
Q ss_pred ccCCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEc
Q 001403 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 397 (1084)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fs 397 (1084)
++.+......+.+..+.+.+.+.+|||||+.||+.+.+ .+. ..|.+||+.++.... +......+.+.+||
T Consensus 179 ~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~--~~~----~~I~~~dl~~g~~~~----l~~~~g~~~~~~~S 248 (427)
T PRK02889 179 QISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFE--SKK----PVVYVHDLATGRRRV----VANFKGSNSAPAWS 248 (427)
T ss_pred EEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEcc--CCC----cEEEEEECCCCCEEE----eecCCCCccceEEC
Confidence 33444455556677777899999999999999987543 221 579999998765432 22234556789999
Q ss_pred CCCCEEEE-EeCCCEEEEEEc--cCCccccceeeeecccccEeEEEeecCCCcEEEEEEe-CCCcEEEEE--CCCCceee
Q 001403 398 PDGSLLGV-AYSKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWD--AVTGSRTY 471 (1084)
Q Consensus 398 pdg~~las-~~~dg~v~iwd~--~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~-~d~~i~vwd--~~~g~~~~ 471 (1084)
|||+.|+. .+.++...||.+ .++. .+ .+..+.+.+....|+|||+. ++..+ .++...+|. +.++.. .
T Consensus 249 PDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~--l~f~s~~~g~~~Iy~~~~~~g~~-~ 321 (427)
T PRK02889 249 PDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS--IYFTSDRGGAPQIYRMPASGGAA-Q 321 (427)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE--EEEEecCCCCcEEEEEECCCCce-E
Confidence 99999885 566777666654 4443 22 34456566678899999994 44333 345666664 445543 2
Q ss_pred EeccCCCcEEEEeecccCCCcEEEEEecCC---eEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCee
Q 001403 472 SFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 548 (1084)
Q Consensus 472 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 548 (1084)
.+..+........| ++||++|+..+.++ .|.+||+.+++...... ........|+|||+.|+..+..+ +...
T Consensus 322 ~lt~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~-g~~~ 396 (427)
T PRK02889 322 RVTFTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQG-GRSV 396 (427)
T ss_pred EEecCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecC-CCEE
Confidence 22222233334567 45778888776654 59999998776543322 22346789999999999887643 3566
Q ss_pred EEEecCCCceEeeeeeccccccCceEEEEEcCC
Q 001403 549 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 581 (1084)
Q Consensus 549 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 581 (1084)
+++.+. ++.....+..+. +.+...+|+|-
T Consensus 397 l~~~~~-~g~~~~~l~~~~---g~~~~p~wsp~ 425 (427)
T PRK02889 397 LAAVSS-DGRIKQRLSVQG---GDVREPSWGPF 425 (427)
T ss_pred EEEEEC-CCCceEEeecCC---CCCCCCccCCC
Confidence 777777 455555555444 56667777763
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-12 Score=133.24 Aligned_cols=274 Identities=11% Similarity=0.164 Sum_probs=181.9
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccc---cceeeeecCCCCCeEEEEE-----cCCCCEEEEEe
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSM---LFKTALVRDPGVSVNRVVW-----SPDGSLLGVAY 407 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~---~~~~~~~~~h~~~V~~v~f-----spdg~~las~~ 407 (1084)
.+....++-.|++|+... | ..+.+|+...... .+.+..+.+ ....|=+| .|+|--|..|-
T Consensus 125 ~~~~~~~~~~gd~lcFnv-----g-----~~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g~dllIGf 192 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-----G-----RELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATPKGLDLLIGF 192 (636)
T ss_pred ceeeccccCCCCEEEEec-----C-----CeEEEEEccCcchhccchhhhcccC--CCCceecccccccCCCCcceEEee
Confidence 455666677788887732 1 6788998873221 122222322 23334444 45777888898
Q ss_pred CCCEEEEEEccCCccccceeeee--cccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEee
Q 001403 408 SKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 485 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~ 485 (1084)
.-|.|.+.|....+..+ +.... -.+..|+|+.|-|.++. .++.+-.+|.+.++|.+ +....+...+
T Consensus 193 ~tGqvq~idp~~~~~sk-lfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~~t~p~~ 260 (636)
T KOG2394|consen 193 TTGQVQLIDPINFEVSK-LFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCGATAPSY 260 (636)
T ss_pred ccCceEEecchhhHHHH-hhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------ccccCCCCcc
Confidence 89999999877633222 11111 12368999999998876 45555668999999862 1111111222
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeec
Q 001403 486 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 565 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 565 (1084)
..-.++..+.....-+. .+..++..+......|..++|+|||++||+++. ++.++|+|..+.+++..++.
T Consensus 261 ~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eLlg~mkS 330 (636)
T KOG2394|consen 261 QALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQELLGVMKS 330 (636)
T ss_pred cccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHHHHHHHh
Confidence 22223323322111000 111233333334458899999999999999986 88899999999988888777
Q ss_pred cccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec---------------------
Q 001403 566 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK--------------------- 624 (1084)
Q Consensus 566 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~--------------------- 624 (1084)
.- +...|++|+|||++|++|++|.-|.||.+..++.+..-++| ...|..|+|.|
T Consensus 331 YF---GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH--kSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~ 405 (636)
T KOG2394|consen 331 YF---GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH--KSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDV 405 (636)
T ss_pred hc---cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc--ccceeeEeecccccccccccccccccccccch
Confidence 66 78999999999999999999999999999999888876655 44688888872
Q ss_pred --------------CC-------------CEEEEEECCCeEEEEEcCCCCe
Q 001403 625 --------------NG-------------TLLAVIANENRIKILETPESNS 648 (1084)
Q Consensus 625 --------------~~-------------~~l~~~~~dg~i~iwd~~~~~~ 648 (1084)
++ -.+.+.+.|..+.+||+.....
T Consensus 406 ~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 406 AHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred hcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence 01 2466778899999999987643
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.5e-12 Score=141.45 Aligned_cols=238 Identities=14% Similarity=0.109 Sum_probs=153.9
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC---CEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
..+.+||....... . +..+...+.+.+|||||+.||..+.+ ..|.+||+.+++... +....+.+.+.+|
T Consensus 176 ~~L~~~D~dG~~~~-~---l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~ 247 (427)
T PRK02889 176 YQLQISDADGQNAQ-S---ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAW 247 (427)
T ss_pred cEEEEECCCCCCce-E---eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEE
Confidence 56777776432211 1 33467789999999999999987643 469999999886432 3334455678999
Q ss_pred ecCCCcEEEEEEeCCCcEEEEE--CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEec-CCeEEEEECC--CCCceEe
Q 001403 442 SAPCKQISVITCGDDKTIKVWD--AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD--SLGARVD 516 (1084)
Q Consensus 442 s~d~~~l~l~s~~~d~~i~vwd--~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~--~~~~~~~ 516 (1084)
+|||+. ++++.+.++...||. +.++. ...+..+........|+ +||+.++..+. +|...+|.++ .+.. ..
T Consensus 248 SPDG~~-la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS--pDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~ 322 (427)
T PRK02889 248 SPDGRT-LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFS--PDGRSIYFTSDRGGAPQIYRMPASGGAA-QR 322 (427)
T ss_pred CCCCCE-EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEc--CCCCEEEEEecCCCCcEEEEEECCCCce-EE
Confidence 999994 334566777766664 44444 55666566556667784 46777776554 5667777654 3332 22
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCC---c
Q 001403 517 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---V 593 (1084)
Q Consensus 517 ~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~ 593 (1084)
+..........+|+|||++++..+..+ +...|.+||+.+++....... .......|+||++.|+.++.++ .
T Consensus 323 lt~~g~~~~~~~~SpDG~~Ia~~s~~~-g~~~I~v~d~~~g~~~~lt~~-----~~~~~p~~spdg~~l~~~~~~~g~~~ 396 (427)
T PRK02889 323 VTFTGSYNTSPRISPDGKLLAYISRVG-GAFKLYVQDLATGQVTALTDT-----TRDESPSFAPNGRYILYATQQGGRSV 396 (427)
T ss_pred EecCCCCcCceEECCCCCEEEEEEccC-CcEEEEEEECCCCCeEEccCC-----CCccCceECCCCCEEEEEEecCCCEE
Confidence 222233344678999999999876432 345799999998876543322 1235678999999998877544 3
Q ss_pred EEEEECCCCeEEEEEcCCCCCCCcceEEEec
Q 001403 594 IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 624 (1084)
Q Consensus 594 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 624 (1084)
+++.+. ++.....+..+.+ .+...+|+|
T Consensus 397 l~~~~~-~g~~~~~l~~~~g--~~~~p~wsp 424 (427)
T PRK02889 397 LAAVSS-DGRIKQRLSVQGG--DVREPSWGP 424 (427)
T ss_pred EEEEEC-CCCceEEeecCCC--CCCCCccCC
Confidence 555566 4555555543322 356677776
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.8e-12 Score=143.52 Aligned_cols=236 Identities=13% Similarity=0.081 Sum_probs=158.2
Q ss_pred cCCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC
Q 001403 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 398 (1084)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp 398 (1084)
+.+......+.+..|...+.+.+|||||+.||..+.+ .|. ..|.+||+.++.... +..+...+.+.+|||
T Consensus 186 ~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~--~g~----~~i~~~dl~~g~~~~----l~~~~g~~~~~~~SP 255 (435)
T PRK05137 186 IMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYA--NGR----PRVYLLDLETGQREL----VGNFPGMTFAPRFSP 255 (435)
T ss_pred EECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEec--CCC----CEEEEEECCCCcEEE----eecCCCcccCcEECC
Confidence 3445556667788888899999999999999997543 222 789999998765421 344666788999999
Q ss_pred CCCEEEEE-eCCC--EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEe-CC--CcEEEEECCCCceeeE
Q 001403 399 DGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DD--KTIKVWDAVTGSRTYS 472 (1084)
Q Consensus 399 dg~~las~-~~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~-~d--~~i~vwd~~~g~~~~~ 472 (1084)
||+.|+.. +.++ .|.+||+.+++.. .+..+.+.....+|+|||+. ++..+ .+ ..|.+||+.++.. ..
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d~~g~~~-~~ 328 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMNADGSNP-RR 328 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEECCCCCe-EE
Confidence 99988754 4444 4777888887542 35566666778999999994 44444 23 3688889776654 34
Q ss_pred eccCCCcEEEEeecccCCCcEEEEEecC---CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCC--e
Q 001403 473 FEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE--S 547 (1084)
Q Consensus 473 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~--~ 547 (1084)
+..+...+....|+ ++|+.|+..+.+ ..|.+||++.... ..+.. ...+..+.|+|||+.|+..+...... .
T Consensus 329 lt~~~~~~~~~~~S--pdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 329 ISFGGGRYSTPVWS--PRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred eecCCCcccCeEEC--CCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 44345556667785 467788776543 2577888765443 22322 23467889999999998876533221 4
Q ss_pred eEEEecCCCceEeeeeeccccccCceEEEEEcC
Q 001403 548 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 580 (1084)
Q Consensus 548 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~ 580 (1084)
.++++|+..+.. ..+.. . +.+...+|+|
T Consensus 405 ~L~~~dl~g~~~-~~l~~-~---~~~~~p~Wsp 432 (435)
T PRK05137 405 KLYTVDLTGRNE-REVPT-P---GDASDPAWSP 432 (435)
T ss_pred eEEEEECCCCce-EEccC-C---CCccCcccCC
Confidence 688889876654 33332 2 3455666765
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-11 Score=129.68 Aligned_cols=299 Identities=13% Similarity=0.073 Sum_probs=201.6
Q ss_pred cccceEEEEEEecCCCeEEEeec-CCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEe
Q 001403 724 VKANKISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 802 (1084)
Q Consensus 724 ~~~~~i~~l~~s~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 802 (1084)
.+...-+.+..+|||+++++.+. --.|++||+..-.. .+...-....|.-.-+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--------------------------KFERhlDae~V~feiL 102 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--------------------------KFERHLDAEVVDFEIL 102 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccccee--------------------------eeeecccccceeEEEe
Confidence 35566788999999999988776 46788887653211 0111012334444444
Q ss_pred cCCCCEEEEE-eCCeEEEEEcCCceeEE-EEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccC
Q 001403 803 SKNDAYLFSA-SGGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR 880 (1084)
Q Consensus 803 s~dg~~l~~~-sdg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~ 880 (1084)
+.|-..++.- .|.+|.+...- |.... .++ ..-..++++.....++. ++....|+-++++.|..+..+....+.
T Consensus 103 sDD~SK~v~L~~DR~IefHak~-G~hy~~RIP---~~GRDm~y~~~scDly~-~gsg~evYRlNLEqGrfL~P~~~~~~~ 177 (703)
T KOG2321|consen 103 SDDYSKSVFLQNDRTIEFHAKY-GRHYRTRIP---KFGRDMKYHKPSCDLYL-VGSGSEVYRLNLEQGRFLNPFETDSGE 177 (703)
T ss_pred ccchhhheEeecCceeeehhhc-CeeeeeecC---cCCccccccCCCccEEE-eecCcceEEEEcccccccccccccccc
Confidence 5554433333 36666654432 22211 121 12245666553333444 444567999999999999999888899
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeee-ecCCCCcc--CCCCceEEEEccCCCEEEEE-eCCeEEEEEc
Q 001403 881 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL-QTPDGVMT--LAPSETHIQFHKDQTRFLLV-HETHLAIYEA 956 (1084)
Q Consensus 881 V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~--~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~ 956 (1084)
++++..++-..+|++|+.||.|..||..........-+ .....+.. ....|+++.|+.||-.+++| ++|.+.|||+
T Consensus 178 lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 178 LNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL 257 (703)
T ss_pred ceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEc
Confidence 99999999999999999999999999987543322111 11111111 12469999999999999996 8999999999
Q ss_pred CCcceeeEeecCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCC
Q 001403 957 EELTCLKQWFPISSVPISQATFSCD--CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1034 (1084)
Q Consensus 957 ~~~~~~~~~~~~h~~~v~~l~fs~d--g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1034 (1084)
.+.+.+..--.+..-+|..+.|-+. +..+++. ....++|||-.+|+....+.+..- +. .+++-| +
T Consensus 258 Ra~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~---------lN--D~C~~p-~ 324 (703)
T KOG2321|consen 258 RASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSD---------LN--DFCFVP-G 324 (703)
T ss_pred ccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccCC---------cC--ceeeec-C
Confidence 9888776533333778999999774 4556654 567899999999999988873321 23 466777 5
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCcccCCCCC
Q 001403 1035 PTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1066 (1084)
Q Consensus 1035 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~ 1066 (1084)
+.++++|-.++.+..+=++.-++.=.++++++
T Consensus 325 sGm~f~Ane~~~m~~yyiP~LGPaPrWCSfLd 356 (703)
T KOG2321|consen 325 SGMFFTANESSKMHTYYIPSLGPAPRWCSFLD 356 (703)
T ss_pred CceEEEecCCCcceeEEccccCCCchhhhHHH
Confidence 78999999999999888877665434444444
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-10 Score=122.96 Aligned_cols=328 Identities=13% Similarity=0.171 Sum_probs=201.0
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE-----------CC
Q 001403 523 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----------DD 591 (1084)
Q Consensus 523 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------~d 591 (1084)
.-+-+.|||.|.+|++-... -|.+|--.+-..++.+.. ..|.-+.|||..++|++-+ +.
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~-----GI~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~ 281 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQ-----GIALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG 281 (698)
T ss_pred eeeeEEecCCceEEEEEecc-----ceeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCC
Confidence 34678999999999998743 299998777666666653 3588999999999999955 22
Q ss_pred CcEEEEECCCCeEEEEEcCCC-CCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCce
Q 001403 592 HVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 670 (1084)
Q Consensus 592 g~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 670 (1084)
..++|||+.+|...+.+.... ....-.-+.||.|++++|.-.. ..|.||+...-.++..-..
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl---------------- 344 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSL---------------- 344 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccccc----------------
Confidence 579999999999998887532 2223356789999999998776 5788887664322211110
Q ss_pred eeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCce
Q 001403 671 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 750 (1084)
Q Consensus 671 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 750 (1084)
.-..|....|+|.+..|+--.
T Consensus 345 ------------------------------------------------------ki~gIr~FswsP~~~llAYwt----- 365 (698)
T KOG2314|consen 345 ------------------------------------------------------KISGIRDFSWSPTSNLLAYWT----- 365 (698)
T ss_pred ------------------------------------------------------CCccccCcccCCCcceEEEEc-----
Confidence 112344445555543222111
Q ss_pred EEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEE
Q 001403 751 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT 830 (1084)
Q Consensus 751 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~ 830 (1084)
+.+.. .. ..+.+..+.+++.+++
T Consensus 366 --------------------------pe~~~-----------~p--------------------arvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 366 --------------------------PETNN-----------IP--------------------ARVTLMEVPSKREIRT 388 (698)
T ss_pred --------------------------ccccC-----------Cc--------------------ceEEEEecCccceeee
Confidence 11110 00 1233333334444333
Q ss_pred EcCCCCCeEEEEEcCCCCcEEEEE----------eCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeC--
Q 001403 831 IMPPSPTATSLAFNPHDNNVIAIG----------MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG-- 898 (1084)
Q Consensus 831 ~~~~~~~i~~l~~s~~d~~~la~g----------~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~-- 898 (1084)
-.-+.-.=..+-|-. +|.+|+.- +.-..+.|+.+.....--..-.-...|...+|-|.|..+++-+.
T Consensus 389 ~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~ 467 (698)
T KOG2314|consen 389 KNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNT 467 (698)
T ss_pred ccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccc
Confidence 332222222334444 44454432 22224666666554322112224577899999999998886654
Q ss_pred -CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE----eCCeEEEEEcCCcceeeEeecCCCCCE
Q 001403 899 -DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELTCLKQWFPISSVPI 973 (1084)
Q Consensus 899 -dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~----~d~~i~vwd~~~~~~~~~~~~~h~~~v 973 (1084)
..++.+|.+++.. .....+..++.. ....+.|||.|++++++ ..|.+.++|+.-..+...-...| ...
T Consensus 468 ~k~tvsfY~~e~~~-~~~~lVk~~dk~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~a 540 (698)
T KOG2314|consen 468 VKNTVSFYAVETNI-KKPSLVKELDKK-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAA 540 (698)
T ss_pred cccceeEEEeecCC-Cchhhhhhhccc-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-ccc
Confidence 3578999988522 122234443331 36789999999999984 46789999998544444323334 356
Q ss_pred EEEEEccCCCEEEEEeCC------CcEEEEEcCC
Q 001403 974 SQATFSCDCRMVFTSFVD------GTLSIHEASN 1001 (1084)
Q Consensus 974 ~~l~fs~dg~~l~t~~~d------g~i~vwd~~~ 1001 (1084)
+.+.|.|.|+|++|+++- .--++|+...
T Consensus 541 t~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 541 TEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred ccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 788999999999999864 3355566553
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.4e-10 Score=111.98 Aligned_cols=281 Identities=11% Similarity=0.117 Sum_probs=183.4
Q ss_pred cCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecC---CceEEeeccCCccCcCcccceecCCeee
Q 001403 699 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLY 775 (1084)
Q Consensus 699 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~ 775 (1084)
++.|.+|+++......... ........++-++++|+++.|.++..+ |.+..|.+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~---~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD------------------- 72 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL---QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRID------------------- 72 (346)
T ss_pred CCceEEEEEeCcccccchh---hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEc-------------------
Confidence 4567888877432221111 112255677889999999999888765 566666543
Q ss_pred cCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--CCeEEEEEcCC-ceeEEE--EcCCCCC----------eEE
Q 001403 776 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT--IMPPSPT----------ATS 840 (1084)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~-~~~~~~--~~~~~~~----------i~~ 840 (1084)
..+|.......... ...+...++++++|+++++++ .|.|.++-+.. |..... ...|.+. +..
T Consensus 73 -~~~G~Lt~ln~~~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 73 -PDDGRLTFLNRQTL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred -CCCCeEEEeecccc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 33333222222211 233448899999999999998 58999999965 433221 1123333 778
Q ss_pred EEEcCCCCcEEEEEeCC-CeEEEEEcCCceeeeeec---ccccCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC--Ccee
Q 001403 841 LAFNPHDNNVIAIGMDD-STILIYNARSSEVISKLE---GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQ 913 (1084)
Q Consensus 841 l~~s~~d~~~la~g~~d-g~i~iwd~~~~~~~~~l~---~h~~~V~~l~~spd~~~l~s~s~-dg~I~iwd~~~--~~~~ 913 (1084)
..+.| ++++|++.+-. -.|.+|++..|++...-. .....-+.|+|+|++++.....+ +++|.+|..+. ++..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 89999 89888877532 369999999876532211 23456788999999998876664 89999999988 4544
Q ss_pred eeeeeecCCCCccCCCCceEEEEccCCCEEEEEeC--CeEEEEEcCC--cce-eeEeecCCCCCEEEEEEccCCCEEEEE
Q 001403 914 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--THLAIYEAEE--LTC-LKQWFPISSVPISQATFSCDCRMVFTS 988 (1084)
Q Consensus 914 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d--~~i~vwd~~~--~~~-~~~~~~~h~~~v~~l~fs~dg~~l~t~ 988 (1084)
....+..+........+...+..++||++|.++.. ..|.++.+.. ++. +......+...-....|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 44444443333333356889999999999999744 4688887753 322 112222334446788999999999998
Q ss_pred eCCC-cEEEEEcC--CCcee
Q 001403 989 FVDG-TLSIHEAS--NLEVQ 1005 (1084)
Q Consensus 989 ~~dg-~i~vwd~~--~~~~~ 1005 (1084)
..++ .|.++..+ +|++.
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 309 NQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCCcEEEEEEcCCCceEE
Confidence 8764 57887665 44443
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.9e-11 Score=125.53 Aligned_cols=287 Identities=14% Similarity=0.136 Sum_probs=191.9
Q ss_pred CceEEEEcCCCceeee----ecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCE
Q 001403 336 SPMSMDFHPVQHTLLL----GLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 411 (1084)
Q Consensus 336 ~V~~v~~spdg~~las----~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~ 411 (1084)
.+.++.|||-|.||.+ +.++..++. ...+.+|++++........ .. .... ++..||+|..+.|-- ..+.
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~---~pn~~v~~vet~~~~s~~q-~k-~Q~~-W~~qfs~dEsl~arl-v~ne 147 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNAS---NPNVLVYNVETGVQRSQIQ-KK-MQNG-WVPQFSIDESLAARL-VSNE 147 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCC---CCceeeeeeccceehhhee-hh-hhcC-cccccccchhhhhhh-hcce
Confidence 7899999999999999 444433333 3788999999844333221 11 2222 689999987654433 4556
Q ss_pred EEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEE-----EeCCCcEEEEECCCCceeeEe---ccCCCcEEEE
Q 001403 412 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT-----CGDDKTIKVWDAVTGSRTYSF---EGHGAPVYSL 483 (1084)
Q Consensus 412 v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s-----~~~d~~i~vwd~~~g~~~~~~---~~h~~~v~~~ 483 (1084)
+.+|+..+-+.+. -.-|...|+.+++||.+....+++ .|.-..|+||...-+.....+ .-....-..+
T Consensus 148 v~f~~~~~f~~~~----~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm 223 (566)
T KOG2315|consen 148 VQFYDLGSFKTIQ----HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQM 223 (566)
T ss_pred EEEEecCCcccee----eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEE
Confidence 9999998744332 234677899999999865435554 355668999987632221111 1112223345
Q ss_pred eecccCCCcEEEE-EecC---------CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEec
Q 001403 484 CPHAKENIHFIFS-ISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 553 (1084)
Q Consensus 484 ~~~~~~~~~~l~s-~s~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd 553 (1084)
.|...+.+-++++ ...| .++++.+++..... .--...++|.++.|+|+|+.++++..- .-..+.++|
T Consensus 224 ~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~-V~L~k~GPVhdv~W~~s~~EF~VvyGf--MPAkvtifn 300 (566)
T KOG2315|consen 224 KWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS-VPLLKEGPVHDVTWSPSGREFAVVYGF--MPAKVTIFN 300 (566)
T ss_pred EeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE-EecCCCCCceEEEECCCCCEEEEEEec--ccceEEEEc
Confidence 6655444433322 2233 35777776632222 233346799999999999998887643 244588999
Q ss_pred CCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE---CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEE
Q 001403 554 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 630 (1084)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 630 (1084)
++ +..+..+.. ++-+++-|+|.|++++.+| -.|.|-|||+.+.+++..+.... ..-+.|+|||++++
T Consensus 301 lr-~~~v~df~e-----gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~----tt~~eW~PdGe~fl 370 (566)
T KOG2315|consen 301 LR-GKPVFDFPE-----GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN----TTVFEWSPDGEYFL 370 (566)
T ss_pred CC-CCEeEeCCC-----CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC----ceEEEEcCCCcEEE
Confidence 76 455444432 5678899999999999877 45899999999998888887543 35689999999999
Q ss_pred EEEC------CCeEEEEEcCCC
Q 001403 631 VIAN------ENRIKILETPES 646 (1084)
Q Consensus 631 ~~~~------dg~i~iwd~~~~ 646 (1084)
+++. |+.++||+....
T Consensus 371 TATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 371 TATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EEeccccEEecCCeEEEEecCc
Confidence 9876 688999998754
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-11 Score=123.05 Aligned_cols=224 Identities=13% Similarity=0.167 Sum_probs=168.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccc-cceeeeecccccEeEEEeecCCCcEEEEEEeCC--CcEEEEE
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWD 463 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d--~~i~vwd 463 (1084)
.+.+|..++.. ...|++|-.+|.+.+|..+.+..- .....+..+ ..+..+.-++.... ++++||.. ..+.|||
T Consensus 104 ~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 104 GTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWD 179 (412)
T ss_pred ccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeee
Confidence 44556555554 346788889999999999855311 111123333 45777777777665 67779988 8899999
Q ss_pred CCCCceeeEeccCC---------CcEEEEeecccCCCcEEEEEecCCeEEEEECCCCC-ceEeecCCCCeEEEEEEcCCC
Q 001403 464 AVTGSRTYSFEGHG---------APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANG 533 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~---------~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~d~ 533 (1084)
++..+.+.+-+.-. -.++++.|.+..+...+++++.-+.+++||...+. +...+.....+++++...|+|
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g 259 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG 259 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC
Confidence 99886655443211 23456677655446899999999999999998654 456777788899999999999
Q ss_pred CEEEEEeeCCCCCeeEEEecCCCceEeee-eeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCC
Q 001403 534 RRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 612 (1084)
Q Consensus 534 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 612 (1084)
++++++.. .+.+..+|.++++.... +.+.. +.++++..+|.++++++++-|+.+||+|+.+.+++...-...
T Consensus 260 n~Iy~gn~----~g~l~~FD~r~~kl~g~~~kg~t---Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs 332 (412)
T KOG3881|consen 260 NFIYTGNT----KGQLAKFDLRGGKLLGCGLKGIT---GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS 332 (412)
T ss_pred cEEEEecc----cchhheecccCceeeccccCCcc---CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc
Confidence 99999865 56699999999998877 77777 899999999999999999999999999999977776655443
Q ss_pred CCCCcceEEEec
Q 001403 613 GLPENPRICFNK 624 (1084)
Q Consensus 613 ~~~~v~~v~~s~ 624 (1084)
. .+++.+.+
T Consensus 333 ~---lt~il~~~ 341 (412)
T KOG3881|consen 333 R---LTFILLRD 341 (412)
T ss_pred c---ccEEEecC
Confidence 3 45555544
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-09 Score=113.26 Aligned_cols=205 Identities=11% Similarity=0.088 Sum_probs=131.0
Q ss_pred cEEEecCCCCEEEEEe---CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ceee-e
Q 001403 798 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI-S 872 (1084)
Q Consensus 798 ~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~-~~~~-~ 872 (1084)
..++++|||+++.+.. +..+.+.|+.+++.+.++.-.. ...-...+. +. .. +.+.||......+.+ |+.. .
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~-~~-~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DT-FF-MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-Cc-cE-EEeecCceEEEEecCCCceEEe
Confidence 3578899999888775 5789999999999998887533 222222322 22 11 223344444333322 2211 1
Q ss_pred ---eecccccCEE-EEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCc----cCCCCceEEEEccCCCEE
Q 001403 873 ---KLEGHSKRVT-GLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM----TLAPSETHIQFHKDQTRF 943 (1084)
Q Consensus 873 ---~l~~h~~~V~-~l~~sp-d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~dg~~l 943 (1084)
.+.+-..++. .-.|++ ||+++..... |+|.+-|+.................. -..+...-+++++|++.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 1111000000 014556 8888876666 99999998765433333333221110 011345569999999998
Q ss_pred EEEe---C--------CeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEEcCCCceeEEec
Q 001403 944 LLVH---E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 944 a~~~---d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
.+.. . +.|.++|..+++.+..+..+ ..+..++|||||+ +|++.. .++.|.+.|+.+++.+.++.
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 8832 1 57999999999999987765 4889999999999 877666 57889999999999998874
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.4e-11 Score=124.39 Aligned_cols=326 Identities=9% Similarity=0.105 Sum_probs=201.4
Q ss_pred CCCCCCcchhhhcccccCCCccCCCc--cceeeecccCCCCceEEEEcCCCceeeeecccccC---ccccccceEEEEEc
Q 001403 298 PDYSPKSSLKKEMFQSFGETSFSDFP--KTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNS---GQKLFIRNFKVWDI 372 (1084)
Q Consensus 298 ~~fsP~~s~~~~~f~~~~~~~~~~~p--~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~s---g~~~~~~~v~iwd~ 372 (1084)
.-|||.++++....+.-.. ++.=+ ..+.+. .|. .|..+.|||+.+||++=+....+ +++ ....++|||+
T Consensus 216 v~wSP~GTYL~t~Hk~GI~--lWGG~~f~r~~RF--~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~-e~~~l~IWDI 289 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQGIA--LWGGESFDRIQRF--YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDN-EGQQLIIWDI 289 (698)
T ss_pred EEecCCceEEEEEecccee--eecCccHHHHHhc--cCC-CceeeecCCccceEEEecCCccccCcccC-CCceEEEEEc
Confidence 4688888887555332100 01111 111111 344 89999999999999992221111 011 1278999999
Q ss_pred CCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEE
Q 001403 373 GACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT 452 (1084)
Q Consensus 373 ~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s 452 (1084)
.++.......++.+....-.-+.||.|++|+|--..++ |.||+..+-..+... . -.-..|....|+|.+. +||-
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s-isIyEtpsf~lld~K-s--lki~gIr~FswsP~~~--llAY 363 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS-ISIYETPSFMLLDKK-S--LKISGIRDFSWSPTSN--LLAY 363 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccce-EEEEecCceeeeccc-c--cCCccccCcccCCCcc--eEEE
Confidence 99877655544444333334578999999999887765 999998763322110 1 1234688899999988 5553
Q ss_pred EeC-----CCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEe----------cCCeEEEEECCCCCceEee
Q 001403 453 CGD-----DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------VDGKIKAWLYDSLGARVDY 517 (1084)
Q Consensus 453 ~~~-----d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~ 517 (1084)
-.. -..+.+-.+.+++.+++-.-|. |..+.++...+|.+|+.-- .-..+.|+.++........
T Consensus 364 wtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ 441 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV 441 (698)
T ss_pred EcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence 221 1246667777777776655444 4444555566777776531 1113555655554443333
Q ss_pred cCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-c---eEeeeeeccccccCceEEEEEcCCCCEEEEE---EC
Q 001403 518 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-G---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA---GD 590 (1084)
Q Consensus 518 ~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~-~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~ 590 (1084)
..-...|...+|-|.|..+++.+... ...++..|.+++ . +.+..+.. ...+.+.|+|.|++++.+ |.
T Consensus 442 velke~vi~FaWEP~gdkF~vi~g~~-~k~tvsfY~~e~~~~~~~lVk~~dk-----~~~N~vfwsPkG~fvvva~l~s~ 515 (698)
T KOG2314|consen 442 VELKESVIAFAWEPHGDKFAVISGNT-VKNTVSFYAVETNIKKPSLVKELDK-----KFANTVFWSPKGRFVVVAALVSR 515 (698)
T ss_pred eecchheeeeeeccCCCeEEEEEccc-cccceeEEEeecCCCchhhhhhhcc-----cccceEEEcCCCcEEEEEEeccc
Confidence 33445788999999999988776533 366788887763 2 22233322 457889999999999885 46
Q ss_pred CCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEEC------CCeEEEEEcCC
Q 001403 591 DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKILETPE 645 (1084)
Q Consensus 591 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iwd~~~ 645 (1084)
.|.+.++|+.......+-. ..+ ...+.+.|.|.|+++++++. |..-++|+...
T Consensus 516 ~g~l~F~D~~~a~~k~~~~-~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 516 RGDLEFYDTDYADLKDTAS-PEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred ccceEEEecchhhhhhccC-ccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 7999999987533222211 122 23577999999999999876 44456666653
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.6e-11 Score=118.60 Aligned_cols=155 Identities=12% Similarity=0.190 Sum_probs=108.2
Q ss_pred EEEEEcCCCCcEEEEEeC----------CCeEEEEEcCC-ceeeeeecc-cccCEEEEEEcCCCCEEEEE--eCCCcEEE
Q 001403 839 TSLAFNPHDNNVIAIGMD----------DSTILIYNARS-SEVISKLEG-HSKRVTGLVFSDALNILVSS--GGDAQIFV 904 (1084)
Q Consensus 839 ~~l~~s~~d~~~la~g~~----------dg~i~iwd~~~-~~~~~~l~~-h~~~V~~l~~spd~~~l~s~--s~dg~I~i 904 (1084)
..+.|+| .|.+|++-.. -|...+|.++. +..+..+.- ..++|.+++|+|+|+.+|.. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4678888 6665554332 13455555532 233444432 34579999999999987654 35679999
Q ss_pred EeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEe----CCeEEEEEcCCcceeeEeecCCCCCEEEEEEcc
Q 001403 905 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAEELTCLKQWFPISSVPISQATFSC 980 (1084)
Q Consensus 905 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~----d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~ 980 (1084)
||++. + .+..... ..+..+.|||+|++|++++ .|.|.+||+.+.+.+.... ...++.++|||
T Consensus 88 yd~~~-~-----~i~~~~~-----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---~~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVKG-K-----KIFSFGT-----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---HSDATDVEWSP 153 (194)
T ss_pred EcCcc-c-----EeEeecC-----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---cCcEEEEEEcC
Confidence 99973 1 1222221 1467899999999999952 4679999999888877632 34578999999
Q ss_pred CCCEEEEEeC------CCcEEEEEcCCCceeEEec
Q 001403 981 DCRMVFTSFV------DGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 981 dg~~l~t~~~------dg~i~vwd~~~~~~~~~~~ 1009 (1084)
||+++++++. |+.++||+.. |+++.+..
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9999999875 7889999985 66665443
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.6e-09 Score=116.77 Aligned_cols=269 Identities=14% Similarity=0.223 Sum_probs=172.2
Q ss_pred ceEEEEEcC--CccccceeeeecCCCCCeEEEEEcCCCCEEEEEeC----CCEEEEEEccCC-ccccceeeeecccccEe
Q 001403 365 RNFKVWDIG--ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----KHIVQLYAYHGG-SDARQQLEIDAHVGNVN 437 (1084)
Q Consensus 365 ~~v~iwd~~--~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~----dg~v~iwd~~~~-~~~~~~~~l~~h~~~V~ 437 (1084)
+.|.+|++. ++....... .........++++|++++|.+... ++.|..|++... ..+..+...........
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~--~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~ 90 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQT--VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC 90 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEE--EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE
T ss_pred CcEEEEEEcCCCCCceEeee--ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE
Confidence 677888773 333222221 113356777999999999999876 568999998874 33333333333344567
Q ss_pred EEEeecCCCcEEEEEEe-CCCcEEEEECCC-CceeeE---ec----------cCCCcEEEEeecccCCCcEEEEEec-CC
Q 001403 438 DLAFSAPCKQISVITCG-DDKTIKVWDAVT-GSRTYS---FE----------GHGAPVYSLCPHAKENIHFIFSISV-DG 501 (1084)
Q Consensus 438 ~l~~s~d~~~l~l~s~~-~d~~i~vwd~~~-g~~~~~---~~----------~h~~~v~~~~~~~~~~~~~l~s~s~-dg 501 (1084)
.++++|+++ +++++. .+|+|.++++.. |..... +. .......++.++ ++++++++... ..
T Consensus 91 ~i~~~~~g~--~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~--pdg~~v~v~dlG~D 166 (345)
T PF10282_consen 91 HIAVDPDGR--FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS--PDGRFVYVPDLGAD 166 (345)
T ss_dssp EEEECTTSS--EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE---TTSSEEEEEETTTT
T ss_pred EEEEecCCC--EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC--CCCCEEEEEecCCC
Confidence 899999999 455544 589999999986 443322 11 122446777884 46677766543 45
Q ss_pred eEEEEECCCCCceE----e-ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCC--CceE--eeeeecc---ccc
Q 001403 502 KIKAWLYDSLGARV----D-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI--KRTYQGL---QLQ 569 (1084)
Q Consensus 502 ~i~iwd~~~~~~~~----~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~--~~~~--~~~~~~~---~~~ 569 (1084)
.|.+|+++...... . ....+.....++|+|+++++++... ..+.|.++++. ++.. +...... ...
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 243 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTG 243 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccc
Confidence 79999998766211 1 2344557889999999999988764 36668888877 4432 2222221 111
Q ss_pred cCceEEEEEcCCCCEEEEEE-CCCcEEEEECC--CCeE--EEEEcCCCCCCCcceEEEecCCCEEEEEEC-CCeEEEEEc
Q 001403 570 HNSVSVVHFDTAKDQILAAG-DDHVIKIWDMN--KVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIAN-ENRIKILET 643 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~ 643 (1084)
......++++||+++|+++. ..+.|.+|++. ++.+ +..+...+. ....++++|+|++|+++.. ++.|.+|++
T Consensus 244 ~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 244 ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 12578899999999988865 66789999983 3433 334443222 3578999999999998875 678999977
Q ss_pred C
Q 001403 644 P 644 (1084)
Q Consensus 644 ~ 644 (1084)
.
T Consensus 322 d 322 (345)
T PF10282_consen 322 D 322 (345)
T ss_dssp E
T ss_pred e
Confidence 4
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-10 Score=132.03 Aligned_cols=244 Identities=10% Similarity=0.026 Sum_probs=149.7
Q ss_pred cCCCccceeeecccCCCCceEEEEcCCCceeee--ecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEE
Q 001403 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLL--GLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 396 (1084)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las--~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f 396 (1084)
+.+......+.|..+...+..-+|||||+.++. .+.. .|. ..|.+.++.++..... ....+.....+|
T Consensus 169 ~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~--~g~----~~I~~~~l~~g~~~~l----t~~~g~~~~p~w 238 (428)
T PRK01029 169 SVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYK--LGV----PKIFLGSLENPAGKKI----LALQGNQLMPTF 238 (428)
T ss_pred EEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEcc--CCC----ceEEEEECCCCCceEe----ecCCCCccceEE
Confidence 344444445556666667788999999986432 2221 232 6788888877654322 223445567899
Q ss_pred cCCCCEEEEEeC-----CCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEE-eCCCcEEEE--ECCC-C
Q 001403 397 SPDGSLLGVAYS-----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVW--DAVT-G 467 (1084)
Q Consensus 397 spdg~~las~~~-----dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~-~~d~~i~vw--d~~~-g 467 (1084)
||||+.||..+. +-.+.+|++.++..-.......++.+.....+|+|||+. |+.. ..++...+| ++.. +
T Consensus 239 SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~--Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 239 SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR--LVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE--EEEEECCCCCceEEEEECcccc
Confidence 999999998753 223455777653211111112223344567899999994 4433 345655555 4432 3
Q ss_pred ceeeEeccCCCcEEEEeecccCCCcEEEEEecC---CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001403 468 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 544 (1084)
Q Consensus 468 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 544 (1084)
.....+..+...+....|+| ||+.|+..+.+ ..|.+||+.+++..... .....+....|+|||+.|+..... .
T Consensus 317 ~~~~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~-~ 392 (428)
T PRK01029 317 QSPRLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGN-S 392 (428)
T ss_pred cceEEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECC-C
Confidence 33455555555666778854 67777766543 36899999877654433 223456778999999998876543 3
Q ss_pred CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCC
Q 001403 545 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 582 (1084)
Q Consensus 545 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 582 (1084)
+...|+++|+.+++....... . +.+...+|+|-.
T Consensus 393 g~~~L~~vdl~~g~~~~Lt~~-~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 393 NESELYLISLITKKTRKIVIG-S---GEKRFPSWGAFP 426 (428)
T ss_pred CCceEEEEECCCCCEEEeecC-C---CcccCceecCCC
Confidence 466799999988776554432 2 456667787743
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.1e-11 Score=117.49 Aligned_cols=342 Identities=14% Similarity=0.203 Sum_probs=215.7
Q ss_pred EeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEE-CCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCe
Q 001403 559 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 637 (1084)
Q Consensus 559 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 637 (1084)
.++.++|+. +.++....-|-..-+++.+.|.+++||- .+.++.-..+.. .....+.++.+.++...|++|-..|+
T Consensus 16 ll~~~eG~~---d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 16 LLSKIEGSQ---DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred hhhhhcCch---hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecce
Confidence 455677777 7788888888888999999999999994 444554444332 22345789999999999999999998
Q ss_pred EEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCcccee
Q 001403 638 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 717 (1084)
Q Consensus 638 i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 717 (1084)
+.-+.....- + +. ..+|.|
T Consensus 92 vtefs~sedf-----------------n-------------------------km-------~~~r~~------------ 110 (404)
T KOG1409|consen 92 VTEFALSEDF-----------------N-------------------------KM-------TFLKDY------------ 110 (404)
T ss_pred EEEEEhhhhh-----------------h-------------------------hc-------chhhhh------------
Confidence 8776554210 0 00 001111
Q ss_pred eccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCc
Q 001403 718 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 797 (1084)
Q Consensus 718 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 797 (1084)
..|...+..+.|+.....+++.+.|..+. |-... .+..+-... .....
T Consensus 111 -----~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e---------------------~~~~lg~Y~-----~~~~~ 158 (404)
T KOG1409|consen 111 -----LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTE---------------------SGNRLGGYN-----FETPA 158 (404)
T ss_pred -----hhhhcceeeEEecCCceeEEEeccccceE-EEeec---------------------cCCcccceE-----eeccC
Confidence 12677888888888888888888875443 22111 111000000 00111
Q ss_pred cEEEecCCCCEEEEEe-CCeEEEEEc--CCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee-eee
Q 001403 798 PCFALSKNDAYLFSAS-GGVISLYIV--MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISK 873 (1084)
Q Consensus 798 ~~l~~s~dg~~l~~~s-dg~i~vwd~--~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~-~~~ 873 (1084)
+++.+.-. +...|. .|.|.+-.+ +....+.++.+|.+.+++++|.+ ..++|.+|..|..+.+||+.-.+- ...
T Consensus 159 t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~e 235 (404)
T KOG1409|consen 159 SALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYE 235 (404)
T ss_pred CCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeee
Confidence 11111111 333333 355444433 45677889999999999999999 889999999999999999986543 467
Q ss_pred ecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeee-----eecC--------------------CCCc-cC
Q 001403 874 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS-----LQTP--------------------DGVM-TL 927 (1084)
Q Consensus 874 l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~-----~~~~--------------------~~~~-~~ 927 (1084)
+.+|.+.|..+...+--+.|.+++.||.|.+|+.+........- .+.. ..|- .-
T Consensus 236 l~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkc 315 (404)
T KOG1409|consen 236 LQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKC 315 (404)
T ss_pred eccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 88999999999999888999999999999999998643222100 0000 0000 00
Q ss_pred CCCceEEEEccCCCEEEEEeCCeEEEEEcCCcc-------eeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001403 928 APSETHIQFHKDQTRFLLVHETHLAIYEAEELT-------CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 928 ~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~-------~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~ 1000 (1084)
...+...+-|.-..+...+.+-.+++.|.-... .+..+-.. ...|+.+.+-.+-.+|+|++.|..|+|||+.
T Consensus 316 g~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei-~tgItamhlqetlglLvTsG~~Rvi~iwd~~ 394 (404)
T KOG1409|consen 316 GKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEI-KTGITAMHLQETLGLLVTSGTDRVIKIWDVR 394 (404)
T ss_pred hhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccc-ccceeEEEhhhhccceeecCCceEEEEEech
Confidence 011222222222333333555566666542211 12221111 4578899998888899999999999999987
Q ss_pred C
Q 001403 1001 N 1001 (1084)
Q Consensus 1001 ~ 1001 (1084)
.
T Consensus 395 ~ 395 (404)
T KOG1409|consen 395 S 395 (404)
T ss_pred h
Confidence 5
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-09 Score=106.95 Aligned_cols=255 Identities=13% Similarity=0.200 Sum_probs=174.4
Q ss_pred CCCCccEEEecCCCCEEEEEe----CCeEEEEEcCC--ceeE--EEEcCCCCCeEEEEEcCCCCcEEEEEeC-CCeEEEE
Q 001403 793 SQEAVPCFALSKNDAYLFSAS----GGVISLYIVMT--FKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMD-DSTILIY 863 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~s----dg~i~vwd~~~--~~~~--~~~~~~~~~i~~l~~s~~d~~~la~g~~-dg~i~iw 863 (1084)
....++-++++|+++.|.++. .|.|..|.++. |+.. ........+.+.+++++ ++++|+++.. .|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 567788999999999998875 36788887764 4432 22222334448999999 8989888875 5799999
Q ss_pred EcCC-ceee--eeecccccC----------EEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCceeeeeeeecCCCCccCC
Q 001403 864 NARS-SEVI--SKLEGHSKR----------VTGLVFSDALNILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 928 (1084)
Q Consensus 864 d~~~-~~~~--~~l~~h~~~----------V~~l~~spd~~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 928 (1084)
-+.. |.+. .....|.+. +-...|.|++++|++.+ .|+ |.+|+++.|............|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence 9865 4332 122235554 88899999999999874 455 9999999877555443333222
Q ss_pred CCceEEEEccCCCEEEEE--eCCeEEEEEcCCc-ceeeEeec------C--CCCCEEEEEEccCCCEEEEEeC-CCcEEE
Q 001403 929 PSETHIQFHKDQTRFLLV--HETHLAIYEAEEL-TCLKQWFP------I--SSVPISQATFSCDCRMVFTSFV-DGTLSI 996 (1084)
Q Consensus 929 ~~v~~~~~s~dg~~la~~--~d~~i~vwd~~~~-~~~~~~~~------~--h~~~v~~l~fs~dg~~l~t~~~-dg~i~v 996 (1084)
.....+.|+|++++..+. -+++|.+|..... ..+..+.. . -.....+|..++||++|.++.. ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 357899999999998874 5789999998863 22222111 1 1567788999999999997643 236777
Q ss_pred EEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCC-cEEEEcCCCCCCCccc
Q 001403 997 HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-EVYVIEPNEPGDTWAV 1061 (1084)
Q Consensus 997 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg-~v~vw~~~~~~~~~~~ 1061 (1084)
+.+....-.-.+. .+.+ ....+|..+.++| +|++|+++..++ +|.++.+...-++...
T Consensus 271 f~V~~~~g~L~~~--~~~~----teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 271 FSVDPDGGKLELV--GITP----TEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EEEcCCCCEEEEE--EEec----cCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 7776542221121 1111 1235677788998 478888877765 7999999887765543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-10 Score=128.19 Aligned_cols=243 Identities=12% Similarity=0.085 Sum_probs=150.3
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEE---EEeCC--CEEEEEEccCCccccceeeeecccccEeEE
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG---VAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDL 439 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la---s~~~d--g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l 439 (1084)
..|.+.|........ +......+..-+|||||+.++ +...+ ..|.+.++.+|+..+ +....+.....
T Consensus 165 ~~l~~~d~dG~~~~~----lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p 236 (428)
T PRK01029 165 GELWSVDYDGQNLRP----LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMP 236 (428)
T ss_pred ceEEEEcCCCCCceE----cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccce
Confidence 567777766543321 233455677889999998633 33333 358888988876432 33344556678
Q ss_pred EeecCCCcEEEEEEeC----CCcEEEEECCCC---ceeeEeccCCCcEEEEeecccCCCcEEEEEe-cCCeEEEEEC--C
Q 001403 440 AFSAPCKQISVITCGD----DKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLY--D 509 (1084)
Q Consensus 440 ~~s~d~~~l~l~s~~~----d~~i~vwd~~~g---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~iwd~--~ 509 (1084)
+|||||+.+ +++... +-.+.+|++.++ .......++.......+| ++||+.|+..+ .+|...+|.+ +
T Consensus 237 ~wSPDG~~L-af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf~s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 237 TFSPRKKLL-AFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVFVSNKDGRPRIYIMQID 313 (428)
T ss_pred EECCCCCEE-EEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEEEECCCCCceEEEEECc
Confidence 999999953 233322 323455777653 322222233334456677 45777776655 5676566644 3
Q ss_pred C-CCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEE
Q 001403 510 S-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 588 (1084)
Q Consensus 510 ~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 588 (1084)
. +.....+......+....|+|||+.|+..+.. .+...|++||+.+++....... . ..+....|+|||+.|+..
T Consensus 314 ~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~---~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 314 PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P---ENKESPSWAIDSLHLVYS 388 (428)
T ss_pred ccccceEEeccCCCCccceeECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C---CCccceEECCCCCEEEEE
Confidence 2 22233344444566788999999999987643 3456799999998877544332 2 346678999999988865
Q ss_pred EC---CCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCC
Q 001403 589 GD---DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 626 (1084)
Q Consensus 589 ~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 626 (1084)
+. ...|+++|+.+++........+ .+...+|+|-.
T Consensus 389 ~~~~g~~~L~~vdl~~g~~~~Lt~~~g---~~~~p~Ws~~~ 426 (428)
T PRK01029 389 AGNSNESELYLISLITKKTRKIVIGSG---EKRFPSWGAFP 426 (428)
T ss_pred ECCCCCceEEEEECCCCCEEEeecCCC---cccCceecCCC
Confidence 43 3578899998887655554322 25567888743
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-10 Score=114.56 Aligned_cols=356 Identities=14% Similarity=0.206 Sum_probs=213.8
Q ss_pred cccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc-----eeeEeccCC------------CcEEEEeecccCCCcEEE
Q 001403 433 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHG------------APVYSLCPHAKENIHFIF 495 (1084)
Q Consensus 433 ~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~-----~~~~~~~h~------------~~v~~~~~~~~~~~~~l~ 495 (1084)
..-|.++.|...|. +|++|..+|.|.++.-+... ....++.|. ..|..+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 35688999999999 89999999999999744222 223444454 357778888888888888
Q ss_pred EEecCCeEEEEECCCCCceEe-----ecCCCCeEEEEEE---cCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeee-cc
Q 001403 496 SISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-GL 566 (1084)
Q Consensus 496 s~s~dg~i~iwd~~~~~~~~~-----~~~~~~~i~~~~~---s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~ 566 (1084)
....|.+|++|.+........ .......++++.. .+-...+. ..+.+.+. .|
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-------------------a~prRv~aNaH 163 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-------------------ASPRRVYANAH 163 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-------------------eeeeeeccccc
Confidence 899999999998875443331 1111122222221 11111111 11222332 23
Q ss_pred ccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC-eEEEEEcCCCC-----CCCcceEEEec-CCCEEEEEECCCeEE
Q 001403 567 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGG-----LPENPRICFNK-NGTLLAVIANENRIK 639 (1084)
Q Consensus 567 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~-----~~~v~~v~~s~-~~~~l~~~~~dg~i~ 639 (1084)
. ..|.++.++.|...++++ +|=.|.+|+++-- +....+..... ...|++..|+| ..+.++..+..|+|+
T Consensus 164 t---yhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 164 T---YHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred e---eEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 3 779999999999888876 4678999998642 22222221111 12367788999 456778888899999
Q ss_pred EEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeec
Q 001403 640 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL 719 (1084)
Q Consensus 640 iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~ 719 (1084)
+.|+......... -+++...
T Consensus 240 LcDmR~~aLCd~h-------------------------------------------------sKlfEep----------- 259 (433)
T KOG1354|consen 240 LCDMRQSALCDAH-------------------------------------------------SKLFEEP----------- 259 (433)
T ss_pred Eeechhhhhhcch-------------------------------------------------hhhhccc-----------
Confidence 9998854221110 0011000
Q ss_pred cCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccE
Q 001403 720 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 799 (1084)
Q Consensus 720 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 799 (1084)
. .|..+. ... +--..|..
T Consensus 260 --e------------dp~~rs------------------------------------------ffs------eiIsSISD 277 (433)
T KOG1354|consen 260 --E------------DPSSRS------------------------------------------FFS------EIISSISD 277 (433)
T ss_pred --c------------CCcchh------------------------------------------hHH------HHhhhhhc
Confidence 0 000000 000 12345778
Q ss_pred EEecCCCCEEEEEeCCeEEEEEc-CCceeEEEEcCCC------------CC---eEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001403 800 FALSKNDAYLFSASGGVISLYIV-MTFKTILTIMPPS------------PT---ATSLAFNPHDNNVIAIGMDDSTILIY 863 (1084)
Q Consensus 800 l~~s~dg~~l~~~sdg~i~vwd~-~~~~~~~~~~~~~------------~~---i~~l~~s~~d~~~la~g~~dg~i~iw 863 (1084)
+.|+++|+|+++-+--+|++||+ ...+++.+++-|. .. -..++|+. ++.++++|+....+++|
T Consensus 278 vKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf 356 (433)
T KOG1354|consen 278 VKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVF 356 (433)
T ss_pred eEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEe
Confidence 89999999999888889999998 4556666655443 12 25678988 78899999999999999
Q ss_pred EcCCceee-eeecccccC--EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCC
Q 001403 864 NARSSEVI-SKLEGHSKR--VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 940 (1084)
Q Consensus 864 d~~~~~~~-~~l~~h~~~--V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 940 (1084)
++..|... .++...... ...+ ..-+.+.+++......+|-.. .+-. ..+...+|.|..
T Consensus 357 ~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd~------------ldf~----kkilh~aWhp~e 417 (433)
T KOG1354|consen 357 NLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVDA------------LDFR----KKILHTAWHPKE 417 (433)
T ss_pred cCCCCcceeecccccccCCccccc---ccceeeecCCCccccccccch------------hhhh----hHHHhhccCCcc
Confidence 98766432 333322211 1111 112334444444332221100 0000 136778999999
Q ss_pred CEEEEEeCCeEEEEE
Q 001403 941 TRFLLVHETHLAIYE 955 (1084)
Q Consensus 941 ~~la~~~d~~i~vwd 955 (1084)
..+|++.-+.++++.
T Consensus 418 n~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 418 NSIAVAATNNLYIFQ 432 (433)
T ss_pred ceeeeeecCceEEec
Confidence 999998877787763
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.9e-09 Score=112.47 Aligned_cols=281 Identities=11% Similarity=0.067 Sum_probs=178.9
Q ss_pred eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEEC----------CCcEEEEECCCCeEEEEEcCCCC---
Q 001403 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLLTTIDAGGG--- 613 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~--- 613 (1084)
+.|.+.|..+++.+..+..-. . ...+ ++||++.++++.. +..|.+||..+++.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~---~-P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF---L-PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC---C-Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 669999999999988887644 2 2334 9999999988654 78999999999999999876433
Q ss_pred --CCCcceEEEecCCCEEEEEE-C-CCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCC
Q 001403 614 --LPENPRICFNKNGTLLAVIA-N-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED 689 (1084)
Q Consensus 614 --~~~v~~v~~s~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~ 689 (1084)
......++++|||+++++.. . ++.+.+.|+.+++.+..+.. |.+..+...+......+ +.|
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-----------p~~~~vy~t~e~~~~~~----~~D 166 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-----------PDCYHIFPTANDTFFMH----CRD 166 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-----------CCCcEEEEecCCccEEE----eec
Confidence 12234789999999998776 3 68999999999988876654 22233322222222222 234
Q ss_pred CCccc-eecccCccccccceeecCccceeeccCCccccceEEEEEEec-CCCeEEEeecCCceEEeeccCCccCcCcccc
Q 001403 690 VKPEI-SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEAT 767 (1084)
Q Consensus 690 ~~~l~-~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 767 (1084)
|.++. +-+.+|+...-....-..... +. ...+ .|++ +|+++.++.. |.+.+-|+......
T Consensus 167 g~~~~v~~d~~g~~~~~~~~vf~~~~~-----~v--~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~------ 228 (352)
T TIGR02658 167 GSLAKVGYGTKGNPKIKPTEVFHPEDE-----YL--INHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAK------ 228 (352)
T ss_pred CceEEEEecCCCceEEeeeeeecCCcc-----cc--ccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcce------
Confidence 44332 223333322111000000000 00 0111 4466 7877777766 99999886543210
Q ss_pred eecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-----------CCeEEEEEcCCceeEEEEcCCCC
Q 001403 768 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-----------GGVISLYIVMTFKTILTIMPPSP 836 (1084)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-----------dg~i~vwd~~~~~~~~~~~~~~~ 836 (1084)
....|...+-.... ..-......-++++++++.+.+.. .+.|.++|..+++.+..+.. ..
T Consensus 229 ---~~~~~~~~~~~~~~-----~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~ 299 (352)
T TIGR02658 229 ---FLPAIEAFTEAEKA-----DGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GH 299 (352)
T ss_pred ---ecceeeeccccccc-----cccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CC
Confidence 11222221111000 000233344599999999888742 25799999999999998874 45
Q ss_pred CeEEEEEcCCCCc-EEEEEe-CCCeEEEEEcCCceeeeeec
Q 001403 837 TATSLAFNPHDNN-VIAIGM-DDSTILIYNARSSEVISKLE 875 (1084)
Q Consensus 837 ~i~~l~~s~~d~~-~la~g~-~dg~i~iwd~~~~~~~~~l~ 875 (1084)
.+..++++| |++ +|++.. .++.|.++|..+++.+..+.
T Consensus 300 ~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 300 EIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred ceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 789999999 777 777665 57889999999999988873
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-10 Score=116.10 Aligned_cols=158 Identities=18% Similarity=0.397 Sum_probs=111.3
Q ss_pred eEEEEcCCCceeeeecc-cc-cCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe--CCCEEE
Q 001403 338 MSMDFHPVQHTLLLGLW-DV-NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY--SKHIVQ 413 (1084)
Q Consensus 338 ~~v~~spdg~~las~~~-d~-~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~--~dg~v~ 413 (1084)
..+.|+|+|.+|+.-.. +. .+++. .-+...||.+...........+ ...++|.+++|+|+|+.+|+.. .++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks-~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKS-YYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcce-EEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 46889999999998443 21 23332 2366778877544333322112 2345799999999999987764 567899
Q ss_pred EEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC---CCcEEEEECCCCceeeEeccCCCcEEEEeecccCC
Q 001403 414 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD---DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 490 (1084)
Q Consensus 414 iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~---d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~ 490 (1084)
+||++ ++.+. .+ +...+..+.|||+|+ ++++++. .|.|.+||+++.+.+.+.. |. .+..++| +++
T Consensus 87 lyd~~-~~~i~---~~--~~~~~n~i~wsP~G~--~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~W--sPd 154 (194)
T PF08662_consen 87 LYDVK-GKKIF---SF--GTQPRNTISWSPDGR--FLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEW--SPD 154 (194)
T ss_pred EEcCc-ccEeE---ee--cCCCceEEEECCCCC--EEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEE--cCC
Confidence 99997 33222 33 356788999999999 6777654 4679999999988887775 33 3678888 557
Q ss_pred CcEEEEEec------CCeEEEEECC
Q 001403 491 IHFIFSISV------DGKIKAWLYD 509 (1084)
Q Consensus 491 ~~~l~s~s~------dg~i~iwd~~ 509 (1084)
|++++++.. |..++||++.
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEec
Confidence 889998864 6778889875
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-09 Score=124.19 Aligned_cols=215 Identities=15% Similarity=0.134 Sum_probs=143.4
Q ss_pred EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC---CcEEEEECCCCceeeEeccCCCcEEEEeecc
Q 001403 411 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD---KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 487 (1084)
Q Consensus 411 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d---~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~ 487 (1084)
.|.++|..++. .+ .+..+...+...+|+|||+ .++.+..+ ..|.+||+.+++... +..+...+.+++|++
T Consensus 171 ~l~~~d~~g~~-~~---~l~~~~~~~~~p~~Spdg~--~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~sp 243 (417)
T TIGR02800 171 ELQVADYDGAN-PQ---TITRSREPILSPAWSPDGQ--KLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSP 243 (417)
T ss_pred eEEEEcCCCCC-CE---EeecCCCceecccCCCCCC--EEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECC
Confidence 58888886543 22 4556777799999999999 45544432 479999999886543 334555666778854
Q ss_pred cCCCcEEE-EEecCC--eEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeee
Q 001403 488 KENIHFIF-SISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 564 (1084)
Q Consensus 488 ~~~~~~l~-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 564 (1084)
||+.|+ +.+.++ .|.+|++.++.... +..+........|+|||+.|+..+. ..+...|+++|+.+++... +.
T Consensus 244 --Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~-~~g~~~iy~~d~~~~~~~~-l~ 318 (417)
T TIGR02800 244 --DGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSD-RGGSPQIYMMDADGGEVRR-LT 318 (417)
T ss_pred --CCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEEC-CCCCceEEEEECCCCCEEE-ee
Confidence 666554 555554 48888887654432 3333334456789999999987763 2335579999988776543 33
Q ss_pred ccccccCceEEEEEcCCCCEEEEEECCC---cEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCC---eE
Q 001403 565 GLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN---RI 638 (1084)
Q Consensus 565 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---~i 638 (1084)
.+. .......|+|++++++.++.++ .|.+||+.++.... +.... ......|+|||+.|+..+.++ .+
T Consensus 319 ~~~---~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~---~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 319 FRG---GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDTG---LDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred cCC---CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCCC---CCCCceECCCCCEEEEEEeCCCcEEE
Confidence 222 4567788999999999988765 78999998865433 32221 234568999999988877754 34
Q ss_pred EEEEcC
Q 001403 639 KILETP 644 (1084)
Q Consensus 639 ~iwd~~ 644 (1084)
.+.+..
T Consensus 392 ~~~~~~ 397 (417)
T TIGR02800 392 GLVSTD 397 (417)
T ss_pred EEEECC
Confidence 555533
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-10 Score=131.74 Aligned_cols=235 Identities=13% Similarity=0.089 Sum_probs=149.1
Q ss_pred CCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCC
Q 001403 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 400 (1084)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg 400 (1084)
+......+.+..+.+.+...+|||||++||..+.+ .+ ...|.+||+.++.... +....+.+...+|||||
T Consensus 185 d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~--~~----~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG 254 (430)
T PRK00178 185 DYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFE--QK----RPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDG 254 (430)
T ss_pred CCCCCCceEEecCCCceeeeeECCCCCEEEEEEcC--CC----CCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCC
Confidence 33344456666777789999999999999986554 12 1578999998765432 22233445679999999
Q ss_pred CEEEEE-eCCC--EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCC--cEEEEECCCCceeeEecc
Q 001403 401 SLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEG 475 (1084)
Q Consensus 401 ~~las~-~~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~--~i~vwd~~~g~~~~~~~~ 475 (1084)
++|+.. ..++ .|.+||+.+++.. .+..+........|+|||+.+ +++...++ .|.++|+.+++... +..
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~i-~f~s~~~g~~~iy~~d~~~g~~~~-lt~ 328 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRTL-YFTSDRGGKPQIYKVNVNGGRAER-VTF 328 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCEE-EEEECCCCCceEEEEECCCCCEEE-eec
Confidence 999854 3444 5888899887532 344555667778999999952 33333333 57788888876432 221
Q ss_pred CCCcEEEEeecccCCCcEEEEEecC-C--eEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEe
Q 001403 476 HGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 552 (1084)
Q Consensus 476 h~~~v~~~~~~~~~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~w 552 (1084)
.........|+ ++|+.++..+.+ + .|.+||+.+++...... . .......|+|||+.++..+.. .+...++++
T Consensus 329 ~~~~~~~~~~S--pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-~-~~~~~p~~spdg~~i~~~~~~-~g~~~l~~~ 403 (430)
T PRK00178 329 VGNYNARPRLS--ADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD-T-SLDESPSVAPNGTMLIYATRQ-QGRGVLMLV 403 (430)
T ss_pred CCCCccceEEC--CCCCEEEEEEccCCceEEEEEECCCCCEEEccC-C-CCCCCceECCCCCEEEEEEec-CCceEEEEE
Confidence 22222345664 466777766543 3 47788888765433222 1 222356899999999887753 345668888
Q ss_pred cCCCceEeeeeeccccccCceEEEEEcC
Q 001403 553 NESEGAIKRTYQGLQLQHNSVSVVHFDT 580 (1084)
Q Consensus 553 d~~~~~~~~~~~~~~~~~~~v~~~~~s~ 580 (1084)
+... ...+.+..+. +.+...+|+|
T Consensus 404 ~~~g-~~~~~l~~~~---g~~~~p~ws~ 427 (430)
T PRK00178 404 SING-RVRLPLPTAQ---GEVREPSWSP 427 (430)
T ss_pred ECCC-CceEECcCCC---CCcCCCccCC
Confidence 8754 3334444333 4566666766
|
|
| >KOG2659 consensus LisH motif-containing protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=118.55 Aligned_cols=167 Identities=21% Similarity=0.287 Sum_probs=121.7
Q ss_pred chhHHHHHHHHHhhhhcChHHHHHHHHHhcCCChh---------HHHHHHHhcCcCHHHHHHHhcccc--cccCccccch
Q 001403 3 KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFD---------MKFFEDMILDGKWEDVEQYLSSFT--KVDDNRYSTK 71 (1084)
Q Consensus 3 ~~~~~~~rli~q~L~~~g~~~s~~~l~~Es~~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~--~~~~~~~~~~ 71 (1084)
..++|+-|||+.||-.+||.++|+.+.+|+|+..+ -..+|.+|..|+-++|++.+..+. .++.+ ..
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n---~~ 100 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN---RE 100 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc---hh
Confidence 45789999999999999999999999999999762 578999999999999999999872 23333 23
Q ss_pred hhhHHHHhHHHhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcccccc---chhccccccCCChHHHHHHHHHH
Q 001403 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIR---DHELLSKYYGDALSARKNMMLEL 148 (1084)
Q Consensus 72 ~~~~l~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~---~~~~~~~~~~~~~~~r~~l~~~l 148 (1084)
+.|.+++|+++|++..+...+|+.|+|++|.|+...+++.++.|...|..--++ +.+...-| ....|.++...+
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~---~~s~R~kvA~~v 177 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELL---SQSLRQKVASEV 177 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHH---HHHHHHHHHHHH
Confidence 899999999999999999999999999999999987777766666655542222 11111111 234566666666
Q ss_pred HhhcccCccccccccCCCCcchHHHHHHHHhHHHH
Q 001403 149 KQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQ 183 (1084)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~Q 183 (1084)
...|=..-- . --.++|..||+.-..-|
T Consensus 178 N~aiL~~~~------~--~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 178 NSAILASQE------H--ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHHHHHhc------c--cccchHHHHHHHHHHHH
Confidence 554432111 0 12567888885555444
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-10 Score=131.64 Aligned_cols=234 Identities=15% Similarity=0.096 Sum_probs=146.5
Q ss_pred CccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCC
Q 001403 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 401 (1084)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~ 401 (1084)
......+.+..+...+.+.+|||||++||..+.+ .|. ..|.+||+.++..... ..........+|||||+
T Consensus 205 ~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~--~g~----~~L~~~dl~tg~~~~l----t~~~g~~~~~~wSPDG~ 274 (448)
T PRK04792 205 YDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFE--NRK----AEIFVQDIYTQVREKV----TSFPGINGAPRFSPDGK 274 (448)
T ss_pred CCCCCceEeecCCCcccCceECCCCCEEEEEEec--CCC----cEEEEEECCCCCeEEe----cCCCCCcCCeeECCCCC
Confidence 3344445666677789999999999999987654 222 5789999987654221 11223345789999999
Q ss_pred EEEEE-eCCCE--EEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCC--cEEEEECCCCceeeEeccC
Q 001403 402 LLGVA-YSKHI--VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGH 476 (1084)
Q Consensus 402 ~las~-~~dg~--v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~--~i~vwd~~~g~~~~~~~~h 476 (1084)
.|+.. +.++. |.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++|+.+++... +...
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~ 348 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR-LTFE 348 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-EecC
Confidence 88864 55554 788888877532 34455556778899999995 233333333 57777887776533 3222
Q ss_pred CCcEEEEeecccCCCcEEEEEec-CCe--EEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEec
Q 001403 477 GAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 553 (1084)
Q Consensus 477 ~~~v~~~~~~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd 553 (1084)
.......+|+ +||++|+..+. ++. |.++|++++.... +... .......|+|||+.++..... .+...+++++
T Consensus 349 g~~~~~~~~S--pDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~-~g~~~l~~~~ 423 (448)
T PRK04792 349 GEQNLGGSIT--PDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTY-QGKQVLAAVS 423 (448)
T ss_pred CCCCcCeeEC--CCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEec-CCceEEEEEE
Confidence 2223345674 46667766554 444 4556766655432 2221 122345799999999887653 3456688888
Q ss_pred CCCceEeeeeeccccccCceEEEEEcC
Q 001403 554 ESEGAIKRTYQGLQLQHNSVSVVHFDT 580 (1084)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~v~~~~~s~ 580 (1084)
. +|.....+..+. +.+...+|+|
T Consensus 424 ~-~G~~~~~l~~~~---g~~~~p~Wsp 446 (448)
T PRK04792 424 I-DGRFKARLPAGQ---GEVKSPAWSP 446 (448)
T ss_pred C-CCCceEECcCCC---CCcCCCccCC
Confidence 7 455556665544 4566777776
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.3e-10 Score=127.42 Aligned_cols=238 Identities=15% Similarity=0.109 Sum_probs=149.6
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC---CEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
..+.++|....... .+..+...+.+..|||||++|+..+.+ ..|.+||+.+++... +....+.....+|
T Consensus 198 ~~l~i~d~dG~~~~----~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~w 269 (448)
T PRK04792 198 YQLMIADYDGYNEQ----MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRF 269 (448)
T ss_pred eEEEEEeCCCCCce----EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeE
Confidence 46777777554322 133466788999999999999987543 358899998876322 2222334457899
Q ss_pred ecCCCcEEEEEEeCCCc--EEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEec-CCe--EEEEECCCCCceEe
Q 001403 442 SAPCKQISVITCGDDKT--IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVD 516 (1084)
Q Consensus 442 s~d~~~l~l~s~~~d~~--i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~ 516 (1084)
+|||+. ++++.+.++. |.+||+.+++. ..+..+.......+|++ ||+.++..+. +|. |.++|+.+++...
T Consensus 270 SPDG~~-La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~- 344 (448)
T PRK04792 270 SPDGKK-LALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVSR- 344 (448)
T ss_pred CCCCCE-EEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-
Confidence 999995 3344555664 77889887764 44555555566778854 6666665543 444 5555666554332
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC-C--c
Q 001403 517 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-H--V 593 (1084)
Q Consensus 517 ~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~ 593 (1084)
+..........+|+|||++++..+.. .+...|.++|+.+++....... . ......|+|+|+.|+..+.+ | .
T Consensus 345 Lt~~g~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g~~~~lt~~-~----~d~~ps~spdG~~I~~~~~~~g~~~ 418 (448)
T PRK04792 345 LTFEGEQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETGAMQVLTST-R----LDESPSVAPNGTMVIYSTTYQGKQV 418 (448)
T ss_pred EecCCCCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCCCeEEccCC-C----CCCCceECCCCCEEEEEEecCCceE
Confidence 22222333457899999999887653 2345688889988875432222 1 11234799999998876543 3 3
Q ss_pred EEEEECCCCeEEEEEcCCCCCCCcceEEEec
Q 001403 594 IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 624 (1084)
Q Consensus 594 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 624 (1084)
+++++. +|.....+..... .+...+|+|
T Consensus 419 l~~~~~-~G~~~~~l~~~~g--~~~~p~Wsp 446 (448)
T PRK04792 419 LAAVSI-DGRFKARLPAGQG--EVKSPAWSP 446 (448)
T ss_pred EEEEEC-CCCceEECcCCCC--CcCCCccCC
Confidence 777787 4555555544322 356677776
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-10 Score=114.68 Aligned_cols=251 Identities=10% Similarity=0.132 Sum_probs=181.9
Q ss_pred CCCCeEEEEEcCCCC--EEEEEeCCCEEEEEEccCCccccce---eeeecccccEeEEEeecCCCcEEEEEEeCCCcEEE
Q 001403 387 PGVSVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQ---LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 461 (1084)
Q Consensus 387 h~~~V~~v~fspdg~--~las~~~dg~v~iwd~~~~~~~~~~---~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~v 461 (1084)
....|..++|.-|++ .|...+.+..+..+........... .......++|..++.. || .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 346788888876654 4555546666777777665543321 1223445667777765 44 4888888999999
Q ss_pred EECCCCc----eeeEeccCCCcEEEEeecccCCCcEEEEEecC--CeEEEEECCCCCceEeecCCC---------CeEEE
Q 001403 462 WDAVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD--GKIKAWLYDSLGARVDYDAPG---------LGCTR 526 (1084)
Q Consensus 462 wd~~~g~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~---------~~i~~ 526 (1084)
|..+.+. .+..+..+ ..+..+.-++. ...++++|+.. ..+.+||+...+.++.-.... -+++.
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~-~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDT-DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCC-CCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 9988543 23334333 44555544332 33577779999 889999998875555433221 15678
Q ss_pred EEEcCC--CCEEEEEeeCCCCCeeEEEecCCCc-eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 001403 527 MAYSAN--GRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 603 (1084)
Q Consensus 527 ~~~s~d--~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 603 (1084)
+.|-+. ...+++++. -+.+++||.+.+ +++..+.... .++.++...|+++++++|..-|.+..||.+.++
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E---~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLE---NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEecccc---CcceeeeecCCCcEEEEecccchhheecccCce
Confidence 889887 888999876 667999999865 4566666555 889999999999999999999999999999999
Q ss_pred EEEE-EcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeec
Q 001403 604 LLTT-IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 652 (1084)
Q Consensus 604 ~~~~-~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 652 (1084)
.... +.+- ...+.++..+|.+.++++++-|+.+||+|+.+.+.+...
T Consensus 281 l~g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 281 LLGCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred eeccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 8876 5433 346899999999999999999999999999986655443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.9e-10 Score=130.72 Aligned_cols=221 Identities=19% Similarity=0.173 Sum_probs=145.8
Q ss_pred CCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCC
Q 001403 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 400 (1084)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg 400 (1084)
+......+.+..+...+...+|||||++||....+ .+ ...|.+||+.++.... +..+...+.+++|+|||
T Consensus 176 d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~--~~----~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 176 DYDGANPQTITRSREPILSPAWSPDGQKLAYVSFE--SG----KPEIYVQDLATGQREK----VASFPGMNGAPAFSPDG 245 (417)
T ss_pred cCCCCCCEEeecCCCceecccCCCCCCEEEEEEcC--CC----CcEEEEEECCCCCEEE----eecCCCCccceEECCCC
Confidence 33344456667777789999999999999997554 12 1679999998764332 22355567789999999
Q ss_pred CEEEEE-eCCC--EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC-CC--cEEEEECCCCceeeEec
Q 001403 401 SLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DK--TIKVWDAVTGSRTYSFE 474 (1084)
Q Consensus 401 ~~las~-~~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-d~--~i~vwd~~~g~~~~~~~ 474 (1084)
+.|+.. +.++ .|.+||+.++... .+..+........|+|||+. |+..+. ++ .|.++|+.+++. ..+.
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~~~-~~l~ 318 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGGEV-RRLT 318 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCCCE-EEee
Confidence 988754 3333 5888999886532 34445555667899999994 444432 33 588888877764 3444
Q ss_pred cCCCcEEEEeecccCCCcEEEEEecCC---eEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEE
Q 001403 475 GHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 551 (1084)
Q Consensus 475 ~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~ 551 (1084)
.+...+....|+ ++|.+++.++.++ .|.+||+.+..... +... .......|+|||+.|+..+..+ +...+++
T Consensus 319 ~~~~~~~~~~~s--pdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~-~~~~l~~ 393 (417)
T TIGR02800 319 FRGGYNASPSWS--PDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRG-GRGVLGL 393 (417)
T ss_pred cCCCCccCeEEC--CCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCC-CcEEEEE
Confidence 455556677774 4677888877775 78888887744332 2222 2334568999999998887643 3455666
Q ss_pred ecCCCceEeeeee
Q 001403 552 WNESEGAIKRTYQ 564 (1084)
Q Consensus 552 wd~~~~~~~~~~~ 564 (1084)
.+.. +.....+.
T Consensus 394 ~~~~-g~~~~~~~ 405 (417)
T TIGR02800 394 VSTD-GRFRARLP 405 (417)
T ss_pred EECC-CceeeECC
Confidence 6644 44444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-09 Score=126.01 Aligned_cols=238 Identities=14% Similarity=0.114 Sum_probs=150.3
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC---CEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
..+.++|....... .+..+...+...+|||||++||..+.+ ..|.+||+.+++... +....+.+...+|
T Consensus 179 ~~l~~~d~~g~~~~----~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~ 250 (430)
T PRK00178 179 YTLQRSDYDGARAV----TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAW 250 (430)
T ss_pred eEEEEECCCCCCce----EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEE
Confidence 35777777654321 133466789999999999999887643 469999999886422 3333345567899
Q ss_pred ecCCCcEEEEEEeCCC--cEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEec-CC--eEEEEECCCCCceEe
Q 001403 442 SAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVD 516 (1084)
Q Consensus 442 s~d~~~l~l~s~~~d~--~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~ 516 (1084)
+|||+. ++++.+.++ .|.+||+.++... .+..+........|+ +||+.++..+. +| .|.++++.+++....
T Consensus 251 SpDG~~-la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~s--pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l 326 (430)
T PRK00178 251 SPDGSK-LAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWG--KDGRTLYFTSDRGGKPQIYKVNVNGGRAERV 326 (430)
T ss_pred CCCCCE-EEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 999995 233444444 6888899887653 455555555666774 46666665543 44 466677766554322
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC---Cc
Q 001403 517 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HV 593 (1084)
Q Consensus 517 ~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~ 593 (1084)
...........|+|||+.++..... ++...|.+||+.+++........ ......|+|+|+.++..+.+ ..
T Consensus 327 -t~~~~~~~~~~~Spdg~~i~~~~~~-~~~~~l~~~dl~tg~~~~lt~~~-----~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 327 -TFVGNYNARPRLSADGKTLVMVHRQ-DGNFHVAAQDLQRGSVRILTDTS-----LDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred -ecCCCCccceEECCCCCEEEEEEcc-CCceEEEEEECCCCCEEEccCCC-----CCCCceECCCCCEEEEEEecCCceE
Confidence 2222334457899999999887643 23456999999988654332221 12245899999999886643 34
Q ss_pred EEEEECCCCeEEEEEcCCCCCCCcceEEEec
Q 001403 594 IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 624 (1084)
Q Consensus 594 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 624 (1084)
+++++... .....+....+ .+...+|+|
T Consensus 400 l~~~~~~g-~~~~~l~~~~g--~~~~p~ws~ 427 (430)
T PRK00178 400 LMLVSING-RVRLPLPTAQG--EVREPSWSP 427 (430)
T ss_pred EEEEECCC-CceEECcCCCC--CcCCCccCC
Confidence 77777754 33344433222 355666765
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.9e-10 Score=119.18 Aligned_cols=194 Identities=13% Similarity=0.188 Sum_probs=155.4
Q ss_pred cCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEe------ec------------CCCcEEEEEEeCCCc
Q 001403 397 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SA------------PCKQISVITCGDDKT 458 (1084)
Q Consensus 397 spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~------s~------------d~~~l~l~s~~~d~~ 458 (1084)
.|-+.|+|....||.++|||...++....+.....-.+.-++..| +| .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 456789999999999999999988765433322223334444444 11 122237888888999
Q ss_pred EEEEECCCCceeeEec--cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEE
Q 001403 459 IKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 536 (1084)
Q Consensus 459 i~vwd~~~g~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l 536 (1084)
|.++++..|+...++. .|.+.|.++.++ .+-..|.+++.|+.+..|+.........+......+.+++++|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~--~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDA--QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecc--cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999988885 699999999874 355789999999999999999998888998888899999999999999
Q ss_pred EEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCC-----CCEEEE-EECCCcEEEEECCC
Q 001403 537 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KDQILA-AGDDHVIKIWDMNK 601 (1084)
Q Consensus 537 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~-~~~dg~i~iwd~~~ 601 (1084)
++++. .|.+||+++++.+..|.||. ++|+++.|..+ |.++++ ...+..+.+|-...
T Consensus 160 ~~as~------~ik~~~~~~kevv~~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTASR------QIKVLDIETKEVVITFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eeccc------eEEEEEccCceEEEEecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98853 59999999999999999999 99999999877 677776 44566677886544
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.6e-11 Score=117.29 Aligned_cols=357 Identities=14% Similarity=0.138 Sum_probs=224.5
Q ss_pred eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE--eecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001403 469 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 546 (1084)
Q Consensus 469 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 546 (1084)
.+..++||.+.|+....-+..+ -+++.+.|.++++|--....+.. .......+++++.+.++.+.|+++-. +
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~----n 89 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD----N 89 (404)
T ss_pred hhhhhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe----c
Confidence 4567889999998887766554 59999999999999544333222 12233457899999999999998865 4
Q ss_pred eeEEEecC----CCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEE
Q 001403 547 SFLVEWNE----SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 622 (1084)
Q Consensus 547 ~~i~~wd~----~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 622 (1084)
+.+.-+.+ +.....+.+..|. ..+..+-|+-...++++.+.|..+.---.+.+..+........ ..+..+
T Consensus 90 gtvtefs~sedfnkm~~~r~~~~h~---~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~~ 163 (404)
T KOG1409|consen 90 GTVTEFALSEDFNKMTFLKDYLAHQ---ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQF 163 (404)
T ss_pred ceEEEEEhhhhhhhcchhhhhhhhh---cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCce
Confidence 45655543 3344556666676 8899999998889999999988876555555554433322111 111112
Q ss_pred ecCCCEEEEEECCCeEEEEEcC--CCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccC
Q 001403 623 NKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 700 (1084)
Q Consensus 623 s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 700 (1084)
.-. +..+|...|.+.+..+. .-..+..+.+|.+.+.++.+. +....+.++..|.
T Consensus 164 d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd----------------------~~~~~LfSg~~d~ 219 (404)
T KOG1409|consen 164 DAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD----------------------PGQRLLFSGASDH 219 (404)
T ss_pred eeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc----------------------CCCcEEEeccccC
Confidence 111 55566666776666554 346778889999999999997 4566788999999
Q ss_pred ccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccce-----ecCCeee
Q 001403 701 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT-----KVPPRLY 775 (1084)
Q Consensus 701 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-----~~~~~~~ 775 (1084)
.+.+||+......... ..+|...|..+...+--+.+++++.||.|.+|+++.......+-... -..+..|
T Consensus 220 ~vi~wdigg~~g~~~e-----l~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffw 294 (404)
T KOG1409|consen 220 SVIMWDIGGRKGTAYE-----LQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFW 294 (404)
T ss_pred ceEEEeccCCcceeee-----eccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHH
Confidence 9999998754433322 23578888888888888999999999999999998654433222221 1233444
Q ss_pred cCCCCCccccccCcCC---CCCCCccEEEecCCCCEEEEEeCCeEEEEEcC-------CceeEEEEcCCCCCeEEEEEcC
Q 001403 776 QPRHGPQFMVNDTTDS---NSQEAVPCFALSKNDAYLFSASGGVISLYIVM-------TFKTILTIMPPSPTATSLAFNP 845 (1084)
Q Consensus 776 ~~~~~~~~~~~~~~~~---~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~-------~~~~~~~~~~~~~~i~~l~~s~ 845 (1084)
+...--.....-+... .-...+...+-+.-..+...+..-.+++-|.- +...+..+......|+++.+..
T Consensus 295 n~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqe 374 (404)
T KOG1409|consen 295 NFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE 374 (404)
T ss_pred HHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhh
Confidence 3321110100000000 01112222222222222222323344544431 1122334433446799999988
Q ss_pred CCCcEEEEEeCCCeEEEEEcCC
Q 001403 846 HDNNVIAIGMDDSTILIYNARS 867 (1084)
Q Consensus 846 ~d~~~la~g~~dg~i~iwd~~~ 867 (1084)
.-.+|+|++.|..|+|||+.+
T Consensus 375 -tlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 375 -TLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred -hccceeecCCceEEEEEechh
Confidence 677999999999999999864
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-08 Score=112.99 Aligned_cols=209 Identities=9% Similarity=0.059 Sum_probs=125.1
Q ss_pred eCCeEEEEEcCCceeEEEEcCCCCCe-----EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccc----C---
Q 001403 813 SGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK----R--- 880 (1084)
Q Consensus 813 sdg~i~vwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~----~--- 880 (1084)
.++.+..||.++|+.+..+....... .+..+. ++ .++.+..+|.+..+|..+|+.+........ .
T Consensus 153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~ 229 (377)
T TIGR03300 153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER 229 (377)
T ss_pred CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence 35667777777777665554322211 111222 33 677788899999999999987755431100 0
Q ss_pred EEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcC
Q 001403 881 VTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAE 957 (1084)
Q Consensus 881 V~~l~~sp--d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~ 957 (1084)
...+.-+| .+..+..++.+|.+..||..+|+..-... ... ..... .++..+.+ ..++.++.+|..
T Consensus 230 ~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~---~~~-------~~~p~--~~~~~vyv~~~~G~l~~~d~~ 297 (377)
T TIGR03300 230 LVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD---ASS-------YQGPA--VDDNRLYVTDADGVVVALDRR 297 (377)
T ss_pred hhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec---cCC-------ccCce--EeCCEEEEECCCCeEEEEECC
Confidence 00010111 34577778889999999999886433211 111 11122 23444444 678999999999
Q ss_pred CcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCE
Q 001403 958 ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQ 1037 (1084)
Q Consensus 958 ~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~ 1037 (1084)
+|+.+............+... .+.+|++++.+|.|.++|..+|+.+.++.... ..+... -+.. ++.
T Consensus 298 tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~--------~~~~~s-p~~~---~~~ 363 (377)
T TIGR03300 298 SGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG--------SGIASP-PVVV---GDG 363 (377)
T ss_pred CCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CccccC-CEEE---CCE
Confidence 998876532111112222222 46688999999999999999999998776221 111110 1122 357
Q ss_pred EEEEeCCCcEEEE
Q 001403 1038 FAVGLTNGEVYVI 1050 (1084)
Q Consensus 1038 l~~~~~dg~v~vw 1050 (1084)
|++++.||.|+.|
T Consensus 364 l~v~~~dG~l~~~ 376 (377)
T TIGR03300 364 LLVQTRDGDLYAF 376 (377)
T ss_pred EEEEeCCceEEEe
Confidence 8899999999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-09 Score=107.39 Aligned_cols=294 Identities=14% Similarity=0.120 Sum_probs=173.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCc--cccceeeeeccc------------ccEeEEEeecCCCcEEEEE
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHV------------GNVNDLAFSAPCKQISVIT 452 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~--~~~~~~~l~~h~------------~~V~~l~~s~d~~~l~l~s 452 (1084)
..+-|.+|.|..+|.+||+|..+|.|.++.-+... ...-...+..|. ..|..+.|.+++....++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34678999999999999999999999999754322 111222333443 4688999999887656777
Q ss_pred EeCCCcEEEEECCCCceee-----EeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCce-EeecCCCCeEEE
Q 001403 453 CGDDKTIKVWDAVTGSRTY-----SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTR 526 (1084)
Q Consensus 453 ~~~d~~i~vwd~~~g~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~i~~ 526 (1084)
...|.+|++|-+....... ..++....+.++.. .+.+..|-.+.. .+. .--..|...|.+
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~--------p~~~~~~~~vea------~prRv~aNaHtyhiNS 169 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL--------PVEGRHDLEVEA------SPRRVYANAHTYHINS 169 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeec--------eeeccccceeee------eeeeeccccceeEeee
Confidence 7789999999876433211 11112222333321 111111111110 011 112356668999
Q ss_pred EEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEee---eeecccc--ccCceEEEEEcCCC-CEEEEEECCCcEEEEECC
Q 001403 527 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR---TYQGLQL--QHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMN 600 (1084)
Q Consensus 527 ~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~---~~~~~~~--~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~ 600 (1084)
+.++.|+..++++. +-.|.+|++.--..-. .++.+.. -..-|++..|+|.. +.++-.+..|+|++-|++
T Consensus 170 IS~NsD~Et~lSAD-----dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR 244 (433)
T KOG1354|consen 170 ISVNSDKETFLSAD-----DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMR 244 (433)
T ss_pred eeecCccceEeecc-----ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeech
Confidence 99999999999874 7779999986322111 1111110 01347888899975 556668889999999998
Q ss_pred CCeEE----EEEcCC----------CCCCCcceEEEecCCCEEEEEECCCeEEEEEcC-CCCeeeeccccccceeEEEEc
Q 001403 601 KVQLL----TTIDAG----------GGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVN 665 (1084)
Q Consensus 601 ~~~~~----~~~~~~----------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~ 665 (1084)
...+- +.+... .-...|..+.|+++|+++++-+. -+|++||+. ..+++.+...|...-..+
T Consensus 245 ~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kL--- 320 (433)
T KOG1354|consen 245 QSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKL--- 320 (433)
T ss_pred hhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHH---
Confidence 43221 111111 11234778999999999998755 689999995 445555554432210000
Q ss_pred CCCceeeeeccCc-eeEecCCCCCCCCccceecccCccccccce
Q 001403 666 PISTVTGAGIANG-SVSVNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 666 p~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
.++..+++ .-.|....+.++..+++|+..+..++++..
T Consensus 321 -----c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 321 -----CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred -----HHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence 00000000 000111114567789999999999999854
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-08 Score=112.41 Aligned_cols=183 Identities=13% Similarity=0.059 Sum_probs=111.9
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEE
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 528 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 528 (1084)
.++.++.++.|..+|..+|+.+-+............. ++..++.++.+|.+..+|.++++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 5777888899999999999988766543322222222 345788889999999999998888776554332211112
Q ss_pred EcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCce-----EEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 001403 529 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 603 (1084)
Q Consensus 529 ~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 603 (1084)
. .+..++.+.. ++.++.||.++|+.+..+.... ..+ .+.... +..++.+..+|.+..+|..+|+
T Consensus 143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~---~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVT---PALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCC---CceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCC
Confidence 2 2345555443 6679999999999877765433 111 111111 3467788889999999999998
Q ss_pred EEEEEcCCCCCC--Cc---ceEEEec--CCCEEEEEECCCeEEEEEcCCC
Q 001403 604 LLTTIDAGGGLP--EN---PRICFNK--NGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 604 ~~~~~~~~~~~~--~v---~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
.+.......... .+ ..+.-+| .+..+++++.+|.+..||..++
T Consensus 212 ~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 212 PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 776543221100 00 0000011 2345666666677777766554
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-08 Score=110.27 Aligned_cols=188 Identities=14% Similarity=0.227 Sum_probs=147.1
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCC---CCeEEEEE------cC-------------CCCcEEEEEeCCCeE
Q 001403 804 KNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS---PTATSLAF------NP-------------HDNNVIAIGMDDSTI 860 (1084)
Q Consensus 804 ~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~---~~i~~l~~------s~-------------~d~~~la~g~~dg~i 860 (1084)
|.+.++|... ||.+++|+..+++....+.+.. +..++.+| +| .|...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456777765 7999999999998887776422 23333333 11 145688889999999
Q ss_pred EEEEcCCceeeeeec--ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEcc
Q 001403 861 LIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 938 (1084)
Q Consensus 861 ~iwd~~~~~~~~~l~--~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 938 (1084)
.+|+...|+....+. .|.+.|.++.++.+-..|-|++.|+.+..|+...+. .+........ .+.+++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~~---~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQKP---LVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCCC---ccceEEEcC
Confidence 999999999988886 599999999999999999999999999999999854 3333333322 588999999
Q ss_pred CCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccC-----CCEEEE-EeCCCcEEEEEcCC
Q 001403 939 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-----CRMVFT-SFVDGTLSIHEASN 1001 (1084)
Q Consensus 939 dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~d-----g~~l~t-~~~dg~i~vwd~~~ 1001 (1084)
||+.++++ .++|++||+++++.+.. +.||.++|.++.|..+ |.++++ ...+.-+.+|-+..
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~-ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVIT-FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEE-ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99988875 47899999999998887 7799999999999887 666554 44455688887665
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-08 Score=98.04 Aligned_cols=295 Identities=12% Similarity=0.108 Sum_probs=183.0
Q ss_pred CceEEEEcCCCceeeeecccccCcccc---ccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC---CCC-EEEEEeC
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKL---FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP---DGS-LLGVAYS 408 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~---~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp---dg~-~las~~~ 408 (1084)
++.++.--++ .||+|.++...|++. ..|.+.+|++...+......+..-.+..+..+.|+. +|. .|+-+..
T Consensus 16 ~~C~l~~~~~--vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a 93 (339)
T KOG0280|consen 16 PICCLCHTRN--VLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHA 93 (339)
T ss_pred Cccccccccc--eEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccc
Confidence 3444444444 889988887777332 358899999986554432222222445677777764 555 5666778
Q ss_pred CCEEEEEEccCCccccceeeeeccccc---EeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee--eEeccCCCcEEEE
Q 001403 409 KHIVQLYAYHGGSDARQQLEIDAHVGN---VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT--YSFEGHGAPVYSL 483 (1084)
Q Consensus 409 dg~v~iwd~~~~~~~~~~~~l~~h~~~---V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~--~~~~~h~~~v~~~ 483 (1084)
.|.|.++.....+....+..+..-.-. -.++.|++.+. -++++..+|.+.+-+....... ++++.|..+....
T Consensus 94 ~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta 171 (339)
T KOG0280|consen 94 RGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTA 171 (339)
T ss_pred cceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcEEEEecceeeeeecccccccceeeeee
Confidence 899999987654332221122222222 34678898888 5788888999987665555443 4789999999999
Q ss_pred eecccCCCcEEEEEecCCeEEEEECCCCCc-eEe-ecCCCCeEEEEEEcC-CCCEEEEEeeCCCCCeeEEEecCCC-ceE
Q 001403 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVD-YDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE-GAI 559 (1084)
Q Consensus 484 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~-~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~~wd~~~-~~~ 559 (1084)
.|+.. +.+++++|+.|+.+..||++..+. ... ...|...|.++.-+| ++.++++|+. +-.|++||.++ +++
T Consensus 172 ~f~~~-~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY----De~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 172 KFSDK-EPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY----DECIRVLDTRNMGKP 246 (339)
T ss_pred ecccC-CCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecc----ccceeeeehhcccCc
Confidence 88744 447999999999999999995442 222 345666888888776 6778999887 55699999884 555
Q ss_pred eeeeeccccccCceEEEEEcCCCC-EEEEEECCCcEEEEECCCCeEE--EEEcCCCCCCCcceEEEecC----CCEEEEE
Q 001403 560 KRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKN----GTLLAVI 632 (1084)
Q Consensus 560 ~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~----~~~l~~~ 632 (1084)
+..-.. .+.|..+.++|.-. .++.++.-.-.+|-+...+... ..+..+.. -.++++..| ...+|++
T Consensus 247 l~~~~v----~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~---hdSl~YG~DWd~~~~~lATC 319 (339)
T KOG0280|consen 247 LFKAKV----GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKI---HDSLCYGGDWDSKDSFLATC 319 (339)
T ss_pred cccCcc----ccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeecccc---ccceeeccccccccceeeee
Confidence 433322 36899999998643 2233333344566665543322 11111111 234444433 3457775
Q ss_pred EC-CCeEE-EEEcCCC
Q 001403 633 AN-ENRIK-ILETPES 646 (1084)
Q Consensus 633 ~~-dg~i~-iwd~~~~ 646 (1084)
+. |+.++ +|-.-++
T Consensus 320 sFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 320 SFYDKKIRQLWLHITG 335 (339)
T ss_pred eccccceeeeeeeccC
Confidence 43 55544 6654433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-08 Score=113.16 Aligned_cols=508 Identities=11% Similarity=0.105 Sum_probs=266.0
Q ss_pred eEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEc
Q 001403 338 MSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAY 417 (1084)
Q Consensus 338 ~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~ 417 (1084)
+-..|+|...++|+++..+..| |+|.||--......-.. -.-.+++++|+|..-.||.|..-|.+.+|..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~-----GSVtIfadtGEPqr~Vt-----~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERG-----GSVTIFADTGEPQRDVT-----YPVHATSLCWHPEEFVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred cccccCCCCceeEEEEecCCCC-----ceEEEEecCCCCCcccc-----cceehhhhccChHHHHHhhccccceeEEEec
Confidence 4467999999999988887776 88888864322111000 1234567999999999999999999999998
Q ss_pred cCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE--eccC--CCcEEEEeecccCCCc-
Q 001403 418 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS--FEGH--GAPVYSLCPHAKENIH- 492 (1084)
Q Consensus 418 ~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~--~~~h--~~~v~~~~~~~~~~~~- 492 (1084)
.+.+.-. ....|..+|..+.||++|. .++|+..-|.+.+|....-..++. +..| ...++-++|.-+.++.
T Consensus 89 ~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee 163 (1416)
T KOG3617|consen 89 NTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREE 163 (1416)
T ss_pred CCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHH
Confidence 8764322 4558999999999999999 899999999999998763222221 2222 2334444443333321
Q ss_pred -----EEEEEecCCeEE-EEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecc
Q 001403 493 -----FIFSISVDGKIK-AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 566 (1084)
Q Consensus 493 -----~l~s~s~dg~i~-iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 566 (1084)
..+..+.+..+- .+++.......... -.-.|+|..++.++. +|+|+-.|- .|+.....+..
T Consensus 164 ~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~--------ksgv~~g~~F~~~~~----~GtVyyvdq-~g~~~~V~k~d 230 (1416)
T KOG3617|consen 164 KFKLAKAAVTGDESALDEPFNWKESLAERSDE--------KSGVPKGTEFLFAGK----SGTVYYVDQ-NGRQRTVHKLD 230 (1416)
T ss_pred hhhhhhhhccCchhhhcccccCccchhhcccc--------ccCCCCCcEEEEEcC----CceEEEEcC-CCcEEEEEEcc
Confidence 122333333322 33333111111110 112377887777765 556776663 34443333322
Q ss_pred ccccCceEEEEEcCCCCEEEEEE------------------------------CCCcEEEEECCCCeEE--EEEcCCCCC
Q 001403 567 QLQHNSVSVVHFDTAKDQILAAG------------------------------DDHVIKIWDMNKVQLL--TTIDAGGGL 614 (1084)
Q Consensus 567 ~~~~~~v~~~~~s~~~~~l~~~~------------------------------~dg~i~iwd~~~~~~~--~~~~~~~~~ 614 (1084)
. . ..+-|.+...-+++.- ..|.|-+=... |-+. ..+.. ...
T Consensus 231 S----~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEss-GvLr~~eKyg~-e~g 303 (1416)
T KOG3617|consen 231 S----E-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESS-GVLRKSEKYGL-ELG 303 (1416)
T ss_pred c----h-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccc-ccccCCcchhh-hcC
Confidence 1 0 0111111111111111 11211111110 1000 00000 112
Q ss_pred CCcceEEEecCCCEEEEEECCCeEEEEEcCCCC-------e---eeeccccccceeEEEEcCCCceeeeeccCceeEecC
Q 001403 615 PENPRICFNKNGTLLAVIANENRIKILETPESN-------S---VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 684 (1084)
Q Consensus 615 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-------~---~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~ 684 (1084)
..+.+++++..+..+..|...|.+.+|--.... . +...+...+.|..+.|.|..+.+++.+...-+.+..
T Consensus 304 e~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~v~ll~E 383 (1416)
T KOG3617|consen 304 EGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEEDVVLLGE 383 (1416)
T ss_pred CceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhheeeecc
Confidence 347899999999999999999999999654321 1 122233345566677776554443333222111100
Q ss_pred CCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCc
Q 001403 685 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 764 (1084)
Q Consensus 685 ~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 764 (1084)
.+ .. ..|.+...++.-+.+.-.|..+.
T Consensus 384 ~~-----l~-----------------------------~~h~~~~~A~q~ss~S~~L~hc~------------------- 410 (1416)
T KOG3617|consen 384 NS-----LT-----------------------------VKHRGKMAAIQTSSNSFTLLHCT------------------- 410 (1416)
T ss_pred Cc-----hH-----------------------------HHHhhhhHHhhhcCCceEEEeec-------------------
Confidence 00 00 00111211111111111111111
Q ss_pred ccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEE--EcCCCCCeEEEE
Q 001403 765 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT--IMPPSPTATSLA 842 (1084)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~--~~~~~~~i~~l~ 842 (1084)
+|. -.. + ...-++..++.+. ..++...+.+|..|++.+...... ........++++
T Consensus 411 --------------sGv-~~~--l---~~~~~~~gi~l~e--~~lvvwNgr~v~~y~lq~SG~la~~~~~tF~cet~~la 468 (1416)
T KOG3617|consen 411 --------------SGV-SQD--L---KLSIPSAGICLGE--KQLVVWNGRTVVTYDLQTSGSLATIQCTTFSCETTSLA 468 (1416)
T ss_pred --------------cch-hhh--h---hhccchhhheecc--ceEEEEcCceEEEEEecccchhHHHhhhhhccccchHh
Confidence 010 000 0 0122344455533 456777778899999864321111 111222334455
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEcCCceeeeee--cccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeec
Q 001403 843 FNPHDNNVIAIGMDDSTILIYNARSSEVISKL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT 920 (1084)
Q Consensus 843 ~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l--~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~ 920 (1084)
+.. .++...++.+ |.++.+. |...+.+ ..-.+.|.-+.++ |.+++.+...+.++-+|+...+.+.......
T Consensus 469 ~~n--qN~ycies~~--Vfvrt~q-Gtv~q~i~~seiEg~~~~ldi~--g~~l~v~t~~~~~k~~dvsr~e~ka~~~~~s 541 (1416)
T KOG3617|consen 469 IVN--QNLYCIESDK--VFVRTLQ-GTVRQEISLSEIEGVVVLLDIM--GELLIVQTVSTVAKRLDVSRAELKAVSYFSS 541 (1416)
T ss_pred Hhh--cceEEeccCc--EEEEecc-hhhhhhccchhccCceehhhhc--cceeEEeehHHHHHHhhhhhhcccccccccc
Confidence 553 4455556555 4444333 3333222 2334556555554 8889988888888889988766554433444
Q ss_pred CCCCccCCCCceEEEEccCCCEEEE---EeC----CeEEEEEcCCccee
Q 001403 921 PDGVMTLAPSETHIQFHKDQTRFLL---VHE----THLAIYEAEELTCL 962 (1084)
Q Consensus 921 ~~~~~~~~~~v~~~~~s~dg~~la~---~~d----~~i~vwd~~~~~~~ 962 (1084)
..+.....+.+..+..+..|..+.+ ..+ .++..||.++++..
T Consensus 542 ~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~ 590 (1416)
T KOG3617|consen 542 DRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQ 590 (1416)
T ss_pred cccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHH
Confidence 4444444457788888887776654 222 47999999887643
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-07 Score=117.14 Aligned_cols=260 Identities=12% Similarity=0.083 Sum_probs=162.2
Q ss_pred EEEEEecC-CCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCE
Q 001403 730 SRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 808 (1084)
Q Consensus 730 ~~l~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 808 (1084)
..++++++ +..+++-..++.|.+++.........+.. . ......|. +. .+.-.....+++++++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~---g---~~G~~dG~------~~-~a~f~~P~GIavd~~gn~ 637 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGST---G---EEGLRDGS------FE-DATFNRPQGLAYNAKKNL 637 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccC---C---CcCCCCCc------hh-ccccCCCcEEEEeCCCCE
Confidence 45788875 45555556678888887643211000000 0 00000010 00 012334678999999887
Q ss_pred EEEEe--CCeEEEEEcCCceeEEEEcCC-----------------CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce
Q 001403 809 LFSAS--GGVISLYIVMTFKTILTIMPP-----------------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 869 (1084)
Q Consensus 809 l~~~s--dg~i~vwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~ 869 (1084)
|++++ ++.|+++|..++. +.++.+. -.....++++|+++.++++...++.|++||..++.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 638 LYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 77765 4779999987764 3333210 11346799999667777777788999999998765
Q ss_pred eeeeec---------cc------ccCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeeee--------eecC---C
Q 001403 870 VISKLE---------GH------SKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRS--------LQTP---D 922 (1084)
Q Consensus 870 ~~~~l~---------~h------~~~V~~l~~spd~~-~l~s~s~dg~I~iwd~~~~~~~~~~~--------~~~~---~ 922 (1084)
.. .+. ++ -.....++|+||++ ++++-+.++.|++||+.++......- +... .
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 42 111 11 12356799999998 44555667999999998765321100 0000 0
Q ss_pred CC--ccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeecC------------CCCCEEEEEEccCCCEEEE
Q 001403 923 GV--MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFT 987 (1084)
Q Consensus 923 ~~--~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t 987 (1084)
+. ...-.....++++++|.++++ ..+++|++||..++......-.+ +-.....+++++||+.+++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 00 000113468999999987777 57889999999877654332111 1235678999999999999
Q ss_pred EeCCCcEEEEEcCCCce
Q 001403 988 SFVDGTLSIHEASNLEV 1004 (1084)
Q Consensus 988 ~~~dg~i~vwd~~~~~~ 1004 (1084)
-+.++.|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999999875
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-07 Score=115.92 Aligned_cols=255 Identities=11% Similarity=0.079 Sum_probs=160.2
Q ss_pred cEEEecCCCCEEEEEe--CCeEEEEEcCCceeEEEEcC--C------------CCCeEEEEEcCCCCcEEEEEe-CCCeE
Q 001403 798 PCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP--P------------SPTATSLAFNPHDNNVIAIGM-DDSTI 860 (1084)
Q Consensus 798 ~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~--~------------~~~i~~l~~s~~d~~~la~g~-~dg~i 860 (1084)
..+++++++..+.++. ++.|++||.. ++.+..+.+ . -.....+++++ ++..|+++. .++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 5688988655444443 5889999986 444443332 1 12357899998 666555554 45789
Q ss_pred EEEEcCCceeeeeeccc-----------------ccCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeee---ee
Q 001403 861 LIYNARSSEVISKLEGH-----------------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ 919 (1084)
Q Consensus 861 ~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~sp-d~~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~ 919 (1084)
+++|..++.. .++.+- -.....++|+| ++.++++.+.++.|++||..++......- ..
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999887653 333210 11346799999 56677777888999999998765322100 00
Q ss_pred cCCCCc---cCCCCceEEEEccCCCEEEE--EeCCeEEEEEcCCcceeeEee------------cCC--------CCCEE
Q 001403 920 TPDGVM---TLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWF------------PIS--------SVPIS 974 (1084)
Q Consensus 920 ~~~~~~---~~~~~v~~~~~s~dg~~la~--~~d~~i~vwd~~~~~~~~~~~------------~~h--------~~~v~ 974 (1084)
...+.. ..-.....++++|||..|.+ ..++.|++||+.++....... ..+ -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 001110 01124567999999986665 367899999998765321100 000 11235
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEecccc-ccCCCC--cccceeeeEEEECCCCCCEEEEEeCCCcEEEEc
Q 001403 975 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA-YLRPTT--SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1051 (1084)
Q Consensus 975 ~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~--~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~ 1051 (1084)
+++|+++|..+++-+.++.|++||..++.......... ....+. ...--.|..++++| ||+.+++-+.++.|++|+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 89999999998988899999999999887654332110 000000 00112456788998 588888888999999999
Q ss_pred CCCCC
Q 001403 1052 PNEPG 1056 (1084)
Q Consensus 1052 ~~~~~ 1056 (1084)
+....
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 96643
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-09 Score=113.29 Aligned_cols=242 Identities=15% Similarity=0.256 Sum_probs=171.1
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCC-cccc---ceeeeecccccEeEEEeecCCCcEEEEEEeCCCc
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 458 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~-~~~~---~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~ 458 (1084)
.+.||...|..++--.+.+-+++++.|.+|++|.+... ..+. ...++..|+.+|.++.|-.+-+ .++++ |+.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 37789999999988778888999999999999998742 2222 4557889999999999999988 66665 889
Q ss_pred EEEEECCCCceeeEec-----cCCCcEEEEeecccCCCcEEEEE-ecCCeEEEEECCCCCceEeec-----CCCCeEEEE
Q 001403 459 IKVWDAVTGSRTYSFE-----GHGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYD-----APGLGCTRM 527 (1084)
Q Consensus 459 i~vwd~~~g~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~~ 527 (1084)
|.+||.--|+.+..+. +..+.|.++ ++-+...++.+ +...+|+++|.+..+-..++. .+...+.++
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 9999998888775442 222334443 23244555555 788999999988776554443 344568899
Q ss_pred EEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEE-EECCCCeEEE
Q 001403 528 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI-WDMNKVQLLT 606 (1084)
Q Consensus 528 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~ 606 (1084)
+..+.|+.++++-. +|.|.+.|.++|+.+..+.... .....++ .|..+.++....|.++.+ |...+|....
T Consensus 883 aVa~~GN~lAa~LS----nGci~~LDaR~G~vINswrpme---cdllqla-apsdq~L~~saldHslaVnWhaldgimh~ 954 (1034)
T KOG4190|consen 883 AVADKGNKLAAALS----NGCIAILDARNGKVINSWRPME---CDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHL 954 (1034)
T ss_pred EeccCcchhhHHhc----CCcEEEEecCCCceeccCCccc---chhhhhc-CchhHHHHhhcccceeEeeehhcCCeeee
Confidence 99999999998865 6779999999999887766544 2333332 366677777788889988 9888776655
Q ss_pred EEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 607 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 607 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
....... ..--...-|..++++...+.+.+|.-
T Consensus 955 q~kpppe----pahflqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 955 QDKPPPE----PAHFLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred ccCCCCc----chhhhhccCceeEEeccCcEEEEEec
Confidence 5442211 11111123556777777677777753
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-07 Score=106.63 Aligned_cols=214 Identities=14% Similarity=0.053 Sum_probs=132.3
Q ss_pred CCCccceeeecccCCCCceEEEEcCCCce-eeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC
Q 001403 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHT-LLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 398 (1084)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~-las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp 398 (1084)
.+......+.+.... ......|||||+. ++..+.+ .+. ..|.++|+.++..... ....+.+....|||
T Consensus 174 ~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~--~~~----~~Iyv~dl~tg~~~~l----t~~~g~~~~~~~SP 242 (419)
T PRK04043 174 ADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYG--ERK----PTLYKYNLYTGKKEKI----ASSQGMLVVSDVSK 242 (419)
T ss_pred ECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEcc--CCC----CEEEEEECCCCcEEEE----ecCCCcEEeeEECC
Confidence 334344344444433 7789999999986 6654433 112 6789999987654332 22445667788999
Q ss_pred CCCEEEEEeC---CCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCC--cEEEEECCCCceeeEe
Q 001403 399 DGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSF 473 (1084)
Q Consensus 399 dg~~las~~~---dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~--~i~vwd~~~g~~~~~~ 473 (1084)
||+.|+.... +..|.++|+.+++. + .+..+.+......|+|||+.+++.+. ..+ .|.+.|+.+|+..+..
T Consensus 243 DG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 243 DGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVSD-RLGYPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEEC-CCCCceEEEEECCCCCeEeCc
Confidence 9998876532 34688888888753 2 23334433445689999996444432 223 6888898887763322
Q ss_pred ccCCCcEEEEeecccCCCcEEEEEecC---------CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001403 474 EGHGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 544 (1084)
Q Consensus 474 ~~h~~~v~~~~~~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 544 (1084)
. .... ...| ++||+.++..+.. ..|.+.|++++.... +.... ......|+|||+.++..... .
T Consensus 318 ~-~g~~--~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~-~~~~p~~SPDG~~I~f~~~~-~ 389 (419)
T PRK04043 318 F-HGKN--NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANG-VNQFPRFSSDGGSIMFIKYL-G 389 (419)
T ss_pred c-CCCc--CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCC-CcCCeEECCCCCEEEEEEcc-C
Confidence 2 1111 2356 4577777666543 257777877765433 33222 33368899999999887654 3
Q ss_pred CCeeEEEecCCCc
Q 001403 545 GESFLVEWNESEG 557 (1084)
Q Consensus 545 ~~~~i~~wd~~~~ 557 (1084)
+...+.+.++...
T Consensus 390 ~~~~L~~~~l~g~ 402 (419)
T PRK04043 390 NQSALGIIRLNYN 402 (419)
T ss_pred CcEEEEEEecCCC
Confidence 4556778887543
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.9e-07 Score=91.07 Aligned_cols=205 Identities=19% Similarity=0.156 Sum_probs=140.1
Q ss_pred EEecCCCCEEEEEeCCeEEEEEcCCc--eeEEE---EcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee
Q 001403 800 FALSKNDAYLFSASGGVISLYIVMTF--KTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 874 (1084)
Q Consensus 800 l~~s~dg~~l~~~sdg~i~vwd~~~~--~~~~~---~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l 874 (1084)
++.+.||+.||+..|..|.+-...+. ..+.. .+.....=..++||| |+.+||.+...|+|++||+...++ ..+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FVI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EEc
Confidence 67889999999999999988876542 11122 223334568899999 999999999999999999985443 233
Q ss_pred cc-------cccCEEEEEEcCCC------CEEEEEeCCCcEEEEeCCCCc---eeeeeeeecCCCCccCCCCceEEEEcc
Q 001403 875 EG-------HSKRVTGLVFSDAL------NILVSSGGDAQIFVWDVDGWG---IQTCRSLQTPDGVMTLAPSETHIQFHK 938 (1084)
Q Consensus 875 ~~-------h~~~V~~l~~spd~------~~l~s~s~dg~I~iwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~ 938 (1084)
.. -...|..+.|.+-. ..|+.-..+|.++-|-+..+. ......+.....+. ..|.++.+.|
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp---~Gi~~~vy~p 157 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP---HGINSAVYHP 157 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC---CceeEEEEcC
Confidence 21 23567777776532 245556678888877764322 12222233322223 3799999999
Q ss_pred CCCEEEEEe-----CC-------eEEEEEcCCcceeeE--------------------ee--------cCCCCCEEEEEE
Q 001403 939 DQTRFLLVH-----ET-------HLAIYEAEELTCLKQ--------------------WF--------PISSVPISQATF 978 (1084)
Q Consensus 939 dg~~la~~~-----d~-------~i~vwd~~~~~~~~~--------------------~~--------~~h~~~v~~l~f 978 (1084)
..++|++|+ ++ -+.-|.+-++..-.. +. ......|..|..
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL 237 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence 999988841 11 366776643321110 00 112567889999
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 979 SCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 979 s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
||||+.||+...+|.|.+|++++..++.++.
T Consensus 238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 9999999999999999999999999887776
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.94 E-value=0.00032 Score=81.04 Aligned_cols=586 Identities=11% Similarity=0.103 Sum_probs=288.3
Q ss_pred EEEcCCCCEEEEEeCCCEEEEEEcc-CCccccc---eeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001403 394 VVWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQ---QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 469 (1084)
Q Consensus 394 v~fspdg~~las~~~dg~v~iwd~~-~~~~~~~---~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~ 469 (1084)
-...++|...+.+..+|.+...-+. +++.... ....-+...-..|+..-++| +++.|+.-|.=.+-.+.+...
T Consensus 263 ~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng---~lFvGS~~gdSqLi~L~~e~d 339 (1096)
T KOG1897|consen 263 GRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG---VLFVGSRFGDSQLIKLNTEPD 339 (1096)
T ss_pred ccccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc---eEEEeccCCceeeEEccccCC
Confidence 3456788888999999987665554 4443322 11233455556777788777 578888766555555443221
Q ss_pred -------eeEeccCCCcEEEEeecccC--CCcEEEEEe---cCCeEEEEECCCCCce---EeecCCCCeEEEE-------
Q 001403 470 -------TYSFEGHGAPVYSLCPHAKE--NIHFIFSIS---VDGKIKAWLYDSLGAR---VDYDAPGLGCTRM------- 527 (1084)
Q Consensus 470 -------~~~~~~h~~~v~~~~~~~~~--~~~~l~s~s---~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~------- 527 (1084)
+.++. .-+||..++..-.. ....+++++ .||++|+..-.-+-.. ..+.+ -..++.+
T Consensus 340 ~gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~ 417 (1096)
T KOG1897|consen 340 VGSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDEN 417 (1096)
T ss_pred CCchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeecccccc
Confidence 12222 33577777764332 233455543 4788887743211110 01111 0111111
Q ss_pred ----------------------------EEcCCCCEEEEEeeCCCC-----CeeEEEecCCCceEeeeeeccccccCceE
Q 001403 528 ----------------------------AYSANGRRLFSCGTSKEG-----ESFLVEWNESEGAIKRTYQGLQLQHNSVS 574 (1084)
Q Consensus 528 ----------------------------~~s~d~~~l~~~~~~~~~-----~~~i~~wd~~~~~~~~~~~~~~~~~~~v~ 574 (1084)
.|+.+.+.+++....++. ...|++++-. .....+... ..++
T Consensus 418 ~d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~p----~~~t 491 (1096)
T KOG1897|consen 418 YDNYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRPP----GKIT 491 (1096)
T ss_pred CCcEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccCC----CceE
Confidence 122222333322221110 1113333322 011111111 2334
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecC--C----CEEEEEECCCeEEEEEc-CCCC
Q 001403 575 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN--G----TLLAVIANENRIKILET-PESN 647 (1084)
Q Consensus 575 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~----~~l~~~~~dg~i~iwd~-~~~~ 647 (1084)
....+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|- + +++++|..+..+.+.-. +...
T Consensus 492 i~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~ 570 (1096)
T KOG1897|consen 492 IGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLI 570 (1096)
T ss_pred EEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcc
Confidence 34444455677777777777777776655 333322233345888888873 2 26788877655544432 2222
Q ss_pred eeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccc
Q 001403 648 SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 727 (1084)
Q Consensus 648 ~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 727 (1084)
.+.........+ |. ++.+... ..|..++.++..||.+.-+-++............. -...
T Consensus 571 ~~~~~~l~~~~i------PR-----------SIl~~~~-e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~--lGt~ 630 (1096)
T KOG1897|consen 571 LITHEQLSGEII------PR-----------SILLTTF-EGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVT--LGTQ 630 (1096)
T ss_pred eeeeeccCCCcc------ch-----------heeeEEe-eccceEEEEEcCCceEEEEEEEcccceEccccccc--cCCC
Confidence 221111100000 00 1111000 23477888888888877666553322211111000 0223
Q ss_pred eEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCC
Q 001403 728 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 807 (1084)
Q Consensus 728 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 807 (1084)
++.--.|+..++.-+.+.+|.=..+|..+.. .++ ....++...+-.+ +.-..-..
T Consensus 631 P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k--------------Lv~--------spls~kev~~~c~---f~s~a~~d 685 (1096)
T KOG1897|consen 631 PISLRTFSSKSRTAVFALSDRPTVIYSSNGK--------------LVY--------SPLSLKEVNHMCP---FNSDAYPD 685 (1096)
T ss_pred CcEEEEEeeCCceEEEEeCCCCEEEEecCCc--------------EEE--------eccchHHhhhhcc---cccccCCc
Confidence 4444455555544444444433333332110 011 1111111011111 11111234
Q ss_pred EEEEEeCCeEEEEEcCCcee--EEEEcCCCCCeEEEEEcCCCCcEEEEEeC-----------C---CeEEEEEcCCceee
Q 001403 808 YLFSASGGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMD-----------D---STILIYNARSSEVI 871 (1084)
Q Consensus 808 ~l~~~sdg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~la~g~~-----------d---g~i~iwd~~~~~~~ 871 (1084)
.+++++.+.+++.-++.-+. ++++. -......+++.+ ....+++.+. . ..++++|-.+-+.+
T Consensus 686 ~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 686 SLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred eEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 57777777777776654332 23322 233455566665 3444444322 1 14677776665544
Q ss_pred eeec--cc--ccCEEEEEEcCC-CCEEEEEeC----------CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEE
Q 001403 872 SKLE--GH--SKRVTGLVFSDA-LNILVSSGG----------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 936 (1084)
Q Consensus 872 ~~l~--~h--~~~V~~l~~spd-~~~l~s~s~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 936 (1084)
...+ .. .-.|.++.|..| +.+++.|.. .|.|.|+.+..+... ..+....- .+.+.++..
T Consensus 764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L--~~v~e~~v----~Gav~aL~~ 837 (1096)
T KOG1897|consen 764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL--ELVAETVV----KGAVYALVE 837 (1096)
T ss_pred eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce--eeeeeeee----ccceeehhh
Confidence 3322 11 123555668887 777877753 467788877762211 11111100 012222211
Q ss_pred ccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC--CCceeEEecccccc
Q 001403 937 HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS--NLEVQCRILSTAYL 1014 (1084)
Q Consensus 937 s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~--~~~~~~~~~~~~~~ 1014 (1084)
-+|+ +++|-+..|++|++.+.+.++. ...|..++..+...-.|..+++|.-=++|.+-..+ .|.+.-. +..+.
T Consensus 838 -fngk-llA~In~~vrLye~t~~~eLr~-e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev--ArD~~ 912 (1096)
T KOG1897|consen 838 -FNGK-LLAGINQSVRLYEWTTERELRI-ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV--ARDYN 912 (1096)
T ss_pred -hCCe-EEEecCcEEEEEEccccceehh-hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe--ehhhC
Confidence 2344 4456677899999998866665 55678899999999999999999887887775544 4434311 11222
Q ss_pred CCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCCC
Q 001403 1015 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1058 (1084)
Q Consensus 1015 ~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~~ 1058 (1084)
+. |..++.+- |+..++.+..+|++++-.......+
T Consensus 913 p~-------Wmtaveil--~~d~ylgae~~gNlf~v~~d~~~~t 947 (1096)
T KOG1897|consen 913 PN-------WMTAVEIL--DDDTYLGAENSGNLFTVRKDSDATT 947 (1096)
T ss_pred cc-------ceeeEEEe--cCceEEeecccccEEEEEecCCCCc
Confidence 22 22333333 4678888899999999988654433
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.2e-09 Score=125.06 Aligned_cols=225 Identities=13% Similarity=0.176 Sum_probs=166.8
Q ss_pred CEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEecc-CCCc
Q 001403 401 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAP 479 (1084)
Q Consensus 401 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~-h~~~ 479 (1084)
+.++....++...-|..+.+.. .+..+-..|.++.=+|... +.+||+.||.|++|....+..+..++. -...
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~-----~~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~ 2253 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASV-----MIKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSR 2253 (2439)
T ss_pred ccCCcccCCccccceeccccee-----EeecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcch
Confidence 3444444455555555544322 2334556788888888877 789999999999999999988877743 2377
Q ss_pred EEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE
Q 001403 480 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 559 (1084)
Q Consensus 480 v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~ 559 (1084)
|+.+.| +.+|+.+..+..||.+.+|... .+.......|......+.|-. ..+++.+.+.+ ++.+.+||..-...
T Consensus 2254 vtr~~f--~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~~ 2327 (2439)
T KOG1064|consen 2254 VTRSRF--NHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPPM 2327 (2439)
T ss_pred hhhhhh--cccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCcc
Confidence 888888 4467789999999999999877 455566677777777777766 66777766555 67799999653211
Q ss_pred -eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeE
Q 001403 560 -KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 638 (1084)
Q Consensus 560 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 638 (1084)
-..-..|. +.++++++.|....+++|+.+|.|++||++..++++.++. +. ...++++++..|.+
T Consensus 2328 ~s~v~~~H~---~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~i 2392 (2439)
T KOG1064|consen 2328 NSLVHTCHD---GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNI 2392 (2439)
T ss_pred cceeeeecC---CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccce
Confidence 11124555 8899999999999999999999999999998887777653 22 46689999999999
Q ss_pred EEEEcCCCCeeeecc
Q 001403 639 KILETPESNSVDAAG 653 (1084)
Q Consensus 639 ~iwd~~~~~~~~~~~ 653 (1084)
+||++.....+..+.
T Consensus 2393 kIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2393 KIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEEEccccchhhcCc
Confidence 999999876665544
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.2e-09 Score=125.82 Aligned_cols=191 Identities=10% Similarity=0.172 Sum_probs=149.9
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc-cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 001403 834 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 912 (1084)
Q Consensus 834 ~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~-h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~ 912 (1084)
+-..+.++.-+| ...+.++|+.||.|++|....++.+..++. -...|+.+.|+.+|+....+..||.+.+|.+..
T Consensus 2207 ~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p--- 2282 (2439)
T KOG1064|consen 2207 PVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP--- 2282 (2439)
T ss_pred ccCceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC---
Confidence 345677888888 677889999999999999988887766642 237899999999999999999999999999984
Q ss_pred eeeeeeecCCCCccCCCCceEEEEccCCCEEEE-E---eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEE
Q 001403 913 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V---HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS 988 (1084)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~---~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~ 988 (1084)
+.+.....|.. ....+.|-. ..+++ | .++.+.+||.--.....-....|.+.++++++.|..+.|++|
T Consensus 2283 ---k~~~s~qchnk---~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2283 ---KPYTSWQCHNK---ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred ---cceeccccCCc---cccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence 23334444443 456666655 55565 2 456899999854333333336899999999999999999999
Q ss_pred eCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCC
Q 001403 989 FVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1057 (1084)
Q Consensus 989 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~ 1057 (1084)
+.+|.|++||+...+++..+.. ++ ...+|++|+..|.++||++++.+-
T Consensus 2355 gr~G~v~l~D~rqrql~h~~~~-------------------~~--~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA-------------------LD--TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred CCcCcEEEeehHHHHHHHHhhh-------------------hh--hhheeeccCcccceEEEEccccch
Confidence 9999999999999988866661 22 146999999999999999987753
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.3e-09 Score=108.28 Aligned_cols=297 Identities=10% Similarity=0.104 Sum_probs=190.9
Q ss_pred CCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccce----eeeecCCCCCeEEEE
Q 001403 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFK----TALVRDPGVSVNRVV 395 (1084)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~----~~~~~~h~~~V~~v~ 395 (1084)
.++..-.+..+.||.+.|.+++--.+..-+++++.| ++|++|.+........ .-.+..|+.+|..+.
T Consensus 721 ln~~~irL~nf~GH~~~iRai~AidNENSFiSASkD---------KTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~ig 791 (1034)
T KOG4190|consen 721 LNFDHIRLCNFTGHQEKIRAIAAIDNENSFISASKD---------KTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIG 791 (1034)
T ss_pred cccceeeeecccCcHHHhHHHHhcccccceeeccCC---------ceEEEEEeccccCccccceeeeEhhhccCccccee
Confidence 344456677889999999999888888888898888 9999999964322111 113567999999999
Q ss_pred EcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC-CCcEEEEEEeCCCcEEEEECCCCceeeEec
Q 001403 396 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYSFE 474 (1084)
Q Consensus 396 fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d-~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~ 474 (1084)
|-.|-++++++ ||-|.+||.--|..+.+...-..| +.+..+.--++ .+.++++.++...+|+++|.+.+.-..+++
T Consensus 792 fL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k 868 (1034)
T KOG4190|consen 792 FLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELK 868 (1034)
T ss_pred eeeccceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEE
Confidence 99999999876 777999999887766543222222 22333333333 344355556889999999999888766664
Q ss_pred -----cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeE
Q 001403 475 -----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 549 (1084)
Q Consensus 475 -----~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 549 (1084)
+....+.+++..+ .|+.++.+-.+|.|.+.|.+++..+..+.........++ .|..+.++.... +..+
T Consensus 869 Vcna~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal----dHsl 941 (1034)
T KOG4190|consen 869 VCNAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL----DHSL 941 (1034)
T ss_pred eccCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc----ccee
Confidence 3345678888854 567999999999999999998876665544443333333 244455554433 4446
Q ss_pred EE-ecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC----CeEEEEEcCCCCCCCcceEEEec
Q 001403 550 VE-WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLPENPRICFNK 624 (1084)
Q Consensus 550 ~~-wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~s~ 624 (1084)
.+ |....|......+... .+..- ...-|..++++.....+.+|.-.. ...+..+.........++++.-|
T Consensus 942 aVnWhaldgimh~q~kppp---epahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LP 1016 (1034)
T KOG4190|consen 942 AVNWHALDGIMHLQDKPPP---EPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLP 1016 (1034)
T ss_pred EeeehhcCCeeeeccCCCC---cchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeecc
Confidence 66 8776665544433222 11111 112355677777666777774211 12223333333333456777777
Q ss_pred CCCEEEEEECCCeEEE
Q 001403 625 NGTLLAVIANENRIKI 640 (1084)
Q Consensus 625 ~~~~l~~~~~dg~i~i 640 (1084)
-..-+..|...|.|.+
T Consensus 1017 LN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1017 LNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred ccchhhccCCCCceee
Confidence 6666777777787765
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.3e-06 Score=96.82 Aligned_cols=216 Identities=10% Similarity=0.065 Sum_probs=126.3
Q ss_pred EEEEeCCeEEEEEcCCceeEEEEcCCCCCe-----EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccc----
Q 001403 809 LFSASGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK---- 879 (1084)
Q Consensus 809 l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~---- 879 (1084)
++...++.+..+|..+|+.+.......... .+.+.. ++ .++.++.+|.+..+|..+|+.+........
T Consensus 164 ~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~ 240 (394)
T PRK11138 164 LVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT 240 (394)
T ss_pred EEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCcc
Confidence 333335677777777777776654321110 111222 23 466678899999999999987765431100
Q ss_pred ---CEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEE
Q 001403 880 ---RVTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 954 (1084)
Q Consensus 880 ---~V~~l~~sp--d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vw 954 (1084)
....+.-+| .+..+..++.+|.+..+|..+|+..-...+ +. ...+.. .++..++...++.+..+
T Consensus 241 ~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~----~~------~~~~~~-~~~~vy~~~~~g~l~al 309 (394)
T PRK11138 241 EIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY----GS------VNDFAV-DGGRIYLVDQNDRVYAL 309 (394)
T ss_pred chhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC----CC------ccCcEE-ECCEEEEEcCCCeEEEE
Confidence 011111122 245666777899999999999874332211 11 111222 23444455688999999
Q ss_pred EcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCC
Q 001403 955 EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1034 (1084)
Q Consensus 955 d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1034 (1084)
|..+|+.+............+... .+.+|+.++.||.+.+.|..+|+.+.+.... ...+.+.-+ ..
T Consensus 310 d~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~--------~~~~~s~P~-~~--- 375 (394)
T PRK11138 310 DTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD--------SSGFLSEPV-VA--- 375 (394)
T ss_pred ECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC--------CCcceeCCE-EE---
Confidence 999998765422111111222222 2457788899999999999999998776521 011221101 12
Q ss_pred CCEEEEEeCCCcEEEEcC
Q 001403 1035 PTQFAVGLTNGEVYVIEP 1052 (1084)
Q Consensus 1035 ~~~l~~~~~dg~v~vw~~ 1052 (1084)
++.|.+++.||.|+.+++
T Consensus 376 ~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 376 DDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEeCCceEEEEeC
Confidence 458999999999998875
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-07 Score=93.34 Aligned_cols=204 Identities=16% Similarity=0.102 Sum_probs=137.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC-CCce
Q 001403 391 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSR 469 (1084)
Q Consensus 391 V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~-~g~~ 469 (1084)
..++.|++.|..++++..+|.+.+-+..... +.....++.|.-..+-..|+..... ++.+||.|+.+..||++ .++.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTF 201 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcce
Confidence 4578899999999999999998855443332 3333367899999999999877665 89999999999999998 4455
Q ss_pred eeE-eccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCC--EEEEEeeCCCCC
Q 001403 470 TYS-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR--RLFSCGTSKEGE 546 (1084)
Q Consensus 470 ~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~--~l~~~~~~~~~~ 546 (1084)
+.. .+.|...|.++.-++. .+.++++|+.|-.|++||.++......-..-.+.|+.+..+|.-. .|++|-.++
T Consensus 202 i~~n~kvH~~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G--- 277 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG--- 277 (339)
T ss_pred eeecceeeecceEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC---
Confidence 543 5678889999876643 668999999999999999997766555555567899999988543 344433211
Q ss_pred eeEEEecCCC--ceEeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEE-EEECCCC
Q 001403 547 SFLVEWNESE--GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIK-IWDMNKV 602 (1084)
Q Consensus 547 ~~i~~wd~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~-iwd~~~~ 602 (1084)
..+-+.+. .+....+..+..|..-...-.|......+++++ .|+.++ +|-..++
T Consensus 278 --~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 278 --AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred --ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 34444333 221122222322224445555543345677754 566644 6654443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-06 Score=98.35 Aligned_cols=212 Identities=9% Similarity=0.013 Sum_probs=132.4
Q ss_pred eEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCc-EEEEEeCC---CeEEEEEcCCceeeeeecccccCEEEEEEcCCCC
Q 001403 816 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALN 891 (1084)
Q Consensus 816 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~la~g~~d---g~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~ 891 (1084)
.|.+-|... ...+.+.... .+....||| |++ .++..+.+ ..|+++|+.+++...... ..+......|||||+
T Consensus 170 ~l~~~d~dg-~~~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTL-TYQKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCC-CceeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 355545543 3334343333 678899999 676 46654433 479999999887544333 445566788999998
Q ss_pred EEEEE-eC--CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCC----eEEEEEcCCcceeeE
Q 001403 892 ILVSS-GG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAIYEAEELTCLKQ 964 (1084)
Q Consensus 892 ~l~s~-s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~----~i~vwd~~~~~~~~~ 964 (1084)
.|+.. +. +..|.++|+.+++... +....+ ......|+|||+.|+..++. .|+++|+.+++....
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~---LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQ---ITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEE---cccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 77644 33 3568888988765322 222222 12356899999998885443 699999988876544
Q ss_pred eecCCCCCEEEEEEccCCCEEEEEeCC---------CcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCC
Q 001403 965 WFPISSVPISQATFSCDCRMVFTSFVD---------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1035 (1084)
Q Consensus 965 ~~~~h~~~v~~l~fs~dg~~l~t~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~ 1035 (1084)
...+. ....|||||++|+..+.. ..|.+.|+.++... .+... + . ....+|+| ||
T Consensus 317 t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-----~---~---~~~p~~SP-DG 379 (419)
T PRK04043 317 VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-----G---V---NQFPRFSS-DG 379 (419)
T ss_pred ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-----C---C---cCCeEECC-CC
Confidence 33222 124899999998877654 26888899888653 23211 0 0 01257999 58
Q ss_pred CEEEEEeCC-CcEEEEcCCCCCC
Q 001403 1036 TQFAVGLTN-GEVYVIEPNEPGD 1057 (1084)
Q Consensus 1036 ~~l~~~~~d-g~v~vw~~~~~~~ 1057 (1084)
..|+....+ |.-.++-+.-.+.
T Consensus 380 ~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 380 GSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CEEEEEEccCCcEEEEEEecCCC
Confidence 877776654 4444555544553
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-06 Score=89.29 Aligned_cols=183 Identities=15% Similarity=0.174 Sum_probs=128.8
Q ss_pred EEEecCCCCEEEEEe------CCeEEEEEcC-CceeEEEEcCCCCCeEEEEEcCCCCcEEEEEe----------------
Q 001403 799 CFALSKNDAYLFSAS------GGVISLYIVM-TFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---------------- 855 (1084)
Q Consensus 799 ~l~~s~dg~~l~~~s------dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~---------------- 855 (1084)
.-+||+||++|.+.. .|.|-|||.. +.+.+.++..+.-..-.+.+.| |++.|+++.
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 468999999999874 3779999999 7888889988887778899999 887777652
Q ss_pred --CCCeEEEEEcCCceeeee--e--cccccCEEEEEEcCCCCEEEEEeCCCc-------EEEEeCCCCceeeeeeeecCC
Q 001403 856 --DDSTILIYNARSSEVISK--L--EGHSKRVTGLVFSDALNILVSSGGDAQ-------IFVWDVDGWGIQTCRSLQTPD 922 (1084)
Q Consensus 856 --~dg~i~iwd~~~~~~~~~--l--~~h~~~V~~l~~spd~~~l~s~s~dg~-------I~iwd~~~~~~~~~~~~~~~~ 922 (1084)
.+-++...|..+|+++.+ + .-|...|..|++.++|..++-.=..|. |-+++-... . ..+....
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~--~~~~~p~ 209 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--L--RLLPAPE 209 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--c--eeccCCh
Confidence 223566678888988866 5 348889999999999877665433331 334433331 0 1111111
Q ss_pred C-CccCCCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeC
Q 001403 923 G-VMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV 990 (1084)
Q Consensus 923 ~-~~~~~~~v~~~~~s~dg~~la~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~ 990 (1084)
. -....+.+-+++++++|.+++++ ..+.+.+||..+++.+.... -..+..++-.+++ ++++.+.
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-eEEeCCC
Confidence 1 11222468899999999999885 56789999999999887643 3456677777777 6666543
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.7e-08 Score=106.32 Aligned_cols=227 Identities=16% Similarity=0.278 Sum_probs=157.3
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeec
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 443 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd-g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~ 443 (1084)
..-.||.+.........-++.||...|+.+-|.|. -..||+++.|..|..||+.+.. +.+.........-..++|+-
T Consensus 91 qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--~p~ys~~~w~s~asqVkwny 168 (1081)
T KOG0309|consen 91 QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--RPFYSTSSWRSAASQVKWNY 168 (1081)
T ss_pred chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC--cceeeeecccccCceeeecc
Confidence 44568988765554444568999999999999984 5688999999999999998865 33334444445677889987
Q ss_pred CCCcEEEEEEeCCCcEEEEECCCC-ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee-cCCC
Q 001403 444 PCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPG 521 (1084)
Q Consensus 444 d~~~l~l~s~~~d~~i~vwd~~~g-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~ 521 (1084)
... .+.+.+..+.|.+||.+.| .++..+++|...|+.+.|..... ..+.+.+.||+|+.||.+........ ....
T Consensus 169 k~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~ 245 (1081)
T KOG0309|consen 169 KDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTN 245 (1081)
T ss_pred cCc--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceecccc
Confidence 666 3555666778999999866 56788999999999998854322 46889999999999999865443322 2233
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCeeEEE---------ecCCC-ceEeeeeeccccccCceEEEEEcCC----------
Q 001403 522 LGCTRMAYSANGRRLFSCGTSKEGESFLVE---------WNESE-GAIKRTYQGLQLQHNSVSVVHFDTA---------- 581 (1084)
Q Consensus 522 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~---------wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~---------- 581 (1084)
.++..-.+.|-|.-.+.--.. |.+.+.+ |+..+ .+.++.|.||. +.|....|-..
T Consensus 246 ~piw~~r~~Pfg~g~~~mp~~--G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~---D~V~eFlWR~r~e~~~d~d~r 320 (1081)
T KOG0309|consen 246 FPIWRGRYLPFGEGYCIMPMV--GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD---DVVLEFLWRKRKECDGDYDSR 320 (1081)
T ss_pred CcceeccccccCceeEecccc--CCeeeeeccccchhhhhccccCCcceeeecCcc---hHHHHHhhhhcccccCCCCcc
Confidence 466666677755543332211 1223333 33333 45788899988 66655444221
Q ss_pred CCEEEEEECCCcEEEEECCC
Q 001403 582 KDQILAAGDDHVIKIWDMNK 601 (1084)
Q Consensus 582 ~~~l~~~~~dg~i~iwd~~~ 601 (1084)
.-.|++-+.|.++++|-+.+
T Consensus 321 dfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 321 DFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ceeEEEeecCCceEeeeccH
Confidence 23789999999999998764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.8e-07 Score=98.66 Aligned_cols=338 Identities=15% Similarity=0.122 Sum_probs=187.4
Q ss_pred EEEEEcCCCCEEEEEe----CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC
Q 001403 392 NRVVWSPDGSLLGVAY----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 467 (1084)
Q Consensus 392 ~~v~fspdg~~las~~----~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g 467 (1084)
+-..|+|...++|+++ ..|.|.||- ++|+..+.. +. .-.+++++|+|..- +|+.|-.-|.+.+|...+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~---P~hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TY---PVHATSLCWHPEEF--VLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-cc---ceehhhhccChHHH--HHhhccccceeEEEecCCc
Confidence 3457899888998885 357788884 455533211 22 22367799999876 7888888999999997777
Q ss_pred ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec--CC---C-CeEEEEEEcCCCCEEE----
Q 001403 468 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--AP---G-LGCTRMAYSANGRRLF---- 537 (1084)
Q Consensus 468 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~---~-~~i~~~~~s~d~~~l~---- 537 (1084)
+.......|..+|..+.|+ ++|..++++..-|.|.+|.++..+...... .| . -...+...++++.-++
T Consensus 92 e~htv~~th~a~i~~l~wS--~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laK 169 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWS--HDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAK 169 (1416)
T ss_pred eeeeeccCCCCCceeEEec--CCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhh
Confidence 7666667899999999995 577899999999999999887443322211 11 1 1334556667644322
Q ss_pred -EEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCC
Q 001403 538 -SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 616 (1084)
Q Consensus 538 -~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 616 (1084)
+.+.+..+-....-|..++.. +.. . -.-.|+|..++.++.+|+|+--|- .|+..........
T Consensus 170 aaVtgDe~alD~~fnwk~~~a~--rs~----------~-ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~--- 232 (1416)
T KOG3617|consen 170 AAVTGDESALDEPFNWKESLAE--RSD----------E-KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE--- 232 (1416)
T ss_pred hhccCchhhhcccccCccchhh--ccc----------c-ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch---
Confidence 111111110112222211110 000 0 013478888999999999988774 4555555544322
Q ss_pred cceEEEecCCCEEEEEECCCeEEEEEcC-CCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccce
Q 001403 617 NPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 695 (1084)
Q Consensus 617 v~~v~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 695 (1084)
..+-|.+...-+++...+-++.++-.. +|..-... .+.++- -.|.. .|. +++
T Consensus 233 -vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~--------~vk~sg-----k~Ggr------------qGg-iA~ 285 (1416)
T KOG3617|consen 233 -VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERC--------AVKVSG-----KLGGR------------QGG-IAC 285 (1416)
T ss_pred -HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhh--------hhhhcc-----ccCCc------------cCc-ccc
Confidence 234455544555555444444443322 22110000 000000 00000 011 333
Q ss_pred ecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeee
Q 001403 696 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 775 (1084)
Q Consensus 696 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 775 (1084)
+...|.++- ...+.+ .....+.+++++..+..+.++...|.+.+|.-....+..+ ...-.|
T Consensus 286 sEssGvLr~--------~eKyg~-----e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~------p~~d~w 346 (1416)
T KOG3617|consen 286 SESSGVLRK--------SEKYGL-----ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGD------PTIDVW 346 (1416)
T ss_pred ccccccccC--------Ccchhh-----hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCC------CCcceE
Confidence 333331110 111111 1446789999999999999999999999997433322111 123455
Q ss_pred cCCCCCccccccCcCCCCCCCccEEEecCCCCEEEE
Q 001403 776 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 811 (1084)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~ 811 (1084)
.+.+.. ...+.|+.+.|.|--..+++
T Consensus 347 ~l~~~~----------e~~g~I~~i~Wg~~k~~~av 372 (1416)
T KOG3617|consen 347 TLNGKR----------ESLGKISLIRWGPIKSTAAV 372 (1416)
T ss_pred EecCch----------hhccceEEEEeccccchhhh
Confidence 544433 24556777777774444443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1e-05 Score=91.70 Aligned_cols=153 Identities=19% Similarity=0.115 Sum_probs=92.3
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCC--cEE-----EEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCC
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA--PVY-----SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 521 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~--~v~-----~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 521 (1084)
.++.++.++.+.-+|.++|+.+-+...... ... .+.-.+.-++..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 466677788888999999988765532210 000 0000011123467788899999999999998877765544
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccccc--CceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 001403 522 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDM 599 (1084)
Q Consensus 522 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 599 (1084)
....+... .++ .++.+.. ++.++.+|..+|+.+..+....... ....+... .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v-~~~-~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVV-SDG-LVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEE-ECC-EEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 32222222 133 4444432 6679999999999987775432000 00001111 1346777888999999999
Q ss_pred CCCeEEEEEc
Q 001403 600 NKVQLLTTID 609 (1084)
Q Consensus 600 ~~~~~~~~~~ 609 (1084)
.+|+.+....
T Consensus 223 ~~G~~~W~~~ 232 (394)
T PRK11138 223 EQGQLIWQQR 232 (394)
T ss_pred cCChhhheec
Confidence 9988776543
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.2e-06 Score=81.83 Aligned_cols=247 Identities=11% Similarity=0.109 Sum_probs=135.0
Q ss_pred eEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccc--ceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEE
Q 001403 338 MSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSML--FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 415 (1084)
Q Consensus 338 ~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~--~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iw 415 (1084)
|.++.++||+.||.- ++..|.|-.....-.. -+..+.++..-.=..++||||+..||.+...|+|+++
T Consensus 1 W~~~~~~~Gk~lAi~----------qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vf 70 (282)
T PF15492_consen 1 WHLALSSDGKLLAIL----------QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVF 70 (282)
T ss_pred CceeecCCCcEEEEE----------eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEE
Confidence 457889999999983 1245555544322111 1112233444456679999999999999999999999
Q ss_pred EccCCcccc--ceeee-ecccccEeEEEeecCC-----CcEEEEEEeCCCcEEEEECCC-----CceeeEec--c-CCCc
Q 001403 416 AYHGGSDAR--QQLEI-DAHVGNVNDLAFSAPC-----KQISVITCGDDKTIKVWDAVT-----GSRTYSFE--G-HGAP 479 (1084)
Q Consensus 416 d~~~~~~~~--~~~~l-~~h~~~V~~l~~s~d~-----~~l~l~s~~~d~~i~vwd~~~-----g~~~~~~~--~-h~~~ 479 (1084)
|+.+.+... ..... ..-...|..+.|.+-. .. .|+.-..+|.++=+-+.. .+..+++. . +...
T Consensus 71 dl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~G 149 (282)
T PF15492_consen 71 DLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHG 149 (282)
T ss_pred ecccceeEEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCc
Confidence 998754321 10001 1123467777775532 11 244455577776665432 23334442 2 4678
Q ss_pred EEEEeecccCCCcEEEEEecCCe-EEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCC----CeeEEEecC
Q 001403 480 VYSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG----ESFLVEWNE 554 (1084)
Q Consensus 480 v~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~----~~~i~~wd~ 554 (1084)
|.++.+++.. ++|+.|+.... -..+ ......+++-..-.+..+.......++. ..+..+|.+
T Consensus 150 i~~~vy~p~h--~LLlVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~ 216 (282)
T PF15492_consen 150 INSAVYHPKH--RLLLVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRI 216 (282)
T ss_pred eeEEEEcCCC--CEEEEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEEccccCccccccccccceeec
Confidence 9999997654 56666553221 0000 0111122222221221111111000000 001223333
Q ss_pred CCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC
Q 001403 555 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 611 (1084)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 611 (1084)
-+.+.... .+ .....|..+..||||+.|++...+|.|.+|++.+-++......+
T Consensus 217 ~~~~~fs~-~~--~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 217 PSFKFFSR-QG--QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred cceeeeec-cc--cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 32222111 11 11367999999999999999999999999999987777666543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.9e-08 Score=98.40 Aligned_cols=160 Identities=9% Similarity=0.094 Sum_probs=115.3
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce----eeeeecccccCEEEEEEcCCCCEEEE---EeCCCcEEEEeCCCC
Q 001403 838 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGHSKRVTGLVFSDALNILVS---SGGDAQIFVWDVDGW 910 (1084)
Q Consensus 838 i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~----~~~~l~~h~~~V~~l~~spd~~~l~s---~s~dg~I~iwd~~~~ 910 (1084)
...+..++ ++++||++..+....++++.... ++..... ...-+++.|..+...... ++....+.+|....+
T Consensus 65 ~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 65 PALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred ccccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 34455667 88899999888887777776433 2222221 122334444444444433 445556666766643
Q ss_pred ceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEe
Q 001403 911 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 989 (1084)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 989 (1084)
. ....-||.. .++.+++|||+++|+++ .|..|++-.+..-..+..+..||..-|..++.-++ ..|+++|
T Consensus 143 ~------~~~~lGhvS---ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~s 212 (390)
T KOG3914|consen 143 R------CEPILGHVS---MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGS 212 (390)
T ss_pred C------cchhhhhhh---hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecC
Confidence 2 233456665 89999999999999997 78999999998888888888899999999998765 4589999
Q ss_pred CCCcEEEEEcCCCceeEEec
Q 001403 990 VDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 990 ~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
.|++|++||+.+|+.+..+.
T Consensus 213 GD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 213 GDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCCcEEEEecccCCcccccc
Confidence 99999999999999876554
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=97.34 Aligned_cols=161 Identities=18% Similarity=0.124 Sum_probs=108.9
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccc---cceeeeecCCCCCeEEEEEcCCCCEEEEE---eCC
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSM---LFKTALVRDPGVSVNRVVWSPDGSLLGVA---YSK 409 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~---~~~~~~~~~h~~~V~~v~fspdg~~las~---~~d 409 (1084)
.++.+..+|+|++||++..+ +...++++..... ....... ...-+++.|-.+......+ ++.
T Consensus 64 a~~~~~~s~~~~llAv~~~~---------K~~~~f~~~~~~~~~kl~~~~~v---~~~~~ai~~~~~~~sv~v~dkagD~ 131 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSS---------KQRAVFDYRENPKGAKLLDVSCV---PKRPTAISFIREDTSVLVADKAGDV 131 (390)
T ss_pred cccccccCCCceEEEEEeCC---------CceEEEEEecCCCcceeeeEeec---ccCcceeeeeeccceEEEEeecCCc
Confidence 45566778888888886433 4444444432221 1111111 1233344454444555544 444
Q ss_pred CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe-ccCCCcEEEEeeccc
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAK 488 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~-~~h~~~v~~~~~~~~ 488 (1084)
..+.+|....+.+. .+-||-..++.++|+||++ +++++..|..|+|-....-..+..+ -||..-|..++..+
T Consensus 132 ~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~- 204 (390)
T KOG3914|consen 132 YSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD- 204 (390)
T ss_pred eeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-
Confidence 55666666654332 3559999999999999999 8999999999999877666666555 67999999999743
Q ss_pred CCCcEEEEEecCCeEEEEECCCCCceEee
Q 001403 489 ENIHFIFSISVDGKIKAWLYDSLGARVDY 517 (1084)
Q Consensus 489 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 517 (1084)
+..|+++|.|+++++||+.+++.+..+
T Consensus 205 --~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 205 --NYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred --CceeeecCCCCcEEEEecccCCccccc
Confidence 357999999999999999998876544
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.1e-06 Score=88.87 Aligned_cols=223 Identities=13% Similarity=0.134 Sum_probs=139.6
Q ss_pred CCeEEEEEcCCceeEEEEcCC--CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCC
Q 001403 814 GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 891 (1084)
Q Consensus 814 dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~ 891 (1084)
+|+|..||..+|+.+...... .....+.++. ++..+++++.++.|+.||..+|+.+.+... .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 588999999999998887542 1222222332 345677778999999999999998877664 22211111 22456
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCCC
Q 001403 892 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISS 970 (1084)
Q Consensus 892 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~ 970 (1084)
.++.++.++.|..+|..+|+..-........... .........++..++++ .++.|..+|.++|+.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 6677778889999999998865432111111110 12223333347777775 589999999999999887654221
Q ss_pred C---C------EEEEEEccCCCEEEEEeCCCc-EEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEE
Q 001403 971 V---P------ISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1040 (1084)
Q Consensus 971 ~---~------v~~l~fs~dg~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~ 1040 (1084)
. . +..-....++ .++.++.+|. +.+ |+.+++.+.+.. ... .... ..+ ++..|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~~~---~~~-~~~~l~~ 217 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IYSL---PSV-DGGTLYV 217 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------ECEC---EEC-CCTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----ccCC---cee-eCCEEEE
Confidence 1 1 1222233345 7777777885 555 999998653222 111 1211 222 3678888
Q ss_pred EeCCCcEEEEcCCCCCCCcc
Q 001403 1041 GLTNGEVYVIEPNEPGDTWA 1060 (1084)
Q Consensus 1041 ~~~dg~v~vw~~~~~~~~~~ 1060 (1084)
++.+|.|..||+...+..|.
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 88999999999988877774
|
... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.1e-07 Score=90.49 Aligned_cols=259 Identities=14% Similarity=0.202 Sum_probs=165.8
Q ss_pred CCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCce-----eEEEEcCCC------------CCeEEEEEcCCCC-cEEEE
Q 001403 793 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK-----TILTIMPPS------------PTATSLAFNPHDN-NVIAI 853 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~-----~~~~~~~~~------------~~i~~l~~s~~d~-~~la~ 853 (1084)
....|+++.|...|.|+++|. +|.|.+|.-+... ....+++|. ..|..+.|-.+.+ ..+..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 566789999999999999998 6889999865432 223345443 2466777765333 35556
Q ss_pred EeCCCeEEEEEcCCcee-------------------------------------e----e-ee-cccccCEEEEEEcCCC
Q 001403 854 GMDDSTILIYNARSSEV-------------------------------------I----S-KL-EGHSKRVTGLVFSDAL 890 (1084)
Q Consensus 854 g~~dg~i~iwd~~~~~~-------------------------------------~----~-~l-~~h~~~V~~l~~spd~ 890 (1084)
.+.|.+|++|.+..... + . .. ..|.-.|.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 77899999998743200 0 0 01 3467778899999998
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCC--ccCCCCceEEEEccCCCEEEE--EeCCeEEEEEcCCcce-----
Q 001403 891 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV--MTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTC----- 961 (1084)
Q Consensus 891 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~dg~~la~--~~d~~i~vwd~~~~~~----- 961 (1084)
..++++ .|=.|.+|+++-... ...+-....| .....-|++..|+|....+.. ++.|.|++-|++....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~--sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDG--SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred heeeec-cceeeeeccccccCC--ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 888876 566799999875321 1111111111 111235789999997654443 6889999999873221
Q ss_pred -eeE---------eecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc-eeEEecccccc----CCCCcccceee-
Q 001403 962 -LKQ---------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE-VQCRILSTAYL----RPTTSCLHVYP- 1025 (1084)
Q Consensus 962 -~~~---------~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~-~~~~~~~~~~~----~~~~~~~~v~~- 1025 (1084)
+.. .+.+-...|..+.||++|+|+++-+. -+|++||+.-.+ .+..+..+..+ ..-...++|+.
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 100 11112567889999999999997643 589999988653 44444322111 11112344554
Q ss_pred eEEEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 1026 HAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1026 ~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
..+.|+. |...+++|+..+...++-...++
T Consensus 341 FeisfSg-d~~~v~sgsy~NNfgiyp~~ssg 370 (460)
T COG5170 341 FEISFSG-DDKHVLSGSYSNNFGIYPTDSSG 370 (460)
T ss_pred EEEEecC-CcccccccccccceeeeccccCC
Confidence 6788887 46788888888888887755554
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.9e-05 Score=79.03 Aligned_cols=206 Identities=16% Similarity=0.129 Sum_probs=139.7
Q ss_pred ccEEEecC-CCCEEEEEe--CCeEEEEEcCCceeEEEEcCCCCCe--EEEEEcCCCCcEEEEEeC-----CCeEEEEEcC
Q 001403 797 VPCFALSK-NDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGMD-----DSTILIYNAR 866 (1084)
Q Consensus 797 v~~l~~s~-dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~la~g~~-----dg~i~iwd~~ 866 (1084)
...++.+| .+..++.+- .....+||..+++....+....+.- -.-+||+ ||++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECc
Confidence 34678888 455555665 3458999999999988877654432 3578999 8998887644 4799999999
Q ss_pred -CceeeeeecccccCEEEEEEcCCCCEEEEEeC------------------CCcEEEEeCCCCceeeeeeeecCCCCccC
Q 001403 867 -SSEVISKLEGHSKRVTGLVFSDALNILVSSGG------------------DAQIFVWDVDGWGIQTCRSLQTPDGVMTL 927 (1084)
Q Consensus 867 -~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~------------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 927 (1084)
+.+.+.++..|.-.--.+.+.|||+.|+.+-. +-.+..-|..+|+......+.. .-|.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-~~~~-- 162 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-DLHQ-- 162 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-cccc--
Confidence 56778888877766777899999988876521 1234555666665444322211 1122
Q ss_pred CCCceEEEEccCCCEEEEEe-CC-------eEEEEEcCCcceeeEeec------CCCCCEEEEEEccCCCEEEE-EeCCC
Q 001403 928 APSETHIQFHKDQTRFLLVH-ET-------HLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFT-SFVDG 992 (1084)
Q Consensus 928 ~~~v~~~~~s~dg~~la~~~-d~-------~i~vwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~t-~~~dg 992 (1084)
..+..+++.++|..++... .+ -|.+++-. +.+..+.. .-...+-+|+++.+|.++++ +-.-|
T Consensus 163 -lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 163 -LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred -cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 2699999999999877641 11 24455443 22222111 12578999999999987754 44668
Q ss_pred cEEEEEcCCCceeEEec
Q 001403 993 TLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 993 ~i~vwd~~~~~~~~~~~ 1009 (1084)
.+.+||..+|+++....
T Consensus 240 ~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 240 RVAVWDAATGRLLGSVP 256 (305)
T ss_pred EEEEEECCCCCEeeccc
Confidence 89999999999985554
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4e-07 Score=89.72 Aligned_cols=175 Identities=19% Similarity=0.241 Sum_probs=101.6
Q ss_pred CCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCce---eEEEEcCCC-----CCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001403 792 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---TILTIMPPS-----PTATSLAFNPHDNNVIAIGMDDSTILIY 863 (1084)
Q Consensus 792 ~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~---~~~~~~~~~-----~~i~~l~~s~~d~~~la~g~~dg~i~iw 863 (1084)
.|...+.++.|..|.+.+.++.+=.|-+|+++-.. .+..+++|. .-|++..|+|....++...+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 47888999999999999999999999999986322 233344443 3467888888666777778888888888
Q ss_pred EcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEE
Q 001403 864 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 943 (1084)
Q Consensus 864 d~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 943 (1084)
|++...+- -. ...+.--..|+. |. ..+.+.. ..|..+.|+++|+++
T Consensus 250 DlRq~alc--------------dn--~~klfe~~~D~v----~~-----------~ff~eiv---sSISD~kFs~ngryI 295 (460)
T COG5170 250 DLRQSALC--------------DN--SKKLFELTIDGV----DV-----------DFFEEIV---SSISDFKFSDNGRYI 295 (460)
T ss_pred hhhhhhhc--------------cC--chhhhhhccCcc----cc-----------hhHHHHh---hhhcceEEcCCCcEE
Confidence 87632110 00 000000000000 00 0000000 134555555555555
Q ss_pred EEEeCCeEEEEEcCCcc-eeeEeecCC------------CCCE---EEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001403 944 LLVHETHLAIYEAEELT-CLKQWFPIS------------SVPI---SQATFSCDCRMVFTSFVDGTLSIHEASN 1001 (1084)
Q Consensus 944 a~~~d~~i~vwd~~~~~-~~~~~~~~h------------~~~v---~~l~fs~dg~~l~t~~~dg~i~vwd~~~ 1001 (1084)
++-.--+|++||+...+ ++.+ .+-| +..| ..+.||.|.+.+.+|+.....-++-+.+
T Consensus 296 lsRdyltvkiwDvnm~k~pikT-i~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 296 LSRDYLTVKIWDVNMAKNPIKT-IPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred EEeccceEEEEecccccCCcee-echHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 55444555555554322 2222 1111 2233 3578999999999999888888887443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-05 Score=82.85 Aligned_cols=232 Identities=14% Similarity=0.151 Sum_probs=143.3
Q ss_pred CeeecCCCCCccccccCcCC---CCCCCccEEEecCCCCEEEEEe---CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcC
Q 001403 772 PRLYQPRHGPQFMVNDTTDS---NSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNP 845 (1084)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~---~~~~~v~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 845 (1084)
+.+||..+-.......++.. ........+++|.||+++.+.. ..+|.|.|+..++.+.++..+. . . +.+ |
T Consensus 69 v~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-C-~-~iy-P 144 (342)
T PF06433_consen 69 VEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-C-W-LIY-P 144 (342)
T ss_dssp EEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-E-E-EEE-E
T ss_pred EEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-E-E-EEE-e
Confidence 44555555544444444321 1123445679999999999987 4789999999999998887432 1 1 122 2
Q ss_pred CCCcEEEEEeCCCeEEEEEcC-Cceeeeee----cccccCE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeee
Q 001403 846 HDNNVIAIGMDDSTILIYNAR-SSEVISKL----EGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ 919 (1084)
Q Consensus 846 ~d~~~la~g~~dg~i~iwd~~-~~~~~~~l----~~h~~~V-~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 919 (1084)
...+-+.+.+.||++.-..+. .|+...+. ..-.+++ ..-+++..+..++..+.+|.|+--|+............
T Consensus 145 ~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~ 224 (342)
T PF06433_consen 145 SGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWS 224 (342)
T ss_dssp EETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEE
T ss_pred cCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccc
Confidence 133457788889999999888 45543221 1111222 23344555566666789999999999887654444333
Q ss_pred cCCCCc---c-CCCCceEEEEccCCCEEEE----EeCC-------eEEEEEcCCcceeeEeecCCCCCEEEEEEccCCC-
Q 001403 920 TPDGVM---T-LAPSETHIQFHKDQTRFLL----VHET-------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCR- 983 (1084)
Q Consensus 920 ~~~~~~---~-~~~~v~~~~~s~dg~~la~----~~d~-------~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~- 983 (1084)
...... . -.+.-.-+++++....|.+ +.++ .|-++|+.+++.+.++... .++.+|..|.|.+
T Consensus 225 ~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P 302 (342)
T PF06433_consen 225 LLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKP 302 (342)
T ss_dssp SS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-
T ss_pred ccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCc
Confidence 221110 0 0134567889887766665 2222 4888899999999987654 3688999999876
Q ss_pred EEEEE-eCCCcEEEEEcCCCceeEEec
Q 001403 984 MVFTS-FVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 984 ~l~t~-~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
+|++. ..++.+.+||..+|+.+.++.
T Consensus 303 ~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 303 LLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 55444 457899999999999998887
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-05 Score=82.15 Aligned_cols=221 Identities=18% Similarity=0.150 Sum_probs=141.7
Q ss_pred EEEEcC-CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEee-cCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001403 393 RVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS-APCKQISVITCGDDKTIKVWDAVTGSRT 470 (1084)
Q Consensus 393 ~v~fsp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s-~d~~~l~l~s~~~d~~i~vwd~~~g~~~ 470 (1084)
+++|.+ +|.++++-...+.|..|+..+++... +... . ...+++. +++. ++.+... .+.++|..+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~~~-~-~~G~~~~~~~g~---l~v~~~~-~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----IDLP-G-PNGMAFDRPDGR---LYVADSG-GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EESS-S-EEEEEEECTTSE---EEEEETT-CEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----EecC-C-CceEEEEccCCE---EEEEEcC-ceEEEecCCCcEE
Confidence 578888 67777776678999999999875321 2112 2 6677777 6655 4445544 4566699998654
Q ss_pred eEecc-----CCCcEEEEeecccCCCcEEEEEecC--------CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEE
Q 001403 471 YSFEG-----HGAPVYSLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 537 (1084)
Q Consensus 471 ~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 537 (1084)
..... .....+.+++ +++|.+.++.... |.|..++.+ ++ .......-.....++|+||++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~v--d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAV--DPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE---TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEE--cCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCcchhee
Confidence 33332 3456778888 4567777766543 456666655 23 222222334567899999999887
Q ss_pred EEeeCCCCCeeEEEecCCCce--E--eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCC
Q 001403 538 SCGTSKEGESFLVEWNESEGA--I--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 613 (1084)
Q Consensus 538 ~~~~~~~~~~~i~~wd~~~~~--~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 613 (1084)
.+.. ..+.|..+++.... . ...+.......+....+++..+|+..++....+.|.+++.. |+.+..+.....
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~ 225 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP 225 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC
Confidence 6543 25568888875321 1 12222112111347889999999988888889999999987 888888886633
Q ss_pred CCCcceEEEe-cCCCEEEEEE
Q 001403 614 LPENPRICFN-KNGTLLAVIA 633 (1084)
Q Consensus 614 ~~~v~~v~~s-~~~~~l~~~~ 633 (1084)
.+.+++|. ++.+.|++.+
T Consensus 226 --~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 226 --RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --SEEEEEEESTTSSEEEEEE
T ss_pred --CEEEEEEECCCCCEEEEEe
Confidence 58899995 6767666654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-07 Score=102.81 Aligned_cols=294 Identities=13% Similarity=0.153 Sum_probs=186.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCc-cccceeeeeccc--ccEeEEEeecCCCcE-EEEEEeCCCcEEEEE
Q 001403 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHV--GNVNDLAFSAPCKQI-SVITCGDDKTIKVWD 463 (1084)
Q Consensus 388 ~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~-~~~~~~~l~~h~--~~V~~l~~s~d~~~l-~l~s~~~d~~i~vwd 463 (1084)
.+++.++..+|.|+-+|.++.-| +.+-|+...- ..+ .-.|. -.|-.+.|+|..... .+++.+ ...-.+|+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr----~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwn 97 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPR----WLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWN 97 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCce----eeeccCcchhcceecccCCCCceeEEecC-cchhhhhh
Confidence 35788899999999999999988 6666776432 222 11232 246778898875432 455555 45567899
Q ss_pred CCCC---ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE-eecCCCCeEEEEEEcCCCCEEEEE
Q 001403 464 AVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSC 539 (1084)
Q Consensus 464 ~~~g---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~ 539 (1084)
+... ..-..+.+|...|+.+.|++.. ...+++++.|-.+..||+++..... .+..-......++|+-....+.+.
T Consensus 98 lA~ss~~aIef~lhghsraitd~n~~~q~-pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLHGHSRAITDINFNPQH-PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS 176 (1081)
T ss_pred hhcCCccceEEEEecCccceeccccCCCC-CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence 8633 3345678899999999998753 3689999999999999998865433 333334455677887644444333
Q ss_pred eeCCCCCeeEEEecCCCc-eEeeeeeccccccCceEEEEEcCC-CCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCc
Q 001403 540 GTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 617 (1084)
Q Consensus 540 ~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 617 (1084)
+. ...|.+||.+.| .++..+++|. ..|..+.|..- ...+.+.+.||+|+.||............... ..+
T Consensus 177 sh----g~~i~vwd~r~gs~pl~s~K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~-~pi 248 (1081)
T KOG0309|consen 177 SH----GNDIFVWDLRKGSTPLCSLKGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN-FPI 248 (1081)
T ss_pred cc----CCceEEEeccCCCcceEEecccc---eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecccc-Ccc
Confidence 33 334999999865 5667777766 77888887643 35678889999999999875433222111111 124
Q ss_pred ceEEEecCCC--EEEEEEC---------CCeEEEEEcCCC-CeeeeccccccceeEEEEcCCCceeeeeccCceeEecCC
Q 001403 618 PRICFNKNGT--LLAVIAN---------ENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 685 (1084)
Q Consensus 618 ~~v~~s~~~~--~l~~~~~---------dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~ 685 (1084)
..-.+.|-|. ++.-.-. ++....|+..++ +++..+.+|.+.|....|....... ++
T Consensus 249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~------------~d 316 (1081)
T KOG0309|consen 249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECD------------GD 316 (1081)
T ss_pred eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccccc------------CC
Confidence 4444555332 2111111 222233443333 6788888998888766654322211 11
Q ss_pred CCCCCCccceecccCccccccce
Q 001403 686 PKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 686 ~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
.....-.+++-+.|.++++|.+.
T Consensus 317 ~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 317 YDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred CCccceeEEEeecCCceEeeecc
Confidence 11223358999999999999865
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.3e-05 Score=81.22 Aligned_cols=184 Identities=14% Similarity=0.168 Sum_probs=121.5
Q ss_pred ccEEEec-CCCCEEEEEeCCeEEEEEcCCceeEEEEcC-----CCCCeEEEEEcCCCCcEEEEEeCC--------CeEEE
Q 001403 797 VPCFALS-KNDAYLFSASGGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAIGMDD--------STILI 862 (1084)
Q Consensus 797 v~~l~~s-~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~la~g~~d--------g~i~i 862 (1084)
...+++. +++.+ +.+..+.+.++|..+++....... .....+.+++.| +|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l-~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRL-YVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEE-EEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEE-EEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEE
Confidence 6677777 66555 445555566669988865443332 335678999999 88877776544 56777
Q ss_pred EEcCCceeeeeecccccCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCc--eeeeeeeecCCCCccCCCCceEEEEccC
Q 001403 863 YNARSSEVISKLEGHSKRVTGLVFSDALNILV-SSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKD 939 (1084)
Q Consensus 863 wd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~-s~s~dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~d 939 (1084)
++.. ++...... .-...+.++|+||++.|. +-+..+.|..+++.... ......+....... +..-.+++..+
T Consensus 120 ~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---g~pDG~~vD~~ 194 (246)
T PF08450_consen 120 IDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP---GYPDGLAVDSD 194 (246)
T ss_dssp EETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS---CEEEEEEEBTT
T ss_pred ECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC---cCCCcceEcCC
Confidence 7777 55433333 455678999999998765 56677889999986432 22223332222221 13668999999
Q ss_pred CCEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEc-cCCCEEEEEe
Q 001403 940 QTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSF 989 (1084)
Q Consensus 940 g~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~ 989 (1084)
|++.++. ..+.|.+++.. |+.+..+..+ ...+++++|. +|.+.|+..+
T Consensus 195 G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 195 GNLWVADWGGGRIVVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp S-EEEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred CCEEEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 9987774 68899999988 8888776654 4589999994 6766666554
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00018 Score=70.06 Aligned_cols=135 Identities=13% Similarity=-0.020 Sum_probs=89.1
Q ss_pred cEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccC
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN 571 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~ 571 (1084)
.+++.|+..+.+.--|..+++...+..... ++.+-+.- -|++++.+.. ++.+++.+.++|.....+.... .
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~-RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~---~ 94 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGV-RIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILE---T 94 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCc-eeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehh---h
Confidence 466777777777777777766655433222 33333322 4667777776 5559999999998887776544 2
Q ss_pred ceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec-CCCEEEEEECCCeE
Q 001403 572 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRI 638 (1084)
Q Consensus 572 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i 638 (1084)
--......+++..+.+|+.|++.+..|..+...+...+..+.. ..+-+..| ++.+ .++...|.+
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sl-y~a~t~G~v 159 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSL-YAAITAGAV 159 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceE-EEEeccceE
Confidence 2223456788999999999999999999999999887766553 23344555 4433 333333443
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.8e-06 Score=79.05 Aligned_cols=241 Identities=12% Similarity=0.049 Sum_probs=148.6
Q ss_pred CCEEEEEe-CCeEEEEEcCCceeEEE-EcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEE
Q 001403 806 DAYLFSAS-GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 883 (1084)
Q Consensus 806 g~~l~~~s-dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 883 (1084)
.-+||.|+ .|...+|...+.+.... ...+...|+-+.---+...-+..++.|.++++.+++-+.....+.-..-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 34677765 69999999986654333 23333333211111112234566788888888888755433222211123889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeee-eecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcce
Q 001403 884 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS-LQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC 961 (1084)
Q Consensus 884 l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~ 961 (1084)
+++++|++++++.+....|..|.++......... ..... ..-.+..||.....+|++ .||++.|||++....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~------D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS------DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC------CCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 9999999999999999999999998754333221 11111 134678999999999984 899999999986543
Q ss_pred ee----EeecCCCCCEEEEEEccCCC--EEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCC
Q 001403 962 LK----QWFPISSVPISQATFSCDCR--MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1035 (1084)
Q Consensus 962 ~~----~~~~~h~~~v~~l~fs~dg~--~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~ 1035 (1084)
.. ...+.|.+.+..+.||+-|. +|+..-.-+.+.+-|++++.-...+....-....+...+++-. .|.- ++
T Consensus 238 pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt--~f~~-~n 314 (344)
T KOG4532|consen 238 PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGT--NFNN-EN 314 (344)
T ss_pred chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccc--cccC-CC
Confidence 32 22445899999999998653 4555555678999999999776666533322221112224432 2332 23
Q ss_pred CEEEEEeCCCcEEEEcCCCCC
Q 001403 1036 TQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1036 ~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
..+-+.. .-++.-|++....
T Consensus 315 ~s~~v~~-e~~~ae~ni~srs 334 (344)
T KOG4532|consen 315 ESNDVKN-ELQGAEYNILSRS 334 (344)
T ss_pred ccccccc-chhhheeeccccc
Confidence 3333332 2355667765543
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-05 Score=83.23 Aligned_cols=261 Identities=14% Similarity=0.167 Sum_probs=155.8
Q ss_pred ceEEEEcCCCceeeee--ccc-ccCccccccceEEEEEcCCccccceeeeecCCC----CCeEEEEEcCCCCEEEEEe--
Q 001403 337 PMSMDFHPVQHTLLLG--LWD-VNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG----VSVNRVVWSPDGSLLGVAY-- 407 (1084)
Q Consensus 337 V~~v~~spdg~~las~--~~d-~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~----~~V~~v~fspdg~~las~~-- 407 (1084)
.-.+.+||||+.+.+. .|. ..-|+. .-.|.+||..+.....+..+..+|. ......++|.||+++.+..
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~R--tDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T 115 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGER--TDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT 115 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEE--EEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES
T ss_pred CCceeECCCCCEEEEEEEEEeccccccc--eeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccC
Confidence 3457789999999872 111 111222 3679999999876665554443322 2334578999999998874
Q ss_pred CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC-CCceeeEec----cCCCcEE-
Q 001403 408 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFE----GHGAPVY- 481 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~-~g~~~~~~~----~h~~~v~- 481 (1084)
-...|.|-|+..++.+.. +. -.+ |.-.-|.+.. -+.+-+.||++.-..+. .|+...+.. .-.+++.
T Consensus 116 Pa~SVtVVDl~~~kvv~e---i~-~PG---C~~iyP~~~~-~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~ 187 (342)
T PF06433_consen 116 PATSVTVVDLAAKKVVGE---ID-TPG---CWLIYPSGNR-GFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFE 187 (342)
T ss_dssp SSEEEEEEETTTTEEEEE---EE-GTS---EEEEEEEETT-EEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S
T ss_pred CCCeEEEEECCCCceeee---ec-CCC---EEEEEecCCC-ceEEEecCCceEEEEECCCCCEeEeeccccCCCCccccc
Confidence 456799999999876552 22 112 2222233322 46777779998888877 565543221 1112221
Q ss_pred EEeecccCCCcEEEEEecCCeEEEEECCCCCceEe--ecCC------C----CeEEEEEEcCCCCEEEEEeeC------C
Q 001403 482 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAP------G----LGCTRMAYSANGRRLFSCGTS------K 543 (1084)
Q Consensus 482 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~------~----~~i~~~~~s~d~~~l~~~~~~------~ 543 (1084)
.-++ ...+..++-.+.+|.|+--|+........ +..- . +...-+++++..++|++.-.. +
T Consensus 188 ~~~~--~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHK 265 (342)
T PF06433_consen 188 HPAY--SRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHK 265 (342)
T ss_dssp --EE--ETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TT
T ss_pred ccce--ECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCcc
Confidence 1112 12334566688899998888876654331 1110 1 123457888777666654322 2
Q ss_pred CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCC-EEEEEE-CCCcEEEEECCCCeEEEEEcCCCC
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAG-DDHVIKIWDMNKVQLLTTIDAGGG 613 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 613 (1084)
++...|.++|+.+++.+.++.... ++.++..+.+.+ +|++.+ .++.+.+||..+|+.+..+..-+.
T Consensus 266 dpgteVWv~D~~t~krv~Ri~l~~----~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~ 333 (342)
T PF06433_consen 266 DPGTEVWVYDLKTHKRVARIPLEH----PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGE 333 (342)
T ss_dssp S-EEEEEEEETTTTEEEEEEEEEE----EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SS
T ss_pred CCceEEEEEECCCCeEEEEEeCCC----ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCC
Confidence 334569999999999999998644 577899988765 555544 579999999999999999875544
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.7e-06 Score=79.46 Aligned_cols=190 Identities=10% Similarity=-0.025 Sum_probs=128.3
Q ss_pred EEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-eee-e-eecccccCEEEEE
Q 001403 809 LFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVI-S-KLEGHSKRVTGLV 885 (1084)
Q Consensus 809 l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~-~~~-~-~l~~h~~~V~~l~ 885 (1084)
+++..|.++++++++-+..........-...++++++ |++++++.++...|..|.++.. +.+ . .....++.-.+..
T Consensus 132 ~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 132 NIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred eeccCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence 3334467777777764433222221112378999999 9999999999999999999763 322 2 2233455567889
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCE--EEEE-eCCeEEEEEcCCccee
Q 001403 886 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR--FLLV-HETHLAIYEAEELTCL 962 (1084)
Q Consensus 886 ~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~--la~~-~d~~i~vwd~~~~~~~ 962 (1084)
|+.....+|++..||++.|||+....... ...........+.+..+.|++-|.+ |..+ .-+.+.+.|++++...
T Consensus 211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm---~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTCAIYDVRNMATPM---AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred eccCcceEEEEecCCcEEEEEecccccch---hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 99999999999999999999998743222 1111222223468999999987643 3333 4567999999988765
Q ss_pred eEeecC------C-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 001403 963 KQWFPI------S-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1003 (1084)
Q Consensus 963 ~~~~~~------h-~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~ 1003 (1084)
..+... | ...|..-+|+.++..+.+.+++ .+.-|++.+..
T Consensus 288 q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 288 QVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred eEEecCccccccccccccccccccCCCcccccccch-hhheeeccccc
Confidence 543322 3 2348888999988888877655 46667776653
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.2e-06 Score=85.21 Aligned_cols=194 Identities=13% Similarity=0.090 Sum_probs=121.9
Q ss_pred CCCEEEEE-eCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee-cccc---c
Q 001403 805 NDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHS---K 879 (1084)
Q Consensus 805 dg~~l~~~-sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l-~~h~---~ 879 (1084)
++..++++ .++.+..||..+|+.+..+............ .+..+++++.++.++.+|..+|+.+... .... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee---cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 45555555 5899999999999998887753321222222 2345666778889999999999998874 3221 1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCcc--CCCCceEEEEccCCCEEEEEeCCe-EEEEEc
Q 001403 880 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT--LAPSETHIQFHKDQTRFLLVHETH-LAIYEA 956 (1084)
Q Consensus 880 ~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~dg~~la~~~d~~-i~vwd~ 956 (1084)
.........++..++.+..++.|..+|.++|+..-............ ....+..-....++..+++..++. +.+ |+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~ 190 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DL 190 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ET
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-EC
Confidence 12233333348888888889999999999988654443322221110 000122333334554444456665 555 99
Q ss_pred CCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeE
Q 001403 957 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1006 (1084)
Q Consensus 957 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~ 1006 (1084)
.+++.+.... ...+.. ....++..|+.++.++.|..||+.+|+.+.
T Consensus 191 ~tg~~~w~~~---~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 191 ATGEKLWSKP---ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp TTTEEEEEEC---SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCCCEEEEec---CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 9999664322 222222 245677888888899999999999998874
|
... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.2e-08 Score=107.51 Aligned_cols=194 Identities=18% Similarity=0.226 Sum_probs=144.0
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCC--cE
Q 001403 825 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA--QI 902 (1084)
Q Consensus 825 ~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg--~I 902 (1084)
.+..+++..+....+|++|+. +.+.|++|+..|.|++|++.+|.......+|.++|+.+.-+-||.++.+.+.-. ..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 344566777888899999999 889999999999999999999999999999999999999999998887665433 46
Q ss_pred EEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCC---CCCEEEEEE
Q 001403 903 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPIS---SVPISQATF 978 (1084)
Q Consensus 903 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h---~~~v~~l~f 978 (1084)
.+|++.+-- .....+. ...++.||...+.-+.| ......+||+.++..+.+++.+. +..-....|
T Consensus 1170 aLW~~~s~~----~~~Hsf~-------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1170 ALWDASSTG----GPRHSFD-------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred HHhcccccc----Ccccccc-------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence 799998711 1122222 45688999886665665 44678999999999887765443 233367889
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCceeEEecccc-ccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCC
Q 001403 979 SCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA-YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1053 (1084)
Q Consensus 979 s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~ 1053 (1084)
||+..+++ .||. +||++..+-+.+|.... +.. =.||| +|+.++.-+ .|||+.
T Consensus 1239 sP~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~~~~------------G~FHP-~g~eVIINS-----EIwD~R 1291 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDGV--LWDVRIPEAIHRFDQFTDYGG------------GGFHP-SGNEVIINS-----EIWDMR 1291 (1516)
T ss_pred CCCcceEe---eCce--eeeeccHHHHhhhhhheeccc------------ccccC-CCceEEeec-----hhhhhH
Confidence 99998877 5663 79999887777665322 222 24888 477776654 467764
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.5e-05 Score=85.54 Aligned_cols=275 Identities=13% Similarity=0.179 Sum_probs=152.6
Q ss_pred cCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCcc
Q 001403 343 HPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD 422 (1084)
Q Consensus 343 spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~ 422 (1084)
||||++++....-...-..-..+.+.|||+++....... .....+....|||||+++|.... +.|.+++..+++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~----~~~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT----PPPPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-----EETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc----CCccccccceeecCCCeeEEEec-CceEEEECCCCCe
Confidence 799999988321111111112378999999985443221 12568899999999999999864 5699999877743
Q ss_pred ccceeeeec-------c---------cccEeEEEeecCCCcEEEEEEeCCCc----------------------------
Q 001403 423 ARQQLEIDA-------H---------VGNVNDLAFSAPCKQISVITCGDDKT---------------------------- 458 (1084)
Q Consensus 423 ~~~~~~l~~-------h---------~~~V~~l~~s~d~~~l~l~s~~~d~~---------------------------- 458 (1084)
.+. +..| - -+.-..+.|||||+++.++... +..
T Consensus 76 ~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d-~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 76 TQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD-EREVPEYPLPDYSPPDSQYPEVESIRYPKAG 152 (353)
T ss_dssp EES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE--TTS-EEEEEEESSSTESS-EEEEEE--BTT
T ss_pred EEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC-CcCCceEEeeccCCccccCCcccccccCCCC
Confidence 321 1222 0 1123568899999953333222 222
Q ss_pred -------EEEEECCCCceee-Ee----ccCCCcEEEEeecccCCCcEEEE--EecCC---eEEEEECCCCCceEeecC-C
Q 001403 459 -------IKVWDAVTGSRTY-SF----EGHGAPVYSLCPHAKENIHFIFS--ISVDG---KIKAWLYDSLGARVDYDA-P 520 (1084)
Q Consensus 459 -------i~vwd~~~g~~~~-~~----~~h~~~v~~~~~~~~~~~~~l~s--~s~dg---~i~iwd~~~~~~~~~~~~-~ 520 (1084)
+.|+|+++++... .. ..-..-+..+.|.+ ++..++. ...+. .+.++|..++........ .
T Consensus 153 ~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~--d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~ 230 (353)
T PF00930_consen 153 DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP--DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETS 230 (353)
T ss_dssp S---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE--TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEES
T ss_pred CcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC--CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecC
Confidence 2334544444321 11 12233456666744 3342332 23332 256667766555433322 1
Q ss_pred CCeE---EEEEEc-CCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCce-EEEEEcCCCCEEEE-EEC----
Q 001403 521 GLGC---TRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV-SVVHFDTAKDQILA-AGD---- 590 (1084)
Q Consensus 521 ~~~i---~~~~~s-~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~-~~~---- 590 (1084)
...+ ....+. +++..++..+. ++|-..|++++..++.......+ . -.| ..+.++++++.++. +..
T Consensus 231 ~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G-~---~~V~~i~~~d~~~~~iyf~a~~~~p~ 305 (353)
T PF00930_consen 231 DGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTSG-D---WEVTSILGWDEDNNRIYFTANGDNPG 305 (353)
T ss_dssp SSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-S-S---S-EEEEEEEECTSSEEEEEESSGGTT
T ss_pred CcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccccC-c---eeecccceEcCCCCEEEEEecCCCCC
Confidence 2222 245554 88888877776 67788899999988875533333 2 356 34778888877765 443
Q ss_pred CCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEEC
Q 001403 591 DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 634 (1084)
Q Consensus 591 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 634 (1084)
...|+.-++..+.....+...... ...+.|||+|++++....
T Consensus 306 ~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 306 ERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred ceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence 335666677733445555544332 148999999998876544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.5e-05 Score=89.60 Aligned_cols=105 Identities=12% Similarity=0.108 Sum_probs=76.1
Q ss_pred EecCCCCEEEEEeCCeEEEEEcCC-----ceeEEEEcCCCCCeEEEEEcCCCCcEEEEE-eCCCeEEEEEcCCcee----
Q 001403 801 ALSKNDAYLFSASGGVISLYIVMT-----FKTILTIMPPSPTATSLAFNPHDNNVIAIG-MDDSTILIYNARSSEV---- 870 (1084)
Q Consensus 801 ~~s~dg~~l~~~sdg~i~vwd~~~-----~~~~~~~~~~~~~i~~l~~s~~d~~~la~g-~~dg~i~iwd~~~~~~---- 870 (1084)
++.++|++... .++.|.+.|..+ .+.+..+. -......++++| ||++++++ ..+.+|.|+|+.+.+.
T Consensus 283 a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 283 EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 34567887665 467899999988 34444444 445678899999 77766655 4588999999987542
Q ss_pred --------eeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001403 871 --------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 871 --------~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~ 909 (1084)
+.+.+- ...-...+|.++|....|-.-|..|..||+..
T Consensus 360 ~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 KIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333332 22334578999999888999999999999986
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.8e-05 Score=82.33 Aligned_cols=305 Identities=12% Similarity=0.090 Sum_probs=159.6
Q ss_pred cCCCCEEEEEeeCC-----CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeE
Q 001403 530 SANGRRLFSCGTSK-----EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 604 (1084)
Q Consensus 530 s~d~~~l~~~~~~~-----~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 604 (1084)
|||+++++...... +..+.+.++|+.+++....... . ..+....|+|+|+.++... ++.|++++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---cccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 57888887744211 1245589999999877655544 2 5788899999999998886 57899999988855
Q ss_pred EEEEcCCCC---------------CCCcceEEEecCCCEEEEEECC-CeEEEEEcC---CCCeeeeccccccceeEEEEc
Q 001403 605 LTTIDAGGG---------------LPENPRICFNKNGTLLAVIANE-NRIKILETP---ESNSVDAAGVLSDNLRKLSVN 665 (1084)
Q Consensus 605 ~~~~~~~~~---------------~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~~---~~~~~~~~~~~~~~i~~~~~~ 665 (1084)
.+....... ...-..+.||||+++||....| ..++.+.+. .... .-..+..+.+.
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~YP 149 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRYP 149 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE--
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCcccccccC
Confidence 443321100 1223578899999999887553 344433322 1110 00011111211
Q ss_pred CCCceeeeeccCceeEecCCCCCCCCccceecccCc--cccccceeecCccceeeccC--CccccceEEEEEEecCCCeE
Q 001403 666 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK--SEVEKPLFARPSECQSLLLP--SKVKANKISRLTYNNGGQAI 741 (1084)
Q Consensus 666 p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~--i~~w~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~s~~g~~l 741 (1084)
. .|..... +.++++..+... .+..+ .......+..+.|.++++.+
T Consensus 150 k----------------------------~G~~np~v~l~v~~~~~~~~~---~~~~~~~~~~~~~yl~~v~W~~d~~~l 198 (353)
T PF00930_consen 150 K----------------------------AGDPNPRVSLFVVDLASGKTT---ELDPPNSLNPQDYYLTRVGWSPDGKRL 198 (353)
T ss_dssp B----------------------------TTS---EEEEEEEESSSTCCC---EE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred C----------------------------CCCcCCceEEEEEECCCCcEE---EeeeccccCCCccCcccceecCCCcEE
Confidence 0 1111111 223333222111 11111 12245678899999999855
Q ss_pred EEeecC---CceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEec-CCCCEEEEEe--CC
Q 001403 742 FALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSAS--GG 815 (1084)
Q Consensus 742 ~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~dg~~l~~~s--dg 815 (1084)
++.-.+ ..+. +.+.|..++.+.........+--.......+. +++..++..+ +|
T Consensus 199 ~~~~~nR~q~~~~--------------------l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G 258 (353)
T PF00930_consen 199 WVQWLNRDQNRLD--------------------LVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDG 258 (353)
T ss_dssp EEEEEETTSTEEE--------------------EEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTS
T ss_pred EEEEcccCCCEEE--------------------EEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCC
Confidence 444333 2222 22334444443222222111122233456665 7777666655 44
Q ss_pred --eEEEEEcCCceeEEEEcCCCCCeEE-EEEcCCCCcEEEEEeCCC----eEEEEEcCCceeeeeecccccCEEEEEEcC
Q 001403 816 --VISLYIVMTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFSD 888 (1084)
Q Consensus 816 --~i~vwd~~~~~~~~~~~~~~~~i~~-l~~s~~d~~~la~g~~dg----~i~iwd~~~~~~~~~l~~h~~~V~~l~~sp 888 (1084)
.|.+++..++. ...+....-.|.. +.++++++.+..++..++ .|+.-++.++..+..+....+.-..+.|||
T Consensus 259 ~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Sp 337 (353)
T PF00930_consen 259 YRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSP 337 (353)
T ss_dssp SEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-T
T ss_pred CcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECC
Confidence 46777776665 3455545556744 778885555666676533 666667772333445543333336899999
Q ss_pred CCCEEEEEe
Q 001403 889 ALNILVSSG 897 (1084)
Q Consensus 889 d~~~l~s~s 897 (1084)
|+++++-..
T Consensus 338 dg~y~v~~~ 346 (353)
T PF00930_consen 338 DGKYYVDTY 346 (353)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEE
Confidence 999988543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00072 Score=65.93 Aligned_cols=102 Identities=7% Similarity=-0.018 Sum_probs=73.4
Q ss_pred CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecC
Q 001403 546 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 625 (1084)
Q Consensus 546 ~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 625 (1084)
.+.+.-.|..+|+.+..-... ..+.+-+.- -|++++.|...|.+++.+..+|.....+...+... ......++
T Consensus 32 s~~~~avd~~sG~~~We~ilg----~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk--~~a~~d~~ 104 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAILG----VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK--VRAQCDFD 104 (354)
T ss_pred CceEEEecCCCCcEEeehhhC----ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhc--cceEEcCC
Confidence 455777788888776443221 233332222 46789999999999999999998887776544321 23456778
Q ss_pred CCEEEEEECCCeEEEEEcCCCCeeeeccc
Q 001403 626 GTLLAVIANENRIKILETPESNSVDAAGV 654 (1084)
Q Consensus 626 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 654 (1084)
+..+.+++.|++.+..|..+..++...+.
T Consensus 105 ~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 105 GGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred CceEEEecCCCcEEEecccccceEEeccc
Confidence 99999999999999999998877776553
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00017 Score=85.16 Aligned_cols=117 Identities=18% Similarity=0.240 Sum_probs=82.3
Q ss_pred CccEEEecCCCCEEEEEe-----C-CeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEe---CCCeEEEEEcC
Q 001403 796 AVPCFALSKNDAYLFSAS-----G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DDSTILIYNAR 866 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~s-----d-g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~---~dg~i~iwd~~ 866 (1084)
.-+.+.|.-||+++|+.. + ..|++||.+ |..-.+-....+.-.+++|-| .|.++|+-. .|+.|.+|.-+
T Consensus 197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErN 274 (1265)
T KOG1920|consen 197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERN 274 (1265)
T ss_pred CCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecC
Confidence 345688999999999843 4 679999987 544433333344557899999 888888754 35579998754
Q ss_pred C---ceeeeeecccccCEEEEEEcCCCCEEEE---EeCCCcEEEEeCCCCceee
Q 001403 867 S---SEVISKLEGHSKRVTGLVFSDALNILVS---SGGDAQIFVWDVDGWGIQT 914 (1084)
Q Consensus 867 ~---~~~~~~l~~h~~~V~~l~~spd~~~l~s---~s~dg~I~iwd~~~~~~~~ 914 (1084)
. |+..-.+.....+|..++|+.++..||. ......|++|-+.+..-..
T Consensus 275 GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYL 328 (1265)
T KOG1920|consen 275 GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYL 328 (1265)
T ss_pred CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEE
Confidence 2 2333334444556999999999999997 4455559999998855333
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00012 Score=82.61 Aligned_cols=184 Identities=12% Similarity=0.073 Sum_probs=119.4
Q ss_pred EEecCCCCEEEEEe--CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCC----eEEEEEcCCceeeee
Q 001403 800 FALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARSSEVISK 873 (1084)
Q Consensus 800 l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg----~i~iwd~~~~~~~~~ 873 (1084)
+=++|||+.+...+ .+.+.+.|.++.+...++.-.. ....++++| +++++++.+.+. ++..-+..+...+..
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 34678998776555 4779999999888877765433 446789999 788887776322 233222222111111
Q ss_pred ecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC----CceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE--e
Q 001403 874 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--H 947 (1084)
Q Consensus 874 l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~ 947 (1084)
+.-. .+ -++.+||++... .++.|.+.|..+ +. .....+.... ....+.+||||++++++ .
T Consensus 276 fni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~-~v~~yIPVGK-------sPHGV~vSPDGkylyVankl 341 (635)
T PRK02888 276 FNIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGS-ALTRYVPVPK-------NPHGVNTSPDGKYFIANGKL 341 (635)
T ss_pred EchH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCc-ceEEEEECCC-------CccceEECCCCCEEEEeCCC
Confidence 1100 00 133457887665 367899999887 22 1122233322 35679999999999994 5
Q ss_pred CCeEEEEEcCCcce------------eeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001403 948 ETHLAIYEAEELTC------------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1001 (1084)
Q Consensus 948 d~~i~vwd~~~~~~------------~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~ 1001 (1084)
+.++.|.|+.+.+. ..+... ...-...+|.++|....|-.-|..|..||+..
T Consensus 342 S~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 342 SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 78999999987653 222222 23345678999999888888999999999987
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.4e-07 Score=63.50 Aligned_cols=39 Identities=31% Similarity=0.595 Sum_probs=37.2
Q ss_pred ceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001403 868 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906 (1084)
Q Consensus 868 ~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd 906 (1084)
|+++.++.+|.+.|++++|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.9e-05 Score=81.43 Aligned_cols=251 Identities=12% Similarity=0.151 Sum_probs=148.5
Q ss_pred eecCCCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 461 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~-~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~v 461 (1084)
++.+|...|..++|||..+ ++..++.+..|+|.|+++..+.. .+..| ..+++++|.-|... +++.|...|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5777899999999999877 78888999999999999976555 45556 78999999999876 8999999999999
Q ss_pred EECCCCc-eeeEecc--CCCcEEEEeeccc----CCCcEEEEEecCCeEEEEECCCCCc--eEeecC-CCCeEEEEEEcC
Q 001403 462 WDAVTGS-RTYSFEG--HGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA--RVDYDA-PGLGCTRMAYSA 531 (1084)
Q Consensus 462 wd~~~g~-~~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~-~~~~i~~~~~s~ 531 (1084)
||++..+ .+..+.+ ...+|..++..+. ..|.+++..+.+ +..|++..... ....+. ..+.+.++...+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 9998543 2333322 2344544432211 122344444433 34555433222 222222 244666777777
Q ss_pred CCCEEEEEeeCCCCCee---E-EEecCCCceEeeeee-cc---ccc-cCceEEEEEcCCCCEEEE-EECCCcEEEEECCC
Q 001403 532 NGRRLFSCGTSKEGESF---L-VEWNESEGAIKRTYQ-GL---QLQ-HNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK 601 (1084)
Q Consensus 532 d~~~l~~~~~~~~~~~~---i-~~wd~~~~~~~~~~~-~~---~~~-~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~ 601 (1084)
-.+.++........-.. + .--|-.+|..+..-+ ++ ... ...-..+.-.++.++++. ++..+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 66766665543211111 1 111222333321111 11 000 000112222345566555 55678899999999
Q ss_pred CeEEEEEcCCCCCCCcceEEEec-C-CCEEEEEECCCeEEEEEcC
Q 001403 602 VQLLTTIDAGGGLPENPRICFNK-N-GTLLAVIANENRIKILETP 644 (1084)
Q Consensus 602 ~~~~~~~~~~~~~~~v~~v~~s~-~-~~~l~~~~~dg~i~iwd~~ 644 (1084)
++.++.+.... .|..++... + +.+|++-+ |..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence 99999998763 355655443 3 34566555 4578888654
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.7e-06 Score=83.55 Aligned_cols=195 Identities=15% Similarity=0.198 Sum_probs=121.3
Q ss_pred CCcEEEEEeCCCeEEEEEcCCcee-eeeecc-cccCEEEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCceeeeeeee
Q 001403 847 DNNVIAIGMDDSTILIYNARSSEV-ISKLEG-HSKRVTGLVFSDALNILVSSG-----GDAQIFVWDVDGWGIQTCRSLQ 919 (1084)
Q Consensus 847 d~~~la~g~~dg~i~iwd~~~~~~-~~~l~~-h~~~V~~l~~spd~~~l~s~s-----~dg~I~iwd~~~~~~~~~~~~~ 919 (1084)
-+.-++++..||.+-+++.+.-.. ..+... |.+. .+.+....+..+.+++ .-+..++|++...+ .+.
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~-----t~~ 173 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK-----TLI 173 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccc-----ccc
Confidence 456789999999999998765111 111111 2221 1122223444444332 11235667766522 111
Q ss_pred cCCCCccCCCCceEEEEccCCCEEEE-E-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEcc-CCCEEEEEeCCCcEEE
Q 001403 920 TPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSI 996 (1084)
Q Consensus 920 ~~~~~~~~~~~v~~~~~s~dg~~la~-~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~i~v 996 (1084)
. .+. ....|++++-.|..+.+++ | .||.+.+||.+.......++..|..+|..+-|.| ++..|+++++||.+--
T Consensus 174 ~--~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 174 P--SKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred c--ccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 1 111 1124889999998777666 4 7889999999999888888889999999999999 7889999999999999
Q ss_pred EEcCCCceeEEec---cccccCCCCcccceee--------eEE-EECCCCCCEEEEEeCCCcEEEEc
Q 001403 997 HEASNLEVQCRIL---STAYLRPTTSCLHVYP--------HAI-AAHPLKPTQFAVGLTNGEVYVIE 1051 (1084)
Q Consensus 997 wd~~~~~~~~~~~---~~~~~~~~~~~~~v~~--------~~~-~~~p~d~~~l~~~~~dg~v~vw~ 1051 (1084)
||..+--+-+... ...|+...+-.+.+.. +++ +|+- .|..|++|++-+.|++.+
T Consensus 251 wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV-~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 251 WDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV-LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeec-cCceEEeccccceEEEec
Confidence 9998632222111 2234444332221110 111 2333 378999999999999875
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0082 Score=69.98 Aligned_cols=487 Identities=10% Similarity=0.024 Sum_probs=248.2
Q ss_pred cEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE-eecCCCCeEEEEEEcCC--CC
Q 001403 458 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSAN--GR 534 (1084)
Q Consensus 458 ~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~d--~~ 534 (1084)
.|++.+-. .....+....+.....+.. +...++.++.++.+...++....... ....-...+.|+.++|- ++
T Consensus 471 ~iRl~ss~--~~~~~W~~p~~~ti~~~~~---n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~ 545 (1096)
T KOG1897|consen 471 SIRLVSSA--GLRSEWRPPGKITIGVVSA---NASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAP 545 (1096)
T ss_pred cEEEEcch--hhhhcccCCCceEEEEEee---cceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCC
Confidence 46666633 2333444333332233321 22356666666776666665544211 11223447888888874 33
Q ss_pred ----EEEEEeeCCCCCeeEEEecCCCceEeeee--eccccccCceEEEEEcCCCCEEEEEECCCcEEEE--ECCCCeEEE
Q 001403 535 ----RLFSCGTSKEGESFLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW--DMNKVQLLT 606 (1084)
Q Consensus 535 ----~l~~~~~~~~~~~~i~~wd~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw--d~~~~~~~~ 606 (1084)
.++.|..+ +-.+.+.-..+...+... .+... ...|....|-.|..+|+++..||.+.-| |..+|..-.
T Consensus 546 ~~s~~~aVG~Ws---~~~~~l~~~pd~~~~~~~~l~~~~i-PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd 621 (1096)
T KOG1897|consen 546 NKSRLLAVGLWS---DISMILTFLPDLILITHEQLSGEII-PRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSD 621 (1096)
T ss_pred CcceEEEEEeec---ceEEEEEECCCcceeeeeccCCCcc-chheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcc
Confidence 44544432 111222222222222221 11111 1345555676778899999999998766 555555443
Q ss_pred EEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCC
Q 001403 607 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP 686 (1084)
Q Consensus 607 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~ 686 (1084)
.-..+-++.++.--.|+..++.-+.+..|.-..+|.....-.+..+....-. .-+.++ .+.
T Consensus 622 ~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~-~~c~f~------------------s~a 682 (1096)
T KOG1897|consen 622 RKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVN-HMCPFN------------------SDA 682 (1096)
T ss_pred ccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhh-hhcccc------------------ccc
Confidence 3333333344555567665555455555566666654433222111110000 000111 000
Q ss_pred CCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCccc
Q 001403 687 KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 766 (1084)
Q Consensus 687 s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 766 (1084)
.+|+ ++.+ ..+.+++..++.-.....+.+. -......+++.+....+.+.+....... + ..+..
T Consensus 683 ~~d~--l~~~-~~~~l~i~tid~iqkl~irtvp-----l~~~prrI~~q~~sl~~~v~s~r~e~~~------~--~~~ee 746 (1096)
T KOG1897|consen 683 YPDS--LASA-NGGALTIGTIDEIQKLHIRTVP-----LGESPRRICYQESSLTFGVLSNRIESSA------E--YYGEE 746 (1096)
T ss_pred CCce--EEEe-cCCceEEEEecchhhcceeeec-----CCCChhheEecccceEEEEEecccccch------h--hcCCc
Confidence 1111 2222 1233444433322222222221 1234455666664444444433221110 0 01112
Q ss_pred ceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCC-CCEEEEEe-----------CCeEEEEEcCCceeEEEEcCC
Q 001403 767 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSAS-----------GGVISLYIVMTFKTILTIMPP 834 (1084)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~l~~~s-----------dg~i~vwd~~~~~~~~~~~~~ 834 (1084)
.....++++|.++-+.+...++...+....+.+..|..| +.++++|. .|.|.+|....++.++....+
T Consensus 747 ~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~ 826 (1096)
T KOG1897|consen 747 YEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET 826 (1096)
T ss_pred ceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee
Confidence 222346778877766555555543223334444457777 77777763 277999988774444444332
Q ss_pred --CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 001403 835 --SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 912 (1084)
Q Consensus 835 --~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~ 912 (1084)
.+.+.++..- +|++||. -+..|++|+..+.+.++.-..|..++..+...-.|..++.|.-=+.+.+.-....+.
T Consensus 827 ~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg 902 (1096)
T KOG1897|consen 827 VVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEG 902 (1096)
T ss_pred eeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCC
Confidence 2444444432 5777764 356899999999877777777899999999999999999998888777765554331
Q ss_pred eeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcc------e----eeEeec-------CCCCCEEE
Q 001403 913 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT------C----LKQWFP-------ISSVPISQ 975 (1084)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~------~----~~~~~~-------~h~~~v~~ 975 (1084)
.-....+.. +. .+++++.+-.+..++.+-.+|.+.+....+.. . ...+.. .|..-|..
T Consensus 903 ~f~evArD~--~p---~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~ 977 (1096)
T KOG1897|consen 903 NFEEVARDY--NP---NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQ 977 (1096)
T ss_pred ceEEeehhh--Cc---cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEee
Confidence 111122222 12 37888999888888888777776665543210 0 111111 12333333
Q ss_pred E--EEccCCCEEEEEeCCCcEEEE
Q 001403 976 A--TFSCDCRMVFTSFVDGTLSIH 997 (1084)
Q Consensus 976 l--~fs~dg~~l~t~~~dg~i~vw 997 (1084)
+ ..+|-+..+..|..+|.|-+-
T Consensus 978 ~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 978 LGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred ccccccCCCCcEEEEEccceEEEE
Confidence 1 223444457778889988764
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00021 Score=84.36 Aligned_cols=244 Identities=13% Similarity=0.069 Sum_probs=141.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC
Q 001403 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 467 (1084)
Q Consensus 388 ~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g 467 (1084)
...|.++.|--++.-++.+...|.|.+-|.++...- ....-...|.+++||||++ +++-...++++.+-+ .+-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e----ivg~vd~GI~aaswS~Dee--~l~liT~~~tll~mT-~~f 140 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE----IVGNVDNGISAASWSPDEE--LLALITGRQTLLFMT-KDF 140 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee----eeeeccCceEEEeecCCCc--EEEEEeCCcEEEEEe-ccc
Confidence 368999999999999999999999999998876421 2334566899999999999 555555566665533 222
Q ss_pred ceeeEeccC-----CCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001403 468 SRTYSFEGH-----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 468 ~~~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
.++..-.-+ .+....+.|-... .=+-|+ .|.....+................-+.++|-.||+++++....
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrke---Tqfrgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKE---TQFRGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred cchhccccccccccccccceecccccc---eeeecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe
Confidence 222111101 1111122221100 000000 1111111000000000000111233568999999999885543
Q ss_pred CC-CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE---CCCcEEEEECCC---CeEEEEEcCCCCCC
Q 001403 543 KE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG---DDHVIKIWDMNK---VQLLTTIDAGGGLP 615 (1084)
Q Consensus 543 ~~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~---~~~~~~~~~~~~~~ 615 (1084)
.. +...|++||.+ |..-..-.... +.-.+++|-|.|..+++-. .|+.|.++..+. |+..-.+... ..
T Consensus 217 ~~~~~RkirV~drE-g~Lns~se~~~---~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~d--e~ 290 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-GALNSTSEPVE---GLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLD--EK 290 (1265)
T ss_pred ccCCceeEEEeccc-chhhcccCccc---ccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccc--cc
Confidence 32 23789999977 44432222222 4456789999999998843 566798987643 2222222222 22
Q ss_pred CcceEEEecCCCEEEE---EECCCeEEEEEcCCCCe
Q 001403 616 ENPRICFNKNGTLLAV---IANENRIKILETPESNS 648 (1084)
Q Consensus 616 ~v~~v~~s~~~~~l~~---~~~dg~i~iwd~~~~~~ 648 (1084)
.+..++|+.++..||+ ......|++|-+.+..-
T Consensus 291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred chheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence 3889999999999998 44455699999887643
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.2e-06 Score=86.44 Aligned_cols=256 Identities=14% Similarity=0.080 Sum_probs=175.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC-CCcEEEEECC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAV 465 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-d~~i~vwd~~ 465 (1084)
|.+.|+.+.-+ -.+++.+++.||.++.|.-..-..+.-...+..|.+.|.+++.+-++. ++.|.+. |..++++|++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence 77777777554 467999999999999998765333333335678999999999999998 7888777 9999999988
Q ss_pred CCceeeEe--ccCCCcEEEEeecccC-CC--cEEEEEecCCeEEEEECCCCCc--eEeecCCCCeEEEEEEcCCCCEEEE
Q 001403 466 TGSRTYSF--EGHGAPVYSLCPHAKE-NI--HFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFS 538 (1084)
Q Consensus 466 ~g~~~~~~--~~h~~~v~~~~~~~~~-~~--~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d~~~l~~ 538 (1084)
+-..+.-+ ..-.+.+. |..++ +. ..-++...+|.+.++|-....+ ...-..|..+|..+.+++-+..+++
T Consensus 85 n~DminmiKL~~lPg~a~---wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAE---WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred ccchhhhcccccCCCceE---EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence 65443222 11122222 21121 11 2334445678899998765443 3344567789999999999999888
Q ss_pred EeeCCCCCeeEEEecCCC------ceEeeeeec------cccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE
Q 001403 539 CGTSKEGESFLVEWNESE------GAIKRTYQG------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 606 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~~------~~~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 606 (1084)
... .|.|.-|.... .+....++. .........++.|+|++..+.+-+.|..|++++..+|+.++
T Consensus 162 iD~----~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 162 IDI----SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ccc----cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 743 67799998762 111111111 11123567899999999999999999999999999988776
Q ss_pred EEcCCC-------------------------------CCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeecc
Q 001403 607 TIDAGG-------------------------------GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 653 (1084)
Q Consensus 607 ~~~~~~-------------------------------~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 653 (1084)
.+.... +...-..++|...|++|+.++-= -|++.++.++...+.+.
T Consensus 238 eiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 238 EIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRILG 314 (558)
T ss_pred hhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEEec
Confidence 543210 01112457788888888888764 48899999887776653
|
|
| >PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 | Back alignment and domain information |
|---|
Probab=98.40 E-value=1e-06 Score=83.56 Aligned_cols=133 Identities=22% Similarity=0.284 Sum_probs=97.0
Q ss_pred HHHHHHHhcCcCHHHHHHHhcccc-cccCccccchhhhHHHHhHHHhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHH
Q 001403 38 MKFFEDMILDGKWEDVEQYLSSFT-KVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELA 116 (1084)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~l~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~ 116 (1084)
...++++|++|+++.|++.++... .+... ...+.|.|+.|+|+|++..++..+|+.+.|+.+.|......+.++.+.
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~--~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~ 82 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR--NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLM 82 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc--CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 678999999999999999998752 12111 233889999999999999999999999999999766543557788888
Q ss_pred HHhccccccc--hhccccccCCChHHHHHHHHHHHhhcccCccccccccCCCCc-chHHHHHHHHhHHHH
Q 001403 117 QLLTLDDIRD--HELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIK-RQRLRRLINQSLNWQ 183 (1084)
Q Consensus 117 ~ll~~~~~~~--~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~Ll~qa~~~Q 183 (1084)
.+|...+..+ ...+.... ....|.++.+.+.+.+-...- +| .+.|..++++....+
T Consensus 83 ~lL~~~~~~~~~~s~~~~l~--~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 83 SLLAYPDPEEPLPSPYKELL--SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHHcCCcccccchHHHHHh--ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 9988876554 22222222 236788888888876654322 33 566888888765443
|
RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined []. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.8e-06 Score=84.80 Aligned_cols=212 Identities=12% Similarity=0.145 Sum_probs=143.1
Q ss_pred cccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC--C-ceeeEeccCCCcEEEEeecccCCCcEEEEEec-CCeEEEE
Q 001403 431 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--G-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAW 506 (1084)
Q Consensus 431 ~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~--g-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~iw 506 (1084)
-|.+.|+.+.-+. .+ ++.+++.||.++.|--.. | +.+..+..|-+.|.+++. +-++.++.|.+. |..++++
T Consensus 7 mhrd~i~hv~~tk-a~--fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~--S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AK--FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAV--SYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeeeh-hh--eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhc--cccceeEeeccCcccceeEE
Confidence 4777788776654 34 799999999999998432 2 234556778888888887 447778888777 9999999
Q ss_pred ECCCCCceEee--cCCCCeEEEEEEcCCC--CEEEEEeeCCCCCeeEEEecCCCce-EeeeeeccccccCceEEEEEcCC
Q 001403 507 LYDSLGARVDY--DAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTA 581 (1084)
Q Consensus 507 d~~~~~~~~~~--~~~~~~i~~~~~s~d~--~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~~~v~~~~~s~~ 581 (1084)
|+.+......+ ....+.+. .+...| .-+++.+.- .++.+.++|-.... ....+.+. |..+|..+.+.+.
T Consensus 82 DvEn~DminmiKL~~lPg~a~--wv~skGd~~s~IAVs~~--~sg~i~VvD~~~d~~q~~~fkkl--H~sPV~~i~y~qa 155 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAE--WVTSKGDKISLIAVSLF--KSGKIFVVDGFGDFCQDGYFKKL--HFSPVKKIRYNQA 155 (558)
T ss_pred EeeccchhhhcccccCCCceE--EecCCCCeeeeEEeecc--cCCCcEEECCcCCcCccceeccc--ccCceEEEEeecc
Confidence 99875543222 22222222 222233 223333322 25668999976543 33333332 2489999999999
Q ss_pred CCEEEEEECCCcEEEEECCC------CeEEEEEcC-------CCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCe
Q 001403 582 KDQILAAGDDHVIKIWDMNK------VQLLTTIDA-------GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 648 (1084)
Q Consensus 582 ~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~-------~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 648 (1084)
+..+++....|.|.-|.... .+....+.. ........++.|+|+|..+.+...|..|++++..+++.
T Consensus 156 ~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 156 GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence 99999999999999998873 111111111 11223457899999999999999999999999999977
Q ss_pred eeecc
Q 001403 649 VDAAG 653 (1084)
Q Consensus 649 ~~~~~ 653 (1084)
++.+.
T Consensus 236 vqeiD 240 (558)
T KOG0882|consen 236 VQEID 240 (558)
T ss_pred hhhhh
Confidence 76554
|
|
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-06 Score=89.42 Aligned_cols=118 Identities=19% Similarity=0.300 Sum_probs=99.0
Q ss_pred hHHHHHHHHHhhhhcChHHHHHHHHHhcCCC--------hhHHHHHHHhcCcCHHHHHHHhcccc-cccCccccchhhhH
Q 001403 5 NKDLVFLILQFLNEEGFTESAHMLERESRFY--------FDMKFFEDMILDGKWEDVEQYLSSFT-KVDDNRYSTKIYFE 75 (1084)
Q Consensus 5 ~~~~~rli~q~L~~~g~~~s~~~l~~Es~~~--------~~~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~ 75 (1084)
++=+-|+|..||..+||-++|..|-++|.+. .++..++++|++|+...|+.-.+.-+ .+. +....+-|.
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~ 192 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQ 192 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhH
Confidence 3457899999999999999999999999874 24788999999999999988876531 111 122237799
Q ss_pred HHHhHHHhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhccccc
Q 001403 76 IRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDI 124 (1084)
Q Consensus 76 l~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~ 124 (1084)
+..|.|+||+..+++.+|+.+.++.+.|.......+++....+|.++..
T Consensus 193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~ 241 (389)
T KOG0396|consen 193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKY 241 (389)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccc
Confidence 9999999999999999999999999999987778889999999998654
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00025 Score=75.46 Aligned_cols=174 Identities=14% Similarity=0.097 Sum_probs=90.5
Q ss_pred CeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCC---C-eEEEEEcCC-ceeeeeecccc--cCEEEEEEc
Q 001403 815 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---S-TILIYNARS-SEVISKLEGHS--KRVTGLVFS 887 (1084)
Q Consensus 815 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d---g-~i~iwd~~~-~~~~~~l~~h~--~~V~~l~~s 887 (1084)
..|.-.|+.+|+....+. ....+..+.|||.|..+|+.+-+. . .-|||-+.+ |.....+..|. ..+..=-|+
T Consensus 168 ~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-
T ss_pred ceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccccc
Confidence 446666778777655554 456788999999878888876542 2 236676554 33334443332 234445789
Q ss_pred CCCCEEEEEeC-----CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCC------------
Q 001403 888 DALNILVSSGG-----DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET------------ 949 (1084)
Q Consensus 888 pd~~~l~s~s~-----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~------------ 949 (1084)
|||..|..-+. +..|.-+|+.+++... +.... ....+..++||+++|- |.|.
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~--~~~~p--------~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~ 316 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR--LMEMP--------WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKI 316 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEE--EEEE---------SEEEEEE-TTSSEEEEEE---------------
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceE--EEeCC--------ceeeeEEcCCCCEEEecCCCCCcccccccccee
Confidence 99988875432 4567778888866432 22221 3457788999999987 5432
Q ss_pred ----eEEEEEcCCcceeeEe--------ecCCC-CCEEEEEEccCCCEEEEEe-CCCcEEEEEc
Q 001403 950 ----HLAIYEAEELTCLKQW--------FPISS-VPISQATFSCDCRMVFTSF-VDGTLSIHEA 999 (1084)
Q Consensus 950 ----~i~vwd~~~~~~~~~~--------~~~h~-~~v~~l~fs~dg~~l~t~~-~dg~i~vwd~ 999 (1084)
-|+++++..+...... ..+|. ..=..+.|||||++++-.| ..|...||=+
T Consensus 317 ~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 317 ENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred cCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 4677888766643211 11111 1124679999999876544 5566665533
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.4e-06 Score=92.35 Aligned_cols=180 Identities=16% Similarity=0.182 Sum_probs=130.9
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEE
Q 001403 805 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 883 (1084)
Q Consensus 805 dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 883 (1084)
++..++.|+ ...+..+|+.+.+..+...-..+.++-+.. +++++.+|...|+|.+-|..+.+.++++.+|++.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 344555555 677889999998888877655555655555 6789999999999999999999999999999999987
Q ss_pred EEEcCCCCEEEEEeC---------CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccC--CCEEEEEeCCeEE
Q 001403 884 LVFSDALNILVSSGG---------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD--QTRFLLVHETHLA 952 (1084)
Q Consensus 884 l~~spd~~~l~s~s~---------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~la~~~d~~i~ 952 (1084)
+.. .|++|+++|. |.-|+|||+..-+... .++.+.+ ..-+.|.|. .+..+++..|...
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence 666 5899999985 4568999998733211 2222222 345667775 3334446888888
Q ss_pred EEEcC---CcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 001403 953 IYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 998 (1084)
Q Consensus 953 vwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd 998 (1084)
+-|.. +...-..........+..+++|++|..|+.+..+|.|.+|-
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 88843 22111111222245599999999999999999999999997
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.7e-06 Score=81.26 Aligned_cols=198 Identities=12% Similarity=0.136 Sum_probs=120.9
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee------------eeecccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 001403 838 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI------------SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 905 (1084)
Q Consensus 838 i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~------------~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iw 905 (1084)
++.+.++. ...|+++..++.+..+...++.+. +.+..|+++-.+-+.+--+..++++..||.+.+.
T Consensus 39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSA--EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechh--hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 56666664 456777777776666555444332 3333344433333334446789999999999999
Q ss_pred eCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE------eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEc
Q 001403 906 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWFPISSVPISQATFS 979 (1084)
Q Consensus 906 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs 979 (1084)
+.+.-.... -+....+. .-.+.+.-..+.++.++ .-+..+.|++...+.+..-.. ....|++++-.
T Consensus 117 s~~~~~~~~---~~i~~~~~----~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~h 188 (319)
T KOG4714|consen 117 STDKDLALM---SRIPSIHS----GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCSH 188 (319)
T ss_pred echHHHhhh---hhcccccc----cccccceeecccEEecCCcceEeeccceeeeccccccccccccc-ccccchhhhCC
Confidence 988621111 01111111 12233344455555553 335567777653332221111 13458899988
Q ss_pred cCC-CEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 980 CDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 980 ~dg-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
|.. ..+++|+.||.+.+||.+......+.. .. |...++ .+-|||.++..|.+++.||.+.-||-+.
T Consensus 189 p~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l-----~a--hk~~i~--eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 189 PAQQHLVCCGTDDGIVGLWDARNVAMPVSLL-----KA--HKAEIW--EVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccEEEEecCCCeEEEEEcccccchHHHH-----HH--hhhhhh--heeccCCCchheeEecCCCcEEEEcCCC
Confidence 854 556788889999999999985554333 11 344455 5789999999999999999999998753
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.3e-05 Score=86.55 Aligned_cols=206 Identities=15% Similarity=0.183 Sum_probs=134.7
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccC-EEEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCceee-
Q 001403 842 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQT- 914 (1084)
Q Consensus 842 ~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~spd~~~l~s~s~dg~-----I~iwd~~~~~~~~- 914 (1084)
+|++ ++..+|.|+.+|.|.+.+-. -+.+..++++... |+.+-...+..+|++.+.|++ |+||+++..+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4666 67799999999999988743 4555777777776 555555555579999888765 8999998753222
Q ss_pred eeee---ecCC-CCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcC--Ccceee-EeecCCCCCEEEEEEccCCCEEE
Q 001403 915 CRSL---QTPD-GVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAE--ELTCLK-QWFPISSVPISQATFSCDCRMVF 986 (1084)
Q Consensus 915 ~~~~---~~~~-~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~--~~~~~~-~~~~~h~~~v~~l~fs~dg~~l~ 986 (1084)
..++ +... .......++.+++.|.+-+.+|+| .+|.|..+.-. ..+-.+ .....-..+|++++|-.|++.++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 2222 1111 111123478999999999999998 77888888532 111111 11112278999999999998833
Q ss_pred EEeCCCcEEEEEcCCCceeEE-eccccccCCCCcccceeeeEEEECCCCCCE-EEEEeCCCcEEEEcCCCCCCCcccC
Q 001403 987 TSFVDGTLSIHEASNLEVQCR-ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQ-FAVGLTNGEVYVIEPNEPGDTWAVL 1062 (1084)
Q Consensus 987 t~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~-l~~~~~dg~v~vw~~~~~~~~~~~~ 1062 (1084)
.+.+-..|.+|.+........ .. ..++...|.++++ ++. +++++ +..|.+|+..+.++.|+..
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld----------~~G~~lnCss~~~--~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLD----------NNGISLNCSSFSD--GTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEecceeEEEEecCCCcceeeec----------cCCccceeeecCC--CCccEEEec-CceEEEEcCCCcceeeeec
Confidence 334456799999994441211 22 1224445778885 444 55553 4679999999988888763
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.1e-06 Score=86.36 Aligned_cols=153 Identities=15% Similarity=0.143 Sum_probs=112.7
Q ss_pred EEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-----eeeeeecccccCEE
Q 001403 808 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-----EVISKLEGHSKRVT 882 (1084)
Q Consensus 808 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~-----~~~~~l~~h~~~V~ 882 (1084)
.+++|.+-.+-+-++++|-. +.|. ..+.|.++.|.. .+.++..|..+|.|..+|+..+ .+...+. |.+.|+
T Consensus 227 hfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvt 302 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVT 302 (425)
T ss_pred eecccccceeEEEEeecccc-cccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchh
Confidence 34555577788889887644 2333 567899999998 7889999999999999999874 3444444 889999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcc
Q 001403 883 GLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT 960 (1084)
Q Consensus 883 ~l~~sp-d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~ 960 (1084)
++..-. ++++|.+.+.+|+|++||+.--++.. -+...+||......+. +...+....+++ |.|-..+||.++.|.
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~--~V~qYeGHvN~~a~l~-~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKK--SVMQYEGHVNLSAYLP-AHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhccc--ceeeeecccccccccc-cccccccceEEEccCeeEEEEEecccCc
Confidence 987776 78889999999999999998744322 3677778765332222 234455555555 677889999999999
Q ss_pred eeeEeec
Q 001403 961 CLKQWFP 967 (1084)
Q Consensus 961 ~~~~~~~ 967 (1084)
.+.+...
T Consensus 380 Ll~tipf 386 (425)
T KOG2695|consen 380 LLCTIPF 386 (425)
T ss_pred eeeccCC
Confidence 8887543
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3e-06 Score=85.22 Aligned_cols=149 Identities=15% Similarity=0.115 Sum_probs=113.1
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCcc--ccceeeeecccccEeEEEee
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--ARQQLEIDAHVGNVNDLAFS 442 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~--~~~~~~l~~h~~~V~~l~~s 442 (1084)
..|-+-+++++-.... . .++.|.++.|...+.++..|+.+|.|...|+..+.. .-.. .--.|...|+++..-
T Consensus 234 qqv~L~nvetg~~qsf----~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~L 307 (425)
T KOG2695|consen 234 QQVLLTNVETGHQQSF----Q-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA-QRLYHDSSVTSLQIL 307 (425)
T ss_pred ceeEEEEeeccccccc----c-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce-EEEEcCcchhhhhhh
Confidence 5566667766544322 1 567899999999999999999999999999986521 0111 122588999999887
Q ss_pred c-CCCcEEEEEEeCCCcEEEEECCCCce---eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec
Q 001403 443 A-PCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 518 (1084)
Q Consensus 443 ~-d~~~l~l~s~~~d~~i~vwd~~~g~~---~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 518 (1084)
. +++ +|.+.+.+|+|++||.+.-++ +.+++||-..-..+-++-.+....+++++.|-..|+|.++.+....++.
T Consensus 308 q~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 308 QFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred ccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 7 555 788888999999999986666 8899999776666655556666789999999999999999887776665
Q ss_pred CCC
Q 001403 519 APG 521 (1084)
Q Consensus 519 ~~~ 521 (1084)
.+.
T Consensus 386 f~~ 388 (425)
T KOG2695|consen 386 FPY 388 (425)
T ss_pred CCC
Confidence 443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00036 Score=77.86 Aligned_cols=195 Identities=14% Similarity=0.093 Sum_probs=120.9
Q ss_pred eecccccEeEEEeecCCCcEEEEEEeCC--CcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEE-EEEecCCeEEE
Q 001403 429 IDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKA 505 (1084)
Q Consensus 429 l~~h~~~V~~l~~s~d~~~l~l~s~~~d--~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~i 505 (1084)
+..-...+..-+|+|+++.+..++-... ..+.++|+.+++....+. ..+.-..-.|+| ||+.| ++...||...+
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fsp--DG~~l~f~~~rdg~~~i 264 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSP--DGSKLAFSSSRDGSPDI 264 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCC--CCCEEEEEECCCCCccE
Confidence 3344456777899999996444433333 359999999887654443 222222335644 55554 55667777555
Q ss_pred E--ECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCC
Q 001403 506 W--LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 583 (1084)
Q Consensus 506 w--d~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 583 (1084)
| |+....... +....+.-..-.|+|||+.++..+ ++.|...|++++.+.+...+...... .-..-.|+|||+
T Consensus 265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~riT~~~~----~~~~p~~SpdG~ 338 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVTRLTFSGG----GNSNPVWSPDGD 338 (425)
T ss_pred EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCceeEeeccCC----CCcCccCCCCCC
Confidence 4 555554322 343333444778999999999986 55667789999998776643333222 122668999999
Q ss_pred EEEEEEC-CCc--EEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC
Q 001403 584 QILAAGD-DHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 635 (1084)
Q Consensus 584 ~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 635 (1084)
+++..+. +|. |.+.|..++...+.+.... ....-.|.++++.+...+..
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEeccC
Confidence 9988664 344 6677777666555444322 23456777888777665543
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00036 Score=77.83 Aligned_cols=139 Identities=9% Similarity=-0.005 Sum_probs=101.4
Q ss_pred CCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEE
Q 001403 334 SSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 413 (1084)
Q Consensus 334 ~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~ 413 (1084)
...|.--+++..++|++.|+.- |.+++|+-.++.....+ ..+-...+..+..|++..++|.|+..|.|.
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~---------G~lyl~~R~~~~~~~~~--~~~~~~~~~~~~vs~~e~lvAagt~~g~V~ 101 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSA---------GSVYLYNRHTGEMRKLK--NEGATGITCVRSVSSVEYLVAAGTASGRVS 101 (726)
T ss_pred cceEEEEEeecCCceEEEeccc---------ceEEEEecCchhhhccc--ccCccceEEEEEecchhHhhhhhcCCceEE
Confidence 3467777888899999998765 99999998877665543 334445667778899999999999999999
Q ss_pred EEEccCCccccceee---eecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC----ceeeEeccCCCcEEEEee
Q 001403 414 LYAYHGGSDARQQLE---IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHGAPVYSLCP 485 (1084)
Q Consensus 414 iwd~~~~~~~~~~~~---l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g----~~~~~~~~h~~~v~~~~~ 485 (1084)
|+-++.+........ -..|...|++++|++|+. .+++|...|+|..-.+.+. ...+.+....+.|..+..
T Consensus 102 v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~ 178 (726)
T KOG3621|consen 102 VFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDY 178 (726)
T ss_pred eehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeec
Confidence 998887543222111 113678999999999999 7999999999998887762 112334445566666654
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.1e-06 Score=57.27 Aligned_cols=39 Identities=33% Similarity=0.494 Sum_probs=36.8
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 001403 825 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN 864 (1084)
Q Consensus 825 ~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd 864 (1084)
|+++.++.+|...|++++|+| ++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467889999999999999999 899999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00016 Score=74.72 Aligned_cols=236 Identities=14% Similarity=0.089 Sum_probs=135.0
Q ss_pred EEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCC
Q 001403 412 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 491 (1084)
Q Consensus 412 v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~ 491 (1084)
|++.+..+-+... -+.+|...|..++|||.... ++..++.+.+|+|.|+++..++..+..+ ..+++++|.-++ .
T Consensus 175 v~~l~~~~fkssq---~lp~~g~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde-~ 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ---ILPGEGSFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDE-R 248 (463)
T ss_pred eEEeccCCcchhh---cccccchhhhhhccCccccc-eeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCC-c
Confidence 5555544433322 46678889999999999876 5778899999999999999999888877 789999997654 6
Q ss_pred cEEEEEecCCeEEEEECCCCCceE-eecC--CCCeEEEEEE------cCCCCEEEEEeeCCCCCeeEEEecCCCc--eEe
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARV-DYDA--PGLGCTRMAY------SANGRRLFSCGTSKEGESFLVEWNESEG--AIK 560 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~-~~~~--~~~~i~~~~~------s~d~~~l~~~~~~~~~~~~i~~wd~~~~--~~~ 560 (1084)
++++.|...|.|.+||++..+... .+.. ...+|..++. .+.|.+++.... .+..|+..-. ...
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt------~l~f~ei~~s~~~~p 322 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT------VLQFYEIVFSAECLP 322 (463)
T ss_pred ceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh------hhhhhhhhccccCCC
Confidence 899999999999999998765433 2221 2234444333 233444444432 1455554321 111
Q ss_pred eeeeccccccCceEEEEEcCCCCEEEEEECC-------CcEEE-EECCCCeEEEEEcCCC-CC-----CCcceEEEecCC
Q 001403 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-------HVIKI-WDMNKVQLLTTIDAGG-GL-----PENPRICFNKNG 626 (1084)
Q Consensus 561 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------g~i~i-wd~~~~~~~~~~~~~~-~~-----~~v~~v~~s~~~ 626 (1084)
..++... .+...++...+..++++..... ..+-. -|-.+|..+....... +. ..-..+.-.++.
T Consensus 323 ~vlele~--pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n 400 (463)
T KOG1645|consen 323 CVLELEP--PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN 400 (463)
T ss_pred cccccCC--CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence 1111111 1344555555554555544322 00111 1222333332221100 00 001122223444
Q ss_pred CEEEE-EECCCeEEEEEcCCCCeeeeccccccceeEE
Q 001403 627 TLLAV-IANENRIKILETPESNSVDAAGVLSDNLRKL 662 (1084)
Q Consensus 627 ~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 662 (1084)
++++. +.+.+.+.+||..+...++.+... .++..+
T Consensus 401 n~iv~~gd~tn~lil~D~~s~evvQ~l~~~-epv~Di 436 (463)
T KOG1645|consen 401 NYIVVVGDSTNELILQDPHSFEVVQTLALS-EPVLDI 436 (463)
T ss_pred cEEEEecCCcceeEEeccchhheeeecccC-cceeec
Confidence 55544 445688999999998888776543 444433
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.002 Score=74.71 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=67.3
Q ss_pred cEEEEEecCCeEEEEECCCCCceEeecCCCC------eEE--EEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeee
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARVDYDAPGL------GCT--RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 563 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------~i~--~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 563 (1084)
..++.++.++.+.-.|..+++.+........ .+. .+++. ++..++.++. ++.|+-+|.++|+.+-.+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence 3567777788888888888777665543322 000 11111 2245555543 667999999999998777
Q ss_pred eccccc--cCceE-EEEEcCCCCEEEEEE---------CCCcEEEEECCCCeEEEEEcC
Q 001403 564 QGLQLQ--HNSVS-VVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDA 610 (1084)
Q Consensus 564 ~~~~~~--~~~v~-~~~~s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~ 610 (1084)
...... ...+. ...+. +..++.++ .+|.++.+|..+|+.+.....
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 643300 00011 11222 24555554 368899999999999887765
|
The alignment model contains an 8-bladed beta-propeller. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0018 Score=75.19 Aligned_cols=254 Identities=11% Similarity=0.116 Sum_probs=146.2
Q ss_pred CCEEEEEeCCeEEEEEcCCceeEEEEcCCCCC-----e-EEEEEcCCCCcEEEEEe---------CCCeEEEEEcCCcee
Q 001403 806 DAYLFSASGGVISLYIVMTFKTILTIMPPSPT-----A-TSLAFNPHDNNVIAIGM---------DDSTILIYNARSSEV 870 (1084)
Q Consensus 806 g~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~-----i-~~l~~s~~d~~~la~g~---------~dg~i~iwd~~~~~~ 870 (1084)
++.++...++.|..+|.++|+.+..+...... + .+..+. ++ +++.++ .+|.+..+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCce
Confidence 44444444899999999999999887644321 1 122232 23 455554 367899999999998
Q ss_pred eeeeccccc--------------------CE-EEEEEcCCCCEEEEEeCCC------------------cEEEEeCCCCc
Q 001403 871 ISKLEGHSK--------------------RV-TGLVFSDALNILVSSGGDA------------------QIFVWDVDGWG 911 (1084)
Q Consensus 871 ~~~l~~h~~--------------------~V-~~l~~spd~~~l~s~s~dg------------------~I~iwd~~~~~ 911 (1084)
+..+..... .| ...++.+.+.+++.++.++ .|.-.|.++|+
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 877653211 01 1234445566777776665 68999999988
Q ss_pred eeeeeeeecCCCC--ccCC-CCceEEEEccCCC---EEEE-EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCE
Q 001403 912 IQTCRSLQTPDGV--MTLA-PSETHIQFHKDQT---RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM 984 (1084)
Q Consensus 912 ~~~~~~~~~~~~~--~~~~-~~v~~~~~s~dg~---~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~ 984 (1084)
..-.......... .... ..+..+. .-+|. .+++ +.+|.+...|..+|+.+...... ...++.+| ..
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~ 340 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GL 340 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ce
Confidence 5543222111100 0000 0011111 12343 3444 46899999999999988764321 11233444 23
Q ss_pred EEEE------------------eCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCc
Q 001403 985 VFTS------------------FVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGE 1046 (1084)
Q Consensus 985 l~t~------------------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~ 1046 (1084)
++.+ ..+|.+.-.|+.+|+.+.+...........-+.......++.. +..|.+++.||.
T Consensus 341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~---g~~v~~g~~dG~ 417 (488)
T cd00216 341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATA---GNLVFAGAADGY 417 (488)
T ss_pred EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEec---CCeEEEECCCCe
Confidence 3332 2467888899999998876653211000000001111112222 578999999999
Q ss_pred EEEEcCCCCCCCcccCCCCCcccCCC
Q 001403 1047 VYVIEPNEPGDTWAVLPPDEIVGDQP 1072 (1084)
Q Consensus 1047 v~vw~~~~~~~~~~~~~~~~~~~~~~ 1072 (1084)
|+.+|...-+..|...-+....+.|.
T Consensus 418 l~ald~~tG~~lW~~~~~~~~~a~P~ 443 (488)
T cd00216 418 FRAFDATTGKELWKFRTPSGIQATPM 443 (488)
T ss_pred EEEEECCCCceeeEEECCCCceEcCE
Confidence 99999988888898866655555554
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.1e-05 Score=85.15 Aligned_cols=186 Identities=14% Similarity=0.117 Sum_probs=141.2
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEE
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 528 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 528 (1084)
.++.|+....+..+|+.+++..+...-..+.|.-|+. ++.++.+|...|+|.+-|..+.+...++..|.+.+..
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD-- 222 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD-- 222 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceee--
Confidence 5777888888889999999887776655555777754 5679999999999999999999999999999988865
Q ss_pred EcCCCCEEEEEeeCCC-----CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCC-CCEEEEEECCCcEEEEECCC-
Q 001403 529 YSANGRRLFSCGTSKE-----GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNK- 601 (1084)
Q Consensus 529 ~s~d~~~l~~~~~~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~- 601 (1084)
|+-.|+.|++||.+.. .|..|.+||+++-+.+..+.-+. ++ .-+.|.|. ...+++++..|...+-|..+
T Consensus 223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---GP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc---Cc-hhhhhcccccceEEEEecccceeecccccc
Confidence 4567899999987543 35678999999887776665554 22 45667776 45778888999999988332
Q ss_pred CeE-EEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 602 VQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 602 ~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
+++ ......+...+.+..+.++++|..++.|..+|.|.+|.-.
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 111 1222222223348899999999999999999999999843
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00034 Score=79.01 Aligned_cols=185 Identities=13% Similarity=0.148 Sum_probs=124.0
Q ss_pred EEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCE
Q 001403 729 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 808 (1084)
Q Consensus 729 i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 808 (1084)
+.+.+++ ++.++.|+.+|.+++++.+.... .. + .|... ..+|.+
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~~------------------------~~-~---~~s~~------~~~Gey 85 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNPK------------------------TN-F---DHSSS------ILEGEY 85 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCCccc------------------------cc-c---ccccc------ccCCce
Confidence 4444443 56688888899999887543210 00 0 02111 558999
Q ss_pred EEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCC----CCcEEEEEeCCCeEEEEEcCC-c-eeeeeecccccCE
Q 001403 809 LFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH----DNNVIAIGMDDSTILIYNARS-S-EVISKLEGHSKRV 881 (1084)
Q Consensus 809 l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~----d~~~la~g~~dg~i~iwd~~~-~-~~~~~l~~h~~~V 881 (1084)
+++++ ||+|.|..+.+.+...++. ...++.+++++|+ ..+.+++|+.-| +.++.-.- | +.-..+..-.++|
T Consensus 86 ~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I 163 (846)
T KOG2066|consen 86 VASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPI 163 (846)
T ss_pred EEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccce
Confidence 99999 7999999999888877666 4568999999993 256788899888 77765321 1 1111344556899
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcC
Q 001403 882 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 957 (1084)
Q Consensus 882 ~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~ 957 (1084)
.++.|. |.++|-++.+| |+|||+.++...+ .++..............+.|.++.+ |+.|-..+|+|..++
T Consensus 164 ~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~--~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 164 HSIKWR--GNLIAWANDDG-VKVYDTPTRQRLT--NIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred EEEEec--CcEEEEecCCC-cEEEeccccceee--ccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 999995 88999998888 9999999866433 2222222221112345677776655 666777788888877
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00023 Score=80.41 Aligned_cols=188 Identities=12% Similarity=0.110 Sum_probs=130.2
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 001403 836 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 915 (1084)
Q Consensus 836 ~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~ 915 (1084)
..++|++++ +++++.|+.+|.|++++.. +.. .+...|+.. ..+|.+++||+.||+|.|-.+.+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 456777775 4799999999999999976 444 444446554 56899999999999999999988664332
Q ss_pred eeeecCCCCccCCCCceEEEEccC-----CCEEEEEeCCeEEEEEcCC-cceeeEeecCCCCCEEEEEEccCCCEEEEEe
Q 001403 916 RSLQTPDGVMTLAPSETHIQFHKD-----QTRFLLVHETHLAIYEAEE-LTCLKQWFPISSVPISQATFSCDCRMVFTSF 989 (1084)
Q Consensus 916 ~~~~~~~~~~~~~~~v~~~~~s~d-----g~~la~~~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 989 (1084)
.-++. ++.+++++|| .+.+++|+...+.++.-.= |...........++|.++.|- |.++|=++
T Consensus 109 ~df~r---------piksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan 177 (846)
T KOG2066|consen 109 YDFKR---------PIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN 177 (846)
T ss_pred EecCC---------cceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec
Confidence 22222 5889999998 5667775443377765331 111122233347899999986 66888887
Q ss_pred CCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCC
Q 001403 990 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1053 (1084)
Q Consensus 990 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~ 1053 (1084)
.+| |+|||+.+++.+..+.+....+. ...++..+.|.+ ...|+.| ..-+|+|..+.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~R----~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSVR----PELFPPHLHWQD--EDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCCC----cccCCCceEecC--CCeEEEe-cCCeEEEEEEe
Confidence 665 99999999999988875542222 234555678886 3455554 56688888887
|
|
| >smart00668 CTLH C-terminal to LisH motif | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.4e-06 Score=65.09 Aligned_cols=53 Identities=34% Similarity=0.595 Sum_probs=42.8
Q ss_pred hHHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHHHhhhcCCCH
Q 001403 37 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDI 90 (1084)
Q Consensus 37 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~Ell~~~~~ 90 (1084)
++..++++|+.|+|+.|++.+.........+.+ .+.|.|++|+|+||++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 478899999999999999999887443322223 49999999999999998764
|
Alpha-helical motif of unknown function. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.004 Score=71.29 Aligned_cols=256 Identities=15% Similarity=0.115 Sum_probs=141.0
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC------
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK------ 409 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d------ 409 (1084)
.+...++||||++||.+.... |.-. .+++|.|+.++...... +.. ..-..+.|.+||+.|+....+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~--G~e~--~~l~v~Dl~tg~~l~d~--i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDG--GSEW--YTLRVFDLETGKFLPDG--IEN--PKFSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEET--TSSE--EEEEEEETTTTEEEEEE--EEE--EESEEEEECTTSSEEEEEECSTTTSS-
T ss_pred EeeeeeECCCCCEEEEEecCC--CCce--EEEEEEECCCCcCcCCc--ccc--cccceEEEeCCCCEEEEEEeCcccccc
Confidence 444688999999999965442 2221 68999999988554322 111 122349999999988776432
Q ss_pred -----CEEEEEEccCCccccceeeeeccccc--EeEEEeecCCCcEEEEEEeC-C-CcEEEEECCCC----ceeeEeccC
Q 001403 410 -----HIVQLYAYHGGSDARQQLEIDAHVGN--VNDLAFSAPCKQISVITCGD-D-KTIKVWDAVTG----SRTYSFEGH 476 (1084)
Q Consensus 410 -----g~v~iwd~~~~~~~~~~~~l~~h~~~--V~~l~~s~d~~~l~l~s~~~-d-~~i~vwd~~~g----~~~~~~~~h 476 (1084)
..|..|.+.++..-. ...+...... ...+..++|++.+++.+.+. + ..+.+-|+..+ .....+..+
T Consensus 197 ~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~ 275 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR 275 (414)
T ss_dssp CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES
T ss_pred cCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC
Confidence 237888887764321 1133343332 56788999999633333332 2 35788888775 233444333
Q ss_pred CCcE-EEEeecccCCCcEEEEEe---cCCeEEEEECCCCCc---eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeE
Q 001403 477 GAPV-YSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 549 (1084)
Q Consensus 477 ~~~v-~~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 549 (1084)
...+ ..+... ++.+++... ..+.|...++..... ...+..+...+.-..+...+.+|+.... .++...|
T Consensus 276 ~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~-~~~~~~l 351 (414)
T PF02897_consen 276 EDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR-ENGSSRL 351 (414)
T ss_dssp SSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEE-ETTEEEE
T ss_pred CCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEE-ECCccEE
Confidence 3333 333332 223333332 235677777776653 2234444433333333345666666554 3457789
Q ss_pred EEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEE--E--CCCcEEEEECCCCeEEE
Q 001403 550 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA--G--DDHVIKIWDMNKVQLLT 606 (1084)
Q Consensus 550 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~--~dg~i~iwd~~~~~~~~ 606 (1084)
.++++..+.......... .+.|..+...++++.+... + .-++++.||+.+++...
T Consensus 352 ~v~~~~~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 352 RVYDLDDGKESREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEETT-TEEEEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEECCCCcEEeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 999998444444444433 2456666666666655442 2 34678888998887543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0021 Score=71.12 Aligned_cols=287 Identities=12% Similarity=0.129 Sum_probs=144.1
Q ss_pred eEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC-CC
Q 001403 728 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-ND 806 (1084)
Q Consensus 728 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-dg 806 (1084)
.|..+.|.++..-++++...|.+.+|.+..++......... -.|... ..+.... ++
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~-----~~~~~~------------------~~~~~~~~~~ 59 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPP-----DLDYNF------------------RRFSLNNSPG 59 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------------------------S--GGGSS-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCc-----ccCccc------------------ccccccCCCc
Confidence 57889999999999999999999999987654321000000 000000 0000000 11
Q ss_pred CEEEEEe--CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee--ecc------
Q 001403 807 AYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEG------ 876 (1084)
Q Consensus 807 ~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~--l~~------ 876 (1084)
..+-... +..++ +...+...+....+.|++++.|. =-++|+|.++|.+.|.|++....+.. +..
T Consensus 60 ~l~di~~r~~~~~~----~gf~P~~l~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~ 133 (395)
T PF08596_consen 60 KLTDISDRAPPSLK----EGFLPLTLLDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKS 133 (395)
T ss_dssp SEEE-GGG--TT-S----EEEEEEEEE---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS
T ss_pred ceEEehhhCCcccc----cccCchhheeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccccccccc
Confidence 1111100 00000 01122333444578999999985 44999999999999999987766544 222
Q ss_pred cccCEEEEEEcC-----CC---CEEEEEeCCCcEEEEeCCC-C-ceeeeeeeecCCCCccCCCCceEEE-EccC------
Q 001403 877 HSKRVTGLVFSD-----AL---NILVSSGGDAQIFVWDVDG-W-GIQTCRSLQTPDGVMTLAPSETHIQ-FHKD------ 939 (1084)
Q Consensus 877 h~~~V~~l~~sp-----d~---~~l~s~s~dg~I~iwd~~~-~-~~~~~~~~~~~~~~~~~~~~v~~~~-~s~d------ 939 (1084)
....|+++.|+. |+ -.|+.|...|.+.+|.+.- . ..-..........+. +.+..+. |+.+
T Consensus 134 ~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~---~~i~~I~~i~~~~G~~a~ 210 (395)
T PF08596_consen 134 SSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHD---SPILSIIPINADTGESAL 210 (395)
T ss_dssp ----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-------EEEEEETTT--B-B
T ss_pred cccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCC---CceEEEEEEECCCCCccc
Confidence 345788898882 33 5788899999999998862 1 111111111111111 1333333 3222
Q ss_pred ---------------CCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEc-----cCCCEEEEEeCCCcEEEEEc
Q 001403 940 ---------------QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-----CDCRMVFTSFVDGTLSIHEA 999 (1084)
Q Consensus 940 ---------------g~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs-----~dg~~l~t~~~dg~i~vwd~ 999 (1084)
..+++++++..++++...+.+..+... ........+++- ..+..|++-..+|.|+++.+
T Consensus 211 At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 211 ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp -BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred CchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 135666789999999999888777655 222344445553 35677888999999999999
Q ss_pred CCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCC
Q 001403 1000 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1055 (1084)
Q Consensus 1000 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~ 1055 (1084)
...+.+.+....... ....+. ..++++ +|..++-. ....+.++.+...
T Consensus 290 P~Lkei~~~~l~~~~----d~~~~~--~ssis~-~Gdi~~~~-gpsE~~l~sv~~~ 337 (395)
T PF08596_consen 290 PSLKEIKSVSLPPPL----DSRRLS--SSSISR-NGDIFYWT-GPSEIQLFSVWGE 337 (395)
T ss_dssp TT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE--SSSEEEEEEEES-
T ss_pred CCchHhhcccCCCcc----cccccc--ccEECC-CCCEEEEe-CcccEEEEEEEcc
Confidence 999998877632110 111122 234565 46655554 3445555544333
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0085 Score=64.17 Aligned_cols=229 Identities=12% Similarity=0.036 Sum_probs=111.6
Q ss_pred EEEcCCCCEEEEEeC---CCEEEEEEccCCccccceeeeeccc-ccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001403 394 VVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 469 (1084)
Q Consensus 394 v~fspdg~~las~~~---dg~v~iwd~~~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~ 469 (1084)
=+|.+||+.|+.++. ...+.+.|+.+++..+ |.... .......++++++ .++-......++--|+++++.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--E
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcE
Confidence 468899988887765 4467888888886443 33332 2233466788888 444344456888889999877
Q ss_pred eeEeccCCCcEEEEeecccCCCcEEEEEec----------------------CCeEEEEECCCCCceEeecCCCCeEEEE
Q 001403 470 TYSFEGHGAPVYSLCPHAKENIHFIFSISV----------------------DGKIKAWLYDSLGARVDYDAPGLGCTRM 527 (1084)
Q Consensus 470 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 527 (1084)
...+......+-...|..+.|+..++..-. ...|..-|+.+++....+. ....+.-+
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~ 193 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHV 193 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEE
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCc
Confidence 655555666666666665666666544321 1133444566554443333 44567788
Q ss_pred EEcCCCCEEEEEeeCCCCC---eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE-----CCCcEEEEEC
Q 001403 528 AYSANGRRLFSCGTSKEGE---SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----DDHVIKIWDM 599 (1084)
Q Consensus 528 ~~s~d~~~l~~~~~~~~~~---~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~iwd~ 599 (1084)
.|+|....++.-+..+.-+ .+|.+.+.. |.....+..+. ....+..=-|.|||..+.--+ .+..|.-+|.
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence 8999655444433333222 234444433 33333333222 124455667999998876632 3456777888
Q ss_pred CCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC
Q 001403 600 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 635 (1084)
Q Consensus 600 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 635 (1084)
.+++........ .....-.++||++++-=+.|
T Consensus 272 ~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 272 DTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 888665433321 23455567888877654444
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0015 Score=76.18 Aligned_cols=216 Identities=14% Similarity=0.115 Sum_probs=118.0
Q ss_pred CCeEEEEEcCCCCcEEEEEe------CCC--eEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCC-CcEEEEe
Q 001403 836 PTATSLAFNPHDNNVIAIGM------DDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWD 906 (1084)
Q Consensus 836 ~~i~~l~~s~~d~~~la~g~------~dg--~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~d-g~I~iwd 906 (1084)
..+.+.++|| +++.+|... .|+ .|.+++.. +.......+. ..+.-.|+|||+.|++.+.. ..+++.+
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678999999 777766554 243 55555642 3332223332 37889999999988887543 2233332
Q ss_pred CCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEE---EEcCCcce-e---eEeecCCCCCEEEEEEc
Q 001403 907 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI---YEAEELTC-L---KQWFPISSVPISQATFS 979 (1084)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~v---wd~~~~~~-~---~~~~~~h~~~v~~l~fs 979 (1084)
-..........+..........+.|..+.|||||+.+|...+++|++ -....|+. + ..+..+-...+.++.|.
T Consensus 426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 426 DPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred cCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence 21110000000000000001123699999999999999976788887 55455641 1 11222223446889999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCCCc
Q 001403 980 CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1059 (1084)
Q Consensus 980 ~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~~~ 1059 (1084)
.++.++ ++..++...+|.+.-.-..........+... + .+++-.| ..+.+++.+|-+.+=.-...+..|
T Consensus 506 ~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~-----v--~~vaa~~---~~iyv~~~~g~~~l~~~~~~~~~W 574 (591)
T PRK13616 506 TGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAP-----V--VAVAASP---STVYVTDARAVLQLPNSDSGDQYW 574 (591)
T ss_pred cCCEEE-EEecCCCCceEEEecCCccccccCCCCccCc-----e--EEEecCC---ceEEEEcCCceEEecCCCCCCCCc
Confidence 999855 5556665666665433222111111111111 2 3466555 356677777744443333445679
Q ss_pred ccCCCCC
Q 001403 1060 AVLPPDE 1066 (1084)
Q Consensus 1060 ~~~~~~~ 1066 (1084)
...|+..
T Consensus 575 ~ev~~l~ 581 (591)
T PRK13616 575 REVPGLM 581 (591)
T ss_pred eECcccc
Confidence 8888775
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.031 Score=65.17 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=43.4
Q ss_pred CeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccc
Q 001403 815 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH 877 (1084)
Q Consensus 815 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h 877 (1084)
|.+.-+|+.+|+..-............... .+.+++.++.+|.++.+|.++|+.+...+-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 568889999998887765433222222222 3447777888999999999999999877643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0017 Score=74.24 Aligned_cols=202 Identities=11% Similarity=0.114 Sum_probs=135.1
Q ss_pred EEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCC-eEEEEEcCCCCcEEEEEeCCC-----eEEEEEcCCc----
Q 001403 800 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDS-----TILIYNARSS---- 868 (1084)
Q Consensus 800 l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~la~g~~dg-----~i~iwd~~~~---- 868 (1084)
-++++.+..++.|+ +|.|.+.+- +.+.++.++.+... ++.+-... +..+|++.+.|+ .|+||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 35778888888887 788777763 34455677776666 44444433 446888777665 5999998642
Q ss_pred --eee--eeecc-----cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccC
Q 001403 869 --EVI--SKLEG-----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 939 (1084)
Q Consensus 869 --~~~--~~l~~-----h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 939 (1084)
+++ ..+.. ...++.+++.|.+-+.+|.|-.+|.|..+.-+--..+..+..-...+. .+|+.+++..|
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence 223 12222 345789999999999999999999999886543222222222222332 37999999999
Q ss_pred CCE-EEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEe
Q 001403 940 QTR-FLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1008 (1084)
Q Consensus 940 g~~-la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~ 1008 (1084)
++. +.++.-..|.+|.+............|...+.|..|++....+++++ +..+.+|+.+.......+
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 988 55567788999999843323444566788888888887554355554 457999999865554333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0029 Score=70.95 Aligned_cols=220 Identities=10% Similarity=0.066 Sum_probs=114.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
.......+.++|+|+++++ +.+|.-.|+..... +. ...+.-...+|.+.++ +|+-...++|.|+.--+
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYKNFK 98 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEETTE
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEEcCc
Confidence 4456788999999999999 45666777773322 21 2234456788999665 56666688899964223
Q ss_pred CceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001403 467 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 546 (1084)
Q Consensus 467 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 546 (1084)
......+... ..+..+-. |.+|...+. +.|.+||+.+.+....+... +|..+.|+++|++++..+.
T Consensus 99 ~~~~k~i~~~-~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~----- 164 (443)
T PF04053_consen 99 NEVVKSIKLP-FSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK----- 164 (443)
T ss_dssp E-TT-----S-S-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-----
T ss_pred cccceEEcCC-cccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC-----
Confidence 3332233221 12333321 455555544 48999999998888877654 4889999999999999873
Q ss_pred eeEEEecCCCc-----------eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeE--EEEEcCCCC
Q 001403 547 SFLVEWNESEG-----------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGG 613 (1084)
Q Consensus 547 ~~i~~wd~~~~-----------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~ 613 (1084)
..+++++.+.. .....+.... ..|.+.+|..+ .++-.+.. .++. +-.|+. +..+. .
T Consensus 165 ~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld--~- 233 (443)
T PF04053_consen 165 DSIYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD--K- 233 (443)
T ss_dssp -SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S--S-
T ss_pred CeEEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC--C-
Confidence 33666654332 0122222112 46778888765 44444443 6665 333433 33332 1
Q ss_pred CCCcceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 614 LPENPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 614 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
.+.-+.+.+..+.+.....++.+..+.+..
T Consensus 234 --~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 234 --PLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ----EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred --ceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 356677777777888888888888887663
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0052 Score=68.02 Aligned_cols=114 Identities=16% Similarity=0.120 Sum_probs=81.1
Q ss_pred ceEEEEccC-CCEEEEE-----eCC----eEEEEEcCCcce--eeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 001403 931 ETHIQFHKD-QTRFLLV-----HET----HLAIYEAEELTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 998 (1084)
Q Consensus 931 v~~~~~s~d-g~~la~~-----~d~----~i~vwd~~~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd 998 (1084)
..++.||-. ...+.+. .+| .-.+|++..++. +..........|.+.+++|+...|+.|+.||+|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 467788763 3333331 233 255677765443 3333334588999999999999999999999999999
Q ss_pred cCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCC
Q 001403 999 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1057 (1084)
Q Consensus 999 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~ 1057 (1084)
...+.-... ...+.|..++||| +|..+++|+.-|.+.+||+.-+..
T Consensus 288 ~~~~~t~~~------------ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 288 TTRGVTLLA------------KAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred cCCCeeeee------------eecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCcc
Confidence 988743311 1124566799999 589999999999999999865543
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00058 Score=75.27 Aligned_cols=125 Identities=10% Similarity=0.085 Sum_probs=84.6
Q ss_pred CCceEEEEcCCCceeeeeccc--ccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEE
Q 001403 335 SSPMSMDFHPVQHTLLLGLWD--VNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 412 (1084)
Q Consensus 335 ~~V~~v~~spdg~~las~~~d--~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v 412 (1084)
....++.||-...+-+-..-- ...|+.. -.-.+|++...+.......--.....|.|++++|+.+.|+.|+.||+|
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~--~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPS--ADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSI 283 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCce--eEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeE
Confidence 366788888744333321111 0112211 234567776543222211222467899999999999999999999999
Q ss_pred EEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 413 QLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 413 ~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
++||...+.. .+....-..+.++|+|+|. ++++|+..|.+.+||+.-..
T Consensus 284 iLyD~~~~~t-----~~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 284 ILYDTTRGVT-----LLAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEcCCCee-----eeeeecccceEEEEcCCCc--EEEEEcCCceEEEEEeecCc
Confidence 9999987632 2224445678999999999 89999999999999987543
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0093 Score=67.11 Aligned_cols=200 Identities=16% Similarity=0.145 Sum_probs=111.5
Q ss_pred EEEecCCCCEEEEEeCC------------eEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 001403 799 CFALSKNDAYLFSASGG------------VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 866 (1084)
Q Consensus 799 ~l~~s~dg~~l~~~sdg------------~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~ 866 (1084)
.++.+|.|-.+|...+. .|++|+.. |+.+.++.-..+.|.++.|+. +. .|++...||.+++||+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCC
Confidence 35667777777766544 58888875 566666554448999999997 54 45567789999999986
Q ss_pred Ccee-------eeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCc--cCCCCceE-EEE
Q 001403 867 SSEV-------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM--TLAPSETH-IQF 936 (1084)
Q Consensus 867 ~~~~-------~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~-~~~ 936 (1084)
|+. +....-....+....+..+|-.+.+ .++.+.+-+--............+.... ........ ..+
T Consensus 110 -G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 110 -GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred -CceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEe
Confidence 333 1111112223333344445633333 3444433322221101000001111000 00001111 345
Q ss_pred ccCCCEEEE-EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 937 HKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 937 s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
+.+....+. ..++.+.+.+....+. . ...+++..+++||+|++||.-..+|.+.|...+-.+..+.+.
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 555554444 4555666444332211 1 124689999999999999999999999999877776666665
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0017 Score=72.62 Aligned_cols=199 Identities=12% Similarity=0.142 Sum_probs=117.7
Q ss_pred cceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCcccee
Q 001403 617 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 696 (1084)
Q Consensus 617 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 696 (1084)
+.--+++..+++++.|+.-|.+++|+-..+.....-.
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~------------------------------------------- 72 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN------------------------------------------- 72 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccc-------------------------------------------
Confidence 4455667788999999999999999877653321110
Q ss_pred cccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeec
Q 001403 697 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 776 (1084)
Q Consensus 697 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 776 (1084)
.+..+.+....++++..++++++..|.|.++.++.. ....
T Consensus 73 --------------------------~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~-~p~~------------- 112 (726)
T KOG3621|consen 73 --------------------------EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE-LPRD------------- 112 (726)
T ss_pred --------------------------cCccceEEEEEecchhHhhhhhcCCceEEeehhhcc-CCCc-------------
Confidence 012234556677888888888888899988876542 1110
Q ss_pred CCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeC-CeEEEEEcCCc----eeEEEEcCCCCCeEEEEEcCCCCcEE
Q 001403 777 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTF----KTILTIMPPSPTATSLAFNPHDNNVI 851 (1084)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sd-g~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~~d~~~l 851 (1084)
......-...|...|++++|++|+..+.+|.+ |+|.+-.+.+. -..+.+....+.|..+.+.. +.+|
T Consensus 113 ------~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LL 184 (726)
T KOG3621|consen 113 ------LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLL 184 (726)
T ss_pred ------ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceeh
Confidence 11111111237889999999999999999984 99988888762 11233334557787887764 4444
Q ss_pred EEEeCCCeEEEEEcCCcee--eeeecccccCEEEEEEcCC----CCEEEEEeCCCcEEEEeCCC
Q 001403 852 AIGMDDSTILIYNARSSEV--ISKLEGHSKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 852 a~g~~dg~i~iwd~~~~~~--~~~l~~h~~~V~~l~~spd----~~~l~s~s~dg~I~iwd~~~ 909 (1084)
++.. - .-.+++.+.+.. +..-.-..-.-...+|-|. .+-.+.++.-| .|+|..+-
T Consensus 185 VStl-~-r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~ 245 (726)
T KOG3621|consen 185 VSTL-T-RCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADF 245 (726)
T ss_pred Hhhh-h-hhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeec
Confidence 4332 2 233445443321 1111101111233455553 34455566666 68887663
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0049 Score=69.17 Aligned_cols=219 Identities=16% Similarity=0.176 Sum_probs=120.9
Q ss_pred CCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee
Q 001403 794 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 873 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~ 873 (1084)
...+..+.++|+|++++++++|...++.....+.... +.....+|++ .++ +|+-...++|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 3457899999999999999999999999655444332 3345788998 565 66666688999973333333233
Q ss_pred ecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEE
Q 001403 874 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI 953 (1084)
Q Consensus 874 l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~v 953 (1084)
+.-. ..+..+-. |.+|...+.+ .|.+||+++++ .+....-. .|..+.||++|.++|...+..+.|
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~-----~i~~i~v~-----~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGK-----LIRRIDVS-----AVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT-------EEEEESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcc-----eeeEEecC-----CCcEEEEECCCCEEEEEeCCeEEE
Confidence 3311 12333333 8888877665 79999999965 33333221 378999999999999988889999
Q ss_pred EEcCCc-----------ceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce--eEEeccccccCCCCcc
Q 001403 954 YEAEEL-----------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV--QCRILSTAYLRPTTSC 1020 (1084)
Q Consensus 954 wd~~~~-----------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~ 1020 (1084)
++.... ..+.... .-...|.+.+|-.| -++.|. .. .++- +..|+. ++.+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~-E~~~~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge~~~i~~ld----------- 232 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIH-EISERIKSGCWVED-CFIYTT-SN-HLKY--LVNGETGIIAHLD----------- 232 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEE-EE-S--SEEEEETT-EEEEE--TT-EEEE--EETTEEEEEEE-S-----------
T ss_pred EEecchhcccccccCchhceEEEE-EecceeEEEEEEcC-EEEEEc-CC-eEEE--EEcCCcceEEEcC-----------
Confidence 886533 0222211 11568889999887 455554 33 6775 555543 33333
Q ss_pred cceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 1021 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 1021 ~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
..++. +.+.|+ .+.+.....|+.|..+.+.-
T Consensus 233 ~~~yl--lgy~~~-~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 KPLYL--LGYLPK-ENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp S--EE--EEEETT-TTEEEEE-TT--EEEEE--H
T ss_pred CceEE--EEEEcc-CCEEEEEECCCCEEEEEECH
Confidence 12343 344553 47888899999999887743
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.1e-05 Score=47.77 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhhcChHHHHHHHHHhc
Q 001403 6 KDLVFLILQFLNEEGFTESAHMLERES 32 (1084)
Q Consensus 6 ~~~~rli~q~L~~~g~~~s~~~l~~Es 32 (1084)
+++.+||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 578999999999999999999999997
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.80 E-value=3e-05 Score=52.05 Aligned_cols=32 Identities=34% Similarity=0.552 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhhhhcChHHHHHHHHHhcCCC
Q 001403 4 LNKDLVFLILQFLNEEGFTESAHMLERESRFY 35 (1084)
Q Consensus 4 ~~~~~~rli~q~L~~~g~~~s~~~l~~Es~~~ 35 (1084)
.++++.++|+|||...||.+|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.09 Score=61.33 Aligned_cols=149 Identities=9% Similarity=0.089 Sum_probs=89.7
Q ss_pred eEEEEEcCCceeeeeecccccCE---------EEEEEcCCCC---EEEEEeCCCcEEEEeCCCCceeeee------ee-e
Q 001403 859 TILIYNARSSEVISKLEGHSKRV---------TGLVFSDALN---ILVSSGGDAQIFVWDVDGWGIQTCR------SL-Q 919 (1084)
Q Consensus 859 ~i~iwd~~~~~~~~~l~~h~~~V---------~~l~~spd~~---~l~s~s~dg~I~iwd~~~~~~~~~~------~~-~ 919 (1084)
+|.-.|++||+....++.....+ .-+.+..+|+ .++.+..+|.+.+.|-.+|+..... .. +
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 67777999999887776422111 1222334676 7889999999999999998863210 00 0
Q ss_pred cCC---CCc---------------------cCCCC--ceEEEEccCCCEEEE-EeC------------------------
Q 001403 920 TPD---GVM---------------------TLAPS--ETHIQFHKDQTRFLL-VHE------------------------ 948 (1084)
Q Consensus 920 ~~~---~~~---------------------~~~~~--v~~~~~s~dg~~la~-~~d------------------------ 948 (1084)
... +.. ...+. =..++++|+..++.+ ..+
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 000 000 00000 023667776666654 111
Q ss_pred ---------CeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 949 ---------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 949 ---------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
+.|.-+|+.+|+...+...... ...+. ....|.+++.++.||.++.+|.++|+.+.++.
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p-~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDFP-LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCCC-CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 3577788888888776443211 11121 22345577778889999999999999998776
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0078 Score=66.64 Aligned_cols=241 Identities=13% Similarity=0.090 Sum_probs=135.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccc----------------------------------------cceeee
Q 001403 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA----------------------------------------RQQLEI 429 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~----------------------------------------~~~~~l 429 (1084)
.|+.+.|+++..-||+|...|.|.||.+...+.. .+..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 6889999999999999999999999876533211 111223
Q ss_pred ecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe--cc------CCCcEEEEeec---ccCCC---cEEE
Q 001403 430 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EG------HGAPVYSLCPH---AKENI---HFIF 495 (1084)
Q Consensus 430 ~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~--~~------h~~~v~~~~~~---~~~~~---~~l~ 495 (1084)
....++|++++.|.-| +++.|..+|.+.|.|++....++.- .. ....|+++.|. ..+|+ -.++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3346789999998555 7999999999999999888877652 22 23456777664 23343 5788
Q ss_pred EEecCCeEEEEECCC-CCceE------eecCCCCeEEEEE-EcCC---------------------CCEEEEEeeCCCCC
Q 001403 496 SISVDGKIKAWLYDS-LGARV------DYDAPGLGCTRMA-YSAN---------------------GRRLFSCGTSKEGE 546 (1084)
Q Consensus 496 s~s~dg~i~iwd~~~-~~~~~------~~~~~~~~i~~~~-~s~d---------------------~~~l~~~~~~~~~~ 546 (1084)
.|...|.+.+|.+.- ....+ ....+..++..+. ++.+ ..++++++ +
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e 234 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E 234 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence 899999999997752 21111 1113334444443 3222 11344444 3
Q ss_pred eeEEEecCCCceEeeeeeccccccCceEEEEEc-----CCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCC--CCcce
Q 001403 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-----TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL--PENPR 619 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~ 619 (1084)
..++++...+.+..+...... .....+.+- ..+..|++-..+|.|+++.+..-+.+......... ..+..
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~---~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDP---FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred cceEEEeCCCCcccceeeccc---cccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence 448889888777655544221 122334442 34667888889999999999999888887764221 12456
Q ss_pred EEEecCCCEEEEEECCCeEEEEE
Q 001403 620 ICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 620 v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
.+++++|..++..+. ..+.++.
T Consensus 312 ssis~~Gdi~~~~gp-sE~~l~s 333 (395)
T PF08596_consen 312 SSISRNGDIFYWTGP-SEIQLFS 333 (395)
T ss_dssp -EE-TTS-EEEE-SS-SEEEEEE
T ss_pred cEECCCCCEEEEeCc-ccEEEEE
Confidence 778888886666544 3444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.012 Score=65.81 Aligned_cols=208 Identities=13% Similarity=0.152 Sum_probs=146.2
Q ss_pred CCccEEEecCCCCEEEEEe--CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeC---CCeEEEEEcCCce
Q 001403 795 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---DSTILIYNARSSE 869 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~---dg~i~iwd~~~~~ 869 (1084)
.....+++++++..+.... ++.|.+.|..+.+......... ....++++| +++.+.++.. ++++.+.|..+++
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCe
Confidence 3455788899988666655 5899999988777766655332 667899999 6655555544 6899999999988
Q ss_pred eeeeecccccCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE--
Q 001403 870 VISKLEGHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-- 946 (1084)
Q Consensus 870 ~~~~l~~h~~~V~~l~~spd~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-- 946 (1084)
.+.....-..+ ..++++|+|+.+... ..+++|.+.|........ .. .............+.++|+|.++.+.
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~---~~~~~~~~~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS---VGSLVGVGTGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc---cccccccCCCCceEEECCCCCEEEEEec
Confidence 88775433334 889999999965554 478999999977744221 11 00011111245689999999987774
Q ss_pred eC--CeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCC-CcEEEEEcCCCceeEEec
Q 001403 947 HE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-GTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 947 ~d--~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-g~i~vwd~~~~~~~~~~~ 1009 (1084)
.+ +.+...|..++.........-......+.++|+|+++.+.... +.+.+-|..+......+.
T Consensus 227 ~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 227 GSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred cCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 22 5899999988877665222111145678999999999888544 889999999988876655
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0085 Score=61.35 Aligned_cols=216 Identities=12% Similarity=0.111 Sum_probs=115.0
Q ss_pred EEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccc-ccCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001403 829 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVFSDALNILVSSGGDAQIFVWDV 907 (1084)
Q Consensus 829 ~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h-~~~V~~l~~spd~~~l~s~s~dg~I~iwd~ 907 (1084)
+.+.+-...+..++|.|+++.++++....+.|..++.. |+.+.++.-. .+..-.+++..++.++++.-.++.+.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 34555666799999999667788888889999999974 7877665432 356788999988888777667899999998
Q ss_pred CCCc--eeee--eeeecCCCCccCCCCceEEEEccCCCEEEEEeC-CeEEEEEcCC---cceeeEe-------ecCCCCC
Q 001403 908 DGWG--IQTC--RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE-THLAIYEAEE---LTCLKQW-------FPISSVP 972 (1084)
Q Consensus 908 ~~~~--~~~~--~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d-~~i~vwd~~~---~~~~~~~-------~~~h~~~ 972 (1084)
.... .... ..+..... ......+-.++|+|.+..|.++.+ .-..||.+.. ...+... .......
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~-~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFP-NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp ----TT--EEEEEEEE---S----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred eccccccchhhceEEecccc-cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 4422 1111 11111111 111135889999999877777644 3355555543 1111110 0112456
Q ss_pred EEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEE
Q 001403 973 ISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1050 (1084)
Q Consensus 973 v~~l~fs~d-g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw 1050 (1084)
+.++.|.|. |.+++....+..|.++| .+|+.+..+....-.. +....--.+=-|+|+| +|++.++ +.-+..+++
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~-gl~~~~~QpEGIa~d~-~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFH-GLSKDIPQPEGIAFDP-DGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGG-G-SS---SEEEEEE-T-T--EEEE-ETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCccc-CcccccCCccEEEECC-CCCEEEE-cCCceEEEe
Confidence 789999884 66777777888999999 6677766554222100 0001112345688998 4655544 455555444
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0035 Score=70.13 Aligned_cols=172 Identities=16% Similarity=0.182 Sum_probs=110.2
Q ss_pred EEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEe---CC-CeEEEEEcCCceeeee--ecccccCEEEEEEcCCC
Q 001403 817 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DD-STILIYNARSSEVISK--LEGHSKRVTGLVFSDAL 890 (1084)
Q Consensus 817 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~---~d-g~i~iwd~~~~~~~~~--l~~h~~~V~~l~~spd~ 890 (1084)
+.+-|.+ +.....+......+..-+|+| +++.++..+ .. ..++++++.+++.... +.++. ..-+|||||
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG 249 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDG 249 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCC
Confidence 4444444 555555655566777888999 676655442 22 3599999998765433 34443 457899999
Q ss_pred CEEEEE-eCCCc--EEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCC----eEEEEEcCCcceee
Q 001403 891 NILVSS-GGDAQ--IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAIYEAEELTCLK 963 (1084)
Q Consensus 891 ~~l~s~-s~dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~----~i~vwd~~~~~~~~ 963 (1084)
+.|+.+ ..||. |.+.|+.++.... +....+. -+.-.|+|||+.++-.+|. .|.+++.+.+....
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt~~~gi------~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r 320 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNLPR---LTNGFGI------NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR 320 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCccee---cccCCcc------ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence 988855 44554 6667777755211 2333332 3367899999999985442 48888888766544
Q ss_pred EeecCCCCCEEEEEEccCCCEEEEEeCC-Cc--EEEEEcCCCce
Q 001403 964 QWFPISSVPISQATFSCDCRMVFTSFVD-GT--LSIHEASNLEV 1004 (1084)
Q Consensus 964 ~~~~~h~~~v~~l~fs~dg~~l~t~~~d-g~--i~vwd~~~~~~ 1004 (1084)
....+ +.-....+||||++++..+.. |. |.+.++.++..
T Consensus 321 iT~~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 321 LTFSG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred eeccC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 33322 222277899999999987743 44 67777777664
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.03 Score=64.11 Aligned_cols=246 Identities=14% Similarity=0.129 Sum_probs=127.2
Q ss_pred CeEEEEEcCCCCEEEEE-eCCC----EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC---------
Q 001403 390 SVNRVVWSPDGSLLGVA-YSKH----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--------- 455 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~-~~dg----~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~--------- 455 (1084)
.+...++||||+++|.+ +..| .++++|+.+|+.+.. .+... ....++|.+|++. ++.+...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 44468899999999977 3333 599999999965432 11111 1223999999985 3344322
Q ss_pred -CCcEEEEECCCCcee--eEeccCCCc--EEEEeecccCCCcEEEEEecCC----eEEEEECCCC----CceEeecCCCC
Q 001403 456 -DKTIKVWDAVTGSRT--YSFEGHGAP--VYSLCPHAKENIHFIFSISVDG----KIKAWLYDSL----GARVDYDAPGL 522 (1084)
Q Consensus 456 -d~~i~vwd~~~g~~~--~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~dg----~i~iwd~~~~----~~~~~~~~~~~ 522 (1084)
...|+.|.+.++..- ..+...... ...+.. +.|+++++..+..+ .+.+.++... .....+.....
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~--s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSR--SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEe--cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 234888888776432 334443333 344555 56777776544332 3666677654 12223322222
Q ss_pred eE-EEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE---eeeeeccccccCceEEEEEcCCCCEEEEE-ECCC--cEE
Q 001403 523 GC-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDH--VIK 595 (1084)
Q Consensus 523 ~i-~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg--~i~ 595 (1084)
.+ ..+... +..++..+..+...+.|...++.+... ...+..+. ..+.-..+...+.+|+.. ..++ .|+
T Consensus 278 ~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~---~~~~l~~~~~~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 278 GVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED---EDVSLEDVSLFKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp S-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S---SSEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred ceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC---CceeEEEEEEECCEEEEEEEECCccEEE
Confidence 33 333332 444444444444567788888876652 22333333 322223333345556553 3333 578
Q ss_pred EEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEEC----CCeEEEEEcCCCCe
Q 001403 596 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESNS 648 (1084)
Q Consensus 596 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iwd~~~~~~ 648 (1084)
++++..+.....+..... ..|..+...+++..+..... -+++..||+.+++.
T Consensus 353 v~~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 353 VYDLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 899984555555544332 22444444455554433322 25788888887754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.12 Score=57.96 Aligned_cols=250 Identities=13% Similarity=0.121 Sum_probs=161.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCC-EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 390 SVNRVVWSPDGSLLGVAYSKH-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~~~dg-~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
....+...|+|..+....... .+.+-+.... .... ....-...-..++.++++.. ..++...++.|.+.|..+.+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n-~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSN-TVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccc-eeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 555688889886665553222 3444444411 1111 11111133457788888886 45555557899999988777
Q ss_pred eeeEeccCCCcEEEEeecccCCCcEEEEEec---CCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCC
Q 001403 469 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 545 (1084)
Q Consensus 469 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 545 (1084)
......--. ....+++.+ +++.++.+.. ++++.+.|-.+............+ ..++++|+|+.++.+.. .
T Consensus 108 ~~~~~~vG~-~P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~---~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNS---D 180 (381)
T ss_pred eeeEeeecc-CCceEEECC--CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEec---C
Confidence 776654222 445667744 5555655544 688888888877776664433334 89999999998888762 3
Q ss_pred CeeEEEecCCCceEeeeeecc--ccccCceEEEEEcCCCCEEEEEECC---CcEEEEECCCCeEEEEEcCCCCCCCcceE
Q 001403 546 ESFLVEWNESEGAIKRTYQGL--QLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRI 620 (1084)
Q Consensus 546 ~~~i~~wd~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v 620 (1084)
++.|.+.|..+....+ -... .........+.++|+++.+.+.... +.+.+.|..++.........+.. ....+
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence 7789999977766653 1100 1112345778999999977775433 69999999998877763222222 34678
Q ss_pred EEecCCCEEEEEECC-CeEEEEEcCCCCeeeec
Q 001403 621 CFNKNGTLLAVIANE-NRIKILETPESNSVDAA 652 (1084)
Q Consensus 621 ~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~ 652 (1084)
..+|+|+.+.+.... +.+.+.|..+.......
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~ 291 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTG 291 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCCceeeee
Confidence 999999998888554 88888888877555443
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.021 Score=58.46 Aligned_cols=201 Identities=11% Similarity=0.077 Sum_probs=110.9
Q ss_pred CCCCccEEEecCCCCEEEEEeC--CeEEEEEcCCceeEEEEcCC-CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce
Q 001403 793 SQEAVPCFALSKNDAYLFSASG--GVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 869 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~sd--g~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~ 869 (1084)
-...++.++|.|+...|++..| +.|..++. +|+.++.+.-. .+..-.+++.. ++.++++--.++.+.++++....
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEeccc
Confidence 4456999999998776666653 77877786 47888776543 35678899987 77777766668999999984321
Q ss_pred ------eeeeec-----ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC---CceeeeeeeecCCCCccCCCCceEEE
Q 001403 870 ------VISKLE-----GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQ 935 (1084)
Q Consensus 870 ------~~~~l~-----~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~ 935 (1084)
....+. .+...+-.++|.|.++.|+.+-...-..++.+.. .....................+..++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 111121 2445689999999988888887777777777764 11111011111110111112578999
Q ss_pred EccCCCEEEE-E-eCCeEEEEEcCCcceeeEeecC--C------CCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001403 936 FHKDQTRFLL-V-HETHLAIYEAEELTCLKQWFPI--S------SVPISQATFSCDCRMVFTSFVDGTLSIH 997 (1084)
Q Consensus 936 ~s~dg~~la~-~-~d~~i~vwd~~~~~~~~~~~~~--h------~~~v~~l~fs~dg~~l~t~~~dg~i~vw 997 (1084)
+.|....|.+ + ....|..+| .+|+.+..+.-. . -...-.|+|.++|++.++ ++-+..+++
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 9998655555 5 556788888 557765543221 1 135678999999976654 465555544
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0034 Score=73.43 Aligned_cols=187 Identities=10% Similarity=0.087 Sum_probs=106.7
Q ss_pred CCccEEEecCCCCEEEEEe-------CC--eEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCC--------
Q 001403 795 EAVPCFALSKNDAYLFSAS-------GG--VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-------- 857 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~s-------dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d-------- 857 (1084)
..+...++||||+.++... +. .+.+++.. +.. ..+.. ....+.-.|+| +|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 4678899999999988764 33 35555542 222 33322 22478889999 77766666432
Q ss_pred ----CeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEE---EeCCCCceeeeeeeecCCCCccCCCC
Q 001403 858 ----STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV---WDVDGWGIQTCRSLQTPDGVMTLAPS 930 (1084)
Q Consensus 858 ----g~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1084)
+.+.+.+++.++... ...+.|..+.|||||+++|... ++.|.+ -....|+...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 234444554443322 2346799999999999998776 477777 444444422211111111111 13
Q ss_pred ceEEEEccCCCEEEEEeCCeEEEEEcC-CcceeeEeecC--CCCCEEEEEEccCCCEEEEEeCCCcEE
Q 001403 931 ETHIQFHKDQTRFLLVHETHLAIYEAE-ELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLS 995 (1084)
Q Consensus 931 v~~~~~s~dg~~la~~~d~~i~vwd~~-~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~i~ 995 (1084)
+.++.|..++.+++...++...+|.+. .|..... ..+ ...++..|+-+++ .++.+..+|.+.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~-~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDA-LPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCccccc-cCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 578999999997655443433344433 1332222 122 2567777877763 455555666443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.033 Score=55.67 Aligned_cols=267 Identities=16% Similarity=0.149 Sum_probs=148.2
Q ss_pred ceEeeeeeccccccCceEEEEEcCCCCE-EEEEECCCc-EEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEEC
Q 001403 557 GAIKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 634 (1084)
Q Consensus 557 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 634 (1084)
|+++....... .-..++|+|.... ++.+-.-|+ ..++|..+.+...++......-..-.-+|||||.+|...-+
T Consensus 58 Gk~v~~~~lpa----R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEn 133 (366)
T COG3490 58 GKIVFATALPA----RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEN 133 (366)
T ss_pred Cceeeeeeccc----ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecC
Confidence 55554443322 3455778887543 444655555 56789988887777654433222334579999999987654
Q ss_pred C-----CeEEEEEcCCC-CeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccce
Q 001403 635 E-----NRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 635 d-----g~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
| |.|-|||...+ +.+..+..
T Consensus 134 dfd~~rGViGvYd~r~~fqrvgE~~t------------------------------------------------------ 159 (366)
T COG3490 134 DFDPNRGVIGVYDAREGFQRVGEFST------------------------------------------------------ 159 (366)
T ss_pred CCCCCCceEEEEecccccceeccccc------------------------------------------------------
Confidence 3 67888887643 11111110
Q ss_pred eecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEe-eccCCccCcCcccceecCCeeecCCCCCcccccc
Q 001403 709 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND 787 (1084)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1084)
|.-....+.+.+||+.++.+.. -|..- ++...+...+... -++.+.|..+|..+....
T Consensus 160 ----------------~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsMe---PSlvlld~atG~liekh~ 218 (366)
T COG3490 160 ----------------HGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSME---PSLVLLDAATGNLIEKHT 218 (366)
T ss_pred ----------------CCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhcC---ccEEEEeccccchhhhcc
Confidence 2222345667777776655432 23332 2222221111111 124456667777666666
Q ss_pred CcCCCCCCCccEEEecCCCCEEEEEe-CCe-----EEEEEcCCceeEEEEcCC-------CCCeEEEEEcCCCCcEEEEE
Q 001403 788 TTDSNSQEAVPCFALSKNDAYLFSAS-GGV-----ISLYIVMTFKTILTIMPP-------SPTATSLAFNPHDNNVIAIG 854 (1084)
Q Consensus 788 ~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~-----i~vwd~~~~~~~~~~~~~-------~~~i~~l~~s~~d~~~la~g 854 (1084)
++...+...+..++..+||..++.+. .|. --+=-...++.+.-+.-. ...|-+++.+.+++-..++.
T Consensus 219 Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTS 298 (366)
T COG3490 219 LPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTS 298 (366)
T ss_pred CchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEec
Confidence 66444677888999999998877664 111 111111234444333322 24577888887455555555
Q ss_pred eCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001403 855 MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906 (1084)
Q Consensus 855 ~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd 906 (1084)
-..+...+||..+|..+..-.- .....++- ...-++..+.+|.+.++.
T Consensus 299 P~GN~~vi~da~tG~vv~~a~l--~daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 299 PRGNRAVIWDAATGAVVSEAAL--PDAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CCCCeEEEEEcCCCcEEecccc--ccccccee--ccCceEEecCCceEEecc
Confidence 5666888999999987654321 11222322 333456666778888774
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.058 Score=60.76 Aligned_cols=187 Identities=12% Similarity=0.117 Sum_probs=101.4
Q ss_pred CCccEEEecCCCCEEEEEeCCeEEEEEcCCce------eEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 001403 795 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 868 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~------~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~ 868 (1084)
+.+.++.|+.+.++++...+|.++++|+.... .+....-....+.+..+.. +|-.+ -..++.+.+.+--..
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~-~Givv--Lt~~~~~~~v~n~~~ 157 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYK-NGIVV--LTGNNRFYVVNNIDE 157 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCC-CCEEE--ECCCCeEEEEeCccc
Confidence 78999999999999988899999999986322 1111111112222333433 45333 334555554432221
Q ss_pred e-eeeee---cc-------cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEc
Q 001403 869 E-VISKL---EG-------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 937 (1084)
Q Consensus 869 ~-~~~~l---~~-------h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 937 (1084)
. ....+ .+ +.....-..++.+....+....++.+.+-+-...+ .... .+.+..+++|
T Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~--------~i~~----~~~i~~iavS 225 (410)
T PF04841_consen 158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK--------QIDS----DGPIIKIAVS 225 (410)
T ss_pred cchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc--------cccC----CCCeEEEEEC
Confidence 1 11111 11 11100002344455555555555555544333210 0111 1368999999
Q ss_pred cCCCEEEE-EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 001403 938 KDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 998 (1084)
Q Consensus 938 ~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd 998 (1084)
|+|+++|. ..+|.+.+.+..-.+....+...-......+.|..++..++.- ...+.+..
T Consensus 226 png~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 226 PNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred CCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 99999999 6778999998776666666544434566777777665443332 23444444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.058 Score=57.76 Aligned_cols=235 Identities=10% Similarity=0.121 Sum_probs=133.1
Q ss_pred cCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCC
Q 001403 736 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG 815 (1084)
Q Consensus 736 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg 815 (1084)
..++.|+.|+.+| +.+++...... . ... .....|..+.+.++-..+++-+|+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~--------------------~-~~i------~~~~~I~ql~vl~~~~~llvLsd~ 56 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK--------------------P-TRI------LKLSSITQLSVLPELNLLLVLSDG 56 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc--------------------c-eeE------eecceEEEEEEecccCEEEEEcCC
Confidence 4567788888888 77777511100 0 000 133348999999998999998999
Q ss_pred eEEEEEcCCceeEEEE--------------cCCCCCeEEEE--EcCCCCcEEEEEeCCCeEEEEEcCCc-----eeeeee
Q 001403 816 VISLYIVMTFKTILTI--------------MPPSPTATSLA--FNPHDNNVIAIGMDDSTILIYNARSS-----EVISKL 874 (1084)
Q Consensus 816 ~i~vwd~~~~~~~~~~--------------~~~~~~i~~l~--~s~~d~~~la~g~~dg~i~iwd~~~~-----~~~~~l 874 (1084)
.+.++++......... ......+...+ -...+...|+++. ...|.+|..... +..+++
T Consensus 57 ~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~ 135 (275)
T PF00780_consen 57 QLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEI 135 (275)
T ss_pred ccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEE
Confidence 9999999765443311 11223344444 1122444555555 448888877653 344454
Q ss_pred cccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCC----CCccCCCCceEEEEccCCCEEEEEeCCe
Q 001403 875 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD----GVMTLAPSETHIQFHKDQTRFLLVHETH 950 (1084)
Q Consensus 875 ~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~dg~~la~~~d~~ 950 (1084)
. -.+.+.+++|. ++.++.|..++ ..+.|+.++............ .......++..+.. +++.+|++ .+..
T Consensus 136 ~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~ 209 (275)
T PF00780_consen 136 S-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNI 209 (275)
T ss_pred E-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecce
Confidence 4 34778999998 56677776555 889999976643321111111 00000012333333 34566654 3333
Q ss_pred EEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 951 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 951 i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
-.+.|. .|+..+.....-.....++++. ..||+..+. +.|.||++.+|+++..+.
T Consensus 210 g~fv~~-~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 210 GVFVNK-NGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred EEEEcC-CCCcCcccEEEcCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 333333 3443331011113455666664 448887655 569999999999987776
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.12 Score=55.38 Aligned_cols=231 Identities=11% Similarity=0.124 Sum_probs=130.5
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE-----
Q 001403 398 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS----- 472 (1084)
Q Consensus 398 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~----- 472 (1084)
..++.|+.|..+| +.+++......... . .+...|..+...++-+ .++.-+ |+.+.++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence 3578999999999 99999833322221 1 2333499999999877 444443 59999999875433321
Q ss_pred ---------eccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC-----CceEeecCCCCeEEEEEEcCCCCEEEE
Q 001403 473 ---------FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-----GARVDYDAPGLGCTRMAYSANGRRLFS 538 (1084)
Q Consensus 473 ---------~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~~i~~~~~s~d~~~l~~ 538 (1084)
-......+...+......+...+.......|.+|.+... ....++..+ ..+..++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEE
Confidence 011223344444112223344455555668888887663 233344333 467788887 566666
Q ss_pred EeeCCCCCeeEEEecCCCceEeeeeecccc---------ccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE--E
Q 001403 539 CGTSKEGESFLVEWNESEGAIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T 607 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~ 607 (1084)
+.. ....+.|+.++.....+..... ...++..+.. +++.+|++. |..-.+.|. .|+..+ .
T Consensus 154 ~~~-----~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GTS-----KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred EeC-----CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 652 2388889987766544422210 0123333333 334555543 222223333 444333 2
Q ss_pred EcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccc
Q 001403 608 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 654 (1084)
Q Consensus 608 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 654 (1084)
+.-.. ....+++. ..++++... +.|.||++.+++.++.+..
T Consensus 225 i~W~~---~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 225 IQWSS---APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEcCC---chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 22222 23455554 446766655 5699999999998887764
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.033 Score=59.34 Aligned_cols=233 Identities=14% Similarity=0.094 Sum_probs=128.4
Q ss_pred cccCccccCCCCCCCCcchhhhcccccCCCccCCC--ccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccc
Q 001403 288 TYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDF--PKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIR 365 (1084)
Q Consensus 288 ~~p~~~~~s~~~fsP~~s~~~~~f~~~~~~~~~~~--p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~ 365 (1084)
.......+..++|.|+.+.+ .|-......+..+ .....+.+.....-...+.+...|.++++. .
T Consensus 20 ~~~~~~~gEgP~w~~~~~~L--~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~------------~ 85 (307)
T COG3386 20 LDKGATLGEGPVWDPDRGAL--LWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE------------H 85 (307)
T ss_pred eecccccccCccCcCCCCEE--EEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc------------c
Confidence 34455566778888888755 2211111111111 122333333333234445556666666653 4
Q ss_pred eEEEEEcCCccc-cceeeeecCC-CCCeEEEEEcCCCCEEEEEeC-----C----CEEEEEEcc-CCccccceeeeeccc
Q 001403 366 NFKVWDIGACSM-LFKTALVRDP-GVSVNRVVWSPDGSLLGVAYS-----K----HIVQLYAYH-GGSDARQQLEIDAHV 433 (1084)
Q Consensus 366 ~v~iwd~~~~~~-~~~~~~~~~h-~~~V~~v~fspdg~~las~~~-----d----g~v~iwd~~-~~~~~~~~~~l~~h~ 433 (1084)
.+.+++.++... ........+. ...-+.+...|+|.+-++... . ..-.||-+. .+...+ .+..|-
T Consensus 86 g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~---l~~~~~ 162 (307)
T COG3386 86 GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVR---LLDDDL 162 (307)
T ss_pred ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEE---eecCcE
Confidence 556666654443 1111112222 245667889999987776543 1 112455555 444333 344555
Q ss_pred ccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC--Cce-----eeEeccCCCcEEEEeecccCCCcEEEEEecCC-eEEE
Q 001403 434 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--GSR-----TYSFEGHGAPVYSLCPHAKENIHFIFSISVDG-KIKA 505 (1084)
Q Consensus 434 ~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~--g~~-----~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-~i~i 505 (1084)
..-+.|+||||++. +.++-+..+.|.-|++.. +.. ...+....+..-.++. +.+|.+.+++...| .|..
T Consensus 163 ~~~NGla~SpDg~t-ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~v--DadG~lw~~a~~~g~~v~~ 239 (307)
T COG3386 163 TIPNGLAFSPDGKT-LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAV--DADGNLWVAAVWGGGRVVR 239 (307)
T ss_pred EecCceEECCCCCE-EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEE--eCCCCEEEecccCCceEEE
Confidence 56678999999984 444455567888887652 211 1122223344444555 55666665555554 8999
Q ss_pred EECCCCCceEeecCCCCeEEEEEEc-CCCCEEEEEee
Q 001403 506 WLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGT 541 (1084)
Q Consensus 506 wd~~~~~~~~~~~~~~~~i~~~~~s-~d~~~l~~~~~ 541 (1084)
|+.+ ++....+..+...+++++|- ++.+.|++.+.
T Consensus 240 ~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 240 FNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 9988 77777777776777788874 45666665553
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0016 Score=68.25 Aligned_cols=99 Identities=15% Similarity=0.289 Sum_probs=83.9
Q ss_pred HHHHHHHhhhhcChHHHHHHHHHhcCCCh----------hHHHHHHHhcCcCHHHHHHHhccc-ccccCccccchhhhHH
Q 001403 8 LVFLILQFLNEEGFTESAHMLERESRFYF----------DMKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYFEI 76 (1084)
Q Consensus 8 ~~rli~q~L~~~g~~~s~~~l~~Es~~~~----------~~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~l 76 (1084)
+..+|..++...|..+.+..|-+|+|... ++.++.+++.+|+-.-|++.+..- ..+.+. ..++-|.+
T Consensus 119 ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE~~L 196 (394)
T KOG2817|consen 119 LNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLEFKL 196 (394)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHHHHH
Confidence 58899999999999999999999999864 279999999999999999998764 222222 22388999
Q ss_pred HHhHHHhhhcCCCHH--HHHHHHHhhccccCCCC
Q 001403 77 RKQNFFEALDGHDIA--KALNILKKDLKDFAPGN 108 (1084)
Q Consensus 77 ~~q~~~Ell~~~~~~--~a~~~l~~~l~~~~~~~ 108 (1084)
..+.|++++..|... +|+...|+.++|+....
T Consensus 197 h~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~ 230 (394)
T KOG2817|consen 197 HSLHFLSLIRGGKSDQREALRYARTHFAPFVADH 230 (394)
T ss_pred HHHHHHHHHhcCCcCcHHHHHHHHHhcCccccch
Confidence 999999999998877 99999999999996544
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.016 Score=57.81 Aligned_cols=190 Identities=12% Similarity=0.086 Sum_probs=116.3
Q ss_pred ccccCCCccCCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCC
Q 001403 311 FQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 390 (1084)
Q Consensus 311 f~~~~~~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~ 390 (1084)
|+......+.-++....+.+-||. .|||||++|...-.|...+. |.|-|||....-... ..+..|.-.
T Consensus 96 fD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~r----GViGvYd~r~~fqrv--gE~~t~GiG 163 (366)
T COG3490 96 FDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNR----GVIGVYDAREGFQRV--GEFSTHGIG 163 (366)
T ss_pred ECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCC----ceEEEEeccccccee--cccccCCcC
Confidence 343334444445566667777886 79999999999766655554 899999998433322 225567777
Q ss_pred eEEEEEcCCCCEEEEEeC------------------CCEEEEEEccCCccccceeeee--cccccEeEEEeecCCCcEEE
Q 001403 391 VNRVVWSPDGSLLGVAYS------------------KHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISV 450 (1084)
Q Consensus 391 V~~v~fspdg~~las~~~------------------dg~v~iwd~~~~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~l 450 (1084)
...+.+.+||+.++.+.. .-++.+-|..+|+.+.+. ++. -+.-.|..++..+||. .+
T Consensus 164 pHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh-~Lp~~l~~lSiRHld~g~dgt--vw 240 (366)
T COG3490 164 PHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKH-TLPASLRQLSIRHLDIGRDGT--VW 240 (366)
T ss_pred cceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhc-cCchhhhhcceeeeeeCCCCc--EE
Confidence 888999999999998743 123566676777765533 344 4556789999999998 44
Q ss_pred EEEeCCCc-----EEEEECCCCceeeEec-------cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEe
Q 001403 451 ITCGDDKT-----IKVWDAVTGSRTYSFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD 516 (1084)
Q Consensus 451 ~s~~~d~~-----i~vwd~~~g~~~~~~~-------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 516 (1084)
+.+-..|. -.|=-...|+.+.-+. .....|-+++.+- .++...+|.-..+...+||..++.....
T Consensus 241 fgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~-~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 241 FGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR-RDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred EEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc-cCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 44432221 1111112333333221 1223456666642 2444444555556688999988776543
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.016 Score=68.62 Aligned_cols=147 Identities=12% Similarity=0.121 Sum_probs=101.8
Q ss_pred CCcEEEEE-eCCCeEEEEEcCCceeeeeecccccC-EEEEEEcCC-------CCEEEEEeCCCcEEEEeCCCCceeeeee
Q 001403 847 DNNVIAIG-MDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDA-------LNILVSSGGDAQIFVWDVDGWGIQTCRS 917 (1084)
Q Consensus 847 d~~~la~g-~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~spd-------~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 917 (1084)
+.++|+.- .....|+-.|+..|+.+..+..|... |.. |.|+ ......|-.+..+..||..-.. .++
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~ 566 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKL 566 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCC---Cce
Confidence 44454443 35678999999999999999987654 544 4443 2234556677889999987532 112
Q ss_pred eecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001403 918 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH 997 (1084)
Q Consensus 918 ~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vw 997 (1084)
+.............+|++-+.+|.+.+.+.+|.|++||- .|..-.+.+++-..+|.+|..+.||++|+..+ +..+.++
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi 644 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLI 644 (794)
T ss_pred eeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEE
Confidence 211111111223577888888888777789999999994 45556666767789999999999999998664 6678888
Q ss_pred EcC
Q 001403 998 EAS 1000 (1084)
Q Consensus 998 d~~ 1000 (1084)
+..
T Consensus 645 ~t~ 647 (794)
T PF08553_consen 645 DTL 647 (794)
T ss_pred EEe
Confidence 753
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.096 Score=57.87 Aligned_cols=83 Identities=10% Similarity=0.059 Sum_probs=56.4
Q ss_pred CCCCccEEEecCCCCEEEEEeC-CeEEEEEcCCceeEEEEcCCCCCeEE-EE-EcCCC---------------Cc-EEEE
Q 001403 793 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATS-LA-FNPHD---------------NN-VIAI 853 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~sd-g~i~vwd~~~~~~~~~~~~~~~~i~~-l~-~s~~d---------------~~-~la~ 853 (1084)
....+.+++.+|++++.|+.++ |.|.++|+.++..++..++..+.=.. +. ..+.+ .. +++-
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 3456788999999998888764 99999999999888887765432111 11 11100 11 3344
Q ss_pred EeCCCeEEEEEcCCceeeeeec
Q 001403 854 GMDDSTILIYNARSSEVISKLE 875 (1084)
Q Consensus 854 g~~dg~i~iwd~~~~~~~~~l~ 875 (1084)
+-.-|.|.||.+.+|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 5678899999998887665554
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.5 Score=55.66 Aligned_cols=227 Identities=12% Similarity=0.022 Sum_probs=114.1
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC-C-----EEEEEEccCCccccceeeeecccccEeE
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK-H-----IVQLYAYHGGSDARQQLEIDAHVGNVND 438 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d-g-----~v~iwd~~~~~~~~~~~~l~~h~~~V~~ 438 (1084)
..+..+|..+........ +. +...-.++++. +|...++|+.| | ++..||..+++-.. ...+.........
T Consensus 301 ~~ve~yd~~~~~w~~~a~-m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v 376 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAP-MP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGV 376 (571)
T ss_pred ceeEEecCCcCcEeecCC-CC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCcccccee
Confidence 667777777653332221 11 12223333433 46788888888 3 57888888765222 1122222222222
Q ss_pred EEeecCCCcEEEEEEeCCC-----cEEEEECCCCcee--eEeccCCCcEEEEeecccCCCcEEEEEecCC------eEEE
Q 001403 439 LAFSAPCKQISVITCGDDK-----TIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDG------KIKA 505 (1084)
Q Consensus 439 l~~s~d~~~l~l~s~~~d~-----~i~vwd~~~g~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg------~i~i 505 (1084)
.. -+|. +.|.||.|| +|..||..+.+-- ..+.........+.+ +|.+.+.|+.++ ++..
T Consensus 377 ~~--l~g~--iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~----~g~iYi~GG~~~~~~~l~sve~ 448 (571)
T KOG4441|consen 377 AV--LDGK--LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL----GGKLYIIGGGDGSSNCLNSVEC 448 (571)
T ss_pred EE--ECCE--EEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE----CCEEEEEcCcCCCccccceEEE
Confidence 22 2565 677888886 4778887766432 212111112222222 567778887664 4667
Q ss_pred EECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCC-CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCE
Q 001403 506 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 584 (1084)
Q Consensus 506 wd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 584 (1084)
||..+..-.....-.......-.-.-++...+.|+.++. ....|..||..+.+....- ........+..+.. ++..
T Consensus 449 YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~-~m~~~rs~~g~~~~--~~~l 525 (571)
T KOG4441|consen 449 YDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA-PMTSPRSAVGVVVL--GGKL 525 (571)
T ss_pred EcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc-cCccccccccEEEE--CCEE
Confidence 777665433322222221111122345666666665431 1334788998876654432 11111122222222 4566
Q ss_pred EEEEECCC-----cEEEEECCCCeEEE
Q 001403 585 ILAAGDDH-----VIKIWDMNKVQLLT 606 (1084)
Q Consensus 585 l~~~~~dg-----~i~iwd~~~~~~~~ 606 (1084)
.++|+.|| +|..||..+.+...
T Consensus 526 y~vGG~~~~~~l~~ve~ydp~~d~W~~ 552 (571)
T KOG4441|consen 526 YAVGGFDGNNNLNTVECYDPETDTWTE 552 (571)
T ss_pred EEEecccCccccceeEEcCCCCCceee
Confidence 67777665 46667766655443
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.03 Score=61.44 Aligned_cols=215 Identities=11% Similarity=0.113 Sum_probs=116.8
Q ss_pred CeeecCCCCCccccccCcCCCCCCCccEEEecCC----CCEEEEEe----------C-CeEEEEEcCCc----eeEEEE-
Q 001403 772 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN----DAYLFSAS----------G-GVISLYIVMTF----KTILTI- 831 (1084)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d----g~~l~~~s----------d-g~i~vwd~~~~----~~~~~~- 831 (1084)
+++.|..+...+....+...++...+..+.+..+ ..++++|. . |.|.++++... ..+..+
T Consensus 4 i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~ 83 (321)
T PF03178_consen 4 IRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH 83 (321)
T ss_dssp EEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE
T ss_pred EEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE
Confidence 3445555555455555543122222233334332 46777764 1 77999999884 122211
Q ss_pred -cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce-eeeeecc-cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001403 832 -MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 908 (1084)
Q Consensus 832 -~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~-~~~~l~~-h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~ 908 (1084)
....++|++++--. ++ |+++. .+.|++|++...+ ....-.- ....++++... +.+++.|+....|.++..+
T Consensus 84 ~~~~~g~V~ai~~~~--~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 84 STEVKGPVTAICSFN--GR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEESS-EEEEEEET--TE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred EEeecCcceEhhhhC--CE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 12457788887763 44 44444 4789999998877 4332221 22355555554 6699999988889888655
Q ss_pred CCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCC-------cc-eeeEeecCC-CCCEEEE--
Q 001403 909 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE-------LT-CLKQWFPIS-SVPISQA-- 976 (1084)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~-------~~-~~~~~~~~h-~~~v~~l-- 976 (1084)
...... ..+...... ..++++.|-+|+..++++ .+|.+.++.... +. .+.....-| ...|+++
T Consensus 158 ~~~~~l-~~va~d~~~----~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~ 232 (321)
T PF03178_consen 158 EENNKL-ILVARDYQP----RWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRR 232 (321)
T ss_dssp TTTE-E-EEEEEESS-----BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE
T ss_pred ccCCEE-EEEEecCCC----ccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEE
Confidence 422111 122221111 258899998776655554 678899888752 22 222222222 5677777
Q ss_pred -EEcc--CCC------EEEEEeCCCcEEEE
Q 001403 977 -TFSC--DCR------MVFTSFVDGTLSIH 997 (1084)
Q Consensus 977 -~fs~--dg~------~l~t~~~dg~i~vw 997 (1084)
.+.| .+. .++.++.+|.|.+.
T Consensus 233 ~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 233 GSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 5555 222 37778899998843
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.13 Score=54.77 Aligned_cols=214 Identities=11% Similarity=0.041 Sum_probs=124.4
Q ss_pred EeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecC
Q 001403 440 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 519 (1084)
Q Consensus 440 ~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 519 (1084)
.|.++... ++.+--..+.|.-|+..+|+.. .+. +.+.+.++... + .+..|+++... +.+++.+.......+..
T Consensus 31 ~w~~~~~~-L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~-d-~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGA-LLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALI-D-AGGRLIACEHG--VRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCE-EEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceee-c-CCCeEEEEccc--cEEEeccCCceeEEecc
Confidence 46677664 3455556788899998776432 222 22223333321 2 22344444332 34455554444222211
Q ss_pred -----CCCeEEEEEEcCCCCEEEEEee-----CC--CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEE
Q 001403 520 -----PGLGCTRMAYSANGRRLFSCGT-----SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 587 (1084)
Q Consensus 520 -----~~~~i~~~~~s~d~~~l~~~~~-----~~--~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 587 (1084)
...........|+|.+.+.... .. ...+.++.+|. .+..++.+..+- ..-+.++||||++.++.
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~---~~~NGla~SpDg~tly~ 179 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL---TIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE---EecCceEECCCCCEEEE
Confidence 1124556788899888776543 11 12345666665 466666665544 45678999999988887
Q ss_pred EEC-CCcEEEEECCC--CeE---EEEEcCCCCCCCcceEEEecCCCEEEEEECCC-eEEEEEcCCCCeeeecccccccee
Q 001403 588 AGD-DHVIKIWDMNK--VQL---LTTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNLR 660 (1084)
Q Consensus 588 ~~~-dg~i~iwd~~~--~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~ 660 (1084)
+.. .+.|.-|++.. +.. ...+.........-.++...+|.+.+++..+| .|.+|+.. ++.+..+..+...++
T Consensus 180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t 258 (307)
T COG3386 180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPT 258 (307)
T ss_pred EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCc
Confidence 654 47788887652 211 11111111122345688888898886555554 89999988 888888887767777
Q ss_pred EEEEc
Q 001403 661 KLSVN 665 (1084)
Q Consensus 661 ~~~~~ 665 (1084)
+++|.
T Consensus 259 ~~~Fg 263 (307)
T COG3386 259 NPAFG 263 (307)
T ss_pred cceEe
Confidence 66665
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.86 Score=55.26 Aligned_cols=248 Identities=9% Similarity=0.013 Sum_probs=125.3
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC------
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK------ 409 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d------ 409 (1084)
.+..+.+||||++||.+... .|.. ...++|-|+.++...... +.+ .-..++|++|++.|+....+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~--~G~E--~~~l~v~d~~tg~~l~~~--i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~ 198 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDF--LSRR--QYGIRFRNLETGNWYPEL--LDN---VEPSFVWANDSWTFYYVRKHPVTLLP 198 (686)
T ss_pred EEeEEEECCCCCEEEEEecC--CCcE--EEEEEEEECCCCCCCCcc--ccC---cceEEEEeeCCCEEEEEEecCCCCCC
Confidence 56778999999999997433 2322 277889999876532221 111 12569999999988776542
Q ss_pred CEEEEEEccCCccccceeeeecccccEe-EEEeecCCCcEEEEEEe-CCCcEEEEECC--CCceeeEeccCCCcEEEEee
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCG-DDKTIKVWDAV--TGSRTYSFEGHGAPVYSLCP 485 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~-~l~~s~d~~~l~l~s~~-~d~~i~vwd~~--~g~~~~~~~~h~~~v~~~~~ 485 (1084)
..|..+++.++..-... .+........ .+..+.|++.+++.+.+ .++.+.+++.. ++.....+..-.+....+.
T Consensus 199 ~~v~~h~lgt~~~~d~l-v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 276 (686)
T PRK10115 199 YQVWRHTIGTPASQDEL-VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD- 276 (686)
T ss_pred CEEEEEECCCChhHCeE-EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-
Confidence 35788888887321111 2222222233 33345588853322222 24578888843 3442222221122222222
Q ss_pred cccCCCcEEEEEecC-C--eEEEEECCC-CCceEeecC-CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 486 HAKENIHFIFSISVD-G--KIKAWLYDS-LGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~d-g--~i~iwd~~~-~~~~~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
+ ..+ .+++....+ . .|...++.. .+....+.. ....+..+.+. ++.|+.... .++...+.+++..++..
T Consensus 277 ~-~~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~~~l~~~~~~~~~~- 350 (686)
T PRK10115 277 H-YQH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGLTSLRQINRKTREV- 350 (686)
T ss_pred e-CCC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCEEEEEEEcCCCCce-
Confidence 1 112 233332222 2 233344442 222223333 23467777776 445555443 23466688888754433
Q ss_pred eeee-ccccccCceEEEEEc--CCCC-EEEEEE---CCCcEEEEECCCCe
Q 001403 561 RTYQ-GLQLQHNSVSVVHFD--TAKD-QILAAG---DDHVIKIWDMNKVQ 603 (1084)
Q Consensus 561 ~~~~-~~~~~~~~v~~~~~s--~~~~-~l~~~~---~dg~i~iwd~~~~~ 603 (1084)
..+. ... ..+..+.++ +++. .+++.+ .-+.++.+|..+++
T Consensus 351 ~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 351 IGIAFDDP---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEecCCCC---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 3332 111 123333344 4444 333332 45778888988765
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00016 Score=79.24 Aligned_cols=204 Identities=13% Similarity=0.100 Sum_probs=128.4
Q ss_pred cEEEEeecccCCCcEEEEEecCCeEEEEECCCCCce--EeecCCCCeEEEEEEcC-CCCEEEEEeeCCCCCeeEEEecCC
Q 001403 479 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNES 555 (1084)
Q Consensus 479 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~~wd~~ 555 (1084)
.+.++++....+...++.|..+|.|-+-.++..... .....+...+++++|++ |.+.||++-.....+..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 345555544445567888889999988877654322 23445566889999988 566777765444556779999998
Q ss_pred Cc--eEe--eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC-eEEEEEcCCCCCCCcceEEEec-CCCEE
Q 001403 556 EG--AIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK-NGTLL 629 (1084)
Q Consensus 556 ~~--~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l 629 (1084)
++ .+. ..+.+. ......+++|-.+.+.+++|.....+.++|++.. .....+. +..+..+...| .+.++
T Consensus 138 s~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYF 211 (783)
T ss_pred cccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCce
Confidence 76 221 122221 1245568889888999999999999999998732 2222221 12356778888 77777
Q ss_pred EEEECCCeEEEEEcCCC--Ceeeecccc----ccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccc
Q 001403 630 AVIANENRIKILETPES--NSVDAAGVL----SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 703 (1084)
Q Consensus 630 ~~~~~dg~i~iwd~~~~--~~~~~~~~~----~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 703 (1084)
++-. ||.|.+||..-. .++..+... ...+..++++|... |...+..-..++|+
T Consensus 212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt--------------------glla~l~RdS~tIr 270 (783)
T KOG1008|consen 212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT--------------------GLLAVLSRDSITIR 270 (783)
T ss_pred eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc--------------------chhhhhccCcceEE
Confidence 7665 899999994321 223322222 23477888887532 33333333446777
Q ss_pred ccccee
Q 001403 704 VEKPLF 709 (1084)
Q Consensus 704 ~w~~~~ 709 (1084)
++++..
T Consensus 271 lydi~~ 276 (783)
T KOG1008|consen 271 LYDICV 276 (783)
T ss_pred Eecccc
Confidence 777653
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.7 Score=56.01 Aligned_cols=245 Identities=9% Similarity=0.027 Sum_probs=123.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-----CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC-----Cc
Q 001403 389 VSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KT 458 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~d-----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d-----~~ 458 (1084)
-.+..+.+||||++||.+.+. ..|++-|+.+|+.+.. .+.+- -..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~~---~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDNV---EPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccCc---ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 356678899999999987432 3589999998864321 12221 146999999985 33433322 46
Q ss_pred EEEEECCCC--ceeeEeccCCCcEEEEeecccCCCcEEEEEecC---CeEEEEECCC--CCceEeecCCCCeEEEEEEcC
Q 001403 459 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDS--LGARVDYDAPGLGCTRMAYSA 531 (1084)
Q Consensus 459 i~vwd~~~g--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~--~~~~~~~~~~~~~i~~~~~s~ 531 (1084)
|..+++.++ +....+........ +....+.++.+++..+.. +.+.+++.+. ......+.........+. .
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~ 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--H 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--e
Confidence 888898888 33333433333333 222224455665544433 4688888533 222222222222222222 2
Q ss_pred CCCEEEEEeeCCCCCeeEEEecCC-CceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC-CeEEEEEc
Q 001403 532 NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTID 609 (1084)
Q Consensus 532 d~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~ 609 (1084)
.+..++..+..+.....|...++. .++....+.... ...+..+.+.. +..+++...+|.-+++-+.. +..+..+.
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~--~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRE--NIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIA 354 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCC--CCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence 334555444333334456666665 232222222212 23577777763 34555566677655554332 22334433
Q ss_pred CCCCCCCcceEEEe--cCCC-EEEEEEC---CCeEEEEEcCCC
Q 001403 610 AGGGLPENPRICFN--KNGT-LLAVIAN---ENRIKILETPES 646 (1084)
Q Consensus 610 ~~~~~~~v~~v~~s--~~~~-~l~~~~~---dg~i~iwd~~~~ 646 (1084)
.... ..+..+.++ +++. .+++.+. -+.+..+|..++
T Consensus 355 ~~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 355 FDDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 2111 112222334 3333 3333332 367777887765
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.07 E-value=1.3 Score=53.84 Aligned_cols=206 Identities=13% Similarity=0.151 Sum_probs=119.7
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCc--------EEEEeeccc--------------CCCcEEEEEecCCeEEEE
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP--------VYSLCPHAK--------------ENIHFIFSISVDGKIKAW 506 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~--------v~~~~~~~~--------------~~~~~l~s~s~dg~i~iw 506 (1084)
.++.++.++.|.-.|.++|+.+-++...... ...+++... ..+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4666677788888888888887665432110 112222211 123478888899999999
Q ss_pred ECCCCCceEeecCCCC------------eEEEEEEcC--CCCEEEEEeeCCC------CCeeEEEecCCCceEeeeeecc
Q 001403 507 LYDSLGARVDYDAPGL------------GCTRMAYSA--NGRRLFSCGTSKE------GESFLVEWNESEGAIKRTYQGL 566 (1084)
Q Consensus 507 d~~~~~~~~~~~~~~~------------~i~~~~~s~--d~~~l~~~~~~~~------~~~~i~~wd~~~~~~~~~~~~~ 566 (1084)
|.++++....+..... ....+.-+| .+..+++++...+ .++.|+-+|..+|+.+-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9988887765432211 000111112 2334555543222 2578999999999998776521
Q ss_pred cc--------------ccCce-EEEEEcCCCCEEEEEE------------------CCCcEEEEECCCCeEEEEEcCCCC
Q 001403 567 QL--------------QHNSV-SVVHFDTAKDQILAAG------------------DDHVIKIWDMNKVQLLTTIDAGGG 613 (1084)
Q Consensus 567 ~~--------------~~~~v-~~~~~s~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~ 613 (1084)
.. ....+ ...++.++...++.+. ..+.|.-.|.++|+....++...+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 10 00111 2345556555555422 235567778889998877764211
Q ss_pred ------C-CCcceEEEec-CCC---EEEEEECCCeEEEEEcCCCCeeeeccc
Q 001403 614 ------L-PENPRICFNK-NGT---LLAVIANENRIKILETPESNSVDAAGV 654 (1084)
Q Consensus 614 ------~-~~v~~v~~s~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~ 654 (1084)
. ....-+.+.. +|+ .++.++.+|.+.++|..+++.+...+.
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 0 0011122333 563 788999999999999999988766543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00036 Score=76.61 Aligned_cols=202 Identities=11% Similarity=0.115 Sum_probs=123.2
Q ss_pred CCceEEEEcCC--CceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC-CCCEEEEEe----
Q 001403 335 SSPMSMDFHPV--QHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVAY---- 407 (1084)
Q Consensus 335 ~~V~~v~~spd--g~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~las~~---- 407 (1084)
..+.|++.+-+ ...+|+|+.+ |.|.+-.+....-. ......+|....++++|++ |...||+|-
T Consensus 57 qy~kcva~~y~~d~cIlavG~at---------G~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhr 126 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSAT---------GNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHR 126 (783)
T ss_pred CCceeehhhcCCchhhhhhcccc---------CceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhc
Confidence 36667766543 4577777666 77776666432211 1223556888999999998 778888883
Q ss_pred CCCEEEEEEccCCcc-ccceeeeec-ccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc-eeeEeccCCCcEEEEe
Q 001403 408 SKHIVQLYAYHGGSD-ARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLC 484 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~-~~~~~~l~~-h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~-~~~~~~~h~~~v~~~~ 484 (1084)
.|..+.|||+.++-. .+....+.+ ......+++|..|.+ ++.+|.....+.++|++... ....+ .+..+..+.
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~t 202 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGIT 202 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--hhhhcccce
Confidence 456799999998721 111111222 444667899998888 78889888899999987321 11111 222344455
Q ss_pred ecccCCCcEEEEEecCCeEEEEE-CCCCCce-EeecCC----CCeEEEEEEcCCCCE-EEEEeeCCCCCeeEEEecCC
Q 001403 485 PHAKENIHFIFSISVDGKIKAWL-YDSLGAR-VDYDAP----GLGCTRMAYSANGRR-LFSCGTSKEGESFLVEWNES 555 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~dg~i~iwd-~~~~~~~-~~~~~~----~~~i~~~~~s~d~~~-l~~~~~~~~~~~~i~~wd~~ 555 (1084)
+.|- .+.++++-. ||.|.+|| ...-+.. ..+... ...+..++|.|...- ++++.. ..++|+++|+.
T Consensus 203 Vdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIrlydi~ 275 (783)
T KOG1008|consen 203 VDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIRLYDIC 275 (783)
T ss_pred ecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEEEeccc
Confidence 5442 234666555 99999999 3332222 222111 125889999996543 444443 26779999875
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.002 Score=44.09 Aligned_cols=39 Identities=36% Similarity=0.622 Sum_probs=34.6
Q ss_pred ceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001403 868 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906 (1084)
Q Consensus 868 ~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd 906 (1084)
++.+..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0042 Score=68.75 Aligned_cols=93 Identities=16% Similarity=0.168 Sum_probs=75.9
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 001403 836 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 914 (1084)
Q Consensus 836 ~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~-~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~ 914 (1084)
..+.-+.|+| .-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|-|||+.||.|-.||+|++-|++++....
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4577889999 88899999999999999988 777888887877787 99999999999999999999999999976444
Q ss_pred eeeeecCCCCccCCCCceEEEEc
Q 001403 915 CRSLQTPDGVMTLAPSETHIQFH 937 (1084)
Q Consensus 915 ~~~~~~~~~~~~~~~~v~~~~~s 937 (1084)
...... ...|..+.|+
T Consensus 99 ~~~~s~-------e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSV-------ETDISKGIWD 114 (665)
T ss_pred cccccc-------ccchheeecc
Confidence 321111 1256777776
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.46 Score=48.54 Aligned_cols=187 Identities=9% Similarity=0.091 Sum_probs=115.8
Q ss_pred CCccEEEecCCCCEEEEEe-C--CeEEEEEcCCceeEEEEcCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee
Q 001403 795 EAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 870 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~s-d--g~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~ 870 (1084)
.-...+.|..+|.++-+.+ . ..|+.+|+.+++......-.. -.--.++.. ++++...--.++...+||..+-+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 3445788878888877776 3 469999999998876654332 233445555 355666677899999999999988
Q ss_pred eeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCC
Q 001403 871 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HET 949 (1084)
Q Consensus 871 ~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~ 949 (1084)
+.++. ..+.=+.++ .|++.|+.+.....|.++|..+-+......+....... ..+.-+.+- +|...|=. ...
T Consensus 123 ~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv---~~LNELE~i-~G~IyANVW~td 195 (264)
T PF05096_consen 123 IGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV---SNLNELEYI-NGKIYANVWQTD 195 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE------EEEEEEE-TTEEEEEETTSS
T ss_pred EEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEEC---CCcEeEEEE-cCEEEEEeCCCC
Confidence 88876 345567777 46777777777778999998876554433333211111 245556665 56555544 667
Q ss_pred eEEEEEcCCcceeeEeecC-----------C---CCCEEEEEEccCCCEEEEEeC
Q 001403 950 HLAIYEAEELTCLKQWFPI-----------S---SVPISQATFSCDCRMVFTSFV 990 (1084)
Q Consensus 950 ~i~vwd~~~~~~~~~~~~~-----------h---~~~v~~l~fs~dg~~l~t~~~ 990 (1084)
.|..-|..+|+....+-.. + ..-...|++.|++..|+..+.
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 7888899999887653110 1 245778999887665555443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.31 Score=53.91 Aligned_cols=83 Identities=11% Similarity=0.221 Sum_probs=58.4
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCC-----------------CE
Q 001403 522 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-----------------DQ 584 (1084)
Q Consensus 522 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-----------------~~ 584 (1084)
..+.+++.+|++++.++. |.-|+|.++|+.++..++.++|.. +..+.-+.....+ .+
T Consensus 308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEE
Confidence 357889999998877764 336779999999999999998876 2222222211111 12
Q ss_pred EE-EEECCCcEEEEECCCCeEEEEEcC
Q 001403 585 IL-AAGDDHVIKIWDMNKVQLLTTIDA 610 (1084)
Q Consensus 585 l~-~~~~dg~i~iwd~~~~~~~~~~~~ 610 (1084)
|+ -+-.-|.|.||.+++|..+..+..
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 33 366789999999999988887764
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.17 Score=55.45 Aligned_cols=180 Identities=15% Similarity=0.165 Sum_probs=106.3
Q ss_pred CeEEEEEcCCceeeeeeccc-ccCEEE---EEEcCC----CCEEEEEeC----------CCcEEEEeCCCCc--eeeeee
Q 001403 858 STILIYNARSSEVISKLEGH-SKRVTG---LVFSDA----LNILVSSGG----------DAQIFVWDVDGWG--IQTCRS 917 (1084)
Q Consensus 858 g~i~iwd~~~~~~~~~l~~h-~~~V~~---l~~spd----~~~l~s~s~----------dg~I~iwd~~~~~--~~~~~~ 917 (1084)
..|++.|..+.+.+..+.-. ...+++ +.|..+ ..+++.|+. .|.|.++++.... ......
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35788888877766554321 122443 334332 467776653 2889999999841 011111
Q ss_pred eecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcc-eeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 001403 918 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT-CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 996 (1084)
Q Consensus 918 ~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~-~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~v 996 (1084)
+....- .++|.+++-- +.+|+++.++.|.+|++...+ ....-.......+.++... +.++++|.....+.+
T Consensus 82 i~~~~~----~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 82 IHSTEV----KGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEEE----SS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEE
T ss_pred EEEEee----cCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEE
Confidence 111111 1257777655 445888888999999998777 4443332224456666554 559999998888998
Q ss_pred EEcCCCce-eEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 997 HEASNLEV-QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 997 wd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
+....... +..+. . .....+.+++.|-++ ++.+++++.+|++.++....
T Consensus 154 ~~~~~~~~~l~~va-~-------d~~~~~v~~~~~l~d-~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 154 LRYDEENNKLILVA-R-------DYQPRWVTAAEFLVD-EDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEETTTE-EEEEE-E-------ESS-BEEEEEEEE-S-SSEEEEEETTSEEEEEEE-S
T ss_pred EEEEccCCEEEEEE-e-------cCCCccEEEEEEecC-CcEEEEEcCCCeEEEEEECC
Confidence 86654221 22222 1 112345566777653 46999999999999999864
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.63 Score=48.65 Aligned_cols=205 Identities=18% Similarity=0.158 Sum_probs=115.2
Q ss_pred CeEEEEEcCCCCcEEEEEe---CCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEe-CCCCce
Q 001403 837 TATSLAFNPHDNNVIAIGM---DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD-VDGWGI 912 (1084)
Q Consensus 837 ~i~~l~~s~~d~~~la~g~---~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd-~~~~~~ 912 (1084)
.+.+.++++ +++.+|... ....++++.... .....+.+ ..++.-.|++++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~-~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGG-PVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCC-cceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 688999999 677666555 333556655432 22222233 3688889999988877777677777774 333332
Q ss_pred eeeeeeecCCCCccCCCCceEEEEccCCCEEEEEe----CCeEEEEEcC---Cc--cee---eEeecCCCCCEEEEEEcc
Q 001403 913 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAE---EL--TCL---KQWFPISSVPISQATFSC 980 (1084)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~----d~~i~vwd~~---~~--~~~---~~~~~~h~~~v~~l~fs~ 980 (1084)
... .+..... . ..|+.+.+||||..+|... ++.|.+--+. .+ ..+ ..........++.+.|.+
T Consensus 101 ~~~-~v~~~~~-~---~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 101 EPV-EVDWPGL-R---GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred eeE-Eeccccc-C---CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 211 1111111 1 1599999999999999843 6777777553 23 111 111112256889999999
Q ss_pred CCCEEEEEeCCCc-EEE-EEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCCC
Q 001403 981 DCRMVFTSFVDGT-LSI-HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1058 (1084)
Q Consensus 981 dg~~l~t~~~dg~-i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~~ 1058 (1084)
++.+++.+...+. +.. .....+... .+ +.. ......++++-++ .. +.+..++.+.- ...+..
T Consensus 176 ~~~L~V~~~~~~~~~~~~v~~dG~~~~-~l------~~~--~~~~~v~a~~~~~---~~-~~~t~~~~~~~---~~~~~~ 239 (253)
T PF10647_consen 176 DSTLVVLGRSAGGPVVRLVSVDGGPST-PL------PSV--NLGVPVVAVAASP---ST-VYVTDDGGVLQ---SRSGAS 239 (253)
T ss_pred CCEEEEEeCCCCCceeEEEEccCCccc-cc------CCC--CCCcceEEeeCCC---cE-EEEECCCcEEE---CCCCCc
Confidence 9998777665544 333 333322211 11 011 1223334444443 33 44555555443 567777
Q ss_pred cccCCCCC
Q 001403 1059 WAVLPPDE 1066 (1084)
Q Consensus 1059 ~~~~~~~~ 1066 (1084)
|...+...
T Consensus 240 W~~v~~~~ 247 (253)
T PF10647_consen 240 WREVPGGV 247 (253)
T ss_pred ceEccCCC
Confidence 88766554
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.15 Score=53.33 Aligned_cols=147 Identities=18% Similarity=0.179 Sum_probs=92.8
Q ss_pred CCccEEEecCCCCEEEEEe--CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEE-cCCceee
Q 001403 795 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN-ARSSEVI 871 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd-~~~~~~~ 871 (1084)
..+.+.++|+||+.+|... ++.-.+|-...+....... ....++...|++ ++.+.+....+...+++. ..+++..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 3688999999999888776 5544444444444333332 233788889999 688887777777777774 3333321
Q ss_pred -eeec--ccccCEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCcee----eeeeeecCCCCccCCCCceEEEEccCCC
Q 001403 872 -SKLE--GHSKRVTGLVFSDALNILVSSG---GDAQIFVWDVDGWGIQ----TCRSLQTPDGVMTLAPSETHIQFHKDQT 941 (1084)
Q Consensus 872 -~~l~--~h~~~V~~l~~spd~~~l~s~s---~dg~I~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 941 (1084)
..+. .-.+.|+.+.+||||.++|... .++.|.+=-+...... ....+..... ....++.++|.+++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~---~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP---LLSDVTDVAWSDDST 178 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc---ccCcceeeeecCCCE
Confidence 1121 1122899999999999988765 3577877766543222 1111111111 123689999999999
Q ss_pred EEEEE
Q 001403 942 RFLLV 946 (1084)
Q Consensus 942 ~la~~ 946 (1084)
+++.+
T Consensus 179 L~V~~ 183 (253)
T PF10647_consen 179 LVVLG 183 (253)
T ss_pred EEEEe
Confidence 88875
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.81 Score=50.09 Aligned_cols=110 Identities=21% Similarity=0.230 Sum_probs=57.7
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcc-cccee--eeecCCCCCeEEEEEcCC----CCEEEEEeC
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACS-MLFKT--ALVRDPGVSVNRVVWSPD----GSLLGVAYS 408 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~-~~~~~--~~~~~h~~~V~~v~fspd----g~~las~~~ 408 (1084)
..++|+|.|||+++++-. . |.|.+++..... ..... .+..........++|+|+ +...++.+.
T Consensus 3 ~P~~~a~~pdG~l~v~e~-~---------G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAER-S---------GRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp SEEEEEEETTSCEEEEET-T---------TEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred CceEEEEeCCCcEEEEeC-C---------ceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEc
Confidence 578999999999988842 2 888888832222 11111 223445678899999994 444444332
Q ss_pred C--------CEEEEEEccCCc-cc---ccee-eeec---ccccEeEEEeecCCCcEEEEEEeCCC
Q 001403 409 K--------HIVQLYAYHGGS-DA---RQQL-EIDA---HVGNVNDLAFSAPCKQISVITCGDDK 457 (1084)
Q Consensus 409 d--------g~v~iwd~~~~~-~~---~~~~-~l~~---h~~~V~~l~~s~d~~~l~l~s~~~d~ 457 (1084)
. ..|.-|....+. .+ +.+. .+.. ....-..|+|.|||. +.++.+..+
T Consensus 73 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~~ 135 (331)
T PF07995_consen 73 ADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDGG 135 (331)
T ss_dssp E-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-TT
T ss_pred ccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCCC
Confidence 1 235555555441 11 1110 1111 222456699999995 445444333
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.37 Score=51.06 Aligned_cols=158 Identities=11% Similarity=0.027 Sum_probs=83.4
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001403 832 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 911 (1084)
Q Consensus 832 ~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~ 911 (1084)
....+.+..+..++ |+++++++..-.-..-||--...-...-..-+..|.++.|+||+.+.+.+ ..|.|+.=+.....
T Consensus 141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 34457788899999 89999888765556677643211111112245789999999998776644 88888888722211
Q ss_pred eeeee-eeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeec--CCCCCEEEEEEccCCCEEEEE
Q 001403 912 IQTCR-SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--ISSVPISQATFSCDCRMVFTS 988 (1084)
Q Consensus 912 ~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~--~h~~~v~~l~fs~dg~~l~t~ 988 (1084)
..-.. ........ -.+..++|.+++...|++..|.+. .....|+.=..... .-......+.|.++.+-++.
T Consensus 219 ~~w~~~~~~~~~~~----~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l- 292 (302)
T PF14870_consen 219 ETWSEPIIPIKTNG----YGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL- 292 (302)
T ss_dssp EEE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred cccccccCCcccCc----eeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEE-
Confidence 00001 11111111 247899999999999998888553 45555554333222 12567889999877655554
Q ss_pred eCCCcEEEE
Q 001403 989 FVDGTLSIH 997 (1084)
Q Consensus 989 ~~dg~i~vw 997 (1084)
+.+|.+.-|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 578887665
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.64 E-value=1.6 Score=48.60 Aligned_cols=276 Identities=13% Similarity=0.102 Sum_probs=150.5
Q ss_pred CCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC-----CCCEEEEE
Q 001403 738 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-----NDAYLFSA 812 (1084)
Q Consensus 738 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-----dg~~l~~~ 812 (1084)
...+++|+..|.++||+-......+... +... .-..+|..++.-+ +...||+-
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~l-----------------llE~-----~l~~PILqv~~G~F~s~~~~~~LaVL 94 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDL-----------------LLET-----QLKDPILQVECGKFVSGSEDLQLAVL 94 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccE-----------------EEEE-----ecCCcEEEEEeccccCCCCcceEEEe
Confidence 4578889999999998753322211100 1111 1234555554322 34566666
Q ss_pred eCCeEEEEEcCC--ce-------eEEEEcCCC--CCeEEEEEcCCC----CcEEEEEeCCCeEEEEEcCCceeeeeeccc
Q 001403 813 SGGVISLYIVMT--FK-------TILTIMPPS--PTATSLAFNPHD----NNVIAIGMDDSTILIYNARSSEVISKLEGH 877 (1084)
Q Consensus 813 sdg~i~vwd~~~--~~-------~~~~~~~~~--~~i~~l~~s~~d----~~~la~g~~dg~i~iwd~~~~~~~~~l~~h 877 (1084)
.-..+.+|.+.. |. .+..+..|. .....++.-|.+ ..+|.+-+.||.+.+|+-+.-.....+.+
T Consensus 95 hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 95 HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred cCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 677888887731 11 122222232 233444444322 36889999999999999776544444444
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---------------------eeeeeeeecCCCCccCCCCceEEEE
Q 001403 878 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG---------------------IQTCRSLQTPDGVMTLAPSETHIQF 936 (1084)
Q Consensus 878 ~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~---------------------~~~~~~~~~~~~~~~~~~~v~~~~~ 936 (1084)
.--...++|.+.-..+++++.+..|.-|....-. ......+...+... .|..+.+
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l----~i~v~~~ 249 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQAL----DIQVVRF 249 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeE----EEEEEEc
Confidence 2223447888888899999999888888764200 00001111111111 2334444
Q ss_pred ccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEE-EEcc----CC---CEEEEEeCCCcEEEEEcCCCceeEEe
Q 001403 937 HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQA-TFSC----DC---RMVFTSFVDGTLSIHEASNLEVQCRI 1008 (1084)
Q Consensus 937 s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l-~fs~----dg---~~l~t~~~dg~i~vwd~~~~~~~~~~ 1008 (1084)
+.....+++-.+.++...+. +|........ .....++ .|.. ++ ..++.++.++++.||.=.+....+..
T Consensus 250 ~~~~~~IvvLger~Lf~l~~-~G~l~~~krL--d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l 326 (418)
T PF14727_consen 250 SSSESDIVVLGERSLFCLKD-NGSLRFQKRL--DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQL 326 (418)
T ss_pred CCCCceEEEEecceEEEEcC-CCeEEEEEec--CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCC
Confidence 44555566656667777765 3544333221 1222222 2221 22 24777889999999986665555443
Q ss_pred ccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 1009 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 1009 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
. ..+| ++.++.-++-...|++-+.+|.+.+-=+-.
T Consensus 327 ~----------~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 327 P----------HVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred C----------CCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 2 1112 233333332257899999999998876633
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.58 Score=51.20 Aligned_cols=239 Identities=14% Similarity=0.163 Sum_probs=120.6
Q ss_pred ccEEEecCCCCEEEEEeCCeEEEEEcCCcee---EEEEc----CCCCCeEEEEEcCC---CCcEEEEEeCC--------C
Q 001403 797 VPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTIM----PPSPTATSLAFNPH---DNNVIAIGMDD--------S 858 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~---~~~~~----~~~~~i~~l~~s~~---d~~~la~g~~d--------g 858 (1084)
...|+|.|||+++++-..|.|++++ ..+.. +..+. ........++++|+ ++.+.++.+.. .
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 5689999999998887789999999 44443 22331 23356799999992 24444433321 2
Q ss_pred eEEEEEcCCc-------ee-eeeecc---cccCEEEEEEcCCCCEEEEEeCCCc-------------EEEEeCCCCceee
Q 001403 859 TILIYNARSS-------EV-ISKLEG---HSKRVTGLVFSDALNILVSSGGDAQ-------------IFVWDVDGWGIQT 914 (1084)
Q Consensus 859 ~i~iwd~~~~-------~~-~~~l~~---h~~~V~~l~~spd~~~l~s~s~dg~-------------I~iwd~~~~~~~~ 914 (1084)
.|.-|....+ +. +..+.. .......|+|.|||.+.++.+..+. |.-.+... ....
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p~ 161 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIPA 161 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-T
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCCC
Confidence 4444544433 11 122222 1223466999999988887765443 11112111 0000
Q ss_pred eeeee---------cCCCCccCCCCceEEEEccC-CCEEEE--EeCCeEEEEEcCCcce----------------e----
Q 001403 915 CRSLQ---------TPDGVMTLAPSETHIQFHKD-QTRFLL--VHETHLAIYEAEELTC----------------L---- 962 (1084)
Q Consensus 915 ~~~~~---------~~~~~~~~~~~v~~~~~s~d-g~~la~--~~d~~i~vwd~~~~~~----------------~---- 962 (1084)
..... -..|+. ....++|.|. |.+.++ +.+..=.|..+..|.- .
T Consensus 162 dnP~~~~~~~~~~i~A~GlR----N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGLR----NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp TSTTTTSTTSTTTEEEE--S----EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCccccCCCceEEEEEeCCC----ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 00000 000111 2468999999 777776 4443222222222110 0
Q ss_pred -------eEeecCCCCCEEEEEEcc-------CCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEE
Q 001403 963 -------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAI 1028 (1084)
Q Consensus 963 -------~~~~~~h~~~v~~l~fs~-------dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1028 (1084)
..+...+...+..+.|-. +|.++++.-..+.|....+..+..+..... .. . .-..+++.+
T Consensus 238 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~---~~~~r~~~v 311 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE--FL-G---GFGGRPRDV 311 (331)
T ss_dssp S-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE--EC-T---TSSS-EEEE
T ss_pred CCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE--cc-c---cCCCCceEE
Confidence 001112345677777753 456777666667788888775533222220 11 1 112246788
Q ss_pred EECCCCCCEEEEEeCCCcEE
Q 001403 1029 AAHPLKPTQFAVGLTNGEVY 1048 (1084)
Q Consensus 1029 ~~~p~d~~~l~~~~~dg~v~ 1048 (1084)
++.| ||.+.++.+.+|.|+
T Consensus 312 ~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 312 AQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EEET-TSEEEEEE-TTTTEE
T ss_pred EEcC-CCeEEEEECCCCeEe
Confidence 9999 688988888899875
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.19 Score=59.06 Aligned_cols=234 Identities=11% Similarity=0.016 Sum_probs=124.7
Q ss_pred CCCEEEEEeCC------CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC------CcEEEEECCC
Q 001403 399 DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVT 466 (1084)
Q Consensus 399 dg~~las~~~d------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d------~~i~vwd~~~ 466 (1084)
.+..++.|+.+ ..+..+|..+++-.. ...+. +...-.+++... +. +.++||.| .++..||..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 35566666655 357888888764221 11222 222233445543 44 67788888 3577888887
Q ss_pred Cceee--EeccCCCcEEEEeecccCCCcEEEEEecCCe-----EEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEE
Q 001403 467 GSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDGK-----IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 539 (1084)
Q Consensus 467 g~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 539 (1084)
++-.. .+...........+ +|.+.+.|+.||. +..||..+.+-...-......-..-...-+|...++|
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred CceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence 66332 22212222222222 5678888998875 6677766544333222222222222233467777777
Q ss_pred eeCCCCC--eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCc-----EEEEECCCCeEEEEEcCCC
Q 001403 540 GTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-----IKIWDMNKVQLLTTIDAGG 612 (1084)
Q Consensus 540 ~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~ 612 (1084)
|.++..+ ..+..||..+++....-.-.. ...... ++ .-++...++||.|+. |..||..+.+....-....
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCccc-ccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 7554432 578899998876543322221 001222 22 235667777877663 7788988877665532222
Q ss_pred CCCCcceEEEecCCCEEEEEECCC-----eEEEEEcCCC
Q 001403 613 GLPENPRICFNKNGTLLAVIANEN-----RIKILETPES 646 (1084)
Q Consensus 613 ~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~ 646 (1084)
....+.. ..-++...++|+.|| +|..||..+.
T Consensus 512 ~rs~~g~--~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 512 PRSAVGV--VVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccccE--EEECCEEEEEecccCccccceeEEcCCCCC
Confidence 2111111 222577778887765 4666666655
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.041 Score=59.88 Aligned_cols=145 Identities=8% Similarity=0.086 Sum_probs=102.3
Q ss_pred EEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCE-------EEEEeCCCcEEEEeCCCCceeeeeeeecCC
Q 001403 850 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI-------LVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 922 (1084)
Q Consensus 850 ~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~-------l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~ 922 (1084)
+|.++.....++--|++.|+.+.++.-|.+ |+-+.+.|+.+. -+.|=.|..|.-||..-..... +....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k---l~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK---LAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce---eeeee
Confidence 444555566789999999999999987776 888888887532 2235567889999987432211 11112
Q ss_pred CCccC-CCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001403 923 GVMTL-APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 923 ~~~~~-~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~ 1000 (1084)
++.-. .....|.+-..+|..++.+.+|.|++||- .+....+.+++-..+|..|..+.||++|+..+ +..+.+-++.
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 22110 12355666667777666689999999997 67777777888899999999999999988654 6677776654
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.13 Score=60.67 Aligned_cols=201 Identities=7% Similarity=-0.037 Sum_probs=100.5
Q ss_pred CCCcEEEEEEeCC------CcEEEEECCCCcee--eEeccCCCcEEEEeecccCCCcEEEEEecCC-----eEEEEECCC
Q 001403 444 PCKQISVITCGDD------KTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDS 510 (1084)
Q Consensus 444 d~~~l~l~s~~~d------~~i~vwd~~~g~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~ 510 (1084)
++. +.+.||.+ ..+..||..+..-. ..+.........+.+ ++.+.+.|+.++ .+..||..+
T Consensus 303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC
Confidence 455 56666643 34778888776432 111111111122222 456777777654 477888775
Q ss_pred CCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCC-------------------CeeEEEecCCCceEeeeeeccccccC
Q 001403 511 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-------------------ESFLVEWNESEGAIKRTYQGLQLQHN 571 (1084)
Q Consensus 511 ~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~-------------------~~~i~~wd~~~~~~~~~~~~~~~~~~ 571 (1084)
..=...-..+.......+..-+|+..+.||.++.. ...+..||..+.+-...-.-.. .
T Consensus 377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~---~ 453 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT---G 453 (557)
T ss_pred CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc---c
Confidence 43222111111111111122366766666643210 2458889988765532222111 1
Q ss_pred ceEEEEEcCCCCEEEEEECC------CcEEEEECCC-CeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCC--eEEEEE
Q 001403 572 SVSVVHFDTAKDQILAAGDD------HVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--RIKILE 642 (1084)
Q Consensus 572 ~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--~i~iwd 642 (1084)
........-+++..+.|+.+ ..+..||..+ .+................+++ +++..++|+.++ .+..||
T Consensus 454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcC
Confidence 11111122345666667654 2467899887 555443333222212222222 688899998887 777888
Q ss_pred cCCCCeeeecccc
Q 001403 643 TPESNSVDAAGVL 655 (1084)
Q Consensus 643 ~~~~~~~~~~~~~ 655 (1084)
..+.+-......|
T Consensus 532 ~~~~~W~~~~~~~ 544 (557)
T PHA02713 532 VYTYEWNHICHQH 544 (557)
T ss_pred cccccccchhhhc
Confidence 8777554433333
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.012 Score=65.20 Aligned_cols=92 Identities=15% Similarity=0.282 Sum_probs=77.0
Q ss_pred CCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeE-EEEEcCCCCcEEEEEeCCCeEEEEEcCCceee
Q 001403 794 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTAT-SLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 871 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~-~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~ 871 (1084)
...+.-+.|+|.-..+|.+. +|.+.+..+. .+.+.++.-|...++ +++|.| ||++||+|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 44677889999999999997 6889999988 888889887777777 999999 8999999999999999999998776
Q ss_pred eee-cccccCEEEEEEc
Q 001403 872 SKL-EGHSKRVTGLVFS 887 (1084)
Q Consensus 872 ~~l-~~h~~~V~~l~~s 887 (1084)
... ..-...|.++.|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 552 2244567777776
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.44 Score=51.84 Aligned_cols=237 Identities=11% Similarity=0.084 Sum_probs=109.5
Q ss_pred CCCeEEEee-cCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--
Q 001403 737 GGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-- 813 (1084)
Q Consensus 737 ~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-- 813 (1084)
+.++|++.+ ..+.|.|.|+..... .+++..+.....+... ..-.....+-.-|+|+.++++-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr----------~P~l~KvIe~~ev~~k-----~g~s~PHT~Hclp~G~imIS~lGd 150 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPR----------KPRLHKVIEPEEVFEK-----TGLSRPHTVHCLPDGRIMISALGD 150 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TT----------S-EEEEEE-HHHHHHH-----H-EEEEEEEEE-SS--EEEEEEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCC----------CCceEeeeCHHHHHhh-----cCCCCCceeeecCCccEEEEeccC
Confidence 456677766 468899988764432 1222221111111110 0111222344567898888762
Q ss_pred -----CCeEEEEEcCCceeEEEEcCCC---CCeEEEEEcCCCCcEEEEEe--------------------CCCeEEEEEc
Q 001403 814 -----GGVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGM--------------------DDSTILIYNA 865 (1084)
Q Consensus 814 -----dg~i~vwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~la~g~--------------------~dg~i~iwd~ 865 (1084)
.|.+.+.|-++.+......... ..-..+-+.| ..+.+++.. ...++.+||+
T Consensus 151 ~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~ 229 (461)
T PF05694_consen 151 ADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDW 229 (461)
T ss_dssp TTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEET
T ss_pred CCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEEC
Confidence 1568999999888887765432 2345667777 666666643 2358999999
Q ss_pred CCceeeeeecccc--cCEEEEEEcCC--CCEEEEE-eCCCcEE-EEeCCCCceeeeeeeecCCCC-------------cc
Q 001403 866 RSSEVISKLEGHS--KRVTGLVFSDA--LNILVSS-GGDAQIF-VWDVDGWGIQTCRSLQTPDGV-------------MT 926 (1084)
Q Consensus 866 ~~~~~~~~l~~h~--~~V~~l~~spd--~~~l~s~-s~dg~I~-iwd~~~~~~~~~~~~~~~~~~-------------~~ 926 (1084)
.+.+.++++.--. ..+..+.|.+| ..+=.++ .-..+|. +|.-+.++-...+++...... ..
T Consensus 230 ~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~ 309 (461)
T PF05694_consen 230 STRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGA 309 (461)
T ss_dssp TTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-E
T ss_pred CCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccccccc
Confidence 9999998886322 23556777654 3433332 2333444 344355554444454443221 01
Q ss_pred CCCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcce---eeEeecC-------C--------CCCEEEEEEccCCCEEE
Q 001403 927 LAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC---LKQWFPI-------S--------SVPISQATFSCDCRMVF 986 (1084)
Q Consensus 927 ~~~~v~~~~~s~dg~~la~~--~d~~i~vwd~~~~~~---~~~~~~~-------h--------~~~v~~l~fs~dg~~l~ 986 (1084)
...-|+.+..|.|.++|.++ ..|.|+.||+..... ..+...+ | .+...-+..|-||+.|.
T Consensus 310 ~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY 389 (461)
T PF05694_consen 310 VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY 389 (461)
T ss_dssp E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence 12358999999999999996 789999999986443 2222211 0 22346788999999988
Q ss_pred EEe
Q 001403 987 TSF 989 (1084)
Q Consensus 987 t~~ 989 (1084)
..+
T Consensus 390 vTn 392 (461)
T PF05694_consen 390 VTN 392 (461)
T ss_dssp EE-
T ss_pred EEe
Confidence 764
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.041 Score=65.08 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=78.8
Q ss_pred CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001403 399 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 478 (1084)
Q Consensus 399 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~ 478 (1084)
-+..++.|++.|.|...|+.+. +++...-..-.++|++++|+.||+ +++.|-.+|.|.+||+.+++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 3567899999999999888764 222222223457999999999999 788898999999999999999999988888
Q ss_pred cEEEEeecc-cCCCcEEEEEecCCeEEEEEC
Q 001403 479 PVYSLCPHA-KENIHFIFSISVDGKIKAWLY 508 (1084)
Q Consensus 479 ~v~~~~~~~-~~~~~~l~s~s~dg~i~iwd~ 508 (1084)
+..++-+.. .+++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 877765432 234456888877776 4543
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.19 Score=59.28 Aligned_cols=196 Identities=9% Similarity=-0.018 Sum_probs=103.8
Q ss_pred CCcEEEEEeCC------CeEEEEEcCCce--eeeeecccccCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCcee
Q 001403 847 DNNVIAIGMDD------STILIYNARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQ 913 (1084)
Q Consensus 847 d~~~la~g~~d------g~i~iwd~~~~~--~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg-----~I~iwd~~~~~~~ 913 (1084)
++.+.++|+.+ ..+..||..+.+ .+..+.........+ .-+|++.+.||.++ ++..||..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 56788888754 357888887653 222222111122222 23678888888764 4788998875432
Q ss_pred eeeeeecCCCCccCCCCceEEEEccCCCEEEEEe-C-----------------------CeEEEEEcCCcceeeEeecCC
Q 001403 914 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-E-----------------------THLAIYEAEELTCLKQWFPIS 969 (1084)
Q Consensus 914 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-d-----------------------~~i~vwd~~~~~~~~~~~~~h 969 (1084)
....+..... .... ..-+|++.++|+ + ..+..||..+.+-...... .
T Consensus 381 ~~~~mp~~r~------~~~~--~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m-~ 451 (557)
T PHA02713 381 MLPDMPIALS------SYGM--CVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF-W 451 (557)
T ss_pred ECCCCCcccc------cccE--EEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC-C
Confidence 2222111111 1111 233677666652 2 2477788876543221111 1
Q ss_pred CCCEEEEEEccCCCEEEEEeCC------CcEEEEEcCC-CceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEe
Q 001403 970 SVPISQATFSCDCRMVFTSFVD------GTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1042 (1084)
Q Consensus 970 ~~~v~~l~fs~dg~~l~t~~~d------g~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~ 1042 (1084)
......-+..-+|+..+.|+.+ ..+..||..+ .+....- .++.. .....++.. +|...++|+
T Consensus 452 ~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~----~m~~~-----r~~~~~~~~--~~~iyv~Gg 520 (557)
T PHA02713 452 TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT----TTESR-----LSALHTILH--DNTIMMLHC 520 (557)
T ss_pred cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc----ccCcc-----cccceeEEE--CCEEEEEee
Confidence 1122222234467777777654 2467888887 5554211 11111 111222333 478999999
Q ss_pred CCC--cEEEEcCCCCCCCcccCCCCC
Q 001403 1043 TNG--EVYVIEPNEPGDTWAVLPPDE 1066 (1084)
Q Consensus 1043 ~dg--~v~vw~~~~~~~~~~~~~~~~ 1066 (1084)
.|| .+..+|+ ...+|....|.-
T Consensus 521 ~~~~~~~e~yd~--~~~~W~~~~~~~ 544 (557)
T PHA02713 521 YESYMLQDTFNV--YTYEWNHICHQH 544 (557)
T ss_pred ecceeehhhcCc--ccccccchhhhc
Confidence 999 6777777 445588776654
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.095 Score=62.37 Aligned_cols=145 Identities=12% Similarity=0.115 Sum_probs=97.7
Q ss_pred CcEEEEEEeCCCcEEEEECCCCceeeEeccCCCc-EEEEeeccc---CCCcEEEEEecCCeEEEEECCCCCceEee-c--
Q 001403 446 KQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP-VYSLCPHAK---ENIHFIFSISVDGKIKAWLYDSLGARVDY-D-- 518 (1084)
Q Consensus 446 ~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~-v~~~~~~~~---~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~-- 518 (1084)
+.++|........+.-.|+++|+.+..+..|... |..++-... -+..-.+.|-.+..+..||.+........ .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3434555556788999999999999999888754 666653210 01234567777888999999875432211 1
Q ss_pred --CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEE
Q 001403 519 --APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 596 (1084)
Q Consensus 519 --~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 596 (1084)
.......|++-+.+|. ||+|+. +|.|++||-...+....+++.. .+|..+..+.||+++++.+. ..+.+
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~-iavgs~----~G~IRLyd~~g~~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~-tyLlL 643 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGY-IAVGSN----KGDIRLYDRLGKRAKTALPGLG---DPIIGIDVTADGKWILATCK-TYLLL 643 (794)
T ss_pred ccccCCCceEEEecCCce-EEEEeC----CCcEEeecccchhhhhcCCCCC---CCeeEEEecCCCcEEEEeec-ceEEE
Confidence 2334677888777775 555554 5559999955444444555555 89999999999999988764 55666
Q ss_pred EEC
Q 001403 597 WDM 599 (1084)
Q Consensus 597 wd~ 599 (1084)
++.
T Consensus 644 i~t 646 (794)
T PF08553_consen 644 IDT 646 (794)
T ss_pred EEE
Confidence 664
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.30 E-value=1.9 Score=45.75 Aligned_cols=277 Identities=9% Similarity=0.066 Sum_probs=123.7
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCC---CCCeEEEEEcCCCCEEEEEeCCCEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP---GVSVNRVVWSPDGSLLGVAYSKHIV 412 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h---~~~V~~v~fspdg~~las~~~dg~v 412 (1084)
.+..|+|..+..-.|+|.. + .|+....+...-+....... .-...+|.|..+ ..+++ +..+ +
T Consensus 18 ~l~dV~F~d~~~G~~VG~~----------g--~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g-~ 82 (302)
T PF14870_consen 18 PLLDVAFVDPNHGWAVGAY----------G--TILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPG-L 82 (302)
T ss_dssp -EEEEEESSSS-EEEEETT----------T--EEEEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETT-E
T ss_pred ceEEEEEecCCEEEEEecC----------C--EEEEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCc-e
Confidence 7888999977777777632 2 34444444333222111111 124667778653 34444 4455 5
Q ss_pred EEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce-eeEeccCCCcEEEEeecccCCC
Q 001403 413 QLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPHAKENI 491 (1084)
Q Consensus 413 ~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~-~~~~~~h~~~v~~~~~~~~~~~ 491 (1084)
.+.-.+.|+.-..+..-..-.+....+....++. .++. +..|.|..= .+.|+. ......-.+.+..+.. .+||
T Consensus 83 ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~--~~l~-~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r--~~dG 156 (302)
T PF14870_consen 83 LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS--AELA-GDRGAIYRT-TDGGKTWQAVVSETSGSINDITR--SSDG 156 (302)
T ss_dssp EEEESSTTSS-EE----TT-SS-EEEEEEEETTE--EEEE-ETT--EEEE-SSTTSSEEEEE-S----EEEEEE---TTS
T ss_pred EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc--EEEE-cCCCcEEEe-CCCCCCeeEcccCCcceeEeEEE--CCCC
Confidence 5556666655443211011222333444444443 3333 334543332 233332 2223334456666655 5677
Q ss_pred cEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEec-CCCceEeee-eeccccc
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN-ESEGAIKRT-YQGLQLQ 569 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd-~~~~~~~~~-~~~~~~~ 569 (1084)
.++++++.-..+.-||.-...-..........+.+|.|+|++...+.+. .+.|+.=+ ....+.-.. +......
T Consensus 157 ~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~-----Gg~~~~s~~~~~~~~w~~~~~~~~~~ 231 (302)
T PF14870_consen 157 RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLAR-----GGQIQFSDDPDDGETWSEPIIPIKTN 231 (302)
T ss_dssp -EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEET-----TTEEEEEE-TTEEEEE---B-TTSS-
T ss_pred cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeC-----CcEEEEccCCCCccccccccCCcccC
Confidence 7777776666667776443222333334557899999999988866552 33466555 222222111 1111112
Q ss_pred cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC-CCCCCcceEEEecCCCEEEEEECCCeEEEE
Q 001403 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIANENRIKIL 641 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 641 (1084)
...+..++|.+++...++|+ .|.+ +...+.|+.-+..... .-....+.+.|.++.+-++. +.+|.|.-|
T Consensus 232 ~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 232 GYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp -S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred ceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 24578899998876666554 5544 3455566655554432 22234778888876555555 466776554
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.012 Score=39.99 Aligned_cols=39 Identities=31% Similarity=0.443 Sum_probs=33.4
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 001403 825 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN 864 (1084)
Q Consensus 825 ~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd 864 (1084)
++....+..|...|.++.|.+ ++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 345566777888999999999 778999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.21 Score=43.23 Aligned_cols=101 Identities=16% Similarity=0.158 Sum_probs=65.9
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEc
Q 001403 881 VTGLVFSD---AL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 956 (1084)
Q Consensus 881 V~~l~~sp---d~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~ 956 (1084)
|++|++.. || +.|+.||.|..|++|+=+. .+...... ..|++++-...+++...-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~----~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IVAEITET----DKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EEEEEecc----cceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 67777764 22 6799999999999998775 22222222 2588888888877666668999999975
Q ss_pred CCcceeeEeecCCCCCEEEEEEcc---CC-CEEEEEeCCCcEEE
Q 001403 957 EELTCLKQWFPISSVPISQATFSC---DC-RMVFTSFVDGTLSI 996 (1084)
Q Consensus 957 ~~~~~~~~~~~~h~~~v~~l~fs~---dg-~~l~t~~~dg~i~v 996 (1084)
. ..+..... ...+.++++.. || .-|++|-.+|.|-+
T Consensus 71 ~--~RlWRiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 71 S--QRLWRIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred c--ceeeeecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2 33333222 33466666543 33 35888888887753
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.34 Score=41.93 Aligned_cols=102 Identities=17% Similarity=0.176 Sum_probs=65.9
Q ss_pred eEEEEEcC-CC---CEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 391 VNRVVWSP-DG---SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 391 V~~v~fsp-dg---~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
|+++++.. || +.|++|+.|..|+||+-+. .+. ++. -.+.|++++-...++ ++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~---Ei~-e~~~v~~L~~~~~~~---F~Y~l~NGTVGvY~~-- 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVA---EIT-ETDKVTSLCSLGGGR---FAYALANGTVGVYDR-- 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEE---EEe-cccceEEEEEcCCCE---EEEEecCCEEEEEeC--
Confidence 56666655 33 5899999999999998553 222 333 345688888777754 788888999999973
Q ss_pred CceeeEeccCCCcEEEEe-ecccCCC-cEEEEEecCCeEE
Q 001403 467 GSRTYSFEGHGAPVYSLC-PHAKENI-HFIFSISVDGKIK 504 (1084)
Q Consensus 467 g~~~~~~~~h~~~v~~~~-~~~~~~~-~~l~s~s~dg~i~ 504 (1084)
...+...+.-.. +.+++ +..+.|| .-|++|=.+|.|-
T Consensus 71 ~~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 333444443333 44554 4334333 3577887777764
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.18 E-value=2.1 Score=47.72 Aligned_cols=285 Identities=11% Similarity=0.089 Sum_probs=149.0
Q ss_pred CCEEEEEECCCcEEEEECCCCe-----EEEEEcCCCCCCCcceEEEe---c--CCCEEEEEECCCeEEEEEcCCC--C--
Q 001403 582 KDQILAAGDDHVIKIWDMNKVQ-----LLTTIDAGGGLPENPRICFN---K--NGTLLAVIANENRIKILETPES--N-- 647 (1084)
Q Consensus 582 ~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~v~~s---~--~~~~l~~~~~dg~i~iwd~~~~--~-- 647 (1084)
...+++|+..|.++||+...+. .+-..+.. .+|..+... + +...||+- .-..+.+|.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~---~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLK---DPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecC---CcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCCCcc
Confidence 4689999999999999986533 22222222 234444433 2 33355553 4567888877321 1
Q ss_pred -----eeeeccccccc--eeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeecc
Q 001403 648 -----SVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 720 (1084)
Q Consensus 648 -----~~~~~~~~~~~--i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~ 720 (1084)
.+..+..|.-. ...+...|.+. ......+..-+.||.+.+++-+... ....+
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg-----------------~~~~~~IcVQS~DG~L~~feqe~~~----f~~~l 171 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGG-----------------VKGRDFICVQSMDGSLSFFEQESFA----FSRFL 171 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCC-----------------CCCceEEEEEecCceEEEEeCCcEE----EEEEc
Confidence 11111112111 11111111111 1225667788899999999865321 12222
Q ss_pred CCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCccc----------ceecCCeeecCCCCCccccccCcC
Q 001403 721 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA----------TTKVPPRLYQPRHGPQFMVNDTTD 790 (1084)
Q Consensus 721 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1084)
+.. --...+.|.+....+++++++..+..|++..-.....+.. ....-..-|...-|+...
T Consensus 172 p~~---llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l------ 242 (418)
T PF14727_consen 172 PDF---LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQAL------ 242 (418)
T ss_pred CCC---CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeE------
Confidence 221 1223568888889999999999999998753211111110 111122335544444222
Q ss_pred CCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEE------cCCCCcEEEEEeCCCeEEEEE
Q 001403 791 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAF------NPHDNNVIAIGMDDSTILIYN 864 (1084)
Q Consensus 791 ~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~------s~~d~~~la~g~~dg~i~iwd 864 (1084)
.+..+.++.....+++-+..++.+.+. +|......+-...+.....| .+..+..+++++.++++.||.
T Consensus 243 -----~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 243 -----DIQVVRFSSSESDIVVLGERSLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred -----EEEEEEcCCCCceEEEEecceEEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence 233344444555666666777777765 34443332221112211111 121123588899999999995
Q ss_pred cCCceeeeeecccccCEEEEEE---cCCCCEEEEEeCCCcEEEEeCCC
Q 001403 865 ARSSEVISKLEGHSKRVTGLVF---SDALNILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 865 ~~~~~~~~~l~~h~~~V~~l~~---spd~~~l~s~s~dg~I~iwd~~~ 909 (1084)
..+++...+....+| ++.. ..-...|++-+.+|.+.+-=+.+
T Consensus 317 --d~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 317 --DTTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred --CCeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 345555444333333 3333 23356788888999998877766
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.24 Score=48.24 Aligned_cols=156 Identities=12% Similarity=0.081 Sum_probs=91.9
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE-eCCCEEEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQL 414 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~-~~dg~v~i 414 (1084)
....-..+|+|+|.+-...|....-....+.++.|-..-...... +.-.--..++|+.|.+.+... +.+-+|.-
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~-----~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIW-----NCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeee-----hhccCCccccccccCcEEEEEccCceEEee
Confidence 334445789999966544442111111235666665543222211 112233468899888877766 45667877
Q ss_pred EE--ccCCccccce--eeeec-----ccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEee
Q 001403 415 YA--YHGGSDARQQ--LEIDA-----HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 485 (1084)
Q Consensus 415 wd--~~~~~~~~~~--~~l~~-----h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~ 485 (1084)
|| ..+|....+. ..++. |. .--.++...+|. +.+++-..++|...|..+|+.+.++.-....|+++||
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~-~PDGm~ID~eG~--L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESL-EPDGMTIDTEGN--LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCC-CCCcceEccCCc--EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 88 5666543221 11111 11 112344555676 6677777889999999999999999988999999999
Q ss_pred cccCCCcEEEEEec
Q 001403 486 HAKENIHFIFSISV 499 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~ 499 (1084)
-..+-.-+.+|+..
T Consensus 262 gGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 262 GGKNLDILYVTTAA 275 (310)
T ss_pred cCCCccEEEEEehh
Confidence 54322234444443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=1.6 Score=44.72 Aligned_cols=204 Identities=16% Similarity=0.228 Sum_probs=123.4
Q ss_pred cccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEec
Q 001403 724 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 803 (1084)
Q Consensus 724 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 803 (1084)
+....+.+++|+|+.+.|++........|+= ...|..+....+.+ -.....+++.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVEl----------------------t~~GdlirtiPL~g---~~DpE~Ieyi 137 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVEL----------------------TKEGDLIRTIPLTG---FSDPETIEYI 137 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEE----------------------ecCCceEEEecccc---cCChhHeEEe
Confidence 3445599999999999999998876655542 23344455555544 3445667888
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCceeEEE-------Ec---CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce---
Q 001403 804 KNDAYLFSAS-GGVISLYIVMTFKTILT-------IM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--- 869 (1084)
Q Consensus 804 ~dg~~l~~~s-dg~i~vwd~~~~~~~~~-------~~---~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~--- 869 (1084)
.+|+++++-. +..+.++.+........ +. ......-.+||+| .++.|..+-+-.-+.||....+.
T Consensus 138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l 216 (316)
T COG3204 138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSL 216 (316)
T ss_pred cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccc
Confidence 8888777665 67788777765432221 11 1134567899999 56666667777767777665322
Q ss_pred eeeeeccc-------ccCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCC
Q 001403 870 VISKLEGH-------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 941 (1084)
Q Consensus 870 ~~~~l~~h-------~~~V~~l~~sp-d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 941 (1084)
.+.....+ -..|.++.|.+ .+.+|+-+.+++.+.-.|....-...........|-...-.....++..++|.
T Consensus 217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~ 296 (316)
T COG3204 217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN 296 (316)
T ss_pred ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence 11111122 23466778875 56777777788888888877643222222233333322223456778888887
Q ss_pred EEEEEeCCeEEE
Q 001403 942 RFLLVHETHLAI 953 (1084)
Q Consensus 942 ~la~~~d~~i~v 953 (1084)
+-+++..+-.+.
T Consensus 297 lYIvSEPnlfy~ 308 (316)
T COG3204 297 LYIVSEPNLFYR 308 (316)
T ss_pred EEEEecCCccee
Confidence 766665544433
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.58 Score=52.34 Aligned_cols=161 Identities=14% Similarity=0.111 Sum_probs=91.8
Q ss_pred CCeEEEEEcCCCCcEEEEEe--CCCeEEEEEcCCceeeeeecccccCEEEEEEcCC----CCEEEEEeCCCcEEEEeCCC
Q 001403 836 PTATSLAFNPHDNNVIAIGM--DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 836 ~~i~~l~~s~~d~~~la~g~--~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd----~~~l~s~s~dg~I~iwd~~~ 909 (1084)
.++..++|.. +.+.+.+.- .+|.+++=| .+.+..|+ .|.+++|+|- -..|...-.-..|.||-+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 3577888885 445555443 334443322 23344443 4889999984 33444455678899999873
Q ss_pred Cceeeeeee--ecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEE
Q 001403 910 WGIQTCRSL--QTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 986 (1084)
Q Consensus 910 ~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 986 (1084)
......+.+ ++.+-.....--...+.|+|....|++ .....=.++++.........-....+.|.|.||..||+.|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 222222111 111111111112357889999999998 44444445565533322221223478999999999999887
Q ss_pred EEeC-CCcEEEEEcCCCce
Q 001403 987 TSFV-DGTLSIHEASNLEV 1004 (1084)
Q Consensus 987 t~~~-dg~i~vwd~~~~~~ 1004 (1084)
++-. .=.-++||-....+
T Consensus 172 VAvGSsLHSyiWd~~qKtL 190 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQKTL 190 (671)
T ss_pred EEeCCeEEEEEecCchhhh
Confidence 6643 33467898665543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.84 E-value=1.7 Score=44.52 Aligned_cols=193 Identities=13% Similarity=0.177 Sum_probs=113.3
Q ss_pred eecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccC-CCcEEEEeecccCCCcEEEEEecCCeEEEEE
Q 001403 429 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLCPHAKENIHFIFSISVDGKIKAWL 507 (1084)
Q Consensus 429 l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd 507 (1084)
+.+-...|.++.|+|+.+ .|++......-.||=-..|..+.++.-. -.....+.+ -++++++++--.++.+.++.
T Consensus 81 i~g~~~nvS~LTynp~~r--tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Iey--ig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 81 ILGETANVSSLTYNPDTR--TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEY--IGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccccccceeeCCCcc--eEEEecCCCceEEEEecCCceEEEecccccCChhHeEE--ecCCEEEEEehhcceEEEEE
Confidence 345556699999999999 5666666667777766889998877421 112233444 34667888888888888887
Q ss_pred CCCCCceEee----------cCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE-eeeeecccc----ccCc
Q 001403 508 YDSLGARVDY----------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQGLQL----QHNS 572 (1084)
Q Consensus 508 ~~~~~~~~~~----------~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~----~~~~ 572 (1084)
++........ ...+.....++|.|....+..+-.-. -..|+.|+...... ......+.. .-..
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~--P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D 234 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN--PIGIFEVTQSPSSLSVHASLDPTADRDLFVLD 234 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC--CcEEEEEecCCcccccccccCcccccceEeec
Confidence 7765433221 11245788999999999988875421 22344444221111 111111110 0145
Q ss_pred eEEEEEcCCCCEEEE-EECCCcEEEEECCCCeEEEEEcCCCC-------CCCcceEEEecCCCE
Q 001403 573 VSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGG-------LPENPRICFNKNGTL 628 (1084)
Q Consensus 573 v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~~ 628 (1084)
+.++.|++..+.+++ +.+++.+.-.|.. |..+..+....+ .+....++..++|.+
T Consensus 235 vSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l 297 (316)
T COG3204 235 VSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL 297 (316)
T ss_pred cccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence 778888876655555 5577777777765 444544433322 122335566655543
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.81 E-value=1.2 Score=48.70 Aligned_cols=235 Identities=11% Similarity=0.038 Sum_probs=105.1
Q ss_pred CCcEEEEEe-cCCeEEEEECCCCCc----eEeecC---C----CCeEEEEEEcCCCCEEEEEeeC--CCCCeeEEEecCC
Q 001403 490 NIHFIFSIS-VDGKIKAWLYDSLGA----RVDYDA---P----GLGCTRMAYSANGRRLFSCGTS--KEGESFLVEWNES 555 (1084)
Q Consensus 490 ~~~~l~s~s-~dg~i~iwd~~~~~~----~~~~~~---~----~~~i~~~~~s~d~~~l~~~~~~--~~~~~~i~~wd~~ 555 (1084)
+.++|+..+ ..++|.+.|+.+... ...++. . -.....+..-|+|+.++++-.+ +++.+-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666666 667899999874322 222221 0 0123345556899988876543 4556678999998
Q ss_pred CceEeeeeeccccccCceEEEEEcCCCCEEEEEE--------------------CCCcEEEEECCCCeEEEEEcCCCCCC
Q 001403 556 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--------------------DDHVIKIWDMNKVQLLTTIDAGGGLP 615 (1084)
Q Consensus 556 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 615 (1084)
+.+.............--..+.+.|..+.+++.. ...++.+||+.+.+.++++.......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 8888877765441123345677888888888864 23579999999999999998764322
Q ss_pred CcceEEEec--CCCEEEEEE-CCCeEEEEEc-CCCCe----eeecccc-----------------ccceeEEEEcCCCce
Q 001403 616 ENPRICFNK--NGTLLAVIA-NENRIKILET-PESNS----VDAAGVL-----------------SDNLRKLSVNPISTV 670 (1084)
Q Consensus 616 ~v~~v~~s~--~~~~l~~~~-~dg~i~iwd~-~~~~~----~~~~~~~-----------------~~~i~~~~~~p~~~~ 670 (1084)
....+.|.. +..+-+++. -..+|..|-- ..++- +-.+... ..-++.+.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS----- 320 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS----- 320 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE------
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc-----
Confidence 244566654 444433332 2344544433 33311 1111100 1123333333
Q ss_pred eeeeccCceeEecCCCCCCCCc-cceecccCccccccceeecCcc-ceeeccCC------------ccccceEEEEEEec
Q 001403 671 TGAGIANGSVSVNEDPKEDVKP-EISVEAENKSEVEKPLFARPSE-CQSLLLPS------------KVKANKISRLTYNN 736 (1084)
Q Consensus 671 ~~~~~~~~~~~~~~~~s~~~~~-l~~~~~d~~i~~w~~~~~~~~~-~~~~~~~~------------~~~~~~i~~l~~s~ 736 (1084)
.|.++ .+++-.+|.++.||+.-..... .-.+.+-. ..-.+...-+..|-
T Consensus 321 -----------------lDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~ 383 (461)
T PF05694_consen 321 -----------------LDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSL 383 (461)
T ss_dssp -----------------TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-T
T ss_pred -----------------cCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEcc
Confidence 44444 4566778899999976432221 11111111 11123346788899
Q ss_pred CCCeEEEeec
Q 001403 737 GGQAIFALAS 746 (1084)
Q Consensus 737 ~g~~l~~~~~ 746 (1084)
||++|..+.+
T Consensus 384 DGkRlYvTnS 393 (461)
T PF05694_consen 384 DGKRLYVTNS 393 (461)
T ss_dssp TSSEEEEE--
T ss_pred CCeEEEEEee
Confidence 9998887765
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.92 Score=44.45 Aligned_cols=202 Identities=13% Similarity=0.108 Sum_probs=103.7
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCC---CEEEEEeCCCEEEEEEcc--CCccccceeeeec--ccccEe
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG---SLLGVAYSKHIVQLYAYH--GGSDARQQLEIDA--HVGNVN 437 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg---~~las~~~dg~v~iwd~~--~~~~~~~~~~l~~--h~~~V~ 437 (1084)
+.|.=||..+...... ...+. .+..+.|--.| .+.+.++..-.|.-||-. .....+.+.++.. ...+.+
T Consensus 37 g~v~r~D~~qn~v~ra--~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~N 112 (310)
T KOG4499|consen 37 GEVHRYDIEQNKVYRA--KIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLN 112 (310)
T ss_pred CceehhhhhhhheEEE--EEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHhcccc
Confidence 4455588876432221 12332 23344443333 233334444445667732 2222222111211 133566
Q ss_pred EEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCC--------CcEEEEeecccCCCcEEEEEecCCeEEEEECC
Q 001403 438 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG--------APVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509 (1084)
Q Consensus 438 ~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~--------~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 509 (1084)
.-..+|+|+ +.+-.-.|-.- +.....|....-+.+|. +--+.++|..+ .-.+.++-+.+-.|.-||.+
T Consensus 113 DgkvdP~Gr--yy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d-~K~fY~iDsln~~V~a~dyd 188 (310)
T KOG4499|consen 113 DGKVDPDGR--YYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSD-AKKFYYIDSLNYEVDAYDYD 188 (310)
T ss_pred cCccCCCCc--eeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCcccccccc-CcEEEEEccCceEEeeeecC
Confidence 667889999 43322122111 12212232222223332 22345667522 22455666777788888854
Q ss_pred C--CC-----ceEeecC----CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEE
Q 001403 510 S--LG-----ARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF 578 (1084)
Q Consensus 510 ~--~~-----~~~~~~~----~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~ 578 (1084)
- +. .++.++. .......+++..+|.+.+++-. .++|...|+.+|+.+..+.-.. ..+++++|
T Consensus 189 ~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt---~qitsccF 261 (310)
T KOG4499|consen 189 CPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPT---PQITSCCF 261 (310)
T ss_pred CCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCC---CceEEEEe
Confidence 2 22 2222222 1112335666778888777765 5679999999999999998877 88999999
Q ss_pred cCC
Q 001403 579 DTA 581 (1084)
Q Consensus 579 s~~ 581 (1084)
.-.
T Consensus 262 gGk 264 (310)
T KOG4499|consen 262 GGK 264 (310)
T ss_pred cCC
Confidence 643
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=4.3 Score=44.52 Aligned_cols=157 Identities=11% Similarity=0.027 Sum_probs=87.0
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcC
Q 001403 878 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 957 (1084)
Q Consensus 878 ~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~ 957 (1084)
.+.+.++.+.|++.+++++ ..|.+.. ..+.+. .....+.... ...+..+.+.++++.++++..|.+.+=...
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg-~tW~~~~~~~-----~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQ-TAWTPHQRNS-----SRRLQSMGFQPDGNLWMLARGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEE-EcCCCC-CeEEEeeCCC-----cccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence 4568899999998766554 5564432 211111 0111122111 126889999999999888888876543344
Q ss_pred CcceeeEeecC---CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCC
Q 001403 958 ELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1034 (1084)
Q Consensus 958 ~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1034 (1084)
.|+.-.....+ ....+.++.|.+++..++ ++.+|.|. ...+.|+--.........+ ...+ .+.|..
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~-----~~~~--~~~~~~-- 312 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVP-----SNFY--KIVFLD-- 312 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCC-----cceE--EEEEeC--
Confidence 44432221111 134578899999887655 45677665 4455544322211001111 1123 344553
Q ss_pred CCEEEEEeCCCcEEEEcCC
Q 001403 1035 PTQFAVGLTNGEVYVIEPN 1053 (1084)
Q Consensus 1035 ~~~l~~~~~dg~v~vw~~~ 1053 (1084)
++...+++..|.|..|+-.
T Consensus 313 ~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 313 PEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred CCceEEECCCceEEEecCC
Confidence 3566667789999888753
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.2 Score=54.83 Aligned_cols=144 Identities=10% Similarity=0.096 Sum_probs=95.3
Q ss_pred CcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEE-----EEEecCCeEEEEECCCCCc-eEee-c
Q 001403 446 KQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-----FSISVDGKIKAWLYDSLGA-RVDY-D 518 (1084)
Q Consensus 446 ~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l-----~s~s~dg~i~iwd~~~~~~-~~~~-~ 518 (1084)
..+++.++.....++--|+++|+.+.++.-|.. |.-+.+.+...+..+ +.|-.|..|.-||.+-... .... .
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 334667777777899999999999999988777 555555444433332 3456678888899875443 2111 1
Q ss_pred C----CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcE
Q 001403 519 A----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 594 (1084)
Q Consensus 519 ~----~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 594 (1084)
. ......|.+-..+| ++++++. +|-|++||.-..+....+++.. .+|..+..+.+|++|++.+. ..+
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~----~GdIRLYdri~~~AKTAlPgLG---~~I~hVdvtadGKwil~Tc~-tyL 494 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSL----KGDIRLYDRIGRRAKTALPGLG---DAIKHVDVTADGKWILATCK-TYL 494 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeec----CCcEEeehhhhhhhhhcccccC---CceeeEEeeccCcEEEEecc-cEE
Confidence 1 12245566655555 5666665 4449999974444455566666 89999999999999887764 455
Q ss_pred EEEEC
Q 001403 595 KIWDM 599 (1084)
Q Consensus 595 ~iwd~ 599 (1084)
.+.++
T Consensus 495 lLi~t 499 (644)
T KOG2395|consen 495 LLIDT 499 (644)
T ss_pred EEEEE
Confidence 55554
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.54 E-value=3.6 Score=50.03 Aligned_cols=204 Identities=13% Similarity=0.104 Sum_probs=119.6
Q ss_pred CCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCC--------eEEEEEcC---------------CCCcEEEEEeCCCeEE
Q 001403 805 NDAYLFSASGGVISLYIVMTFKTILTIMPPSPT--------ATSLAFNP---------------HDNNVIAIGMDDSTIL 861 (1084)
Q Consensus 805 dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~--------i~~l~~s~---------------~d~~~la~g~~dg~i~ 861 (1084)
++..+++..++.|.-.|..+|+.+.++...... ...+++-. .++..|+.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 444444444788999999999988877643211 11222211 0234778899999999
Q ss_pred EEEcCCceeeeeecccccCEE-------------EEEEcC--CCCEEEEEeC----------CCcEEEEeCCCCceeeee
Q 001403 862 IYNARSSEVISKLEGHSKRVT-------------GLVFSD--ALNILVSSGG----------DAQIFVWDVDGWGIQTCR 916 (1084)
Q Consensus 862 iwd~~~~~~~~~l~~h~~~V~-------------~l~~sp--d~~~l~s~s~----------dg~I~iwd~~~~~~~~~~ 916 (1084)
-.|.++|+.+..+.. .+.|. .+.-+| .+..++.++. +|.|+-+|+.+|+..-..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876642 22111 011111 1345555543 688999999998865432
Q ss_pred eeecCC-------CCcc--CCCCc-eEEEEccCCCEEEEE-------------------eCCeEEEEEcCCcceeeEeec
Q 001403 917 SLQTPD-------GVMT--LAPSE-THIQFHKDQTRFLLV-------------------HETHLAIYEAEELTCLKQWFP 967 (1084)
Q Consensus 917 ~~~~~~-------~~~~--~~~~v-~~~~~s~dg~~la~~-------------------~d~~i~vwd~~~~~~~~~~~~ 967 (1084)
-..... +..- ....+ ..+++.++..++..+ ..+.|.-.|.+||+....+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 211110 0000 00111 344555655554441 124577788899998877655
Q ss_pred CCC--------CCEEEEEEcc-CCC---EEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 968 ISS--------VPISQATFSC-DCR---MVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 968 ~h~--------~~v~~l~fs~-dg~---~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
.|. ....=+.+.. +|+ .++.++.+|.+.+.|-.+|+.+....
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 331 1111122333 664 79999999999999999999887643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.53 E-value=3.4 Score=42.44 Aligned_cols=195 Identities=12% Similarity=0.072 Sum_probs=112.6
Q ss_pred cceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCC
Q 001403 726 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 805 (1084)
Q Consensus 726 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 805 (1084)
..-...+.|..+|..+-+++.-|.=. ++.+|+.+|+......++. ..--..++...|
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~--------------------l~~~d~~tg~~~~~~~l~~---~~FgEGit~~~d 100 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSS--------------------LRKVDLETGKVLQSVPLPP---RYFGEGITILGD 100 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEE--------------------EEEEETTTSSEEEEEE-TT---T--EEEEEEETT
T ss_pred cccCccEEecCCCEEEEeCCCCCcEE--------------------EEEEECCCCcEEEEEECCc---cccceeEEEECC
Confidence 34566788888888777777765322 3445666666454544432 223344555555
Q ss_pred CCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccc-----cC
Q 001403 806 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-----KR 880 (1084)
Q Consensus 806 g~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~-----~~ 880 (1084)
.-+..+.-++...+||..+.+.+.++.-. +.=..++. |++.|+.......++++|..+-+....+.-.. ..
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~ 176 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSN 176 (264)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---
T ss_pred EEEEEEecCCeEEEEccccceEEEEEecC-CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCC
Confidence 55555666899999999999999888643 45566663 56667777777789999988876665554321 23
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCC-------CCccCCCCceEEEEccCCCEEEEEeC
Q 001403 881 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLVHE 948 (1084)
Q Consensus 881 V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~dg~~la~~~d 948 (1084)
++-|.+- +|...|-.=....|..-|..+|+.....-+..+. .......-...+|+.|....|.+...
T Consensus 177 LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 177 LNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred cEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 4556665 6666665555556777788887755432221111 11111234689999988877766433
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.24 Score=59.22 Aligned_cols=248 Identities=9% Similarity=0.041 Sum_probs=141.5
Q ss_pred CCCccEEEecCCCCEEEEEe--C-CeEEEEEcCCceeEE-----EEcC------CCCCeEEEEEcCCCCcEEEEEeCCCe
Q 001403 794 QEAVPCFALSKNDAYLFSAS--G-GVISLYIVMTFKTIL-----TIMP------PSPTATSLAFNPHDNNVIAIGMDDST 859 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~s--d-g~i~vwd~~~~~~~~-----~~~~------~~~~i~~l~~s~~d~~~la~g~~dg~ 859 (1084)
.-.+..+...+|+...++.. + -.|..||+.+...-. .+.. ......++.|.|.--...|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 44566777888877666554 3 368999987543221 1221 22345677888843445667778999
Q ss_pred EEEEEcCCce-eeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEcc
Q 001403 860 ILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 938 (1084)
Q Consensus 860 i~iwd~~~~~-~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 938 (1084)
|++..+.-.. .+..+. -...+++++|+|-|+.++.|-..|++.-|...-..... +..+.... ...|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~---ip~Pp~~e--~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE---IPEPPVEE--NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeec---ccCCCcCC--CcceeEEEEec
Confidence 9988765432 222222 45668999999999999999999999988776532222 22221111 23788999988
Q ss_pred CCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCC
Q 001403 939 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1018 (1084)
Q Consensus 939 dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1018 (1084)
...++++-... ++. ...+...+++.+ .-.-||.+.+-..-.+... + ..++..+
T Consensus 254 t~eflvvy~n~--------ts~--------~~dpd~y~~~~~------k~kp~g~~nF~E~~d~tpp--f---g~~~rq~ 306 (1405)
T KOG3630|consen 254 TQEFLVVYGNV--------TSE--------TDDPDSYDQKMY------KIKPDGSANFQETFDITPP--F---GQIVRQP 306 (1405)
T ss_pred ceeEEEEeccc--------ccC--------cCCchhhhhccc------cccCcceeeeccccCCCCC--c---cccCccc
Confidence 88877762111 110 011111111111 1113444443333222221 0 0011111
Q ss_pred cccceeeeEEEECCCCCCEEEEEeCC-CcEEEEcCCCCCCCcccCCCCCcccCCCCCCcccc
Q 001403 1019 SCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGD 1079 (1084)
Q Consensus 1019 ~~~~v~~~~~~~~p~d~~~l~~~~~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (1084)
|-. ...-..|.|+|.+.+++|... ..|-||.. . ..|....+.|...+..+.+.++|
T Consensus 307 h~y--~~~L~~W~~~~~~vVvvansaSsEvsila~-~--~qW~~w~~vde~ra~LP~s~k~d 363 (1405)
T KOG3630|consen 307 HMY--KVTLSGWIEPDANVVVVANSASSEVSILAS-M--KQWIEWSQVDEKRAVLPISEKTD 363 (1405)
T ss_pred hhH--HHhhhhhcccccceEEEecccccchhhhhh-h--cceeeccccccceeeecccccCC
Confidence 111 112246887677776666554 46888888 2 66888888888888888888887
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.065 Score=38.45 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEcc
Q 001403 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 418 (1084)
Q Consensus 388 ~~~V~~v~fspdg~~las~~~dg~v~iwd~~ 418 (1084)
...|.+++|+|...+||.+..+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4579999999999999999999999999983
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.055 Score=52.70 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=69.8
Q ss_pred CEEEEE-eCCeEEEEEcCCceeE-EEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccc-cCEEE
Q 001403 807 AYLFSA-SGGVISLYIVMTFKTI-LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTG 883 (1084)
Q Consensus 807 ~~l~~~-sdg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~-~~V~~ 883 (1084)
..+++| ++|.|.+|...-.... .........|.++.-.-+++.+..++..||.|+.|++.-++.+.....|. .++..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 344555 4899999987622111 11111223333333333356689999999999999999988888777787 56666
Q ss_pred EEEcCCCCEEEEE--eCCCcEEEEeCCC
Q 001403 884 LVFSDALNILVSS--GGDAQIFVWDVDG 909 (1084)
Q Consensus 884 l~~spd~~~l~s~--s~dg~I~iwd~~~ 909 (1084)
+..+..++.++++ |.|..++.|++..
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchhh
Confidence 6666677777777 7788888888876
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.04 E-value=5.4 Score=44.54 Aligned_cols=139 Identities=13% Similarity=0.146 Sum_probs=79.6
Q ss_pred CCccEEEecCCCCEEEEEe------------C-CeEEEEEcCC--cee--EEEEcCCCCCeEEEEEcCCCCcEEEEEeCC
Q 001403 795 EAVPCFALSKNDAYLFSAS------------G-GVISLYIVMT--FKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDD 857 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~s------------d-g~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~s~~d~~~la~g~~d 857 (1084)
.....|+|.++|+++++-. . +.|.+++-.+ |+. ...+...-.....+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 4567899999999887752 1 2677776542 332 233433344568899998 77 444 4444
Q ss_pred CeEEEEEcCCc-----e--ee-eeecc----cccCEEEEEEcCCCCEEEEEeCC-------------------CcEEEEe
Q 001403 858 STILIYNARSS-----E--VI-SKLEG----HSKRVTGLVFSDALNILVSSGGD-------------------AQIFVWD 906 (1084)
Q Consensus 858 g~i~iwd~~~~-----~--~~-~~l~~----h~~~V~~l~~spd~~~l~s~s~d-------------------g~I~iwd 906 (1084)
...++.|.... + .+ ..+.. +......++|.|||.+.++.+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 33334344321 1 11 22322 13447789999999888766521 3344555
Q ss_pred CCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE
Q 001403 907 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 945 (1084)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 945 (1084)
.++++.. .+. .+.. ....++|+++|+++++
T Consensus 171 pdg~~~e---~~a--~G~r----np~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 171 PDGGKLR---VVA--HGFQ----NPYGHSVDSWGDVFFC 200 (367)
T ss_pred cCCCeEE---EEe--cCcC----CCccceECCCCCEEEE
Confidence 5543321 121 2222 3568999999999877
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.87 E-value=13 Score=45.20 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=64.5
Q ss_pred EEecCCCCEEEEEeCCeEEEEEcCCceeEEEEc--CCCCCeEEEEEcCCCCcEEEEEeCCCeEEE--EEcCCceeeeeec
Q 001403 800 FALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNNVIAIGMDDSTILI--YNARSSEVISKLE 875 (1084)
Q Consensus 800 l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~la~g~~dg~i~i--wd~~~~~~~~~l~ 875 (1084)
.|..|...++.+|-+..+++||+...+.++... .....|+.+.+ .+..+++|..--.|.+ |+-...++ ..+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l-~~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQL-IVFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeE-EEEe
Confidence 456677778888888999999998776665433 23456777777 4557777776555555 44443343 3333
Q ss_pred c--cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001403 876 G--HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 876 ~--h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~ 909 (1084)
+ -...|+++.+- |...+|.+..=|.+.+-.+..
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 2 22346666554 445666666666665555543
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=7.6 Score=42.58 Aligned_cols=278 Identities=9% Similarity=0.056 Sum_probs=130.0
Q ss_pred CCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeec--CCCCCeEEEEEcCCCCEEEEEeCCCE
Q 001403 334 SSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR--DPGVSVNRVVWSPDGSLLGVAYSKHI 411 (1084)
Q Consensus 334 ~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~--~h~~~V~~v~fspdg~~las~~~dg~ 411 (1084)
...+.+|+|..+.+-+|+|.. + .||....+....+..... .....+.++.|.++ ..+++| ..+.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~~----------G--~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~G-~~g~ 110 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGSN----------R--TLLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIVG-QPSL 110 (334)
T ss_pred CCceEEEEEeCCCcEEEEECC----------C--EEEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEeC-CCce
Confidence 447888999877777777621 2 345444433333221111 12234778888754 344443 4443
Q ss_pred EEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe-ccCCCcEEEEeecccCC
Q 001403 412 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKEN 490 (1084)
Q Consensus 412 v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~-~~h~~~v~~~~~~~~~~ 490 (1084)
| +-..+.|+.-.....-....+....+....++. ..+ ++..|.|..=+ +.|+.=..+ ..-...+..+.+.+ +
T Consensus 111 i-~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~-~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~--~ 183 (334)
T PRK13684 111 L-LHTTDGGKNWTRIPLSEKLPGSPYLITALGPGT--AEM-ATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSP--D 183 (334)
T ss_pred E-EEECCCCCCCeEccCCcCCCCCceEEEEECCCc--cee-eeccceEEEEC-CCCCCceeCcCCCcceEEEEEECC--C
Confidence 2 222333433332110000111112222222232 233 33344443322 233321222 12244577777743 5
Q ss_pred CcEEEEEecCCeEEEEECCCCCc--eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccc
Q 001403 491 IHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 568 (1084)
Q Consensus 491 ~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 568 (1084)
+.+ +..+..|.+.. ..+.... ..........+.++.+.++++.++++. .+.+++-....|..-.....+..
T Consensus 184 g~~-v~~g~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~d~G~sW~~~~~~~~ 256 (334)
T PRK13684 184 GKY-VAVSSRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDPDDLESWSKPIIPEI 256 (334)
T ss_pred CeE-EEEeCCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccCCCCCccccccCCcc
Confidence 444 45555565442 1122222 112233445788999999999877654 23343222333433222221110
Q ss_pred -ccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcC-CCCCCCcceEEEecCCCEEEEEECCCeEEEEE
Q 001403 569 -QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 569 -~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
....+..+.+.+++.. +.++.+|.+. .....|+.-..... ..-....+.+.|..+++.+++ +..|.|.-++
T Consensus 257 ~~~~~l~~v~~~~~~~~-~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~ 329 (334)
T PRK13684 257 TNGYGYLDLAYRTPGEI-WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYV 329 (334)
T ss_pred ccccceeeEEEcCCCCE-EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence 1135778889887764 4555677665 34455554444332 111124667777777766655 4567777665
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.84 E-value=9 Score=43.40 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=42.8
Q ss_pred eEEEEccCCCEEEEEeC--CeEEEEEcCCcc--eeeEeecCCCCCEEEEEEccCCCEEEEEeC
Q 001403 932 THIQFHKDQTRFLLVHE--THLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFV 990 (1084)
Q Consensus 932 ~~~~~s~dg~~la~~~d--~~i~vwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~ 990 (1084)
--++|.|..+.+|++++ +.|.||.+.... .+.++....+.+-..++|-.|+.+|+..|.
T Consensus 342 DliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilVGk 404 (671)
T PF15390_consen 342 DLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILVGK 404 (671)
T ss_pred ceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEecc
Confidence 35899999999999765 569999885322 233333344778889999999888776653
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.084 Score=62.59 Aligned_cols=102 Identities=13% Similarity=0.159 Sum_probs=75.8
Q ss_pred cEEEEEecCCeEEEEECCCC-CceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccccc
Q 001403 492 HFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 570 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 570 (1084)
..++.|+..|.+-..|+... .....-.....+|++++|+.+|+.++.|-. +|.|.+||..+++..+.+..+..+.
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~----~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLG----DGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccC----CCcEEEEEccCCcceeeeeecCCcc
Confidence 46888888888888877653 222233344568999999999999998865 7779999999999999888777445
Q ss_pred CceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 001403 571 NSVSVVHFDTAKDQILAAGDDHVIKIWDM 599 (1084)
Q Consensus 571 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 599 (1084)
..+..+.+..++..++++...|. +|.+
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 55555666666677888777776 5554
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.06 Score=62.24 Aligned_cols=129 Identities=14% Similarity=0.175 Sum_probs=82.7
Q ss_pred ecccCCCCceEEEEc----CCCceeeeecccccCccccccceEEEEEcCCccccce----eeeecCCCCCeEEEEEcC--
Q 001403 329 TLIEGSSSPMSMDFH----PVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFK----TALVRDPGVSVNRVVWSP-- 398 (1084)
Q Consensus 329 ~l~~h~~~V~~v~~s----pdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~----~~~~~~h~~~V~~v~fsp-- 398 (1084)
.++|..++|-.++|- |.|+.++ |.+.|||+.--...++ ......-...+.-|.|.|
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~~~v--------------g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~ 192 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGRRLV--------------GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIA 192 (1283)
T ss_pred HHhcCCCCcccccccccCChHHHHHh--------------hhhheeehHhhccccccceEEeecCcCCCCcceeeecccc
Confidence 456777888888883 3444222 7788999863211111 111222234445555554
Q ss_pred -CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEe-----------ecCCCcEEEEEEeCCCcEEEEECC-
Q 001403 399 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-----------SAPCKQISVITCGDDKTIKVWDAV- 465 (1084)
Q Consensus 399 -dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~-----------s~d~~~l~l~s~~~d~~i~vwd~~- 465 (1084)
+.-++..+-.+++|++.++++... ..+.+|...+..++| ||||+ .+++++.||.+++|.+-
T Consensus 193 ~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 193 VNKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred cccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeeeee
Confidence 677888888889998877776532 135568877777654 89999 89999999988888653
Q ss_pred ----CCceeeEeccCC
Q 001403 466 ----TGSRTYSFEGHG 477 (1084)
Q Consensus 466 ----~g~~~~~~~~h~ 477 (1084)
.-++++.++.|.
T Consensus 267 ~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 267 TGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eccccHhhhhccCCCC
Confidence 334566777776
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=1.7 Score=51.64 Aligned_cols=153 Identities=8% Similarity=-0.014 Sum_probs=74.5
Q ss_pred CCcEEEEEecC-----CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCC--CeeEEEecCCCceEeee
Q 001403 490 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG--ESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 490 ~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~--~~~i~~wd~~~~~~~~~ 562 (1084)
++.+++.|+.+ ..+..||..+..-......+.......+..-+++..+.||....+ ...+..||+.+++....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 44667777765 246677766543222111111111111122356666666632221 24688999887654332
Q ss_pred eeccccccCceEEEEEcCCCCEEEEEECC--------CcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEEC
Q 001403 563 YQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 634 (1084)
Q Consensus 563 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 634 (1084)
-.... ...... +...++..++.|+.+ ..+.+||..+++....-..... .....+..-+++.++.|+.
T Consensus 422 ~~~p~-~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPI-SHYGGC--AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP--RINASLCIFNNKIYVVGGD 496 (534)
T ss_pred CCCCc-cccCce--EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc--cccceEEEECCEEEEEcCC
Confidence 21111 001111 222345566666542 2388899888766543322111 1111122236777777765
Q ss_pred C-----CeEEEEEcCCCC
Q 001403 635 E-----NRIKILETPESN 647 (1084)
Q Consensus 635 d-----g~i~iwd~~~~~ 647 (1084)
+ +.+.+||..+.+
T Consensus 497 ~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNT 514 (534)
T ss_pred cCCcccceeEEEeCCCCE
Confidence 4 467888877653
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.12 Score=37.15 Aligned_cols=35 Identities=23% Similarity=0.560 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee
Q 001403 835 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 871 (1084)
Q Consensus 835 ~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~ 871 (1084)
...|.+++|+| ...+||.|+.+|.|.+|.+ +++.+
T Consensus 11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcCc
Confidence 35699999999 8999999999999999998 55543
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.29 E-value=1.1 Score=52.26 Aligned_cols=119 Identities=8% Similarity=0.116 Sum_probs=74.8
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec-ccccCEEEEEEc--CCCCEEEEEeCCCcEEEEeCCCC
Q 001403 834 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-GHSKRVTGLVFS--DALNILVSSGGDAQIFVWDVDGW 910 (1084)
Q Consensus 834 ~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~-~h~~~V~~l~~s--pd~~~l~s~s~dg~I~iwd~~~~ 910 (1084)
.-..++-+.-|. -++..++-+....+.|||...+.....-. ...+.|.++.|. |||+.+++.|-.+.|.++.-...
T Consensus 28 ~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 28 GISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY 106 (631)
T ss_pred CCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence 334455555555 45555554455689999999887443222 356789999887 79999999999999999864321
Q ss_pred ----ceeeeeeeecC--CCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEc
Q 001403 911 ----GIQTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 956 (1084)
Q Consensus 911 ----~~~~~~~~~~~--~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~ 956 (1084)
.......++.. ..+. ..+|.+..|-+||.+++ +.++.+.|+|-
T Consensus 107 dy~~~~p~w~~i~~i~i~~~T--~h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 107 DYTNKGPSWAPIRKIDISSHT--PHPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred hhhcCCcccceeEEEEeecCC--CCCccceeEecCCeEEE-EeCCEEEEECC
Confidence 11111111111 1111 12688999999998655 45677888764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.24 E-value=1.1 Score=52.37 Aligned_cols=112 Identities=13% Similarity=0.195 Sum_probs=77.9
Q ss_pred cEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEec-cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECC----
Q 001403 435 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD---- 509 (1084)
Q Consensus 435 ~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~---- 509 (1084)
...-+.-|.-++ ..+..+...++.|||...+...++-. ...+.|..+.|...++++.+++.+....|.++.-.
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 444555555565 44444445689999999887554433 35788999999999999999999999999998431
Q ss_pred -CCCc----e--EeecC-CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecC
Q 001403 510 -SLGA----R--VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 554 (1084)
Q Consensus 510 -~~~~----~--~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~ 554 (1084)
...+ . ..+.. ..++|....|.++|..++.++. .+.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN------qlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN------QLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC------EEEEECC
Confidence 1111 1 11222 3357889999999998887743 4888774
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.07 E-value=5.3 Score=46.41 Aligned_cols=181 Identities=13% Similarity=0.124 Sum_probs=97.4
Q ss_pred eEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee----cccccCEEEEEEcCCCC
Q 001403 816 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL----EGHSKRVTGLVFSDALN 891 (1084)
Q Consensus 816 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l----~~h~~~V~~l~~spd~~ 891 (1084)
.|+||++. |..+..+.-..+.+..+.|+. + .-|.+...+|++++|++. |+.+... +.....|..+.|..+|-
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~-eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD-D-EELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccC-C-ceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCce
Confidence 47888874 666655554455888999996 4 456668899999999986 3333221 22233465566666664
Q ss_pred EEEEEeCCCcEE-EEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCC--EEEEEeCC--eEEEEEcCCcce-eeEe
Q 001403 892 ILVSSGGDAQIF-VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT--RFLLVHET--HLAIYEAEELTC-LKQW 965 (1084)
Q Consensus 892 ~l~s~s~dg~I~-iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~--~la~~~d~--~i~vwd~~~~~~-~~~~ 965 (1084)
.+.+. +|++. +-+++..... .+....+... ...+-+.-+++. .+...-+- -..++-.+.+.. ...+
T Consensus 141 avlt~--~g~v~~i~~~~~~~~~---~~~diP~~~~---~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVLTV--SGQVILINGVEEPKLR---KMPDIPYNEL---PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EEEec--CCcEEEEcCCCcchhh---hCCCCCCccC---CCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 44443 44443 3333331111 1111111110 112222222211 11111110 111222221111 1111
Q ss_pred ecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 966 FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 966 ~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
... ...+..+..||+.++|+--..+|.|.+-..+..+..+.+.
T Consensus 213 ~~~-~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 213 SWP-NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCC-CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 111 4678889999999999999999999999999888877776
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=94.05 E-value=2.7 Score=41.37 Aligned_cols=157 Identities=11% Similarity=0.117 Sum_probs=88.9
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE----eCC---eEEEE
Q 001403 882 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HET---HLAIY 954 (1084)
Q Consensus 882 ~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~----~d~---~i~vw 954 (1084)
..++-+.. ..|..+...+.|.+|++...+......+.+. +.|..+.++..|.+|++- ... .+|+|
T Consensus 21 ~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 21 TAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTV-------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcch-------hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 33444432 3343335667799999996554443344443 268899999999999993 222 45664
Q ss_pred ---EcC--CcceeeEeecCC---------------------CCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCce-eE
Q 001403 955 ---EAE--ELTCLKQWFPIS---------------------SVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEV-QC 1006 (1084)
Q Consensus 955 ---d~~--~~~~~~~~~~~h---------------------~~~v~~l~fs~-dg~~l~t~~~dg~i~vwd~~~~~~-~~ 1006 (1084)
+.. ....++....|| +.++.+++..| .|+.|+ |+ ++.+.+|.+..... ..
T Consensus 93 ~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~~~~ 170 (215)
T PF14761_consen 93 FNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTIQSE 170 (215)
T ss_pred EEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEEecc
Confidence 322 122222222232 44666777777 455444 54 56899998887655 22
Q ss_pred EeccccccCCC-CcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcC
Q 001403 1007 RILSTAYLRPT-TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1052 (1084)
Q Consensus 1007 ~~~~~~~~~~~-~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~ 1052 (1084)
++....+.+.. .+...+.+..+++- ++++|..+ +-.++++.+
T Consensus 171 ~~~~lDFe~~l~~~~~~~~p~~v~ic---~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 171 KFSFLDFERSLIDHIDNFKPTQVAIC---EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred cccEEechhhhhheecCceEEEEEEE---eeEEEEec-CCEEEEEEE
Confidence 12111121111 13445667777777 46777664 667777765
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=93.95 E-value=9.1 Score=39.80 Aligned_cols=215 Identities=12% Similarity=0.119 Sum_probs=123.3
Q ss_pred cEeEEEeecCCCcEEEEEEeCCCcEEEEECC------CC-ceeeEecc-----CCCcEEEEeeccc------CCC----c
Q 001403 435 NVNDLAFSAPCKQISVITCGDDKTIKVWDAV------TG-SRTYSFEG-----HGAPVYSLCPHAK------ENI----H 492 (1084)
Q Consensus 435 ~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~------~g-~~~~~~~~-----h~~~v~~~~~~~~------~~~----~ 492 (1084)
.-+.|+|+|.+. +-++....+...+||.. .. ..+.++.. .....+.+.|+.. .++ .
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 457899999887 67777778899999986 12 22333332 1234555555422 111 2
Q ss_pred EEEEEecCCeEEEEECCCCCc-----eEeecCC--CCeEEEEEEcC--CCCEEEEEeeCCCCCeeEEEecCCCceEe--e
Q 001403 493 FIFSISVDGKIKAWLYDSLGA-----RVDYDAP--GLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIK--R 561 (1084)
Q Consensus 493 ~l~s~s~dg~i~iwd~~~~~~-----~~~~~~~--~~~i~~~~~s~--d~~~l~~~~~~~~~~~~i~~wd~~~~~~~--~ 561 (1084)
.++.+++||+|.-|...-... ...+... ..-...+++.. .+.+|+.+-. ..++|.++|-.=.+.. .
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 367889999999997533222 1222211 22334555543 4677777654 2667888885422211 0
Q ss_pred eeeccccc--cCc-----------eEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec----
Q 001403 562 TYQGLQLQ--HNS-----------VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---- 624 (1084)
Q Consensus 562 ~~~~~~~~--~~~-----------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---- 624 (1084)
.+...... ..+ |+...-.++...=+.|..-|.|-+||. .|++++.+...+....-..++..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 01111000 000 111111222222233344578999998 578888887666655566777755
Q ss_pred --CCCEEEEEECCCeEEEEEcCCCCeeeecccc
Q 001403 625 --NGTLLAVIANENRIKILETPESNSVDAAGVL 655 (1084)
Q Consensus 625 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 655 (1084)
.+.+|+---.||+|..+|..+++.+..+...
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~ 290 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLDP 290 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecCC
Confidence 3666776667999999999998877766643
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.23 Score=48.54 Aligned_cols=105 Identities=12% Similarity=0.045 Sum_probs=64.7
Q ss_pred CCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEe-ecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCC-
Q 001403 400 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG- 477 (1084)
Q Consensus 400 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~-s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~- 477 (1084)
++.+++|+.+|.|.+|++..-..... ....-...|.++.- ..++. +..+++.|+.|+.|++.-++.+.....|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d--~~~s~~e~i~~~Ip~~~~~~--~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~ 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSD--RVCSGEESIDLGIPNGRDSS--LGCVGAQDGRIRACNIKPNKVLGYVGQHNF 145 (238)
T ss_pred CceEEeecccceEEEecCCccchHHH--hhhcccccceeccccccccc--eeEEeccCCceeeeccccCceeeeeccccC
Confidence 56788999999999999873211110 01111223333322 23333 67788889999999999888887777777
Q ss_pred CcEEEEeecccCCCcEEEEE--ecCCeEEEEECCC
Q 001403 478 APVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDS 510 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~~l~s~--s~dg~i~iwd~~~ 510 (1084)
.++...... ..+.+++.+ |.|..++.|++..
T Consensus 146 ~~~e~~ivv--~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 146 ESGEELIVV--GSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCcceeEEe--cCCceEEeeccccchhhhhcchhh
Confidence 444444432 233456665 6667777776653
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=2.3 Score=50.50 Aligned_cols=197 Identities=11% Similarity=0.004 Sum_probs=91.1
Q ss_pred CCCCEEEEEeCCC------EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC-----CcEEEEECCC
Q 001403 398 PDGSLLGVAYSKH------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVT 466 (1084)
Q Consensus 398 pdg~~las~~~dg------~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d-----~~i~vwd~~~ 466 (1084)
.++..++.|+.++ .+..||..+++-.. ...+.........+ .-+++ +.+.||.+ ..+..||..+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~--~~~~~--lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVT--VFNNR--IYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEE--EECCE--EEEEeCCCCCEecceEEEEcCCC
Confidence 3456666665432 47788877754321 11111111111222 22455 55666654 3577888876
Q ss_pred Cceee--EeccCCCcEEEEeecccCCCcEEEEEecC------CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEE
Q 001403 467 GSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 538 (1084)
Q Consensus 467 g~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 538 (1084)
++-.. .+....... +++. . ++.+.+.|+.+ ..+..||..+.+-......+.......+...++...+.
T Consensus 368 ~~W~~~~~lp~~r~~~-~~~~--~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 443 (534)
T PHA03098 368 SKWREEPPLIFPRYNP-CVVN--V-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVI 443 (534)
T ss_pred CceeeCCCcCcCCccc-eEEE--E-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEE
Confidence 64321 111111111 1111 1 44566666632 35778887654322211111111111222345666666
Q ss_pred EeeCCCC----CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeEEE
Q 001403 539 CGTSKEG----ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLT 606 (1084)
Q Consensus 539 ~~~~~~~----~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 606 (1084)
|+..... -..+.+||..+++....-.... .......+.+ +++.++.|+.+ ..+.+||..+.+...
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 517 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNF-PRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWTL 517 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCc-ccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEEe
Confidence 6543221 1348889988776543221111 0111222222 56666667654 467888887766543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.63 E-value=22 Score=43.13 Aligned_cols=93 Identities=10% Similarity=0.033 Sum_probs=56.4
Q ss_pred CCCccEEEecCCCCEEEEEeCCeEEEEEcCC-ceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee
Q 001403 794 QEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 872 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~ 872 (1084)
.-.|..+.++|+|++++..+...|.|..+.. ......+.+....|.|-.+.- +..++
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~--------------------- 141 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFF--------------------- 141 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhc---------------------
Confidence 4478899999999999999877777766632 111112222222222222221 11111
Q ss_pred eecccccCEEEEEEcCC---CCEEEEEeCCCcEEEEeCCC
Q 001403 873 KLEGHSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 873 ~l~~h~~~V~~l~~spd---~~~l~s~s~dg~I~iwd~~~ 909 (1084)
...+...|..+.|+|. +..|+.-..|+++++||+..
T Consensus 142 -~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 142 -TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred -cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 1123456778888885 47888888899999999975
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.46 E-value=1.8 Score=52.01 Aligned_cols=91 Identities=15% Similarity=0.257 Sum_probs=62.2
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC----------C--ceeEEecccc-ccCCCCcccceeeeEEEECCC--C
Q 001403 970 SVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------L--EVQCRILSTA-YLRPTTSCLHVYPHAIAAHPL--K 1034 (1084)
Q Consensus 970 ~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~----------~--~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~p~--d 1034 (1084)
.-.|..|.++++|++|+..|..| |.|-.+.. | +..|+..+.. .+-. .+.......+.|||. +
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~--~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT--SNSSLEIKQVRWHPWSES 160 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhcc--CCCCceEEEEEEcCCCCC
Confidence 45788999999999999998765 44544432 1 2344433211 1111 133455668999995 3
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCcccCC
Q 001403 1035 PTQFAVGLTNGEVYVIEPNEPGDTWAVLP 1063 (1084)
Q Consensus 1035 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~ 1063 (1084)
+..|++-..|+.+++||+.+...-|++.+
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 58899999999999999988776677665
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=93.35 E-value=9 Score=40.82 Aligned_cols=170 Identities=10% Similarity=0.062 Sum_probs=96.2
Q ss_pred eEEEEEcCCceeEEEEcCC------CCCeEEEEEcCCCC----cEEEEEe-CCCeEEEEEcCCceeeeeeccc-------
Q 001403 816 VISLYIVMTFKTILTIMPP------SPTATSLAFNPHDN----NVIAIGM-DDSTILIYNARSSEVISKLEGH------- 877 (1084)
Q Consensus 816 ~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~----~~la~g~-~dg~i~iwd~~~~~~~~~l~~h------- 877 (1084)
+|.+||+.+++.++++.-+ .+....+++...++ .++.... ..+.|.|+|+.+++.-+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6899999999988876533 34677888776322 2444443 3458999999998754443322
Q ss_pred ------------ccCEEEEEEcC---CCCEEEEEeCCCcEEEEeCCCCceeeee---------eeecCCCCccCCCCceE
Q 001403 878 ------------SKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGWGIQTCR---------SLQTPDGVMTLAPSETH 933 (1084)
Q Consensus 878 ------------~~~V~~l~~sp---d~~~l~s~s~dg~I~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~v~~ 933 (1084)
.+.+..++.+| |+++|....-.+ -++|.+.+....... .++.. +.. ......
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k--~~~s~g 190 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDK--GSQSDG 190 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----SECE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-ccc--CCCCce
Confidence 23366677765 666777665444 345555442111100 00100 000 013567
Q ss_pred EEEccCCCEEEE-EeCCeEEEEEcCCcc---eeeEeec-CC-CCCEEEEEEcc--CCCEEEEEe
Q 001403 934 IQFHKDQTRFLL-VHETHLAIYEAEELT---CLKQWFP-IS-SVPISQATFSC--DCRMVFTSF 989 (1084)
Q Consensus 934 ~~~s~dg~~la~-~~d~~i~vwd~~~~~---~~~~~~~-~h-~~~v~~l~fs~--dg~~l~t~~ 989 (1084)
++++++|.+..+ ...+.|..|+..+.- ....+.. .. -..+.++.+.+ +|.+.+.+.
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 899999998888 588899999987511 1222221 22 35678899988 777666553
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=93.27 E-value=13 Score=41.73 Aligned_cols=201 Identities=11% Similarity=0.005 Sum_probs=109.4
Q ss_pred ecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCC--CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccc-
Q 001403 802 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS- 878 (1084)
Q Consensus 802 ~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~- 878 (1084)
..-||+.++...+|.+.-.|..+++.+....... ..+..-.+.. +|+ |+.++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 3346666666668888888888888665443221 2333333333 565 7778999999999998999888776555
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEe--CCeEEEEEc
Q 001403 879 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--ETHLAIYEA 956 (1084)
Q Consensus 879 ~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--d~~i~vwd~ 956 (1084)
-.+..-..-.++..++ ++.++.+...|-.+|+..-.......... .+..-....++...+... ++.+.-.|.
T Consensus 143 ~~~~~~~v~~~~~v~~-~s~~g~~~al~~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 143 PYYASPPVVGDGTVYV-GTDDGHLYALNADTGTLKWTYETPAPLSL-----SIYGSPAIASGTVYVGSDGYDGILYALNA 216 (370)
T ss_pred eEEecCcEEcCcEEEE-ecCCCeEEEEEccCCcEEEEEecCCcccc-----ccccCceeecceEEEecCCCcceEEEEEc
Confidence 1122222223433332 33667777777776654332111110000 011111133444444433 456777777
Q ss_pred CCcceeeEeecCCCCCEE---EEEEcc-----CCCEEEEEeCCCcEEEEEcCCCceeEEecc
Q 001403 957 EELTCLKQWFPISSVPIS---QATFSC-----DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1010 (1084)
Q Consensus 957 ~~~~~~~~~~~~h~~~v~---~l~fs~-----dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1010 (1084)
.+|.........+...-+ ...... .+.-+..++.+|.+...|..+|+.+.++..
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 778776653221111110 011111 122245667788899999999999877774
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.18 E-value=11 Score=38.35 Aligned_cols=193 Identities=12% Similarity=0.098 Sum_probs=126.5
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 001403 837 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 916 (1084)
Q Consensus 837 ~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~ 916 (1084)
.-..++-+| ||..-.++...|.|--.|-.+|+....--+....-..+..-|||..-++-+.. -|.-.|-++.+....
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f- 139 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRF- 139 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEe-
Confidence 446778888 88899999888889888999998766555555566778888998877764443 355556655543332
Q ss_pred eeecCCCCccCCCCceEEEEccCCCEEEEEeCC----------eEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEE
Q 001403 917 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 986 (1084)
Q Consensus 917 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~----------~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 986 (1084)
.....+. ........|.++|.+-.++..| .|++|+... ...-..||..|||..-+
T Consensus 140 --~lp~~~a--~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-----------G~gpyGi~atpdGsvwy 204 (353)
T COG4257 140 --PLPLEHA--DANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-----------GGGPYGICATPDGSVWY 204 (353)
T ss_pred --ecccccC--CCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-----------CCCCcceEECCCCcEEE
Confidence 2222221 1357789999999998886433 355555442 33456789999999988
Q ss_pred EEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 987 TSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 987 t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
+.-.+..|..-|..++... .+.....+..+ +..+..+|+ |..-++....|.++.+|.+...
T Consensus 205 aslagnaiaridp~~~~ae-v~p~P~~~~~g-------sRriwsdpi-g~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 205 ASLAGNAIARIDPFAGHAE-VVPQPNALKAG-------SRRIWSDPI-GRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred EeccccceEEcccccCCcc-eecCCCccccc-------ccccccCcc-CcEEEeccCCceeeEeCccccc
Confidence 8777888888887777322 22211111111 122445564 6777777777888888876544
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.051 Score=62.78 Aligned_cols=140 Identities=14% Similarity=0.083 Sum_probs=84.3
Q ss_pred CCeEEEEEcCCce-eeeeecccccCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCC--CceeeeeeeecCCCCccCCCCce
Q 001403 857 DSTILIYNARSSE-VISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSET 932 (1084)
Q Consensus 857 dg~i~iwd~~~~~-~~~~l~~h~~~V~~l~~spd-~~~l~s~s~dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~ 932 (1084)
.+.+++-+..+.- .-..++|..+.|..+.|..- ...++ -.-|.+.|||++- |+......+............|.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 4557776665432 12345677788888888642 12222 2336789999874 44333333333332222123455
Q ss_pred EEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCEEEEE-----------EccCCCEEEEEeCCCcEEEEEcC
Q 001403 933 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQAT-----------FSCDCRMVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 933 ~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~-----------fs~dg~~l~t~~~dg~i~vwd~~ 1000 (1084)
.+-|-++..++..+ .++.+++....+... .++.+|...+..++ .||||+.++.+..||.++.|.+.
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 55566677666665 556677666544332 33445766666554 48999999999999999999865
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.00 E-value=28 Score=42.50 Aligned_cols=187 Identities=13% Similarity=0.053 Sum_probs=104.9
Q ss_pred eEEEEEcCCceeeeeecccc----cCEEEEEEcCCCC--EEEEEe-----------CCCcEEEEeCCCCceeeeeeeecC
Q 001403 859 TILIYNARSSEVISKLEGHS----KRVTGLVFSDALN--ILVSSG-----------GDAQIFVWDVDGWGIQTCRSLQTP 921 (1084)
Q Consensus 859 ~i~iwd~~~~~~~~~l~~h~----~~V~~l~~spd~~--~l~s~s-----------~dg~I~iwd~~~~~~~~~~~~~~~ 921 (1084)
.|++.|..+++.+..+.-.. -.|..+.|+.... +++.++ .+|.++.|++-..... ...+...
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~-lellh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDK-LELLHKT 932 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCce-eeeeecc
Confidence 47788877776655444211 2456666764332 333332 2334555554432211 1111111
Q ss_pred CCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001403 922 DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 922 ~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~ 1000 (1084)
.- .-.-.+..|-..++.+|....+++||+...+.++.....+ ...|+.+++- +..+++|...-.|..+..+
T Consensus 933 ~~------~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 933 EI------PGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred CC------CccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEe
Confidence 10 1223566787789999999999999998887776644444 5667777754 5578888776667665544
Q ss_pred CC-ceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCCCcccCCC
Q 001403 1001 NL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPP 1064 (1084)
Q Consensus 1001 ~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~ 1064 (1084)
.. ..+..+.- ... ...|. ++.+- |-..++.|+.=|++.+-.++..-.......|
T Consensus 1005 ~~~n~l~~fad-D~~-----pR~Vt--~~~~l--D~~tvagaDrfGNi~~vR~P~d~~e~~~edp 1059 (1205)
T KOG1898|consen 1005 REDNQLIVFAD-DPV-----PRHVT--ALELL--DYDTVAGADRFGNIAVVRIPPDVSEEASEDP 1059 (1205)
T ss_pred cCCCeEEEEeC-CCc-----cceee--EEEEe--cCCceeeccccCcEEEEECCCcchhhhccCC
Confidence 43 22223331 111 11122 22222 4679999999999999988665544333333
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.93 E-value=5 Score=44.81 Aligned_cols=147 Identities=9% Similarity=0.053 Sum_probs=77.6
Q ss_pred cCEEEEEEcCCCCEEEEEe-----------CCC-cEEEEeCCCC--ceeeeeeeecCCCCccCCCCceEEEEccCCCEEE
Q 001403 879 KRVTGLVFSDALNILVSSG-----------GDA-QIFVWDVDGW--GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 944 (1084)
Q Consensus 879 ~~V~~l~~spd~~~l~s~s-----------~dg-~I~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 944 (1084)
.....|+|.++|+++++-. ..+ .|.+++-..+ .......+..... ....+++.++| +++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~------~p~Gi~~~~~G-lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELS------MVTGLAVAVGG-VYV 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCC------CccceeEecCC-EEE
Confidence 3456789999998887753 223 6777765432 2222222222111 35689999999 444
Q ss_pred EEeCCeEEEE-EcCC-c----c--eeeEeecC----CCCCEEEEEEccCCCEEEEEeCC-------------------Cc
Q 001403 945 LVHETHLAIY-EAEE-L----T--CLKQWFPI----SSVPISQATFSCDCRMVFTSFVD-------------------GT 993 (1084)
Q Consensus 945 ~~~d~~i~vw-d~~~-~----~--~~~~~~~~----h~~~v~~l~fs~dg~~l~t~~~d-------------------g~ 993 (1084)
+ ....|..| |... + + .+..-+.. +......++|.|||.+.++.+.. |.
T Consensus 87 ~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 87 A-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred e-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 4 34445544 4431 1 1 12221211 13447789999999877765521 33
Q ss_pred EEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCC
Q 001403 994 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG 1045 (1084)
Q Consensus 994 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg 1045 (1084)
|.-++..+++.. .+. ...-.+..++|+| +|+++++-..++
T Consensus 166 i~r~~pdg~~~e-~~a----------~G~rnp~Gl~~d~-~G~l~~tdn~~~ 205 (367)
T TIGR02604 166 LFRYNPDGGKLR-VVA----------HGFQNPYGHSVDS-WGDVFFCDNDDP 205 (367)
T ss_pred EEEEecCCCeEE-EEe----------cCcCCCccceECC-CCCEEEEccCCC
Confidence 444444444332 111 1123345689998 577776644333
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.76 E-value=5.4 Score=38.68 Aligned_cols=177 Identities=14% Similarity=0.111 Sum_probs=92.8
Q ss_pred CCCEEEEEe---CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCE
Q 001403 805 NDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV 881 (1084)
Q Consensus 805 dg~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V 881 (1084)
+|+++.+.+ ...|++||+.+|+.+..-.-....+..=-...-+..+.+---.+|.-.++|.++.+++.++. ..+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 556666665 36799999999998766543322221111111023344445678889999999988877665 23333
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcc
Q 001403 882 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT 960 (1084)
Q Consensus 882 ~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~ 960 (1084)
+.++ .|++.|..++...+++.-|-++-.......+ +.++... ..+.-+.|- ||...|- -....|...+..+|+
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~V-T~~g~pv--~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQV-TDDGVPV--SKLNELEWV-DGELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEE-EECCeec--ccccceeee-ccEEEEeeeeecceEEEcCCCCc
Confidence 4443 3666677766666677777665322221111 1111110 011122221 3433332 233444444555555
Q ss_pred eeeEe-----------ecCCCCCEEEEEEccCC-CEEEEE
Q 001403 961 CLKQW-----------FPISSVPISQATFSCDC-RMVFTS 988 (1084)
Q Consensus 961 ~~~~~-----------~~~h~~~v~~l~fs~dg-~~l~t~ 988 (1084)
.+.-+ ...|..-...+++.|++ ++++||
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 44322 22244566788999877 555555
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.29 E-value=5.4 Score=46.35 Aligned_cols=185 Identities=8% Similarity=-0.041 Sum_probs=88.0
Q ss_pred EEEEEeCC-----CcEEEEECCCCceee--EeccCCCcEEEEeecccCCCcEEEEEecCC--eEEEEECCCCCceEeecC
Q 001403 449 SVITCGDD-----KTIKVWDAVTGSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARVDYDA 519 (1084)
Q Consensus 449 ~l~s~~~d-----~~i~vwd~~~g~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~ 519 (1084)
+++.||.+ .++..||..+++... .+.........+.. ++.+.+.|+.++ .+..||....+-......
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~----~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA----NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE----CCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 44555543 246677877654322 12111111112222 456667777543 477787654322211111
Q ss_pred CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 001403 520 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 599 (1084)
Q Consensus 520 ~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 599 (1084)
+.......+..-+|+..+.||.++. ...+..||..+.+-...-.-.. .......+ .-++...+.| |.+.+||.
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~-~r~~~~~~--~~~~~IYv~G---G~~e~ydp 422 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYY-PHYKSCAL--VFGRRLFLVG---RNAEFYCE 422 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCC-ccccceEE--EECCEEEEEC---CceEEecC
Confidence 1111112223346676677665332 3557889988765543221111 01111222 2345555555 35778999
Q ss_pred CCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC-----CeEEEEEcCCC
Q 001403 600 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETPES 646 (1084)
Q Consensus 600 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 646 (1084)
.+++....-...... ...-+..-+++..++|+.+ ..+..||..++
T Consensus 423 ~~~~W~~~~~m~~~r--~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 423 SSNTWTLIDDPIYPR--DNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCcEeEcCCCCCCc--cccEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 887665443322211 1122223367788887754 35667776654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.19 E-value=9.3 Score=44.53 Aligned_cols=185 Identities=10% Similarity=0.114 Sum_probs=97.3
Q ss_pred CCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE---eecCCCCeEEEEEEcCC
Q 001403 456 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSAN 532 (1084)
Q Consensus 456 d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s~d 532 (1084)
--.|+|++ .+|+.+.++.-..+.+-.+.|+- + ..|+....+|++++|++-...... ........|..+.+..+
T Consensus 63 ~~~I~If~-~sG~lL~~~~w~~~~lI~mgWs~--~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 63 RPYIRIFN-ISGQLLGRILWKHGELIGMGWSD--D-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHN 138 (829)
T ss_pred ceeEEEEe-ccccchHHHHhcCCCeeeecccC--C-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecC
Confidence 44688888 57887777655455788888843 3 578999999999999875433222 12233345666666666
Q ss_pred CCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEE---EcCCCCEEEEEECCCc--EEEEECCCCeEEEE
Q 001403 533 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH---FDTAKDQILAAGDDHV--IKIWDMNKVQLLTT 607 (1084)
Q Consensus 533 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~---~s~~~~~l~~~~~dg~--i~iwd~~~~~~~~~ 607 (1084)
|-.+.+.+ +.+.+-+-........++... .......+ +.|.........-+-. ..+...... ..+.
T Consensus 139 GVavlt~~------g~v~~i~~~~~~~~~~~~diP--~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~-~~q~ 209 (829)
T KOG2280|consen 139 GVAVLTVS------GQVILINGVEEPKLRKMPDIP--YNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEES-RVQL 209 (829)
T ss_pred ceEEEecC------CcEEEEcCCCcchhhhCCCCC--CccCCCcceeEecCCCcceeEEeechhhhhcccceecc-cccc
Confidence 65555543 224443322222223332211 01111112 2221111111111100 011111111 0111
Q ss_pred EcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeecc
Q 001403 608 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 653 (1084)
Q Consensus 608 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 653 (1084)
.........+..++.||+.++|+.-...|.|.+-+....+.+..+.
T Consensus 210 ~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 210 HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 1111112347789999999999999999999999888776665554
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.13 E-value=2.5 Score=51.19 Aligned_cols=145 Identities=11% Similarity=0.068 Sum_probs=88.4
Q ss_pred CEEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCceee---eeeeecCCCCccCCCCceEEEEccCCCE--EEEEeCCeEE
Q 001403 880 RVTGLVFSDALNILVSS--GGDAQIFVWDVDGWGIQT---CRSLQTPDGVMTLAPSETHIQFHKDQTR--FLLVHETHLA 952 (1084)
Q Consensus 880 ~V~~l~~spd~~~l~s~--s~dg~I~iwd~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~dg~~--la~~~d~~i~ 952 (1084)
+|..+...+|+...+.. +.+-.|..||+..-.... ...+....-.........++.|.|.=-. ++.-.|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 56667777787665543 344478899988633221 1111111111111234567778776433 3335888888
Q ss_pred EEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECC
Q 001403 953 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHP 1032 (1084)
Q Consensus 953 vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p 1032 (1084)
+..+........-. .-....++++|||.|+.++.|-..|++.-|... ++...++......+ .+++++++|-.
T Consensus 182 V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e------~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEE------NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCC------CcceeEEEEec
Confidence 88775433332211 235678999999999999999999999887654 56665665444433 25677888874
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.5 Score=50.61 Aligned_cols=158 Identities=9% Similarity=0.093 Sum_probs=97.1
Q ss_pred CCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEE-EEcCC-CC----CeE-EEEEcCCCCcEEEEEeCCCeEEEE-E
Q 001403 793 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL-TIMPP-SP----TAT-SLAFNPHDNNVIAIGMDDSTILIY-N 864 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~-~~~~~-~~----~i~-~l~~s~~d~~~la~g~~dg~i~iw-d 864 (1084)
....+..+-..|||+.+..-+..++.++++.+..... .+... .+ .|+ ++..-. ++.-|.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 4567888899999999999988999999987543321 11111 11 122 222233 67778889999988877 4
Q ss_pred cCCc-e----eeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccC
Q 001403 865 ARSS-E----VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 939 (1084)
Q Consensus 865 ~~~~-~----~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 939 (1084)
...+ . .+..++-...++..+.--.+.+-+++-+..|++.++.....+.. ..+... ..+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l---L~~~~~------~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL---LFERAY------QAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce---ehhhhh------cCcceeeeCcc
Confidence 4332 2 11222212233333332234456777788888887765553211 111111 14668999999
Q ss_pred CCEEEEEeCCeEEEEEcCCcc
Q 001403 940 QTRFLLVHETHLAIYEAEELT 960 (1084)
Q Consensus 940 g~~la~~~d~~i~vwd~~~~~ 960 (1084)
+.++++-..|.++++.+++..
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRN 389 (733)
T ss_pred cchheeecCCceEEEEecCCC
Confidence 999999888999999887544
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.57 E-value=7.3 Score=45.31 Aligned_cols=184 Identities=11% Similarity=-0.012 Sum_probs=92.4
Q ss_pred CCCEEEEEe-C-----CeEEEEEcCCceeEE--EEcCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCce--eee
Q 001403 805 NDAYLFSAS-G-----GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSE--VIS 872 (1084)
Q Consensus 805 dg~~l~~~s-d-----g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~la~g~~dg--~i~iwd~~~~~--~~~ 872 (1084)
++..+++|+ + ..+..||..+.+-.. .+.........+ .- ++++.++|+.++ .+..||..+++ .+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EE-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 445555554 2 347778877654322 222111122222 23 678888888643 68888876542 223
Q ss_pred eecccccCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCC
Q 001403 873 KLEGHSKRVTGLVFSDALNILVSSGGDA---QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 949 (1084)
Q Consensus 873 ~l~~h~~~V~~l~~spd~~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~ 949 (1084)
.+.........+ .-+|++.+.||.++ .+..||..+..-.....+.... ....+..-+|++.+.| |
T Consensus 348 ~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r--------~~~~~~~~~~~IYv~G--G 415 (480)
T PHA02790 348 SLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH--------YKSCALVFGRRLFLVG--R 415 (480)
T ss_pred CCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc--------ccceEEEECCEEEEEC--C
Confidence 332111111222 23688888888654 4678888775432211111111 1122334566666665 4
Q ss_pred eEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCce
Q 001403 950 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEV 1004 (1084)
Q Consensus 950 ~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~i~vwd~~~~~~ 1004 (1084)
.+.+||..+++-.......+...-.+++ .-+|+..+.||.+ .+|.+||..+++.
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred ceEEecCCCCcEeEcCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 5678888765433221111111111222 3467777778754 3466777776654
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.56 E-value=3.3 Score=45.64 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=68.1
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEE---------cCCCc--eeEEecccc-ccCCCCcccceeeeEEEECCCC--C
Q 001403 970 SVPISQATFSCDCRMVFTSFVDGTLSIHE---------ASNLE--VQCRILSTA-YLRPTTSCLHVYPHAIAAHPLK--P 1035 (1084)
Q Consensus 970 ~~~v~~l~fs~dg~~l~t~~~dg~i~vwd---------~~~~~--~~~~~~~~~-~~~~~~~~~~v~~~~~~~~p~d--~ 1035 (1084)
.-.|..+..|+.|..++-.|.+|.+.++= ++.|+ ..|+..+.. .+-. .+.++....++|||+. .
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ft--ss~~ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFT--SSTSLTLKQAAWHPSSILD 180 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeec--cCCceeeeeccccCCccCC
Confidence 34677888899999999999998655432 23342 344433211 1111 2345777788999963 4
Q ss_pred CEEEEEeCCCcEEEEcCCCCCCCcccCCCCCcccC
Q 001403 1036 TQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGD 1070 (1084)
Q Consensus 1036 ~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 1070 (1084)
..|+.-+.|..+++|++++..--|..++|..+.+.
T Consensus 181 ~hL~iL~sdnviRiy~lS~~telylqpgepgRS~t 215 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSEPTELYLQPGEPGRSPT 215 (741)
T ss_pred ceEEEEecCcEEEEEecCCcchhhccCCCcCCCCc
Confidence 68888899999999999998878888777664443
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.26 E-value=6.8 Score=42.59 Aligned_cols=142 Identities=8% Similarity=0.041 Sum_probs=84.2
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc---eeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 001403 838 ATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 914 (1084)
Q Consensus 838 i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~---~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~ 914 (1084)
.+.+-|.. .++.|. +...|.+.=|-.... -++.--....++|.++.||+|.+.||.--.|.+|.+.+....+...
T Consensus 25 sngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ccceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 34555654 233333 333444555544321 1222222356799999999999999999999999999985533221
Q ss_pred eeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEE
Q 001403 915 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 986 (1084)
Q Consensus 915 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 986 (1084)
..... +......|....|+.+ .-+|...+..+.+|-....+..-.....|+..|.=-.|.++-+.++
T Consensus 103 ~~~~~----ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 103 EYTQE----CKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred HHHHH----hccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence 11111 1111124888888877 5566666666777776544333333455666777777777766543
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=91.24 E-value=23 Score=37.74 Aligned_cols=167 Identities=11% Similarity=0.078 Sum_probs=91.0
Q ss_pred cEEEEECCCCceeeEecc------CCCcEEEEeecccCC----CcEEEEEecCCeEEEEECCCCCceEeecCC-------
Q 001403 458 TIKVWDAVTGSRTYSFEG------HGAPVYSLCPHAKEN----IHFIFSISVDGKIKAWLYDSLGARVDYDAP------- 520 (1084)
Q Consensus 458 ~i~vwd~~~g~~~~~~~~------h~~~v~~~~~~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------- 520 (1084)
.|.+||+.+++.++++.- ..+.+..+.+...+. +...++-+..+-|.++|+.+++........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 688899999998877643 245677777755332 233444445567999999886654433221
Q ss_pred ------------CCeEEEEEEcC---CCCEEEEEeeCCCCCeeEEEecCCC-----ce---------EeeeeeccccccC
Q 001403 521 ------------GLGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESE-----GA---------IKRTYQGLQLQHN 571 (1084)
Q Consensus 521 ------------~~~i~~~~~s~---d~~~l~~~~~~~~~~~~i~~wd~~~-----~~---------~~~~~~~~~~~~~ 571 (1084)
...+..++.+| +|+.|+.....+ -.+|.+.+ .. .+..+ +.. ..
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k--~~ 186 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDK--GS 186 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-ccc--CC
Confidence 11355666655 677777665321 12222221 11 11111 111 13
Q ss_pred ceEEEEEcCCCCEEEEEECCCcEEEEECCCC---eEEEEEc-CCCCCCCcceEEEec--CCCEEEEE
Q 001403 572 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKV---QLLTTID-AGGGLPENPRICFNK--NGTLLAVI 632 (1084)
Q Consensus 572 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~-~~~~~~~v~~v~~s~--~~~~l~~~ 632 (1084)
....++++++|..+++--..+.|..|+..+. +....+. .......+..+.+.+ +|.+.+..
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 4567888999988888889999999998861 1122222 222233456777777 56554443
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=90.82 E-value=37 Score=43.88 Aligned_cols=149 Identities=14% Similarity=0.155 Sum_probs=86.1
Q ss_pred CCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEE
Q 001403 333 GSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 412 (1084)
Q Consensus 333 h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v 412 (1084)
|-..++.|.-+|+|.++=. +++.++.||..+...... -......++.+.-.-||+..| =+.+
T Consensus 361 H~A~LTgv~~~~~ge~lRl-----------Hd~~LY~~d~~~~~Wk~~---~~~~d~~~S~Ls~qgdG~lYA-k~~~--- 422 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLRL-----------HDDRLYQFDPNTARWKPP---PDKSDTPFSSLSRQGDGKLYA-KDDD--- 422 (1774)
T ss_pred HHHHhhccccCCCCCeEEe-----------ecCceeeeccccceecCC---CCcccchhhhhcccCCCceEe-cCCC---
Confidence 4445666666666666544 347888888775443311 011234556666666777766 2222
Q ss_pred EEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC------ce--eeEeccCCCcEEEEe
Q 001403 413 QLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG------SR--TYSFEGHGAPVYSLC 484 (1084)
Q Consensus 413 ~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g------~~--~~~~~~h~~~v~~~~ 484 (1084)
.|-|+..+.... ..-..+.+...+++|.- .+.++-...++.+|++... ++ .-.+.+-.....+|.
T Consensus 423 ~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~Vg 495 (1774)
T PF11725_consen 423 TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVG 495 (1774)
T ss_pred ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhhee
Confidence 244555543211 12235777888999983 3666766667799998743 11 122333333556666
Q ss_pred ecccCCCcEEEEEecCCeEEEEECCC
Q 001403 485 PHAKENIHFIFSISVDGKIKAWLYDS 510 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~dg~i~iwd~~~ 510 (1084)
+ +++ .|+.+..+|.++.=++..
T Consensus 496 L--s~d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 496 L--SND--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred e--cCC--eEEEEeCCCCEEeccccc
Confidence 6 333 688889999888776654
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=90.54 E-value=24 Score=36.81 Aligned_cols=253 Identities=11% Similarity=0.099 Sum_probs=122.8
Q ss_pred cceEEEecCCCEEEEEECCCeEEEEEcCCC-------Ceeeeccc-----cccceeEEEEcCCCceeeeeccCceeEecC
Q 001403 617 NPRICFNKNGTLLAVIANENRIKILETPES-------NSVDAAGV-----LSDNLRKLSVNPISTVTGAGIANGSVSVNE 684 (1084)
Q Consensus 617 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~-----~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~ 684 (1084)
-..++++|.+.+.++....+...+||.... ..+-.+.. .....+.+.|+.... ..+..
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~----------F~vt~ 94 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDT----------FVVSG 94 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCc----------eEEcC
Confidence 467999999988888877889999998621 11112211 111233333432211 11111
Q ss_pred CCCCCCCccceecccCccccccceeecCcc-ceeeccCCccccceEEEEEEec--CCCeEEEee-cCCceEEeeccCCcc
Q 001403 685 DPKEDVKPEISVEAENKSEVEKPLFARPSE-CQSLLLPSKVKANKISRLTYNN--GGQAIFALA-SNGVHLMWRWPRNDL 760 (1084)
Q Consensus 685 ~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~--~g~~l~~~~-~dg~i~vw~~~~~~~ 760 (1084)
........++.+++||+|.-|......... ...+.........-...+++-. .+.+|.++. .+++|.|+|-.-...
T Consensus 95 ~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~ 174 (336)
T TIGR03118 95 EGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP 174 (336)
T ss_pred CCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc
Confidence 111122346889999999999965433310 0111111111122233455443 355555543 367888776443322
Q ss_pred CcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCC--CCC
Q 001403 761 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP--SPT 837 (1084)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~--~~~ 837 (1084)
...+...... +..+-.... ....+..-.|+-..-.++++.=+.+. -|.|-+||+. |..++++... -..
T Consensus 175 ~~~g~F~DP~------iPagyAPFn--Iqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNa 245 (336)
T TIGR03118 175 PLPGSFIDPA------LPAGYAPFN--VQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNA 245 (336)
T ss_pred cCCCCccCCC------CCCCCCCcc--eEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccC
Confidence 1111111000 000000000 00000000000001111111111111 3679999975 6777776422 234
Q ss_pred eEEEEEcCC-----CCcEEEEEeCCCeEEEEEcCCceeeeeeccccc------CEEEEEEcC
Q 001403 838 ATSLAFNPH-----DNNVIAIGMDDSTILIYNARSSEVISKLEGHSK------RVTGLVFSD 888 (1084)
Q Consensus 838 i~~l~~s~~-----d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~------~V~~l~~sp 888 (1084)
...|+..|. .+.+|+---.||+|-.||..+|+.+..+....+ ..+.|+|-.
T Consensus 246 PWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 246 PWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 566666542 467777767899999999999988877765332 456777764
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=90.34 E-value=8.2 Score=45.73 Aligned_cols=174 Identities=13% Similarity=0.107 Sum_probs=93.7
Q ss_pred CCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEE
Q 001403 806 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 885 (1084)
Q Consensus 806 g~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~ 885 (1084)
+.+++++..+.|.||+......... ..++..+...| .. +...|+.+..|. ..|. |+.+.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~----~~p~~~~~t~p---~~--~~~~D~~~s~~p----------~PHt--IN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPS----RKPCLRFDTKP---EF--TSTPDRLISTWP----------FPHT--INFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccc----cccccccccCc---cc--cccccccccCCC----------CCce--eeEEE
Confidence 7788889999999999864322110 01112222222 11 122233333332 1121 23222
Q ss_pred Ec--CCCCEEEEEeCCCcEEEEeCCCCc---------ee--eeeeeecCCCCccCCCCceEEEEc--cCCCEEEEEeC-C
Q 001403 886 FS--DALNILVSSGGDAQIFVWDVDGWG---------IQ--TCRSLQTPDGVMTLAPSETHIQFH--KDQTRFLLVHE-T 949 (1084)
Q Consensus 886 ~s--pd~~~l~s~s~dg~I~iwd~~~~~---------~~--~~~~~~~~~~~~~~~~~v~~~~~s--~dg~~la~~~d-~ 949 (1084)
.. -+...|+.+.+||.|.+|.++.-- .. .....-.+.-+......++.+++. ...++||++++ .
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 22 245677788888888888664200 00 000000011111122368899998 88899999755 4
Q ss_pred eEEEEEcCC--cceeeEeecCCCCCEEEEEEccCC---C---EEEEEeCCCcEEEEEcC
Q 001403 950 HLAIYEAEE--LTCLKQWFPISSVPISQATFSCDC---R---MVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 950 ~i~vwd~~~--~~~~~~~~~~h~~~v~~l~fs~dg---~---~l~t~~~dg~i~vwd~~ 1000 (1084)
.|.||-... .+........|...|.+|+|-++. . +|++++-.|.+.+|++.
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 566665543 221111112356789999998743 2 78889999999998883
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=89.95 E-value=33 Score=37.46 Aligned_cols=151 Identities=11% Similarity=0.111 Sum_probs=86.2
Q ss_pred CCCCccEEEecC-CCCEEEEEeCCe------EEEEEcCC--c--eeE-----EEEcCCCC--------CeEEEEEcCCCC
Q 001403 793 SQEAVPCFALSK-NDAYLFSASGGV------ISLYIVMT--F--KTI-----LTIMPPSP--------TATSLAFNPHDN 848 (1084)
Q Consensus 793 ~~~~v~~l~~s~-dg~~l~~~sdg~------i~vwd~~~--~--~~~-----~~~~~~~~--------~i~~l~~s~~d~ 848 (1084)
.-+.++.+.+.+ ++++++..++|. +..+++.. + ..+ ..+....+ ..-++++.+ ++
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG 96 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence 345678899985 555655555565 55555432 1 111 11222221 344788866 78
Q ss_pred cEEEEEeCC------CeEEEEEcCCceeeeeec---------------ccccCEEEEEEcCCCCEEEEEeC-----CC--
Q 001403 849 NVIAIGMDD------STILIYNARSSEVISKLE---------------GHSKRVTGLVFSDALNILVSSGG-----DA-- 900 (1084)
Q Consensus 849 ~~la~g~~d------g~i~iwd~~~~~~~~~l~---------------~h~~~V~~l~~spd~~~l~s~s~-----dg-- 900 (1084)
.++++--.+ ..|+.++.. |+.+..+. ......-+|+++|||+.|.++.. |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 888877777 788888876 65544331 13456889999999996665543 22
Q ss_pred c-------EEEEeCC--C-CceeeeeeeecCC-CCccCCCCceEEEEccCCCEEEE
Q 001403 901 Q-------IFVWDVD--G-WGIQTCRSLQTPD-GVMTLAPSETHIQFHKDQTRFLL 945 (1084)
Q Consensus 901 ~-------I~iwd~~--~-~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~dg~~la~ 945 (1084)
. ++++... + +.......+.... ........++.+.+-+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 4555444 3 2122222222221 00001236899999999998887
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=89.94 E-value=25 Score=35.95 Aligned_cols=233 Identities=11% Similarity=0.048 Sum_probs=133.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
..-..|+-+|||..-.++...+.|---|..+|+... .--+....-..|..-|||. .-++-+.. -|.-.|.++.+
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~---ypLg~Ga~Phgiv~gpdg~--~Witd~~~-aI~R~dpkt~e 135 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVET---YPLGSGASPHGIVVGPDGS--AWITDTGL-AIGRLDPKTLE 135 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEE---EecCCCCCCceEEECCCCC--eeEecCcc-eeEEecCcccc
Confidence 344568889999888888888888888888887433 1113334455677888887 44443322 45555665554
Q ss_pred ee-eEe--ccCCCcEEEEeecccCCCcEEEEEecC---------CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEE
Q 001403 469 RT-YSF--EGHGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 536 (1084)
Q Consensus 469 ~~-~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l 536 (1084)
.. ..+ +.-........| ++.|.+-+++... +.|++|+.. .+..-..|+..|||..-
T Consensus 136 vt~f~lp~~~a~~nlet~vf--D~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvw 203 (353)
T COG4257 136 VTRFPLPLEHADANLETAVF--DPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVW 203 (353)
T ss_pred eEEeecccccCCCcccceee--CCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEE
Confidence 32 112 222345556666 5566677766421 234444322 23356788999999987
Q ss_pred EEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCC
Q 001403 537 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 616 (1084)
Q Consensus 537 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 616 (1084)
++.-. .+.|-..|..++.. ..+............+.-+|.+..-++....+.+..+|..+.. -......+....
T Consensus 204 yasla----gnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~ar 277 (353)
T COG4257 204 YASLA----GNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKAR 277 (353)
T ss_pred EEecc----ccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCC
Confidence 77443 44577777766632 2222222101334555566778777887777888888877655 334444444444
Q ss_pred cceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 617 NPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 617 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
-.++.....++.-.+--..|.|.-+|..+
T Consensus 278 pys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 278 PYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred cceeeeccCCcEEeeccccCceeecCccc
Confidence 45555555554444333344555455443
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=89.90 E-value=22 Score=39.75 Aligned_cols=202 Identities=14% Similarity=0.129 Sum_probs=107.6
Q ss_pred EEEEEeCCCeEEEEEcCCceeeeeeccc--ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccC
Q 001403 850 VIAIGMDDSTILIYNARSSEVISKLEGH--SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 927 (1084)
Q Consensus 850 ~la~g~~dg~i~iwd~~~~~~~~~l~~h--~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 927 (1084)
.+.++..+|.|.-.|..+++.+.....- ...+..-.+..+|+ +..++.++.+..+|..+|+..-...... .
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~---~--- 142 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG---S--- 142 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC---C---
Confidence 4455677888888888888765433211 12233333333666 6667888888889987777544333332 0
Q ss_pred CCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCC--CCCEEEEEEccCCCEEEEEeC--CCcEEEEEcCCCc
Q 001403 928 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFV--DGTLSIHEASNLE 1003 (1084)
Q Consensus 928 ~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~--dg~i~vwd~~~~~ 1003 (1084)
..+....+-.++..++...++.+.-.+..+|+........- ...+..-....++. ++.+.. ++.+.-.|..+|.
T Consensus 143 -~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 143 -PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred -eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCCCcceEEEEEccCCc
Confidence 01223334444544444456777777777777655532211 11111111123343 444444 5677778888888
Q ss_pred eeEEeccccccCCCCc--ccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCCCcccCCC
Q 001403 1004 VQCRILSTAYLRPTTS--CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPP 1064 (1084)
Q Consensus 1004 ~~~~~~~~~~~~~~~~--~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~ 1064 (1084)
...............- ...+..-.+-. +..+..++.+|.+...+...-+..|....+
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v----~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYV----DGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEE----CCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 8766431111111100 00111111211 234467777888888888888888888665
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=89.88 E-value=18 Score=39.57 Aligned_cols=163 Identities=13% Similarity=0.106 Sum_probs=90.6
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCe------EEEEEcCC--c--eee-----eeeccccc--------CEEEEEEcCCCCE
Q 001403 836 PTATSLAFNPHDNNVIAIGMDDST------ILIYNARS--S--EVI-----SKLEGHSK--------RVTGLVFSDALNI 892 (1084)
Q Consensus 836 ~~i~~l~~s~~d~~~la~g~~dg~------i~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~spd~~~ 892 (1084)
+.+..+.+.++++ .+++.+++|. ++.+++.. + ..+ ..+..-.+ ..-+|++.++|.+
T Consensus 20 GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 5678889987345 4555666776 66555543 1 011 11111111 3347888888888
Q ss_pred EEEEeCC------CcEEEEeCCCCceeeeeeeecCC-------CCccCCCCceEEEEccCCCEEEEE------eCC--e-
Q 001403 893 LVSSGGD------AQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLV------HET--H- 950 (1084)
Q Consensus 893 l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~dg~~la~~------~d~--~- 950 (1084)
+++.=.+ ..|..++.. |.......+...- ...........++++|||+.|.+. .|+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8887666 778888877 4432221111110 112233578999999999955442 222 1
Q ss_pred ------EEE--EEcCC-cceeeEe--ecC------CCCCEEEEEEccCCCEEEEEe-----CCCcEEEEEcC
Q 001403 951 ------LAI--YEAEE-LTCLKQW--FPI------SSVPISQATFSCDCRMVFTSF-----VDGTLSIHEAS 1000 (1084)
Q Consensus 951 ------i~v--wd~~~-~~~~~~~--~~~------h~~~v~~l~fs~dg~~l~t~~-----~dg~i~vwd~~ 1000 (1084)
+++ ||..+ ++...++ ... ....|+.+.+-+|+++|+.-= ....++|+.+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 444 45444 3222221 111 357889999999999776321 23456666544
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=89.59 E-value=18 Score=35.80 Aligned_cols=146 Identities=13% Similarity=0.160 Sum_probs=87.0
Q ss_pred cEEEEEeCCCeEEEEEcCC--ceeeeeecccccCEEEEEEcCCCCEEEEEeCCC------cEEE---EeCCCCceeeeee
Q 001403 849 NVIAIGMDDSTILIYNARS--SEVISKLEGHSKRVTGLVFSDALNILVSSGGDA------QIFV---WDVDGWGIQTCRS 917 (1084)
Q Consensus 849 ~~la~g~~dg~i~iwd~~~--~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg------~I~i---wd~~~~~~~~~~~ 917 (1084)
..|..+...+.|.+|++.. .+.+.++.. -+.|..+.++..|++|+|-=.+. .+|+ |+....+.....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~- 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR- 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE-
Confidence 4554456677899999983 455666664 37899999999999999864322 4555 444421111100
Q ss_pred eecCCCC------------------ccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcce-ee-----Ee---ecCC-
Q 001403 918 LQTPDGV------------------MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC-LK-----QW---FPIS- 969 (1084)
Q Consensus 918 ~~~~~~~------------------~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~-~~-----~~---~~~h- 969 (1084)
....|| ......+.+++..|-..-|++|.++++.+|.+..... .. .+ ...|
T Consensus 107 -vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 107 -VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred -EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 000110 0112367888888887778889999999998864433 11 00 0011
Q ss_pred -CCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001403 970 -SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 970 -~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~ 1000 (1084)
+-....++|. +.|+|..+ +-.+++..+.
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred cCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 2334555655 45888765 5577777653
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=89.50 E-value=32 Score=37.62 Aligned_cols=112 Identities=9% Similarity=-0.021 Sum_probs=55.4
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCcee-eeeeeecCCCCccCCCCceEEEEccCCCEEEEEe------CCeEEEEEc
Q 001403 889 ALNILVSSGGDA-----QIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH------ETHLAIYEA 956 (1084)
Q Consensus 889 d~~~l~s~s~dg-----~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~------d~~i~vwd~ 956 (1084)
++.+++.|+.++ .+..+|+.+.... ....+..+... .-...+..-++++.+.|. ...+..||.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~-----~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~ 146 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFT-----FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNL 146 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcC-----ccCceEEEECCEEEEEeCcCCCccCceEEEEcC
Confidence 567777777653 4666777664421 00111111111 011122223566666642 135888888
Q ss_pred CCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCc----EEEEEcCCCcee
Q 001403 957 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT----LSIHEASNLEVQ 1005 (1084)
Q Consensus 957 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~----i~vwd~~~~~~~ 1005 (1084)
.+.+-..........+....+...+++..+.|+.++. +.+||..+.+..
T Consensus 147 ~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 147 ETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 7654322110011122223334556777788876643 567888887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.50 E-value=19 Score=44.96 Aligned_cols=153 Identities=17% Similarity=0.180 Sum_probs=96.2
Q ss_pred CCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEc--------CCCCEEEEEeCCCcEEEEeCCCCceeeeee-
Q 001403 847 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS--------DALNILVSSGGDAQIFVWDVDGWGIQTCRS- 917 (1084)
Q Consensus 847 d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s--------pd~~~l~s~s~dg~I~iwd~~~~~~~~~~~- 917 (1084)
=++..+ +-|+.+.+|+.+++.....+.+-+..|..+..- |.=++|...+.--.|.++-+.-.+......
T Consensus 90 I~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 90 IGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred hcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccc
Confidence 344444 347789999999988788888877777776543 333455555555667777665433211110
Q ss_pred eecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEE--EEcCCc---c-ee----------------eEeecCCCCCEEE
Q 001403 918 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI--YEAEEL---T-CL----------------KQWFPISSVPISQ 975 (1084)
Q Consensus 918 ~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~v--wd~~~~---~-~~----------------~~~~~~h~~~v~~ 975 (1084)
+...-........|.++....+|+.+.+|.||.|+= |....| + |. ..+...+..+|..
T Consensus 168 f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q 247 (1311)
T KOG1900|consen 168 FNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ 247 (1311)
T ss_pred cccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence 000000001123588999999999999999995442 222221 1 10 1112245779999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCC
Q 001403 976 ATFSCDCRMVFTSFVDGTLSIHEASN 1001 (1084)
Q Consensus 976 l~fs~dg~~l~t~~~dg~i~vwd~~~ 1001 (1084)
++....-..|.+-++.|+|++|++.+
T Consensus 248 i~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 248 ITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eEeccccceeeeeccCceEEEEEccC
Confidence 99988888899999999999999998
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=89.43 E-value=50 Score=38.78 Aligned_cols=244 Identities=14% Similarity=0.175 Sum_probs=111.9
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCc-----cccce-eeeecCCCCCeEEEEEcC-----CCCEEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGAC-----SMLFK-TALVRDPGVSVNRVVWSP-----DGSLLG 404 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~-----~~~~~-~~~~~~h~~~V~~v~fsp-----dg~~la 404 (1084)
.-..++..|.|+.+|.+.++ +.+.|+-++.. ..... ...+ .....|..++|-. +...+|
T Consensus 45 ~G~~l~vDP~~R~i~v~a~e---------~~~~v~~l~~~~~~~~~~~~~~~~pi-~s~~~i~~~~FL~~~~~~~~p~la 114 (504)
T PF10433_consen 45 PGQYLAVDPSGRCIAVSAYE---------GNFLVYPLNRSLDSDIAFSPHINSPI-KSEGNILDMCFLHPSVGYDNPTLA 114 (504)
T ss_dssp T--EEEE-TTSSEEEEEEBT---------TEEEEEE-SS----T-TT---EEEE---S-SEEEEEEEES---S-SS-EEE
T ss_pred CCcEEEECCcCCEEEEEecC---------CeEEEEEecccccccccccccccccc-cCCceEEEEEEEecccCCCCceEE
Confidence 45579999999999999888 89999998771 00000 0011 1256778888875 344555
Q ss_pred EEe--CCC--EEEEEEccCCccccc---eeeee-----cccccEeEEEee-cCCCcEEEEEEeCCCcEEEEECCC--C-c
Q 001403 405 VAY--SKH--IVQLYAYHGGSDARQ---QLEID-----AHVGNVNDLAFS-APCKQISVITCGDDKTIKVWDAVT--G-S 468 (1084)
Q Consensus 405 s~~--~dg--~v~iwd~~~~~~~~~---~~~l~-----~h~~~V~~l~~s-~d~~~l~l~s~~~d~~i~vwd~~~--g-~ 468 (1084)
.-. ..+ .+..+++.....+.. ..... .+..+..-+..- |.|- +++ ++ ++.+.+-+... + .
T Consensus 115 ~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~gg--llV-~~-~~~i~y~~~~~~~~~~ 190 (504)
T PF10433_consen 115 ILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPGG--LLV-GG-ENIIIYKNHLIGSGDY 190 (504)
T ss_dssp EEEEETT-EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT-S--EEE-EE-SSEEEEEE------TT
T ss_pred EEEEEecccceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCcE--EEE-EC-CEEEEEeccccccccc
Confidence 532 222 244444332221110 00111 111222222221 2233 344 33 33333333221 1 1
Q ss_pred eeeEecc----CCCcEEEEee-----cccCCCcEEEEEecCCeEEEEECCCCCc--eEeecCC-CCeEEEEEEcCCC-CE
Q 001403 469 RTYSFEG----HGAPVYSLCP-----HAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAP-GLGCTRMAYSANG-RR 535 (1084)
Q Consensus 469 ~~~~~~~----h~~~v~~~~~-----~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~-~~~i~~~~~s~d~-~~ 535 (1084)
....+.. ...-+.+... ....++..++.+..+|.+....+..... ....-+. .....++++..+| .+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~ 270 (504)
T PF10433_consen 191 SFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDY 270 (504)
T ss_dssp EEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--E
T ss_pred ccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEE
Confidence 1122221 1222333322 1245667899999999998877765442 1222122 3344566666655 46
Q ss_pred EEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCC----CC------EEEEEE---CCCcEEEEEC
Q 001403 536 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA----KD------QILAAG---DDHVIKIWDM 599 (1084)
Q Consensus 536 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~------~l~~~~---~dg~i~iwd~ 599 (1084)
+++++.. |++.+..|....-+.+..+.... +|..+++.+. .. .+++++ .+|.+++..-
T Consensus 271 lf~gs~~--gds~l~~~~~~~l~~~~~~~N~~----Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~ 341 (504)
T PF10433_consen 271 LFVGSEF--GDSQLLQISLSNLEVLDSLPNWG----PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN 341 (504)
T ss_dssp EEEEESS--S-EEEEEEESESEEEEEEE--------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE
T ss_pred EEEEEec--CCcEEEEEeCCCcEEEEeccCcC----CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec
Confidence 6666653 46778888866666777776544 8888877532 22 566654 5678887753
|
... |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.36 E-value=17 Score=40.30 Aligned_cols=150 Identities=9% Similarity=0.085 Sum_probs=90.3
Q ss_pred EeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccC------CCcEEEEEecCCeEEEEECCCCCc
Q 001403 440 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE------NIHFIFSISVDGKIKAWLYDSLGA 513 (1084)
Q Consensus 440 ~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~s~dg~i~iwd~~~~~~ 513 (1084)
-...+...+++..|+....+.--|++.|+.+.++.-|...| +.|.|.. +.+.|+-.|..+..+ .|.+....
T Consensus 473 mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS~~svFr-IDPR~~gN 549 (776)
T COG5167 473 MLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLSDYSVFR-IDPRARGN 549 (776)
T ss_pred eeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeecccceEE-ecccccCC
Confidence 33334444466677777788888999999999998887764 3333321 223455445444443 45544433
Q ss_pred eEeecCCCCeEEEEEE----cCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE
Q 001403 514 RVDYDAPGLGCTRMAY----SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 589 (1084)
Q Consensus 514 ~~~~~~~~~~i~~~~~----s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 589 (1084)
.........-.+.-.| ....-++++++..+ -|++||.-..+....+++.. ..|..+..+.+|+++++.+
T Consensus 550 Ki~v~esKdY~tKn~Fss~~tTesGyIa~as~kG----DirLyDRig~rAKtalP~lG---~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 550 KIKVVESKDYKTKNKFSSGMTTESGYIAAASRKG----DIRLYDRIGKRAKTALPGLG---DAIKHIDVTANGKHILATC 622 (776)
T ss_pred ceeeeeehhccccccccccccccCceEEEecCCC----ceeeehhhcchhhhcCcccc---cceeeeEeecCCcEEEEee
Confidence 2222211111222222 23455788887633 39999976555555566655 7899999999999998877
Q ss_pred CCCcEEEEECC
Q 001403 590 DDHVIKIWDMN 600 (1084)
Q Consensus 590 ~dg~i~iwd~~ 600 (1084)
. ..+.+-|+.
T Consensus 623 k-~yllL~d~~ 632 (776)
T COG5167 623 K-NYLLLTDVP 632 (776)
T ss_pred c-ceEEEEecc
Confidence 5 455555543
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=89.27 E-value=67 Score=39.95 Aligned_cols=174 Identities=16% Similarity=0.168 Sum_probs=102.0
Q ss_pred CCCCccEEEec---C----CCCEEEEEeCCeEEEEEcCCc---------------eeEEEEcC---CCCCeEEEEEcCCC
Q 001403 793 SQEAVPCFALS---K----NDAYLFSASGGVISLYIVMTF---------------KTILTIMP---PSPTATSLAFNPHD 847 (1084)
Q Consensus 793 ~~~~v~~l~~s---~----dg~~l~~~sdg~i~vwd~~~~---------------~~~~~~~~---~~~~i~~l~~s~~d 847 (1084)
...+|..|+|+ . ..++|++-....+.|+...-. ..+.++.. .......++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 46678888887 2 235777777777777772211 12223321 12345677777766
Q ss_pred CcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccC
Q 001403 848 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 927 (1084)
Q Consensus 848 ~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 927 (1084)
.+.||+.+..|...||++..+... +.. .+-+.....|.| +.|... +
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~-----~~~-----------~~~~~~~~~gsi-~~d~~e--------------~--- 203 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKR-----KSS-----------NLRLSRNISGSI-IFDPEE--------------L--- 203 (765)
T ss_pred cceEEEEeccCcEEEEEecccccc-----CCc-----------ceeeccCCCccc-cCCCcc--------------c---
Confidence 677777777777777777211100 000 111111222323 222221 0
Q ss_pred CCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceee-EeecCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCC
Q 001403 928 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-QWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 928 ~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~-~~~~~h~~~v~~l~fs~dg-~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
..-..+.|.++...|++.....+.++|+.+..... .........|..+.-+++. .+++.- +...|...++...
T Consensus 204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKSS 278 (765)
T ss_pred -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccCC
Confidence 13457889999999999999999999999877644 2233346789999988872 222222 3357888888874
|
These proteins are found in fungi. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=88.98 E-value=1.4 Score=30.60 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCC--cEEEEEeCCCeEEEEEcCC
Q 001403 836 PTATSLAFNPHDN--NVIAIGMDDSTILIYNARS 867 (1084)
Q Consensus 836 ~~i~~l~~s~~d~--~~la~g~~dg~i~iwd~~~ 867 (1084)
+.+.++.|||..+ .+|+..-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998555 6999999999999999985
|
It contains a characteristic DLL sequence motif. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=88.89 E-value=44 Score=37.42 Aligned_cols=150 Identities=10% Similarity=-0.005 Sum_probs=82.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcc
Q 001403 881 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT 960 (1084)
Q Consensus 881 V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~ 960 (1084)
...+..++||.+++.+..-..++-||-.... ...+.... ...++.+.|.+++.+++++..|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~---W~~~~~~~-----~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY---WQPHNRAS-----ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcc---eEEecCCC-----ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence 4456677888777765443333334433200 01111111 12578999999999999987777544 344443
Q ss_pred -----eeeEeecC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCC
Q 001403 961 -----CLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1034 (1084)
Q Consensus 961 -----~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1034 (1084)
........ ....+.++.|.+|+..+++ +.+|.+.... +.|+--.+......++. ..| .+.|.+
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~-----~ly--~v~f~~-- 380 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGGKSWKRDKGADNIAA-----NLY--SVKFFD-- 380 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCCcceeEccccCCCCc-----cee--EEEEcC--
Confidence 12221111 1245899999988876665 5788777664 44433222211111122 244 566764
Q ss_pred CCEEEEEeCCCcEEEE
Q 001403 1035 PTQFAVGLTNGEVYVI 1050 (1084)
Q Consensus 1035 ~~~l~~~~~dg~v~vw 1050 (1084)
++...+.+.+|.|.-|
T Consensus 381 ~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 381 DKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCceEEEeCCcEEEEe
Confidence 3566667788887765
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=88.72 E-value=19 Score=36.87 Aligned_cols=147 Identities=11% Similarity=0.060 Sum_probs=79.0
Q ss_pred EEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC---ceEeeeeeccccccCceEEEEEcCC
Q 001403 505 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQLQHNSVSVVHFDTA 581 (1084)
Q Consensus 505 iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~~~~~v~~~~~s~~ 581 (1084)
+||+.+.+...........+.+-++-+||+++.+++. .+|...+++++..+ ..........-.....--++..-||
T Consensus 50 ~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 50 EYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 5777665543332333334555567789988888774 34566688887654 1111111000000123334556689
Q ss_pred CCEEEEEECCC-cEEEEECCC--CeEEEE--Ec---CCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeecc
Q 001403 582 KDQILAAGDDH-VIKIWDMNK--VQLLTT--ID---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 653 (1084)
Q Consensus 582 ~~~l~~~~~dg-~i~iwd~~~--~~~~~~--~~---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 653 (1084)
|+.|+.|+... +..+|.... ...... +. ......--..+...|+|++++.+..+ -.|||..+++.+..+.
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLP 206 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCC
Confidence 99999988664 344555421 111111 11 01111123467778999999888764 4566888776655554
Q ss_pred c
Q 001403 654 V 654 (1084)
Q Consensus 654 ~ 654 (1084)
.
T Consensus 207 ~ 207 (243)
T PF07250_consen 207 D 207 (243)
T ss_pred C
Confidence 3
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.72 E-value=42 Score=36.90 Aligned_cols=141 Identities=14% Similarity=0.097 Sum_probs=82.6
Q ss_pred EEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee---
Q 001403 394 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT--- 470 (1084)
Q Consensus 394 v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~--- 470 (1084)
+-|....+.| .+...|.+.=|.+.....-.....-....++|.++.||+|.+ .++.--.|++|.+.+....+..
T Consensus 28 vFfDDaNkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk--ilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 28 VFFDDANKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK--ILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred eeeccCcceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc--eEEEEecCceEEEEecCCCchhhHH
Confidence 4444333333 333444466666554322111111123456999999999999 8999999999999997433322
Q ss_pred -eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc-eEeecCCCCeEEEEEEcCCCCEEEEEee
Q 001403 471 -YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 471 -~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 541 (1084)
++.+.....|...+|..+ .-++..+..| +.+|....... ....+.+...|.-..|.++.+.++.++.
T Consensus 105 ~~~ck~k~~~IlGF~W~~s---~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS---TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred HHHhccCcceeEEEEEecC---eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 223333445777777543 3344444444 45555544332 3334556667888889999888776653
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=88.65 E-value=1.6 Score=30.43 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=26.6
Q ss_pred CCeEEEEEcCC-C--CEEEEEeCCCEEEEEEccCC
Q 001403 389 VSVNRVVWSPD-G--SLLGVAYSKHIVQLYAYHGG 420 (1084)
Q Consensus 389 ~~V~~v~fspd-g--~~las~~~dg~v~iwd~~~~ 420 (1084)
+.|.++.|||+ + .+||..-..|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 36889999984 4 58998888899999999853
|
It contains a characteristic DLL sequence motif. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=88.63 E-value=46 Score=37.30 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=19.8
Q ss_pred EEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC
Q 001403 594 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 635 (1084)
Q Consensus 594 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 635 (1084)
+.+||..+.+....-..... .....+..-+++++++|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCCC
Confidence 45788877654432222111 11223344456677777653
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=88.26 E-value=57 Score=37.88 Aligned_cols=193 Identities=12% Similarity=0.146 Sum_probs=88.8
Q ss_pred EEEEEE---eCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCe-
Q 001403 448 ISVITC---GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG- 523 (1084)
Q Consensus 448 l~l~s~---~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~- 523 (1084)
+++++. ...+...+.| ..|.....+......... |...++|.+++... +.+..+|+. ++...........
T Consensus 116 l~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~ 189 (477)
T PF05935_consen 116 LYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNS--FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYY 189 (477)
T ss_dssp EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SS--EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE
T ss_pred EEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccce--eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCccc
Confidence 355555 2345566666 456555444322111111 22245666665544 677777775 3333333333321
Q ss_pred --EEEEEEcCCCCEEEEEee---------CCCCCeeEEEecCCCceEeeeeecccc----------------------c-
Q 001403 524 --CTRMAYSANGRRLFSCGT---------SKEGESFLVEWNESEGAIKRTYQGLQL----------------------Q- 569 (1084)
Q Consensus 524 --i~~~~~s~d~~~l~~~~~---------~~~~~~~i~~wd~~~~~~~~~~~~~~~----------------------~- 569 (1084)
=..+...|+|++|+.+.. ...-.-.|..+| .+|+.+..+..... .
T Consensus 190 ~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~ 268 (477)
T PF05935_consen 190 DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR 268 (477)
T ss_dssp -B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCC
Confidence 234667799999988772 111122366667 77777655432110 0
Q ss_pred -cCceEEEEEcCCCCEEEEEEC-CCcEEEEECCCCeEEEEEcCCCCCCCc-ceEEEec------------------CCCE
Q 001403 570 -HNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPEN-PRICFNK------------------NGTL 628 (1084)
Q Consensus 570 -~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~v~~s~------------------~~~~ 628 (1084)
=-.+.++.+.+....|+..+. -..|...|..+++....+..+.....- ....+.| -|++
T Consensus 269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH 348 (477)
T PF05935_consen 269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQH 348 (477)
T ss_dssp BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-E
T ss_pred CccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCccccccc
Confidence 024788999885555555554 558999999999998888665432211 1111111 2455
Q ss_pred EEEEECCC---eEEEEEcCCCC
Q 001403 629 LAVIANEN---RIKILETPESN 647 (1084)
Q Consensus 629 l~~~~~dg---~i~iwd~~~~~ 647 (1084)
-+.-..+| .|.++|-...+
T Consensus 349 ~~~~~~~g~~~~l~vFDNg~~r 370 (477)
T PF05935_consen 349 TAHLIPDGPQGNLLVFDNGNGR 370 (477)
T ss_dssp EEEE-TTS---SEEEEE--TTG
T ss_pred ceEEcCCCCeEEEEEEECCCCC
Confidence 56666666 78888766553
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=87.76 E-value=36 Score=44.04 Aligned_cols=135 Identities=13% Similarity=0.066 Sum_probs=81.3
Q ss_pred EEeCCCeEEEEEcCCce-------eeeeec---------ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 001403 853 IGMDDSTILIYNARSSE-------VISKLE---------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 916 (1084)
Q Consensus 853 ~g~~dg~i~iwd~~~~~-------~~~~l~---------~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~ 916 (1084)
+|-.||.|.-||-.+.. -+..|+ -..+.|..+.+++...-++-+. +..+.+=- .........
T Consensus 618 v~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~-~~~~a~~~-~r~~~e~G~ 695 (1774)
T PF11725_consen 618 VGLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGD-NNVFALPQ-RRNKVELGD 695 (1774)
T ss_pred eeeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCC-Cccccccc-ccCCCCCCc
Confidence 35568999999976421 111111 1346677777777665555432 22122100 111111222
Q ss_pred eeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 001403 917 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 996 (1084)
Q Consensus 917 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~v 996 (1084)
.+...+ . ..|+.++.-.+.++++....|.+.... ..+..+..-..+-.+.|..++......+.+ -..+|.++-
T Consensus 696 ~l~Gl~-~----~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~nL~A-lt~~G~Lf~ 768 (1774)
T PF11725_consen 696 ALEGLE-D----RVITAFAVVNDNKFVALDDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQNLYA-LTSTGELFR 768 (1774)
T ss_pred cccCCC-c----CcceeEEEEcCCceEEeccCCcccccc-CCCCCccCCCCCCCcchhheeeccccceeE-ecCCCceee
Confidence 344443 1 358999999999999998889999988 667755544445578999999988765555 456777654
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=87.06 E-value=49 Score=38.39 Aligned_cols=147 Identities=13% Similarity=0.099 Sum_probs=74.2
Q ss_pred CCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEE
Q 001403 856 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 935 (1084)
Q Consensus 856 ~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 935 (1084)
..+...++|.. |..+..+.........+.+.++|.+++..+ ..++.+|+... ......+.. +... .-..+.
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~~~l~~--~~~~---~HHD~~ 196 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGK-VIWEYDLPG--GYYD---FHHDID 196 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--T--TEE----B-S-EE
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCC-EEEeeecCC--cccc---cccccE
Confidence 34566666643 555555443222221266778999888665 77888888753 222222221 1100 012577
Q ss_pred EccCCCEEEEEe--------------CCeEEEEEcCCcceeeEeecC-C-------------------------CCCEEE
Q 001403 936 FHKDQTRFLLVH--------------ETHLAIYEAEELTCLKQWFPI-S-------------------------SVPISQ 975 (1084)
Q Consensus 936 ~s~dg~~la~~~--------------d~~i~vwd~~~~~~~~~~~~~-h-------------------------~~~v~~ 975 (1084)
.-|+|.+|+.+. +..|..+| .+|+.+..+... | =-.+.+
T Consensus 197 ~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns 275 (477)
T PF05935_consen 197 ELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS 275 (477)
T ss_dssp E-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred ECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCc
Confidence 889999988754 23466677 777776664221 1 135788
Q ss_pred EEEcc-CCCEEEEEeCCCcEEEEEcCCCceeEEecccc
Q 001403 976 ATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1012 (1084)
Q Consensus 976 l~fs~-dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~ 1012 (1084)
+.+.+ ++..|+++=.-..|...|..++++...+....
T Consensus 276 i~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 276 IDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp EEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred cEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 99988 55555554334488889999999988777543
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=86.79 E-value=2.6 Score=42.70 Aligned_cols=74 Identities=9% Similarity=0.104 Sum_probs=52.1
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceeeee-e-eecCCCC----ccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCc
Q 001403 886 FSDALNILVSSGGDAQIFVWDVDGWGIQTCR-S-LQTPDGV----MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 959 (1084)
Q Consensus 886 ~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~-~-~~~~~~~----~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~ 959 (1084)
+..++.+|+..+.+|.+++||+.+++..... . ....... ......|..+.++.+|.-+++-++|..+.|+..-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999997644322 1 1111110 02234789999999999988877888999987633
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=86.60 E-value=56 Score=36.04 Aligned_cols=113 Identities=7% Similarity=0.018 Sum_probs=53.8
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eC-----------CeE
Q 001403 889 ALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE-----------THL 951 (1084)
Q Consensus 889 d~~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d-----------~~i 951 (1084)
++++++.||.+ ..+.+||..+.+-.. +................+..-++++.+.| .+ ..+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~---~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTF---LTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEE---eccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceE
Confidence 56777777754 347788887754222 21110000000112223334456665553 22 247
Q ss_pred EEEEcCCcceeeEeecC--CCCCE-EEEEEccCCCEEEEEeCC-------------CcEEEEEcCCCcee
Q 001403 952 AIYEAEELTCLKQWFPI--SSVPI-SQATFSCDCRMVFTSFVD-------------GTLSIHEASNLEVQ 1005 (1084)
Q Consensus 952 ~vwd~~~~~~~~~~~~~--h~~~v-~~l~fs~dg~~l~t~~~d-------------g~i~vwd~~~~~~~ 1005 (1084)
.+||..+.+=......+ ...+. .+++ ..+++.++.++.+ ..+.+||..+.+..
T Consensus 162 ~~yd~~~~~W~~l~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 162 EAYNIADGKWVQLPDPGENFEKRGGAGFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred EEEECCCCeEeeCCCCCCCCCCCCcceEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence 78888765432211100 01111 1122 2356666655432 45888898887665
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=86.24 E-value=4.7 Score=40.89 Aligned_cols=75 Identities=9% Similarity=-0.062 Sum_probs=56.9
Q ss_pred EEEccCCCEEEE-EeCCeEEEEEcCCcceeeEe------ec-------CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001403 934 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW------FP-------ISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 999 (1084)
Q Consensus 934 ~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~------~~-------~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~ 999 (1084)
+.+..++.+|++ ..+|.+++||+.+++.+... .. .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 345567777766 79999999999998876542 21 2457889999999998887764 689999999
Q ss_pred CCCceeEEec
Q 001403 1000 SNLEVQCRIL 1009 (1084)
Q Consensus 1000 ~~~~~~~~~~ 1009 (1084)
+-+..+....
T Consensus 95 ~L~~W~~vsd 104 (219)
T PF07569_consen 95 DLGCWIRVSD 104 (219)
T ss_pred ccceeEEecc
Confidence 9887765444
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.11 E-value=11 Score=36.56 Aligned_cols=107 Identities=13% Similarity=0.050 Sum_probs=64.3
Q ss_pred CCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEE-EECCCcEEEEECCCCeEEEEEcC
Q 001403 532 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDA 610 (1084)
Q Consensus 532 d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~ 610 (1084)
+|.++.+.+. -|...|++||+.+|+.+..-.-.. ..+..--...-+..+.. .-.+|.-.++|.++-+.+..+..
T Consensus 55 ~g~i~esTG~--yg~S~ir~~~L~~gq~~~s~~l~~---~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 55 DGHILESTGL--YGFSKIRVSDLTTGQEIFSEKLAP---DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY 129 (262)
T ss_pred CCEEEEeccc--cccceeEEEeccCceEEEEeecCC---ccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc
Confidence 4555555443 446779999999998876554331 11211111222344433 44688899999999888887765
Q ss_pred CCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCe
Q 001403 611 GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 648 (1084)
Q Consensus 611 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 648 (1084)
.+.. -....|+..|+.+.....++.-|.++-..
T Consensus 130 ~GeG-----WgLt~d~~~LimsdGsatL~frdP~tfa~ 162 (262)
T COG3823 130 EGEG-----WGLTSDDKNLIMSDGSATLQFRDPKTFAE 162 (262)
T ss_pred CCcc-----eeeecCCcceEeeCCceEEEecCHHHhhh
Confidence 5442 23344666677766666677666655433
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.09 E-value=12 Score=47.21 Aligned_cols=69 Identities=10% Similarity=0.133 Sum_probs=45.4
Q ss_pred CceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 001403 930 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1004 (1084)
Q Consensus 930 ~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~ 1004 (1084)
.+.+..+...+..+.....+.+-+|+.........+...+. ..+.++..++++..||.+..||...|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQ------LESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccc------cCccCCceEEEEEecCCEEeeecCCCce
Confidence 34445555555555555566666666554444443332221 1288999999999999999999999866
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.92 E-value=20 Score=39.79 Aligned_cols=142 Identities=15% Similarity=0.222 Sum_probs=88.3
Q ss_pred CCCCEEEEEe--CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCC-------CCcEEEEEeCCCeEEEEEcCC-ceeeee
Q 001403 804 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH-------DNNVIAIGMDDSTILIYNARS-SEVISK 873 (1084)
Q Consensus 804 ~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~-------d~~~la~g~~dg~i~iwd~~~-~~~~~~ 873 (1084)
.|...|...+ ...+.-.|++.|+.+.....|... -+.|.|. +.+.|+ |-.+..|.-.|..- |..+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceee
Confidence 3444444443 366888888999999888876654 4667662 223444 55555555555543 322221
Q ss_pred ecccccCEEEEEEc----CCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCC
Q 001403 874 LEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 949 (1084)
Q Consensus 874 l~~h~~~V~~l~~s----pd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~ 949 (1084)
.. ....++.-.|| -...++|.+|.-|-|++||--....++ .+. .....|..+..+.+|+++++....
T Consensus 554 ~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKt--alP------~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 554 VE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKT--ALP------GLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred ee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhh--cCc------ccccceeeeEeecCCcEEEEeecc
Confidence 11 12223333333 245799999999999999976522111 111 122368899999999999998888
Q ss_pred eEEEEEcC
Q 001403 950 HLAIYEAE 957 (1084)
Q Consensus 950 ~i~vwd~~ 957 (1084)
.+.+-|+.
T Consensus 625 yllL~d~~ 632 (776)
T COG5167 625 YLLLTDVP 632 (776)
T ss_pred eEEEEecc
Confidence 99888874
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.99 E-value=51 Score=34.16 Aligned_cols=72 Identities=13% Similarity=0.077 Sum_probs=44.9
Q ss_pred CceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 571 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 571 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
+-+..+.++ +++...+..+.-++|.|+.+...-..+..-... -..-.+.-.|++..++.-+.-+.+.|+.+.
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~--gyaygv~vsGn~aYVadlddgfLivdvsdp 158 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD--GYAYGVYVSGNYAYVADLDDGFLIVDVSDP 158 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCC--ceEEEEEecCCEEEEeeccCcEEEEECCCC
Confidence 345566665 457788888889999999875433322111000 122333445888888886777888888765
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=84.97 E-value=66 Score=35.42 Aligned_cols=188 Identities=13% Similarity=0.142 Sum_probs=102.3
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeec--ccCCCcE--EEEEe-cC---CeEEEEECCCCCceE-eecC
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHF--IFSIS-VD---GKIKAWLYDSLGARV-DYDA 519 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~--~~~~~~~--l~s~s-~d---g~i~iwd~~~~~~~~-~~~~ 519 (1084)
+++...+++-+.+||+ .|+.++.+. .+.++.+... ..-+|.. |+.++ .+ ..|++|.++...... .+..
T Consensus 70 lIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 6777777888999995 566666664 2334433221 1112222 33443 32 469999887533322 2221
Q ss_pred -------CCCeEEEEEEc--C-CCCEEEEEeeCCCCCeeEEEecCC---Cc----eEeeeeeccccccCceEEEEEcCCC
Q 001403 520 -------PGLGCTRMAYS--A-NGRRLFSCGTSKEGESFLVEWNES---EG----AIKRTYQGLQLQHNSVSVVHFDTAK 582 (1084)
Q Consensus 520 -------~~~~i~~~~~s--~-d~~~l~~~~~~~~~~~~i~~wd~~---~~----~~~~~~~~~~~~~~~v~~~~~s~~~ 582 (1084)
....++.+|+. + +|.+.+.... + ++.+..|.+. .+ +.++.|.... .+..|......
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k--~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s----Q~EGCVVDDe~ 219 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-K--DGRVEQYELTDDGDGKVSATLVREFKVGS----QPEGCVVDDET 219 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-T--TSEEEEEEEEE-TTSSEEEEEEEEEE-SS-----EEEEEEETTT
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec-C--CceEEEEEEEeCCCCcEeeEEEEEecCCC----cceEEEEeccc
Confidence 11246667763 3 4665555443 2 3446555443 33 4577776543 78889999888
Q ss_pred CEEEEEECCCcEEEEECCC-----CeEEEEEcCCCCCCCcceEEEec--CCC-EEEEEE-CCCeEEEEEcCCC
Q 001403 583 DQILAAGDDHVIKIWDMNK-----VQLLTTIDAGGGLPENPRICFNK--NGT-LLAVIA-NENRIKILETPES 646 (1084)
Q Consensus 583 ~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s~--~~~-~l~~~~-~dg~i~iwd~~~~ 646 (1084)
.+|+.+-++.-|.-|+.+. +..+.......-...+-.+++-. +++ +|++.+ .+++..+|+....
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999998888888762 23333333322334566777643 433 444444 4778999998753
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=84.72 E-value=23 Score=40.15 Aligned_cols=112 Identities=11% Similarity=0.068 Sum_probs=61.2
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCC------CEEEEE--e---
Q 001403 879 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ------TRFLLV--H--- 947 (1084)
Q Consensus 879 ~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg------~~la~~--~--- 947 (1084)
...+.|+|.|||++|++--..|.|++++-.++.......+..... ....+....++|+|+- .+|.++ .
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~-~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVN-DAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceec-cCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 457889999999888876557999999866543221111111100 0012468899999884 344442 1
Q ss_pred ------CCeEEEEEcCCc--ce--eeEeecCC----CCCEEEEEEccCCCEEEEEeCC
Q 001403 948 ------ETHLAIYEAEEL--TC--LKQWFPIS----SVPISQATFSCDCRMVFTSFVD 991 (1084)
Q Consensus 948 ------d~~i~vwd~~~~--~~--~~~~~~~h----~~~v~~l~fs~dg~~l~t~~~d 991 (1084)
...|.-|.+... .. ...++.+- ...-..|+|.|||.++++.+..
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 223444544321 10 11111110 1124467899999877766654
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.63 E-value=19 Score=44.97 Aligned_cols=171 Identities=13% Similarity=0.206 Sum_probs=99.7
Q ss_pred ccCCCccceeeecccCCCCceEEEEcCCC-ceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEE-
Q 001403 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQ-HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV- 395 (1084)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg-~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~- 395 (1084)
.+..+|...+.... |...-..+-+-|.= +.=++ - |+.+.+|+.++...... +.+-+..|..|.
T Consensus 63 ~v~~IP~el~eq~~-~~~~~~~mGiFpeI~RaWiT--i---------Dn~L~lWny~~~~e~~~---~d~~shtIl~V~L 127 (1311)
T KOG1900|consen 63 QVVNIPDELLEQFS-NIECKTDMGIFPEIGRAWIT--I---------DNNLFLWNYESDNELAE---YDGLSHTILKVGL 127 (1311)
T ss_pred ccccCCHHHHHHhc-CcceeeeeccchhhcceEEE--e---------CCeEEEEEcCCCCcccc---ccchhhhheeeee
Confidence 44667766555555 44344445555532 22222 1 38899999988444322 444555565555
Q ss_pred -------EcCCCCEEEEEeCCCEEEEEEccCCccccce------eeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 396 -------WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ------LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 396 -------fspdg~~las~~~dg~v~iwd~~~~~~~~~~------~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
|-|.=+++.+...--.|.|+-+.-.+..... ..+......|+|+....+|+ +++ +|.|| .+|
T Consensus 128 vkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~dg--~ly 202 (1311)
T KOG1900|consen 128 VKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGRDG--NLY 202 (1311)
T ss_pred ecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eecCC--CEE
Confidence 3444456666655566777765433221111 12223355789999888888 555 55566 444
Q ss_pred EC----CCC---c-e----------------eeEec-cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCC
Q 001403 463 DA----VTG---S-R----------------TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 510 (1084)
Q Consensus 463 d~----~~g---~-~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 510 (1084)
.+ ..| + + +-.+. .+.++|..+.+. ..-..+++-+..|+|.+|++..
T Consensus 203 El~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID--~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 203 ELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID--NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec--cccceeeeeccCceEEEEEccC
Confidence 33 111 1 1 11223 567899999984 4446899999999999999875
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.47 E-value=24 Score=39.35 Aligned_cols=38 Identities=13% Similarity=0.280 Sum_probs=30.0
Q ss_pred ceEEEEEcCCC---CEEEEEECCCcEEEEECCCCeEEEEEc
Q 001403 572 SVSVVHFDTAK---DQILAAGDDHVIKIWDMNKVQLLTTID 609 (1084)
Q Consensus 572 ~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~ 609 (1084)
.+..++|+|+. .++..-+.|.+||+||......+....
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqp 207 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQP 207 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccC
Confidence 46677899875 788888999999999998776664443
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.44 E-value=0.18 Score=54.67 Aligned_cols=144 Identities=18% Similarity=0.177 Sum_probs=95.3
Q ss_pred EEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEE
Q 001403 731 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 810 (1084)
Q Consensus 731 ~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 810 (1084)
...+.+.+..++.++.+..+..||-.... .... ........+++..+|..++
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~-----------------------~le~-----n~tg~aldm~wDkegdvla 90 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQV-----------------------ILEL-----NPTGKALDMAWDKEGDVLA 90 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcce-----------------------eccc-----CCchhHhhhhhccccchhh
Confidence 45566777778888888777777633221 1110 1334455677877887776
Q ss_pred EEe--CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcC
Q 001403 811 SAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 888 (1084)
Q Consensus 811 ~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~sp 888 (1084)
... .+.+.+||+.+.....--.+....-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|...++++++.+
T Consensus 91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 654 58899999975432221111111122278999 889999999999999999888776665555999999999998
Q ss_pred CCCEEEEEeCCCcEEE
Q 001403 889 ALNILVSSGGDAQIFV 904 (1084)
Q Consensus 889 d~~~l~s~s~dg~I~i 904 (1084)
.+ +.+.++.|..+.+
T Consensus 170 Ed-~vil~dcd~~L~v 184 (615)
T KOG2247|consen 170 ED-YVILCDCDNTLSV 184 (615)
T ss_pred cc-eeeecCcHHHHHH
Confidence 75 4455555655443
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=84.28 E-value=89 Score=36.29 Aligned_cols=154 Identities=9% Similarity=-0.007 Sum_probs=72.7
Q ss_pred EEEEEeCC-----CcEEEEECCCCceee--EeccCCCcE--EEEeecccCCCcEEEEEecCC-----eEEEEECCCCCce
Q 001403 449 SVITCGDD-----KTIKVWDAVTGSRTY--SFEGHGAPV--YSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGAR 514 (1084)
Q Consensus 449 ~l~s~~~d-----~~i~vwd~~~g~~~~--~~~~h~~~v--~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~ 514 (1084)
+.+.|+.+ +.+.++|+.+.+-.. .+.....+. .+++. . ++++++.|+.++ .+..||+.+.+-.
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~--~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA--D-EENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE--E-CCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 45556544 357888988764322 110001111 11221 1 345666676543 3566776553321
Q ss_pred Eeec---CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeec--cccccCceEEEEEcCCCCEEEEEE
Q 001403 515 VDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTAKDQILAAG 589 (1084)
Q Consensus 515 ~~~~---~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~ 589 (1084)
.... .........+..-+++..+.++.++.....+.+||+.+.+....-.. .........++. -+++.++.|+
T Consensus 308 ~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~--~~~~iyv~GG 385 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA--VGKHIVIFGG 385 (470)
T ss_pred eCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE--ECCEEEEECC
Confidence 1110 00001111111235677776664432235589999988765433211 010011122222 3456667776
Q ss_pred CC--------------CcEEEEECCCCeEEEE
Q 001403 590 DD--------------HVIKIWDMNKVQLLTT 607 (1084)
Q Consensus 590 ~d--------------g~i~iwd~~~~~~~~~ 607 (1084)
.. ..+.+||..+.+....
T Consensus 386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 386 EIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred ccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 43 2478899988776543
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=84.06 E-value=70 Score=34.93 Aligned_cols=70 Identities=9% Similarity=-0.068 Sum_probs=35.0
Q ss_pred CCcEEEEEecC-----CeEEEEECCCCCceEeecCCC-CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE
Q 001403 490 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 559 (1084)
Q Consensus 490 ~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~ 559 (1084)
++.+.+.|+.. ..+..||+.+.+=...-..+. ......+...+++..+.++.+......+.+||+.+.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 34566666642 357777776543222111111 12222333456667777665332223367889887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=83.97 E-value=96 Score=36.45 Aligned_cols=80 Identities=9% Similarity=0.135 Sum_probs=47.9
Q ss_pred CCEEEEEeCCeEEEEEcCCceeEEEEcC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec-----cccc
Q 001403 806 DAYLFSASGGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-----GHSK 879 (1084)
Q Consensus 806 g~~l~~~sdg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~-----~h~~ 879 (1084)
+..++-.....|++.+...++....... ....|.+.+.. +..++.+..++.+..+.+.......... ....
T Consensus 418 ~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~---~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (504)
T PF10433_consen 418 DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAASIN---DPQVLVALSGGELVYFELDDNKISVSDNDETILELDN 494 (504)
T ss_dssp TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEEEES---SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS
T ss_pred CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEEEEC---CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCC
Confidence 5566666677799999888777766543 33456666664 3466777778899999888765542222 1457
Q ss_pred CEEEEEEcC
Q 001403 880 RVTGLVFSD 888 (1084)
Q Consensus 880 ~V~~l~~sp 888 (1084)
.|.|+...|
T Consensus 495 eis~l~i~p 503 (504)
T PF10433_consen 495 EISCLSIEP 503 (504)
T ss_dssp -EEEEE---
T ss_pred ceEEEEeCC
Confidence 788888765
|
... |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=83.83 E-value=85 Score=35.74 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=39.4
Q ss_pred cccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccccee---eeec-CCCCCeEEEEEcCCC
Q 001403 330 LIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKT---ALVR-DPGVSVNRVVWSPDG 400 (1084)
Q Consensus 330 l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~---~~~~-~h~~~V~~v~fspdg 400 (1084)
+...-+..+.|+|.|||++|++-... |.|++++..+....... .+.. ........|+|+||-
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~---------G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERAT---------GKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecC---------CEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 44444589999999999999884212 77888876543221110 1111 135778999999884
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=83.35 E-value=78 Score=34.92 Aligned_cols=197 Identities=9% Similarity=0.034 Sum_probs=100.7
Q ss_pred CCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEc----CCCCE--EEEEe-CC---CcEEEEeCCCCceeeee
Q 001403 847 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS----DALNI--LVSSG-GD---AQIFVWDVDGWGIQTCR 916 (1084)
Q Consensus 847 d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s----pd~~~--l~s~s-~d---g~I~iwd~~~~~~~~~~ 916 (1084)
...+++....++-+.+||+. |+.+..+. .+.++.+..- -+|+. |+.++ .+ .+|++|.+...... ..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~ 142 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LT 142 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ce
Confidence 44577777778889999997 56666654 2334443332 13433 34443 32 46999988742111 11
Q ss_pred eeecCCCC-ccCCCCceEEEE--cc-CCCEEEE--EeCCeEEEEEcC---Ccc----eeeEeecCCCCCEEEEEEccCCC
Q 001403 917 SLQTPDGV-MTLAPSETHIQF--HK-DQTRFLL--VHETHLAIYEAE---ELT----CLKQWFPISSVPISQATFSCDCR 983 (1084)
Q Consensus 917 ~~~~~~~~-~~~~~~v~~~~~--s~-dg~~la~--~~d~~i~vwd~~---~~~----~~~~~~~~h~~~v~~l~fs~dg~ 983 (1084)
.+...... ......+..+|+ ++ +|.+.|. ..+|.+..|.+. .|. .++++.. .+.+..++......
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~--~sQ~EGCVVDDe~g 220 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV--GSQPEGCVVDDETG 220 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETTTT
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC--CCcceEEEEecccC
Confidence 11111000 000113455555 43 5665554 467877777664 332 3444332 45788888888888
Q ss_pred EEEEEeCCCcEEEEEcCCCc-----eeEEeccccccCCCCcccceeeeEEEECCC-CCCEEEEEeCCCcEEEEcCCCC
Q 001403 984 MVFTSFVDGTLSIHEASNLE-----VQCRILSTAYLRPTTSCLHVYPHAIAAHPL-KPTQFAVGLTNGEVYVIEPNEP 1055 (1084)
Q Consensus 984 ~l~t~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~-d~~~l~~~~~dg~v~vw~~~~~ 1055 (1084)
+|+.+-+|.-|.-|+.+... ++.... ...+ ...+.-+++-..++ .|.+||+.-.+++..||+....
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~-g~~l-----~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASAD-GDGL-----VADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-S--EEEEEBS-SSSB------S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred CEEEecCccEEEEEecCCCCCCcceeeeccc-cccc-----ccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999888766666766322 221111 1111 23366677766553 2345555556678999998543
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=82.42 E-value=77 Score=34.18 Aligned_cols=238 Identities=9% Similarity=-0.028 Sum_probs=0.0
Q ss_pred EecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCcccc--ccCcCCCCCCCccEEEecCCCCEEEE
Q 001403 734 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV--NDTTDSNSQEAVPCFALSKNDAYLFS 811 (1084)
Q Consensus 734 ~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~l~~s~dg~~l~~ 811 (1084)
+.-++++++.|+.+|...+. +.. ..+....+...|+++.+.+.-+.|++
T Consensus 9 ~~~~~~~lL~GTe~Gly~~~-----------------------------~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~ 59 (302)
T smart00036 9 ITCDGKWLLVGTEEGLYVLN-----------------------------ISDQPGTLEKLIGRRSVTQIWVLEENNVLLM 59 (302)
T ss_pred cccCCcEEEEEeCCceEEEE-----------------------------cccCCCCeEEecCcCceEEEEEEhhhCEEEE
Q ss_pred EeCCe--EEEEEcCCceeE---------------EEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee
Q 001403 812 ASGGV--ISLYIVMTFKTI---------------LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 874 (1084)
Q Consensus 812 ~sdg~--i~vwd~~~~~~~---------------~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l 874 (1084)
-+++. ++++++...... ...-++.......+........++.+....+|.++...........
T Consensus 60 Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~ 139 (302)
T smart00036 60 ISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKL 139 (302)
T ss_pred EeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhh
Q ss_pred ccc--------ccCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCC--CceeeeeeeecCCCCccCCCCceEEEEccCCCE
Q 001403 875 EGH--------SKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 942 (1084)
Q Consensus 875 ~~h--------~~~V~~l~~spd--~~~l~s~s~dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 942 (1084)
..+ ..++..+..+++ ...+..|+..+...++++.. ........-........ ...++..-+++.+
T Consensus 140 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~---~p~~i~~l~~~e~ 216 (302)
T smart00036 140 FKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSL---KPISVVQVPRDEF 216 (302)
T ss_pred hcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccccccccccccccc---CceEEEEECCCeE
Q ss_pred EEEEeCCeEEEEEcC-CcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEe
Q 001403 943 FLLVHETHLAIYEAE-ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1008 (1084)
Q Consensus 943 la~~~d~~i~vwd~~-~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~ 1008 (1084)
|++-.+..+.+=... .......+.- .....++++... ||+.-..++ |.|+++.+++++..+
T Consensus 217 Llc~~~~~v~Vn~~G~~~~r~~~l~w--~~~p~~~~~~~p--yll~~~~~~-ievr~l~~~~l~q~i 278 (302)
T smart00036 217 LLCYDEFGVFVNLYGKRRSRNPILHW--EFMPESFAYHSP--YLLAFHDNG-IEIRSIKTGELLQEL 278 (302)
T ss_pred EEEECcEEEEEeCCCCccccceEEEc--CCcccEEEEECC--EEEEEcCCc-EEEEECCCCceEEEE
|
Unpublished observations. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=82.36 E-value=7.7 Score=37.77 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=26.4
Q ss_pred cCEEEEEEcCCC------CEEEEEeCCCcEEEEeCCC
Q 001403 879 KRVTGLVFSDAL------NILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 879 ~~V~~l~~spd~------~~l~s~s~dg~I~iwd~~~ 909 (1084)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999954 5788999999999998775
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=82.02 E-value=90 Score=37.14 Aligned_cols=191 Identities=9% Similarity=0.042 Sum_probs=99.9
Q ss_pred CccEEEecCCCCEEEEEeC-C-eEEEEEcCCcee----EEEEcCCCCCeEEEEEcCCCCcEEEE-EeCCC--eEEEEEcC
Q 001403 796 AVPCFALSKNDAYLFSASG-G-VISLYIVMTFKT----ILTIMPPSPTATSLAFNPHDNNVIAI-GMDDS--TILIYNAR 866 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~sd-g-~i~vwd~~~~~~----~~~~~~~~~~i~~l~~s~~d~~~la~-g~~dg--~i~iwd~~ 866 (1084)
.+.+.+.|+++..+|...+ + .+.+..+..+.. ..... .....+.-.|.+ ++.+..+ +..++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~Lt~PS~d~-~g~vWtvd~~~~~~~vl~v~~~- 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRLTSPSWDG-RGDLWVVDRDPADPRLLWLLQG- 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcccCCcCcC-CCCEEEecCCCCCceEEEEEcC-
Confidence 6778999999999887763 3 466655533322 11111 123456666777 4533322 11122 2555543
Q ss_pred Cceeee-eeccccc-CEEEEEEcCCCCEEEEEeC---CCcEEEEeCCC---CceeeeeeeecCCCCccCCCCceEEEEcc
Q 001403 867 SSEVIS-KLEGHSK-RVTGLVFSDALNILVSSGG---DAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFHK 938 (1084)
Q Consensus 867 ~~~~~~-~l~~h~~-~V~~l~~spd~~~l~s~s~---dg~I~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 938 (1084)
+|+... ......+ .|..+..|+||.++|.... .+.|.|=-+.. +............+. ..+.+++|..
T Consensus 441 ~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l----~~v~~~~W~~ 516 (599)
T PRK13613 441 DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPEL----EDVTDMSWAG 516 (599)
T ss_pred CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCC----CccceeEEcC
Confidence 444321 0112223 7999999999988876543 35566555443 221111111111111 2488999999
Q ss_pred CCCEEEEE--eC--CeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCC-EEEEEeCCCcE
Q 001403 939 DQTRFLLV--HE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTL 994 (1084)
Q Consensus 939 dg~~la~~--~d--~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~~dg~i 994 (1084)
++.+++.+ .+ ..+.+.++..... .......-..+..++-..+.+ .|+.+..++.|
T Consensus 517 ~~sL~Vlg~~~~~~~~v~~v~vdG~~~-~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 517 DSQLVVLGREEGGVQQARYVQVDGSTP-PASAPAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred CCEEEEEeccCCCCcceEEEecCCcCc-ccccccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 99988854 23 3344444442222 211112345566777776665 45542455554
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=81.74 E-value=1.6e+02 Score=37.37 Aligned_cols=26 Identities=27% Similarity=0.219 Sum_probs=19.3
Q ss_pred ccceEEEEEEecCCCeEEEeecCCce
Q 001403 725 KANKISRLTYNNGGQAIFALASNGVH 750 (1084)
Q Consensus 725 ~~~~i~~l~~s~~g~~l~~~~~dg~i 750 (1084)
+-+.+.+++++|||...++-..+-.|
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN~rI 685 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGNSRI 685 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCchhh
Confidence 55678899999999977765555444
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=81.74 E-value=89 Score=34.45 Aligned_cols=57 Identities=11% Similarity=0.049 Sum_probs=29.6
Q ss_pred eeEEEecCCCceEeeeee-cc-ccccCceEEEEEcCCCCEEEEEECC--------------CcEEEEECCCCeEE
Q 001403 547 SFLVEWNESEGAIKRTYQ-GL-QLQHNSVSVVHFDTAKDQILAAGDD--------------HVIKIWDMNKVQLL 605 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~-~~-~~~~~~v~~~~~s~~~~~l~~~~~d--------------g~i~iwd~~~~~~~ 605 (1084)
..+.+||+.+.+-...-. +. .........+. .++..++.|+.. ..+..+|..+....
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAV--VGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEE--ECCEEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence 458889988765543211 10 00001122222 345666777742 25778888776654
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.64 E-value=76 Score=32.99 Aligned_cols=196 Identities=12% Similarity=0.033 Sum_probs=111.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC
Q 001403 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 467 (1084)
Q Consensus 388 ~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g 467 (1084)
.+-+..+.|+. ++...+..+.-++|.|+.+.........+.. .+--.++.. .|+ +...+..|.-+.+.|+.+.
T Consensus 86 ~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~v--sGn--~aYVadlddgfLivdvsdp 158 (370)
T COG5276 86 RDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYV--SGN--YAYVADLDDGFLIVDVSDP 158 (370)
T ss_pred hhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEe--cCC--EEEEeeccCcEEEEECCCC
Confidence 34566777874 4565665666699999998776554333322 122334444 466 5666665556777787754
Q ss_pred c---eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee--cCCCCeEEEEEEcCCCCEEEEEeeC
Q 001403 468 S---RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 468 ~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
+ ...+.......-..++. .|++-+.+..|+-+.+-|+........+ ...+..+.++..+++-.+++....
T Consensus 159 ssP~lagrya~~~~d~~~v~I----SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e- 233 (370)
T COG5276 159 SSPQLAGRYALPGGDTHDVAI----SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE- 233 (370)
T ss_pred CCceeeeeeccCCCCceeEEE----ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc-
Confidence 3 33444444444455555 2357777888999999999876543322 222236777888777777766532
Q ss_pred CCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 001403 543 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 601 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 601 (1084)
-+.+-|..+.+....+.... ...++.--.+.-.+++...+..+.-+.+-|..+
T Consensus 234 -----gvlivd~s~~ssp~~~gsye-t~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 234 -----GVLIVDVSGPSSPTVFGSYE-TSNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred -----ceEEEecCCCCCceEeeccc-cCCcccccceecccceeeeeccccCceeEeccC
Confidence 26777766554333332222 012222213333456666666666666666543
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=80.46 E-value=35 Score=36.06 Aligned_cols=101 Identities=13% Similarity=0.163 Sum_probs=62.5
Q ss_pred cEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEe------cCCeEEEEECCCCCceEeec----CCCCeEEEE
Q 001403 458 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS------VDGKIKAWLYDSLGARVDYD----APGLGCTRM 527 (1084)
Q Consensus 458 ~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~----~~~~~i~~~ 527 (1084)
.|++||..+.+-..--.+-.+.|.++.|. .+.++++.|. ....+..||+.+..-...-. .-.+++..+
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~--~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWA--SNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEe--cCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 59999988776655555567889999985 3445666664 34568888887654322111 123567777
Q ss_pred EEc-CCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 528 AYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 528 ~~s-~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
.+. .|+..+..++....+...|..||-.....+
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI 128 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence 664 355445544443566778888886554433
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=80.45 E-value=7.6 Score=26.87 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=28.2
Q ss_pred CCCCEEEEEe--CCeEEEEEcCCceeEEEEcCCCCCeEEEEE
Q 001403 804 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAF 843 (1084)
Q Consensus 804 ~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 843 (1084)
|++++|.++. +++|.++|..+++.+..+.. ......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5788777776 58999999999988887765 233344444
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=80.36 E-value=99 Score=34.14 Aligned_cols=228 Identities=10% Similarity=-0.026 Sum_probs=0.0
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC-----------CcEEEEECCCCcee
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----------KTIKVWDAVTGSRT 470 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d-----------~~i~vwd~~~g~~~ 470 (1084)
|++-|.....+..+|++.....-....--............-+++ +.+.|+.+ ..+..||..+.+-.
T Consensus 21 yv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~--iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~ 98 (346)
T TIGR03547 21 YVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGK--LYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQ 98 (346)
T ss_pred EEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCE--EEEEeCCCCCCCCCcceecccEEEEECCCCEEe
Q ss_pred eEeccCCCcEEEEeecccCCCcEEEEEecC---------------------------------------CeEEEEECCCC
Q 001403 471 YSFEGHGAPVYSLCPHAKENIHFIFSISVD---------------------------------------GKIKAWLYDSL 511 (1084)
Q Consensus 471 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---------------------------------------g~i~iwd~~~~ 511 (1084)
..-..........+....-++++.+.|+.+ ..+.+||..+.
T Consensus 99 ~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~ 178 (346)
T TIGR03547 99 KLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTN 178 (346)
T ss_pred cCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCC
Q ss_pred CceEeecCCC-CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEe------cCCCceEeeeeec-----cccccCceEEEEEc
Q 001403 512 GARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEW------NESEGAIKRTYQG-----LQLQHNSVSVVHFD 579 (1084)
Q Consensus 512 ~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~w------d~~~~~~~~~~~~-----~~~~~~~v~~~~~s 579 (1084)
+=...-..+. ......+...+++..+.++....+.....+| +......+..+.. +. ......+..
T Consensus 179 ~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~---~~~~~~a~~ 255 (346)
T TIGR03547 179 QWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQE---GLAGAFAGI 255 (346)
T ss_pred ceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccc---cccEEeeeE
Q ss_pred CCCCEEEEEECC----------------------CcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCC
Q 001403 580 TAKDQILAAGDD----------------------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 636 (1084)
Q Consensus 580 ~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 636 (1084)
.+++.++.|+.+ ..+.+||..+.+.......... .....+..-+++++++|+.+.
T Consensus 256 ~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~--~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 256 SNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQG--LAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred ECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCC--ceeeEEEEcCCEEEEEeccCC
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1084 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-12 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-04 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 8e-10 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 8e-08 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 8e-10 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 9e-08 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 1e-09 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-09 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-09 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 5e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-09 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-09 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-09 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 8e-08 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-09 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 3e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-09 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-09 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-07 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-09 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 5e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-09 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-09 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 9e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-09 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 5e-07 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-09 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 5e-07 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 5e-09 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-06 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 3e-07 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 3e-07 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-06 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-06 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 7e-06 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 7e-06 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-05 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-05 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-04 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 8e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 9e-05 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 9e-05 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-04 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 6e-04 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 8e-04 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 8e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1084 | |||
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.98 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.98 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.98 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.94 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.9 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.89 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.89 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.88 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.87 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.87 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.86 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.86 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.86 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.85 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.85 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.84 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.84 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.84 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.84 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.83 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.83 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.83 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.83 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.83 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.82 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.82 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.82 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.81 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.8 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.8 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.78 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.77 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.76 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.76 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.72 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.71 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.7 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.7 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.7 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.68 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.67 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.67 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.66 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.65 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.64 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.64 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.63 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.62 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.61 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.59 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.59 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.57 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.57 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.57 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.57 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.56 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.56 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.55 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.55 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.53 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.53 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.52 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.52 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.52 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.51 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.51 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.51 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.5 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.49 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.48 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.48 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.47 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.41 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.41 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.4 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.37 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.35 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.33 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.33 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.31 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.31 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.29 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.28 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.28 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.27 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.25 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.25 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.24 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.22 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.2 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.19 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.19 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.19 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.19 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.17 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.16 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.16 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.16 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.16 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.14 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.13 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.11 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.09 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.08 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.07 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.99 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.97 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.95 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.94 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.92 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.92 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.86 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.86 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.85 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.84 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.8 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.79 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.77 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.72 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.71 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.71 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.71 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.7 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.67 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.65 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.62 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.58 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.56 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.54 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.52 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.51 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.45 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.44 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.43 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.42 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.42 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.41 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.35 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.34 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.33 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.31 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.31 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.29 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.28 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.28 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.26 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.25 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.25 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.24 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.22 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.18 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.17 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.04 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.02 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.99 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.96 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.95 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.91 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.85 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.84 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.83 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.8 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.78 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.74 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.73 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.64 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.62 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.61 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.58 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.57 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.57 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.56 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.47 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.33 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.28 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.22 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.19 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.18 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.08 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.04 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.04 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.04 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.01 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.01 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.92 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.91 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.82 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.81 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.72 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.72 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.59 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.56 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.5 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.49 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.41 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.41 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.37 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.35 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.29 | |
| 2xtc_A | 90 | F-box-like/WD repeat-containing protein TBL1X; tra | 96.11 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.01 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.0 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.87 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.53 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.49 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.44 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.2 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 94.86 | |
| 1uuj_A | 88 | Platelet-activating factor acetylhydrolase IB ALP | 94.71 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 94.32 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 93.75 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 92.99 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 92.64 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 92.57 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 92.45 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 90.99 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 90.26 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 89.42 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 89.39 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 85.84 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 84.76 |
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-68 Score=642.22 Aligned_cols=568 Identities=22% Similarity=0.348 Sum_probs=483.2
Q ss_pred eeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 405 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 405 (1084)
..+.|+||++.|++++|||||++||+++.| ++|+|||.. +... ..+.+|...|++++|||||++||+
T Consensus 8 e~~~L~GH~~~V~~~a~spdg~~las~~~d---------~~v~iWd~~-~~~~---~~l~gh~~~V~~l~fspdg~~las 74 (577)
T 2ymu_A 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDD---------KTVKLWNRN-GQLL---QTLTGHSSSVWGVAFSPDGQTIAS 74 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETT---------SEEEEECTT-SCEE---EEEECCSSCEEEEEECTTSSEEEE
T ss_pred EeeEECCCCCcEEEEEECCCCCEEEEEeCC---------CEEEEEECC-CCEE---EEEeCCCCCEEEEEECCCCCEEEE
Confidence 346799999999999999999999999887 999999964 3322 237899999999999999999999
Q ss_pred EeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEee
Q 001403 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 485 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~ 485 (1084)
++.|++|+|||+. ++.+ ..+.+|...|.+++|+|+++ ++++++.|+.+++|+.. +.......+|...|..+.+
T Consensus 75 ~~~d~~i~vWd~~-~~~~---~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~v~~~~~ 147 (577)
T 2ymu_A 75 ASDDKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAF 147 (577)
T ss_dssp EETTSCEEEEETT-SCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSSCEEEEEE
T ss_pred EeCCCEEEEEECC-CCEE---EEEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCCceeeeee
Confidence 9999999999975 4433 37889999999999999999 89999999999999954 4556677889999999999
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeec
Q 001403 486 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 565 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 565 (1084)
.+ ++..+++++.++.+++|+... ........+...+.+++++|+++++++++. ++.|++||. +++.+..+.+
T Consensus 148 ~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~~~~~~~~ 219 (577)
T 2ymu_A 148 SP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTG 219 (577)
T ss_dssp CT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSCEEEEEEC
T ss_pred ec--CCccceecccccceeccccce-eeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCcEEEEEec
Confidence 55 667899999999999998543 445566677889999999999999999986 677999995 5778888888
Q ss_pred cccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 566 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 566 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
|. ..|.+++|+|+++++++++.|+.|++||. +++.+..+..+. ..|.+++|+|+++.+++++.|+.|++|+...
T Consensus 220 ~~---~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~--~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~ 293 (577)
T 2ymu_A 220 HS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVNGVAFRPDGQTIASASDDKTVKLWNRNG 293 (577)
T ss_dssp CS---SCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred CC---CCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCC--CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC
Confidence 87 89999999999999999999999999996 567777777654 4699999999999999999999999999643
Q ss_pred CCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccc
Q 001403 646 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 725 (1084)
Q Consensus 646 ~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 725 (1084)
+.+..+. +|
T Consensus 294 -~~~~~~~----------------------------------------------------------------------~h 302 (577)
T 2ymu_A 294 -QLLQTLT----------------------------------------------------------------------GH 302 (577)
T ss_dssp -CEEEEEC----------------------------------------------------------------------CC
T ss_pred -cEEEEEe----------------------------------------------------------------------cC
Confidence 2222222 25
Q ss_pred cceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCC
Q 001403 726 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 805 (1084)
Q Consensus 726 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 805 (1084)
...|.+++|+|+++.+++++.||.+++|+..... +.. +. +|...+.+++|+|+
T Consensus 303 ~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-----------------------~~~--~~--~~~~~v~~~~~s~~ 355 (577)
T 2ymu_A 303 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-----------------------LQT--LT--GHSSSVWGVAFSPD 355 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-----------------------EEE--EC--CCSSCEEEEEECTT
T ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----------------------eEE--Ee--CCCCCEEEEEECCC
Confidence 5678888999999999999999999999854321 111 11 37889999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEE
Q 001403 806 DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 884 (1084)
Q Consensus 806 g~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l 884 (1084)
|+++++++ ++.+++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|+++
T Consensus 356 g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~ 432 (577)
T 2ymu_A 356 GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGV 432 (577)
T ss_dssp SSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEE
T ss_pred CCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEE
Confidence 99999998 799999995 5788889999999999999999 8999999999999999995 578889999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceee
Q 001403 885 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLK 963 (1084)
Q Consensus 885 ~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~ 963 (1084)
+|+||+++|++++.|++|++||.... .+....+|.. .|.+++|+||+++||+ +.|+.|++||. +++++.
T Consensus 433 ~~s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~~---~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~ 502 (577)
T 2ymu_A 433 AFSPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ 502 (577)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTSC------EEEEEECCSS---CEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEE
T ss_pred EECCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCCC---CEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEE
Confidence 99999999999999999999997642 2333445544 7999999999999999 57899999995 577777
Q ss_pred EeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeC
Q 001403 964 QWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1043 (1084)
Q Consensus 964 ~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~ 1043 (1084)
. +.+|...|++++|+|||++|++++.||.|++||. +++.+..+.. |.+.|. +++|+| |+.+|++++.
T Consensus 503 ~-~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~--------h~~~v~--~~~fs~-dg~~l~s~~~ 569 (577)
T 2ymu_A 503 T-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG--------HSSSVW--GVAFSP-DGQTIASASS 569 (577)
T ss_dssp E-EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEEC--------CSSCEE--EEEECT-TSSCEEEEET
T ss_pred E-EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcC--------CCCCEE--EEEEcC-CCCEEEEEeC
Confidence 6 5589999999999999999999999999999996 5677666551 345565 678999 6899999999
Q ss_pred CCcEEEEc
Q 001403 1044 NGEVYVIE 1051 (1084)
Q Consensus 1044 dg~v~vw~ 1051 (1084)
||+|++||
T Consensus 570 D~~i~~Wd 577 (577)
T 2ymu_A 570 DKTVKLWN 577 (577)
T ss_dssp TSCEEEEC
T ss_pred CCEEEEeC
Confidence 99999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-66 Score=627.41 Aligned_cols=576 Identities=14% Similarity=0.190 Sum_probs=476.0
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCE
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 411 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~ 411 (1084)
.+.+.+.+++|||||++||++. + ++|+||++.++.... .+.+|...|++++|||||++||+|+.|++
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~---------~~v~l~~~~~~~~~~---~~~~h~~~v~~~~~spdg~~lasg~~d~~ 82 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-G---------TSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGYYCASGDVHGN 82 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-T---------TEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred cccCceeEEeeCCCCCEEEeCC-C---------CEEEEecCCCcccCe---EecCCCCceEEEEECCCCcEEEEEeCCCC
Confidence 4567889999999999999974 3 789999998655432 37899999999999999999999999999
Q ss_pred EEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC----CcEEEEECCCCceeeEeccCCCcEEEEeecc
Q 001403 412 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 487 (1084)
Q Consensus 412 v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d----~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~ 487 (1084)
|+|||+.+++... ...+.+|.+.|.+++|+||++ .|++++.+ +.|++|| ++..+..+.+|...|.+++|+|
T Consensus 83 v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p 157 (611)
T 1nr0_A 83 VRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKP 157 (611)
T ss_dssp EEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECS
T ss_pred EEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECC
Confidence 9999998665332 236779999999999999999 67777754 3667776 6777888999999999999966
Q ss_pred cCCCc-EEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeee--
Q 001403 488 KENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-- 564 (1084)
Q Consensus 488 ~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-- 564 (1084)
++. .|++++.|++|++||....+....+..|...|.+++|+|||++|++++. ++.|++||..+++.+..+.
T Consensus 158 --~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~~~~~~~ 231 (611)
T 1nr0_A 158 --SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTGVFEDD 231 (611)
T ss_dssp --SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEEECBCT
T ss_pred --CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEeeeeccc
Confidence 444 6999999999999999888778888999999999999999999999986 6679999999999888874
Q ss_pred -----ccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCC-CCcceEEEecCCCEEEEEECCCeE
Q 001403 565 -----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLAVIANENRI 638 (1084)
Q Consensus 565 -----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i 638 (1084)
+|. +.|.+++|+|++++|++++.|++|++||+.+++.+..+..+... ..+..+.| ++..+++++.|+.+
T Consensus 232 ~~~~~~h~---~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i 306 (611)
T 1nr0_A 232 SLKNVAHS---GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFI 306 (611)
T ss_dssp TSSSCSSS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCE
T ss_pred cccccccC---CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcE
Confidence 565 89999999999999999999999999999999999888654221 12334445 78899999999999
Q ss_pred EEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceee
Q 001403 639 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 718 (1084)
Q Consensus 639 ~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 718 (1084)
++|+...++....+.+|...|.+++++ |+++++++++.|+++++||+..+...
T Consensus 307 ~~~~~~~~~~~~~~~gh~~~v~~l~~s----------------------pdg~~l~s~s~D~~v~~Wd~~~~~~~----- 359 (611)
T 1nr0_A 307 NFVNPELGSIDQVRYGHNKAITALSSS----------------------ADGKTLFSADAEGHINSWDISTGISN----- 359 (611)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTTCCEE-----
T ss_pred EEEeCCCCCcceEEcCCCCCEEEEEEe----------------------CCCCEEEEEeCCCcEEEEECCCCcee-----
Confidence 999999988888889999999999997 67889999999999999998743221
Q ss_pred ccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCcc
Q 001403 719 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 798 (1084)
Q Consensus 719 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 798 (1084)
......|...|.+++|++++ .+++++.|+.+++|+.......... ..... ......
T Consensus 360 ~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~------------------~~~~~-----~~~~~~ 415 (611)
T 1nr0_A 360 RVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSK------------------AVANK-----LSSQPL 415 (611)
T ss_dssp ECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTS------------------CCEEE-----CSSCEE
T ss_pred eecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccc------------------eeeee-----cCCCCc
Confidence 11224588899999999776 5889999999999987643211000 00000 233467
Q ss_pred EEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee--eeeecc
Q 001403 799 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEG 876 (1084)
Q Consensus 799 ~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~--~~~l~~ 876 (1084)
+++++|+|+.++++.++.+++|+ .++ +..+. +...+.+++|+| |+++||+|+.|++|++||+.+++. +.. .+
T Consensus 416 ~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~ 489 (611)
T 1nr0_A 416 GLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IV 489 (611)
T ss_dssp EEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EE
T ss_pred EEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cC
Confidence 89999999999888899999999 344 45554 778899999999 899999999999999999987653 334 67
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEE
Q 001403 877 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIY 954 (1084)
Q Consensus 877 h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vw 954 (1084)
|...|++++|+|||++|++++.|++|++||+.+ ++... .....+|.. .|.+++|+|||++||+ +.|++|++|
T Consensus 490 h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~---~~~~~~H~~---~V~~v~fspdg~~lasgs~D~~v~lW 563 (611)
T 1nr0_A 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---TNSWTFHTA---KVACVSWSPDNVRLATGSLDNSVIVW 563 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---CCCCCCCSS---CEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee---eeeeeeccc---ceeEEEECCCCCEEEEEECCCcEEEE
Confidence 999999999999999999999999999999987 33211 001223544 8999999999999999 589999999
Q ss_pred EcCCcceee-EeecCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001403 955 EAEELTCLK-QWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 955 d~~~~~~~~-~~~~~h-~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~ 1000 (1084)
|+.++.... ....+| ...|.+++|+||++ |++++.|++|++|++.
T Consensus 564 ~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 564 NMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred ECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 999876433 456789 89999999999998 9999999999999974
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-63 Score=600.13 Aligned_cols=557 Identities=22% Similarity=0.347 Sum_probs=473.4
Q ss_pred cCCCCCCCCcchhhhcccccCCCccCCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCC
Q 001403 295 KNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGA 374 (1084)
Q Consensus 295 ~s~~~fsP~~s~~~~~f~~~~~~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~ 374 (1084)
..++.|||+++.+...-. .....+++...+++++|.+|.+.|++++|||||++||+++.| ++|+|||...
T Consensus 19 V~~~a~spdg~~las~~~-d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d---------~~i~vWd~~~ 88 (577)
T 2ymu_A 19 VRGVAFSPDGQTIASASD-DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD---------KTVKLWNRNG 88 (577)
T ss_dssp EEEEEECTTSSCEEEEET-TSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTS
T ss_pred EEEEEECCCCCEEEEEeC-CCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCC---------CEEEEEECCC
Confidence 457899999988765422 223344556678899999999999999999999999999887 9999999753
Q ss_pred ccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEe
Q 001403 375 CSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 454 (1084)
Q Consensus 375 ~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~ 454 (1084)
... ..+.+|...|.+++|+|||++|++++.|+.+++|+..... .....+|...|.++.|+|++. .+++++
T Consensus 89 -~~~---~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~--~~~~~~ 158 (577)
T 2ymu_A 89 -QLL---QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFSPDGQ--TIASAS 158 (577)
T ss_dssp -CEE---EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEECTTSS--CEEEEE
T ss_pred -CEE---EEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce----eeeccCCCCceeeeeeecCCc--cceecc
Confidence 222 2378899999999999999999999999999999987643 225678999999999999999 788999
Q ss_pred CCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCC
Q 001403 455 DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR 534 (1084)
Q Consensus 455 ~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~ 534 (1084)
.++.+++|+. .+........|...|.++.+.+ ++.++++++.||.|++||. +.+....+..+...+.+++|+|+++
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~ 234 (577)
T 2ymu_A 159 DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ 234 (577)
T ss_dssp TTSEEEEECT-TSCEEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSS
T ss_pred cccceecccc-ceeeeeeccCCCcceeeeeecC--CCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCC
Confidence 9999999994 5556677788999999999954 6789999999999999995 4566677888899999999999999
Q ss_pred EEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCC
Q 001403 535 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 614 (1084)
Q Consensus 535 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 614 (1084)
+|++++. ++.|++||. +++.+..+.+|. ..|.+++|+|+++.+++++.|+.|++||. +++.+..+..+.
T Consensus 235 ~l~~~~~----d~~i~~w~~-~~~~~~~~~~~~---~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~-- 303 (577)
T 2ymu_A 235 TIASASD----DKTVKLWNR-NGQLLQTLTGHS---SSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS-- 303 (577)
T ss_dssp CEEEEET----TSCEEEECT-TSCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCS--
T ss_pred EEEEEeC----CCEEEEEeC-CCCEEEEEecCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCC--
Confidence 9999876 667999996 567778888887 89999999999999999999999999996 467777777654
Q ss_pred CCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccc
Q 001403 615 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 694 (1084)
Q Consensus 615 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 694 (1084)
..|.+++|+|+++++++++.|+.|++|+.... .+..+.
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~~----------------------------------------- 341 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTLT----------------------------------------- 341 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEEC-----------------------------------------
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeEEEe-----------------------------------------
Confidence 46999999999999999999999999997643 221111
Q ss_pred eecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCee
Q 001403 695 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 774 (1084)
Q Consensus 695 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 774 (1084)
.|...+.+++|+|+|+.+++++.+|.+++|+....
T Consensus 342 -----------------------------~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~---------------- 376 (577)
T 2ymu_A 342 -----------------------------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ---------------- 376 (577)
T ss_dssp -----------------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC----------------
T ss_pred -----------------------------CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC----------------
Confidence 15567888999999999999999999999984321
Q ss_pred ecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEE
Q 001403 775 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 853 (1084)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~ 853 (1084)
.+.. +. +|...|.+++|+|||++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++
T Consensus 377 -------~~~~--~~--~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~ 443 (577)
T 2ymu_A 377 -------LLQT--LT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIAS 443 (577)
T ss_dssp -------EEEE--EE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEE
T ss_pred -------EEEE--ec--CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEE
Confidence 1111 11 3788999999999999999998 799999995 5788889999999999999999 8999999
Q ss_pred EeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceE
Q 001403 854 GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 933 (1084)
Q Consensus 854 g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 933 (1084)
++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||... + ++....+|.. .|++
T Consensus 444 ~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-----~~~~~~~h~~---~v~~ 513 (577)
T 2ymu_A 444 ASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHSS---SVRG 513 (577)
T ss_dssp EETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C-----EEEEEECCSS---CEEE
T ss_pred EcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C-----EEEEEeCCCC---CEEE
Confidence 999999999996 5778889999999999999999999999999999999999653 2 3444556654 8999
Q ss_pred EEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 001403 934 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 998 (1084)
Q Consensus 934 ~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd 998 (1084)
++|+|||++||+ +.|+.|++||. +++++.. +.+|...|++++|+|||++|+|++.|++|++||
T Consensus 514 l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~-~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 514 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQT-LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECT-TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999 57899999996 5777776 558999999999999999999999999999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-63 Score=603.39 Aligned_cols=570 Identities=11% Similarity=0.109 Sum_probs=455.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
+.+.+.+++|||||++||+++ ++.|++|++.+++... .+.+|...|++++|+|||+ +|++|+.|++|+|||+.+
T Consensus 17 ~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~---~~~~h~~~v~~~~~spdg~--~lasg~~d~~v~lWd~~~ 90 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDTTQ 90 (611)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEESSS
T ss_pred ccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCe---EecCCCCceEEEEECCCCc--EEEEEeCCCCEEEeECCC
Confidence 567888999999999999998 4689999998876554 7889999999999999999 899999999999999976
Q ss_pred Cc--eeeEeccCCCcEEEEeecccCCCcEEEEEecC----CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCC-EEEEE
Q 001403 467 GS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSC 539 (1084)
Q Consensus 467 g~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~-~l~~~ 539 (1084)
++ ....+.+|.++|.+++|+| +++.|++++.+ +.|++|| .+.....+..|...|.+++|+|++. .|+++
T Consensus 91 ~~~~~~~~~~~~~~~v~~v~fs~--dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~ 166 (611)
T 1nr0_A 91 TTHILKTTIPVFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISG 166 (611)
T ss_dssp TTCCEEEEEECSSSCEEEEEECT--TSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred CcceeeEeecccCCceEEEEECC--CCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEE
Confidence 54 4567889999999999955 67899988865 3677775 5566667888999999999999997 58888
Q ss_pred eeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC-----CCC
Q 001403 540 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGL 614 (1084)
Q Consensus 540 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~ 614 (1084)
+. ++.|++||..+++....+.+|. ..|.+++|+|++++|++++.|++|++||..+++.+..+... ++.
T Consensus 167 s~----D~~v~lwd~~~~~~~~~l~~H~---~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~ 239 (611)
T 1nr0_A 167 SD----DNTVAIFEGPPFKFKSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 239 (611)
T ss_dssp ET----TSCEEEEETTTBEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS
T ss_pred eC----CCeEEEEECCCCeEeeeecccc---CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccC
Confidence 76 6679999999999999999988 89999999999999999999999999999999998887421 334
Q ss_pred CCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccc---cceeEEEEcCCCceeeeeccCceeEecCCCCCCCC
Q 001403 615 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS---DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 691 (1084)
Q Consensus 615 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~ 691 (1084)
..|.+++|+|++++|++++.|++|++||+.+++.+..+..+. .....+. .++.
T Consensus 240 ~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~ 295 (611)
T 1nr0_A 240 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII------------------------WTKQ 295 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE------------------------ECSS
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE------------------------EcCC
Confidence 579999999999999999999999999999987776654321 1111111 2467
Q ss_pred ccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecC
Q 001403 692 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP 771 (1084)
Q Consensus 692 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 771 (1084)
.+++++.|+.+++|+...... . ....+|...|.+++|+|+|++|++++.|+.|++|++..+..
T Consensus 296 ~l~s~s~d~~i~~~~~~~~~~---~---~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~----------- 358 (611)
T 1nr0_A 296 ALVSISANGFINFVNPELGSI---D---QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS----------- 358 (611)
T ss_dssp CEEEEETTCCEEEEETTTTEE---E---EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------
T ss_pred EEEEEeCCCcEEEEeCCCCCc---c---eEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce-----------
Confidence 899999999999999763321 1 11235889999999999999999999999999998754321
Q ss_pred CeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEE---EcCCCCCeEEEEEcCCCC
Q 001403 772 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT---IMPPSPTATSLAFNPHDN 848 (1084)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~---~~~~~~~i~~l~~s~~d~ 848 (1084)
.... ..+|...|.+++|++++.++..+.|+.+++|++.++..... .........+++|+| ++
T Consensus 359 -----------~~~~---~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg 423 (611)
T 1nr0_A 359 -----------NRVF---PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DG 423 (611)
T ss_dssp -----------EECS---SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TS
T ss_pred -----------eeec---ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CC
Confidence 1111 11488899999999887655555589999999876543210 001234567899999 78
Q ss_pred cEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCC
Q 001403 849 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 928 (1084)
Q Consensus 849 ~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 928 (1084)
++++++ .++.+++|+ .++ +..+. |...+.+++|+|||++||+|+.|++|++||+.++.... +.. .+|..
T Consensus 424 ~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~~-- 492 (611)
T 1nr0_A 424 DIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHPA-- 492 (611)
T ss_dssp SCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECSS--
T ss_pred cEEEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCCC--
Confidence 777766 467899998 344 55554 88899999999999999999999999999998754322 122 33443
Q ss_pred CCceEEEEccCCCEEEE-EeCCeEEEEEcCC-cceeeE-eecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 001403 929 PSETHIQFHKDQTRFLL-VHETHLAIYEAEE-LTCLKQ-WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1005 (1084)
Q Consensus 929 ~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~-~~~~~~-~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~ 1005 (1084)
.|.+++|||||++||+ +.|++|++|++.+ ++.... ...+|...|.+++|||||++|++++.|++|++||+.++...
T Consensus 493 -~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~ 571 (611)
T 1nr0_A 493 -EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH 571 (611)
T ss_dssp -CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred -ceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccc
Confidence 7999999999999999 5789999999987 665544 34459999999999999999999999999999999987532
Q ss_pred E-EeccccccCCCCc-ccceeeeEEEECCCCCCEEEEEeCCCcEEEEcC
Q 001403 1006 C-RILSTAYLRPTTS-CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1052 (1084)
Q Consensus 1006 ~-~~~~~~~~~~~~~-~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~ 1052 (1084)
. ... .+ | ...|. +++|+| |+. |++|+.||+|++|++
T Consensus 572 ~~~~~------~~-h~~~~v~--~v~fs~-d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 572 PIIIK------GA-HAMSSVN--SVIWLN-ETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp CEEET------TS-STTSCEE--EEEEEE-TTE-EEEEETTSCEEEEEC
T ss_pred cchhh------cc-CcccCee--EEEEcC-CCE-EEEecCCCCEEEEec
Confidence 1 111 11 2 34455 678888 466 999999999999998
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-64 Score=667.68 Aligned_cols=661 Identities=14% Similarity=0.163 Sum_probs=530.0
Q ss_pred cccccccCccccCCCCCCCCcchhhhcccc-------cCCCccCC-----CccceeeecccCCCCceEEEEcCCCceeee
Q 001403 284 ASTVTYPGVSLKNIPDYSPKSSLKKEMFQS-------FGETSFSD-----FPKTVAQTLIEGSSSPMSMDFHPVQHTLLL 351 (1084)
Q Consensus 284 ~~~~~~p~~~~~s~~~fsP~~s~~~~~f~~-------~~~~~~~~-----~p~~~~~~l~~h~~~V~~v~~spdg~~las 351 (1084)
......|.+.+.....+.|..+.+...+.. .+...... ........+.+|.+.|++++|||||++||+
T Consensus 553 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 632 (1249)
T 3sfz_A 553 HLLGRQPFPNIVQLGLCEPETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIAS 632 (1249)
T ss_dssp TTTTSSSCCCHHHHHHTSCTTSHHHHHHHHHHHTTCSSSCCCCCCGGGTTCSCCCSEEECCCSSCEEEEEECTTSSEEEE
T ss_pred eeeeccccccceeeecCCCCcchHHHHHhhhcccCCCCCeEEEEEccCccccccceEEEecccccEEEEEECCCCCEEEE
Confidence 334566777666666667777655433321 11111111 112345577899999999999999999999
Q ss_pred ecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeec
Q 001403 352 GLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA 431 (1084)
Q Consensus 352 ~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~ 431 (1084)
++.| ++|+|||+.++..... +.+|...|.+++|+|||++||+++.|++|+|||+.+++.+. .+.+
T Consensus 633 ~~~d---------~~i~vw~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~ 697 (1249)
T 3sfz_A 633 CGAD---------KTLQVFKAETGEKLLD---IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVH---TYDE 697 (1249)
T ss_dssp EETT---------SCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEEC
T ss_pred EeCC---------CeEEEEECCCCCEEEE---eccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEE---EEcC
Confidence 9888 9999999998765543 67899999999999999999999999999999999997665 7789
Q ss_pred ccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC
Q 001403 432 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 511 (1084)
Q Consensus 432 h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 511 (1084)
|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|.+.|.+++|++ ++.++++++.||.|++||+.+.
T Consensus 698 ~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~ 775 (1249)
T 3sfz_A 698 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP--DDELLASCSADGTLRLWDVRSA 775 (1249)
T ss_dssp CSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECS--STTEEEEEESSSEEEEEEGGGT
T ss_pred CCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEec--CCCEEEEEECCCeEEEEeCCCC
Confidence 99999999999976555899999999999999999999999999999999999965 6789999999999999999887
Q ss_pred CceEeecC-------------CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeee-ccccccCceEEEE
Q 001403 512 GARVDYDA-------------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVH 577 (1084)
Q Consensus 512 ~~~~~~~~-------------~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~~~v~~~~ 577 (1084)
.....+.. ....+.+++|+|+|+.+++++ ++.+.+||..++.....+. +|. ..+.+++
T Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~~v~~~d~~~~~~~~~~~~~~~---~~v~~~~ 847 (1249)
T 3sfz_A 776 NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KNKVLLFDIHTSGLLAEIHTGHH---STIQYCD 847 (1249)
T ss_dssp EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TTEEEEEETTTCCEEEEEECSSS---SCCCEEE
T ss_pred cccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CCcEEEEEecCCCceeEEcCCCC---CceEEEE
Confidence 66554432 123678899999999999986 4569999999998887776 455 8899999
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeecccccc
Q 001403 578 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD 657 (1084)
Q Consensus 578 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 657 (1084)
|+|+++.+++++.||.|++||+.++..+..+..+.. .|.+++|+|+++++++++.||.|++|++.+......... .
T Consensus 848 ~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~--~ 923 (1249)
T 3sfz_A 848 FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS--WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVL--K 923 (1249)
T ss_dssp ECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSE--E
T ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc--ceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecc--c
Confidence 999999999999999999999999999999886654 699999999999999999999999999874322211110 0
Q ss_pred ceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecC
Q 001403 658 NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNG 737 (1084)
Q Consensus 658 ~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 737 (1084)
......+. +++..++.....+.+.++...... ... .+...+.+++++|+
T Consensus 924 ~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~i~~~~~sp~ 972 (1249)
T 3sfz_A 924 QEIDVVFQ----------------------ENETMVLAVDNIRGLQLIAGKTGQ---IDY------LPEAQVSCCCLSPH 972 (1249)
T ss_dssp EEEEEEEE----------------------TTEEEEEEEESSSSEEEEEESSCC---EEE------ECCSCEEEEEECTT
T ss_pred ceeeEEEc----------------------CCCcEEEEecCCcceEEEecCcce---EEE------cccCcEEEEEEcCC
Confidence 01111121 223333333444444444432111 111 13467999999999
Q ss_pred CCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCe
Q 001403 738 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV 816 (1084)
Q Consensus 738 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~ 816 (1084)
++.+++++.+|.+.+|++..+.. ... + .+|...|.+++|+|+|+++++++ ||.
T Consensus 973 g~~l~~g~~~g~i~i~d~~~~~~----------------------~~~--~--~~h~~~v~~l~~s~dg~~l~s~~~dg~ 1026 (1249)
T 3sfz_A 973 LEYVAFGDEDGAIKIIELPNNRV----------------------FSS--G--VGHKKAVRHIQFTADGKTLISSSEDSV 1026 (1249)
T ss_dssp SSEEEEEETTSCCEEEETTTTSC----------------------EEE--C--CCCSSCCCCEEECSSSSCEEEECSSSB
T ss_pred CCEEEEEcCCCCEEEEEcCCCce----------------------eee--c--ccCCCceEEEEECCCCCEEEEEcCCCE
Confidence 99999999999999998754321 111 1 14889999999999999999998 799
Q ss_pred EEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEE
Q 001403 817 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS 896 (1084)
Q Consensus 817 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~ 896 (1084)
|++||+.+++... +..|...+.+++|+| ++ .+++++.||.|++||+.+++.+..+.+|.+.|++++|+||+++|+++
T Consensus 1027 i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 1103 (1249)
T 3sfz_A 1027 IQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSST 1103 (1249)
T ss_dssp EEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEE
T ss_pred EEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEE
Confidence 9999999988764 557889999999999 65 56789999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEe--------ec
Q 001403 897 GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQW--------FP 967 (1084)
Q Consensus 897 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~--------~~ 967 (1084)
+.||+|++||+.+++ .+....+|.. .|++++|+|||++||++ .||.|++||+.+++.+..+ ..
T Consensus 1104 s~d~~v~iwd~~~~~-----~~~~l~~h~~---~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1175 (1249)
T 3sfz_A 1104 SADKTAKIWSFDLLS-----PLHELKGHNG---CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTA 1175 (1249)
T ss_dssp CCSSCCCEECSSSSS-----CSBCCCCCSS---CEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC------
T ss_pred cCCCcEEEEECCCcc-----eeeeeccCCC---cEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccccccc
Confidence 999999999999865 4455566655 89999999999999995 7899999999999887654 24
Q ss_pred CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcE
Q 001403 968 ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV 1047 (1084)
Q Consensus 968 ~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v 1047 (1084)
+|...|++++|||||++|++++ |.|++||+.+++.+..+.. |...+. +++|+| |+.+|++++.||.|
T Consensus 1176 ~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~--------~~~~i~--~~~~s~-dg~~l~~~~~dg~v 1242 (1249)
T 3sfz_A 1176 THGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYT--------NGTNLK--KIHVSP-DFRTYVTVDNLGIL 1242 (1249)
T ss_dssp -CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCC--------SSCCCC--CCEECS-SSCCEEEECTTCCE
T ss_pred ccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeec--------cCCccc--EEEECC-CCCEEEEecCCcEE
Confidence 6899999999999999999885 8999999999988755441 233344 578999 58999999999999
Q ss_pred EEEcCCC
Q 001403 1048 YVIEPNE 1054 (1084)
Q Consensus 1048 ~vw~~~~ 1054 (1084)
++|++.+
T Consensus 1243 ~vw~l~e 1249 (1249)
T 3sfz_A 1243 YILQVLE 1249 (1249)
T ss_dssp EEECCCC
T ss_pred EEEeecC
Confidence 9999864
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-60 Score=580.48 Aligned_cols=562 Identities=11% Similarity=0.153 Sum_probs=484.3
Q ss_pred ccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccc-ceeeeecCCCCC-eEEEEEcC--CCCEEEEE
Q 001403 331 IEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSML-FKTALVRDPGVS-VNRVVWSP--DGSLLGVA 406 (1084)
Q Consensus 331 ~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~-~~~~~~~~h~~~-V~~v~fsp--dg~~las~ 406 (1084)
..|.+.|.+++|||||++||++. | +.|+|||+.++... .....+.+|... |.+++|+| ||++||++
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~---------~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~ 84 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-G---------KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG 84 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-T---------TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEE
T ss_pred CCccCceeEEEECCCCCEEEEec-C---------CeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEe
Confidence 36788999999999999999975 4 89999999976111 122347889999 99999999 99999999
Q ss_pred eCCCEEEEEEccCCc-----cccceeeeecccccEeEEEeecCCCcEEEEEEeCC----CcEEEEECCCCceeeEeccCC
Q 001403 407 YSKHIVQLYAYHGGS-----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFEGHG 477 (1084)
Q Consensus 407 ~~dg~v~iwd~~~~~-----~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d----~~i~vwd~~~g~~~~~~~~h~ 477 (1084)
+.||.|++||+.++. .......+..|...|.+++|+|+++ ++++++.+ +.|.+|| +++.+..+.+|.
T Consensus 85 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~ 160 (615)
T 1pgu_A 85 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SGNSLGEVSGHS 160 (615)
T ss_dssp ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TCCEEEECCSCS
T ss_pred cCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CCCcceeeecCC
Confidence 999999999997651 1123336778999999999999999 78888877 6788887 778889999999
Q ss_pred CcEEEEeecccCCCc-EEEEEecCCeEEEEECCCCCceEeecCCCC---eEEEEEEcCC-CCEEEEEeeCCCCCeeEEEe
Q 001403 478 APVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSAN-GRRLFSCGTSKEGESFLVEW 552 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~i~~~~~s~d-~~~l~~~~~~~~~~~~i~~w 552 (1084)
..|.+++|++ ++. .+++++.||.|++||+.+.+....+..+.. .|.+++|+|+ ++++++++. ++.|++|
T Consensus 161 ~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~vw 234 (615)
T 1pgu_A 161 QRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCF 234 (615)
T ss_dssp SCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEE
T ss_pred ccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC----CCeEEEE
Confidence 9999999965 445 899999999999999999888888888888 9999999999 999999986 6679999
Q ss_pred cCCCceEeeee-e---ccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCC--CCCcceEEEecCC
Q 001403 553 NESEGAIKRTY-Q---GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPRICFNKNG 626 (1084)
Q Consensus 553 d~~~~~~~~~~-~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~ 626 (1084)
|+.+++.+..+ . .|. ..|.+++|+ +++++++++.||.|++||+.+++.+..+..+.. ...+.++.|+ ++
T Consensus 235 d~~~~~~~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 309 (615)
T 1pgu_A 235 DGKSGEFLKYIEDDQEPVQ---GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GN 309 (615)
T ss_dssp ETTTCCEEEECCBTTBCCC---SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ET
T ss_pred ECCCCCEeEEecccccccC---CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CC
Confidence 99999999888 5 666 899999999 999999999999999999999999998876521 1245677775 89
Q ss_pred CEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcccccc
Q 001403 627 TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 706 (1084)
Q Consensus 627 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~ 706 (1084)
.++++++.++.|++||+.+++.+..+.+|...|.++++ |. +++++.|+.+++|+
T Consensus 310 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~-------------------------l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 310 GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP-------------------------LISGSYDGRIMEWS 363 (615)
T ss_dssp TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT-------------------------TEEEETTSCEEETT
T ss_pred CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC-------------------------cEEECCCCeEEEEE
Confidence 99999999999999999999999999999999998887 52 78889999999999
Q ss_pred ceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccc
Q 001403 707 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVN 786 (1084)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1084)
+. .+. ..|...|.+++| +++..+++++.|+.+++|++.....
T Consensus 364 ~~--------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~-------------------------- 405 (615)
T 1pgu_A 364 SS--------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEF-------------------------- 405 (615)
T ss_dssp TT--------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEEC--------------------------
T ss_pred ch--------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcc--------------------------
Confidence 86 111 458899999999 6788899999999999998654321
Q ss_pred cCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeC-CCeEEEEEc
Q 001403 787 DTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-DSTILIYNA 865 (1084)
Q Consensus 787 ~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~-dg~i~iwd~ 865 (1084)
...+.+++++|++.+++++.++.+.+|++.+++.+..+. +...+.+++|+ +++|++++. ||.|++||+
T Consensus 406 -------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~ 474 (615)
T 1pgu_A 406 -------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKL 474 (615)
T ss_dssp -------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEETTTSCEEEEET
T ss_pred -------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEeecCCCeEEEEEC
Confidence 125778999999999999888999999999999988887 78899999998 679999999 999999999
Q ss_pred CCceee-eeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCC-CccCCCCceEEEEcc-----
Q 001403 866 RSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSETHIQFHK----- 938 (1084)
Q Consensus 866 ~~~~~~-~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~----- 938 (1084)
.+++.. ..+.+|...|++++|+||+++|++++.||.|++||+.+++. +....+ |.. .|++++|+|
T Consensus 475 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~h~~---~v~~~~~sp~~~~~ 546 (615)
T 1pgu_A 475 SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV-----KTSRWAFRTS---KINAISWKPAEKGA 546 (615)
T ss_dssp TEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EECCSCCCSS---CEEEEEECCCC---
T ss_pred CCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc-----eeEeecCCCC---ceeEEEEcCccccc
Confidence 988766 77888999999999999999999999999999999998653 344444 544 899999999
Q ss_pred -----CCCEEEEE-eCCeEEEEEcCCc-ceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001403 939 -----DQTRFLLV-HETHLAIYEAEEL-TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 939 -----dg~~la~~-~d~~i~vwd~~~~-~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
++++||++ .|+.|++||+.++ +++.. ..+|...|.+++|+|||+ |++++.||.|++|++.++
T Consensus 547 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 547 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA-LNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp ---CCSCCEEEEEETTSCEEEEESSCTTCCEEE-TTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred cccccCCCEEEEEcCCCcEEEEECCCCceechh-hhcCccceEEEEEcCCCC-eEEecCCceEEEEeeecC
Confidence 99999995 7899999999998 45544 678999999999999999 999999999999999753
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-58 Score=607.94 Aligned_cols=589 Identities=16% Similarity=0.185 Sum_probs=497.5
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEE
Q 001403 382 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 461 (1084)
Q Consensus 382 ~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~v 461 (1084)
..+.+|.+.|++++|||||++||+|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++++.|++|++
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKI 683 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEE
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEE
Confidence 3477899999999999999999999999999999999987655 6789999999999999999 8999999999999
Q ss_pred EECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEee
Q 001403 462 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 462 wd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 541 (1084)
||+.+++.+..+.+|...|.+++|++..++.++++++.||.|++||+.++.....+..|...|.+++|+|+++++++++.
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred EECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence 99999999999999999999999988777789999999999999999999999999999999999999999999999986
Q ss_pred CCCCCeeEEEecCCCceEeeeeeccc----------cccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC
Q 001403 542 SKEGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 611 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 611 (1084)
++.|++||+.+++....+.... .....+.+++|+|+++.+++++ ++.+.+||..++.....+...
T Consensus 764 ----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~ 838 (1249)
T 3sfz_A 764 ----DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG 838 (1249)
T ss_dssp ----SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECS
T ss_pred ----CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCC
Confidence 6779999999988776664321 0123678899999999999987 689999999999988877632
Q ss_pred CCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCC
Q 001403 612 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 691 (1084)
Q Consensus 612 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~ 691 (1084)
+...+.+++|+|+++++++++.+|.|++|++.++..+..+.+|...|.+++|+ |+++
T Consensus 839 -~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s----------------------pdg~ 895 (1249)
T 3sfz_A 839 -HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS----------------------PDGS 895 (1249)
T ss_dssp -SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSS
T ss_pred -CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC----------------------CCCC
Confidence 23468999999999999999999999999999999999999999999999997 6788
Q ss_pred ccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecC
Q 001403 692 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP 771 (1084)
Q Consensus 692 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 771 (1084)
.+++++.|+.+++|+.......... .......+.+.+++..+++....+.+.++.....
T Consensus 896 ~l~s~s~dg~v~vw~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 954 (1249)
T 3sfz_A 896 SFLTASDDQTIRVWETKKVCKNSAI--------VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG------------- 954 (1249)
T ss_dssp EEEEEETTSCEEEEEHHHHHSCCSS--------SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC-------------
T ss_pred EEEEEeCCCeEEEEEccccceeeee--------cccceeeEEEcCCCcEEEEecCCcceEEEecCcc-------------
Confidence 8999999999999997643222111 1223445667777777777777777766653321
Q ss_pred CeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcE
Q 001403 772 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 850 (1084)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~ 850 (1084)
.... .+...+.+++++|+++++++++ +|.|++||+.+++....+.+|...|++++|+| ++++
T Consensus 955 ---------~~~~-------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~ 1017 (1249)
T 3sfz_A 955 ---------QIDY-------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKT 1017 (1249)
T ss_dssp ---------CEEE-------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSC
T ss_pred ---------eEEE-------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCE
Confidence 1111 1456799999999999999998 79999999999999999999999999999999 8999
Q ss_pred EEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCC
Q 001403 851 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 930 (1084)
Q Consensus 851 la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1084)
|++++.||.|++||+.+++... +.+|...|.+++|+|++ .+++++.||+|++||+.+++.. ....+|.. .
T Consensus 1018 l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~-----~~~~~~~~---~ 1087 (1249)
T 3sfz_A 1018 LISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIE-----RDFTCHQG---T 1087 (1249)
T ss_dssp EEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCC-----EEEECCSS---C
T ss_pred EEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCcee-----EEEcccCC---c
Confidence 9999999999999999988764 56799999999999975 6788999999999999987633 33344444 7
Q ss_pred ceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 931 ETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 931 v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
|.+++|+|||++++++ .|++|++||+.+++++.. ..+|...|++++|+|||++|++++.||.|++||+.+++....+.
T Consensus 1088 v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~ 1166 (1249)
T 3sfz_A 1088 VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCA 1166 (1249)
T ss_dssp CCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-CCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCC
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee-eccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEec
Confidence 9999999999999995 889999999999998877 55899999999999999999999999999999999998876553
Q ss_pred cccccCC-CCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCC
Q 001403 1010 STAYLRP-TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1057 (1084)
Q Consensus 1010 ~~~~~~~-~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~ 1057 (1084)
+...... ..|...|. +++|+| |+.+|++++ |.|++||+.....
T Consensus 1167 ~~~~~~~~~~~~~~v~--~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1167 PISVEEGTATHGGWVT--DVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp CCC-------CCSCCC--EEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred cccccccccccCceEE--EEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence 2221111 11344444 688999 588998885 9999999966543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-57 Score=567.91 Aligned_cols=596 Identities=11% Similarity=0.096 Sum_probs=450.8
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 407 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~ 407 (1084)
....+|.+.|.+++|||||++||+|..| ++|+||+..+...... ..|...|.+++|+| |++||+++
T Consensus 11 ~~~~gh~~~V~~lafspdg~~lAsgs~D---------g~I~lw~~~~~~~~~~----~~~~~~V~~l~fsp-g~~L~S~s 76 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQNLLAIATVT---------GEVHIYGQQQVEVVIK----LEDRSAIKEMRFVK-GIYLVVIN 76 (902)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEETT---------SEEEEECSTTCEEEEE----CSSCCCEEEEEEET-TTEEEEEE
T ss_pred ccccCCCCCcEEEEECCCCCEEEEEeCC---------CEEEEEeCCCcEEEEE----cCCCCCEEEEEEcC-CCEEEEEE
Confidence 3446899999999999999999999988 9999999876544322 34788999999999 88999999
Q ss_pred CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee-----------eEeccC
Q 001403 408 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-----------YSFEGH 476 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~-----------~~~~~h 476 (1084)
.|++|+|||+.+++.+. .+. |.+.|++++|+|+++ ++++|+.||+|++||+++++.. ..+.+|
T Consensus 77 ~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h 150 (902)
T 2oaj_A 77 AKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAAR 150 (902)
T ss_dssp TTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSC
T ss_pred CcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccccccccccC
Confidence 99999999999987665 443 678999999999999 8999999999999999988764 344679
Q ss_pred CCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCC------------------CCeEEEEEEcCCCCEEEE
Q 001403 477 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------------------GLGCTRMAYSANGRRLFS 538 (1084)
Q Consensus 477 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~~~~s~d~~~l~~ 538 (1084)
.++|.+++|+|. ++..+++++.||.| +||+++.+....+..+ ...|.+++|+|+|++|++
T Consensus 151 ~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 228 (902)
T 2oaj_A 151 LSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIIT 228 (902)
T ss_dssp CCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEE
T ss_pred CCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEE
Confidence 999999999764 34689999999999 9999988777666554 357999999999999999
Q ss_pred EeeCCCCCeeEEEecCCCceEeee--ee---ccc----------cccCceEEEEEc----CCC-CEEEEEECC-----Cc
Q 001403 539 CGTSKEGESFLVEWNESEGAIKRT--YQ---GLQ----------LQHNSVSVVHFD----TAK-DQILAAGDD-----HV 593 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~~~~~~~~--~~---~~~----------~~~~~v~~~~~s----~~~-~~l~~~~~d-----g~ 593 (1084)
++. ++.|++||+.+++.+.. +. .|. .+...|.+++|+ |++ ..+++|+.| ..
T Consensus 229 gs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~ 304 (902)
T 2oaj_A 229 IHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQS 304 (902)
T ss_dssp EET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCC
T ss_pred EEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCce
Confidence 986 66799999999987653 21 121 023579999995 443 456667665 37
Q ss_pred EEEEECC------------------CCeEEEEEcCCCCCCCcceEEEec----------CCCEEEEEECCCeEEEEEcCC
Q 001403 594 IKIWDMN------------------KVQLLTTIDAGGGLPENPRICFNK----------NGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 594 i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~s~----------~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
+.+|++. +++....+... ....+..+++.+ +...+++++.|+.|++|++.+
T Consensus 305 v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~ 383 (902)
T 2oaj_A 305 LTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPS 383 (902)
T ss_dssp EEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTT
T ss_pred EEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCC
Confidence 8899842 22334444321 123467777755 345788999999999999987
Q ss_pred CCeee-------eccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceee
Q 001403 646 SNSVD-------AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 718 (1084)
Q Consensus 646 ~~~~~-------~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 718 (1084)
+.... .+..|...|+++++++. ..++|+.........
T Consensus 384 g~~~~~~~~~~~~l~~~~~~v~~~~~s~~---------------------------------~~~~w~~~~~~~~~~--- 427 (902)
T 2oaj_A 384 GIFTDKASLFPQNLSWLRPLATTSMAASV---------------------------------PNKLWLGALSAAQNK--- 427 (902)
T ss_dssp CCEECCGGGSCGGGTTBTTBEEEEEEEEE---------------------------------EHHHHHHHHHTTBCC---
T ss_pred CCcccccccCCCcccccCCCeeEEEEEEc---------------------------------CHHHHHHHHhcccCC---
Confidence 75432 23445566776666521 123444221111000
Q ss_pred ccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCcc
Q 001403 719 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 798 (1084)
Q Consensus 719 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 798 (1084)
..+..+|...+..++|+|+++.+++++.|++|++||+..+.... ..++... + ...+ ..+|...|.
T Consensus 428 ~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------~~~~~~~----l-~~~~-~~~h~~~V~ 492 (902)
T 2oaj_A 428 DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------NASFEVN----L-SRTL-NKAKELAVD 492 (902)
T ss_dssp CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------TBCEEEE----H-HHHT-TCSSSCCEE
T ss_pred CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC---------CceEEee----c-hhhc-CCCCCCcee
Confidence 11234567778889999999999999999999999987652200 0000000 0 0000 114888999
Q ss_pred EEEecCCCCEEEEEe-CCeEEEEEcCCc---------------------------------------------eeEEEEc
Q 001403 799 CFALSKNDAYLFSAS-GGVISLYIVMTF---------------------------------------------KTILTIM 832 (1084)
Q Consensus 799 ~l~~s~dg~~l~~~s-dg~i~vwd~~~~---------------------------------------------~~~~~~~ 832 (1084)
+++|+|||++||+++ ||+|++||+.++ +++..+.
T Consensus 493 svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 572 (902)
T 2oaj_A 493 KISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVH 572 (902)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEEC
T ss_pred EEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEE
Confidence 999999999999998 799999999876 2467888
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee-----eec-ccccCEEEEEEc-----CCC---CEEEEEeC
Q 001403 833 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-----KLE-GHSKRVTGLVFS-----DAL---NILVSSGG 898 (1084)
Q Consensus 833 ~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----pd~---~~l~s~s~ 898 (1084)
+|.+.|++++||| || +||+|+.|++|+|||+.++..+. .+. +|.+.|++++|+ ||| ++|++|+.
T Consensus 573 ~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~ 650 (902)
T 2oaj_A 573 ANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTD 650 (902)
T ss_dssp CCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEET
T ss_pred cCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEec
Confidence 9999999999999 88 99999999999999998877653 343 899999999999 885 89999999
Q ss_pred CCcEEEEeC---CCCceeeeeeeecCCCCccC--CCCceEEE-Ec----------------------cCCCEEEEEeCCe
Q 001403 899 DAQIFVWDV---DGWGIQTCRSLQTPDGVMTL--APSETHIQ-FH----------------------KDQTRFLLVHETH 950 (1084)
Q Consensus 899 dg~I~iwd~---~~~~~~~~~~~~~~~~~~~~--~~~v~~~~-~s----------------------~dg~~la~~~d~~ 950 (1084)
|++|++||+ .+|+... .+.+|... .+.|..++ |+ +++.+|+++ +..
T Consensus 651 D~tv~~wd~~p~~~g~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ 724 (902)
T 2oaj_A 651 MGEVITYKILPASGGKFDV-----QLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDD 724 (902)
T ss_dssp TSEEEEEEEEECGGGCEEE-----EEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSE
T ss_pred CCcEEEEEEecCCCCcEEE-----EecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccc
Confidence 999999999 6655322 22222210 13566665 65 556555555 889
Q ss_pred EEEEEcCCcceeeEeecCCCCCEEEE---E------EccCCCEEEEEeCCCcEEEEEcCCCceeEEecc
Q 001403 951 LAIYEAEELTCLKQWFPISSVPISQA---T------FSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1010 (1084)
Q Consensus 951 i~vwd~~~~~~~~~~~~~h~~~v~~l---~------fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1010 (1084)
|+||++.++++.+.. .+|...+.++ . |+++|..|++.+.||+|++|++.+++.+.....
T Consensus 725 ir~~~~~~~k~~~k~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~ 792 (902)
T 2oaj_A 725 IRLITLGKSKSTHKG-FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHI 792 (902)
T ss_dssp EEEECTTCCCEEEEE-CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred eEEEeCccccceeeE-cccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccC
Confidence 999999999998876 4566666676 5 789999999999999999999999999887763
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-57 Score=554.74 Aligned_cols=554 Identities=11% Similarity=0.113 Sum_probs=467.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCC----ccccceeeeeccccc-EeEEEeec--CCCcEEEEEEeCCC
Q 001403 385 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGN-VNDLAFSA--PCKQISVITCGDDK 457 (1084)
Q Consensus 385 ~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~----~~~~~~~~l~~h~~~-V~~l~~s~--d~~~l~l~s~~~d~ 457 (1084)
..|...|.+++|||||++||+++ ++.|+|||+.++ +... .+.+|.+. |++++|+| +++ +|++++.|+
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~dg 88 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDESG 88 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETTS
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCCC
Confidence 35889999999999999999998 789999999987 5444 78899999 99999999 999 899999999
Q ss_pred cEEEEECCCC--------ceeeEeccCCCcEEEEeecccCCCcEEEEEecC----CeEEEEECCCCCceEeecCCCCeEE
Q 001403 458 TIKVWDAVTG--------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCT 525 (1084)
Q Consensus 458 ~i~vwd~~~g--------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~i~ 525 (1084)
+|++||+.++ ..+..+..|..+|.+++|++ ++.+|++++.+ +.|++|| ..+....+..+...|.
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEE
Confidence 9999999855 67788899999999999954 77899999988 6788886 5677788888999999
Q ss_pred EEEEcCCCC-EEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccC---ceEEEEEcCC-CCEEEEEECCCcEEEEECC
Q 001403 526 RMAYSANGR-RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVVHFDTA-KDQILAAGDDHVIKIWDMN 600 (1084)
Q Consensus 526 ~~~~s~d~~-~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~ 600 (1084)
+++|+|+++ .+++++. ++.|++||..+++.+..+.+|. . .|.+++|+|+ ++++++++.||.|++||+.
T Consensus 165 ~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 237 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHH---KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 237 (615)
T ss_dssp EEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSS---CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred EEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccC---CCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence 999999998 7888775 6779999999999999999888 6 8999999999 9999999999999999999
Q ss_pred CCeEEEEE-c---CCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccc----cceeEEEEcCCCceee
Q 001403 601 KVQLLTTI-D---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS----DNLRKLSVNPISTVTG 672 (1084)
Q Consensus 601 ~~~~~~~~-~---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~i~~~~~~p~~~~~~ 672 (1084)
+++.+..+ . .+ ...|.+++|+ +++++++++.|+.|++||+.+++.+..+..+. ..+.++.+
T Consensus 238 ~~~~~~~~~~~~~~~--~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 306 (615)
T 1pgu_A 238 SGEFLKYIEDDQEPV--QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA-------- 306 (615)
T ss_dssp TCCEEEECCBTTBCC--CSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE--------
T ss_pred CCCEeEEeccccccc--CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe--------
Confidence 99999888 3 34 3469999999 99999999999999999999998887776653 33333333
Q ss_pred eeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEE
Q 001403 673 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 752 (1084)
Q Consensus 673 ~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~v 752 (1084)
+++..+++++.++.+++|++....... .+ ..|...|.+++| |+ +++++.||.+++
T Consensus 307 ---------------~~~~~l~~~~~~g~i~~~d~~~~~~~~----~~--~~~~~~v~~~~~-~~---l~~~~~dg~i~~ 361 (615)
T 1pgu_A 307 ---------------TGNGRIISLSLDGTLNFYELGHDEVLK----TI--SGHNKGITALTV-NP---LISGSYDGRIME 361 (615)
T ss_dssp ---------------EETTEEEEEETTSCEEEEETTEEEEEE----EE--CCCSSCEEEEET-TT---TEEEETTSCEEE
T ss_pred ---------------CCCCeEEEEECCCCEEEEECCCCcEEE----EE--eCCCCCEEEEEe-cC---cEEECCCCeEEE
Confidence 367889999999999999987533221 11 348889999999 88 999999999999
Q ss_pred eeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEE
Q 001403 753 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI 831 (1084)
Q Consensus 753 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~ 831 (1084)
|++. ++. ..|...|.+++| +++..+++++ ++.+++||+.+++...
T Consensus 362 w~~~-------------------------~~~------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~-- 407 (615)
T 1pgu_A 362 WSSS-------------------------SMH------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS-- 407 (615)
T ss_dssp TTTT-------------------------EEE------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS--
T ss_pred EEch-------------------------hhc------CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC--
Confidence 9753 011 248899999999 5566677666 8999999998765432
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCC
Q 001403 832 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGW 910 (1084)
Q Consensus 832 ~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~-dg~I~iwd~~~~ 910 (1084)
.+.+++|+| ++.+++++ .++.+.+|+..+++.+..+. |...+.+++|+ +++|++++. |+.|++||+.++
T Consensus 408 -----~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~ 477 (615)
T 1pgu_A 408 -----QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDL 477 (615)
T ss_dssp -----CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEE
T ss_pred -----CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCc
Confidence 678999999 88888877 88999999999999888887 88999999999 899999999 999999999985
Q ss_pred ceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEcc---------
Q 001403 911 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSC--------- 980 (1084)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~--------- 980 (1084)
+... ....+|.. .|.+++|+|+|++|+++ .|+.|++||+.+++.+..+...|...|++++|+|
T Consensus 478 ~~~~----~~~~~~~~---~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~ 550 (615)
T 1pgu_A 478 EVSF----DLKTPLRA---KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEE 550 (615)
T ss_dssp EEEE----ECSSCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------C
T ss_pred cccc----cccCCccC---ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccc
Confidence 4221 44445554 89999999999999995 7899999999999998875544999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEEcCCC-ceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 981 -DCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 981 -dg~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
|+++|++++.||.|++||+.++ +.+..+. .|...|. +++|+| |+. |++++.||.|++|++..
T Consensus 551 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------~h~~~v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 551 IEEDLVATGSLDTNIFIYSVKRPMKIIKALN--------AHKDGVN--NLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp CSCCEEEEEETTSCEEEEESSCTTCCEEETT--------SSTTCEE--EEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred cCCCEEEEEcCCCcEEEEECCCCceechhhh--------cCccceE--EEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 9999999999999999999998 5555544 1344455 678888 477 99999999999999853
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-56 Score=555.28 Aligned_cols=596 Identities=9% Similarity=0.045 Sum_probs=437.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
..||...|++++|+|||++||+|+.||+|+||+..+++... ...|...|.+++|+| |+ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 44699999999999999999999999999999998765432 235788999999999 77 899999999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCce-----------EeecCCCCeEEEEEEcCC
Q 001403 464 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----------VDYDAPGLGCTRMAYSAN 532 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-----------~~~~~~~~~i~~~~~s~d 532 (1084)
+++++++..+. |...|++++|+| ++.++++|+.||.|++||+++.... .....|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99999998886 778999999955 6789999999999999999876542 223557779999999996
Q ss_pred C-CEEEEEeeCCCCCeeEEEecCCCceEeeeeecc---------------ccccCceEEEEEcCCCCEEEEEECCCcEEE
Q 001403 533 G-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------------QLQHNSVSVVHFDTAKDQILAAGDDHVIKI 596 (1084)
Q Consensus 533 ~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~---------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 596 (1084)
+ ..+++++. ++.| +||+++++.+..+..| ..|...|.+++|+|++++|++++.||+|++
T Consensus 163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 67777654 6779 9999999998888766 112367999999999999999999999999
Q ss_pred EECCCCeEEEEEcC-----CC-----------CCCCcceEEEec----CC-CEEEEEECC-----CeEEEEEcCC-----
Q 001403 597 WDMNKVQLLTTIDA-----GG-----------GLPENPRICFNK----NG-TLLAVIANE-----NRIKILETPE----- 645 (1084)
Q Consensus 597 wd~~~~~~~~~~~~-----~~-----------~~~~v~~v~~s~----~~-~~l~~~~~d-----g~i~iwd~~~----- 645 (1084)
||+.+++++..... +. +...|.+++|++ ++ .++++++.+ +.+.+|++..
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~ 317 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS 317 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence 99999988765221 21 123588999964 43 567777665 3788888531
Q ss_pred -------------CCeeeecc-ccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeec
Q 001403 646 -------------SNSVDAAG-VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 711 (1084)
Q Consensus 646 -------------~~~~~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~ 711 (1084)
.+....+. .+...+..+.+.+.......+ ..++..+++++.|+++++|++..+.
T Consensus 318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g------------~~d~~~l~~~s~dg~l~~~~~~~g~ 385 (902)
T 2oaj_A 318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAG------------CHNPGLILLILGNGEIETMLYPSGI 385 (902)
T ss_dssp GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHH------------TBSCSEEEEEETTSCEEEEETTTCC
T ss_pred ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCC------------CCCceeEEEEcCCCcEEEEECCCCC
Confidence 11222222 233445555544311100000 1244567888889999999985321
Q ss_pred Cccc-eeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcC
Q 001403 712 PSEC-QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 790 (1084)
Q Consensus 712 ~~~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1084)
.... .........|...|.++++++... .+|+..... . +... ..+.
T Consensus 386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----------~~w~~~~~~------------------~-~~~~--~~l~- 432 (902)
T 2oaj_A 386 FTDKASLFPQNLSWLRPLATTSMAASVPN-----------KLWLGALSA------------------A-QNKD--YLLK- 432 (902)
T ss_dssp EECCGGGSCGGGTTBTTBEEEEEEEEEEH-----------HHHHHHHHT------------------T-BCCC--CSCC-
T ss_pred cccccccCCCcccccCCCeeEEEEEEcCH-----------HHHHHHHhc------------------c-cCCC--Cccc-
Confidence 1110 000111123557888888865332 234321100 0 0000 0122
Q ss_pred CCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeE----EE--Ec-----CCCCCeEEEEEcCCCCcEEEEEeCCC
Q 001403 791 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI----LT--IM-----PPSPTATSLAFNPHDNNVIAIGMDDS 858 (1084)
Q Consensus 791 ~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~----~~--~~-----~~~~~i~~l~~s~~d~~~la~g~~dg 858 (1084)
+|...+..++|+||+++|++++ |++|++||+.++... .. +. +|...|.+++|+| ++++||+|+.||
T Consensus 433 -G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~Dg 510 (902)
T 2oaj_A 433 -GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETG 510 (902)
T ss_dssp -CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTS
T ss_pred -CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCc
Confidence 4777888899999999999998 899999999887421 11 11 7888999999999 899999999999
Q ss_pred eEEEEEcCCce---------------------------------------------eeeeecccccCEEEEEEcCCCCEE
Q 001403 859 TILIYNARSSE---------------------------------------------VISKLEGHSKRVTGLVFSDALNIL 893 (1084)
Q Consensus 859 ~i~iwd~~~~~---------------------------------------------~~~~l~~h~~~V~~l~~spd~~~l 893 (1084)
+|+|||+.+++ ++..+.+|.+.|++++||||| +|
T Consensus 511 tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~l 589 (902)
T 2oaj_A 511 DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FV 589 (902)
T ss_dssp CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EE
T ss_pred EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EE
Confidence 99999998762 467788999999999999999 99
Q ss_pred EEEeCCCcEEEEeCCCCceeeeeeeecCC-CCccCCCCceEEEEc-----cCC---CEEEE-EeCCeEEEEEc---CCcc
Q 001403 894 VSSGGDAQIFVWDVDGWGIQTCRSLQTPD-GVMTLAPSETHIQFH-----KDQ---TRFLL-VHETHLAIYEA---EELT 960 (1084)
Q Consensus 894 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s-----~dg---~~la~-~~d~~i~vwd~---~~~~ 960 (1084)
|+|+.|++|+|||+.+........+.... +|.. .|++++|| ||| ++|++ +.|++|++||+ .+|+
T Consensus 590 Asgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~---~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 590 GIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA---CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC---CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred EEEeCCCcEEEEECCCCeEEEEeehhHhcccccc---ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence 99999999999999886543221223443 6655 89999999 886 88888 58899999999 7888
Q ss_pred eeeEeecCC-----CCCEEEEE-Ec----------------------cCCCEEEEEeCCCcEEEEEcCCCceeEEecccc
Q 001403 961 CLKQWFPIS-----SVPISQAT-FS----------------------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1012 (1084)
Q Consensus 961 ~~~~~~~~h-----~~~v~~l~-fs----------------------~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~ 1012 (1084)
+...+. +| .++|.+++ |+ ++|..|+++ +..||||++.++++......
T Consensus 667 ~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~-- 741 (902)
T 2oaj_A 667 FDVQLM-DITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFK-- 741 (902)
T ss_dssp EEEEEE-EEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECS--
T ss_pred EEEEec-CceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcc--
Confidence 776643 44 57888877 76 556555543 77899999999988766531
Q ss_pred ccCCCCcccceeee-EEE------ECCCCCCEEEEEeCCCcEEEEcCCCCCC
Q 001403 1013 YLRPTTSCLHVYPH-AIA------AHPLKPTQFAVGLTNGEVYVIEPNEPGD 1057 (1084)
Q Consensus 1013 ~~~~~~~~~~v~~~-~~~------~~p~d~~~l~~~~~dg~v~vw~~~~~~~ 1057 (1084)
|...+..+ .+. |++ ++..|++++.||+|++|++.+-+.
T Consensus 742 ------~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~ 786 (902)
T 2oaj_A 742 ------YPLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKE 786 (902)
T ss_dssp ------SCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCE
T ss_pred ------cceeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHH
Confidence 11222222 124 566 578999999999999999977664
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-47 Score=480.77 Aligned_cols=558 Identities=14% Similarity=0.183 Sum_probs=425.7
Q ss_pred eeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 405 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 405 (1084)
..+++.+|++.|.+++|||||++||++..| +.|+|||+.++..... +.+|...|.+++|+|+|++||+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~---------g~v~iwd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~ 72 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYS---------GRVEIWNYETQVEVRS---IQVTETPVRAGKFIARKNWIIV 72 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTTEEEEE---EECCSSCEEEEEEEGGGTEEEE
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCC---------CEEEEEECCCCceEEE---EecCCCcEEEEEEeCCCCEEEE
Confidence 457889999999999999999999999877 9999999988665433 6689999999999999999999
Q ss_pred EeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-ceeeEeccCCCcEEEEe
Q 001403 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLC 484 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g-~~~~~~~~h~~~v~~~~ 484 (1084)
++.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ ++++++.|++|++||+.++ .....+.+|...|.+++
T Consensus 73 ~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~ 147 (814)
T 3mkq_A 73 GSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147 (814)
T ss_dssp EETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEE
T ss_pred EeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEE
Confidence 9999999999999987655 6789999999999999999 8999999999999999987 67788899999999999
Q ss_pred ecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCC-CeEEEEEEcC--CCCEEEEEeeCCCCCeeEEEecCCCceEee
Q 001403 485 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKR 561 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~--d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 561 (1084)
|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++||..+++.+.
T Consensus 148 ~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~~ 222 (814)
T 3mkq_A 148 FNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQTKSCVA 222 (814)
T ss_dssp EETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEETTTTEEEE
T ss_pred EEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEECCCCcEEE
Confidence 9652 55799999999999999998887777666554 7899999999 9999999875 6779999999999999
Q ss_pred eeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCE-EEEEECCCeEEE
Q 001403 562 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL-LAVIANENRIKI 640 (1084)
Q Consensus 562 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~~~~~dg~i~i 640 (1084)
.+.+|. ..|.+++|+|+++++++++.||.|++||+.+++.+..+..+.. .+.+++|+|++.. +++++.++.+.+
T Consensus 223 ~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~ 297 (814)
T 3mkq_A 223 TLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGFDNGFTV 297 (814)
T ss_dssp EEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEEETTEEEE
T ss_pred EEcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEEeCCCEEE
Confidence 998887 8999999999999999999999999999999999999886644 6899999999873 244445677889
Q ss_pred EEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcc---------ccccceeec
Q 001403 641 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS---------EVEKPLFAR 711 (1084)
Q Consensus 641 wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i---------~~w~~~~~~ 711 (1084)
|++...... +.++|.+. .+++++.+... ..|++....
T Consensus 298 ~~~~~~~~~------------~~~~~~g~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (814)
T 3mkq_A 298 LSLGNDEPT------------LSLDPVGK----------------------LVWSGGKNAAASDIFTAVIRGNEEVEQDE 343 (814)
T ss_dssp EECSCCSCC------------EEECSSSE----------------------EEEECCTTSCTTCEEEEECCSCCCCCSSS
T ss_pred EEcCCCCce------------eEECCCCC----------------------EEEECcccccceeeeeeecccccccccCc
Confidence 987755322 33443333 33333222210 112222211
Q ss_pred CccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCC
Q 001403 712 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 791 (1084)
Q Consensus 712 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1084)
......... ..+...+.+++|+|+|+.+++++ +|.+.+|++.....
T Consensus 344 ~~~~~~~~~--~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~------------------------------- 389 (814)
T 3mkq_A 344 PLSLQTKEL--GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN------------------------------- 389 (814)
T ss_dssp CBCCCCEEE--CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE-------------------------------
T ss_pred cceeeeecC--CCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc-------------------------------
Confidence 111111111 22456788999999999888887 89999998532110
Q ss_pred CCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCC---cEEEEEeCCCeEEEEEcCC
Q 001403 792 NSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN---NVIAIGMDDSTILIYNARS 867 (1084)
Q Consensus 792 ~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~---~~la~g~~dg~i~iwd~~~ 867 (1084)
.+...+.+++|+|||+++++++ ++.+++|+.. .+|...+.+++|+| ++ .+|++++.|+.|++||+.+
T Consensus 390 ~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~--------~~~~~~v~~~~~s~-dg~~~~~l~~~~~d~~v~~~d~~~ 460 (814)
T 3mkq_A 390 KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNF--------KEVTSWSVPMHSAI-DRLFSGALLGVKSDGFVYFFDWDN 460 (814)
T ss_dssp EEEEECSEEEECTTSSCEEEECTTCCEEEEETT--------EECTTCCCCCSSCC-CEEECSSSEEEEETTEEEEECTTT
T ss_pred cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECC--------CCccceEEcCCcCc-cceecceEEEEecCCEEEEEECCc
Confidence 1345688999999999999997 6999999632 34667888999999 77 5888899999999999999
Q ss_pred ceeeeeecccccCEEEEEEcCCCCEEEEE------eCCCcEEEEeCCC---------------CceeeeeeeecCCCCcc
Q 001403 868 SEVISKLEGHSKRVTGLVFSDALNILVSS------GGDAQIFVWDVDG---------------WGIQTCRSLQTPDGVMT 926 (1084)
Q Consensus 868 ~~~~~~l~~h~~~V~~l~~spd~~~l~s~------s~dg~I~iwd~~~---------------~~~~~~~~~~~~~~~~~ 926 (1084)
++.+..+.+|.. .++|+|||++|+++ +.++.+.+|--.. +.......+...
T Consensus 461 ~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 532 (814)
T 3mkq_A 461 GTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYEL----- 532 (814)
T ss_dssp CCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEE-----
T ss_pred CcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeeeEe-----
Confidence 999999998875 89999999999999 6666555554210 000000111110
Q ss_pred CCCCceEEEEccCCCEEEEEe-CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001403 927 LAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 927 ~~~~v~~~~~s~dg~~la~~~-d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
...+.+..|. +..++... .+.+..+. .++... ......++..+.|.+++..++....++.+++|++...
T Consensus 533 -~~~i~s~~w~--~~~~i~~t~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~ 602 (814)
T 3mkq_A 533 -SESITSGKWV--GDVFIFTTATNRLNYFV--GGKTYN--LAHYTKEMYLLGYLARDNKVYLADREVHVYGYEISLE 602 (814)
T ss_dssp -CSCCSEEEEE--TTEEEEECTTSEEEEEE--TTEEEE--EEECSSCCEEEEEEGGGTEEEEECTTCCEEEEECCHH
T ss_pred -ccEEEeeEEe--CCEEEEEcCCCeEEEEe--CCeeEE--EEECCccEEEEEEEecCCEEEEEcCCCCEEEEEECcH
Confidence 1135566664 33443332 34444432 222211 1123556777788899999999999999999998754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=473.51 Aligned_cols=562 Identities=14% Similarity=0.163 Sum_probs=426.4
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
.+.+|...|.+++|||||++||+++.||.|+|||+.+++.+. .+.+|.++|.+++|+|+++ +|++++.|+.|++|
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 367899999999999999999999999999999999987655 6779999999999999999 89999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC-CceEeecCCCCeEEEEEEcC-CCCEEEEEe
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCG 540 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~ 540 (1084)
|+.+++.+..+.+|.+.|.+++|++ ++.+|++++.||.|++||+++. .....+..+...+.+++|+| +++.+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 9999999999999999999999955 6789999999999999999887 45567788889999999999 888999987
Q ss_pred eCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcC--CCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcc
Q 001403 541 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 618 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 618 (1084)
. ++.|++||+.++.....+..+. ...+..++|+| ++.++++++.||.|++||+.+++.+..+..+.. .|.
T Consensus 161 ~----dg~v~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~ 232 (814)
T 3mkq_A 161 L----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVS 232 (814)
T ss_dssp T----TSEEEEEETTCSSCSEEEECCC--TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEE
T ss_pred C----CCeEEEEECCCCcceeEEecCC--CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEE
Confidence 6 6779999999888777776554 36799999999 999999999999999999999999998886644 689
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCc-cceec
Q 001403 619 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP-EISVE 697 (1084)
Q Consensus 619 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~ 697 (1084)
+++|+|+++++++++.||.|++||..+++....+..+...+.+++++| ++.. +++.+
T Consensus 233 ~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~----------------------~~~~~~~~~~ 290 (814)
T 3mkq_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP----------------------TGRKNYIASG 290 (814)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECT----------------------TCGGGEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEcc----------------------CCCceEEEEE
Confidence 999999999999999999999999999999999999999999999985 4433 25555
Q ss_pred ccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCce-EEeeccCCccCcCcccceecCCeeec
Q 001403 698 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH-LMWRWPRNDLTLSTEATTKVPPRLYQ 776 (1084)
Q Consensus 698 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i-~vw~~~~~~~~~~~~~~~~~~~~~~~ 776 (1084)
.++.+.+|++.. ....+.++|+|+.+++++.+... .++... ....|+
T Consensus 291 ~~~~~~~~~~~~------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 338 (814)
T 3mkq_A 291 FDNGFTVLSLGN------------------DEPTLSLDPVGKLVWSGGKNAAASDIFTAV--------------IRGNEE 338 (814)
T ss_dssp ETTEEEEEECSC------------------CSCCEEECSSSEEEEECCTTSCTTCEEEEE--------------CCSCCC
T ss_pred eCCCEEEEEcCC------------------CCceeEECCCCCEEEECcccccceeeeeee--------------cccccc
Confidence 566777777542 12346788999988877665321 111100 011233
Q ss_pred CCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeC
Q 001403 777 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 856 (1084)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~ 856 (1084)
+..+............+...+.+++|+|+|+++++++++.+.+|++....... .+.+.+++|+| +++++|+++.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~sp-dg~~la~~~~ 412 (814)
T 3mkq_A 339 VEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVWGP-DSNSYALIDE 412 (814)
T ss_dssp CCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEECT-TSSCEEEECT
T ss_pred cccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEEeC-CCCeEEEEeC
Confidence 33333222211111236678899999999999999999999999987654432 34678999999 8999999999
Q ss_pred CCeEEEEEcCCceeeeeecccccCEEEEEEcCCC---CEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceE
Q 001403 857 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 933 (1084)
Q Consensus 857 dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~---~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 933 (1084)
+|.|++|+ .+.+|...+.+++|+||+ .+|++++.|++|++||+.+++ .+.....+. ..
T Consensus 413 ~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~-----~~~~~~~~~------~~ 473 (814)
T 3mkq_A 413 TGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGT-----LVRRIDVNA------KD 473 (814)
T ss_dssp TCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCC-----EEEEESSCE------EE
T ss_pred CCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCc-----EEEEEecCC------CE
Confidence 99999995 346688889999999998 689999999999999999865 333334332 28
Q ss_pred EEEccCCCEEEEE------eCCeEEEEEcCCccee-----------------eEeecCCCCCEEEEEEccCCCEEEEEeC
Q 001403 934 IQFHKDQTRFLLV------HETHLAIYEAEELTCL-----------------KQWFPISSVPISQATFSCDCRMVFTSFV 990 (1084)
Q Consensus 934 ~~~s~dg~~la~~------~d~~i~vwd~~~~~~~-----------------~~~~~~h~~~v~~l~fs~dg~~l~t~~~ 990 (1084)
++|+|||++|+++ .++.+.+|....+... ..........|.+.+|. +..++..+.
T Consensus 474 v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~--~~~~i~~t~ 551 (814)
T 3mkq_A 474 VIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWV--GDVFIFTTA 551 (814)
T ss_dssp EEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEE--TTEEEEECT
T ss_pred EEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeeeEeccEEEeeEEe--CCEEEEEcC
Confidence 9999999999997 6666666643321110 00011112234445553 223333322
Q ss_pred CCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 991 DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 991 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
.+.+..+ ..++.. .+. .+ ...++ .+.|.+ +++.++....++.+..|++..
T Consensus 552 ~~~~~~~--~~~~~~-~~~---~~-----~~~~~--~~~~~~-~~~~l~~~d~~~~~~~~~l~~ 601 (814)
T 3mkq_A 552 TNRLNYF--VGGKTY-NLA---HY-----TKEMY--LLGYLA-RDNKVYLADREVHVYGYEISL 601 (814)
T ss_dssp TSEEEEE--ETTEEE-EEE---EC-----SSCCE--EEEEEG-GGTEEEEECTTCCEEEEECCH
T ss_pred CCeEEEE--eCCeeE-EEE---EC-----CccEE--EEEEEe-cCCEEEEEcCCCCEEEEEECc
Confidence 2333332 122211 111 01 11233 244555 478999999999999999753
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-45 Score=415.30 Aligned_cols=288 Identities=22% Similarity=0.363 Sum_probs=266.4
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 407 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~ 407 (1084)
..|.+|.+.|.+++|+|++++||+|+.| ++|+|||+.++.... .+.+|...|.+++|+|+|++||+|+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~D---------g~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~~l~sgs 169 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASED---------ATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGKLLASCS 169 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESS---------SCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCCEEEEEe
Confidence 3578999999999999999999999988 999999999876543 3788999999999999999999999
Q ss_pred CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecc
Q 001403 408 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 487 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~ 487 (1084)
.|++|++||+.+++++. .+.+|...|.+++|+|+++ ++++|+.|++|++||+.++.++.++.+|...|.++.++
T Consensus 170 ~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~- 243 (410)
T 1vyh_C 170 ADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN- 243 (410)
T ss_dssp TTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC-
T ss_pred CCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEEC-
Confidence 99999999999887655 6789999999999999999 89999999999999999999999999999999999985
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCC--------------------CCEEEEEeeCCCCCe
Q 001403 488 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN--------------------GRRLFSCGTSKEGES 547 (1084)
Q Consensus 488 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d--------------------~~~l~~~~~~~~~~~ 547 (1084)
+++.++++++.||+|++||+.+......+..+...|.+++|+|+ |.++++++. ++
T Consensus 244 -~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~----D~ 318 (410)
T 1vyh_C 244 -QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR----DK 318 (410)
T ss_dssp -TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET----TS
T ss_pred -CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC----CC
Confidence 47789999999999999999999998999999999999999996 678999886 67
Q ss_pred eEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC
Q 001403 548 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 627 (1084)
Q Consensus 548 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 627 (1084)
.|++||+.+++++..+.+|. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..|.. .|.+++|+|++.
T Consensus 319 ~i~iwd~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~ 393 (410)
T 1vyh_C 319 TIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTAP 393 (410)
T ss_dssp EEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSSSS
T ss_pred eEEEEECCCCceEEEEECCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcCCCC
Confidence 79999999999999999988 8999999999999999999999999999999999999987654 699999999999
Q ss_pred EEEEEECCCeEEEEEc
Q 001403 628 LLAVIANENRIKILET 643 (1084)
Q Consensus 628 ~l~~~~~dg~i~iwd~ 643 (1084)
+|++|+.|+.|++|+.
T Consensus 394 ~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 394 YVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CEEEEETTSEEEEEC-
T ss_pred EEEEEeCCCcEEEEeC
Confidence 9999999999999985
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-40 Score=359.42 Aligned_cols=294 Identities=16% Similarity=0.257 Sum_probs=266.4
Q ss_pred ceeeecccCCCCceEEEEcCC----CceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCC
Q 001403 325 TVAQTLIEGSSSPMSMDFHPV----QHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 400 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spd----g~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg 400 (1084)
...+.+.+|.+.|++++|+|+ +.+||+|+.| ++|+||++.+....... .+.+|...|.+++|+|++
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D---------~~v~vW~~~~~~~~~~~-~l~gh~~~v~~~~~~~~~ 92 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLD---------DLVKVWKWRDERLDLQW-SLEGHQLGVVSVDISHTL 92 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETT---------SCEEEEEEETTEEEEEE-EECCCSSCEEEEEECSSS
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCC---------CCEEEEECCCCCeeeee-eeccCCCCEEEEEECCCC
Confidence 345677899999999999985 6799999999 99999999765543332 378999999999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001403 401 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 480 (1084)
Q Consensus 401 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v 480 (1084)
.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++++.|+.|++||+++++....+..|...|
T Consensus 93 ~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v 167 (321)
T 3ow8_A 93 PIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLDTRGKFI 167 (321)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEEECSSSCE
T ss_pred CEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEecCCCceE
Confidence 999999999999999999987655 6778889999999999999 89999999999999999999999999999999
Q ss_pred EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 481 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 481 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
.+++|+| ++++|++++.||.|++||+.+++....+..+...|.+++|+|++++|++++. ++.|++||+.+++..
T Consensus 168 ~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iwd~~~~~~~ 241 (321)
T 3ow8_A 168 LSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIYDVQHANLA 241 (321)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEEETTTCCEE
T ss_pred EEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEEECCCccee
Confidence 9999954 7789999999999999999999888889999999999999999999999976 667999999999999
Q ss_pred eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEE
Q 001403 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 640 (1084)
Q Consensus 561 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 640 (1084)
..+.+|. ..|.+++|+|++++|++++.|++|++||+.+++++..+..+.. .|.+++|+|++++|++++.|+.|++
T Consensus 242 ~~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~~l~s~~~d~~i~v 316 (321)
T 3ow8_A 242 GTLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSVGDDQEIHI 316 (321)
T ss_dssp EEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTCCEEE
T ss_pred EEEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEEEeCCCeEEE
Confidence 9999988 8999999999999999999999999999999999999986644 6999999999999999999999999
Q ss_pred EEcC
Q 001403 641 LETP 644 (1084)
Q Consensus 641 wd~~ 644 (1084)
||.+
T Consensus 317 wd~p 320 (321)
T 3ow8_A 317 YDCP 320 (321)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9964
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-39 Score=358.80 Aligned_cols=296 Identities=18% Similarity=0.254 Sum_probs=265.1
Q ss_pred ccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCE
Q 001403 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 402 (1084)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 402 (1084)
+....++|.+|.+.|.+++|+|||++||+++.| ++|+|||+.+...... +..|...|.+++|+|+|++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~D---------g~v~iWd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~ 111 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQD---------GKLIIWDSYTTNKVHA---IPLRSSWVMTCAYAPSGNY 111 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETT---------TEEEEEETTTCCEEEE---EECSSSCEEEEEECTTSSE
T ss_pred cchhheeecCCCCceEEEEECCCCCEEEEEeCC---------CcEEEEECCCCCcceE---eecCCccEEEEEECCCCCE
Confidence 345678899999999999999999999999988 9999999987765433 5679999999999999999
Q ss_pred EEEEeCCCEEEEEEccCCcc-ccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEE
Q 001403 403 LGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 481 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~ 481 (1084)
||+|+.|+.|++||+.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+++++.+..+.+|.+.|.
T Consensus 112 l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~ 188 (340)
T 1got_B 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188 (340)
T ss_dssp EEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCCCCceE
Confidence 99999999999999987642 233446789999999999999875 88999999999999999999999999999999
Q ss_pred EEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEee
Q 001403 482 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 561 (1084)
Q Consensus 482 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 561 (1084)
+++|+| ++.++++++.||.|++||+.+......+..|...|.+++|+|+++++++++. ++.|++||+++++.+.
T Consensus 189 ~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~~~~~~~~ 262 (340)
T 1got_B 189 SLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLRADQELM 262 (340)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEE
T ss_pred EEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEECCCCcEEE
Confidence 999965 6789999999999999999999989999999999999999999999999986 6679999999988877
Q ss_pred eeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEE
Q 001403 562 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 641 (1084)
Q Consensus 562 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 641 (1084)
.+.... +...|.+++|+|+++++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|++.+|++++.|+.|++|
T Consensus 263 ~~~~~~-~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 263 TYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp EECCTT-CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EEccCC-cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEcCCccEEec
Confidence 765322 235799999999999999999999999999999999999887654 69999999999999999999999999
Q ss_pred E
Q 001403 642 E 642 (1084)
Q Consensus 642 d 642 (1084)
|
T Consensus 340 d 340 (340)
T 1got_B 340 N 340 (340)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-39 Score=359.64 Aligned_cols=298 Identities=17% Similarity=0.234 Sum_probs=267.1
Q ss_pred cceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
....++|.+|.+.|.+++|+|||++||+++.| ++|+|||..+...... +..|...|.+++|+|+|.+|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~D---------g~v~vWd~~~~~~~~~---~~~~~~~v~~~~~sp~g~~l 121 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQD---------GKVIVWDSFTTNKEHA---VTMPCTWVMACAYAPSGCAI 121 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETT---------SEEEEEETTTCCEEEE---EECSSSCCCEEEECTTSSEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCC---------CeEEEEECCCCCcceE---EecCCCCEEEEEECCCCCEE
Confidence 45678899999999999999999999999998 9999999987655433 55688999999999999999
Q ss_pred EEEeCCCEEEEEEccCCcc---ccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001403 404 GVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 480 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~---~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v 480 (1084)
|+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .+++++.|++|++||+++++.+.++.+|...|
T Consensus 122 asg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v 199 (354)
T 2pbi_B 122 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFHGHGADV 199 (354)
T ss_dssp EEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred EEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCe
Confidence 9999999999999875421 223346778999999999999999 79999999999999999999999999999999
Q ss_pred EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 481 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 481 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
.++++++++++.+|++++.||.|++||+++++....+..|...|.+++|+|+++++++++. ++.|++||+++++.+
T Consensus 200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd~~~~~~~ 275 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYDLRADREV 275 (354)
T ss_dssp EEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEE
T ss_pred EEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEECCCCcEE
Confidence 9999988878899999999999999999999998899999999999999999999999986 667999999998887
Q ss_pred eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEE
Q 001403 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 640 (1084)
Q Consensus 561 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 640 (1084)
..+..+. ....+.+++|+|++.++++|+.|+.|++||+.+++.+..+..|.. .|.+++|+|+|++|++++.|+.|++
T Consensus 276 ~~~~~~~-~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sgs~D~~v~v 352 (354)
T 2pbi_B 276 AIYSKES-IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSGSWDHTLRV 352 (354)
T ss_dssp EEECCTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEEETTSEEEE
T ss_pred EEEcCCC-cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEEcCCCCEEe
Confidence 7665433 224689999999999999999999999999999999988876644 6999999999999999999999999
Q ss_pred EE
Q 001403 641 LE 642 (1084)
Q Consensus 641 wd 642 (1084)
|+
T Consensus 353 W~ 354 (354)
T 2pbi_B 353 WA 354 (354)
T ss_dssp EC
T ss_pred cC
Confidence 95
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=348.53 Aligned_cols=293 Identities=17% Similarity=0.304 Sum_probs=256.3
Q ss_pred ceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEE
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 404 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la 404 (1084)
...+++.+|.+.|.+++|||||++||+++.| ++|+|||+.++..... +.+|...|.+++|+|++++|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~d---------g~v~lWd~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~ 71 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYS---------GRVELWNYETQVEVRS---IQVTETPVRAGKFIARKNWII 71 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTTEEEEE---EECCSSCEEEEEEEGGGTEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCC---------CcEEEEECCCCceeEE---eeccCCcEEEEEEeCCCCEEE
Confidence 3467899999999999999999999999988 9999999988765433 677999999999999999999
Q ss_pred EEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-ceeeEeccCCCcEEEE
Q 001403 405 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSL 483 (1084)
Q Consensus 405 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g-~~~~~~~~h~~~v~~~ 483 (1084)
+|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++|+.|++|++||++++ .....+.+|...|.++
T Consensus 72 s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v 146 (304)
T 2ynn_A 72 VGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146 (304)
T ss_dssp EEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEE
T ss_pred EECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEE
Confidence 99999999999999987655 7889999999999999999 8999999999999999988 4557789999999999
Q ss_pred eecccCCCcEEEEEecCCeEEEEECCCCCceEeec-CCCCeEEEEEEcC--CCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 484 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~--d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
+|+|. ++..|++++.||+|++||+........+. .+...+..+.|+| ++++|++++. ++.|++||+++++++
T Consensus 147 ~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iWd~~~~~~~ 221 (304)
T 2ynn_A 147 AFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQTKSCV 221 (304)
T ss_dssp EECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEEETTTTEEE
T ss_pred EECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEEeCCCCccc
Confidence 99763 45799999999999999998877665554 4556788888876 7889999986 778999999999999
Q ss_pred eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC--EEEEEECCCeE
Q 001403 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLAVIANENRI 638 (1084)
Q Consensus 561 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i 638 (1084)
..+.+|. ..|.+++|+|++++|++|+.||+|++||..+++.+..+..+.. .+.+++|+|++. ++++|+.+ .+
T Consensus 222 ~~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~asg~~~-g~ 295 (304)
T 2ynn_A 222 ATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGFDN-GF 295 (304)
T ss_dssp EEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSS--SEEEEEECTTCGGGCEEEEETT-EE
T ss_pred eeeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCc--cEEEEEECCCCCceEEEEecCC-ce
Confidence 9999998 8999999999999999999999999999999999999986543 588999999875 57777655 57
Q ss_pred EEEEcCC
Q 001403 639 KILETPE 645 (1084)
Q Consensus 639 ~iwd~~~ 645 (1084)
.+|++..
T Consensus 296 ~~~~~~~ 302 (304)
T 2ynn_A 296 TVLSLGN 302 (304)
T ss_dssp EEEECC-
T ss_pred EEEEecc
Confidence 7777654
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=347.94 Aligned_cols=298 Identities=19% Similarity=0.250 Sum_probs=259.8
Q ss_pred ceeeecccCCCCceEEEEcCCC-ceeeeecccccCccccccceEEEEEcCCccccc--eeeeecCCCCCeEEEEEcCCCC
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQ-HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLF--KTALVRDPGVSVNRVVWSPDGS 401 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg-~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~--~~~~~~~h~~~V~~v~fspdg~ 401 (1084)
.+..+|.+|.+.|.+++|+|++ ++||+++.| ++|++|++....... ....+.+|...|.+++|+|||+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D---------~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~ 78 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRD---------KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA 78 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETT---------SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCC---------ccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC
Confidence 3456889999999999999976 899999999 999999997543321 2334789999999999999999
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEE
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 481 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~ 481 (1084)
+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|++|++||++ +.++..+.+|...|.
T Consensus 79 ~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~ 152 (319)
T 3frx_A 79 YALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVS 152 (319)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCCSSCEE
T ss_pred EEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEE
Confidence 99999999999999999987655 7889999999999999999 89999999999999985 667888999999999
Q ss_pred EEeecccC----CCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc
Q 001403 482 SLCPHAKE----NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557 (1084)
Q Consensus 482 ~~~~~~~~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~ 557 (1084)
++.+.+.. ++..+++++.|+.|++||+...+....+..|...|.+++|+|+|++|++++. ++.|++||+.++
T Consensus 153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iwd~~~~ 228 (319)
T 3frx_A 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWNLAAK 228 (319)
T ss_dssp EEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEEETTTT
T ss_pred EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEECCCC
Confidence 99997643 4568999999999999999998888888999999999999999999999986 778999999999
Q ss_pred eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCC------CCCCcceEEEecCCCEEEE
Q 001403 558 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG------GLPENPRICFNKNGTLLAV 631 (1084)
Q Consensus 558 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~~~~l~~ 631 (1084)
+.+..+..+ ..|.+++|+|++.++++++.+ .+++|++..+..+..+..+. ....+.+++|+|||++|++
T Consensus 229 ~~~~~~~~~----~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s 303 (319)
T 3frx_A 229 KAMYTLSAQ----DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 303 (319)
T ss_dssp EEEEEEECC----SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEE
T ss_pred cEEEEecCC----CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEE
Confidence 998888764 479999999999999888765 59999999888877765331 1235779999999999999
Q ss_pred EECCCeEEEEEcCCC
Q 001403 632 IANENRIKILETPES 646 (1084)
Q Consensus 632 ~~~dg~i~iwd~~~~ 646 (1084)
++.||.|++|++.++
T Consensus 304 g~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 304 GYTDNVIRVWQVMTA 318 (319)
T ss_dssp EETTSCEEEEEEEEC
T ss_pred eecCceEEEEEEeec
Confidence 999999999998653
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=364.58 Aligned_cols=286 Identities=18% Similarity=0.289 Sum_probs=267.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
+.+|..+|++++|+|++++|++|+.||+|+|||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 56799999999999999999999999999999999997665 7889999999999999999 899999999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 464 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
+.+++++.++.+|...|.+++|+| ++.+|++++.|++|++||+.++.....+..|...+.+++++|+++++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 999999999999999999999965 6689999999999999999999999999999999999999999999999986
Q ss_pred CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCC--------------------CCEEEEEECCCcEEEEECCCCe
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--------------------KDQILAAGDDHVIKIWDMNKVQ 603 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~dg~i~iwd~~~~~ 603 (1084)
++.|++||+.+++....+.+|. ..|.+++|+|+ +.++++|+.|+.|++||+.++.
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred --CCeEEEEECCCCceeeEecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 6679999999999999998888 89999999996 6789999999999999999999
Q ss_pred EEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEec
Q 001403 604 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 683 (1084)
Q Consensus 604 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~ 683 (1084)
++..+..|.. .|.+++|+|++++|++++.|+.|++||..+++.+..+.+|...|.+++|+
T Consensus 330 ~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~------------------ 389 (410)
T 1vyh_C 330 CLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH------------------ 389 (410)
T ss_dssp EEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC------------------
T ss_pred eEEEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc------------------
Confidence 9999987654 68999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCccceecccCccccccc
Q 001403 684 EDPKEDVKPEISVEAENKSEVEKP 707 (1084)
Q Consensus 684 ~~~s~~~~~l~~~~~d~~i~~w~~ 707 (1084)
|++.++++++.|++|++|+.
T Consensus 390 ----~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 390 ----KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ----SSSSCEEEEETTSEEEEEC-
T ss_pred ----CCCCEEEEEeCCCcEEEEeC
Confidence 67888999999999999985
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-39 Score=359.35 Aligned_cols=320 Identities=16% Similarity=0.200 Sum_probs=235.0
Q ss_pred cceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCC
Q 001403 693 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP 772 (1084)
Q Consensus 693 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 772 (1084)
++.++.+.....|++....+ ..|...|.+++|+|||++|++++.+. +++|| ..+
T Consensus 19 ~~~~~g~~~~~~w~~p~~~p----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd---------------~~v 72 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPVTAP----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWG---------------GSI 72 (357)
T ss_dssp -------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCC---------------EEE
T ss_pred EEecCCCccccccCCCCCCc----------ccccCCEEEEEECCCCCEEEEEcCCC-Ccccc---------------CeE
Confidence 34445556778888753222 24888999999999999999998863 35554 234
Q ss_pred eeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEE----EEcCCCCCeEEEEEcCCCC
Q 001403 773 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL----TIMPPSPTATSLAFNPHDN 848 (1084)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~----~~~~~~~~i~~l~~s~~d~ 848 (1084)
++|+..++...........+|...|.+++|+|++++++++.+|+|++||+.+++... ...+|...|++++|+| ++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg 151 (357)
T 4g56_B 73 WVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DG 151 (357)
T ss_dssp EEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SS
T ss_pred EEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CC
Confidence 556666555433333333358889999999999988877779999999999876543 3457899999999999 89
Q ss_pred cEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccC
Q 001403 849 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 927 (1084)
Q Consensus 849 ~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 927 (1084)
++|++|+.||.|++||+.+++.+..+.+|...|++++|+|++. ++++++.||+|++||+.+++..... ....+.
T Consensus 152 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~---~~~~~~-- 226 (357)
T 4g56_B 152 TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI---DFCASD-- 226 (357)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC---CCTTCC--
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee---eecccc--
Confidence 9999999999999999999999999999999999999999875 7899999999999999986633211 111222
Q ss_pred CCCceEEEEccCC-CEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCce
Q 001403 928 APSETHIQFHKDQ-TRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEV 1004 (1084)
Q Consensus 928 ~~~v~~~~~s~dg-~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~t~~~dg~i~vwd~~~~~~ 1004 (1084)
..+.+++|+|++ .+||++ .|+.|++||+.+++++.. +.+|...|++++|+|++ ++|++++.||+|+|||+.++++
T Consensus 227 -~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 227 -TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV 304 (357)
T ss_dssp -SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred -ccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 268999999985 677774 789999999999998877 55799999999999987 6799999999999999999987
Q ss_pred eEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCC
Q 001403 1005 QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1057 (1084)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~ 1057 (1084)
+..+. |.+.|+ +++|+|.|+.+|++++.||+|++|++...+.
T Consensus 305 ~~~~~---------H~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 305 FRDLS---------HRDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEECC---------CSSCEE--EEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred eEECC---------CCCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 75432 455565 6889997789999999999999999976653
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-38 Score=348.46 Aligned_cols=287 Identities=14% Similarity=0.181 Sum_probs=263.4
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
.+.+|...|.+++|+|||++|++|+.||+|+|||+.+++.+. .+..|...|.+++|+|+++ ++++|+.|+.|++|
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw 124 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEE
Confidence 378899999999999999999999999999999999987554 6778999999999999999 89999999999999
Q ss_pred ECCCC----ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEE
Q 001403 463 DAVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 538 (1084)
Q Consensus 463 d~~~g----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 538 (1084)
|+.++ .....+.+|.+.|.++.|.+ ++ .+++++.||+|++||+.++.....+..|...|.+++|+|+++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLD--DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECC--CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 99876 35567889999999999965 33 5999999999999999999888899999999999999999999999
Q ss_pred EeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcc
Q 001403 539 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 618 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 618 (1084)
++. ++.|++||+.++..+..+.+|. ..|.+++|+|++++|++++.||+|++||+.+++.+..+........|.
T Consensus 202 g~~----d~~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~ 274 (340)
T 1got_B 202 GAC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274 (340)
T ss_dssp EET----TSCEEEEETTTCSEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred EeC----CCcEEEEECCCCeeEEEEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceE
Confidence 986 6679999999999999999888 899999999999999999999999999999999888887555445689
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecc
Q 001403 619 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 698 (1084)
Q Consensus 619 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 698 (1084)
+++|+|+|+++++++.|+.|++||..+++.+..+.+|...|.+++|+ |++.++++++.
T Consensus 275 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l~s~s~ 332 (340)
T 1got_B 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSW 332 (340)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----------------------TTSSCEEEEET
T ss_pred EEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc----------------------CCCCEEEEEcC
Confidence 99999999999999999999999999999999999999999999997 67889999999
Q ss_pred cCcccccc
Q 001403 699 ENKSEVEK 706 (1084)
Q Consensus 699 d~~i~~w~ 706 (1084)
|++|++|+
T Consensus 333 D~~i~iWd 340 (340)
T 1got_B 333 DSFLKIWN 340 (340)
T ss_dssp TSCEEEEC
T ss_pred CccEEecC
Confidence 99999996
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-39 Score=361.86 Aligned_cols=306 Identities=17% Similarity=0.242 Sum_probs=264.2
Q ss_pred cceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
..+.++|.+|.+.|.+++|+|||++||+|+.| ++|+|||+.++..... +.+|...|.+++|+|+|++|
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D---------~~v~iWd~~~~~~~~~---~~~h~~~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQD---------GRLIVWNALTSQKTHA---IKLHCPWVMECAFAPNGQSV 123 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETT---------SEEEEEETTTTEEEEE---EECCCTTCCCCEECTTSSEE
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCccceE---EecCCCCEEEEEECCCCCEE
Confidence 34668899999999999999999999999999 9999999988765433 67899999999999999999
Q ss_pred EEEeCCCEEEEEEccCCcc----ccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe-----c
Q 001403 404 GVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-----E 474 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~----~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~-----~ 474 (1084)
|+|+.|+.|++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++.+..+ .
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~ 202 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRISIFGSEFPS 202 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEEEECCCSSS
T ss_pred EEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEEEeecccCC
Confidence 9999999999999976421 1223357799999999999998654 6999999999999999999998877 6
Q ss_pred cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCC-CCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEec
Q 001403 475 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 553 (1084)
Q Consensus 475 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd 553 (1084)
+|...|.++++++. ++.++++|+.||+|++||++. ......+..|...|.+++|+|++++|++++. ++.|++||
T Consensus 203 ~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~i~lwd 277 (380)
T 3iz6_a 203 GHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD----DGTCRLFD 277 (380)
T ss_dssp SCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----SSCEEEEE
T ss_pred CCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----CCeEEEEE
Confidence 79999999999643 567999999999999999984 4667788889999999999999999999986 66799999
Q ss_pred CCCceEeeeeeccccc----cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcC--CCCCCCcceEEEecCCC
Q 001403 554 ESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA--GGGLPENPRICFNKNGT 627 (1084)
Q Consensus 554 ~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~v~~s~~~~ 627 (1084)
+.+++.+..+..+... ...+.+++|+|+++++++|+.||.|++||..+++.+..+.. .++...|.+++|+|+|+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 357 (380)
T 3iz6_a 278 MRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGS 357 (380)
T ss_dssp TTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSS
T ss_pred CCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCC
Confidence 9999998887665311 12488999999999999999999999999999998887732 23445799999999999
Q ss_pred EEEEEECCCeEEEEEcCCCC
Q 001403 628 LLAVIANENRIKILETPESN 647 (1084)
Q Consensus 628 ~l~~~~~dg~i~iwd~~~~~ 647 (1084)
+|++|+.|+.|++|++...+
T Consensus 358 ~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 358 ALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEEEECTTSCEEEEECCSSS
T ss_pred EEEEeeCCCCEEEEecCCCc
Confidence 99999999999999988653
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=346.83 Aligned_cols=289 Identities=16% Similarity=0.243 Sum_probs=264.0
Q ss_pred ecCCCCCeEEEEEcCC----CCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcE
Q 001403 384 VRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 459 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspd----g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i 459 (1084)
+.+|.+.|.+++|+|+ +++|++|+.|++|+|||+.+++. .....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 5679999999999985 67999999999999999987653 22336789999999999999999 89999999999
Q ss_pred EEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEE
Q 001403 460 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 539 (1084)
Q Consensus 460 ~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 539 (1084)
++||+.+++.+..+..|...+.+++|+| ++++|++++.||.|++|++++......+..+...+.+++|+|+|++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 9999999999999999999999999954 77899999999999999999999988888888999999999999999999
Q ss_pred eeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcce
Q 001403 540 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 619 (1084)
Q Consensus 540 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 619 (1084)
+. ++.|++||+.+++.+..+.+|. ..|.+++|+|++++|++++.||.|++||+.+++....+..+.. .|.+
T Consensus 183 ~~----dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~ 253 (321)
T 3ow8_A 183 AI----DGIINIFDIATGKLLHTLEGHA---MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS--WVLN 253 (321)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCS---SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS--CEEE
T ss_pred cC----CCeEEEEECCCCcEEEEEcccC---CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC--ceEE
Confidence 86 6679999999999999999888 8999999999999999999999999999999999998886644 6999
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceeccc
Q 001403 620 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 699 (1084)
Q Consensus 620 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 699 (1084)
++|+|++++|++++.|+.|++||+.+++++..+.+|...|.+++|+ ++++.+++++.|
T Consensus 254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s----------------------~~g~~l~s~~~d 311 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN----------------------GNGSKIVSVGDD 311 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETT
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEEC----------------------CCCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999997 678889999999
Q ss_pred Cccccccce
Q 001403 700 NKSEVEKPL 708 (1084)
Q Consensus 700 ~~i~~w~~~ 708 (1084)
++|++||..
T Consensus 312 ~~i~vwd~p 320 (321)
T 3ow8_A 312 QEIHIYDCP 320 (321)
T ss_dssp CCEEEEECC
T ss_pred CeEEEEeCC
Confidence 999999963
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-38 Score=350.02 Aligned_cols=306 Identities=16% Similarity=0.251 Sum_probs=251.1
Q ss_pred ceeeecccCCC-CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 325 TVAQTLIEGSS-SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 325 ~~~~~l~~h~~-~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
.++++|.+|.+ .|++++|||||++||+++.| ++|+|||+.+...........+|...|.+++|+|+|++|
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D---------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l 76 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGD---------RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYL 76 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETT---------SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEE
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCC---------CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEE
Confidence 46788999988 99999999999999999988 999999998765444444457899999999999999999
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc---eeeEeccCCCcE
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFEGHGAPV 480 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~---~~~~~~~h~~~v 480 (1084)
|+|+.|++|+|||+.++.. .....+.+|...|.+++|+|+++ +|++|+.|++|++||+.++. ++..+.+|...|
T Consensus 77 ~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v 153 (345)
T 3fm0_A 77 ASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV 153 (345)
T ss_dssp EEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCE
T ss_pred EEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCe
Confidence 9999999999999987642 22347889999999999999999 89999999999999998764 456788999999
Q ss_pred EEEeecccCCCcEEEEEecCCeEEEEECCCCCc--eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc-
Q 001403 481 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG- 557 (1084)
Q Consensus 481 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~- 557 (1084)
.+++|+| ++.+|++++.|+.|++||...... ...+..|...|.+++|+|+|++|++++. ++.|++||....
T Consensus 154 ~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~iW~~~~~~ 227 (345)
T 3fm0_A 154 KHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVRIWRQYLPG 227 (345)
T ss_dssp EEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEEEECTT
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEEEeccccCC
Confidence 9999965 668999999999999999987653 4577888999999999999999999986 667999986321
Q ss_pred --------------eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeE-------EEEEcCCCCCCC
Q 001403 558 --------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL-------LTTIDAGGGLPE 616 (1084)
Q Consensus 558 --------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~ 616 (1084)
+++..+.+. |...|.+++|+|++..+++++.|+.|++|+...+.. .......++...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~ 305 (345)
T 3fm0_A 228 NEQGVACSGSDPSWKCICTLSGF--HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD 305 (345)
T ss_dssp CTTCCCCC---CEEEEEEEECSS--CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSC
T ss_pred CCccceeeccCCccceeEEecCC--CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCc
Confidence 233344441 237899999999999999999999999999875421 111111234457
Q ss_pred cceEEEecCC-CEEEEEECCCeEEEEEcCCCCeee
Q 001403 617 NPRICFNKNG-TLLAVIANENRIKILETPESNSVD 650 (1084)
Q Consensus 617 v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 650 (1084)
|.+++|+|++ .+|++++.||.|++|+..+++...
T Consensus 306 V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 306 VNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp EEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred EeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 9999999987 599999999999999999876543
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=345.64 Aligned_cols=296 Identities=13% Similarity=0.161 Sum_probs=228.0
Q ss_pred ccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC
Q 001403 725 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 804 (1084)
Q Consensus 725 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 804 (1084)
+...|.+++|+|||+.|++++ |+++++|+.. +.+|+................+...|.+++|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGS---------------LWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEE---------------EEEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeece---------------eeeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 566799999999999777665 7788888732 122221111100000011112567899999999
Q ss_pred CCCEEEEEeCCeEEEEEcCCceeEEE----EcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccC
Q 001403 805 NDAYLFSASGGVISLYIVMTFKTILT----IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR 880 (1084)
Q Consensus 805 dg~~l~~~sdg~i~vwd~~~~~~~~~----~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~ 880 (1084)
++.+++.+.||+|++||+.+++.... +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+.
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~ 171 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ 171 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence 97655444489999999998876543 458999999999999 8999999999999999999999999999999999
Q ss_pred EEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccC-CCEEEEE-eCCeEEEEEcC
Q 001403 881 VTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLLV-HETHLAIYEAE 957 (1084)
Q Consensus 881 V~~l~~spd~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~la~~-~d~~i~vwd~~ 957 (1084)
|++++|+|++. +|++++.|++|++||+.+++.... +.. ..+. ..+.+++|+|+ +++|+++ .|++|++||+.
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~-~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IGC-SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeee--eec-ceee---ccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 99999999984 789999999999999998764331 111 1111 25889999995 5677774 78999999999
Q ss_pred CcceeeEeecCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCC
Q 001403 958 ELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1036 (1084)
Q Consensus 958 ~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~ 1036 (1084)
+++++.. +.+|...|++++|+||| ++|++++.||+|+|||+.++++.. +. .|.+.|+ +++|+|++..
T Consensus 246 ~~~~~~~-~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--------~H~~~V~--~v~~sp~~~~ 313 (344)
T 4gqb_B 246 STSCVLS-SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--------AHRDFVR--DATWSPLNHS 313 (344)
T ss_dssp C--CCEE-EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--------CCSSCEE--EEEECSSSTT
T ss_pred CCcEEEE-EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--------CCCCCEE--EEEEeCCCCe
Confidence 9999887 55899999999999998 579999999999999999998653 22 1455565 6889996455
Q ss_pred EEEEEeCCCcEEEEcCCCC
Q 001403 1037 QFAVGLTNGEVYVIEPNEP 1055 (1084)
Q Consensus 1037 ~l~~~~~dg~v~vw~~~~~ 1055 (1084)
+|++++.||+|++|++...
T Consensus 314 llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEEEETTSCEEEEECCC-
T ss_pred EEEEEcCCCeEEEEECCCC
Confidence 7889999999999999654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-38 Score=349.52 Aligned_cols=299 Identities=11% Similarity=0.112 Sum_probs=241.7
Q ss_pred ccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccccee-eeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 001403 331 IEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKT-ALVRDPGVSVNRVVWSPDGSLLGVAYSK 409 (1084)
Q Consensus 331 ~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~-~~~~~h~~~V~~v~fspdg~~las~~~d 409 (1084)
..|...|.+++|||||++||+++.| ...+.++.+++|+..++...... ....+|...|.+++|+|++++ ++++.|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d---~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~d 114 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSL---SSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDS 114 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECS---SSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETT
T ss_pred ccccCCEEEEEECCCCCEEEEEcCC---CCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECC
Confidence 5799999999999999999998755 12333599999999775443221 124568899999999999865 467789
Q ss_pred CEEEEEEccCCccccce-eeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeccc
Q 001403 410 HIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 488 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~ 488 (1084)
|+|+|||+.+++..... ....+|.+.|++++|+|+++ +|++|+.|++|++||+++++.+..+.+|...|.+++|++.
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~ 192 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG 192 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence 99999999988754322 24558999999999999999 8999999999999999999999999999999999999765
Q ss_pred CCCcEEEEEecCCeEEEEECCCCCceEee--cCCCCeEEEEEEcCCC-CEEEEEeeCCCCCeeEEEecCCCceEeeeeec
Q 001403 489 ENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 565 (1084)
Q Consensus 489 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 565 (1084)
.+ .++++++.||.|++||+++.+....+ ..+...+.+++|+|++ .++++++. ++.|++||+.+++.+..+.+
T Consensus 193 ~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~wd~~~~~~~~~~~~ 267 (357)
T 4g56_B 193 KD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLVNIKNPDSAQTSAV 267 (357)
T ss_dssp CS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEEESSCGGGCEEECC
T ss_pred CC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEEECCCCcEeEEEec
Confidence 33 47899999999999999987766544 3455679999999985 56777765 66799999999999999998
Q ss_pred cccccCceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec-CCCEEEEEECCCeEEEEEc
Q 001403 566 LQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILET 643 (1084)
Q Consensus 566 ~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~ 643 (1084)
|. ..|.+++|+|++ ++|++|+.|++|+|||+.+++.+..+. +...|.+++|+| ++.+|++++.||.|++|++
T Consensus 268 ~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~---H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 268 HS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS---HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp CS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC---CSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred cc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECC---CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 88 899999999987 578899999999999999998887653 344699999998 8999999999999999999
Q ss_pred CCC
Q 001403 644 PES 646 (1084)
Q Consensus 644 ~~~ 646 (1084)
.+.
T Consensus 342 ~~~ 344 (357)
T 4g56_B 342 PSE 344 (357)
T ss_dssp C--
T ss_pred CCC
Confidence 764
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=344.61 Aligned_cols=299 Identities=14% Similarity=0.119 Sum_probs=237.3
Q ss_pred ccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccc-ceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 001403 331 IEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSML-FKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 409 (1084)
Q Consensus 331 ~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~-~~~~~~~~h~~~V~~v~fspdg~~las~~~d 409 (1084)
..|...|.+++|||||++|++++ | .++ .+.++.+.+|+....... ........|...|.+++|+||+ .|++|+.|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d-~~~-r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~d 102 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-S-LSG-RCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDS 102 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-C-CSS-SCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETT
T ss_pred ccccCCEEEEEECCCCCEEEEEe-C-Cce-EEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECC
Confidence 35666899999999999999876 3 010 111244444443221111 0111122366789999999985 68899999
Q ss_pred CEEEEEEccCCccccce-eeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeccc
Q 001403 410 HIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 488 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~ 488 (1084)
|+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++||+++++++.++.+|...|.+++|++.
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~ 180 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPH 180 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSS
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCC
Confidence 99999999998765432 24568999999999999999 8999999999999999999999999999999999999764
Q ss_pred CCCcEEEEEecCCeEEEEECCCCCceEeec--CCCCeEEEEEEcCC-CCEEEEEeeCCCCCeeEEEecCCCceEeeeeec
Q 001403 489 ENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 565 (1084)
Q Consensus 489 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~d-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 565 (1084)
+ ..++++++.||+|++||+++.+....+. .+...+.+++|+|+ ++++++++. ++.|++||+++++++..+.+
T Consensus 181 ~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~~~~~~~~ 255 (344)
T 4gqb_B 181 K-DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTSCVLSSAV 255 (344)
T ss_dssp C-TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--CCEEEEC
T ss_pred C-CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCcEEEEEcC
Confidence 3 2588999999999999999988777654 34557899999995 567777765 67799999999999999999
Q ss_pred cccccCceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC-EEEEEECCCeEEEEEc
Q 001403 566 LQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILET 643 (1084)
Q Consensus 566 ~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~ 643 (1084)
|. ..|.+++|+|++ ++|++|+.|++|+|||+.++++.. +..| ...|.+++|+|+++ +|++++.|++|++|++
T Consensus 256 h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H--~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 256 HS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH--RDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp CS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC--SSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred CC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC--CCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 88 899999999998 578999999999999999988654 4444 44699999999886 6778999999999999
Q ss_pred CCC
Q 001403 644 PES 646 (1084)
Q Consensus 644 ~~~ 646 (1084)
.+.
T Consensus 330 ~~~ 332 (344)
T 4gqb_B 330 PTE 332 (344)
T ss_dssp CC-
T ss_pred CCC
Confidence 865
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=334.06 Aligned_cols=295 Identities=19% Similarity=0.309 Sum_probs=259.7
Q ss_pred ceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEE
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 404 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la 404 (1084)
....++.+|.+.|.+++|+|||++||++..| +.|+||++.++.... .+.+|...|.+++|+|++++|+
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~d---------g~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~ 81 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSAD---------KLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSNLLV 81 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSSEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCC---------CeEEEEeCCCcccch---hhccCCCceEEEEEcCCCCEEE
Confidence 4567789999999999999999999999888 999999998765432 3678999999999999999999
Q ss_pred EEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEe
Q 001403 405 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 484 (1084)
Q Consensus 405 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~ 484 (1084)
+++.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|++|++||+++++.+..+..|..+|.+++
T Consensus 82 s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 156 (312)
T 4ery_A 82 SASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 156 (312)
T ss_dssp EEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred EECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEE
Confidence 99999999999999987655 6789999999999999999 899999999999999999999999999999999999
Q ss_pred ecccCCCcEEEEEecCCeEEEEECCCCCceEeec-CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeee
Q 001403 485 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 563 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 563 (1084)
|++ ++.++++++.||.|++||+.+.+....+. .+...+..++|+|+++++++++. ++.|++||+.+++.+..+
T Consensus 157 ~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~ 230 (312)
T 4ery_A 157 FNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLKTY 230 (312)
T ss_dssp ECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETTTTEEEEEE
T ss_pred EcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECCCCcEEEEE
Confidence 955 67899999999999999999887766554 44567999999999999999886 667999999999999999
Q ss_pred eccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEE--CCCeEEEE
Q 001403 564 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA--NENRIKIL 641 (1084)
Q Consensus 564 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--~dg~i~iw 641 (1084)
.+|......+......+++.++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+++++++++ .|+.|++|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~~~d~~i~~W 308 (312)
T 4ery_A 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAALENDKTIKLW 308 (312)
T ss_dssp CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEECTTTCCEEEE
T ss_pred EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEccCCccEEEe
Confidence 88773223333444457788999999999999999999999999987654 689999999999999997 69999999
Q ss_pred EcC
Q 001403 642 ETP 644 (1084)
Q Consensus 642 d~~ 644 (1084)
+..
T Consensus 309 ~~d 311 (312)
T 4ery_A 309 KSD 311 (312)
T ss_dssp ECC
T ss_pred cCC
Confidence 864
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-37 Score=341.07 Aligned_cols=287 Identities=15% Similarity=0.172 Sum_probs=261.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
+.+|...|.+++|+||+++||+|+.|++|+|||..+++... .+..|...|.+++|+|+|. ++++|+.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 77899999999999999999999999999999999886544 6678899999999999999 899999999999999
Q ss_pred CCCC------ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcC--CCCE
Q 001403 464 AVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRR 535 (1084)
Q Consensus 464 ~~~g------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~--d~~~ 535 (1084)
+..+ .....+.+|...|.+++|++ ++..|++++.||+|++||+++++....+..|...+.+++|+| ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8654 34567788999999999965 567999999999999999999999999999999999999987 5789
Q ss_pred EEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCC
Q 001403 536 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 615 (1084)
Q Consensus 536 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 615 (1084)
+++++. ++.|++||+++++.+..+.+|. ..|.+++|+|++..|++++.|++|++||+.+++.+..+..+....
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccc
Confidence 999986 6679999999999999999888 899999999999999999999999999999998888877655445
Q ss_pred CcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccce
Q 001403 616 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 695 (1084)
Q Consensus 616 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 695 (1084)
.+.+++|+|+++++++++.|+.|++||+.++..+..+.+|...|.+++|+ |+++++++
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s----------------------pdg~~l~s 343 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS----------------------PDGTAFCS 343 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC----------------------TTSSCEEE
T ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC----------------------CCCCEEEE
Confidence 67899999999999999999999999999999999999999999999997 67889999
Q ss_pred ecccCcccccc
Q 001403 696 VEAENKSEVEK 706 (1084)
Q Consensus 696 ~~~d~~i~~w~ 706 (1084)
++.|+++++|+
T Consensus 344 gs~D~~v~vW~ 354 (354)
T 2pbi_B 344 GSWDHTLRVWA 354 (354)
T ss_dssp EETTSEEEEEC
T ss_pred EcCCCCEEecC
Confidence 99999999995
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-37 Score=353.60 Aligned_cols=344 Identities=15% Similarity=0.208 Sum_probs=270.2
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEc----cCCccc---cceeeeec-----
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAY----HGGSDA---RQQLEIDA----- 431 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~-~las~~~dg~v~iwd~----~~~~~~---~~~~~l~~----- 431 (1084)
..+.+|+++.....+.. ..|...|.+++|+|+|+ +||+++.|+.|++||+ .+++.+ .....+..
T Consensus 25 ~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKE---IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALS 101 (425)
T ss_dssp ---------CCCEECEE---EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC
T ss_pred cccccccchhhhhheee---eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccc
Confidence 44567777665544432 33678999999999999 9999999999999999 887620 01112222
Q ss_pred -----ccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEE
Q 001403 432 -----HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506 (1084)
Q Consensus 432 -----h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iw 506 (1084)
|.+.|++++|+|+++ +|++++.|+.|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.||.|++|
T Consensus 102 ~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 102 ASSGKTTNQVTCLAWSHDGN--SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILW 176 (425)
T ss_dssp ------CBCEEEEEECTTSS--EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEE
T ss_pred ccccCCCCceEEEEEcCCCC--EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEE
Confidence 688999999999999 899999999999999 78889999999999999999955 67899999999999999
Q ss_pred ECCCCCceEeecCCCCe---------------EEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccC
Q 001403 507 LYDSLGARVDYDAPGLG---------------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN 571 (1084)
Q Consensus 507 d~~~~~~~~~~~~~~~~---------------i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~ 571 (1084)
|+.+.+....+..+... +.+++|++++. +++++. ++.|++||+.+++.+..+..|. .
T Consensus 177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~g~i~~~d~~~~~~~~~~~~~~---~ 248 (425)
T 1r5m_A 177 NVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGP----KGAIFVYQITEKTPTGKLIGHH---G 248 (425)
T ss_dssp ETTTTEEEEEECCC---------------CCCBSCCEEEETTE-EEEECG----GGCEEEEETTCSSCSEEECCCS---S
T ss_pred ECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcC----CCeEEEEEcCCCceeeeeccCC---C
Confidence 99988887777776665 88999999865 555554 6679999999988888887776 7
Q ss_pred ceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeee
Q 001403 572 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA 651 (1084)
Q Consensus 572 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 651 (1084)
.|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------------------------------------------ 286 (425)
T 1r5m_A 249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY------------------------------------------ 286 (425)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEEC------------------------------------------
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEec------------------------------------------
Confidence 78888888888888888888888888776541111110
Q ss_pred ccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEE
Q 001403 652 AGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR 731 (1084)
Q Consensus 652 ~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~ 731 (1084)
T Consensus 287 -------------------------------------------------------------------------------- 286 (425)
T 1r5m_A 287 -------------------------------------------------------------------------------- 286 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEE
Q 001403 732 LTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 811 (1084)
Q Consensus 732 l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~ 811 (1084)
.|...+.+++|+|++ ++++
T Consensus 287 ------------------------------------------------------------~~~~~i~~~~~~~~~-~l~~ 305 (425)
T 1r5m_A 287 ------------------------------------------------------------GHSQSIVSASWVGDD-KVIS 305 (425)
T ss_dssp ------------------------------------------------------------CCSSCEEEEEEETTT-EEEE
T ss_pred ------------------------------------------------------------CCCccEEEEEECCCC-EEEE
Confidence 134456667777777 5666
Q ss_pred Ee-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce--------------------e
Q 001403 812 AS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--------------------V 870 (1084)
Q Consensus 812 ~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~--------------------~ 870 (1084)
++ ++.|++||+.+++.+..+..|...|.+++|+| ++++|++++.||.|++||+.+++ .
T Consensus 306 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (425)
T 1r5m_A 306 CSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPL 384 (425)
T ss_dssp EETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCE
T ss_pred EeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchh
Confidence 55 67888888888888888888999999999999 89999999999999999999988 8
Q ss_pred eeeeccccc--CEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001403 871 ISKLEGHSK--RVTGLVFSDALNILVSSGGDAQIFVWDVD 908 (1084)
Q Consensus 871 ~~~l~~h~~--~V~~l~~spd~~~l~s~s~dg~I~iwd~~ 908 (1084)
+..+.+|.. .|++++|+|++++|++++.||.|++||++
T Consensus 385 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 385 YASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred hhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 899999976 99999999999999999999999999986
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=332.10 Aligned_cols=270 Identities=19% Similarity=0.249 Sum_probs=242.8
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
.+.+|.+.|.+++|+|||++||+++.||+|++||+.++..++ .+..|..+|.+++|+|+++ +|++|+.|++|++|
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEE
Confidence 377899999999999999999999999999999999987655 6788999999999999999 89999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc-eEeecCCCCeEEEEEEcC-CCCEEEEEe
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSA-NGRRLFSCG 540 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~-d~~~l~~~~ 540 (1084)
|+.+++.+..+.+|...|.+++|+| ++.+|++++.||+|++||+++... ...+..|...|.+++|+| ++..+++++
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 9999999999999999999999965 668999999999999999987744 456788999999999999 678999998
Q ss_pred eCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcC--CCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcc
Q 001403 541 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 618 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 618 (1084)
. ++.|++||+.++.....+..+. ...+..+.|+| ++.++++++.|++|++||+.+++++..+..|.. .|.
T Consensus 161 ~----D~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~ 232 (304)
T 2ynn_A 161 L----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVS 232 (304)
T ss_dssp T----TSEEEEEETTCSSCSEEEECCC--TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEE
T ss_pred C----CCeEEEEECCCCCccceeccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEE
Confidence 6 7779999998877666655433 36788899986 678999999999999999999999999987654 689
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCC
Q 001403 619 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 667 (1084)
Q Consensus 619 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~ 667 (1084)
+++|+|++.+|++++.||.|++||..+++....+..+...+.+++++|.
T Consensus 233 ~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (304)
T 2ynn_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281 (304)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTT
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCC
Confidence 9999999999999999999999999999999999999999999998854
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-37 Score=352.29 Aligned_cols=327 Identities=13% Similarity=0.155 Sum_probs=281.7
Q ss_pred cCCCCceEEEEcCCCc-eeeeecccccCccccccceEEEEEc----CCccc------ccee-eeec------CCCCCeEE
Q 001403 332 EGSSSPMSMDFHPVQH-TLLLGLWDVNSGQKLFIRNFKVWDI----GACSM------LFKT-ALVR------DPGVSVNR 393 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~-~las~~~d~~sg~~~~~~~v~iwd~----~~~~~------~~~~-~~~~------~h~~~V~~ 393 (1084)
.|.+.|.+++|+|||+ +||++..| +.|+|||+ .++.. .... ..+. +|...|.+
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKN---------SVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTC 113 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETB---------TEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEE
T ss_pred eccCceEEEEECCCCCcEEEEecCC---------ceEEEEEEecccCCccccccccccccccccccccccccCCCCceEE
Confidence 4568999999999999 99999888 99999999 76652 2111 1122 26889999
Q ss_pred EEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe
Q 001403 394 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 473 (1084)
Q Consensus 394 v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~ 473 (1084)
++|+|+|++|++++.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+
T Consensus 114 ~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~ 187 (425)
T 1r5m_A 114 LAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHF 187 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEe
Confidence 99999999999999999999999 4444333 6779999999999999999 8999999999999999999999999
Q ss_pred ccCCCc---------------EEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEE
Q 001403 474 EGHGAP---------------VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 538 (1084)
Q Consensus 474 ~~h~~~---------------v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 538 (1084)
..+... +.+++|++. ..+++++.+|.|++||+........+..+...+.+++|+|+++++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 188 ELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp CCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred eccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE
Confidence 888777 888888653 46999999999999999999888888889999999999999999999
Q ss_pred EeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcc
Q 001403 539 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 618 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 618 (1084)
++. ++.|++||+.+++.+..+..|. ..+.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .+.
T Consensus 265 ~~~----d~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~ 334 (425)
T 1r5m_A 265 ASD----DGTLRIWHGGNGNSQNCFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV--PIF 334 (425)
T ss_dssp EET----TSCEEEECSSSBSCSEEECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--CEE
T ss_pred EcC----CCEEEEEECCCCccceEecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--cEE
Confidence 985 6679999999999999988877 899999999999 999999999999999999999998886544 689
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCCC--------------------eeeecccccc--ceeEEEEcCCCceeeeecc
Q 001403 619 RICFNKNGTLLAVIANENRIKILETPESN--------------------SVDAAGVLSD--NLRKLSVNPISTVTGAGIA 676 (1084)
Q Consensus 619 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~--~i~~~~~~p~~~~~~~~~~ 676 (1084)
+++|+|++++|++++.||.|++|++.++. .+..+..|.. .|.+++|+
T Consensus 335 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----------- 403 (425)
T 1r5m_A 335 AGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN----------- 403 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC-----------
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc-----------
Confidence 99999999999999999999999999877 7788888866 88888887
Q ss_pred CceeEecCCCCCCCCccceecccCccccccce
Q 001403 677 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 677 ~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
|+++++++++.||.+++|++.
T Consensus 404 -----------~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 404 -----------CAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -----------TTSSEEEEEESSSCCEEEECC
T ss_pred -----------CCCceEEEEecCceEEEEeec
Confidence 678889999999999999974
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-36 Score=329.33 Aligned_cols=297 Identities=21% Similarity=0.272 Sum_probs=253.0
Q ss_pred eecCCCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEccCCcc--ccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcE
Q 001403 383 LVRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGSD--ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 459 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg-~~las~~~dg~v~iwd~~~~~~--~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i 459 (1084)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++||+.+... -.....+.+|...|.+++|+|+++ ++++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 478999999999999965 8999999999999999975432 123447889999999999999999 89999999999
Q ss_pred EEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCC------C
Q 001403 460 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN------G 533 (1084)
Q Consensus 460 ~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d------~ 533 (1084)
++||+.+++.+..+.+|...|.+++|++ ++.+|++++.||+|++||++ ......+..+...+.+++++|. +
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999999999999999999999999955 66899999999999999996 4566677888899999999985 4
Q ss_pred CEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCC
Q 001403 534 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 613 (1084)
Q Consensus 534 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 613 (1084)
..+++++. ++.|++||+.+++....+.+|. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..+.
T Consensus 167 ~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~---~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~- 238 (319)
T 3frx_A 167 VTIISAGN----DKMVKAWNLNQFQIEADFIGHN---SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD- 238 (319)
T ss_dssp CEEEEEET----TSCEEEEETTTTEEEEEECCCC---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS-
T ss_pred cEEEEEeC----CCEEEEEECCcchhheeecCCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-
Confidence 47888876 6679999999999999999888 899999999999999999999999999999999999887543
Q ss_pred CCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCcc
Q 001403 614 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 693 (1084)
Q Consensus 614 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l 693 (1084)
.+.+++|+|++.++++++.+ .+++|++.....+..+..+...
T Consensus 239 --~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~----------------------------------- 280 (319)
T 3frx_A 239 --EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG----------------------------------- 280 (319)
T ss_dssp --CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT-----------------------------------
T ss_pred --cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc-----------------------------------
Confidence 48999999999999988764 6999998865444333211000
Q ss_pred ceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccC
Q 001403 694 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 757 (1084)
Q Consensus 694 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~ 757 (1084)
....+...+.+++|+|||++|++++.||.|++|++..
T Consensus 281 ---------------------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 281 ---------------------------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp ---------------------------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred ---------------------------cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 0012456788999999999999999999999998753
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=335.25 Aligned_cols=297 Identities=17% Similarity=0.186 Sum_probs=235.3
Q ss_pred ceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecC-CCCCeEEEEEcCCCCEE
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~-h~~~V~~v~fspdg~~l 403 (1084)
+++++|.+|.+.|++++|+|+ +||+++.| ++|+|||+.+........+..+ |...|.+++|+|++++|
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D---------~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l 73 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTD---------RKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLL 73 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESS---------SCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEE
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCC---------CEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEE
Confidence 457789999999999999998 99999888 9999999987543222222134 99999999999999999
Q ss_pred EEEeCCCEEEEEEccCCc----cccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC----CceeeEecc
Q 001403 404 GVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----GSRTYSFEG 475 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~----~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~----g~~~~~~~~ 475 (1084)
|+|+.|++|+|||+..+. .......+.+|...|.+++|+|+++ +|++|+.|++|++||+.. .+++..+.+
T Consensus 74 as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~~~~~~~~ 151 (330)
T 2hes_X 74 AAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYECISVLQE 151 (330)
T ss_dssp EEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCEEEEEECC
T ss_pred EEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeEEEEEecc
Confidence 999999999999996432 1223446789999999999999999 899999999999999943 256778899
Q ss_pred CCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC--CceEeecCCCCeEEEEEEcCC--CCEEEEEeeCCCCCeeEEE
Q 001403 476 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVE 551 (1084)
Q Consensus 476 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~d--~~~l~~~~~~~~~~~~i~~ 551 (1084)
|...|.+++|+| ++.+|++++.|++|++||.... .....+..|...|.+++|+|+ +.+|++++. ++.|++
T Consensus 152 h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----D~~v~i 225 (330)
T 2hes_X 152 HSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD----DSTVRV 225 (330)
T ss_dssp CSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET----TSCEEE
T ss_pred CCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC----CCeEEE
Confidence 999999999965 6689999999999999998765 456678889999999999999 778998886 667999
Q ss_pred ecCCCc--------eEeeeeec-cccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeE--EEEEcCCCCCC-Ccce
Q 001403 552 WNESEG--------AIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLP-ENPR 619 (1084)
Q Consensus 552 wd~~~~--------~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~-~v~~ 619 (1084)
||+.++ .....+.+ |. ..|.+++|++++ .|++++.||.|++||..+++. ..... ..+.. .|.+
T Consensus 226 w~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~h~~~~v~~ 300 (330)
T 2hes_X 226 WKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA-LCHGVYEINV 300 (330)
T ss_dssp EEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES-CTTTTSCEEE
T ss_pred EEecCCCccccceeEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc-cccccceEEE
Confidence 998765 33444444 44 889999999765 899999999999999988743 32321 22233 5899
Q ss_pred EEEec--CCCEEEEEECCCeEEEEEcCC
Q 001403 620 ICFNK--NGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 620 v~~s~--~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
++|+| ++++|++++.||.|++|++..
T Consensus 301 v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 301 VKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999 789999999999999999864
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=334.95 Aligned_cols=324 Identities=13% Similarity=0.166 Sum_probs=271.9
Q ss_pred CCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEE
Q 001403 333 GSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 412 (1084)
Q Consensus 333 h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v 412 (1084)
|.+.|.+++|||||+++|++..+ +.+.+|.......... ..+|...|.+++|+|++++|++++ ||.|
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~---------~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~~~~-dg~i 74 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPP---------DALIGPGIPRHARQIN---TLNHGEVVCAVTISNPTRHVYTGG-KGCV 74 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCT---------TSSSSTTCCSEEEEEE---EECCSSCCCEEEECSSSSEEEEEC-BSEE
T ss_pred cCCceeEEEECCCCCEEEeecCC---------CcEeccccCCccccce---eccCCCceEEEEEecCCcEEEEcC-CCeE
Confidence 45689999999999999986544 3344454443333222 346999999999999999999999 9999
Q ss_pred EEEEccCCccccceeeee--cccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc--eeeEeccCCCcEEEEeeccc
Q 001403 413 QLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAK 488 (1084)
Q Consensus 413 ~iwd~~~~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~--~~~~~~~h~~~v~~~~~~~~ 488 (1084)
++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+..|...|.+++|++
T Consensus 75 ~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~- 151 (337)
T 1gxr_A 75 KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP- 151 (337)
T ss_dssp EEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-
T ss_pred EEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC-
Confidence 999999887655544444 7999999999999999 89999999999999999887 6677889999999999965
Q ss_pred CCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccc
Q 001403 489 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 568 (1084)
Q Consensus 489 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 568 (1084)
++.++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++. ++.|++||+.+++.+..+.. .
T Consensus 152 -~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~~~~~~-~- 224 (337)
T 1gxr_A 152 -DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQLQQHDF-T- 224 (337)
T ss_dssp -TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEEC-S-
T ss_pred -CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceEeeecC-C-
Confidence 6789999999999999999998888888889999999999999999999985 67799999999998877753 3
Q ss_pred ccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCe
Q 001403 569 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 648 (1084)
Q Consensus 569 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 648 (1084)
..+.+++|+|+++++++++.++.|++||+.+++... +..+ ...+.+++|+|+++++++++.||.|++|++.+++.
T Consensus 225 --~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 225 --SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp --SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred --CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcCC--ccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE
Confidence 689999999999999999999999999999887653 3333 34699999999999999999999999999987754
Q ss_pred eeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccce
Q 001403 649 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 728 (1084)
Q Consensus 649 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 728 (1084)
+... .+...
T Consensus 300 ~~~~-----------------------------------------------------------------------~~~~~ 308 (337)
T 1gxr_A 300 IFQS-----------------------------------------------------------------------KESSS 308 (337)
T ss_dssp EEEE-----------------------------------------------------------------------ECSSC
T ss_pred EEEe-----------------------------------------------------------------------cCCCc
Confidence 4211 14456
Q ss_pred EEEEEEecCCCeEEEeecCCceEEeec
Q 001403 729 ISRLTYNNGGQAIFALASNGVHLMWRW 755 (1084)
Q Consensus 729 i~~l~~s~~g~~l~~~~~dg~i~vw~~ 755 (1084)
+.+++|+|+++.+++++.||.+++|++
T Consensus 309 v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 309 VLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 788888899988888888999998875
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=337.01 Aligned_cols=298 Identities=17% Similarity=0.278 Sum_probs=245.0
Q ss_pred cceeeecccCCCCceEEEE-----cC-CCceeeeecccccCccccccceEEEEEcCCccc----cceeeeecCCCCCeEE
Q 001403 324 KTVAQTLIEGSSSPMSMDF-----HP-VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSM----LFKTALVRDPGVSVNR 393 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~-----sp-dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~----~~~~~~~~~h~~~V~~ 393 (1084)
..+..+|.+|++.|++++| +| ||++||+|+.| ++|+|||+.+... ......+.+|...|.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D---------~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~ 81 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRD---------KTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSD 81 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETT---------SCEEEEEECSSCCSSBSEEEEEEECCCSSCEEE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCC---------CEEEEEECCcCCcccccccccchhccCCCceEE
Confidence 3466789999999999999 77 99999999988 9999999975432 1123357899999999
Q ss_pred EEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe
Q 001403 394 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 473 (1084)
Q Consensus 394 v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~ 473 (1084)
++|+|++.+|++++.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.. ......
T Consensus 82 ~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~-~~~~~~ 155 (343)
T 2xzm_R 82 LALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILG-ECKFSS 155 (343)
T ss_dssp EEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSS-CEEEEC
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccC-Cceeee
Confidence 9999999999999999999999999987655 6789999999999999999 899999999999999874 333333
Q ss_pred ---ccCCCcEEEEeecccCC--------CcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001403 474 ---EGHGAPVYSLCPHAKEN--------IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 474 ---~~h~~~v~~~~~~~~~~--------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
.+|...|.+++|++... +.++++++.||.|++||. .......+..|...|.+++|+|+|++|++++.
T Consensus 156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~- 233 (343)
T 2xzm_R 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK- 233 (343)
T ss_dssp CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcC-
Confidence 37899999999976432 268999999999999994 44556677888999999999999999999986
Q ss_pred CCCCeeEEEecCCC-ceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE--EEcCC--------
Q 001403 543 KEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDAG-------- 611 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~-------- 611 (1084)
++.|++||+.+ ......+. +. ..|.+++|+|++.+++++ .|+.|++||+.+++... .+...
T Consensus 234 ---dg~v~iwd~~~~~~~~~~~~-~~---~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 305 (343)
T 2xzm_R 234 ---DKKLLIWDILNLTYPQREFD-AG---STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQ 305 (343)
T ss_dssp ---TCEEEEEESSCCSSCSEEEE-CS---SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTB
T ss_pred ---CCeEEEEECCCCcccceeec-CC---CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhh
Confidence 77799999944 43444432 22 569999999999877654 57889999998876543 33211
Q ss_pred -CCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 612 -GGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 612 -~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
++...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 306 ~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 306 KGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred cCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 33456899999999999999999999999998653
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=340.84 Aligned_cols=285 Identities=15% Similarity=0.281 Sum_probs=245.0
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCC------------------CCCeEE
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP------------------GVSVNR 393 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h------------------~~~V~~ 393 (1084)
+|.+.|.+++|||||++||++. | ++++||++.++..... +.+| ...|.+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~---------~~v~i~~~~~g~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~v~~ 128 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-N---------KTTQVYRVSDGSLVAR---LSDDSAANKDPENLNTSSSPSSDLYIRS 128 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-B---------SCEEEEETTTCCEEEE---ECC-----------------CCCCBEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-C---------CcEEEEEecCCCEEEE---ecCccccccccccccccccCCCceeEEE
Confidence 6999999999999999999974 4 7899999987765432 2222 235999
Q ss_pred EEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe
Q 001403 394 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 473 (1084)
Q Consensus 394 v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~ 473 (1084)
++|+|||++||+|+.|++|+|||+.+++.+. .+.+|...|.+++|+|+++ .|++++.|++|++||++++++...+
T Consensus 129 v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEE
Confidence 9999999999999999999999999986554 6789999999999999999 8999999999999999999988877
Q ss_pred ccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee-------cCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001403 474 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGE 546 (1084)
Q Consensus 474 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 546 (1084)
. +...+.++++++. ++.++++++.||.|++||+.++.....+ ..|...|.+++|+|+|++|++++. +
T Consensus 204 ~-~~~~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d 277 (393)
T 1erj_A 204 S-IEDGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----D 277 (393)
T ss_dssp E-CSSCEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----T
T ss_pred E-cCCCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----C
Confidence 6 5677999999653 6689999999999999999988766555 467789999999999999999986 6
Q ss_pred eeEEEecCCCc------------eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCC
Q 001403 547 SFLVEWNESEG------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 614 (1084)
Q Consensus 547 ~~i~~wd~~~~------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 614 (1084)
+.|++||+.+. .+...+.+|. ..|.+++|+|++.+|++|+.||.|++||..+++.+..+..|..
T Consensus 278 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~- 353 (393)
T 1erj_A 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN- 353 (393)
T ss_dssp SEEEEEEC---------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS-
T ss_pred CEEEEEECCCCCCcccccCCCCCcceEEEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC-
Confidence 77999998763 3455667777 8899999999999999999999999999999999999887654
Q ss_pred CCcceEEEec------CCCEEEEEECCCeEEEEEcCC
Q 001403 615 PENPRICFNK------NGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 615 ~~v~~v~~s~------~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
.|.+++|++ ++++|++++.||.|++|+...
T Consensus 354 -~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 354 -SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp -CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred -CEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 689999886 688999999999999999764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-37 Score=347.03 Aligned_cols=291 Identities=15% Similarity=0.165 Sum_probs=256.8
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
.+.+|...|.+++|+|+|++||+|+.|++|+|||+.+++... .+..|...|.+++|+|+|+ ++++|+.|+.|++|
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw 135 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIF 135 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEE
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEE
Confidence 378999999999999999999999999999999999986554 7789999999999999999 89999999999999
Q ss_pred ECCCCc-------eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee-----cCCCCeEEEEEEc
Q 001403 463 DAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-----DAPGLGCTRMAYS 530 (1084)
Q Consensus 463 d~~~g~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~~~~~i~~~~~s 530 (1084)
|+.+.. ....+.+|.+.|.++.|.+.. +..|++++.|++|++||+.+++....+ ..|...+.+++|+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ-ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS-SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCC-CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 987532 345678999999999997653 457999999999999999998877666 5677789999997
Q ss_pred C-CCCEEEEEeeCCCCCeeEEEecCC-CceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 001403 531 A-NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 608 (1084)
Q Consensus 531 ~-d~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 608 (1084)
+ +++++++++. ++.|++||++ +++.+..+.+|. ..|.+++|+|++++|++|+.||+|++||+.+++.+..+
T Consensus 215 ~~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~ 287 (380)
T 3iz6_a 215 SLNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHE---GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVY 287 (380)
T ss_dssp SSSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCS---SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred cCCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcC---CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEe
Confidence 7 8899999986 6679999998 557788888888 89999999999999999999999999999999999888
Q ss_pred cCCCC-----CCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeec----cccccceeEEEEcCCCceeeeeccCce
Q 001403 609 DAGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA----GVLSDNLRKLSVNPISTVTGAGIANGS 679 (1084)
Q Consensus 609 ~~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~i~~~~~~p~~~~~~~~~~~~~ 679 (1084)
..+.. ...+.+++|+|+|+++++|+.||.|++||...++....+ .+|...|.+++|+
T Consensus 288 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s-------------- 353 (380)
T 3iz6_a 288 NREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS-------------- 353 (380)
T ss_dssp CCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC--------------
T ss_pred cccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC--------------
Confidence 65422 234789999999999999999999999999988877666 6788999999997
Q ss_pred eEecCCCCCCCCccceecccCccccccce
Q 001403 680 VSVNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 680 ~~~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
|++.++++++.|+++++|++.
T Consensus 354 --------~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 354 --------SDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp --------SSSSEEEEECTTSCEEEEECC
T ss_pred --------CCCCEEEEeeCCCCEEEEecC
Confidence 678899999999999999976
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=325.33 Aligned_cols=291 Identities=20% Similarity=0.287 Sum_probs=259.3
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
.+.+|...|.+++|+|+|++||+++.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 377899999999999999999999999999999999887554 6789999999999999999 89999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
|+++++.+..+.+|...|.+++|++ ++.++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 9999999999999999999999965 6689999999999999999999988899999999999999999999999986
Q ss_pred CCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEE
Q 001403 543 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 622 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 622 (1084)
++.|++||+.+++.+..+.... ...+..++|+|+++++++++.||.|++||+.+++.+..+..+..........+
T Consensus 170 ---d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 170 ---DGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244 (312)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSS--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred ---CCcEEEEECCCCceeeEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence 6679999999998877765433 36799999999999999999999999999999999999887655333334445
Q ss_pred e-cCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceec--cc
Q 001403 623 N-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--AE 699 (1084)
Q Consensus 623 s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~d 699 (1084)
+ +++.++++++.||.|++||+.+++.+..+.+|...+.+++++ |++..+++++ .|
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----------------------p~~~~l~s~~~~~d 302 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH----------------------PTENIIASAALEND 302 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------SSSSEEEEEECTTT
T ss_pred EeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeec----------------------CcCCceEEEEccCC
Confidence 4 678899999999999999999999999999999999999998 5566677775 68
Q ss_pred Cccccccce
Q 001403 700 NKSEVEKPL 708 (1084)
Q Consensus 700 ~~i~~w~~~ 708 (1084)
+++++|+.+
T Consensus 303 ~~i~~W~~d 311 (312)
T 4ery_A 303 KTIKLWKSD 311 (312)
T ss_dssp CCEEEEECC
T ss_pred ccEEEecCC
Confidence 999999864
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-36 Score=332.16 Aligned_cols=297 Identities=17% Similarity=0.213 Sum_probs=238.3
Q ss_pred ccc-eEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEec
Q 001403 725 KAN-KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 803 (1084)
Q Consensus 725 ~~~-~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 803 (1084)
|.. .|..++|+|+|+.|++++.|+.|++|++..+.. .....+ ..+|...|.+++|+
T Consensus 14 h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~----------------------~~~~~~-~~~h~~~v~~~~~s 70 (345)
T 3fm0_A 14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW----------------------ICKSVL-SEGHQRTVRKVAWS 70 (345)
T ss_dssp STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE----------------------EEEEEE-CSSCSSCEEEEEEC
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc----------------------eeeeee-ccccCCcEEEEEEC
Confidence 665 899999999999999999999999999764321 000000 11488999999999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCc--eeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc---eeeeeeccc
Q 001403 804 KNDAYLFSAS-GGVISLYIVMTF--KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGH 877 (1084)
Q Consensus 804 ~dg~~l~~~s-dg~i~vwd~~~~--~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~---~~~~~l~~h 877 (1084)
|+|++|++++ |+++++|++.++ +.+..+.+|...|.+++|+| ++++|++|+.|++|++||+.++ +++..+.+|
T Consensus 71 p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h 149 (345)
T 3fm0_A 71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC
T ss_pred CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc
Confidence 9999999998 899999999876 46788999999999999999 8999999999999999999876 456778899
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEc
Q 001403 878 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEA 956 (1084)
Q Consensus 878 ~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~ 956 (1084)
...|.+++|+|++++|++++.|++|++||+..+.. .+.....+|.. .|.+++|+|+|++||+ +.|++|++|+.
T Consensus 150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~~---~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHES---TVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCSS---CEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCCC---ceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 99999999999999999999999999999987542 23344556655 8999999999999999 58899999996
Q ss_pred CCc---------------ceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee----EEeccccccCCC
Q 001403 957 EEL---------------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ----CRILSTAYLRPT 1017 (1084)
Q Consensus 957 ~~~---------------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~ 1017 (1084)
... +++..+...|...|.+++|+|++.+|++++.|+.|++|+...+... ..+. .....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~--~~~~~- 300 (345)
T 3fm0_A 224 YLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT--AHLHQ- 300 (345)
T ss_dssp ECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE--EEETT-
T ss_pred ccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE--eeecc-
Confidence 321 2334444448999999999999999999999999999998865321 1111 00111
Q ss_pred CcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 1018 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1018 ~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
.|...|. +++|+|+++.+|++|+.||+|++|++....
T Consensus 301 ~h~~~V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 301 AHSQDVN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp SSSSCEE--EEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred cccCcEe--EeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 1344455 789999644699999999999999996655
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-37 Score=352.56 Aligned_cols=358 Identities=13% Similarity=0.182 Sum_probs=272.0
Q ss_pred CCceEEEEcCCCc-eeeeecccccCccc----cccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 001403 335 SSPMSMDFHPVQH-TLLLGLWDVNSGQK----LFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 409 (1084)
Q Consensus 335 ~~V~~v~~spdg~-~las~~~d~~sg~~----~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d 409 (1084)
..|.+++|||||+ +||++..+ |.. -.++.|+|||+.+........ ...|...|.+++|+|++++||+++.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~---g~~~~~~~~d~~v~iw~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d 88 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVS---GTVDANFSTDSSLELWSLLAADSEKPIA-SLQVDSKFNDLDWSHNNKIIAGALDN 88 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBS---SCCCSSCCCCCCCEEEESSSGGGCSCSC-CCCCSSCEEEEEECSSSSCEEEEESS
T ss_pred hhcceEeeCCCCCCEEEEEecC---cccccccCCCCeEEEEEccCCCCCcEEE-EEecCCceEEEEECCCCCeEEEEccC
Confidence 4789999999997 89998221 100 012899999998865321111 23588999999999999999999999
Q ss_pred CEEEEEEccCCcc-ccceeeeecccccEeEEEeecC-CCcEEEEEEeCCCcEEEEECCCCc------eee---EeccCCC
Q 001403 410 HIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS------RTY---SFEGHGA 478 (1084)
Q Consensus 410 g~v~iwd~~~~~~-~~~~~~l~~h~~~V~~l~~s~d-~~~l~l~s~~~d~~i~vwd~~~g~------~~~---~~~~h~~ 478 (1084)
|.|++||+.+... ......+.+|...|.+++|+|+ +. ++++++.|+.|++||+.+++ ... .+.+|..
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 166 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccccccccccccccCCCC
Confidence 9999999987211 1233467899999999999998 66 79999999999999999887 333 3467999
Q ss_pred cEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCC------CCeEEEEEEcCCC-CEEEEEeeCCCCCeeEEE
Q 001403 479 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANG-RRLFSCGTSKEGESFLVE 551 (1084)
Q Consensus 479 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~~ 551 (1084)
.|.+++|++. ++.++++++.||.|++||+++.+....+..+ ...+.+++|+|++ .++++++.++ .++.|++
T Consensus 167 ~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~~~~i~~ 244 (416)
T 2pm9_A 167 EVISLAWNQS-LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD-NDPSILI 244 (416)
T ss_dssp CCCEEEECSS-CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS-SSCCCCE
T ss_pred CeeEEEeCCC-CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC-CCceEEE
Confidence 9999999664 1579999999999999999998888777766 6789999999997 5788776522 1227999
Q ss_pred ecCCCc-eEeeeee-ccccccCceEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCC-C
Q 001403 552 WNESEG-AIKRTYQ-GLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG-T 627 (1084)
Q Consensus 552 wd~~~~-~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~ 627 (1084)
||++++ ..+..+. +|. ..|.+++|+| ++++|++++.||.|++||+.+++.+..+..+.. .|.+++|+|++ .
T Consensus 245 ~d~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~ 319 (416)
T 2pm9_A 245 WDLRNANTPLQTLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN--WCFKTKFAPEAPD 319 (416)
T ss_dssp EETTSTTSCSBCCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS--CCCCEEECTTCTT
T ss_pred EeCCCCCCCcEEeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC--ceEEEEECCCCCC
Confidence 999986 6667777 777 8999999999 899999999999999999999999999986654 68999999998 8
Q ss_pred EEEEEECCCeEEEEEcCCCCeeeeccc--cccceeEEEEcCCCceee---------------eeccCceeEecCCCCCCC
Q 001403 628 LLAVIANENRIKILETPESNSVDAAGV--LSDNLRKLSVNPISTVTG---------------AGIANGSVSVNEDPKEDV 690 (1084)
Q Consensus 628 ~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~~---------------~~~~~~~~~~~~~~s~~~ 690 (1084)
++++++.|+.|++|++.+......... .........+.+.....+ .......++| +|+|
T Consensus 320 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----s~dg 395 (416)
T 2pm9_A 320 LFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHW----AFGG 395 (416)
T ss_dssp EEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEE----ETTT
T ss_pred EEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEE----eeCC
Confidence 999999999999999987754332211 000000011111100000 0001113334 6899
Q ss_pred CccceecccCcccccccee
Q 001403 691 KPEISVEAENKSEVEKPLF 709 (1084)
Q Consensus 691 ~~l~~~~~d~~i~~w~~~~ 709 (1084)
+++++++.|++|++|++.+
T Consensus 396 ~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 396 KLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp EEECBCTTSSCBCCBCCCC
T ss_pred eEEEEeCCCCeEEEEEecc
Confidence 9999999999999999863
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=372.30 Aligned_cols=526 Identities=11% Similarity=0.000 Sum_probs=374.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC------CCcEE
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIK 460 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~------d~~i~ 460 (1084)
+...+.+++||| +.||.++. +.|.+|++.+++.. .+.+|...+.+++|||||+ .|++++. +..|+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence 456889999995 58888876 68999999987532 5778999999999999999 5666543 24799
Q ss_pred EEECCCCceeeEeccCCCcE-------EEEeecccCCCcEEEEEecC------CeEEEEECCCCCceEeecCCCCeEEEE
Q 001403 461 VWDAVTGSRTYSFEGHGAPV-------YSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRM 527 (1084)
Q Consensus 461 vwd~~~g~~~~~~~~h~~~v-------~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~ 527 (1084)
+||+.+++ ...+..|...+ ..++|+| ||+++++++.+ ..|..|++..+........ ....+
T Consensus 84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---~~~~~ 157 (1045)
T 1k32_A 84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLG---PATHI 157 (1045)
T ss_dssp EEETTTTE-EEECCCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSC---SCSEE
T ss_pred EEECCCCC-eEEcccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEEecCC---Cccee
Confidence 99998876 57788898888 8999965 66777777754 3577777765543322222 22356
Q ss_pred EEcCCCCEEEEEeeCCC--------CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 001403 528 AYSANGRRLFSCGTSKE--------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 599 (1084)
Q Consensus 528 ~~s~d~~~l~~~~~~~~--------~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 599 (1084)
+|+| | ++++++.+.+ +.....+|....+.....+.+|. ..+.++.|+++ ..+++++.++.+.+|.+
T Consensus 158 ~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~---~~v~~~~~s~d-~l~~~~~~dg~~~l~~~ 231 (1045)
T 1k32_A 158 LFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS---THVSSPVIVGH-RIYFITDIDGFGQIYST 231 (1045)
T ss_dssp EEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS---SCCEEEEEETT-EEEEEECTTSSCEEEEE
T ss_pred eeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC---CcccceEEeCC-EEEEEEeccCceEEEEE
Confidence 7999 8 7777643211 12234455333223444556666 88999999988 56667788899999976
Q ss_pred CC-CeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccc-----------cccceeEEEEcCC
Q 001403 600 NK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV-----------LSDNLRKLSVNPI 667 (1084)
Q Consensus 600 ~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~i~~~~~~p~ 667 (1084)
.. +.....+..+. .+...+|+|||+.++++. ++.|++|+.... .+..+.. +...+.+++|+|
T Consensus 232 ~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~- 305 (1045)
T 1k32_A 232 DLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSP- 305 (1045)
T ss_dssp ETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEE-
T ss_pred eCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccccccccccccccceeeecC-
Confidence 53 33444444333 356789999999998884 789999998443 3334433 122344555540
Q ss_pred CceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccc-eEEEEEEecCCCeEEEeec
Q 001403 668 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN-KISRLTYNNGGQAIFALAS 746 (1084)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~~~~~ 746 (1084)
|+|+.+++++ ++.+.+|+...... .. + ..+.. .+..++|+ ||+.++.++.
T Consensus 306 --------------------pdG~~la~~~-~~~i~~~~~~~~~~---~~--~--~~~~~~~~~~~~~s-dg~~l~~~s~ 356 (1045)
T 1k32_A 306 --------------------LDGDLIAFVS-RGQAFIQDVSGTYV---LK--V--PEPLRIRYVRRGGD-TKVAFIHGTR 356 (1045)
T ss_dssp --------------------CGGGCEEEEE-TTEEEEECTTSSBE---EE--C--SCCSCEEEEEECSS-SEEEEEEEET
T ss_pred --------------------CCCCEEEEEE-cCEEEEEcCCCCce---EE--c--cCCCcceEEeeeEc-CCCeEEEEEC
Confidence 5666676666 67788888653221 11 1 12445 78999999 9999998887
Q ss_pred CCceE-EeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCC
Q 001403 747 NGVHL-MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMT 824 (1084)
Q Consensus 747 dg~i~-vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~ 824 (1084)
++.+. +|+... +. ... +. .+...+..++|||||++|++++ ++.|++||+.+
T Consensus 357 ~~~l~~~~d~~~----------------------~~-~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t 409 (1045)
T 1k32_A 357 EGDFLGIYDYRT----------------------GK-AEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET 409 (1045)
T ss_dssp TEEEEEEEETTT----------------------CC-EEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCceEEEEECCC----------------------CC-ceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCC
Confidence 66666 665432 22 111 11 2667889999999999999988 68999999999
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCC----------eEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEE
Q 001403 825 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----------TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 894 (1084)
Q Consensus 825 ~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg----------~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~ 894 (1084)
++....+.+|...+.+++||| ||++|++++.++ .|++||+.+++ +..+..|...+.+++|+|||++|+
T Consensus 410 g~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~ 487 (1045)
T 1k32_A 410 GKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLY 487 (1045)
T ss_dssp CCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEE
T ss_pred CceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEE
Confidence 998888878888999999999 899888887644 99999999887 677888888899999999999999
Q ss_pred EEeCCCcEEEEeCCCCceeee-----eee--e---------------------cCCCC-------ccCCCCceEEEEccC
Q 001403 895 SSGGDAQIFVWDVDGWGIQTC-----RSL--Q---------------------TPDGV-------MTLAPSETHIQFHKD 939 (1084)
Q Consensus 895 s~s~dg~I~iwd~~~~~~~~~-----~~~--~---------------------~~~~~-------~~~~~~v~~~~~s~d 939 (1084)
+++.++...+|+......... ..+ . ...+. ....+.+..++|+||
T Consensus 488 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~d 567 (1045)
T 1k32_A 488 YLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES 567 (1045)
T ss_dssp EEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSS
T ss_pred EEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCC
Confidence 999988888887654322000 000 0 00110 001236789999999
Q ss_pred CCEEEE------------E--eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 001403 940 QTRFLL------------V--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1003 (1084)
Q Consensus 940 g~~la~------------~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~ 1003 (1084)
|+++++ + ....|.+||+.+++.... . ..+.+++|||||++|++++.| .|++||+.+++
T Consensus 568 g~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 568 SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV-K----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE-E----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred CeEEEEecccCcccccccccCCCceEEEEECCCCcEEEe-e----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 998875 1 245789999988875432 2 468899999999999998766 89999999887
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=326.45 Aligned_cols=300 Identities=19% Similarity=0.267 Sum_probs=260.1
Q ss_pred ceeeecccCCCCceEEEEcCC-CceeeeecccccCccccccceEEEEEcCCcccc--ceeeeecCCCCCeEEEEEcCCCC
Q 001403 325 TVAQTLIEGSSSPMSMDFHPV-QHTLLLGLWDVNSGQKLFIRNFKVWDIGACSML--FKTALVRDPGVSVNRVVWSPDGS 401 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spd-g~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~--~~~~~~~~h~~~V~~v~fspdg~ 401 (1084)
.+..+|.||++.|++++|+|+ +++||+|+.| ++|+|||+.+.... .....+.+|...|.+++|+|||+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D---------~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~ 99 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRD---------KTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ 99 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETT---------SCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCC---------CeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC
Confidence 345689999999999999998 6899999988 99999999865432 23345789999999999999999
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee-eEeccCCCcE
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPV 480 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~-~~~~~h~~~v 480 (1084)
+|++++.|+.|++|+...+.... ....+...+..+.+++++. .+++++.|+.+++||+...... ....+|...+
T Consensus 100 ~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v 174 (340)
T 4aow_A 100 FALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV 174 (340)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSSCSSCE
T ss_pred EEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEeccccCcc
Confidence 99999999999999999876444 5667888899999999999 7999999999999998766543 4557899999
Q ss_pred EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 481 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 481 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
..++|++.+...++++++.|+.|++||+.+.+....+..+...|.+++|+|++++|++++. ++.|++||+.+++.+
T Consensus 175 ~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~~~~~~ 250 (340)
T 4aow_A 175 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLNEGKHL 250 (340)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETTTTEEE
T ss_pred cceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEeccCcee
Confidence 9999988877789999999999999999999988899999999999999999999999986 677999999999999
Q ss_pred eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC-------CCCCCcceEEEecCCCEEEEEE
Q 001403 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-------GGLPENPRICFNKNGTLLAVIA 633 (1084)
Q Consensus 561 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~v~~s~~~~~l~~~~ 633 (1084)
..+..+. .+.++.|+|++. +++++.|+.|++||++++..+..+... .+...|.+++|+|+|++|++|+
T Consensus 251 ~~~~~~~----~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 325 (340)
T 4aow_A 251 YTLDGGD----IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY 325 (340)
T ss_dssp EEEECSS----CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEE
T ss_pred eeecCCc----eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEe
Confidence 8887654 799999999875 556667999999999999888776532 3445689999999999999999
Q ss_pred CCCeEEEEEcCCCC
Q 001403 634 NENRIKILETPESN 647 (1084)
Q Consensus 634 ~dg~i~iwd~~~~~ 647 (1084)
.||.|+|||+.+|.
T Consensus 326 ~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 326 TDNLVRVWQVTIGT 339 (340)
T ss_dssp TTSCEEEEEEEC--
T ss_pred CCCEEEEEeCCCcC
Confidence 99999999998874
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=323.42 Aligned_cols=306 Identities=15% Similarity=0.178 Sum_probs=230.9
Q ss_pred CceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC--eEEEEEcCCCCCCCcceEEEecCCCEEEEEE
Q 001403 556 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIA 633 (1084)
Q Consensus 556 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 633 (1084)
+.+.+..+.+|. ..|.+++|+|+ +|++|+.|++|++||+.++ .....+....+...|.+++|+|++++|++++
T Consensus 3 ~~~~~~~~~~h~---~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 3 SINLIKSLKLYK---EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp CCEEEEEEECCS---SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeeccCC---CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence 455677888888 89999999987 9999999999999999875 4555553322455799999999999999999
Q ss_pred CCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCc
Q 001403 634 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS 713 (1084)
Q Consensus 634 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~ 713 (1084)
.|+.|++|+........ .
T Consensus 78 ~D~~v~iw~~~~~~~~~-~------------------------------------------------------------- 95 (330)
T 2hes_X 78 FDSTVSIWAKEESADRT-F------------------------------------------------------------- 95 (330)
T ss_dssp TTSCEEEEEC--------C-------------------------------------------------------------
T ss_pred CCCcEEEEEcccCcCcc-c-------------------------------------------------------------
Confidence 99999999975321000 0
Q ss_pred cceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCC
Q 001403 714 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 793 (1084)
Q Consensus 714 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1084)
... + +.. + .+|
T Consensus 96 -----------------------~~~-~--------~~~-----------------------------------~--~~h 106 (330)
T 2hes_X 96 -----------------------EMD-L--------LAI-----------------------------------I--EGH 106 (330)
T ss_dssp -----------------------CCE-E--------EEE-----------------------------------E--C--
T ss_pred -----------------------cce-e--------EEE-----------------------------------E--cCC
Confidence 000 0 000 0 026
Q ss_pred CCCccEEEecCCCCEEEEEe-CCeEEEEEcCC----ceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 001403 794 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 868 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~ 868 (1084)
...|.+++|+|+|++|++++ |++|++||+.. .+.+..+.+|...|.+++|+| ++.+|++|+.|++|++||..++
T Consensus 107 ~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp --CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCC
Confidence 67778888888888888877 68888888732 356778889999999999999 8999999999999999999876
Q ss_pred --eeeeeecccccCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCce---eeeeeeecCCC-CccCCCCceEEEEccCC
Q 001403 869 --EVISKLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGI---QTCRSLQTPDG-VMTLAPSETHIQFHKDQ 940 (1084)
Q Consensus 869 --~~~~~l~~h~~~V~~l~~spd--~~~l~s~s~dg~I~iwd~~~~~~---~~~~~~~~~~~-~~~~~~~v~~~~~s~dg 940 (1084)
+++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+..+.. ....+.....+ |.. .|.+++|++++
T Consensus 186 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~v~~s~~~ 262 (330)
T 2hes_X 186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR---QVYNVAWGFNG 262 (330)
T ss_dssp EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS---CEEEEEECTTS
T ss_pred CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc---ceEEEEEcCCC
Confidence 678899999999999999998 77999999999999999976421 11122233332 443 79999999877
Q ss_pred CEEEEEeCCeEEEEEcCCcc--eeeEeecCCCC-CEEEEEEcc--CCCEEEEEeCCCcEEEEEcCC
Q 001403 941 TRFLLVHETHLAIYEAEELT--CLKQWFPISSV-PISQATFSC--DCRMVFTSFVDGTLSIHEASN 1001 (1084)
Q Consensus 941 ~~la~~~d~~i~vwd~~~~~--~~~~~~~~h~~-~v~~l~fs~--dg~~l~t~~~dg~i~vwd~~~ 1001 (1084)
.++..+.|+.|++|+..+++ .......+|.. .|.+++|+| ++++|++++.||+|++|++.+
T Consensus 263 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 263 LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 54444789999999998774 34444457876 899999999 789999999999999999875
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=323.40 Aligned_cols=320 Identities=13% Similarity=0.145 Sum_probs=266.1
Q ss_pred CCCCCCCCcchhhhcccccCCCccCCCc-cceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCC
Q 001403 296 NIPDYSPKSSLKKEMFQSFGETSFSDFP-KTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGA 374 (1084)
Q Consensus 296 s~~~fsP~~s~~~~~f~~~~~~~~~~~p-~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~ 374 (1084)
.++.|+|++..+........- .....+ ........+|.+.|.+++|+|+|++|+++. | +.|+|||+.+
T Consensus 13 ~~~~~s~dg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-d---------g~i~iw~~~~ 81 (337)
T 1gxr_A 13 YSFHVTADGQMQPVPFPPDAL-IGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-K---------GCVKVWDISH 81 (337)
T ss_dssp CEEEECSSSCEEECCCCTTSS-SSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-B---------SEEEEEETTS
T ss_pred eEEEECCCCCEEEeecCCCcE-eccccCCccccceeccCCCceEEEEEecCCcEEEEcC-C---------CeEEEEECCC
Confidence 357889999887654432211 222223 223334448999999999999999999987 7 9999999987
Q ss_pred ccccceeeeec--CCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEE
Q 001403 375 CSMLFKTALVR--DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT 452 (1084)
Q Consensus 375 ~~~~~~~~~~~--~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s 452 (1084)
.........+. +|...|.+++|+|++++|++++.|+.|++||+.+++.. ....+..|...|.+++|+|+++ ++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~--~l~~ 158 (337)
T 1gxr_A 82 PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK--VCFS 158 (337)
T ss_dssp TTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS--EEEE
T ss_pred CCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECCCCC--EEEE
Confidence 65433332233 79999999999999999999999999999999987632 2336778999999999999999 8999
Q ss_pred EeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCC
Q 001403 453 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN 532 (1084)
Q Consensus 453 ~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d 532 (1084)
++.|+.|++||+++++.+..+.+|...|.+++|++ ++.++++++.||.|++||+++.+....+. +...+.+++|+|+
T Consensus 159 ~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~ 235 (337)
T 1gxr_A 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPT 235 (337)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTT
T ss_pred EeCCCcEEEEeCCCCceeeeeecccCceEEEEECC--CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCC
Confidence 99999999999999999999999999999999965 66899999999999999999887766654 5568999999999
Q ss_pred CCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCC
Q 001403 533 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 612 (1084)
Q Consensus 533 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 612 (1084)
++++++++. ++.|++||+.+++.. .+..|. ..+.+++|+|+++++++++.||.|++||+.+++.+.....
T Consensus 236 ~~~l~~~~~----~~~i~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~-- 305 (337)
T 1gxr_A 236 GEWLAVGME----SSNVEVLHVNKPDKY-QLHLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-- 305 (337)
T ss_dssp SSEEEEEET----TSCEEEEETTSSCEE-EECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--
T ss_pred CCEEEEEcC----CCcEEEEECCCCCeE-EEcCCc---cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecC--
Confidence 999999875 566999999988764 455565 8899999999999999999999999999999988866543
Q ss_pred CCCCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 613 GLPENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 613 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
...+.+++|+|++++|++++.||.|++|++
T Consensus 306 -~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 306 -SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred -CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 235899999999999999999999999986
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=342.49 Aligned_cols=346 Identities=12% Similarity=0.115 Sum_probs=282.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001403 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 469 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~ 469 (1084)
.+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~ 131 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNLQ 131 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcce
Confidence 45579999999999999999999999999887655 34455 4455667899999 899999999999999999999
Q ss_pred eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeE
Q 001403 470 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 549 (1084)
Q Consensus 470 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 549 (1084)
...+.+|...|.+++|++ ++.+|++++.||.|++||+.+.+....+..|...|.+++|+|++++|++++. ++.|
T Consensus 132 ~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~v 205 (420)
T 3vl1_A 132 REIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGTI 205 (420)
T ss_dssp EEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSCE
T ss_pred eeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCcE
Confidence 988899999999999965 6689999999999999999999998899999999999999999999999986 6679
Q ss_pred EEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEE
Q 001403 550 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 629 (1084)
Q Consensus 550 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 629 (1084)
++||+.+++.+..+..+..+...+.+++|.|.+... ... .....+.+++|+|+++++
T Consensus 206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~--~~~~~v~~~~~s~~~~~l 262 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHE--ISTSKKNNLEFGTYGKYV 262 (420)
T ss_dssp EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGG--GCCCCCCTTCSSCTTEEE
T ss_pred EEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eee--cccCcccceEEcCCCCEE
Confidence 999999999999998876666889999887764322 011 112357889999999999
Q ss_pred EEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcccccccee
Q 001403 630 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 709 (1084)
Q Consensus 630 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~ 709 (1084)
++++.||.|++||+.+++....+.
T Consensus 263 ~~~~~dg~i~i~d~~~~~~~~~~~-------------------------------------------------------- 286 (420)
T 3vl1_A 263 IAGHVSGVITVHNVFSKEQTIQLP-------------------------------------------------------- 286 (420)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC--------------------------------------------------------
T ss_pred EEEcCCCeEEEEECCCCceeEEcc--------------------------------------------------------
Confidence 999999999999987653221110
Q ss_pred ecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCc
Q 001403 710 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 789 (1084)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1084)
T Consensus 287 -------------------------------------------------------------------------------- 286 (420)
T 3vl1_A 287 -------------------------------------------------------------------------------- 286 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccEEEecCCCC-EEEEEe-CCeEEEEEcCCcee-EEEEcC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 001403 790 DSNSQEAVPCFALSKNDA-YLFSAS-GGVISLYIVMTFKT-ILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 865 (1084)
Q Consensus 790 ~~~~~~~v~~l~~s~dg~-~l~~~s-dg~i~vwd~~~~~~-~~~~~~-~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~ 865 (1084)
..|...+.+++|+|++. +|++++ ||.|++||+.+++. +..+.. |...+.++.+. ++++|++++.||.|++|++
T Consensus 287 -~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 287 -SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp -CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEEE
T ss_pred -cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEec
Confidence 01556677788888877 777776 68888888887643 566665 56677787554 5789999999999999998
Q ss_pred CCc---------eeeeeecccccCEEEEEEcCCCC---EEEEEeCCCcEEEEeCCC
Q 001403 866 RSS---------EVISKLEGHSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 866 ~~~---------~~~~~l~~h~~~V~~l~~spd~~---~l~s~s~dg~I~iwd~~~ 909 (1084)
.+. .....+.+|.+.|.+++|+|+++ .|++++.+|.+.+|+++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 364 SDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred cCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 873 22234567889999999999999 788888999999999875
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=341.71 Aligned_cols=383 Identities=12% Similarity=0.133 Sum_probs=284.6
Q ss_pred EEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEccC
Q 001403 341 DFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHG 419 (1084)
Q Consensus 341 ~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~las~~~dg~v~iwd~~~ 419 (1084)
.|+|+++.++++. .|+... .. ...+..+|...|++++|+| ++++||+|+.||+|+|||+.+
T Consensus 34 ~f~~~~~~~~~~~---------------~w~~~g-~~--~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~ 95 (437)
T 3gre_A 34 EFGPIQEIVRSPN---------------MGNLRG-KL--IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKE 95 (437)
T ss_dssp GGCCCCCCCCCCC---------------GGGCCC-CE--EEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHH
T ss_pred hcCCccccccccc---------------cccccc-eE--EeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcc
Confidence 4789999888852 133221 11 1122378999999999999 999999999999999999987
Q ss_pred ---CccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC---CCceeeEeccCCCcEEEEeecccCCCcE
Q 001403 420 ---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLCPHAKENIHF 493 (1084)
Q Consensus 420 ---~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~---~g~~~~~~~~h~~~v~~~~~~~~~~~~~ 493 (1084)
+...+....+ +|.+.|.+++|+|+++ +|++++.|++|++||++ +++.+..+.+| .+..+.+++.+
T Consensus 96 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~---- 166 (437)
T 3gre_A 96 IIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG---- 166 (437)
T ss_dssp HHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS----
T ss_pred cccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc----
Confidence 5433333233 5999999999999999 89999999999999994 77777777766 67777775531
Q ss_pred EEEEecCCeEEEEECCCCCceEeecCCCCeEEEEE--EcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeec--cccc
Q 001403 494 IFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA--YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG--LQLQ 569 (1084)
Q Consensus 494 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~--~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~--~~~~ 569 (1084)
+...+.++. +++++.++++++. ++.|++||+++++.+..+.+ |.
T Consensus 167 --------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~h~-- 214 (437)
T 3gre_A 167 --------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERLQIIENSPRH-- 214 (437)
T ss_dssp --------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEEEEEECCGGG--
T ss_pred --------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeeeEEEccCCCC--
Confidence 112333444 6789999999986 67799999999999999988 55
Q ss_pred cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEe----cCCCEEEEEECCCeEEEEEcCC
Q 001403 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN----KNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
..|.+++|+|++++|++|+.||.|++||+++++.+..+..... ..|.+++|+ |++.++++++.||.|++||+.+
T Consensus 215 -~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 215 -GAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp -CCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC-EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred -CceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC-CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence 8999999999999999999999999999999999998863222 358899665 4688999999999999999999
Q ss_pred CCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccc
Q 001403 646 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 725 (1084)
Q Consensus 646 ~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 725 (1084)
++.+..+.++...+..+.++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 312 (437)
T 3gre_A 293 GHCQYAFINSDEQPSMEHFL------------------------------------------------------------ 312 (437)
T ss_dssp TEEEEEEESSSSCCCGGGGS------------------------------------------------------------
T ss_pred CcEEEEEEcCCCCCccceec------------------------------------------------------------
Confidence 88887777665544333332
Q ss_pred cceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCC
Q 001403 726 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 805 (1084)
Q Consensus 726 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 805 (1084)
|+++.+ .+ ..+.+..|...|.+++|+ +
T Consensus 313 ----------~~~~~l----~~--------------------------------------~~~~~~~~~~~v~~l~~~-~ 339 (437)
T 3gre_A 313 ----------PIEKGL----EE--------------------------------------LNFCGIRSLNALSTISVS-N 339 (437)
T ss_dssp ----------CBCSSG----GG--------------------------------------CCCCCCCSGGGGCCEEEE-T
T ss_pred ----------cccccc----cc--------------------------------------ceecccccCCceEEEEEC-C
Confidence 222111 00 000111277889999999 7
Q ss_pred CCEEEEEe-CCeEEEEEcCCceeEEEEcCCC---CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCE
Q 001403 806 DAYLFSAS-GGVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV 881 (1084)
Q Consensus 806 g~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V 881 (1084)
+++|++++ |+.|++||+.+++....+.+|. ..+....+++ +..+++.. |+...+........|.+.|
T Consensus 340 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~I 410 (437)
T 3gre_A 340 DKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDII 410 (437)
T ss_dssp TEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------------CCCE
T ss_pred ceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCcccccccce
Confidence 88899988 8999999999999999888764 3456667777 55555444 3334445556667799999
Q ss_pred EEEEEcCC--CCEEEEEeCCCcEEEEe
Q 001403 882 TGLVFSDA--LNILVSSGGDAQIFVWD 906 (1084)
Q Consensus 882 ~~l~~spd--~~~l~s~s~dg~I~iwd 906 (1084)
++++|+++ +.+|++|+.||.|+||+
T Consensus 411 ~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 411 NSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred eeEeeeccCCceEEEEEcCCceEEEeC
Confidence 99999998 78999999999999995
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=332.53 Aligned_cols=290 Identities=17% Similarity=0.229 Sum_probs=248.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeeccc------------------ccEeEEEeecCCCc
Q 001403 386 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV------------------GNVNDLAFSAPCKQ 447 (1084)
Q Consensus 386 ~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~------------------~~V~~l~~s~d~~~ 447 (1084)
+|...|.+++|||||++||+|+ ++.++||++.+++.+. .+..|. ..|.+++|+|||+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 4999999999999999999987 6789999999987654 333332 2499999999999
Q ss_pred EEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEE
Q 001403 448 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 527 (1084)
Q Consensus 448 l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 527 (1084)
+|++|+.|++|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+.+++....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 899999999999999999999999999999999999965 66899999999999999999887766665 34578999
Q ss_pred EEcC-CCCEEEEEeeCCCCCeeEEEecCCCceEeeee-------eccccccCceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 001403 528 AYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTY-------QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 599 (1084)
Q Consensus 528 ~~s~-d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 599 (1084)
+|+| +++++++++. ++.|++||+.+++.+..+ .+|. ..|.+++|+|++++|++++.||.|++||+
T Consensus 213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~d~~v~~wd~ 285 (393)
T 1erj_A 213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHK---DSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285 (393)
T ss_dssp EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCS---SCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCC---CCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9999 8999999986 667999999999888776 3444 88999999999999999999999999999
Q ss_pred CCCe------------EEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCC
Q 001403 600 NKVQ------------LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 667 (1084)
Q Consensus 600 ~~~~------------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~ 667 (1084)
.+.. +...+..|. ..|.+++|+|++.+|++++.|+.|++||..+++.+..+.+|...|.++++++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~ 363 (393)
T 1erj_A 286 QNANNKSDSKTPNSGTCEVTYIGHK--DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 363 (393)
T ss_dssp ---------------CEEEEEECCS--SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred CCCCCcccccCCCCCcceEEEeccc--CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCC
Confidence 7643 344455443 46899999999999999999999999999999999999999999999999864
Q ss_pred CceeeeeccCceeEecCCCCCCCCccceecccCcccccccee
Q 001403 668 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 709 (1084)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~ 709 (1084)
... .|++.++++++.|+++++|++..
T Consensus 364 ~~~----------------~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 364 SSL----------------GPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp CTT----------------CTTCEEEEEEETTSEEEEEEEEE
T ss_pred cCc----------------CCCCCEEEEECCCCcEEECcccc
Confidence 322 47889999999999999999863
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=348.31 Aligned_cols=337 Identities=15% Similarity=0.238 Sum_probs=265.9
Q ss_pred CceEEEEEcCCCC-EEEEE----------ECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEE
Q 001403 571 NSVSVVHFDTAKD-QILAA----------GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 639 (1084)
Q Consensus 571 ~~v~~~~~s~~~~-~l~~~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 639 (1084)
..+.+++|+|+++ +++++ +.|+.|++||+.++.....+....+...|.+++|+|++++|++++.||.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 3578899999987 88888 899999999999876322221112344699999999999999999999999
Q ss_pred EEEcCCC----CeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccc
Q 001403 640 ILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC 715 (1084)
Q Consensus 640 iwd~~~~----~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~ 715 (1084)
+|++.+. +.+..+.
T Consensus 93 vw~~~~~~~~~~~~~~~~-------------------------------------------------------------- 110 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFS-------------------------------------------------------------- 110 (416)
T ss_dssp EECCSSTTSCCCEEEECC--------------------------------------------------------------
T ss_pred Eeecccccccccchhhcc--------------------------------------------------------------
Confidence 9998862 2222222
Q ss_pred eeeccCCccccceEEEEEEecC-CCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCC
Q 001403 716 QSLLLPSKVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 794 (1084)
Q Consensus 716 ~~~~~~~~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1084)
.|...|.+++|+|+ +..+++++.||.|++|++......... + ..... .....|.
T Consensus 111 --------~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~----------~------~~~~~-~~~~~~~ 165 (416)
T 2pm9_A 111 --------NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN----------Y------TPLTP-GQSMSSV 165 (416)
T ss_dssp --------CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT----------C------CCBCC-CCSCCSS
T ss_pred --------CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc----------c------ccccc-ccccCCC
Confidence 25567778888887 788888888999998887654310000 0 00000 0011488
Q ss_pred CCccEEEecCC-CCEEEEEe-CCeEEEEEcCCceeEEEEcCC------CCCeEEEEEcCCCCcEEEEEeCCC---eEEEE
Q 001403 795 EAVPCFALSKN-DAYLFSAS-GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGMDDS---TILIY 863 (1084)
Q Consensus 795 ~~v~~l~~s~d-g~~l~~~s-dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~la~g~~dg---~i~iw 863 (1084)
..|.+++|+|+ +.++++++ ++.|++||+.+++.+..+..+ ...|.+++|+|++..++++++.|+ .|++|
T Consensus 166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~ 245 (416)
T 2pm9_A 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW 245 (416)
T ss_dssp CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence 89999999999 78888887 799999999999999998876 788999999994447999999999 99999
Q ss_pred EcCCc-eeeeeec-ccccCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCC
Q 001403 864 NARSS-EVISKLE-GHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 940 (1084)
Q Consensus 864 d~~~~-~~~~~l~-~h~~~V~~l~~sp-d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 940 (1084)
|+.++ +.+..+. +|...|++++|+| ++++|++++.||+|++||+.+++. +....+|.. .|.+++|+|++
T Consensus 246 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~-----~~~~~~~~~---~v~~~~~s~~~ 317 (416)
T 2pm9_A 246 DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ-----LSQFPARGN---WCFKTKFAPEA 317 (416)
T ss_dssp ETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE-----EEEEECSSS---CCCCEEECTTC
T ss_pred eCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc-----ceeecCCCC---ceEEEEECCCC
Confidence 99986 6778888 9999999999999 999999999999999999998653 333344443 79999999999
Q ss_pred -CEEEE-EeCCeEEEEEcCCcceeeEe----------------------------------ecCCCCCEEEEEEccCCCE
Q 001403 941 -TRFLL-VHETHLAIYEAEELTCLKQW----------------------------------FPISSVPISQATFSCDCRM 984 (1084)
Q Consensus 941 -~~la~-~~d~~i~vwd~~~~~~~~~~----------------------------------~~~h~~~v~~l~fs~dg~~ 984 (1084)
.+|++ +.|+.|++||+.++...... ...|..++.+++|+|||++
T Consensus 318 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 397 (416)
T 2pm9_A 318 PDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKL 397 (416)
T ss_dssp TTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEE
T ss_pred CCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeE
Confidence 88888 58999999999877643321 0115678889999999999
Q ss_pred EEEEeCCCcEEEEEcCCC
Q 001403 985 VFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 985 l~t~~~dg~i~vwd~~~~ 1002 (1084)
|++++.||.|+||++.+.
T Consensus 398 la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 398 VQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ECBCTTSSCBCCBCCCCC
T ss_pred EEEeCCCCeEEEEEeccC
Confidence 999999999999999875
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=340.88 Aligned_cols=349 Identities=11% Similarity=0.099 Sum_probs=282.4
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 415 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iw 415 (1084)
.+.+++|+|||++||++..| +.+++||+.+...... +.+| ..+....|+|++++||+++.|+.|++|
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d---------~~v~i~d~~~~~~~~~---~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iw 124 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLD---------GHDFLFNTIIRDGSKM---LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVL 124 (420)
T ss_dssp CCTTCEEEEEETTEEEEEET---------TEEEEEECCSEETTTT---SCSC-CEEEEEEECSSSCEEEEEETTSCEEEE
T ss_pred cccceeeeecCCeEEEEEcC---------CcEEEEEecccceeeE---EecC-CceEEEEEecCCCEEEEEECCCCEEEE
Confidence 45689999999999999888 9999999987665433 3334 455566889999999999999999999
Q ss_pred EccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEE
Q 001403 416 AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF 495 (1084)
Q Consensus 416 d~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 495 (1084)
|+.+++... .+.+|.+.|++++|+|+++ +|++++.|++|++||+.+++.+..+.+|...|.+++|++ ++.+|+
T Consensus 125 d~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~ 197 (420)
T 3vl1_A 125 DSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID--RGRNVL 197 (420)
T ss_dssp CTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET--TTTEEE
T ss_pred eCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC--CCCEEE
Confidence 999886544 5679999999999999999 899999999999999999999999999999999999965 678999
Q ss_pred EEecCCeEEEEECCCCCceEeecC---CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCc
Q 001403 496 SISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 572 (1084)
Q Consensus 496 s~s~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~ 572 (1084)
+++.||.|++||+.+++....+.. +...+.++++.+++... ....+. ..
T Consensus 198 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------------------------~~~~~~---~~ 249 (420)
T 3vl1_A 198 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ-------------------------LHEIST---SK 249 (420)
T ss_dssp EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS-------------------------CGGGCC---CC
T ss_pred EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce-------------------------eeeccc---Cc
Confidence 999999999999998887777664 44567777776543221 011122 56
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC-EEEEEECCCeEEEEEcCCCCe-ee
Q 001403 573 VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPESNS-VD 650 (1084)
Q Consensus 573 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~~~-~~ 650 (1084)
+.+++|+|+++++++++.||.|++||+.+++....+... +...+.+++|+|++. ++++++.||.|++||+.+++. +.
T Consensus 250 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 328 (420)
T 3vl1_A 250 KNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG 328 (420)
T ss_dssp CCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE
T ss_pred ccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchh
Confidence 888899999999999999999999999999888777542 234699999999999 999999999999999998744 56
Q ss_pred eccc-cccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeec---cCCcccc
Q 001403 651 AAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL---LPSKVKA 726 (1084)
Q Consensus 651 ~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~---~~~~~~~ 726 (1084)
.+.. +...+.++.+ ++++++++++.|+.+++|++............ .....+.
T Consensus 329 ~~~~~~~~~v~~~~~-----------------------~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 385 (420)
T 3vl1_A 329 EFLINEGTPINNVYF-----------------------AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSND 385 (420)
T ss_dssp EEEESTTSCEEEEEE-----------------------ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSS
T ss_pred hhhccCCCCceEEEe-----------------------CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCC
Confidence 6665 5555665544 35778999999999999998753322111100 0113477
Q ss_pred ceEEEEEEecCCC---eEEEeecCCceEEeecc
Q 001403 727 NKISRLTYNNGGQ---AIFALASNGVHLMWRWP 756 (1084)
Q Consensus 727 ~~i~~l~~s~~g~---~l~~~~~dg~i~vw~~~ 756 (1084)
..|.+++|+|++. .+++++.+|.+.+|++.
T Consensus 386 ~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 386 DAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp CCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred cceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 8899999999999 89999999999999864
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=321.32 Aligned_cols=290 Identities=20% Similarity=0.225 Sum_probs=240.8
Q ss_pred eeecCCCCCeEEEEE-----cC-CCCEEEEEeCCCEEEEEEccCCccc----cceeeeecccccEeEEEeecCCCcEEEE
Q 001403 382 ALVRDPGVSVNRVVW-----SP-DGSLLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVI 451 (1084)
Q Consensus 382 ~~~~~h~~~V~~v~f-----sp-dg~~las~~~dg~v~iwd~~~~~~~----~~~~~l~~h~~~V~~l~~s~d~~~l~l~ 451 (1084)
..+.+|...|++++| ++ |+++||+|+.|++|++||+.+++.. .....+.+|...|.+++|+|++. +++
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~ 92 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAI 92 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEE
Confidence 347899999999999 77 9999999999999999999865421 23346789999999999999999 899
Q ss_pred EEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec---CCCCeEEEEE
Q 001403 452 TCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMA 528 (1084)
Q Consensus 452 s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~ 528 (1084)
+|+.|++|++||+++++.+..+.+|...|.+++|+| ++.+|++++.|+.|++||+.. ....... .+...+.+++
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVR 169 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeee
Confidence 999999999999999999999999999999999965 678999999999999999973 3333322 5667899999
Q ss_pred EcCCC----------CEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEE
Q 001403 529 YSANG----------RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 598 (1084)
Q Consensus 529 ~s~d~----------~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 598 (1084)
|+|++ .++++++. ++.|++|| .+++....+.+|. ..|.+++|+|++++|++|+.||.|++||
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~---~~v~~~~~s~~g~~l~sgs~dg~v~iwd 241 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHE---SNVNHLSISPNGKYIATGGKDKKLLIWD 241 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred eccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCcc---ccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence 99987 78888876 67799999 4567777888887 8999999999999999999999999999
Q ss_pred CC-CCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeee--ecc-----------ccccceeEEEE
Q 001403 599 MN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAG-----------VLSDNLRKLSV 664 (1084)
Q Consensus 599 ~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~-----------~~~~~i~~~~~ 664 (1084)
+. .......+... ..|.+++|+|++.+++++ .|+.+++|++.+++... .+. +|...+.+++|
T Consensus 242 ~~~~~~~~~~~~~~---~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 317 (343)
T 2xzm_R 242 ILNLTYPQREFDAG---STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAW 317 (343)
T ss_dssp SSCCSSCSEEEECS---SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEE
T ss_pred CCCCcccceeecCC---CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEE
Confidence 94 44444444322 248999999999888765 56789999998765433 222 56667777777
Q ss_pred cCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceee
Q 001403 665 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 710 (1084)
Q Consensus 665 ~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~ 710 (1084)
+ |+++++++++.||+|++|++..+
T Consensus 318 s----------------------p~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 318 N----------------------ALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp C----------------------SSSCCEEEEETTSEEEEEEEEEE
T ss_pred C----------------------CCCCeEEEecCCceEEEEEEEcc
Confidence 6 67889999999999999998743
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-36 Score=347.17 Aligned_cols=272 Identities=7% Similarity=0.021 Sum_probs=209.1
Q ss_pred eeeecccCCCCceEEEEcCCC---------ceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQ---------HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 396 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg---------~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f 396 (1084)
+..++. +.+.|.+|+|+|++ ++||++..+ +. . ...
T Consensus 126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~---------~~----------------------~----~~~ 169 (524)
T 2j04_B 126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQ---------YM----------------------D----EPL 169 (524)
T ss_dssp CEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------
T ss_pred ceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEec---------cc----------------------C----Ccc
Confidence 333444 56799999999998 899997544 10 0 124
Q ss_pred cCCCCEEEEEeCCCEEEEEEccCCccccc-eeeeecccccEeEEEeecC------CCcEEEEEEeCCCcEEEEECCCCce
Q 001403 397 SPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAP------CKQISVITCGDDKTIKVWDAVTGSR 469 (1084)
Q Consensus 397 spdg~~las~~~dg~v~iwd~~~~~~~~~-~~~l~~h~~~V~~l~~s~d------~~~l~l~s~~~d~~i~vwd~~~g~~ 469 (1084)
+|+++.||+++.|++|+|||+.+++.... ...+.+|.+.|.+++|+|+ +. +|++++.|++|++||+.++..
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~DgtvrlWd~~~~~~ 247 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTINFLEIIDNAT 247 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCEEEEECCCCSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeEEEEEcCCCcc
Confidence 79999999999999999999998764321 1246678899999999997 45 899999999999999987642
Q ss_pred -----------eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCC-ceEeecCCCCeEEEE--EEcCCC-C
Q 001403 470 -----------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRM--AYSANG-R 534 (1084)
Q Consensus 470 -----------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~--~~s~d~-~ 534 (1084)
..++.+|...|.+++|++ + ..|++|+.||+|++||+++.. ....+..|...|.++ +|+|+| .
T Consensus 248 ~~~~~~~~~~p~~~l~~h~~~v~sv~~s~--~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~ 324 (524)
T 2j04_B 248 DVHVFKMCEKPSLTLSLADSLITTFDFLS--P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDT 324 (524)
T ss_dssp SSSEEECCCSCSEEECCTTTCEEEEEESS--S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCC
T ss_pred ccccceeecCceEEEEcCCCCEEEEEecC--C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCe
Confidence 247789999999999975 3 489999999999999998764 345678899999999 678888 8
Q ss_pred EEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCC
Q 001403 535 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 614 (1084)
Q Consensus 535 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 614 (1084)
+|++++. +++|++||+++++....+.+|. ....|.+++|+|+++.+++++.|++|++||++++.++..+..|..
T Consensus 325 ~laS~S~----D~tvklWD~~~~~~~~~~~~~~-~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~- 398 (524)
T 2j04_B 325 VVSTVAV----DGYFYIFNPKDIATTKTTVSRF-RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET- 398 (524)
T ss_dssp EEEEEET----TSEEEEECGGGHHHHCEEEEEC-SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS-
T ss_pred EEEEecc----CCeEEEEECCCCCccccccccc-ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC-
Confidence 9999986 7789999999988877777665 112478899999999999999999999999999988777776544
Q ss_pred CCcceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 615 PENPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 615 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
.|.+++|+|+|++|++|+.|++|++|+...
T Consensus 399 -~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 399 -TITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp -CEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred -ceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 699999999999999999999999999753
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-34 Score=364.52 Aligned_cols=502 Identities=11% Similarity=0.052 Sum_probs=364.5
Q ss_pred CccCCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCe-----
Q 001403 317 TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV----- 391 (1084)
Q Consensus 317 ~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V----- 391 (1084)
.++.++.....+.|.+|...|.+++|||||++||+++.+...+ ....|.+||+.++.. ..+.+|...+
T Consensus 35 l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~---~~~~i~~~d~~~g~~----~~lt~~~~~~~~~~~ 107 (1045)
T 1k32_A 35 LWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSL---NTADLYFYNGENGEI----KRITYFSGKSTGRRM 107 (1045)
T ss_dssp EEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTC---CEEEEEEEETTTTEE----EECCCCCEEEETTEE
T ss_pred EEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCC---CCCeEEEEECCCCCe----EEcccCCCccccccc
Confidence 3445555666788899999999999999999999976541111 126899999987652 2366788888
Q ss_pred --EEEEEcCCCCEEEEEeCC------CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC--------
Q 001403 392 --NRVVWSPDGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-------- 455 (1084)
Q Consensus 392 --~~v~fspdg~~las~~~d------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-------- 455 (1084)
..++|||||+++++++.+ ..|.+|++.+++.. .+..+ ....++|+| | ++++++.
T Consensus 108 ~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~----~l~~~--~~~~~~~sp-G---~l~~~~~~~~~~~~~ 177 (1045)
T 1k32_A 108 FTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV----PLNLG--PATHILFAD-G---RRVIGRNTFELPHWK 177 (1045)
T ss_dssp CSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE----ECCSC--SCSEEEEET-T---EEEEEESCSCCTTST
T ss_pred ccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeE----EecCC--CcceeeeCC-C---EEEEeccCCCccccc
Confidence 999999999977777644 35888888877532 23233 245678999 6 4666542
Q ss_pred ----CCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC-CceEeecCCCCeEEEEEEc
Q 001403 456 ----DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYS 530 (1084)
Q Consensus 456 ----d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s 530 (1084)
+....+|....+.....+.+|...+.++.|++ + .++++++.+|.+++|.++.. .....+..+. .+...+|+
T Consensus 178 ~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~--d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~S 253 (1045)
T 1k32_A 178 GYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG--H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLN 253 (1045)
T ss_dssp TCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET--T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEE
T ss_pred cccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC--C-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEc
Confidence 34566775444455566789999999999954 4 57778888999999987642 3334444433 35667999
Q ss_pred CCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccc--------cccCceEEEEEc-CCCCEEEEEECCCcEEEEECCC
Q 001403 531 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ--------LQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMNK 601 (1084)
Q Consensus 531 ~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--------~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~ 601 (1084)
|||+.++++. ++.|++||+...+.. .+.++. .+...+..++|+ |+|+++++++ ++.|++|+..+
T Consensus 254 pDG~~la~~~-----~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~ 326 (1045)
T 1k32_A 254 TDGRRILFSK-----GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG 326 (1045)
T ss_dssp ESSSCEEEEE-----TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred CCCCEEEEEe-----CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence 9999998874 556999999554443 444321 012368899999 9999999988 78999999988
Q ss_pred CeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEE-EEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCcee
Q 001403 602 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK-ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 680 (1084)
Q Consensus 602 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~ 680 (1084)
+.... +..+.. ..+..++|+ ||+.+++++.++.+. +|+..+++.....
T Consensus 327 ~~~~~-~~~~~~-~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~---------------------------- 375 (1045)
T 1k32_A 327 TYVLK-VPEPLR-IRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE---------------------------- 375 (1045)
T ss_dssp SBEEE-CSCCSC-EEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC----------------------------
T ss_pred CceEE-ccCCCc-ceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEec----------------------------
Confidence 87554 332211 147889999 999999999888888 8887755321110
Q ss_pred EecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCcc
Q 001403 681 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 760 (1084)
Q Consensus 681 ~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~ 760 (1084)
.+...+..++|+|||+.|++++.++.+++|++..+
T Consensus 376 -------------------------------------------~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg-- 410 (1045)
T 1k32_A 376 -------------------------------------------ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG-- 410 (1045)
T ss_dssp -------------------------------------------CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC--
T ss_pred -------------------------------------------CCccceeeeEECCCCCEEEEECCCCeEEEEECCCC--
Confidence 13456778999999999999999998888876543
Q ss_pred CcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CC----------eEEEEEcCCceeEE
Q 001403 761 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GG----------VISLYIVMTFKTIL 829 (1084)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg----------~i~vwd~~~~~~~~ 829 (1084)
....... +|...+.+++|||||++|++++ ++ .|++||+.+++ ..
T Consensus 411 --------------------~~~~~~~----~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~ 465 (1045)
T 1k32_A 411 --------------------KPTVIER----SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IF 465 (1045)
T ss_dssp --------------------CEEEEEE----CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EE
T ss_pred --------------------ceEEecc----CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EE
Confidence 2111111 2677789999999999998876 33 89999999887 67
Q ss_pred EEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce----------------------------------------
Q 001403 830 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---------------------------------------- 869 (1084)
Q Consensus 830 ~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~---------------------------------------- 869 (1084)
.+..|...+.+++|+| ||++|++++.++...+|+.....
T Consensus 466 ~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 544 (1045)
T 1k32_A 466 AATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 544 (1045)
T ss_dssp ECSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTT
T ss_pred EeeCCCcccCCceEcC-CCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccC
Confidence 7888888899999999 89999999987776666532211
Q ss_pred ---eeeeecccccCEEEEEEcCCCCEEEE-------------EeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceE
Q 001403 870 ---VISKLEGHSKRVTGLVFSDALNILVS-------------SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 933 (1084)
Q Consensus 870 ---~~~~l~~h~~~V~~l~~spd~~~l~s-------------~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 933 (1084)
.+..+..|.+.+..++|+|||+++++ .+.+..|.+||+.+++... +. . .+..
T Consensus 545 ~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~---l~-----~----~v~~ 612 (1045)
T 1k32_A 545 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE---VK-----N----NLTD 612 (1045)
T ss_dssp GGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE---EE-----E----EEEE
T ss_pred HhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEE---ee-----c----Ccce
Confidence 12334457788999999999988885 1235578889998876432 11 1 4778
Q ss_pred EEEccCCCEEEEEeCCeEEEEEcCCcc
Q 001403 934 IQFHKDQTRFLLVHETHLAIYEAEELT 960 (1084)
Q Consensus 934 ~~~s~dg~~la~~~d~~i~vwd~~~~~ 960 (1084)
++|||||++|+++.++.|++||+.+++
T Consensus 613 ~~~S~DG~~l~~~~~~~i~~~d~~~~~ 639 (1045)
T 1k32_A 613 LRLSADRKTVMVRKDDGKIYTFPLEKP 639 (1045)
T ss_dssp EEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred EEECCCCCEEEEEcCCcEEEEeCccCc
Confidence 999999999999888899999998877
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=352.42 Aligned_cols=296 Identities=18% Similarity=0.254 Sum_probs=253.5
Q ss_pred eeeecccCCCCceEEEEcCCC-ceeeeecccccCccccccceEEEEEcCCccccc--eeeeecCCCCCeEEEEEcCCCCE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQ-HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLF--KTALVRDPGVSVNRVVWSPDGSL 402 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg-~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~--~~~~~~~h~~~V~~v~fspdg~~ 402 (1084)
....|.+|++.|++++|+|++ ++||+++.| ++|+|||+.+..... ....+.+|...|.+++|+|+|++
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D---------~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~ 444 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRD---------KSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQF 444 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETT---------SEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCC---------CcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCE
Confidence 445789999999999999975 799999988 999999997654322 22347899999999999999999
Q ss_pred EEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe---ccCCCc
Q 001403 403 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---EGHGAP 479 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~---~~h~~~ 479 (1084)
|++|+.|++|+|||+.++...+ .+.+|...|.+++|+|+++ .|++|+.|++|++||.......... .+|...
T Consensus 445 l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~ 519 (694)
T 3dm0_A 445 ALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDW 519 (694)
T ss_dssp EEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSC
T ss_pred EEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCc
Confidence 9999999999999999986655 6789999999999999999 7999999999999997655433222 478999
Q ss_pred EEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE
Q 001403 480 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 559 (1084)
Q Consensus 480 v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~ 559 (1084)
|.+++|+++.....+++++.||+|++||+...+....+..|...|.+++|+|++++|++++. ++.|++||+.+++.
T Consensus 520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~~~~~ 595 (694)
T 3dm0_A 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLAEGKK 595 (694)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEETTTTEE
T ss_pred EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCce
Confidence 99999987655578999999999999999999888899999999999999999999999986 67799999999998
Q ss_pred eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCC-----------------CCCcceEEE
Q 001403 560 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----------------LPENPRICF 622 (1084)
Q Consensus 560 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~v~~ 622 (1084)
+..+..+ ..+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+.+++|
T Consensus 596 ~~~~~~~----~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 670 (694)
T 3dm0_A 596 LYSLEAN----SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW 670 (694)
T ss_dssp EECCBCS----SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEE
T ss_pred EEEecCC----CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEE
Confidence 8777654 4799999999998777765 56699999999998887754311 112578999
Q ss_pred ecCCCEEEEEECCCeEEEEEcC
Q 001403 623 NKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 623 s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
+|+|++|++|+.||.|++|++.
T Consensus 671 spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 671 SADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CTTSSEEEEEETTSEEEEEEC-
T ss_pred cCCCCEEEEEcCCCeEEEEecc
Confidence 9999999999999999999975
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-36 Score=347.78 Aligned_cols=350 Identities=10% Similarity=0.053 Sum_probs=239.1
Q ss_pred CCCCeEEEEEcCCC---------CEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCC
Q 001403 387 PGVSVNRVVWSPDG---------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 457 (1084)
Q Consensus 387 h~~~V~~v~fspdg---------~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~ 457 (1084)
+.+.|.+|+|+|++ ++||+++.++.. -..+|+++ ++++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 46799999999987 799999866420 01378888 799999999
Q ss_pred cEEEEECCCCcee----eEeccCCCcEEEEeeccc----CCCcEEEEEecCCeEEEEECCCCCc-----------eEeec
Q 001403 458 TIKVWDAVTGSRT----YSFEGHGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA-----------RVDYD 518 (1084)
Q Consensus 458 ~i~vwd~~~g~~~----~~~~~h~~~v~~~~~~~~----~~~~~l~s~s~dg~i~iwd~~~~~~-----------~~~~~ 518 (1084)
+|+|||+.+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887653 456778899999999886 3467999999999999999986542 23567
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCce-EeeeeeccccccCceEEE--EEcCCC-CEEEEEECCCcE
Q 001403 519 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVV--HFDTAK-DQILAAGDDHVI 594 (1084)
Q Consensus 519 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~~~v~~~--~~s~~~-~~l~~~~~dg~i 594 (1084)
.+...|.+++|++++ .|++++. ++.|++||++++. ....+.+|. ..|.++ +|+|++ .+|++++.|++|
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~---~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHD---SYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSS---SCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeeccc---ccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 788899999999865 7888875 7789999999764 445677887 899999 578887 899999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeee
Q 001403 595 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 674 (1084)
Q Consensus 595 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~ 674 (1084)
++||+++++....+..+.....|.+++|+|+++.+++++.|++|++||+.++.++..+.+
T Consensus 336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g-------------------- 395 (524)
T 2j04_B 336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS-------------------- 395 (524)
T ss_dssp EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE--------------------
T ss_pred EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec--------------------
Confidence 999999887766655443322478999999999999999999999999887644333221
Q ss_pred ccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEee
Q 001403 675 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 754 (1084)
Q Consensus 675 ~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~ 754 (1084)
|.+.|.+++|+|+|+.|++++.||+|++|+
T Consensus 396 --------------------------------------------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 396 --------------------------------------------------RETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp --------------------------------------------------CSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred --------------------------------------------------CCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 445666677777777777777777777665
Q ss_pred ccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCC
Q 001403 755 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP 834 (1084)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~ 834 (1084)
.... + +. .+... .. ..+
T Consensus 426 ~~~~------------------------~----~~--~~~~~--------------------------------~~-~~~ 442 (524)
T 2j04_B 426 AARR------------------------L----LH--GIKNS--------------------------------SA-TQK 442 (524)
T ss_dssp SCSS------------------------T----TT--CC---------------------------------------CC
T ss_pred chHh------------------------h----cc--ccccC--------------------------------cc-cee
Confidence 3210 0 00 00000 00 001
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcC-CceeeeeecccccCEEEEEEcCCCC---EEEEEeCCCcEEEEeCCC
Q 001403 835 SPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVISKLEGHSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 835 ~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~-~~~~~~~l~~h~~~V~~l~~spd~~---~l~s~s~dg~I~iwd~~~ 909 (1084)
...+.+++|+| ++..+. ... .+.+|+.. ++.++..+.+|...|.+++|+|++. ++|+|+.||+|+||++..
T Consensus 443 ~~~v~~v~~sp-~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 443 SLRLWKWDYSI-KDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCEEEECBCCS-SSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred eeEEEEeccCC-CCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 22456788999 676542 222 23444433 5777888999999999999999964 999999999999999986
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=325.64 Aligned_cols=328 Identities=16% Similarity=0.219 Sum_probs=281.0
Q ss_pred eeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 405 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 405 (1084)
..+.+.+|.+.|.. +++++|++||+|+.| ++|+|||+.++..... +.+|...|.+++|+ +++|++
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~d---------g~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~--~~~l~s 174 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDD---------NTLKVWSAVTGKCLRT---LVGHTGGVWSSQMR--DNIIIS 174 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETT---------SCEEEEETTTCCEEEE---CCCCSSCEEEEEEE--TTEEEE
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECC---------CcEEEEECCCCcEEEE---EcCCCCCEEEEEec--CCEEEE
Confidence 34678999988754 477789999999888 9999999988765433 67899999999998 679999
Q ss_pred EeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEee
Q 001403 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 485 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~ 485 (1084)
|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++||+.+++.+..+.+|...|.++++
T Consensus 175 ~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 247 (445)
T 2ovr_B 175 GSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247 (445)
T ss_dssp EETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE
T ss_pred EeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE
Confidence 9999999999999987655 678999999999996 44 7999999999999999999999999999999999998
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeec
Q 001403 486 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 565 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 565 (1084)
++.++++++.||.|++||+++.+....+..+...+.+++| ++.++++++. ++.|++||+.+++.+..+.+
T Consensus 248 ----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~ 317 (445)
T 2ovr_B 248 ----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETGNCIHTLTG 317 (445)
T ss_dssp ----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTCCEEEEECC
T ss_pred ----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCCCEEEEEcC
Confidence 5578999999999999999998888889999999999999 8899999986 66799999999999999988
Q ss_pred cccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCC-CCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 566 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 566 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
|. ..+.++.+ +++++++++.||.|++||+.+++.+..+..+. +...|.+++|+ ++++++++.||.|++||+.
T Consensus 318 ~~---~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 318 HQ---SLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp CC---SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred Cc---ccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECC
Confidence 87 77887777 46799999999999999999999999987632 34468888885 6899999999999999999
Q ss_pred CCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCcc
Q 001403 645 ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 724 (1084)
Q Consensus 645 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 724 (1084)
+++.+..+... ....
T Consensus 391 ~~~~~~~~~~~-----------------------------------------------------------------~~~~ 405 (445)
T 2ovr_B 391 TGEFIRNLVTL-----------------------------------------------------------------ESGG 405 (445)
T ss_dssp TCCEEEEEEEC-----------------------------------------------------------------TTGG
T ss_pred CCceeeeeecc-----------------------------------------------------------------ccCC
Confidence 88766544210 0012
Q ss_pred ccceEEEEEEecCCCeEEEeecCCc----eEEeeccC
Q 001403 725 KANKISRLTYNNGGQAIFALASNGV----HLMWRWPR 757 (1084)
Q Consensus 725 ~~~~i~~l~~s~~g~~l~~~~~dg~----i~vw~~~~ 757 (1084)
+...|.+++|+|++..+++++.||. +.+||+..
T Consensus 406 ~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 406 SGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp GTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 5678899999999999999999987 88888754
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=323.94 Aligned_cols=319 Identities=18% Similarity=0.280 Sum_probs=271.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
+.+|...|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+ +. ++++|+.|++|++||
T Consensus 114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN 185 (445)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence 6789887543 355679999999999999999999987655 678999999999998 44 799999999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 464 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
+.+++.+..+.+|...|.++.++ +..+++++.||.|++||+.+++....+..+...+.++++ +++++++++.
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-- 257 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-- 257 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred CCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence 99999999999999999999983 358999999999999999999998899999999999998 7888999876
Q ss_pred CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEe
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 623 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 623 (1084)
++.|++||+.+++.+..+.+|. ..+.++.| ++.++++++.||.|++||+.+++.+..+..+.. .+.++.+
T Consensus 258 --dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~- 327 (445)
T 2ovr_B 258 --DFMVKVWDPETETCLHTLQGHT---NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL- 327 (445)
T ss_dssp --TSCEEEEEGGGTEEEEEECCCS---SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE-
T ss_pred --CCEEEEEECCCCcEeEEecCCC---CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE-
Confidence 6679999999999999998887 88999999 788999999999999999999999998876544 4555555
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccc
Q 001403 624 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 703 (1084)
Q Consensus 624 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 703 (1084)
+++++++++.||.|++||+.+++.+..+..+
T Consensus 328 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------------------------------------ 358 (445)
T 2ovr_B 328 -KDNILVSGNADSTVKIWDIKTGQCLQTLQGP------------------------------------------------ 358 (445)
T ss_dssp -ETTEEEEEETTSCEEEEETTTCCEEEEECST------------------------------------------------
T ss_pred -eCCEEEEEeCCCeEEEEECCCCcEEEEEccC------------------------------------------------
Confidence 5779999999999999998866443322110
Q ss_pred cccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCcc
Q 001403 704 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 783 (1084)
Q Consensus 704 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1084)
T Consensus 359 -------------------------------------------------------------------------------- 358 (445)
T 2ovr_B 359 -------------------------------------------------------------------------------- 358 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEE-----cCCCCCeEEEEEcCCCCcEEEEEeCC
Q 001403 784 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDD 857 (1084)
Q Consensus 784 ~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~la~g~~d 857 (1084)
..|...|.+++++ +.++++++ ||.|++||+.+++.+..+ .++.+.|.+++|+| ++.++|+|+.|
T Consensus 359 -------~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~d 428 (445)
T 2ovr_B 359 -------NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRN 428 (445)
T ss_dssp -------TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSS
T ss_pred -------CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccC
Confidence 0155567777774 56788777 788999999999888887 46778999999999 89999999999
Q ss_pred Ce----EEEEEcCC
Q 001403 858 ST----ILIYNARS 867 (1084)
Q Consensus 858 g~----i~iwd~~~ 867 (1084)
|+ |.+||+..
T Consensus 429 g~~~~~l~v~df~~ 442 (445)
T 2ovr_B 429 GTEETKLLVLDFDV 442 (445)
T ss_dssp SSSCCEEEEEECCC
T ss_pred CCCccEEEEEECCC
Confidence 97 99999874
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=325.99 Aligned_cols=320 Identities=18% Similarity=0.261 Sum_probs=271.4
Q ss_pred eecCCCCCe-EEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEE
Q 001403 383 LVRDPGVSV-NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 461 (1084)
Q Consensus 383 ~~~~h~~~V-~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~v 461 (1084)
.+.+|...| .++.| ++++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|++ .+++|+.|++|++
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~v 187 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 187 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEE
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEE
Confidence 477898875 55555 57899999999999999999987655 778999999999999887 5899999999999
Q ss_pred EECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc-----------------------eEeec
Q 001403 462 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-----------------------RVDYD 518 (1084)
Q Consensus 462 wd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-----------------------~~~~~ 518 (1084)
||+++++.+..+.+|...|.+++|.+.+++.++++++.||.|++||+..... ...+.
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 9999999999999999999999998878889999999999999999987653 23455
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEE
Q 001403 519 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 598 (1084)
Q Consensus 519 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 598 (1084)
.+...+.++ +++++++++++. ++.|++||+.+++.+..+.+|. ..|.+++|+|+++++++|+.||.|++||
T Consensus 268 ~~~~~v~~~--~~~~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~sg~~dg~i~vwd 338 (464)
T 3v7d_B 268 GHMASVRTV--SGHGNIVVSGSY----DNTLIVWDVAQMKCLYILSGHT---DRIYSTIYDHERKRCISASMDTTIRIWD 338 (464)
T ss_dssp CCSSCEEEE--EEETTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CccceEEEE--cCCCCEEEEEeC----CCeEEEEECCCCcEEEEecCCC---CCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 566666665 688999999986 6679999999999999999888 8999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCc
Q 001403 599 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 678 (1084)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~ 678 (1084)
+.+++.+..+..+.. .|.+++|+ +.++++++.||.|++||+.+.......
T Consensus 339 ~~~~~~~~~~~~h~~--~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-------------------------- 388 (464)
T 3v7d_B 339 LENGELMYTLQGHTA--LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-------------------------- 388 (464)
T ss_dssp TTTTEEEEEECCCSS--CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE--------------------------
T ss_pred CCCCcEEEEEeCCCC--cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee--------------------------
Confidence 999999999986644 58888887 579999999999999998754211000
Q ss_pred eeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCC
Q 001403 679 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 758 (1084)
Q Consensus 679 ~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~ 758 (1084)
T Consensus 389 -------------------------------------------------------------------------------- 388 (464)
T 3v7d_B 389 -------------------------------------------------------------------------------- 388 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEE-EcCCCCC
Q 001403 759 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT-IMPPSPT 837 (1084)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~-~~~~~~~ 837 (1084)
.+...+..++|++++++++++++|.|++||+.+++.+.. +..|...
T Consensus 389 ---------------------------------~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~ 435 (464)
T 3v7d_B 389 ---------------------------------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQ 435 (464)
T ss_dssp ---------------------------------ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSE
T ss_pred ---------------------------------cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCc
Confidence 033445677889999999999999999999999999886 6678899
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 001403 838 ATSLAFNPHDNNVIAIGMDDSTILIYN 864 (1084)
Q Consensus 838 i~~l~~s~~d~~~la~g~~dg~i~iwd 864 (1084)
|.+++|+ ++.++++++.||.+.+|-
T Consensus 436 v~~v~~~--~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 436 IWSVNFK--GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEEEEEE--TTEEEEEEEETTEEEEEE
T ss_pred EEEEEec--CCEEEEEEEeCCeEEEEE
Confidence 9999997 466777788888766654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=324.22 Aligned_cols=298 Identities=13% Similarity=0.111 Sum_probs=247.9
Q ss_pred cceeeecccCCCCceEEEEcCCC-ceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC-CCC
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQ-HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGS 401 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg-~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp-dg~ 401 (1084)
....+.+.+|.+.|.+++|+|+| ++||+++.| +.|+|||+.+....... ...+|...|.+++|+| +++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~ 132 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKG---------GDIILWDYDVQNKTSFI-QGMGPGDAITGMKFNQFNTN 132 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBT---------SCEEEEETTSTTCEEEE-CCCSTTCBEEEEEEETTEEE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCC---------CeEEEEeCCCcccceee-ecCCcCCceeEEEeCCCCCC
Confidence 35567889999999999999999 999999888 99999999876654332 1347999999999999 789
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEE
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 481 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~ 481 (1084)
+|++++.|+.|++||+.+. .+.......+|...|.+++|+|+++ ++++++.|+.|++||+ +++.+..+.+|...|.
T Consensus 133 ~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~ 208 (383)
T 3ei3_B 133 QLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVT 208 (383)
T ss_dssp EEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEEECSSSCEE
T ss_pred EEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEeccCCCcEE
Confidence 9999999999999999963 3333323344558899999999999 8999999999999998 6888999999999999
Q ss_pred EEeecccCCCc-EEEEEecCCeEEEEECCC----CCceEeecCCCCeEEEEEEcC-CCCEEEEEeeCCCCCeeEEEecCC
Q 001403 482 SLCPHAKENIH-FIFSISVDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNES 555 (1084)
Q Consensus 482 ~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~~wd~~ 555 (1084)
+++|++ ++. ++++++.||.|++||+.+ ......+ .+...+.+++|+| ++++|++++. ++.|++||+.
T Consensus 209 ~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~~i~iwd~~ 281 (383)
T 3ei3_B 209 HAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RNEIRVYSSY 281 (383)
T ss_dssp EEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SSEEEEEETT
T ss_pred EEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CCcEEEEECC
Confidence 999965 556 999999999999999987 3344444 5788999999999 9999999986 6779999999
Q ss_pred CceEeeeeeccccc--------------cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEE
Q 001403 556 EGAIKRTYQGLQLQ--------------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 621 (1084)
Q Consensus 556 ~~~~~~~~~~~~~~--------------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 621 (1084)
+++....+.+|... ...+..++|+|++++ +++.||.|++||+.+++.+..+..+.+...+..++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~ 359 (383)
T 3ei3_B 282 DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNK 359 (383)
T ss_dssp BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEE
T ss_pred CCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEE
Confidence 98887777655311 133445666777666 77799999999999999999998765555677889
Q ss_pred EecCCCEEEEEECCCeEEEEEcCC
Q 001403 622 FNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 622 ~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
|+|++++|++++ |+.|++|++.+
T Consensus 360 ~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 360 FSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EecCccEEEEec-CCcEEEEecCC
Confidence 999999999997 89999999874
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=327.05 Aligned_cols=305 Identities=18% Similarity=0.230 Sum_probs=265.1
Q ss_pred ceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEE
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 404 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la 404 (1084)
....++.+|.+.|.. ++++++++||+|+.| ++|++||+.++..... +.+|...|.+++|+|++ +|+
T Consensus 112 ~~~~~l~~h~~~v~~-~~~~~~~~l~sgs~d---------g~i~vwd~~~~~~~~~---~~~h~~~V~~l~~~~~~-~l~ 177 (464)
T 3v7d_B 112 PQRTTLRGHMTSVIT-CLQFEDNYVITGADD---------KMIRVYDSINKKFLLQ---LSGHDGGVWALKYAHGG-ILV 177 (464)
T ss_dssp CEEEEEECCSSSCEE-EEEEETTEEEEEETT---------SCEEEEETTTTEEEEE---ECCCSSCEEEEEECSTT-EEE
T ss_pred cceEEEcCCCCCcEE-EEEECCCEEEEEcCC---------CcEEEEECCCCcEEEE---EeCCCcCEEEEEEcCCC-EEE
Confidence 345678999988643 344477899999888 9999999988765433 67899999999999998 999
Q ss_pred EEeCCCEEEEEEccCCccccceeeeecccccEeEEEeec--CCCcEEEEEEeCCCcEEEEECCCCce-------------
Q 001403 405 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSR------------- 469 (1084)
Q Consensus 405 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~--d~~~l~l~s~~~d~~i~vwd~~~g~~------------- 469 (1084)
+|+.||+|++||+.+++.+. .+.+|.+.|.+++|++ ++. ++++|+.|++|++||+.++..
T Consensus 178 s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 252 (464)
T 3v7d_B 178 SGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252 (464)
T ss_dssp EEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------CCSSEE
T ss_pred EEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCcccccccccCCcceE
Confidence 99999999999999987555 7789999999999995 556 899999999999999987753
Q ss_pred ----------eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEE
Q 001403 470 ----------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 539 (1084)
Q Consensus 470 ----------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 539 (1084)
+..+.+|...|.++.. ++.++++++.||.|++||+.+.+....+..+...+.+++|+|++++++++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg 328 (464)
T 3v7d_B 253 FHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA 328 (464)
T ss_dssp ESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred eeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEE
Confidence 4567889999998854 55799999999999999999998888999999999999999999999999
Q ss_pred eeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcce
Q 001403 540 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 619 (1084)
Q Consensus 540 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 619 (1084)
+. ++.|++||+.+++.+..+.+|. ..|.+++|+ ++++++++.||.|++||+.++......... ..+..
T Consensus 329 ~~----dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~---~~~~~ 396 (464)
T 3v7d_B 329 SM----DTTIRIWDLENGELMYTLQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT---NLSAI 396 (464)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT---TCCCE
T ss_pred eC----CCcEEEEECCCCcEEEEEeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC---CCccE
Confidence 86 6679999999999999999988 899999997 579999999999999999998877666432 24678
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCCeeee-ccccccceeEEEEc
Q 001403 620 ICFNKNGTLLAVIANENRIKILETPESNSVDA-AGVLSDNLRKLSVN 665 (1084)
Q Consensus 620 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~ 665 (1084)
++|+++++++++++ ||.|++||+.+++.+.. ...+...|.+++++
T Consensus 397 ~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 397 TTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp EEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred EEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence 89999999999998 89999999999998875 67788888888886
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=310.71 Aligned_cols=315 Identities=21% Similarity=0.297 Sum_probs=253.0
Q ss_pred EEEEEcCCccccceeeeecCCCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEccCCccc--cceeeeecccccEeEEEeec
Q 001403 367 FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSA 443 (1084)
Q Consensus 367 v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd-g~~las~~~dg~v~iwd~~~~~~~--~~~~~l~~h~~~V~~l~~s~ 443 (1084)
+.++...+....+. ..|.||.+.|++|+|+|+ +++||+|+.|++|+|||+.+++.. .....+.+|...|.+++|+|
T Consensus 18 ~~~~~~~~~~~~l~-~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~ 96 (340)
T 4aow_A 18 LYFQSMMTEQMTLR-GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 96 (340)
T ss_dssp --------CEEEEE-EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT
T ss_pred EEEEEccCCceEEE-EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC
Confidence 44444433333332 348999999999999997 689999999999999999876542 23346789999999999999
Q ss_pred CCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCce-EeecCCCC
Q 001403 444 PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGL 522 (1084)
Q Consensus 444 d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~ 522 (1084)
+++ +|++++.|+.|++|+...+........+...+..+.+.+ ++.++++++.|+.+++||+...... .....+..
T Consensus 97 dg~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~ 172 (340)
T 4aow_A 97 DGQ--FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 172 (340)
T ss_dssp TSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSS
T ss_pred CCC--EEEEEcccccceEEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccC
Confidence 999 899999999999999999999888888999998888854 5679999999999999998765443 34556777
Q ss_pred eEEEEEEcCCC--CEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 001403 523 GCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 600 (1084)
Q Consensus 523 ~i~~~~~s~d~--~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 600 (1084)
.+..++|++++ .++++++. ++.|++||+.+++.+..+.+|. ..|.+++|+|++++|++|+.||.|++||+.
T Consensus 173 ~v~~~~~~~~~~~~~~~s~~~----d~~i~i~d~~~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~ 245 (340)
T 4aow_A 173 WVSCVRFSPNSSNPIIVSCGW----DKLVKVWNLANCKLKTNHIGHT---GYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245 (340)
T ss_dssp CEEEEEECSCSSSCEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred cccceEEccCCCCcEEEEEcC----CCEEEEEECCCCceeeEecCCC---CcEEEEEECCCCCEEEEEeCCCeEEEEEec
Confidence 89999998875 45666664 6679999999999999999988 899999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCcee
Q 001403 601 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 680 (1084)
Q Consensus 601 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~ 680 (1084)
+++.+..+..+. .+.+++|+|++.++ +++.|+.|++||+.++..+..+..+...
T Consensus 246 ~~~~~~~~~~~~---~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------------------- 299 (340)
T 4aow_A 246 EGKHLYTLDGGD---IINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVIS---------------------- 299 (340)
T ss_dssp TTEEEEEEECSS---CEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------------------------
T ss_pred cCceeeeecCCc---eEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEecccccee----------------------
Confidence 999999887654 48999999988655 5556899999999887655544321100
Q ss_pred EecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCC
Q 001403 681 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 758 (1084)
Q Consensus 681 ~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~ 758 (1084)
.....|...|.+++|+|+|++|++++.||.|++|++..+
T Consensus 300 ---------------------------------------~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 300 ---------------------------------------TSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp -------------------------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred ---------------------------------------eeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 001237788999999999999999999999999997654
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-34 Score=324.04 Aligned_cols=298 Identities=12% Similarity=0.105 Sum_probs=256.7
Q ss_pred ceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcc----ccceeeeecCCCCCeEEEEEcCC-
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACS----MLFKTALVRDPGVSVNRVVWSPD- 399 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~----~~~~~~~~~~h~~~V~~v~fspd- 399 (1084)
...+++.+|.+.|.+++|+| ++||+++.| ++|+|||+.+.. ... ...+.+|...|.+++|+|+
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~d---------g~i~iw~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~ 74 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGD---------GYLKVWDNKLLDNENPKDK-SYSHFVHKSGLHHVDVLQAI 74 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETT---------SEEEEEESBCCTTCCGGGG-EEEEECCTTCEEEEEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCC---------CEEEEEECCCcccccCCCc-ceEEecCCCcEEEEEEeccc
Confidence 45678899999999999999 899999888 999999998766 111 1236689999999999999
Q ss_pred ---C---CEEEEEeCCCEEEEEEccCCccccc--eeeeecc-----cccEeEEEee----cCCCcEE-EEEEeCCCcEEE
Q 001403 400 ---G---SLLGVAYSKHIVQLYAYHGGSDARQ--QLEIDAH-----VGNVNDLAFS----APCKQIS-VITCGDDKTIKV 461 (1084)
Q Consensus 400 ---g---~~las~~~dg~v~iwd~~~~~~~~~--~~~l~~h-----~~~V~~l~~s----~d~~~l~-l~s~~~d~~i~v 461 (1084)
| ++|++++.|+.|++||+.+++.... ...+..| ...|.+++|+ |+++ + +++++.|+.|++
T Consensus 75 ~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg~i~i 152 (397)
T 1sq9_A 75 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKGTTYI 152 (397)
T ss_dssp ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTSCEEE
T ss_pred ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCCcEEE
Confidence 9 9999999999999999998875100 2366778 5899999999 9999 8 999999999999
Q ss_pred EECCC------Cceee-----Eec-------cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecC---C
Q 001403 462 WDAVT------GSRTY-----SFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---P 520 (1084)
Q Consensus 462 wd~~~------g~~~~-----~~~-------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~ 520 (1084)
||+.+ ++.+. .+. .|...|.+++|++ ++ ++++++.||.|++||+++.+....+.. +
T Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h 229 (397)
T 1sq9_A 153 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 229 (397)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC--
T ss_pred EeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccc
Confidence 99998 77776 774 4899999999955 66 999999999999999999888888887 7
Q ss_pred ---CCeEEEEEEcCCCCEEEEEeeCCCCC---eeEEEecCCCceEeeeeec-------------cccccCceEEEEEcCC
Q 001403 521 ---GLGCTRMAYSANGRRLFSCGTSKEGE---SFLVEWNESEGAIKRTYQG-------------LQLQHNSVSVVHFDTA 581 (1084)
Q Consensus 521 ---~~~i~~~~~s~d~~~l~~~~~~~~~~---~~i~~wd~~~~~~~~~~~~-------------~~~~~~~v~~~~~s~~ 581 (1084)
...+.+++|+|++++|++++. + +.|++||+.+++.+..+.+ |. ..|.+++|+|+
T Consensus 230 ~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~ 302 (397)
T 1sq9_A 230 INNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---SWVMSLSFNDS 302 (397)
T ss_dssp -CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBS---SCEEEEEECSS
T ss_pred cccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccC---CcEEEEEECCC
Confidence 889999999999999999986 5 7899999999999999988 66 89999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCeEEEEEc------CC-------------CCCCCcceEEEecCC----------CEEEEE
Q 001403 582 KDQILAAGDDHVIKIWDMNKVQLLTTID------AG-------------GGLPENPRICFNKNG----------TLLAVI 632 (1084)
Q Consensus 582 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~s~~~----------~~l~~~ 632 (1084)
+++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++|+++
T Consensus 303 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~ 382 (397)
T 1sq9_A 303 GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCV 382 (397)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEe
Confidence 9999999999999999999999999988 43 003469999999998 799999
Q ss_pred ECCCeEEEEEcCCC
Q 001403 633 ANENRIKILETPES 646 (1084)
Q Consensus 633 ~~dg~i~iwd~~~~ 646 (1084)
+.||.|++|++.++
T Consensus 383 ~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 383 CLDRSIRWFREAGG 396 (397)
T ss_dssp ETTTEEEEEEEEC-
T ss_pred cCCCcEEEEEcCCC
Confidence 99999999998865
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=314.30 Aligned_cols=292 Identities=12% Similarity=0.078 Sum_probs=257.9
Q ss_pred eeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 405 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 405 (1084)
....|.+|.+.|.+++|+|||++||++..| +.|+|||+.++.... .+.+|...|.+++|+|++++|++
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~d---------g~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s 91 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKD---------SSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTKYCVT 91 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESS---------SCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSSEEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCC---------CEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCCEEEE
Confidence 445688999999999999999999999888 999999998876543 37789999999999999999999
Q ss_pred EeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC-----CcEEEEECCCCc-----------e
Q 001403 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGS-----------R 469 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d-----~~i~vwd~~~g~-----------~ 469 (1084)
++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+.++. .
T Consensus 92 ~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~ 165 (369)
T 3zwl_B 92 GSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP 165 (369)
T ss_dssp EETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred EeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeecccccce
Confidence 9999999999999987665 344 888999999999999 78888888 999999988664 3
Q ss_pred eeEeccCCC--cEEEEeecccCCCcEEEEEecCCeEEEEECCC-CCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001403 470 TYSFEGHGA--PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 546 (1084)
Q Consensus 470 ~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 546 (1084)
+..+..|.. .+.+++|++ ++.++++++.||.|++||+.+ ......+..+...+.+++|+|++++|++++. +
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d 239 (369)
T 3zwl_B 166 IHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR----D 239 (369)
T ss_dssp SEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET----T
T ss_pred eeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC----C
Confidence 455566666 899999965 668999999999999999998 5667778888999999999999999999975 6
Q ss_pred eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCC--------------cEEEEECCCCeEEEEEcCCC
Q 001403 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------------VIKIWDMNKVQLLTTIDAGG 612 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~ 612 (1084)
+.|++||+.+++.+..+.. . ..+..++|+|+++++++++.++ .+++||..+++.+..+..+.
T Consensus 240 ~~i~v~d~~~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 315 (369)
T 3zwl_B 240 TNSFLVDVSTLQVLKKYET-D---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF 315 (369)
T ss_dssp SEEEEEETTTCCEEEEEEC-S---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCS
T ss_pred ceEEEEECCCCceeeeecC-C---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheeccc
Confidence 6799999999999888873 3 6899999999999999999888 89999999999999998665
Q ss_pred CCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCC
Q 001403 613 GLPENPRICFNKNGTLLAVIANENRIKILETPESN 647 (1084)
Q Consensus 613 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 647 (1084)
. .|.+++|+|++++|++++.||.|++|++..+.
T Consensus 316 ~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 316 G--PLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp S--CEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred C--cEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 4 69999999999999999999999999998653
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=327.46 Aligned_cols=294 Identities=12% Similarity=0.176 Sum_probs=224.8
Q ss_pred CCCCCCcchhhhcccccCCCccCCCccceeeec-ccCCCCceEEEEcC-CCceeeeecccccCccccccceEEEEEcCC-
Q 001403 298 PDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTL-IEGSSSPMSMDFHP-VQHTLLLGLWDVNSGQKLFIRNFKVWDIGA- 374 (1084)
Q Consensus 298 ~~fsP~~s~~~~~f~~~~~~~~~~~p~~~~~~l-~~h~~~V~~v~~sp-dg~~las~~~d~~sg~~~~~~~v~iwd~~~- 374 (1084)
..|+|++..+..... ++.....+..+ .+|.+.|.+++|+| ||++||+++.| ++|+|||+.+
T Consensus 33 ~~f~~~~~~~~~~~~-------w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~d---------g~v~vwd~~~~ 96 (437)
T 3gre_A 33 KEFGPIQEIVRSPNM-------GNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQ---------GVIKIWNLKEI 96 (437)
T ss_dssp GGGCCCCCCCCCCCG-------GGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETT---------SEEEEEEHHHH
T ss_pred hhcCCcccccccccc-------ccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCC---------ceEEEeECccc
Confidence 356777666544331 23345677778 89999999999999 99999999988 9999999976
Q ss_pred --ccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEcc---CCccccceeeeecccccEeEEEeecCCCcEE
Q 001403 375 --CSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH---GGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449 (1084)
Q Consensus 375 --~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~---~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~ 449 (1084)
... .......+|...|.+++|+|++++|++++.||+|++||+. +++... .+.+| .|..+.|+|++
T Consensus 97 ~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~--~i~~~~~~~~~---- 166 (437)
T 3gre_A 97 IVGEV-YSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK---FLNCE--CIRKINLKNFG---- 166 (437)
T ss_dssp HTTCC-CSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE---EEEEE--EEEEEEGGGGS----
T ss_pred ccCcc-cceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee---ccccc--eeEEEEccCcc----
Confidence 321 1111122599999999999999999999999999999995 554333 34444 67777777643
Q ss_pred EEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecC--CCCeEEEE
Q 001403 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRM 527 (1084)
Q Consensus 450 l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~ 527 (1084)
+...+.++.+...+++.++++++.||.|++||+++.+....+.. +...|.++
T Consensus 167 --------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~ 220 (437)
T 3gre_A 167 --------------------------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSI 220 (437)
T ss_dssp --------------------------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEE
T ss_pred --------------------------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEE
Confidence 23334445544466788999999999999999999998888877 67899999
Q ss_pred EEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeee-ccccccCceEEEEEc----CCCCEEEEEECCCcEEEEECCCC
Q 001403 528 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD----TAKDQILAAGDDHVIKIWDMNKV 602 (1084)
Q Consensus 528 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~~~v~~~~~s----~~~~~l~~~~~dg~i~iwd~~~~ 602 (1084)
+|+|++++|++++. ++.|++||+++++.+..+. .+. ..|.+++|+ |++.++++++.||.|++||+.++
T Consensus 221 ~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 293 (437)
T 3gre_A 221 CIDEECCVLILGTT----RGIIDIWDIRFNVLIRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG 293 (437)
T ss_dssp EECTTSCEEEEEET----TSCEEEEETTTTEEEEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT
T ss_pred EECCCCCEEEEEcC----CCeEEEEEcCCccEEEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC
Confidence 99999999999986 6679999999999988876 555 689999555 56779999999999999999999
Q ss_pred eEEEEEcCCCC------------------------CCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeee
Q 001403 603 QLLTTIDAGGG------------------------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA 651 (1084)
Q Consensus 603 ~~~~~~~~~~~------------------------~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 651 (1084)
+.+..+..+.. ...|.+++|+ ++++|++++.|+.|++||+.+++....
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 294 HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence 99988875532 2235566666 556666666666666666665544433
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=306.03 Aligned_cols=293 Identities=20% Similarity=0.259 Sum_probs=255.2
Q ss_pred cceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
....+++.+|.+.|.+++| |++++||+++.| +.|+|||+.+...... +..|...|.+++|+|++++|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~d---------g~v~vw~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l 74 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRD---------GTVRLWSKDDQWLGTV---VYTGQGFLNSVCYDSEKELL 74 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETT---------SEEEEEEESSSEEEEE---EEECSSCEEEEEEETTTTEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcC---------CcEEEEECCCCEEEEE---eecCCccEEEEEECCCCCEE
Confidence 3567889999999999999 999999999888 9999999977654432 56689999999999999999
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEE
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 483 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~ 483 (1084)
++++.|+.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..|...+.++
T Consensus 75 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~ 148 (313)
T 3odt_A 75 LFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDA 148 (313)
T ss_dssp EEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEE
T ss_pred EEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEecccCCCceeEE
Confidence 99999999999999876555555578899999999999 456 799999999999999 788888999999999999
Q ss_pred eecccCCCcEEEEEecCCeEEEEECCCCCceEeecC-CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee
Q 001403 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 484 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 562 (1084)
++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||+.+++.+..
T Consensus 149 ~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~~~~~~~~~ 220 (313)
T 3odt_A 149 KVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDMHTGDVLRT 220 (313)
T ss_dssp EEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEETTTCCEEEE
T ss_pred EEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEECCchhhhhh
Confidence 99763 457999999999999999 3345555555 778999999999999 777764 67799999999999999
Q ss_pred eeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEE
Q 001403 563 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 563 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
+.+|. ..|.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .+.+++|+|+++ +++++.||.|++|+
T Consensus 221 ~~~~~---~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 221 YEGHE---SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp EECCS---SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred hhcCC---ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 99888 899999999999 689999999999999999999999987654 699999999998 66789999999999
Q ss_pred cCCCCeee
Q 001403 643 TPESNSVD 650 (1084)
Q Consensus 643 ~~~~~~~~ 650 (1084)
+.+++...
T Consensus 294 ~~~~~~~~ 301 (313)
T 3odt_A 294 QEKSRWAS 301 (313)
T ss_dssp SCGGGCCC
T ss_pred CCCCceee
Confidence 99875543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=316.43 Aligned_cols=299 Identities=11% Similarity=0.190 Sum_probs=245.5
Q ss_pred ccceeeecccCCCCceEEEEcCCCc-eeeeecc---cccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC
Q 001403 323 PKTVAQTLIEGSSSPMSMDFHPVQH-TLLLGLW---DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 398 (1084)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~-~las~~~---d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp 398 (1084)
|......+.+|.+.|.+++|+|+|. +++++++ | +.|+|||+.++...... ..+|...|.+++|+|
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d---------~~v~iw~~~~~~~~~~~--~~~~~~~v~~~~~~~ 75 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGT---------GVIQLYEIQHGDLKLLR--EIEKAKPIKCGTFGA 75 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCC---------EEEEEEEECSSSEEEEE--EEEESSCEEEEECTT
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCC---------cEEEEEeCCCCccccee--eecccCcEEEEEEcC
Confidence 3445566789999999999999995 5556665 5 99999999986654332 336899999999999
Q ss_pred C---CCEEEEEeCCCEEEEEEccCCc-cccceeeeecccccEeEEE------eecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 399 D---GSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLA------FSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 399 d---g~~las~~~dg~v~iwd~~~~~-~~~~~~~l~~h~~~V~~l~------~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
+ |++|++++.||.|++||+.+++ .+. .+.+|...|.+++ |+|+++ +|++++.|+.|++||+.++.
T Consensus 76 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~~ 150 (357)
T 3i2n_A 76 TSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQKD 150 (357)
T ss_dssp CCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSCS
T ss_pred CCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCCC
Confidence 8 7999999999999999999886 333 6789999999995 568898 89999999999999999987
Q ss_pred -eeeEeccCCC----cEEEEeecc--cCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcC---CCCEEEE
Q 001403 469 -RTYSFEGHGA----PVYSLCPHA--KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA---NGRRLFS 538 (1084)
Q Consensus 469 -~~~~~~~h~~----~v~~~~~~~--~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~---d~~~l~~ 538 (1084)
.+..+..|.+ .+.+++|.+ ++++.++++++.||.|++||+++.+.... ..+...+.+++|+| +++++++
T Consensus 151 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~ 229 (357)
T 3i2n_A 151 DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVA 229 (357)
T ss_dssp SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEE
T ss_pred CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEE
Confidence 6778876655 788888421 45778999999999999999998776443 55677899999999 9999999
Q ss_pred EeeCCCCCeeEEEecCCCceEeeeee-----ccccccCceEEEEEcCCCC-EEEEEECCCcEEEEECCCC----------
Q 001403 539 CGTSKEGESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV---------- 602 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~---------- 602 (1084)
++. ++.|++||+.+++....+. +|. ..|.+++|+|+++ ++++++.||.|++||+.++
T Consensus 230 ~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g 302 (357)
T 3i2n_A 230 TSL----EGKFHVFDMRTQHPTKGFASVSEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEG 302 (357)
T ss_dssp EES----TTEEEEEEEEEEETTTEEEEEEEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTS
T ss_pred ECC----CCeEEEEeCcCCCcccceeeeccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCC
Confidence 876 6779999999887766554 666 8999999999998 8999999999999998754
Q ss_pred ---------eEEEEEcCCCCCCCcceEEEecCCCEEE-EEECCCeEEEEEcCCCC
Q 001403 603 ---------QLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESN 647 (1084)
Q Consensus 603 ---------~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iwd~~~~~ 647 (1084)
+.+..+..+. ..|.+++|+|++++|+ +++.|+.|++|++.+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 303 IEMGVAGSVSLLQNVTLST--QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CCCCCCCEEEEEEEEECCS--SCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CccccccccceeeccccCC--CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 3555666553 4699999999999998 79999999999998653
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=315.12 Aligned_cols=308 Identities=16% Similarity=0.167 Sum_probs=244.6
Q ss_pred EEecCCCceEeeeeeccccccCceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec-CCC
Q 001403 550 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGT 627 (1084)
Q Consensus 550 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~ 627 (1084)
.+|+....+....+.+|. ..|.+++|+|++ ++|++|+.||.|++||+.+++....+...++...|.+++|+| +++
T Consensus 56 ~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 132 (383)
T 3ei3_B 56 FIRSLKSYKLHRTASPFD---RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTN 132 (383)
T ss_dssp HHHHHTTCEEEEEECCCS---SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEE
T ss_pred ccccccccceEEeccCCC---CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCC
Confidence 345556677778888887 899999999999 999999999999999999999888887655566799999999 789
Q ss_pred EEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccc
Q 001403 628 LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 707 (1084)
Q Consensus 628 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~ 707 (1084)
+|++++.|+.|++||+.+. .+..+..
T Consensus 133 ~l~s~~~d~~i~iwd~~~~-~~~~~~~----------------------------------------------------- 158 (383)
T 3ei3_B 133 QLFVSSIRGATTLRDFSGS-VIQVFAK----------------------------------------------------- 158 (383)
T ss_dssp EEEEEETTTEEEEEETTSC-EEEEEEC-----------------------------------------------------
T ss_pred EEEEEeCCCEEEEEECCCC-ceEEEec-----------------------------------------------------
Confidence 9999999999999998742 1110000
Q ss_pred eeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCcccccc
Q 001403 708 LFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND 787 (1084)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1084)
T Consensus 159 -------------------------------------------------------------------------------- 158 (383)
T 3ei3_B 159 -------------------------------------------------------------------------------- 158 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCc-EEEEEeCCCeEEEEEc
Q 001403 788 TTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDDSTILIYNA 865 (1084)
Q Consensus 788 ~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~la~g~~dg~i~iwd~ 865 (1084)
...+...|.+++|+|++++|++++ |+.|++||+ +++.+..+..|...|.+++|+| +++ +|++|+.|+.|++||+
T Consensus 159 --~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~ 234 (383)
T 3ei3_B 159 --TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDL 234 (383)
T ss_dssp --CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEG
T ss_pred --cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeC
Confidence 001456678888888888888887 688999998 5778888899999999999999 777 9999999999999999
Q ss_pred CC----ceeeeeecccccCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeec--CCCCcc-------CCCCc
Q 001403 866 RS----SEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT--PDGVMT-------LAPSE 931 (1084)
Q Consensus 866 ~~----~~~~~~l~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~--~~~~~~-------~~~~v 931 (1084)
.+ +.++..+ +|...|++++|+| ++++|++++.|+.|++||+.+++......... ...+.. ....+
T Consensus 235 ~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 313 (383)
T 3ei3_B 235 RNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDL 313 (383)
T ss_dssp GGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSE
T ss_pred CCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCc
Confidence 98 5666666 6999999999999 99999999999999999999876433211111 011111 01234
Q ss_pred eEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001403 932 THIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1001 (1084)
Q Consensus 932 ~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~ 1001 (1084)
..++|+|||++ ..+.|+.|++||+.+++.+..+... |...+..++|+|||++|++++ ||.|++||+++
T Consensus 314 ~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 314 IVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred eEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 45666666666 3357899999999999998886533 467788889999999999997 99999999875
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=320.74 Aligned_cols=348 Identities=11% Similarity=0.123 Sum_probs=242.4
Q ss_pred eeEEEecCCCceEeeeeeccccccCceEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEEcC-----------CCCC
Q 001403 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGL 614 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~ 614 (1084)
..+++|+...++....+.+|. +.|.+++|+| ++++|++++.||.|++||+.+++....+.. ..+.
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHG---GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCS---SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred CcceeeccccCcceeeeeccC---CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 347788888888888888887 9999999999 999999999999999999998765443321 1234
Q ss_pred CCcceEEEec-CCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCcc
Q 001403 615 PENPRICFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 693 (1084)
Q Consensus 615 ~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l 693 (1084)
..|.+++|+| ++.++++++.||.|++||+.+++....+.
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------------------------------- 139 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---------------------------------------- 139 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----------------------------------------
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----------------------------------------
Confidence 5689999999 77899999999999999988654332211
Q ss_pred ceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCe
Q 001403 694 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 773 (1084)
Q Consensus 694 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 773 (1084)
T Consensus 140 -------------------------------------------------------------------------------- 139 (408)
T 4a11_B 140 -------------------------------------------------------------------------------- 139 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCCccccccCcCCCCCCCccEEEecC---CCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCc
Q 001403 774 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 849 (1084)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~---dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~ 849 (1084)
+...+.++++++ ++.++++++ ++.|++||+.+++.+..+..|...|.+++|+| ++.
T Consensus 140 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 199 (408)
T 4a11_B 140 -------------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYD 199 (408)
T ss_dssp -------------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCT
T ss_pred -------------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCC
Confidence 112233334443 445777776 68899999999999999999999999999999 666
Q ss_pred -EEEEEeCCCeEEEEEcCCce-eeeee---------------cccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 001403 850 -VIAIGMDDSTILIYNARSSE-VISKL---------------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 912 (1084)
Q Consensus 850 -~la~g~~dg~i~iwd~~~~~-~~~~l---------------~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~ 912 (1084)
+|++|+.||.|++||+.+++ .+..+ .+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence 69999999999999998765 33333 57899999999999999999999999999999998764
Q ss_pred eeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCC
Q 001403 913 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 992 (1084)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg 992 (1084)
............. ............+.+++++.++.|++||+.+++.+.. +.+|...|.+++|+||+++|++++.||
T Consensus 280 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg 356 (408)
T 4a11_B 280 TLVNYGKVCNNSK--KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM-LKGHYKTVDCCVFQSNFQELYSGSRDC 356 (408)
T ss_dssp CCCCCCCCCCCCS--SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE-ECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred ceecccccccccc--ccceeEEecCCCceEEEEecCCEEEEEECcCCcceee-eccCCCeEEEEEEcCCCCEEEEECCCC
Confidence 3211111111111 1123334445556666668999999999999999887 457999999999999999999999999
Q ss_pred cEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCC
Q 001403 993 TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1053 (1084)
Q Consensus 993 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~ 1053 (1084)
.|++||+.+++.+....... ....+.|.+...+.+.+.+|.+++|+.+
T Consensus 357 ~i~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 357 NILAWVPSLYEPVPDDDETT-------------TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp CEEEEEECC----------------------------------------------------
T ss_pred eEEEEeCCCCCccCCCCceE-------------eccccccccceeecccCccCceeecCCc
Confidence 99999999998774443111 0112333234567778899999999874
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=308.49 Aligned_cols=287 Identities=12% Similarity=0.147 Sum_probs=258.1
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
.+.+|...|++++|+|+|++||+++.||.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 378899999999999999999999999999999999987655 7789999999999999999 89999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecC-----CeEEEEECCCCCc-----------eEeecCCCC--eE
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGA-----------RVDYDAPGL--GC 524 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~-----------~~~~~~~~~--~i 524 (1084)
|+.+++.+..+. |...|.+++|++ ++.++++++.+ |.|++||+..... ...+..+.. .+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred ECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 999999998888 889999999955 67899999999 9999999976542 223334444 89
Q ss_pred EEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-ceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 001403 525 TRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 603 (1084)
Q Consensus 525 ~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 603 (1084)
.+++|+|+++++++++. ++.|++||+.+ ++.+..+..|. ..|.+++|+|++++|++++.||.|++||+.+++
T Consensus 179 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHE---KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ 251 (369)
T ss_dssp EEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred eEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCC---CceeEEEECCCCCEEEEecCCceEEEEECCCCc
Confidence 99999999999999875 67799999998 78888888887 899999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCcceEEEecCCCEEEEEECCC--------------eEEEEEcCCCCeeeeccccccceeEEEEcCCCc
Q 001403 604 LLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--------------RIKILETPESNSVDAAGVLSDNLRKLSVNPIST 669 (1084)
Q Consensus 604 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~ 669 (1084)
.+..+... ..+..++|+|+++++++++.++ .+++||..+++.+..+.+|...|.+++|+
T Consensus 252 ~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s---- 324 (369)
T 3zwl_B 252 VLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS---- 324 (369)
T ss_dssp EEEEEECS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC----
T ss_pred eeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC----
Confidence 99888743 3489999999999999999988 89999999999999999999999999997
Q ss_pred eeeeeccCceeEecCCCCCCCCccceecccCcccccccee
Q 001403 670 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 709 (1084)
Q Consensus 670 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~ 709 (1084)
|+++++++++.|+.+++|++..
T Consensus 325 ------------------~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 325 ------------------PQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp ------------------TTSSEEEEEETTSEEEEEEECH
T ss_pred ------------------CCCCEEEEEcCCCeEEEEECcc
Confidence 6788899999999999999874
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=316.57 Aligned_cols=292 Identities=15% Similarity=0.193 Sum_probs=244.4
Q ss_pred eecccCCCCceEEEEcCC----CceeeeecccccCccccccceEEEEEcCCccccceeee--ecCCCCCeEEEEEcCC--
Q 001403 328 QTLIEGSSSPMSMDFHPV----QHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTAL--VRDPGVSVNRVVWSPD-- 399 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spd----g~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~--~~~h~~~V~~v~fspd-- 399 (1084)
..+.+|.+.|.+++|+|+ ...++++..+ +.|+|||+.+......... ...|...|.+++|+|+
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~---------~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 82 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGS---------NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSN 82 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEET---------TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTT
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCC---------CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCC
Confidence 455699999999999994 4445554444 7899999987655433221 2237789999999999
Q ss_pred --CCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeec-CCCcEEEEEEeCCCcEEEEECCCCceeeEe---
Q 001403 400 --GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSF--- 473 (1084)
Q Consensus 400 --g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~-d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~--- 473 (1084)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. ++++++.|+.|++||+.+++.+..+
T Consensus 83 ~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 83 TSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp TCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred CCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 6799999999999999999987655 6779999999999999 788 8999999999999999999999888
Q ss_pred ccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee----------------------------cCCCCeEE
Q 001403 474 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY----------------------------DAPGLGCT 525 (1084)
Q Consensus 474 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----------------------------~~~~~~i~ 525 (1084)
.+|...|.+++|++ ++.+|++++.||.|++||+++.+....+ ..+...|.
T Consensus 158 ~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (366)
T 3k26_A 158 EGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD 235 (366)
T ss_dssp TSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred ccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence 78999999999965 6789999999999999999875443322 23778899
Q ss_pred EEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE--------------eeeeeccccccCceEEEEEcCC--CCEEEEEE
Q 001403 526 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--------------KRTYQGLQLQHNSVSVVHFDTA--KDQILAAG 589 (1084)
Q Consensus 526 ~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~--------------~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~ 589 (1084)
+++|+ ++++++++. ++.|++||+.++.. +..+..|. ..|.+++|+|+ +++|++++
T Consensus 236 ~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~~l~~~~ 306 (366)
T 3k26_A 236 CVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ---CDIWYMRFSMDFWQKMLALGN 306 (366)
T ss_dssp EEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS---CCSSCCCCEECTTSSEEEEEC
T ss_pred EEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccC---CcEEEEEEcCCCCCcEEEEEe
Confidence 99998 778998875 67799999987644 66777776 78999999999 99999999
Q ss_pred CCCcEEEEECCCCe----EEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 590 DDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 590 ~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
.||.|++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 307 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 307 QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999999875 44567766545679999999999999999999999999975
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=324.35 Aligned_cols=301 Identities=12% Similarity=0.119 Sum_probs=230.0
Q ss_pred eeeccccccCceEEEEEcCC-CCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec-CCCEEEEEECCCeEE
Q 001403 562 TYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIK 639 (1084)
Q Consensus 562 ~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~ 639 (1084)
....|. ..|++++|+|. ++.|++|+.||.|+|||+.+++....+...++...|.+++|+| ++++|++++.||+|+
T Consensus 114 ~~~~~~---~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 114 KAAPFD---RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp EEEECS---SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred cCCCCC---CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 344455 78999999994 6789999999999999999887666666555666899999998 789999999999999
Q ss_pred EEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeec
Q 001403 640 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL 719 (1084)
Q Consensus 640 iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~ 719 (1084)
+||+.++... .+.
T Consensus 191 iwd~~~~~~~-~~~------------------------------------------------------------------ 203 (435)
T 4e54_B 191 LQDFKGNILR-VFA------------------------------------------------------------------ 203 (435)
T ss_dssp EEETTSCEEE-EEE------------------------------------------------------------------
T ss_pred EeeccCCcee-EEe------------------------------------------------------------------
Confidence 9998643110 000
Q ss_pred cCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccE
Q 001403 720 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 799 (1084)
Q Consensus 720 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 799 (1084)
. . + .+...+.+
T Consensus 204 ---------------~---------~-~--------------------------------------------~~~~~~~~ 214 (435)
T 4e54_B 204 ---------------S---------S-D--------------------------------------------TINIWFCS 214 (435)
T ss_dssp ---------------C---------C-S--------------------------------------------SCSCCCCC
T ss_pred ---------------c---------c-C--------------------------------------------CCCccEEE
Confidence 0 0 0 13345667
Q ss_pred EEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee---eec
Q 001403 800 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS---KLE 875 (1084)
Q Consensus 800 l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~---~l~ 875 (1084)
++|+|++++|++++ ||.|++||+. ++.+..+.+|...|++++|+|++..+|++|+.|+.|+|||+.+++... ...
T Consensus 215 ~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~ 293 (435)
T 4e54_B 215 LDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL 293 (435)
T ss_dssp EEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC
T ss_pred EEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEee
Confidence 88888999888887 6889999985 456677888999999999999555689999999999999998876543 336
Q ss_pred ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE---------
Q 001403 876 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--------- 946 (1084)
Q Consensus 876 ~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--------- 946 (1084)
+|...|++++|+|||++|++++.||+|+|||+.+++............ .....+..+.|+|++.+++++
T Consensus 294 ~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 371 (435)
T 4e54_B 294 PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH--FQHLTPIKAAWHPRYNLIVVGRYPDPNFKS 371 (435)
T ss_dssp BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC--CSSSCCCBCEECSSSSCEEEECCCCTTSCC
T ss_pred eccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc--cccceeEEEEEcCCCCEEEEEEcCCCCeEE
Confidence 799999999999999999999999999999999876443222111110 000123345666666666653
Q ss_pred ----eCCeEEEEEcCCcceeeEeecCCCCCEEEE-EEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 001403 947 ----HETHLAIYEAEELTCLKQWFPISSVPISQA-TFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1005 (1084)
Q Consensus 947 ----~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l-~fs~dg~~l~t~~~dg~i~vwd~~~~~~~ 1005 (1084)
.++.|++||..+++.+..+..+|...|.++ +|+|||++|++|+ |+.|+|||+++|+..
T Consensus 372 ~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 372 CTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp SSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 235799999999999998888899999987 6999999999875 889999999998654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=312.92 Aligned_cols=297 Identities=11% Similarity=0.111 Sum_probs=231.5
Q ss_pred CceEEEEcCCCceeeeecccc-cCccccccceEEEEEcCCccccc-------eeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 001403 336 SPMSMDFHPVQHTLLLGLWDV-NSGQKLFIRNFKVWDIGACSMLF-------KTALVRDPGVSVNRVVWSPDGSLLGVAY 407 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~-~sg~~~~~~~v~iwd~~~~~~~~-------~~~~~~~h~~~V~~v~fspdg~~las~~ 407 (1084)
+|.+++|+|||++||+|.-|. ++| .++.|+||++....... ....+.+|...|.+++++ ++.+++|.
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sG---i~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~ 90 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNG---IPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGC 90 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSS---CCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEEC
T ss_pred CEEEEEEeCCCcEEEEECCCccccC---CCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEE
Confidence 899999999999999986541 122 13679999997554321 112367888899888765 55676653
Q ss_pred -----------CCCEEEEEEccCCccccc-e-----eeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001403 408 -----------SKHIVQLYAYHGGSDARQ-Q-----LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 470 (1084)
Q Consensus 408 -----------~dg~v~iwd~~~~~~~~~-~-----~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~ 470 (1084)
.|+++++|++.++..... . .....+...+.+++|||||+.+.+++++.|++|+|||+++++++
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~ 170 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK 170 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE
Confidence 467899999887543211 1 11223455689999999999655667778999999999999999
Q ss_pred eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE--eecCCCCeEEEEEEcCCCCEEEEEeeCCCCCee
Q 001403 471 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 548 (1084)
Q Consensus 471 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 548 (1084)
..+. |...|.+++|+| ||+++++++.+ .+++|+..++.... ....+...+.+++|+|+++++++++.++.....
T Consensus 171 ~~~~-~~~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~ 246 (365)
T 4h5i_A 171 FEIE-TRGEVKDLHFST--DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIV 246 (365)
T ss_dssp EEEE-CSSCCCEEEECT--TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEE
T ss_pred EEeC-CCCceEEEEEcc--CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeE
Confidence 8886 778899999954 77899998855 45666666666544 334567789999999999999999886655667
Q ss_pred EEEecCCCceE----eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE-cCCCCCCCcceEEEe
Q 001403 549 LVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLPENPRICFN 623 (1084)
Q Consensus 549 i~~wd~~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~v~~s 623 (1084)
+++|+...+.. ...+.+|. ..|.+++|+|++++|++|+.|++|+|||+.+++++..+ .+|. ..|.+++|+
T Consensus 247 i~~~~~~~~~~~~~~~~~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~--~~V~~v~fS 321 (365)
T 4h5i_A 247 LTKISIKSGNTSVLRSKQVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHS--FAITEVTIS 321 (365)
T ss_dssp EEEEEEETTEEEEEEEEEEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSS--SCEEEEEEC
T ss_pred EeecccccceecceeeeeecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCccc--CCEEEEEEC
Confidence 89999876654 33455666 88999999999999999999999999999999999876 4554 469999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCC
Q 001403 624 KNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 624 ~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
|||++||+++.|++|+||+++..
T Consensus 322 pdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 322 PDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999754
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=324.18 Aligned_cols=302 Identities=16% Similarity=0.175 Sum_probs=237.5
Q ss_pred eeeecccCCCCceEEEEcC-CCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC-CCCEE
Q 001403 326 VAQTLIEGSSSPMSMDFHP-VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 403 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~sp-dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~l 403 (1084)
......+|...|+|++||| ++.+||+|+.| |+|+|||+.+....... .+.+|...|++++|+| ++++|
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~d---------g~i~lWd~~~~~~~~~~-~~~gH~~~V~~l~f~p~~~~~l 180 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKG---------GDIMLWNFGIKDKPTFI-KGIGAGGSITGLKFNPLNTNQF 180 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETT---------SCEEEECSSCCSCCEEE-CCCSSSCCCCEEEECSSCTTEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCC---------CEEEEEECCCCCceeEE-EccCCCCCEEEEEEeCCCCCEE
Confidence 3455678999999999999 56799999988 99999999876543322 2668999999999998 78999
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEE
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 483 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~ 483 (1084)
++|+.||+|++||++++.. ........+...+.+++|+|+++ +|++|+.||.|++||++ ++.+..+.+|...|.++
T Consensus 181 ~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 181 YASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHV 256 (435)
T ss_dssp EEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEE
T ss_pred EEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccceEEee
Confidence 9999999999999987542 22222234455688999999999 89999999999999975 56778899999999999
Q ss_pred eecccCCCcEEEEEecCCeEEEEECCCCCceEe---ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 484 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
+|+|.. ..++++++.|+.|++||+........ ...|...|.+++|+|+|++|++++. ++.|++||+.++...
T Consensus 257 ~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 257 ALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQWDCP 331 (435)
T ss_dssp EECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSSSSE
T ss_pred eecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCCccc
Confidence 997653 25889999999999999987665433 3567789999999999999999986 667999999998887
Q ss_pred eeeeccccc---cCceEEEEEcCCCCEEEEEE------------CCCcEEEEECCCCeEEEEEcCCCCCCCcceE-EEec
Q 001403 561 RTYQGLQLQ---HNSVSVVHFDTAKDQILAAG------------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-CFNK 624 (1084)
Q Consensus 561 ~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s~ 624 (1084)
..+..|... ...+..+.|+|++..+++++ .++.|++||..+++.+..+..+. ...|.++ +|+|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~~~fsp 410 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSLNEFNP 410 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCEEEECT
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEEEEECC
Confidence 777655411 11233456777777666654 34679999999999998875432 2356776 6999
Q ss_pred CCCEEEEEECCCeEEEEEcCCCCe
Q 001403 625 NGTLLAVIANENRIKILETPESNS 648 (1084)
Q Consensus 625 ~~~~l~~~~~dg~i~iwd~~~~~~ 648 (1084)
+|++|++|+ |+.|+||++.+++.
T Consensus 411 dg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 411 MGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp TSSCEEEEC-SSEEEECCCC----
T ss_pred CCCEEEEEc-CCcEEEEECCcCee
Confidence 999999876 78999999998754
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=310.64 Aligned_cols=293 Identities=12% Similarity=0.051 Sum_probs=246.8
Q ss_pred cccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 001403 330 LIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 409 (1084)
Q Consensus 330 l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d 409 (1084)
+..|.+.|.+++|+|||++||++..| +.|+|||+.+...... ..+.+|...|.+++|+|++++|++++.|
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d---------~~v~i~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~~~~~d 73 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNN---------HEVHIYEKSGNKWVQV-HELKEHNGQVTGVDWAPDSNRIVTCGTD 73 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSS---------SEEEEEEEETTEEEEE-EEEECCSSCEEEEEEETTTTEEEEEETT
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCC---------CEEEEEeCCCCcEEee-eeecCCCCcccEEEEeCCCCEEEEEcCC
Confidence 45688999999999999999999777 9999999987652111 2367899999999999999999999999
Q ss_pred CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce---e-eEeccCCCcEEEEee
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---T-YSFEGHGAPVYSLCP 485 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~---~-~~~~~h~~~v~~~~~ 485 (1084)
+.|++||+.+++.... ..+..|...|.+++|+|+++ ++++++.|+.|++||+.++.. . ....+|...|.+++|
T Consensus 74 g~i~vwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 74 RNAYVWTLKGRTWKPT-LVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp SCEEEEEEETTEEEEE-EECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred CeEEEEECCCCeeeee-EEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence 9999999988764332 24567999999999999999 899999999999999998863 3 333678999999999
Q ss_pred cccCCCcEEEEEecCCeEEEEECC------------------CCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCe
Q 001403 486 HAKENIHFIFSISVDGKIKAWLYD------------------SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 547 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 547 (1084)
++ ++.++++++.||.|++||+. .......+..+...+.+++|+|++++|++++. ++
T Consensus 151 ~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~ 224 (372)
T 1k8k_C 151 HP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH----DS 224 (372)
T ss_dssp CT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET----TT
T ss_pred cC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC----CC
Confidence 65 66899999999999999954 45666777788889999999999999999985 67
Q ss_pred eEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC--CeEE--------------------
Q 001403 548 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLL-------------------- 605 (1084)
Q Consensus 548 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~-------------------- 605 (1084)
.|++||+.+++.+..+..|. ..+.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 225 ~i~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (372)
T 1k8k_C 225 TVCLADADKKMAVATLASET---LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE 300 (372)
T ss_dssp EEEEEEGGGTTEEEEEECSS---CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHH
T ss_pred EEEEEECCCCceeEEEccCC---CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhh
Confidence 79999999999999999887 899999999999877777 999999999987 5321
Q ss_pred ------------------EEEcCCCCCCCcceEEEe-cCC---CEEEEEECCCeEEEEEcCCC
Q 001403 606 ------------------TTIDAGGGLPENPRICFN-KNG---TLLAVIANENRIKILETPES 646 (1084)
Q Consensus 606 ------------------~~~~~~~~~~~v~~v~~s-~~~---~~l~~~~~dg~i~iwd~~~~ 646 (1084)
..+. .++...|.+++|. ++| .+|++++.||.|++|++.++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 301 RFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp HHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred hhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 1111 1344579999866 676 99999999999999998764
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=307.35 Aligned_cols=203 Identities=12% Similarity=0.119 Sum_probs=172.4
Q ss_pred CCCCccEEEecCCCCEEEEEe---CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce
Q 001403 793 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 869 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~ 869 (1084)
+...+.+++|||||+++++++ |++|++||+.+++++..+. |...|.+++|+| |+++|++++.+ .+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence 556788999999999988664 6899999999999998886 777899999999 89999999855 56777777776
Q ss_pred ee--eeecccccCEEEEEEcCCCCEEEEEeCCC----cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEE
Q 001403 870 VI--SKLEGHSKRVTGLVFSDALNILVSSGGDA----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 943 (1084)
Q Consensus 870 ~~--~~l~~h~~~V~~l~~spd~~~l~s~s~dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 943 (1084)
.+ ....+|...|.+++|+||++++++++.|+ .+++|++........ ......+|.. .|++++|||||++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~---~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVL-RSKQVTNRFK---GITSMDVDMKGELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEE-EEEEEESSCS---CEEEEEECTTSCEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecce-eeeeecCCCC---CeEeEEECCCCCce
Confidence 54 34567999999999999999999999887 688999887553322 1223344443 79999999999999
Q ss_pred EEE-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001403 944 LLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 944 a~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
|++ .|++|+|||+.+++++..+..+|..+|++++|||||++|++++.|++|+||+++..
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 995 78999999999999999888899999999999999999999999999999999754
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-32 Score=331.02 Aligned_cols=212 Identities=19% Similarity=0.315 Sum_probs=184.5
Q ss_pred eeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-----ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCe
Q 001403 428 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 502 (1084)
Q Consensus 428 ~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g-----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~ 502 (1084)
.+.+|.+.|++++|+|++.. +|+||+.|++|++||+.++ .....+.+|...|.+++|++ ++.+|++++.||+
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~-~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNAD-IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS--DGQFALSGSWDGE 453 (694)
T ss_dssp EEECCSSCEEEEECCTTCCS-EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT--TSSEEEEEETTSE
T ss_pred hcccCCceeEEEEecCCCCC-EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC--CCCEEEEEeCCCc
Confidence 57899999999999998644 8999999999999998763 44578899999999999954 7789999999999
Q ss_pred EEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCC
Q 001403 503 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 582 (1084)
Q Consensus 503 i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 582 (1084)
|++||+.++.....+..|...|.+++|+|++++|++++. ++.|++||...............|...|.+++|+|++
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR----DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC----CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 999999999888899999999999999999999999986 6679999987655444433323334789999999986
Q ss_pred --CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCe
Q 001403 583 --DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 648 (1084)
Q Consensus 583 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 648 (1084)
..+++++.|++|++||+.+++....+..|.. .|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~ 595 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG--YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK 595 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSBCEEEETTTTEE
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Confidence 6899999999999999999999998886654 699999999999999999999999999887643
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=312.75 Aligned_cols=317 Identities=10% Similarity=0.016 Sum_probs=246.8
Q ss_pred ccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 001403 331 IEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 410 (1084)
Q Consensus 331 ~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg 410 (1084)
+.-.+.|.+++|||||+++|+++.| ++|+ |..... .+.+|...|.+|+|+|+| .++
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D---------~TV~--d~~~~~------~l~gh~~~v~~V~FsPdg-------~~~ 67 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPD---------ISIG--QPKYAK------DINCNSKNLFHVKEFPLE-------FEN 67 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSS---------EEEE--EECCCS------CCSSBGGGTEEEEEECCC-------CCC
T ss_pred hHhhccEEEEEECCCCCEEEEEcCC---------ceee--cccccc------eecCCCccEEEEEECCCC-------Ccc
Confidence 3445699999999999999999998 9999 644332 246899999999999999 455
Q ss_pred EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC-----cEEEEee
Q 001403 411 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-----PVYSLCP 485 (1084)
Q Consensus 411 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~-----~v~~~~~ 485 (1084)
.+.+|+.+....+ .+ .|...|.+++|||||+ .|++++.||+|++||.++ ++..+. |.. .|.+++|
T Consensus 68 ~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svaf 137 (588)
T 2j04_A 68 KLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEW 137 (588)
T ss_dssp TTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEE
T ss_pred eEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEE
Confidence 5555554332211 12 5688999999999999 799999999999999544 667777 765 4999999
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCCCc-------eEee----cCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecC
Q 001403 486 HAKENIHFIFSISVDGKIKAWLYDSLGA-------RVDY----DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 554 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~-------~~~~----~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~ 554 (1084)
+| ||++|++|+.||+|++||+..+.. ...+ .+|...|.+++|+||| +++++. ++.|++||+
T Consensus 138 SP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tVrlWd~ 209 (588)
T 2j04_A 138 NP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSVFSMTV 209 (588)
T ss_dssp CS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCEEEECC
T ss_pred cC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeEEEEEC
Confidence 55 789999999999999999998753 3444 5567799999999999 666654 677999999
Q ss_pred CCceE---eeeee-ccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEE--ecCCCE
Q 001403 555 SEGAI---KRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF--NKNGTL 628 (1084)
Q Consensus 555 ~~~~~---~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~--s~~~~~ 628 (1084)
.++.. .+.+. +|. ..|.+++|+ ++.+++++ +++|++||+.+++......+| ...+..++| +|++..
T Consensus 210 ~~~~~~~~~~tL~~~h~---~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh--~~~V~~va~~~s~d~~~ 281 (588)
T 2j04_A 210 SASSHQPVSRMIQNASR---RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGS--LENFHIIPLNHEKESTI 281 (588)
T ss_dssp CSSSSCCCEEEEECCCS---SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSC--CSCCCEEEETTCSSCEE
T ss_pred CCCccccceeeeccccc---CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCC--CceEEEEEeeeCCCCCE
Confidence 88774 24553 555 789999999 68899887 699999999988875444343 446999999 999999
Q ss_pred EEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccce
Q 001403 629 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 629 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
+++++.+|. ++|.... +++ +|++..+++. |+++++|+..
T Consensus 282 La~a~edG~-klw~~d~----------------~~~----------------------spd~~l~a~~--d~~v~lW~~~ 320 (588)
T 2j04_A 282 LLMSNKTSY-KVLLEDE----------------LHV----------------------TADNIIAPYL--EKKFKKWSTI 320 (588)
T ss_dssp EEECSSCEE-EEEESSS----------------EEE----------------------ECCCSSHHHH--HHHHHHTTTT
T ss_pred EEEEcCCCC-EEEeecc----------------EEE----------------------CCCceEEEEc--CCEEEEEECC
Confidence 999999999 9999771 223 3677777765 8999999974
Q ss_pred eecCccceeeccCCccccceEEEEEEecCCCeEEEeec
Q 001403 709 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS 746 (1084)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 746 (1084)
... +. ...+...|.+++|||||+.+++++.
T Consensus 321 g~~------l~--~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 321 WNE------FN--NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp TTS------SS--SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred CCc------ee--eeccceEEEEEEECCCCCEEEEEEe
Confidence 322 11 1123567999999999998887765
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=296.71 Aligned_cols=253 Identities=13% Similarity=0.171 Sum_probs=211.7
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC--CCCEEEE
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGV 405 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~las 405 (1084)
.++.+|.+.|.+++|+|||++||+++.| ++|+|||+.+...... ..+.+|...|.+++|+| +|++||+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D---------~~v~iw~~~~~~~~~~-~~l~gH~~~V~~v~~s~~~~g~~l~s 72 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSD---------KTIKIFEVEGETHKLI-DTLTGHEGPVWRVDWAHPKFGTILAS 72 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETT---------SCEEEEEBCSSCBCCC-EEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCC---------CEEEEEecCCCCcEEE-EEEccccCCeEEEEecCCCcCCEEEE
Confidence 4678999999999999999999999998 9999999975432221 23789999999999987 4899999
Q ss_pred EeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC--CCcEEEEEEeCCCcEEEEECCCCce--eeEeccCCCcEE
Q 001403 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR--TYSFEGHGAPVY 481 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~l~s~~~d~~i~vwd~~~g~~--~~~~~~h~~~v~ 481 (1084)
|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++||++++.. ...+.+|...|.
T Consensus 73 ~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~ 149 (297)
T 2pm7_B 73 CSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN 149 (297)
T ss_dssp EETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEE
T ss_pred EcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeeecccCccc
Confidence 999999999999987522 22357789999999999998 77 899999999999999987642 466789999999
Q ss_pred EEeecccC-----------CCcEEEEEecCCeEEEEECCCCC----ceEeecCCCCeEEEEEEcCCC---CEEEEEeeCC
Q 001403 482 SLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSANG---RRLFSCGTSK 543 (1084)
Q Consensus 482 ~~~~~~~~-----------~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~s~d~---~~l~~~~~~~ 543 (1084)
+++|+|.. ++.+|++++.|++|++||++... ....+..|...|.+++|+|++ ++|++++.
T Consensus 150 ~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~-- 227 (297)
T 2pm7_B 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ-- 227 (297)
T ss_dssp EEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET--
T ss_pred eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC--
Confidence 99997752 35799999999999999998766 345678899999999999995 78998886
Q ss_pred CCCeeEEEecCCCce---Eeeee--eccccccCceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 001403 544 EGESFLVEWNESEGA---IKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 600 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~---~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 600 (1084)
++.|++||+.++. ....+ ..+. ..|.+++|+|++++|++++.||.|++|+..
T Consensus 228 --D~~v~iWd~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 228 --DRTCIIWTQDNEQGPWKKTLLKEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp --TSCEEEEEESSTTSCCEEEESSSSCCS---SCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred --CCcEEEEEeCCCCCccceeeeecccCC---CcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 6679999988743 11222 2333 789999999999999999999999999976
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=320.00 Aligned_cols=291 Identities=12% Similarity=0.049 Sum_probs=226.0
Q ss_pred cccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 001403 330 LIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 409 (1084)
Q Consensus 330 l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d 409 (1084)
...|.+.|.+++|+|||++||+++.| +.|+|||+.+..... ...+.+|...|.+++|+|+|++|++++.|
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d---------~~i~iw~~~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~d 76 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTAT---------NQVELYEQDGNGWKH-ARTFSDHDKIVTCVDWAPKSNRIVTCSQD 76 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSS---------SCBCEEEEETTEEEE-CCCBCCCSSCEEEEEECTTTCCEEEEETT
T ss_pred EecCCCcEEEEEECCCCCEEEEecCC---------CEEEEEEccCCceEE-EEEEecCCceEEEEEEeCCCCEEEEEeCC
Confidence 34566799999999999999999888 999999998763111 12377899999999999999999999999
Q ss_pred CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc---eeeEecc-CCCcEEEEee
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFEG-HGAPVYSLCP 485 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~---~~~~~~~-h~~~v~~~~~ 485 (1084)
++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++||+++++ ....+.+ |...|.+++|
T Consensus 77 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~ 154 (377)
T 3dwl_C 77 RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDW 154 (377)
T ss_dssp SSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEE
T ss_pred CeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEE
Confidence 9999999999873344446778999999999999999 79999999999999999887 4778887 9999999999
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCC------------------CceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCe
Q 001403 486 HAKENIHFIFSISVDGKIKAWLYDSL------------------GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 547 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~dg~i~iwd~~~~------------------~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 547 (1084)
++ ++.+|++++.||.|++||+... .....+ .+...|.+++|+|++++|++++. ++
T Consensus 155 ~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~----d~ 227 (377)
T 3dwl_C 155 HP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGH----DS 227 (377)
T ss_dssp CT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEET----TT
T ss_pred cC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeC----CC
Confidence 65 6789999999999999998532 233344 77788999999999999999986 67
Q ss_pred eEEEecCCCceE----eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCe--------------------
Q 001403 548 FLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ-------------------- 603 (1084)
Q Consensus 548 ~i~~wd~~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-------------------- 603 (1084)
.|++||+.+++. +..+.+|. ..|.+++|+|++++|++++.++.+ +|+.....
T Consensus 228 ~i~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (377)
T 3dwl_C 228 SVTIAYPSAPEQPPRALITVKLSQ---LPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTG 303 (377)
T ss_dssp EEC-CEECSTTSCEEECCCEECSS---SCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSS
T ss_pred cEEEEECCCCCCcceeeEeecCCC---CceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccc
Confidence 799999999887 77888887 899999999999999888776666 66554211
Q ss_pred -------------------EEEEEcC-----------CCCCCCcceEEEecC-CC---EEEEEECCCeEEEEEc
Q 001403 604 -------------------LLTTIDA-----------GGGLPENPRICFNKN-GT---LLAVIANENRIKILET 643 (1084)
Q Consensus 604 -------------------~~~~~~~-----------~~~~~~v~~v~~s~~-~~---~l~~~~~dg~i~iwd~ 643 (1084)
....... ..+...|.++++.++ +. .+++++.||.|++||+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 304 NTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000000 013446888886653 33 6999999999999985
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-32 Score=307.85 Aligned_cols=300 Identities=17% Similarity=0.231 Sum_probs=246.5
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 407 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~ 407 (1084)
....+|.+.+...++++++..++++..| +.|+|||+.++...... ..+|...|.+++|+|+|++|++|+
T Consensus 85 ~~~~~~~~~~~~~~~~~s~~~l~~~~~d---------~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~~~~ 153 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSNLNVVAVALE---------RNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGSFLSVGL 153 (401)
T ss_dssp EECTTCCCCTTCBCEEECTTSEEEEEET---------TEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSSEEEEEE
T ss_pred eeCCCCcCCceEEEEeecCCCEEEEECC---------CeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCCEEEEEC
Confidence 3345777776655555445667777777 99999999887654332 334889999999999999999999
Q ss_pred CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC-CCceeeEeccCCCcEEEEeec
Q 001403 408 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEGHGAPVYSLCPH 486 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~-~g~~~~~~~~h~~~v~~~~~~ 486 (1084)
.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++++.|+.|++||++ .+..+..+.+|...|.+++|+
T Consensus 154 ~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 226 (401)
T 4aez_A 154 GNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226 (401)
T ss_dssp TTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc
Confidence 99999999999987655 677999999999994 45 79999999999999999 567788899999999999996
Q ss_pred ccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecc
Q 001403 487 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 566 (1084)
Q Consensus 487 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 566 (1084)
+ ++.+|++++.||.|++||+.+......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.+..+..+
T Consensus 227 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~~~~~~~ 303 (401)
T 4aez_A 227 S--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARVNTVDAG 303 (401)
T ss_dssp T--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEEEEEECS
T ss_pred C--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEEEEEeCC
Confidence 5 6789999999999999999998888888889999999999998765554431 122678999999999998888643
Q ss_pred ccccCceEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 567 QLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 567 ~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
..+.+++|+|+++.+++++ .||.|++||+.+++.........+...|.+++|+|++++|++++.||.|++|++.
T Consensus 304 ----~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 304 ----SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp ----SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred ----CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 5899999999999999954 8999999999998777665444445579999999999999999999999999999
Q ss_pred CCCeeeec
Q 001403 645 ESNSVDAA 652 (1084)
Q Consensus 645 ~~~~~~~~ 652 (1084)
+++.+...
T Consensus 380 ~~~~~~~~ 387 (401)
T 4aez_A 380 DGDHVKRP 387 (401)
T ss_dssp C-------
T ss_pred CCcccccc
Confidence 88665443
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=296.30 Aligned_cols=252 Identities=17% Similarity=0.298 Sum_probs=213.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC--CCcEEEEEEeCCCcEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 461 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~l~s~~~d~~i~v 461 (1084)
+.+|...|.+++|+|||++||+|+.|++|+|||+.++.. +....+.+|.++|.+++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 678999999999999999999999999999999975421 223378899999999999864 77 8999999999999
Q ss_pred EECCCCc--eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc--eEeecCCCCeEEEEEEcCC-----
Q 001403 462 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN----- 532 (1084)
Q Consensus 462 wd~~~g~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d----- 532 (1084)
||+++++ .+..+.+|...|.+++|+|..++.+|++++.||.|++||++.... ...+..|...+.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 567788999999999998765578999999999999999987642 4566788889999999997
Q ss_pred --------CCEEEEEeeCCCCCeeEEEecCCCce----EeeeeeccccccCceEEEEEcCCC---CEEEEEECCCcEEEE
Q 001403 533 --------GRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIW 597 (1084)
Q Consensus 533 --------~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iw 597 (1084)
+++|++++. ++.|++||+++++ ....+.+|. ..|.+++|+|++ .+|++++.|++|++|
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~---~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCC---CceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 578999886 6679999998765 566777887 899999999984 899999999999999
Q ss_pred ECCCCe---EEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 598 DMNKVQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 598 d~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
|+.++. ....+....+...|.+++|+|++++|++++.|+.|++|+...
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 998743 222332233345689999999999999999999999999763
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=312.80 Aligned_cols=303 Identities=10% Similarity=0.064 Sum_probs=257.3
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCcc---ccceeeeecccccEeEEEeecC----C---CcEEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAP----C---KQISVIT 452 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~---~~~~~~l~~h~~~V~~l~~s~d----~---~~l~l~s 452 (1084)
.+.+|...|.+++|+| ++|++|+.||.|++||+.+++. ......+.+|...|.+++|+|+ + + +|++
T Consensus 11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~--~l~s 86 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC--LVAT 86 (397)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE--EEEE
T ss_pred hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc--EEEE
Confidence 4778999999999999 8999999999999999998861 1123367799999999999999 8 8 8999
Q ss_pred EeCCCcEEEEECCCCce-----eeEeccC-----CCcEEEEeeccc--CCCcE-EEEEecCCeEEEEECCC------CCc
Q 001403 453 CGDDKTIKVWDAVTGSR-----TYSFEGH-----GAPVYSLCPHAK--ENIHF-IFSISVDGKIKAWLYDS------LGA 513 (1084)
Q Consensus 453 ~~~d~~i~vwd~~~g~~-----~~~~~~h-----~~~v~~~~~~~~--~~~~~-l~s~s~dg~i~iwd~~~------~~~ 513 (1084)
++.|+.|++||+.+++. +..+..| ...|.+++|++. +++.+ |++++.||.|++||+.. ...
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence 99999999999999887 8889888 599999999722 46788 99999999999999988 555
Q ss_pred eE-----ee-------cCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeec---c---ccccCceEE
Q 001403 514 RV-----DY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG---L---QLQHNSVSV 575 (1084)
Q Consensus 514 ~~-----~~-------~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~---~~~~~~v~~ 575 (1084)
.. .+ ..+...+.+++|+|++ ++++++. ++.|++||+.+++.+..+.. | . ..+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~h~~~~---~~i~~ 238 (397)
T 1sq9_A 167 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNS---NSIRS 238 (397)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCC---CCEEE
T ss_pred eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC----CCcEEEEECCCCceeEEEeccccccccC---Cccce
Confidence 44 55 4467789999999999 8888875 67799999999999999988 6 5 89999
Q ss_pred EEEcCCCCEEEEEECC---CcEEEEECCCCeEEEEEcCCC-----------CCCCcceEEEecCCCEEEEEECCCeEEEE
Q 001403 576 VHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGG-----------GLPENPRICFNKNGTLLAVIANENRIKIL 641 (1084)
Q Consensus 576 ~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 641 (1084)
++|+|++++|++++.| |.|++||+.+++.+..+.... +...|.+++|+|++++|++++.||.|++|
T Consensus 239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 318 (397)
T ss_dssp EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred EEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 9999999999999999 999999999999999887611 23469999999999999999999999999
Q ss_pred EcCCCCeeeecc------cc---------------ccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccC
Q 001403 642 ETPESNSVDAAG------VL---------------SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 700 (1084)
Q Consensus 642 d~~~~~~~~~~~------~~---------------~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 700 (1084)
|+.+++.+..+. .| ...|.+++|+|++..++.+ ..+++++++++.|+
T Consensus 319 d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~------------~~~~~~l~s~~~dg 386 (397)
T 1sq9_A 319 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG------------ADLNESLCCVCLDR 386 (397)
T ss_dssp ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTT------------CTTSCEEEEEETTT
T ss_pred EcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccc------------ccccceEEEecCCC
Confidence 999999988888 77 8899999998654332221 12337899999999
Q ss_pred cccccccee
Q 001403 701 KSEVEKPLF 709 (1084)
Q Consensus 701 ~i~~w~~~~ 709 (1084)
.+++|++..
T Consensus 387 ~i~iw~~~~ 395 (397)
T 1sq9_A 387 SIRWFREAG 395 (397)
T ss_dssp EEEEEEEEC
T ss_pred cEEEEEcCC
Confidence 999999864
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-31 Score=304.75 Aligned_cols=289 Identities=15% Similarity=0.255 Sum_probs=242.7
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 415 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iw 415 (1084)
....|+||++ .+||+|. | ++|+|||..++...... .+.+|...|++|+|+|||++||+|+.||+|+||
T Consensus 107 y~~~l~wS~~-n~lAvgl-d---------~tV~lWd~~tg~~~~~~-~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iW 174 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-D---------NSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 174 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-T---------TEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cceeEEECCC-CEEEEEe-C---------CEEEEEECCCCCEEEEE-EecCCCCcEEEEEECCCCCEEEEEECCCeEEEE
Confidence 4678999986 4888874 5 99999999987654332 256788899999999999999999999999999
Q ss_pred EccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-ceeeEeccCCCcEEEEeecccCCCcEE
Q 001403 416 AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPHAKENIHFI 494 (1084)
Q Consensus 416 d~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g-~~~~~~~~h~~~v~~~~~~~~~~~~~l 494 (1084)
|+.+++.++ .+.+|...|.+++++ +. ++++|+.|+.+++||.... ..+..+.+|...+..+.+.+ ++.++
T Consensus 175 d~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~--~g~~l 245 (420)
T 4gga_A 175 DVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP--DGRHL 245 (420)
T ss_dssp ETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT--TSSEE
T ss_pred EcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC--CCCee
Confidence 999997665 778999999998875 45 8999999999999998864 45678899999999999954 67899
Q ss_pred EEEecCCeEEEEECCCCCc----eEeecCCCCeEEEEEEcCCCCE-EEEEeeCCCCCeeEEEecCCCceEeeeeeccccc
Q 001403 495 FSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRR-LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569 (1084)
Q Consensus 495 ~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~d~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 569 (1084)
++++.||.+++|+....+. ......+...|.+++|+|++.. +++++. ..++.|++||+.+++....+..+.
T Consensus 246 ~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~~~~~~~-- 321 (420)
T 4gga_A 246 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLSAVDAHS-- 321 (420)
T ss_dssp EEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEEEEECSS--
T ss_pred eeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccceeecccc--
Confidence 9999999999999987653 4456778889999999997654 444443 237789999999999998887665
Q ss_pred cCceEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCC
Q 001403 570 HNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 647 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 647 (1084)
.+.++.|+|+++.+++++ .|+.|+|||+.+++++..+.+|.. .|.+++|+|||++|++++.|++|++||+.+..
T Consensus 322 --~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~--~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 322 --QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp --CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred --ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 789999999999998865 789999999999999999987654 69999999999999999999999999998765
Q ss_pred eeeecc
Q 001403 648 SVDAAG 653 (1084)
Q Consensus 648 ~~~~~~ 653 (1084)
+.....
T Consensus 398 ~~~~~~ 403 (420)
T 4gga_A 398 PARRRE 403 (420)
T ss_dssp CC----
T ss_pred ccchhh
Confidence 554443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-32 Score=306.02 Aligned_cols=290 Identities=12% Similarity=0.098 Sum_probs=247.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
+..|..+|.+++|+|||++||+++.|+.|++||+.+++ ......+.+|...|.+++|+|+++ ++++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 44589999999999999999999999999999999875 113336789999999999999999 899999999999999
Q ss_pred CCCCceeeE--eccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc----eEeecCCCCeEEEEEEcCCCCEEE
Q 001403 464 AVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLF 537 (1084)
Q Consensus 464 ~~~g~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~d~~~l~ 537 (1084)
+++++.... +..|...|.+++|++ ++.+|++++.||.|++||++.... ......+...+.+++|+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 998875544 467999999999965 678999999999999999998774 223356678999999999999999
Q ss_pred EEeeCCCCCeeEEEecC------------------CCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 001403 538 SCGTSKEGESFLVEWNE------------------SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 599 (1084)
Q Consensus 538 ~~~~~~~~~~~i~~wd~------------------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 599 (1084)
+++. ++.|++||+ .+++.+..+..|. ..+.+++|+|++++|++++.||.|++||+
T Consensus 159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS---SCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCC---CeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9986 667999995 4678888888777 89999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCC--CCe-----------------------------
Q 001403 600 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE--SNS----------------------------- 648 (1084)
Q Consensus 600 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~--~~~----------------------------- 648 (1084)
.+++.+..+..+.. .+.+++|+|++.+++++ .|+.|++|++.+ +..
T Consensus 232 ~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
T 1k8k_C 232 DKKMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 308 (372)
T ss_dssp GGTTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred CCCceeEEEccCCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence 99999999886643 68999999999988887 899999999987 310
Q ss_pred ---e------eec-cccccceeEEEEcCCCceeeeeccCceeEecCCCCCCC---CccceecccCcccccccee
Q 001403 649 ---V------DAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV---KPEISVEAENKSEVEKPLF 709 (1084)
Q Consensus 649 ---~------~~~-~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~---~~l~~~~~d~~i~~w~~~~ 709 (1084)
. ..+ .+|...|+++++. .++| .++++++.||.|++|++..
T Consensus 309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~---------------------~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 309 ASSEGSAAAGAGLDSLHKNSVSQISVL---------------------SGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp C---------CCCSSSSSSCEEEEEEE---------------------ESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccccCccccccccccccCCcceeEEe---------------------cCCCcceeeEEEecCCCceEEEEecC
Confidence 0 222 4788888888865 2556 8999999999999999864
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-31 Score=305.54 Aligned_cols=337 Identities=14% Similarity=0.122 Sum_probs=245.4
Q ss_pred ceeeecccCCCCceEEEEcC-CCceeeeecccccCccccccceEEEEEcCCccccceeee----------ecCCCCCeEE
Q 001403 325 TVAQTLIEGSSSPMSMDFHP-VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTAL----------VRDPGVSVNR 393 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~sp-dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~----------~~~h~~~V~~ 393 (1084)
.....+.+|.+.|.+++|+| +|++||++..| +.|+|||+.+......... ..+|...|.+
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 104 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSD---------GVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVET 104 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETT---------SCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEE
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCC---------CeEEEEECCCCcccceEeccccccccccccccCCCcEEE
Confidence 45567889999999999999 99999999888 9999999987655433211 1369999999
Q ss_pred EEEcC-CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC---CCcEEEEEEeCCCcEEEEECCCCce
Q 001403 394 VVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGDDKTIKVWDAVTGSR 469 (1084)
Q Consensus 394 v~fsp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d---~~~l~l~s~~~d~~i~vwd~~~g~~ 469 (1084)
++|+| ++.+|++++.|+.|++||+.+++... .+ .+...+.+++|++. +. ++++++.|+.|++||+.+++.
T Consensus 105 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~ 178 (408)
T 4a11_B 105 VQWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSC 178 (408)
T ss_dssp EEECTTCTTCEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCC
T ss_pred EEEccCCCcEEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcce
Confidence 99999 88899999999999999999987554 23 47788999999884 44 789999999999999999999
Q ss_pred eeEeccCCCcEEEEeecccCCCc-EEEEEecCCeEEEEECCCCCc-eEee---------------cCCCCeEEEEEEcCC
Q 001403 470 TYSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA-RVDY---------------DAPGLGCTRMAYSAN 532 (1084)
Q Consensus 470 ~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~-~~~~---------------~~~~~~i~~~~~s~d 532 (1084)
+..+.+|...|.+++|++ ++. ++++++.||.|++||++.... ...+ ..+...|.+++|+|+
T Consensus 179 ~~~~~~~~~~v~~~~~~~--~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 179 SHILQGHRQEILAVSWSP--RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp CEEECCCCSCEEEEEECS--SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred eeeecCCCCcEEEEEECC--CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence 999999999999999966 445 699999999999999987652 2222 456778999999999
Q ss_pred CCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccc--ccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcC
Q 001403 533 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 610 (1084)
Q Consensus 533 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 610 (1084)
+++|++++. ++.|++||+.+++....+..+.. ....+........+..+++++.++.|++||+.+++.+..+..
T Consensus 257 ~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 332 (408)
T 4a11_B 257 GLHLLTVGT----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG 332 (408)
T ss_dssp SSEEEEEET----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC
T ss_pred CCEEEEecC----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc
Confidence 999999986 66799999999887655543321 012222233334456777788899999999999999999986
Q ss_pred CCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCC
Q 001403 611 GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV 690 (1084)
Q Consensus 611 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~ 690 (1084)
+.. .|.+++|+|++++|++++.||.|++|++.+.+.+......... ..+. ....
T Consensus 333 ~~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~---------------------~~~~ 386 (408)
T 4a11_B 333 HYK--TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLN---------------------PAFE 386 (408)
T ss_dssp CSS--CEEEEEEETTTTEEEEEETTSCEEEEEECC---------------------------------------------
T ss_pred CCC--eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccc---------------------cccc
Confidence 654 6999999999999999999999999999988766544322211 1111 1234
Q ss_pred CccceecccCccccccce
Q 001403 691 KPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 691 ~~l~~~~~d~~i~~w~~~ 708 (1084)
..+.+.+.++.+++|+..
T Consensus 387 ~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 387 DAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ------------------
T ss_pred eeecccCccCceeecCCc
Confidence 455677788999999864
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-32 Score=304.42 Aligned_cols=290 Identities=17% Similarity=0.223 Sum_probs=244.6
Q ss_pred eecCCCCCeEEEEEcCC----CCEEEEEeCCCEEEEEEccCCccccceeeee--cccccEeEEEeecC----CCcEEEEE
Q 001403 383 LVRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAP----CKQISVIT 452 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspd----g~~las~~~dg~v~iwd~~~~~~~~~~~~l~--~h~~~V~~l~~s~d----~~~l~l~s 452 (1084)
+..+|...|.+++|+|+ ...+++++.++.|++||+.+++.+..+.... .|...|.+++|+|+ +. +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 46689999999999994 4566666677799999999887665433322 26678999999999 55 8999
Q ss_pred EeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee---cCCCCeEEEEEE
Q 001403 453 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMAY 529 (1084)
Q Consensus 453 ~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~ 529 (1084)
|+.|+.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+ ..+...|.+++|
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 999999999999999999999999999999999652 5679999999999999999988887777 678889999999
Q ss_pred cCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeec----------------------------cccccCceEEEEEcCC
Q 001403 530 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG----------------------------LQLQHNSVSVVHFDTA 581 (1084)
Q Consensus 530 s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~----------------------------~~~~~~~v~~~~~s~~ 581 (1084)
+|+++++++++. ++.|++||+.+++....+.. |. ..|.+++|+
T Consensus 170 ~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~-- 240 (366)
T 3k26_A 170 DLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHR---NYVDCVRWL-- 240 (366)
T ss_dssp CTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCS---SCCCEEEEE--
T ss_pred CCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCc---ceEEEEEEc--
Confidence 999999999986 66799999998776544433 44 889999998
Q ss_pred CCEEEEEECCCcEEEEECCCCeE--------------EEEEcCCCCCCCcceEEEecC--CCEEEEEECCCeEEEEEcCC
Q 001403 582 KDQILAAGDDHVIKIWDMNKVQL--------------LTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 582 ~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iwd~~~ 645 (1084)
++++++++.||.|++||+.++.. +..+..+.. .|.+++|+|+ +++|++++.||.|++||+.+
T Consensus 241 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 241 GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC--DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV 318 (366)
T ss_dssp TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC--CSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCC--cEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence 67999999999999999987643 666665543 5899999999 99999999999999999998
Q ss_pred CCee----eecccc--ccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccce
Q 001403 646 SNSV----DAAGVL--SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 646 ~~~~----~~~~~~--~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
++.. ..+..| ...|.+++|+ |+++++++++.||.+++||+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~v~~~~~s----------------------~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 319 EDPHKAKCTTLTHHKCGAAIRQTSFS----------------------RDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SSGGGCEEEEECCTTCCSCEEEEEEC----------------------TTSSEEEEEETTSEEEEEEC-
T ss_pred CCCccccceEEcccccCCceEEEEeC----------------------CCCCeEEEEeCCCEEEEEEec
Confidence 7543 366666 6889999887 678889999999999999974
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-31 Score=289.17 Aligned_cols=281 Identities=15% Similarity=0.174 Sum_probs=246.9
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
.+.+|...|.+++| |++++|++++.||.|++||+.+++... .+..|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV 86 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence 37889999999999 999999999999999999998876544 6778999999999999999 89999999999999
Q ss_pred ECCCC---ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcC-CCCEEEE
Q 001403 463 DAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFS 538 (1084)
Q Consensus 463 d~~~g---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~ 538 (1084)
++... +.+..+.+|...|.+++| ++.++++++.||.|++|| .......+..+...+.+++++| +++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 98754 667888999999999998 346999999999999999 5566777888899999999988 9999999
Q ss_pred EeeCCCCCeeEEEecCCCceEeeeeec-cccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCc
Q 001403 539 CGTSKEGESFLVEWNESEGAIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 617 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 617 (1084)
++. ++.|++|| .++....+.. +. ..+.+++|+|++. +++++.||.|++||+.+++.+..+..+.. .+
T Consensus 161 ~~~----d~~i~i~d--~~~~~~~~~~~~~---~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i 228 (313)
T 3odt_A 161 ASA----DKTIKLWQ--NDKVIKTFSGIHN---DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES--FV 228 (313)
T ss_dssp EET----TSCEEEEE--TTEEEEEECSSCS---SCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS--CE
T ss_pred EEC----CCCEEEEe--cCceEEEEeccCc---ccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc--eE
Confidence 886 66799999 4566666766 55 8899999999987 99999999999999999999999986644 69
Q ss_pred ceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceec
Q 001403 618 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 697 (1084)
Q Consensus 618 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 697 (1084)
.+++|+|++ .+++++.||.|++||+.+++....+..+...+.+++++ ++++ +++++
T Consensus 229 ~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~-~~~~~ 284 (313)
T 3odt_A 229 YCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCM----------------------SNGD-IIVGS 284 (313)
T ss_dssp EEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEEC----------------------TTSC-EEEEE
T ss_pred EEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEc----------------------cCCC-EEEEe
Confidence 999999999 58899999999999999999999999999999999997 4555 66788
Q ss_pred ccCccccccceeec
Q 001403 698 AENKSEVEKPLFAR 711 (1084)
Q Consensus 698 ~d~~i~~w~~~~~~ 711 (1084)
.|+.+++|++....
T Consensus 285 ~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 285 SDNLVRIFSQEKSR 298 (313)
T ss_dssp TTSCEEEEESCGGG
T ss_pred CCCcEEEEeCCCCc
Confidence 99999999987543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=309.19 Aligned_cols=314 Identities=9% Similarity=0.039 Sum_probs=246.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
-...|.+|+|||||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+.+
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------~l~gh~~~v~~V~FsPdg---------~~~~~~~~~~~- 75 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------DINCNSKNLFHVKEFPLE---------FENKLDFELAQ- 75 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------CCSSBGGGTEEEEEECCC---------CCCTTTTSCCC-
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc------eecCCCccEEEEEECCCC---------CcceEEEEeCC-
Confidence 457999999999999999999999999 766554 346999999999999998 36666666643
Q ss_pred CceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCC-----eEEEEEEcCCCCEEEEEee
Q 001403 467 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-----GCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 467 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-----~i~~~~~s~d~~~l~~~~~ 541 (1084)
+..+.++ .|...|.+++|+| +|..|++++.||.|++||.+. ....+. +.. .+.+++|||||++|++++.
T Consensus 76 ~~~~~~~-~~~~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~ 149 (588)
T 2j04_A 76 QNGLLNS-QPVCYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE 149 (588)
T ss_dssp SSCSSTT-SCSCCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET
T ss_pred CceEeec-CCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC
Confidence 2223333 4588999999955 788999999999999999544 334444 443 5999999999999999986
Q ss_pred CCCCCeeEEEecCCCceE-------eeee----eccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeE---EEE
Q 001403 542 SKEGESFLVEWNESEGAI-------KRTY----QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL---LTT 607 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~~~-------~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~---~~~ 607 (1084)
++.|++||+.++.. +..+ .+|. ..|.+++|+|+| +++++.|++|++||+.++.. ..+
T Consensus 150 ----DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~---~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~t 220 (588)
T 2j04_A 150 ----DGELQFFSIRKNSENTPEFYFESSIRLSDAGSK---DWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRM 220 (588)
T ss_dssp ----TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCC---CCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEE
T ss_pred ----CCEEEEEECCCCccccccceeeeeeeccccccc---ccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceee
Confidence 77799999998853 5665 4444 799999999998 88999999999999988773 345
Q ss_pred Ec-CCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEE--cCCCceeeeeccCceeEecC
Q 001403 608 ID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV--NPISTVTGAGIANGSVSVNE 684 (1084)
Q Consensus 608 ~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~--~p~~~~~~~~~~~~~~~~~~ 684 (1084)
+. .+. ..|.+++|+ |+.+|+++ ++.|++|+..+++......+|...+..+++ +
T Consensus 221 L~~~h~--~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s------------------- 276 (588)
T 2j04_A 221 IQNASR--RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHE------------------- 276 (588)
T ss_dssp EECCCS--SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTC-------------------
T ss_pred eccccc--CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeC-------------------
Confidence 53 333 469999999 68899887 699999999988774444479999999888 5
Q ss_pred CCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCc
Q 001403 685 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 764 (1084)
Q Consensus 685 ~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 764 (1084)
|++..+++++.+|+ ++|..+ .++++||+..+++. |+++++|+...+.
T Consensus 277 ---~d~~~La~a~edG~-klw~~d----------------------~~~~spd~~l~a~~--d~~v~lW~~~g~~----- 323 (588)
T 2j04_A 277 ---KESTILLMSNKTSY-KVLLED----------------------ELHVTADNIIAPYL--EKKFKKWSTIWNE----- 323 (588)
T ss_dssp ---SSCEEEEECSSCEE-EEEESS----------------------SEEEECCCSSHHHH--HHHHHHTTTTTTS-----
T ss_pred ---CCCCEEEEEcCCCC-EEEeec----------------------cEEECCCceEEEEc--CCEEEEEECCCCc-----
Confidence 67788899999999 999875 25699999866553 8888877653221
Q ss_pred ccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe
Q 001403 765 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 813 (1084)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s 813 (1084)
+. .+ .+...|.+++|||||+.+|+++
T Consensus 324 ------------------l~--~~---~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 324 ------------------FN--NY---ETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp ------------------SS--SS---CCEEEEEEEEECTTSSEEEEEE
T ss_pred ------------------ee--ee---ccceEEEEEEECCCCCEEEEEE
Confidence 11 01 1355689999999999999886
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-30 Score=283.68 Aligned_cols=282 Identities=15% Similarity=0.264 Sum_probs=235.3
Q ss_pred ceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEE
Q 001403 337 PMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYA 416 (1084)
Q Consensus 337 V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd 416 (1084)
..+|+|||++ +||+|. | ++|+|||+.++...... .+.+|...|.+++|+|+|++||+|+.|++|++||
T Consensus 28 ~~~l~WS~~~-~lAvg~-D---------~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~ 95 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-D---------NSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD 95 (318)
T ss_dssp CBCEEECTTS-EEEEEE-T---------TEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-C---------CEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCCEEEEEECCCcEEEee
Confidence 5789999997 788763 5 99999999987654332 2567889999999999999999999999999999
Q ss_pred ccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-ceeeEeccCCCcEEEEeecccCCCcEEE
Q 001403 417 YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPHAKENIHFIF 495 (1084)
Q Consensus 417 ~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g-~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 495 (1084)
+.+++.+. .+.+|...+.++.+ ++. .+++++.++.+++|+..++ ..+..+.+|...+..+.+.+ ++.+++
T Consensus 96 ~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ 166 (318)
T 4ggc_A 96 VQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP--DGRHLA 166 (318)
T ss_dssp TTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT--TSSEEE
T ss_pred cCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC--CCCEEE
Confidence 99997665 67899988877655 456 7999999999999998876 45677899999999999954 668999
Q ss_pred EEecCCeEEEEECCCCCc----eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccC
Q 001403 496 SISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN 571 (1084)
Q Consensus 496 s~s~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~ 571 (1084)
+++.||.|++||+.+++. ......+...+.+++++|++..++.... +..++.|++||............. .
T Consensus 167 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~~~~----~ 241 (318)
T 4ggc_A 167 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAVDAH----S 241 (318)
T ss_dssp EEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEEECS----S
T ss_pred EEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccccce----e
Confidence 999999999999987653 3445667778999999998765543322 133678999999988877665543 5
Q ss_pred ceEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 572 SVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 572 ~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
.+..+.|+|+++.+++++ .|+.|++||+.+++++..+.+|.. .|.+++|+|++++|++++.||+|+|||+.+.
T Consensus 242 ~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~--~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 242 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 799999999999988765 799999999999999999987654 6999999999999999999999999998754
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=299.05 Aligned_cols=292 Identities=13% Similarity=0.165 Sum_probs=240.4
Q ss_pred eecCCCCCeEEEEEcCCCCEEE-EEeC---CCEEEEEEccCCccccceeeeecccccEeEEEeecC---CCcEEEEEEeC
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLG-VAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGD 455 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~la-s~~~---dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d---~~~l~l~s~~~ 455 (1084)
++.+|...|.+++|+|++..++ +++. |+.|+|||+.+++.... ...+|...|.+++|+|+ +. ++++++.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~~ 88 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGDF 88 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEET
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEecC
Confidence 4677999999999999997665 5554 89999999998875432 23379999999999999 57 7999999
Q ss_pred CCcEEEEECCCCc-eeeEeccCCCcEEEEeecc----cCCCcEEEEEecCCeEEEEECCCCC-ceEeecCCCC----eEE
Q 001403 456 DKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHA----KENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGL----GCT 525 (1084)
Q Consensus 456 d~~i~vwd~~~g~-~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~----~i~ 525 (1084)
|+.|++||+.+++ .+..+.+|...|.++.|.+ ++++.+|++++.||.|++||+.... ....+..+.. .+.
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 9999999999998 8899999999999997643 5678899999999999999999876 5555554443 788
Q ss_pred EEE----EcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcC---CCCEEEEEECCCcEEEEE
Q 001403 526 RMA----YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT---AKDQILAAGDDHVIKIWD 598 (1084)
Q Consensus 526 ~~~----~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd 598 (1084)
+++ |+|+++++++++. ++.|++||+++++.... ..+. ..+.+++|+| ++.++++++.||.|++||
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d 240 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNIK---NGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240 (357)
T ss_dssp EEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EECS---SCEEEEEESCSSSSCCEEEEEESTTEEEEEE
T ss_pred EEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCCC---CceEEEEcCCCCCCCCEEEEECCCCeEEEEe
Confidence 888 7899999999975 67799999999987544 4444 7899999999 999999999999999999
Q ss_pred CCCCeEEEEEc---CCCCCCCcceEEEecCCC-EEEEEECCCeEEEEEcCCC-------------------Ceeeecccc
Q 001403 599 MNKVQLLTTID---AGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES-------------------NSVDAAGVL 655 (1084)
Q Consensus 599 ~~~~~~~~~~~---~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~~~ 655 (1084)
+.+++....+. ...+...|.+++|+|+++ ++++++.||.|++||+..+ +.+..+..|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (357)
T 3i2n_A 241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS 320 (357)
T ss_dssp EEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC
T ss_pred CcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC
Confidence 98766544333 112344699999999998 8999999999999999854 345667778
Q ss_pred ccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccc-eecccCccccccce
Q 001403 656 SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI-SVEAENKSEVEKPL 708 (1084)
Q Consensus 656 ~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~d~~i~~w~~~ 708 (1084)
...|.+++|+ |++++++ +++.|+.+++|++.
T Consensus 321 ~~~v~~~~~s----------------------~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 321 TQPISSLDWS----------------------PDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp SSCEEEEEEC----------------------SSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCeeEEEEc----------------------CCCCeEEEEecCCCcEEEEECC
Confidence 8888888887 6788887 89999999999986
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-31 Score=308.40 Aligned_cols=293 Identities=12% Similarity=0.191 Sum_probs=233.9
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccc-------cc-eeeeecCCC------------CCe
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSM-------LF-KTALVRDPG------------VSV 391 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~-------~~-~~~~~~~h~------------~~V 391 (1084)
.|.+.|.+++|||||++||+|..| +.|+|||+.+... .+ ....+.+|. ..|
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~d---------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKG---------GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETT---------SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCC---------CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCce
Confidence 457799999999999999999888 9999999987652 11 123477898 889
Q ss_pred EEEEEcCCC--CEEEEEeCCCEEEEEEccCCcccc------------------------------------ce-eeeecc
Q 001403 392 NRVVWSPDG--SLLGVAYSKHIVQLYAYHGGSDAR------------------------------------QQ-LEIDAH 432 (1084)
Q Consensus 392 ~~v~fspdg--~~las~~~dg~v~iwd~~~~~~~~------------------------------------~~-~~l~~h 432 (1084)
.+++|+|++ .+|++++.|++|++||+.+++... .. ....+|
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 999999998 899999999999999998744210 00 113589
Q ss_pred cccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC-Cceee-------EeccCCCcEEEEeecccCCC-cEEEEEecCCeE
Q 001403 433 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTY-------SFEGHGAPVYSLCPHAKENI-HFIFSISVDGKI 503 (1084)
Q Consensus 433 ~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~-g~~~~-------~~~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i 503 (1084)
...|.+++|+|+++ +|++| .|++|++||+++ +..+. .+.+|...|.+++|+| ++ .+|++++.||.|
T Consensus 177 ~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 177 TYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGTI 251 (447)
T ss_dssp SSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSCE
T ss_pred CcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCeE
Confidence 99999999999999 78888 799999999984 44444 3678999999999965 55 799999999999
Q ss_pred EEEECCCCCc----eEeecCCCC------------eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-ceEeeeeecc
Q 001403 504 KAWLYDSLGA----RVDYDAPGL------------GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGL 566 (1084)
Q Consensus 504 ~iwd~~~~~~----~~~~~~~~~------------~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~ 566 (1084)
++||+++... ...+..+.. .|.+++|+|+|++|++++ ++.|++||+.+ ++.+..+.+|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceeecc
Confidence 9999998776 567777765 899999999999999886 26799999997 8888888887
Q ss_pred ccccC------------ceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC-----------------------
Q 001403 567 QLQHN------------SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----------------------- 611 (1084)
Q Consensus 567 ~~~~~------------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------- 611 (1084)
..... .+..++|+|++++|++|+.||.|++||+.+++.+......
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 62111 1334899999999999999999999999998876432111
Q ss_pred -------CCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 612 -------GGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 612 -------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
.....|..++|+|++++||+++.++ +++|...
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 1123578899999999999998865 7787644
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=297.37 Aligned_cols=253 Identities=15% Similarity=0.195 Sum_probs=206.1
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC--CCCEEEE
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGV 405 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~las 405 (1084)
.++.+|.+.|.+++|+|||++||+++.| ++|+|||+.++..... ..+.+|...|.+++|+| ++++||+
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D---------~~v~lwd~~~~~~~~~-~~l~gH~~~V~~v~~~~~~~~~~l~s 76 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSD---------RSVKIFDVRNGGQILI-ADLRGHEGPVWQVAWAHPMYGNILAS 76 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETT---------TEEEEEEEETTEEEEE-EEEECCSSCEEEEEECCGGGSSCEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCC---------CeEEEEEecCCCcEEE-EEEcCCCccEEEEEeCCCCCCCEEEE
Confidence 4567999999999999999999999998 9999999987643222 23789999999999986 4899999
Q ss_pred EeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC--CCcEEEEEEeCCCcEEEEECCCCce---eeEeccCCCcE
Q 001403 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPV 480 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~l~s~~~d~~i~vwd~~~g~~---~~~~~~h~~~v 480 (1084)
|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++|+.|++|++||+.++.. ...+.+|...|
T Consensus 77 ~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v 153 (316)
T 3bg1_A 77 CSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGC 153 (316)
T ss_dssp EETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCB
T ss_pred EECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeeccccCCc
Confidence 999999999999987422 23367789999999999998 66 799999999999999987632 45567899999
Q ss_pred EEEeecccC---------------CCcEEEEEecCCeEEEEECCCCC---ceEeecCCCCeEEEEEEcCCC----CEEEE
Q 001403 481 YSLCPHAKE---------------NIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSANG----RRLFS 538 (1084)
Q Consensus 481 ~~~~~~~~~---------------~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~s~d~----~~l~~ 538 (1084)
.+++|+|.. ++.+|++++.|++|++||++... ....+..|...|.+++|+|++ ++|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las 233 (316)
T 3bg1_A 154 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS 233 (316)
T ss_dssp CCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEE
T ss_pred ceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEE
Confidence 999997642 14689999999999999997553 455677888999999999987 88999
Q ss_pred EeeCCCCCeeEEEecCCCc---e-EeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 001403 539 CGTSKEGESFLVEWNESEG---A-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 600 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~~~---~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 600 (1084)
++. ++.|++||+.+. . ....+..|. ..|.+++|+|++++|++++.||+|++|+..
T Consensus 234 ~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~---~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 234 CSQ----DGRVFIWTCDDASSNTWSPKLLHKFN---DVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EET----TCEEEEEECSSTTCCCCBCCEEEECS---SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EcC----CCeEEEEEccCccccchhhhhhhcCC---CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 886 778999998763 1 123344555 789999999999999999999999999975
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-31 Score=300.72 Aligned_cols=281 Identities=19% Similarity=0.234 Sum_probs=242.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001403 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 469 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~ 469 (1084)
....|+||++ ++||+|. |++|+|||+.+|+..+.+ .+.+|...|++|+|+|+|+ +|++|+.|++|++||+++++.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~-~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEE-EecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence 4677999986 4787775 899999999999865532 4568888999999999999 899999999999999999999
Q ss_pred eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc-eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCee
Q 001403 470 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 548 (1084)
Q Consensus 470 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 548 (1084)
+..+.+|...+.++++ ++.++++++.|+.+++||...... ...+..+...+..+.++|+++++++++. ++.
T Consensus 182 ~~~~~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~----D~~ 253 (420)
T 4gga_A 182 LRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNL 253 (420)
T ss_dssp EEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSC
T ss_pred EEEEeCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec----ccc
Confidence 9999999999999987 346999999999999999987554 4567889999999999999999999986 667
Q ss_pred EEEecCCCceE----eeeeeccccccCceEEEEEcCCCCE-EEE--EECCCcEEEEECCCCeEEEEEcCCCCCCCcceEE
Q 001403 549 LVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQ-ILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 621 (1084)
Q Consensus 549 i~~wd~~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~-l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 621 (1084)
+.+|+..+++. +.....|. ..|.+++|+|++.. +++ |+.|++|++||+.+++....+..+.. +.++.
T Consensus 254 v~i~~~~~~~~~~~~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~---v~~~~ 327 (420)
T 4gga_A 254 VNVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ---VCSIL 327 (420)
T ss_dssp EEEEESSCCSSCSCCSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSC---EEEEE
T ss_pred ceEEeeccccccceeeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccc---eeeee
Confidence 99999987653 34445555 88999999997654 444 34799999999999999999876543 88999
Q ss_pred EecCCCEEEEEE--CCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceeccc
Q 001403 622 FNKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 699 (1084)
Q Consensus 622 ~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 699 (1084)
|+|+++.+++++ .|+.|+|||+.+++.+..+.+|...|.+++|+ |+|+++++++.|
T Consensus 328 ~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D 385 (420)
T 4gga_A 328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAAD 385 (420)
T ss_dssp EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecC
Confidence 999999998876 68999999999999999999999999999997 678899999999
Q ss_pred Cccccccceeec
Q 001403 700 NKSEVEKPLFAR 711 (1084)
Q Consensus 700 ~~i~~w~~~~~~ 711 (1084)
++|++|++....
T Consensus 386 ~tvriWdv~~~~ 397 (420)
T 4gga_A 386 ETLRLWRCFELD 397 (420)
T ss_dssp TEEEEECCSCSS
T ss_pred CeEEEEECCCCC
Confidence 999999986443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-31 Score=294.98 Aligned_cols=286 Identities=9% Similarity=0.074 Sum_probs=243.5
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCC-EEEEE
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLGVA 406 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~-~las~ 406 (1084)
....+|.+.|.+++|+|||++||++..| +.|+|||+.+.........+.+|...|.+++|+|+++ +|+++
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d---------~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 75 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWD---------GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETT---------SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCC---------CeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEE
Confidence 3456899999999999999999999888 9999999987663222233557999999999999999 99999
Q ss_pred eCCCEEEEEEc-cCCccccceeeeec--ccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC---------CceeeEec
Q 001403 407 YSKHIVQLYAY-HGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---------GSRTYSFE 474 (1084)
Q Consensus 407 ~~dg~v~iwd~-~~~~~~~~~~~l~~--h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~---------g~~~~~~~ 474 (1084)
+.||.|++||+ .+++. ..+.+ |...|.+++|+| +. ++++++.|+.|++||+++ ++++..+.
T Consensus 76 ~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 148 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK 148 (342)
T ss_dssp ETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred cCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCeeeEEe
Confidence 99999999999 88753 35778 999999999999 77 899999999999999988 77777777
Q ss_pred cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCC-CCc--eEeecCCCCeEEEEEEcC-CCCEEEEEeeCCCCCeeEE
Q 001403 475 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGA--RVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLV 550 (1084)
Q Consensus 475 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~ 550 (1084)
|...|.+++|++ ++ +++++.||.|++||++. ... ......+...+.+++|+| +++++++++. ++.|.
T Consensus 149 -~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----dg~i~ 219 (342)
T 1yfq_A 149 -VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----DGRVA 219 (342)
T ss_dssp -SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----TSEEE
T ss_pred -eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec----CCcEE
Confidence 899999999954 43 99999999999999988 443 334556677899999999 9999999986 67799
Q ss_pred EecCCCc------eEeeeeecccc------ccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC-CCCCCc
Q 001403 551 EWNESEG------AIKRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPEN 617 (1084)
Q Consensus 551 ~wd~~~~------~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v 617 (1084)
+|++..+ +....+..|.. +...|.+++|+|++++|++++.||.|++||+.+++.+..+..+ .. .|
T Consensus 220 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~--~v 297 (342)
T 1yfq_A 220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED--SV 297 (342)
T ss_dssp EEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS--EE
T ss_pred EEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC--Cc
Confidence 9999887 77778887751 1248999999999999999999999999999999999988765 43 58
Q ss_pred ceEEEecCCCEEEEEECCCe-EEEEE
Q 001403 618 PRICFNKNGTLLAVIANENR-IKILE 642 (1084)
Q Consensus 618 ~~v~~s~~~~~l~~~~~dg~-i~iwd 642 (1084)
.+++ |++++|++++.||. .+.+.
T Consensus 298 ~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 298 VKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred eEec--CCCCeEEEEecCCccccccc
Confidence 8888 99999999999998 44444
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=310.45 Aligned_cols=240 Identities=13% Similarity=0.111 Sum_probs=198.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCC--ccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEEC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG--SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 464 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~--~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~ 464 (1084)
|...|.+++|+|||++||+++.|+.|+|||+.++ +.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYEK 84 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC--
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEEc
Confidence 6789999999999999999999999999999987 4444 6779999999999999999 7999999999999999
Q ss_pred CCCc---eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc---eEeecC-CCCeEEEEEEcCCCCEEE
Q 001403 465 VTGS---RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDA-PGLGCTRMAYSANGRRLF 537 (1084)
Q Consensus 465 ~~g~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~-~~~~i~~~~~s~d~~~l~ 537 (1084)
.++. ....+.+|...|.+++|++ ++.+|++++.||.|++||++..+. ...+.. +...|.+++|+|++++|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 162 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLA 162 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred CCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEE
Confidence 9987 6778889999999999965 678999999999999999998763 556666 888999999999999999
Q ss_pred EEeeCCCCCeeEEEecCC------------------CceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 001403 538 SCGTSKEGESFLVEWNES------------------EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 599 (1084)
Q Consensus 538 ~~~~~~~~~~~i~~wd~~------------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 599 (1084)
+++. ++.|++||+. .++.+..+ +|. ..|.+++|+|++++|++++.||.|++||+
T Consensus 163 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~~~~~d~~i~iwd~ 234 (377)
T 3dwl_C 163 AGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG---GWVHAVGFSPSGNALAYAGHDSSVTIAYP 234 (377)
T ss_dssp EEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS---SSEEEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred EEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC---ceEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 9986 6679999985 35566666 555 88999999999999999999999999999
Q ss_pred CCCeE----EEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 600 NKVQL----LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 600 ~~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
.+++. +..+..+.. .|.+++|+|++++|++++.++.+ +|+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 235 SAPEQPPRALITVKLSQL--PLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CSTTSCEEECCCEECSSS--CEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 99887 566665543 68999999999999998877666 66654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-31 Score=293.28 Aligned_cols=251 Identities=18% Similarity=0.320 Sum_probs=205.5
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC--CCcEEEEEEeCCCcEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 460 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~l~s~~~d~~i~ 460 (1084)
++.+|...|++++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 36789999999999999999999999999999999887531 23368899999999999864 67 799999999999
Q ss_pred EEECCCCc--eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc---eEeecCCCCeEEEEEEcCC---
Q 001403 461 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSAN--- 532 (1084)
Q Consensus 461 vwd~~~g~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d--- 532 (1084)
+||++++. .+..+.+|...|.+++|+|..++.+|++++.||.|++||+..... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99999874 567888999999999998876678999999999999999987643 2345567778999999998
Q ss_pred --------------CCEEEEEeeCCCCCeeEEEecCCCc---eEeeeeeccccccCceEEEEEcCCC----CEEEEEECC
Q 001403 533 --------------GRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDD 591 (1084)
Q Consensus 533 --------------~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d 591 (1084)
+++|++++. ++.|++||+.++ +.+..+.+|. ..|.+++|+|++ .+|++++.|
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~---~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHS---DWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCS---SCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCC---CceEEEEecCCCCCCCceEEEEcCC
Confidence 468888875 677999999755 4666777777 899999999986 889999999
Q ss_pred CcEEEEECCCC---e-EEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 592 HVIKIWDMNKV---Q-LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 592 g~i~iwd~~~~---~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
|+|++|++.+. . ....+..+ ...|.+++|+|++++|++++.|+.|++|+...
T Consensus 238 ~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 238 GRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 99999998762 1 11222223 34689999999999999999999999999763
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-30 Score=292.66 Aligned_cols=296 Identities=16% Similarity=0.200 Sum_probs=242.4
Q ss_pred CccceeeecccCCCCceEEEEcCC---CceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC
Q 001403 322 FPKTVAQTLIEGSSSPMSMDFHPV---QHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 398 (1084)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spd---g~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp 398 (1084)
.|...++.+.+|.+.|.+++|+|+ |++||++..| +.|+|||+.+...... ..+.+|...|.+++|+|
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~d---------g~i~iw~~~~~~~~~~-~~~~~h~~~v~~~~~~~ 96 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWA---------NDVRCWEVQDSGQTIP-KAQQMHTGPVLDVCWSD 96 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETT---------SEEEEEEECTTSCEEE-EEEEECSSCEEEEEECT
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCC---------CcEEEEEcCCCCceeE-EEeccccCCEEEEEECc
Confidence 455677889999999999999999 6999999888 9999999987433332 23677999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEe--ecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccC
Q 001403 399 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF--SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 476 (1084)
Q Consensus 399 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~--s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h 476 (1084)
++++|++++.||.|++||+.+++... +.+|...|.+++| ++++. ++++++.|+.|++||+++++.+..+..|
T Consensus 97 ~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 170 (368)
T 3mmy_A 97 DGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSNPMMVLQLP 170 (368)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSSCSEEEECS
T ss_pred CCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCcEEEEEecC
Confidence 99999999999999999999986543 5679999999999 88888 8999999999999999999999999876
Q ss_pred CCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec--CCCCeEEEEEEcCCCCE----EEEEeeCCCCCeeEE
Q 001403 477 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRR----LFSCGTSKEGESFLV 550 (1084)
Q Consensus 477 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~d~~~----l~~~~~~~~~~~~i~ 550 (1084)
. .+.++.+.. ..+++++.++.+++|+++......... .......++++.++... +++++. ++.|+
T Consensus 171 ~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----dg~i~ 241 (368)
T 3mmy_A 171 E-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI----EGRVA 241 (368)
T ss_dssp S-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET----TSEEE
T ss_pred C-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC----CCcEE
Confidence 5 566666532 478999999999999998766544332 23345666666665544 777775 77799
Q ss_pred EecCCCc---eEeeeeeccccc---------cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcc
Q 001403 551 EWNESEG---AIKRTYQGLQLQ---------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 618 (1084)
Q Consensus 551 ~wd~~~~---~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 618 (1084)
+||+... .....+.+|... ...|.+++|+|++++|++++.||.|++||+.+++.+..+..+.. .|.
T Consensus 242 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~ 319 (368)
T 3mmy_A 242 IHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ--PIS 319 (368)
T ss_dssp EEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS--CEE
T ss_pred EEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC--Cce
Confidence 9999987 556677776610 11699999999999999999999999999999999998886544 699
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 619 RICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 619 ~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
+++|+|++++|++++.|+..+.|+..
T Consensus 320 ~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 320 ACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp EEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred EEEECCCCCeEEEEeccccccccccc
Confidence 99999999999999998755554433
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=3.8e-30 Score=297.11 Aligned_cols=278 Identities=22% Similarity=0.341 Sum_probs=239.7
Q ss_pred cccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 001403 330 LIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 409 (1084)
Q Consensus 330 l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d 409 (1084)
..+|...|.+++| ||++||+|..| ++|+|||+.++.... .+.+|...|.+++| ++++|++|+.|
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~d---------g~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~~l~sg~~d 192 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRD---------NTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DERVIITGSSD 192 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESS---------SCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSSEEEEEETT
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCC---------CeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCCEEEEEcCC
Confidence 3467777888877 89999999888 999999998876543 37789999999999 78999999999
Q ss_pred CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee---eEeccCCCcEEEEeec
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---YSFEGHGAPVYSLCPH 486 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~---~~~~~h~~~v~~~~~~ 486 (1084)
|+|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.|+.|++||+.++... ..+.+|...|.++++
T Consensus 193 g~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 193 STVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp SCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred CeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence 999999999997655 6789999999999974 4 7999999999999999988766 677899999999998
Q ss_pred ccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecc
Q 001403 487 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 566 (1084)
Q Consensus 487 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 566 (1084)
++.++++++.||.|++||+.+.+....+..+...+.++++ +++++++++. ++.|++||+.+++.+..+.+|
T Consensus 265 ---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~~~~~~~~h 335 (435)
T 1p22_A 265 ---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLRVLEGH 335 (435)
T ss_dssp ---ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCCEEEEECCC
T ss_pred ---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCCEEEEEeCC
Confidence 4579999999999999999999999999999999999998 5789999886 667999999999999999988
Q ss_pred ccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCe---------EEEEEcCCCCCCCcceEEEecCCCEEEEEECCCe
Q 001403 567 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------LLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 637 (1084)
Q Consensus 567 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 637 (1084)
. ..|.+++| ++.++++|+.||.|++||+.++. .+..+..+.. .|.+++| ++.+|++++.||.
T Consensus 336 ~---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~l~s~s~Dg~ 406 (435)
T 1p22_A 336 E---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQIVSSSHDDT 406 (435)
T ss_dssp S---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CSSCEEECCSSSE
T ss_pred c---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC--CeEEEEe--CCCEEEEEeCCCE
Confidence 8 88999998 78899999999999999997766 7777776644 6899999 7889999999999
Q ss_pred EEEEEcCCCCee
Q 001403 638 IKILETPESNSV 649 (1084)
Q Consensus 638 i~iwd~~~~~~~ 649 (1084)
|++||+.+....
T Consensus 407 i~iwd~~~~~~~ 418 (435)
T 1p22_A 407 ILIWDFLNDPAA 418 (435)
T ss_dssp EEEEC-------
T ss_pred EEEEECCCCCCc
Confidence 999999876443
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=293.52 Aligned_cols=282 Identities=15% Similarity=0.154 Sum_probs=241.1
Q ss_pred CCCCC--eEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeee-cccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 386 DPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 386 ~h~~~--V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
+|... +.+++|++ ..+++++.|+.|++||+.+++... .+. .|...|.+++|+|+++ +|++|+.||.|++|
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~---~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw 161 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSA---LAETDESTYVASVKWSHDGS--FLSVGLGNGLVDIY 161 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEE---EEECCTTCCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeE---eeecCCCCCEEEEEECCCCC--EEEEECCCCeEEEE
Confidence 45444 44566664 668889999999999999987654 233 3889999999999999 89999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCC-CCceEeecCCCCeEEEEEEcCCCCEEEEEee
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 541 (1084)
|+.+++.+..+.+|...|.+++| ++.++++++.||.|++||++. ......+..+...|.+++|+|+++++++++.
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 237 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN 237 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred ECcCCeEEEEecCCCCceEEEEE----CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence 99999999999999999999999 336999999999999999994 5556778889999999999999999999986
Q ss_pred CCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCE-EEEEE--CCCcEEEEECCCCeEEEEEcCCCCCCCcc
Q 001403 542 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENP 618 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 618 (1084)
++.|++||+.+++.+..+..|. ..|.+++|+|++.. +++++ .|+.|++||+.+++.+..+..+. .+.
T Consensus 238 ----d~~v~iwd~~~~~~~~~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~---~v~ 307 (401)
T 4aez_A 238 ----DNVVQIWDARSSIPKFTKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS---QVT 307 (401)
T ss_dssp ----TSCEEEEETTCSSEEEEECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSS---CEE
T ss_pred ----CCeEEEccCCCCCccEEecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCC---cEE
Confidence 6679999999999998888887 89999999998754 45554 69999999999999999887443 489
Q ss_pred eEEEecCCCEEEEEE--CCCeEEEEEcCCCCeee--eccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccc
Q 001403 619 RICFNKNGTLLAVIA--NENRIKILETPESNSVD--AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 694 (1084)
Q Consensus 619 ~v~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 694 (1084)
+++|+|+++++++++ .||.|++|++.++.... .+.+|...|.+++++ |++.+++
T Consensus 308 ~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l~ 365 (401)
T 4aez_A 308 SLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS----------------------PDGRILS 365 (401)
T ss_dssp EEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC----------------------TTSSEEE
T ss_pred EEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC----------------------CCCCEEE
Confidence 999999999999954 89999999999865444 356888899988887 6788899
Q ss_pred eecccCccccccceee
Q 001403 695 SVEAENKSEVEKPLFA 710 (1084)
Q Consensus 695 ~~~~d~~i~~w~~~~~ 710 (1084)
+++.|+.+++|++..+
T Consensus 366 s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 366 TAASDENLKFWRVYDG 381 (401)
T ss_dssp EECTTSEEEEEECCC-
T ss_pred EEeCCCcEEEEECCCC
Confidence 9999999999998744
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=279.55 Aligned_cols=277 Identities=19% Similarity=0.256 Sum_probs=236.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001403 391 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 470 (1084)
Q Consensus 391 V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~ 470 (1084)
..+|+||+++ +||+|. |++|+|||+.+++.++.+ .+.+|...|++++|+|+++ ++++|+.|++|++||+++++.+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCceeE
Confidence 5679999986 777764 899999999999876533 4568889999999999999 8999999999999999999999
Q ss_pred eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc-eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeE
Q 001403 471 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 549 (1084)
Q Consensus 471 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 549 (1084)
..+.+|...+.++.+ ++..+++++.++.+++|+...... ...+..+...+..+.++++++++++++. ++.|
T Consensus 103 ~~~~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i 174 (318)
T 4ggc_A 103 RNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNLV 174 (318)
T ss_dssp EEEECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EEecCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec----Ccce
Confidence 999999999988766 346899999999999999887654 4567888889999999999999999986 6679
Q ss_pred EEecCCCceEe----eeeeccccccCceEEEEEcCCCCEEE---EEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEE
Q 001403 550 VEWNESEGAIK----RTYQGLQLQHNSVSVVHFDTAKDQIL---AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 622 (1084)
Q Consensus 550 ~~wd~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~---~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 622 (1084)
++||+.+++.. .....+. ..|..+.++|++..++ +++.++.|++||.............. .+..+.|
T Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~---~v~~~~~ 248 (318)
T 4ggc_A 175 NVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSILW 248 (318)
T ss_dssp EEEESSCBTTBSCCSEEECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS---CEEEEEE
T ss_pred eEEECCCCcccccceeeecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee---eeeeeee
Confidence 99999887543 2233333 7899999999876443 45688999999999988877765443 4889999
Q ss_pred ecCCCEEEEEE--CCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccC
Q 001403 623 NKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 700 (1084)
Q Consensus 623 s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 700 (1084)
+|++..+++++ .|+.|++||+.+++.+..+.+|.+.|++++|+ |+++++++++.|+
T Consensus 249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D~ 306 (318)
T 4ggc_A 249 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAADE 306 (318)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETTT
T ss_pred cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecCC
Confidence 99999888765 68999999999999999999999999999997 6788999999999
Q ss_pred ccccccce
Q 001403 701 KSEVEKPL 708 (1084)
Q Consensus 701 ~i~~w~~~ 708 (1084)
+|++|++.
T Consensus 307 ~v~iWd~~ 314 (318)
T 4ggc_A 307 TLRLWRCF 314 (318)
T ss_dssp EEEEECCS
T ss_pred eEEEEECC
Confidence 99999975
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=288.03 Aligned_cols=306 Identities=11% Similarity=0.122 Sum_probs=228.5
Q ss_pred eeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccc-eeeeecCCCCCeEEEEEcC--CCCEE
Q 001403 327 AQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLF-KTALVRDPGVSVNRVVWSP--DGSLL 403 (1084)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~-~~~~~~~h~~~V~~v~fsp--dg~~l 403 (1084)
.+.+.+|.+.|.+++|+|||++||++..| +.|+|||+.+..... ....+.+|...|.+++|+| |+++|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l 74 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSD---------QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRII 74 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETT---------SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCC---------CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEE
Confidence 45678999999999999999999999888 999999998754332 2234678999999999999 69999
Q ss_pred EEEeCCCEEEEEEccCCccc------cceeeeecccccEeEEEeecC--CCcEEEEEEeCCCcEEEEECCCCceeeEec-
Q 001403 404 GVAYSKHIVQLYAYHGGSDA------RQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSRTYSFE- 474 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~------~~~~~l~~h~~~V~~l~~s~d--~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~- 474 (1084)
++++.||.|++||+.+++.. .....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.+++.+..+.
T Consensus 75 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~ 152 (351)
T 3f3f_A 75 ASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLRSWTL 152 (351)
T ss_dssp EEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTTCCEE
T ss_pred EEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhccccc
Confidence 99999999999999987421 234467799999999999999 88 89999999999999999887665443
Q ss_pred ------------cCCCcEEEEeeccc-CCCcEEEEEecCCeEEEEECCCCCc--eEeecCCCCeEEEEEEcCCC----CE
Q 001403 475 ------------GHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG----RR 535 (1084)
Q Consensus 475 ------------~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d~----~~ 535 (1084)
+|...+.+++|+|. .++..+++++.++.+.+|+...... ...+..+...|.+++|+|++ ++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~ 232 (351)
T 3f3f_A 153 TSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQL 232 (351)
T ss_dssp EEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEE
T ss_pred cccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceE
Confidence 68889999999764 1257999999999998888777665 55667788899999999998 78
Q ss_pred EEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEE----ECCCcEEEEECCCCeEEEEEcCC
Q 001403 536 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA----GDDHVIKIWDMNKVQLLTTIDAG 611 (1084)
Q Consensus 536 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~ 611 (1084)
|++++. ++.|++||+.++.......... ........++....+..+ .....+.+|+....+.+..+..|
T Consensus 233 l~s~~~----dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 305 (351)
T 3f3f_A 233 IATGCK----DGRIRIFKITEKLSPLASEESL---TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH 305 (351)
T ss_dssp EEEEET----TSCEEEEEEEECC------------------------------------------CCSEEEEEEEEECTT
T ss_pred EEEEcC----CCeEEEEeCCCCcCccccCCcc---cceeccCCCcccccccccccccccceeeeecccccccEEEEEecc
Confidence 998876 6679999998775544433322 233333344443333333 34455667777777788888765
Q ss_pred CCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeec
Q 001403 612 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 652 (1084)
Q Consensus 612 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 652 (1084)
.. .|.+++|+|++++|++++.||.|++|++.+++.+..+
T Consensus 306 ~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 306 NG--EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp SS--CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred cc--cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 44 6999999999999999999999999999988665544
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=300.06 Aligned_cols=253 Identities=14% Similarity=0.227 Sum_probs=207.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCcc--------ccceeeeeccc------------ccEeEEEeecCC-
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHV------------GNVNDLAFSAPC- 445 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~--------~~~~~~l~~h~------------~~V~~l~~s~d~- 445 (1084)
|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. +.|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 678999999999999999999999999999998752 11244678998 889999999998
Q ss_pred -CcEEEEEEeCCCcEEEEECCCCcee---------------------------------------eE-eccCCCcEEEEe
Q 001403 446 -KQISVITCGDDKTIKVWDAVTGSRT---------------------------------------YS-FEGHGAPVYSLC 484 (1084)
Q Consensus 446 -~~l~l~s~~~d~~i~vwd~~~g~~~---------------------------------------~~-~~~h~~~v~~~~ 484 (1084)
. .+++++.|++|++||+.++... .. ..+|...|.+++
T Consensus 107 ~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 107 AA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp SS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred cc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 5 7999999999999998765432 12 367999999999
Q ss_pred ecccCCCcEEEEEecCCeEEEEECCCCCceEe--------ecCCCCeEEEEEEcCCC-CEEEEEeeCCCCCeeEEEecCC
Q 001403 485 PHAKENIHFIFSISVDGKIKAWLYDSLGARVD--------YDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNES 555 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--------~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~~wd~~ 555 (1084)
|++ ++.+|+++ .||.|++||++....... +..+...|.+++|+|++ +++++++. ++.|++||++
T Consensus 185 ~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~~ 257 (447)
T 3dw8_B 185 INS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDMR 257 (447)
T ss_dssp ECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEETT
T ss_pred EcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEECc
Confidence 965 67899998 799999999985443332 45677899999999999 99999986 6679999999
Q ss_pred CceE----eeeeecccc---------ccCceEEEEEcCCCCEEEEEECCCcEEEEECCC-CeEEEEEcCCCCCCC-----
Q 001403 556 EGAI----KRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPE----- 616 (1084)
Q Consensus 556 ~~~~----~~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~----- 616 (1084)
+++. +..+..+.. +...|.+++|+|++++|++++. +.|++||+.+ ++.+..+..+.....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 336 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL 336 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence 9886 677777660 0128999999999999999999 9999999997 888888876643111
Q ss_pred --------cceEEEecCCCEEEEEECCCeEEEEEcCCCCee
Q 001403 617 --------NPRICFNKNGTLLAVIANENRIKILETPESNSV 649 (1084)
Q Consensus 617 --------v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 649 (1084)
+..++|+|++++|++++.||.|++||+.+++.+
T Consensus 337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 234999999999999999999999999988665
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=293.11 Aligned_cols=274 Identities=16% Similarity=0.243 Sum_probs=239.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEEC
Q 001403 385 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 464 (1084)
Q Consensus 385 ~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~ 464 (1084)
.+|...|.+++| |+++|++|+.||.|++||+.+++... .+.+|.+.|.+++| +++ ++++|+.||+|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 347778988877 79999999999999999999987655 67899999999999 677 8999999999999999
Q ss_pred CCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCce---EeecCCCCeEEEEEEcCCCCEEEEEee
Q 001403 465 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 465 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~d~~~l~~~~~ 541 (1084)
.+++.+..+.+|...|.+++|+ +..+++++.||.|++||+.+.... ..+..+...|.+++| +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 9999999999999999999984 359999999999999999987765 567788889999998 7889999886
Q ss_pred CCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEE
Q 001403 542 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 621 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 621 (1084)
++.|++||+.+++.+..+.+|. ..+.++.| +++.+++|+.||.|++||+.+++.+..+..+.. .|.+++
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~ 343 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIR 343 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCS---SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEE
T ss_pred ----CCeEEEEECCcCcEEEEEcCCC---CcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--cEEEEE
Confidence 6779999999999999999888 88999988 468999999999999999999999999986644 588888
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCC---------eeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCc
Q 001403 622 FNKNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 692 (1084)
Q Consensus 622 ~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~ 692 (1084)
| ++.++++++.||.|++||+.++. .+..+.+|...|.++++. +..
T Consensus 344 ~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------------------------~~~ 397 (435)
T 1p22_A 344 F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EFQ 397 (435)
T ss_dssp C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SSC
T ss_pred e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC------------------------CCE
Confidence 8 78999999999999999997665 677788888888777663 677
Q ss_pred cceecccCccccccceee
Q 001403 693 EISVEAENKSEVEKPLFA 710 (1084)
Q Consensus 693 l~~~~~d~~i~~w~~~~~ 710 (1084)
+++++.||++++|++...
T Consensus 398 l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 398 IVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EEECCSSSEEEEEC----
T ss_pred EEEEeCCCEEEEEECCCC
Confidence 999999999999998754
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-30 Score=291.28 Aligned_cols=295 Identities=14% Similarity=0.187 Sum_probs=239.1
Q ss_pred CCceEEEEcCCCceeee-ecccccCccccccceEEEEEcCCcccc-ceeeeecCCCCCeEEEEEcC-CCCEEEEEeCCCE
Q 001403 335 SSPMSMDFHPVQHTLLL-GLWDVNSGQKLFIRNFKVWDIGACSML-FKTALVRDPGVSVNRVVWSP-DGSLLGVAYSKHI 411 (1084)
Q Consensus 335 ~~V~~v~~spdg~~las-~~~d~~sg~~~~~~~v~iwd~~~~~~~-~~~~~~~~h~~~V~~v~fsp-dg~~las~~~dg~ 411 (1084)
.....++++|+...++. +..| |.|+||++.+.... .....+.+|...|.+++|+| ++++||+|+.||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~---------g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~ 105 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGG---------GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCT 105 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSS---------CCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSE
T ss_pred cCCCcEEECCCeEEEEEEEcCC---------CEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCe
Confidence 35667999999876554 5555 99999999654332 23334788999999999999 9999999999999
Q ss_pred EEEEEccCCccc----cceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe--ccCCCcEEEEee
Q 001403 412 VQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAPVYSLCP 485 (1084)
Q Consensus 412 v~iwd~~~~~~~----~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~--~~h~~~v~~~~~ 485 (1084)
|+|||+.++... .....+.+|...|.+++|+|++.. ++++++.|++|++||+.+++.+..+ .+|...|.+++|
T Consensus 106 v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 184 (402)
T 2aq5_A 106 VMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDW 184 (402)
T ss_dssp EEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEE
T ss_pred EEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEE
Confidence 999999987432 233478899999999999999843 7999999999999999999999999 889999999999
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCCCceEee-cCCCCe-EEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE-eee
Q 001403 486 HAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRT 562 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~-i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~ 562 (1084)
++ ++.+|++++.||.|++||+++++....+ ..+... +.+++|+|++++++++.. +..++.|++||+.+++. +..
T Consensus 185 ~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~~~~~~~ 261 (402)
T 2aq5_A 185 SR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHLEEPLSL 261 (402)
T ss_dssp CT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBCSSCSEE
T ss_pred CC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCccccCCceE
Confidence 65 6789999999999999999998887777 566654 899999999999988731 12378899999998664 323
Q ss_pred ee-ccccccCceEEEEEcCCCCEEEE-EECCCcEEEEECCCCeE-EEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEE
Q 001403 563 YQ-GLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 639 (1084)
Q Consensus 563 ~~-~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 639 (1084)
.. .+. ..+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...+.+++|+|++.++++ .++.++
T Consensus 262 ~~~~~~---~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~ 336 (402)
T 2aq5_A 262 QELDTS---SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIAR 336 (402)
T ss_dssp EECCCC---SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEE
T ss_pred EeccCC---CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEE
Confidence 32 233 67999999999999975 55799999999998873 444444334456999999999988774 567999
Q ss_pred EEEcCCCC
Q 001403 640 ILETPESN 647 (1084)
Q Consensus 640 iwd~~~~~ 647 (1084)
+|++.++.
T Consensus 337 ~~~l~~~~ 344 (402)
T 2aq5_A 337 FYKLHERK 344 (402)
T ss_dssp EEEEETTE
T ss_pred EEEcCCCc
Confidence 99998763
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=286.04 Aligned_cols=260 Identities=13% Similarity=0.161 Sum_probs=216.1
Q ss_pred eeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC--CCEE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--GSLL 403 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd--g~~l 403 (1084)
.+.++.+|.+.|.+++|+|||++||++..| +.|+|||+........ ..+.+|...|.+++|+|+ +++|
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l 72 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSD---------KTIKIFEVEGETHKLI-DTLTGHEGPVWRVDWAHPKFGTIL 72 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETT---------SCEEEEEEETTEEEEE-EEECCCSSCEEEEEECCGGGCSEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECC---------CcEEEEecCCCcceee-eEecCCCCcEEEEEeCCCCCCCEE
Confidence 457789999999999999999999999888 9999999974333222 237789999999999987 9999
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC--CCcEEEEEEeCCCcEEEEECCCCc--eeeEeccCCCc
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAP 479 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~l~s~~~d~~i~vwd~~~g~--~~~~~~~h~~~ 479 (1084)
++++.||.|++||+.+++.. ....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++. ....+.+|...
T Consensus 73 ~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 149 (379)
T 3jrp_A 73 ASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 149 (379)
T ss_dssp EEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEEECCTTC
T ss_pred EEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEecCCCCc
Confidence 99999999999999998621 23367789999999999999 88 89999999999999999874 34567789999
Q ss_pred EEEEeecccC-----------CCcEEEEEecCCeEEEEECCCCCce----EeecCCCCeEEEEEEcCC---CCEEEEEee
Q 001403 480 VYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSAN---GRRLFSCGT 541 (1084)
Q Consensus 480 v~~~~~~~~~-----------~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~d---~~~l~~~~~ 541 (1084)
|.+++|++.. ++.++++++.||.|++||+...... ..+..|...|.+++|+|+ +++|++++.
T Consensus 150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~ 229 (379)
T 3jrp_A 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 229 (379)
T ss_dssp EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC
Confidence 9999997632 5789999999999999999876543 456778889999999999 899999886
Q ss_pred CCCCCeeEEEecCCCceE---eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 001403 542 SKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 603 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 603 (1084)
++.|++||+.++.. ...+.. ..+...|.+++|+|++++|++++.||.|++|++..+.
T Consensus 230 ----dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 230 ----DRTCIIWTQDNEQGPWKKTLLKE-EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp ----TSCEEEEEESSTTSCCEEEESSS-SCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred ----CCEEEEEeCCCCCccceeeeecc-ccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 66799999998641 122221 1133789999999999999999999999999987543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=281.75 Aligned_cols=285 Identities=10% Similarity=-0.001 Sum_probs=238.9
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
..+|...|.+++|+|++++|++++.|+.|++||+.+++.......+.+|...|.+++|+|+++. ++++|+.|+.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 4579999999999999999999999999999999988632233356689999999999999872 378899999999999
Q ss_pred C-CCCceeeEecc--CCCcEEEEeecccCCCcEEEEEecCCeEEEEECCC---------CCceEeecCCCCeEEEEEEcC
Q 001403 464 A-VTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---------LGARVDYDAPGLGCTRMAYSA 531 (1084)
Q Consensus 464 ~-~~g~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~~~~s~ 531 (1084)
+ .+++. ..+.+ |...|.+++|++ +.++++++.||.|++||+++ .+....+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77755 77888 999999999976 57999999999999999987 55555555 677899999999
Q ss_pred CCCEEEEEeeCCCCCeeEEEecCCC-ceE--eeeeeccccccCceEEEEEcC-CCCEEEEEECCCcEEEEECCCC-----
Q 001403 532 NGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKV----- 602 (1084)
Q Consensus 532 d~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~----- 602 (1084)
++ +++++. ++.|++||+.+ +.. ......+. ..+.+++|+| +++++++++.||.|++|++...
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLK---YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCS---SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCC---CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 88 777664 66799999988 543 22333444 7899999999 9999999999999999999887
Q ss_pred -eEEEEEcCCCC-------CCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeecccc-ccceeEEEEcCCCceeee
Q 001403 603 -QLLTTIDAGGG-------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGA 673 (1084)
Q Consensus 603 -~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~p~~~~~~~ 673 (1084)
+....+..+.. ...|.+++|+|++++|++++.||.|++||+.+++.+..+..| ...|.+++ |
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~------- 302 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C------- 302 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-------
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-------
Confidence 77777776543 336899999999999999999999999999999999999888 88887776 3
Q ss_pred eccCceeEecCCCCCCCCccceecccCc-cccccc
Q 001403 674 GIANGSVSVNEDPKEDVKPEISVEAENK-SEVEKP 707 (1084)
Q Consensus 674 ~~~~~~~~~~~~~s~~~~~l~~~~~d~~-i~~w~~ 707 (1084)
+++++++++.|+. .+.+..
T Consensus 303 ---------------~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 303 ---------------SDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ---------------CSSEEEEEEECTHHHHCSSS
T ss_pred ---------------CCCeEEEEecCCcccccccc
Confidence 5778889999998 666664
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=285.76 Aligned_cols=256 Identities=17% Similarity=0.299 Sum_probs=218.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC--CCcEEEEEEeCCCcEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 461 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~l~s~~~d~~i~v 461 (1084)
+.+|...|.+++|+|+|++||+|+.||.|+|||+..+.. .....+.+|...|++++|+++ ++ +|++++.|+.|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i 83 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 83 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence 678999999999999999999999999999999984321 233367899999999999987 77 8999999999999
Q ss_pred EECCCCc--eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCC--ceEeecCCCCeEEEEEEcC------
Q 001403 462 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------ 531 (1084)
Q Consensus 462 wd~~~g~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~------ 531 (1084)
||+.+++ .+..+.+|...|.+++|++..++.++++++.||.|++||+.... ....+..+...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999997 77888899999999999775337899999999999999998874 4456678888999999999
Q ss_pred -------CCCEEEEEeeCCCCCeeEEEecCCCce----EeeeeeccccccCceEEEEEcCC---CCEEEEEECCCcEEEE
Q 001403 532 -------NGRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW 597 (1084)
Q Consensus 532 -------d~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iw 597 (1084)
++.++++++. ++.|++||+.++. ....+.+|. ..|.+++|+|+ +++|++++.||.|++|
T Consensus 164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~---~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEeccc---CcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 6999999986 6679999998754 445666676 89999999999 8999999999999999
Q ss_pred ECCCCe---EEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCee
Q 001403 598 DMNKVQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 649 (1084)
Q Consensus 598 d~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 649 (1084)
|+.++. .........+...+.+++|+|++++|++++.||.|++|++......
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 998874 3334444334556899999999999999999999999999865433
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-29 Score=279.14 Aligned_cols=291 Identities=16% Similarity=0.153 Sum_probs=237.5
Q ss_pred eecCCCCCeEEEEEcCC---CCEEEEEeCCCEEEEEEccC-CccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCc
Q 001403 383 LVRDPGVSVNRVVWSPD---GSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 458 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspd---g~~las~~~dg~v~iwd~~~-~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~ 458 (1084)
.+.+|...|++++|+|+ |++|++|+.||.|+|||+.+ +..+ ...+.+|.+.|.+++|+|+++ +|++++.|+.
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~ 109 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI--PKAQQMHTGPVLDVCWSDDGS--KVFTASCDKT 109 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE--EEEEEECSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee--EEEeccccCCEEEEEECcCCC--EEEEEcCCCc
Confidence 47889999999999999 69999999999999999997 4332 136778999999999999999 8999999999
Q ss_pred EEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEE
Q 001403 459 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 538 (1084)
Q Consensus 459 i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 538 (1084)
|++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+.+.+....+..+. .+.++.+.+ ..+++
T Consensus 110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~ 185 (368)
T 3mmy_A 110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVV 185 (368)
T ss_dssp EEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEE
T ss_pred EEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEE
Confidence 9999999998776 5679999999999777788999999999999999999988877777665 555666554 46666
Q ss_pred EeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCE----EEEEECCCcEEEEECCCC---eEEEEEcCC
Q 001403 539 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ----ILAAGDDHVIKIWDMNKV---QLLTTIDAG 611 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~~~~~dg~i~iwd~~~~---~~~~~~~~~ 611 (1084)
++. ++.+.+|++............. ....+.++.+.++... +++++.||.|++||+... ..+..+..+
T Consensus 186 ~~~----~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 260 (368)
T 3mmy_A 186 ATA----ERGLIVYQLENQPSEFRRIESP-LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH 260 (368)
T ss_dssp EEG----GGCEEEEECSSSCEEEEECCCS-CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECS
T ss_pred EeC----CCcEEEEEeccccchhhhcccc-ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeee
Confidence 664 5669999998765433222111 1245666666655544 999999999999999987 445555554
Q ss_pred CCC----------CCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeE
Q 001403 612 GGL----------PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 681 (1084)
Q Consensus 612 ~~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~ 681 (1084)
... ..|.+++|+|++++|++++.||.|++||+.+++.+..+..|...+.+++|+
T Consensus 261 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s---------------- 324 (368)
T 3mmy_A 261 RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFN---------------- 324 (368)
T ss_dssp EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEEC----------------
T ss_pred ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEEC----------------
Confidence 321 148999999999999999999999999999999999999999999999997
Q ss_pred ecCCCCCCCCccceecccCccccccce
Q 001403 682 VNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 682 ~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
|+++++++++.|+..+.|++.
T Consensus 325 ------~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 325 ------HNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp ------TTSSCEEEEECCCSTTCGGGC
T ss_pred ------CCCCeEEEEeccccccccccc
Confidence 678888999888877777754
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=280.98 Aligned_cols=295 Identities=11% Similarity=0.123 Sum_probs=221.9
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccc-cceeeeecccccEeEEEeec--CCCcEEEEEEeCCCcE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTI 459 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~-~~~~~l~~h~~~V~~l~~s~--d~~~l~l~s~~~d~~i 459 (1084)
++.+|...|++++|+|+|++||+++.||.|++||+.++... .....+.+|...|++++|+| |++ +|++++.|++|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 47889999999999999999999999999999999976432 33446779999999999999 587 89999999999
Q ss_pred EEEECCCC---------ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec------------
Q 001403 460 KVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD------------ 518 (1084)
Q Consensus 460 ~vwd~~~g---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------------ 518 (1084)
++||+.++ +.+..+.+|...|.+++|++..++.++++++.||.|++||+.+.+....+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999987 567888999999999999765337899999999999999998776433221
Q ss_pred -CCCCeEEEEEEcCC---CCEEEEEeeCCCCCeeEEEecCCCceE--eeeeeccccccCceEEEEEcCCC----CEEEEE
Q 001403 519 -APGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAK----DQILAA 588 (1084)
Q Consensus 519 -~~~~~i~~~~~s~d---~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~ 588 (1084)
.+...+.+++|+|+ +..+++++. ++.+.+|+...++. +..+.+|. ..|.+++|+|++ ++|+++
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~~p~~~~~~~~l~s~ 236 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHK---SLIRSISWAPSIGRWYQLIATG 236 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCC---SCEEEEEECCCSSCSSEEEEEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCC---cceeEEEECCCCCCcceEEEEE
Confidence 45668999999997 899999875 66688888777765 56666776 899999999998 899999
Q ss_pred ECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEE----ECCCeEEEEEcCCCCeeeeccccccceeEEEE
Q 001403 589 GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI----ANENRIKILETPESNSVDAAGVLSDNLRKLSV 664 (1084)
Q Consensus 589 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 664 (1084)
+.||.|++||+.++......... .........++....++.+ .....+.+|+....+.+..+.+|...|++++|
T Consensus 237 ~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 314 (351)
T 3f3f_A 237 CKDGRIRIFKITEKLSPLASEES--LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW 314 (351)
T ss_dssp ETTSCEEEEEEEECC-----------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred cCCCeEEEEeCCCCcCccccCCc--ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence 99999999999876554433221 1122333333433333333 23445666666666788888899999999999
Q ss_pred cCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceee
Q 001403 665 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 710 (1084)
Q Consensus 665 ~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~ 710 (1084)
+ |+++++++++.|+.+++|++...
T Consensus 315 s----------------------~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 315 N----------------------LTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp C----------------------SSSCCEEEEETTSCEEEEEECTT
T ss_pred c----------------------CCCCEEEEecCCCcEEEEecCcC
Confidence 7 67889999999999999998743
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-27 Score=251.61 Aligned_cols=294 Identities=14% Similarity=0.130 Sum_probs=207.4
Q ss_pred cEeEEEee-cCCCcEEEEEEeCCCcEEEEECCCC---ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCC
Q 001403 435 NVNDLAFS-APCKQISVITCGDDKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 510 (1084)
Q Consensus 435 ~V~~l~~s-~d~~~l~l~s~~~d~~i~vwd~~~g---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 510 (1084)
.+.++-|- +..+.+.+++++ ..+|++|+..++ ++++++.+|..+|..+.+.|+..+-..++-+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------ 107 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------ 107 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC------------
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec------------
Confidence 35666663 445555677777 678999999999 8999999999999999997754432222222
Q ss_pred CCceEeecCCCCeEEEEEEcCC----CCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEE
Q 001403 511 LGARVDYDAPGLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL 586 (1084)
Q Consensus 511 ~~~~~~~~~~~~~i~~~~~s~d----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 586 (1084)
..+...|.+++++|| ++.+++++. .+.+|++.+++ .+.
T Consensus 108 -------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~~g~-------------------------lv~ 149 (356)
T 2w18_A 108 -------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLTKRR-------------------------LVS 149 (356)
T ss_dssp -------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEETTTE-------------------------EEE
T ss_pred -------cccccceEEEEECCCccccccEEEeCCC------eEEEEecCCCc-------------------------EEE
Confidence 123347889999999 999998753 26666543333 333
Q ss_pred EEE--CCCcEEEEEC-CCCeEEEEEcCCCCCCCcceEEEec---CCCEEEEEECCCeEEEEEcCCCCeeeecccccccee
Q 001403 587 AAG--DDHVIKIWDM-NKVQLLTTIDAGGGLPENPRICFNK---NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLR 660 (1084)
Q Consensus 587 ~~~--~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 660 (1084)
+++ .|+.|++|++ .+|+.+..+..+.. .+..++|++ ++.+|++++.|++|+|||+.+++.+..+.++..
T Consensus 150 ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~--- 224 (356)
T 2w18_A 150 SSGTLSDQQVEVMTFAEDGGGKENQFLMPP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS--- 224 (356)
T ss_dssp EESSSTTCEEEEEEECTTSCEEEEEEECCC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC----
T ss_pred ecccCCCCcEEEEEECCCCceeeeeccCCC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc---
Confidence 322 4677777777 34666666665554 578899998 789999999999999999999988877754321
Q ss_pred EEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCe
Q 001403 661 KLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA 740 (1084)
Q Consensus 661 ~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 740 (1084)
+...+.+++|+|+|+.
T Consensus 225 ----------------------------------------------------------------~v~~v~~vafSpdG~~ 240 (356)
T 2w18_A 225 ----------------------------------------------------------------YQASVCHKAYSEMGLL 240 (356)
T ss_dssp ------------------------------------------------------------------CCCEEEEEEETTEE
T ss_pred ----------------------------------------------------------------ceeeeEEEEECCCCCE
Confidence 1134667889999988
Q ss_pred EEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEE
Q 001403 741 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISL 819 (1084)
Q Consensus 741 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~v 819 (1084)
+++++.+.. + ..+++++ |++|++
T Consensus 241 lvs~s~~~~--~------------------------------------------------------w~laSGs~D~tIkl 264 (356)
T 2w18_A 241 FIVLSHPCA--K------------------------------------------------------ESESLRSPVFQLIV 264 (356)
T ss_dssp EEEEC--------------------------------------------------------------------CCEEEEE
T ss_pred EEEeccCCC--c------------------------------------------------------ceeeccCCCcEEEE
Confidence 777664311 0 1355666 789999
Q ss_pred EEcCCceeEEEE-----cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEE-EEEEcCCCCEE
Q 001403 820 YIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNIL 893 (1084)
Q Consensus 820 wd~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~-~l~~spd~~~l 893 (1084)
||..+++.+..+ .+|...+.+..+ ++.++|+|+.||+|+|||+.+++++.++.+|...+. +++|||||++|
T Consensus 265 Wd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~L 341 (356)
T 2w18_A 265 INPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHL 341 (356)
T ss_dssp EETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEE
T ss_pred EECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEE
Confidence 999999887765 356555444444 367999999999999999999999999999988765 58999999999
Q ss_pred EEEeCCCcEEEEeC
Q 001403 894 VSSGGDAQIFVWDV 907 (1084)
Q Consensus 894 ~s~s~dg~I~iwd~ 907 (1084)
++|+.|++|+|||+
T Consensus 342 aSGS~D~TIklWd~ 355 (356)
T 2w18_A 342 LAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECTTSCEEEEEE
T ss_pred EEEECCCcEEEecC
Confidence 99999999999996
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-28 Score=281.11 Aligned_cols=289 Identities=12% Similarity=0.020 Sum_probs=230.5
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcc---ccceee------------------------------
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACS---MLFKTA------------------------------ 382 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~---~~~~~~------------------------------ 382 (1084)
++.+++|||||++|+++ .+ +.|++||+.++. ......
T Consensus 6 p~~~v~~s~dg~~l~~~-~~---------~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAI-IK---------NCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKK 75 (450)
T ss_dssp CCCEEEECSSSSEEEEE-ET---------TEEEEEEEETTTEEEEEEEEECCC---------------------------
T ss_pred cEEEEEecCCCCEEEEE-eC---------CeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccc
Confidence 88999999999988775 23 789999987766 211110
Q ss_pred ---------------------eecCCCCCeEEEEEcCCCCEE-EEEeCCCEEEEEEcc--CCccccceeeeecccccEeE
Q 001403 383 ---------------------LVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVND 438 (1084)
Q Consensus 383 ---------------------~~~~h~~~V~~v~fspdg~~l-as~~~dg~v~iwd~~--~~~~~~~~~~l~~h~~~V~~ 438 (1084)
...+|...|.+++|+|+|++| |+++.||.|+|||+. +++.+..+. ...|...|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~ 154 (450)
T 2vdu_B 76 LKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNA 154 (450)
T ss_dssp ------------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEE
T ss_pred cccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceE
Confidence 011455579999999999996 889999999999999 776655321 1256789999
Q ss_pred EEeecCCCcEEEEEEeCCCcEEEEECCCCceee----EeccCCCcEEEEeeccc-CCCcEEEEEecCCeEEEEECCCCCc
Q 001403 439 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY----SFEGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGA 513 (1084)
Q Consensus 439 l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~ 513 (1084)
++|+|+++ +|++++.|+.|++|++.++.... .+.+|...|.+++|+++ ..+.+|++++.|+.|++||+.+...
T Consensus 155 ~~~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~ 232 (450)
T 2vdu_B 155 ISIAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI 232 (450)
T ss_dssp EEECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC
T ss_pred EEEcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce
Confidence 99999999 89999999999999999887554 78899999999999774 1268999999999999999998887
Q ss_pred eEe-ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccc----------------------ccc
Q 001403 514 RVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ----------------------LQH 570 (1084)
Q Consensus 514 ~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~----------------------~~~ 570 (1084)
... +..+...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. ...
T Consensus 233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (450)
T 2vdu_B 233 VDKWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE 307 (450)
T ss_dssp EEEECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred eeeeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce
Confidence 766 55788899999999 9999999985 6789999999999888876431 123
Q ss_pred CceEEEEEcCCCCEEEEEE-CCCcEEEEEC--CCC---eEEEEEcCCCCCCCcceEEEecCCCEEEEEEC------CCeE
Q 001403 571 NSVSVVHFDTAKDQILAAG-DDHVIKIWDM--NKV---QLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRI 638 (1084)
Q Consensus 571 ~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i 638 (1084)
..+..++|+|+++++++++ .|+.|++|++ .++ +.+..+..+ ..+.+++|+|++.++++++. +..|
T Consensus 308 ~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i 384 (450)
T 2vdu_B 308 FAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFA 384 (450)
T ss_dssp CCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSE
T ss_pred EEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcce
Confidence 5689999999999999998 8999999999 665 667777765 35899999996533333332 4457
Q ss_pred EEEEcCC
Q 001403 639 KILETPE 645 (1084)
Q Consensus 639 ~iwd~~~ 645 (1084)
.+|.+..
T Consensus 385 ~v~~~~~ 391 (450)
T 2vdu_B 385 KFIEYNL 391 (450)
T ss_dssp EEEEEET
T ss_pred EEEEEEc
Confidence 8887653
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-28 Score=272.11 Aligned_cols=282 Identities=13% Similarity=0.137 Sum_probs=217.1
Q ss_pred eeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEE-E
Q 001403 327 AQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG-V 405 (1084)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la-s 405 (1084)
+.++..|.+.|.+++|||||++||+|..| + ++||++.+....... +...+..+++++++++++ +
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~---------~-~~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLK---------S-FEIYNVHPVAHIMSQ-----EMRHLSKVRMLHRTNYVAFV 76 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSS---------E-EEEEEETTEEEEEEE-----ECSCCCEEEECTTSSEEEEE
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCC---------E-EEEEecCCcceeeee-----ecCCeEEEEEcCCCCEEEEE
Confidence 44568899999999999999999998644 3 789999876555432 223588899999999885 5
Q ss_pred EeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-ceeeEeccCCCcEEEEe
Q 001403 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLC 484 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g-~~~~~~~~h~~~v~~~~ 484 (1084)
++.|++|+|||+.+++.+. .+. |...|.+++|+++. ++.+. |+.|++||+.++ +.+..+.. +...++
T Consensus 77 ~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~ 144 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCE 144 (355)
T ss_dssp CSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEE
T ss_pred ECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEEE-cCEEEEEECCCCceeeEEecc---CCceEE
Confidence 6778999999999987665 443 66789999999864 33333 789999999998 77777665 344445
Q ss_pred ecccCCCcEEEE--EecCCeEEEEECCCCC----------------ceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001403 485 PHAKENIHFIFS--ISVDGKIKAWLYDSLG----------------ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 546 (1084)
Q Consensus 485 ~~~~~~~~~l~s--~s~dg~i~iwd~~~~~----------------~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 546 (1084)
+++ .+++. |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|++++. +
T Consensus 145 ~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~----d 216 (355)
T 3vu4_A 145 FSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ----D 216 (355)
T ss_dssp EET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET----T
T ss_pred EEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC----C
Confidence 544 35555 6899999999998765 15678889999999999999999999986 7
Q ss_pred ee-EEEecCCCceEeeeee-c-cccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE--EE-------------
Q 001403 547 SF-LVEWNESEGAIKRTYQ-G-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TI------------- 608 (1084)
Q Consensus 547 ~~-i~~wd~~~~~~~~~~~-~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~------------- 608 (1084)
+. |++||+.+++.+..+. + |. ..|.+++|+|++++|++++.|++|++||+..+.... .+
T Consensus 217 ~~~v~iwd~~~~~~~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (355)
T 3vu4_A 217 GTIIRVFKTEDGVLVREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW 293 (355)
T ss_dssp CSEEEEEETTTCCEEEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSS
T ss_pred CCEEEEEECCCCcEEEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccc
Confidence 77 9999999999999998 5 66 899999999999999999999999999997653211 10
Q ss_pred -----cC-CCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 609 -----DA-GGGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 609 -----~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
.. .........++|+++++.+++++.||.+++|++..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 294 SLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 00 011122467899999999999999999999987643
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=277.83 Aligned_cols=285 Identities=13% Similarity=0.144 Sum_probs=232.7
Q ss_pred CCeEEEEEcCCCCEEE-EEeCCCEEEEEEccCC-ccccceeeeecccccEeEEEeec-CCCcEEEEEEeCCCcEEEEECC
Q 001403 389 VSVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAV 465 (1084)
Q Consensus 389 ~~V~~v~fspdg~~la-s~~~dg~v~iwd~~~~-~~~~~~~~l~~h~~~V~~l~~s~-d~~~l~l~s~~~d~~i~vwd~~ 465 (1084)
.....++++|+...++ +++.||.|+||++... +.......+.+|.+.|++++|+| ++. +|++|+.|++|++||+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 3455689999876554 4788999999999654 32233446789999999999999 787 89999999999999999
Q ss_pred CC-------ceeeEeccCCCcEEEEeecccCCC-cEEEEEecCCeEEEEECCCCCceEee--cCCCCeEEEEEEcCCCCE
Q 001403 466 TG-------SRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRR 535 (1084)
Q Consensus 466 ~g-------~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~d~~~ 535 (1084)
++ +.+..+.+|...|.+++|++ ++ .+|++++.||.|++||+.+++....+ ..+...|.+++|+|++++
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 190 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHP--TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL 190 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECS--SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECc--CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE
Confidence 88 67888999999999999965 44 69999999999999999998888888 788899999999999999
Q ss_pred EEEEeeCCCCCeeEEEecCCCceEeeee-eccccccCceEEEEEcCCCCEEEEE---ECCCcEEEEECCCCeE-EEEEcC
Q 001403 536 LFSCGTSKEGESFLVEWNESEGAIKRTY-QGLQLQHNSVSVVHFDTAKDQILAA---GDDHVIKIWDMNKVQL-LTTIDA 610 (1084)
Q Consensus 536 l~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~ 610 (1084)
|++++. ++.|++||+++++.+..+ ..|. ...+..+.|+|++.++++| +.|+.|++||+.+++. +.....
T Consensus 191 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~ 264 (402)
T 2aq5_A 191 ICTSCR----DKRVRVIEPRKGTVVAEKDRPHE--GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL 264 (402)
T ss_dssp EEEEET----TSEEEEEETTTTEEEEEEECSSC--SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC
T ss_pred EEEEec----CCcEEEEeCCCCceeeeeccCCC--CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec
Confidence 999986 677999999999999888 6666 2348999999999999998 7999999999998664 333322
Q ss_pred CCCCCCcceEEEecCCCEEEEEE-CCCeEEEEEcCCCCe-eeeccc--cccceeEEEEcCCCceeeeeccCceeEecCCC
Q 001403 611 GGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNS-VDAAGV--LSDNLRKLSVNPISTVTGAGIANGSVSVNEDP 686 (1084)
Q Consensus 611 ~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~--~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~ 686 (1084)
.+...+.+++|+|+++++++++ .||.|++|++.+++. +..+.. +...+.+++|+
T Consensus 265 -~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s--------------------- 322 (402)
T 2aq5_A 265 -DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM--------------------- 322 (402)
T ss_dssp -CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC---------------------
T ss_pred -cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEe---------------------
Confidence 2233589999999999997555 699999999998874 444444 34788888887
Q ss_pred CCCCCccceecccCccccccce
Q 001403 687 KEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 687 s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
|++.++++ .++.+++|++.
T Consensus 323 -p~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 323 -PKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp -CGGGSCGG--GTEEEEEEEEE
T ss_pred -ccccccee--cceeEEEEEcC
Confidence 55666654 45589999986
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-27 Score=266.43 Aligned_cols=328 Identities=11% Similarity=0.118 Sum_probs=253.0
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEE-EEEecCCeEEEEECCCCCceEeecCCCCeEEEE
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 527 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 527 (1084)
++++++.|+.|++||+.+++.+..+..|.. +.+++|++ ++.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 788899999999999999999999887754 88999955 66665 677799999999999888777776655 89999
Q ss_pred EEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEE-EEEECCCcEEEEECCCCeEEE
Q 001403 528 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLT 606 (1084)
Q Consensus 528 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~ 606 (1084)
+|+|+++++++++. .++.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++.+.
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK----SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC----CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 99999999877653 25679999999999988877654 68999999999988 577789999999999999998
Q ss_pred EEcCCCCCCCcceEEEecCCCEE-EEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCC
Q 001403 607 TIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 685 (1084)
Q Consensus 607 ~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~ 685 (1084)
.+..+.. +..++|+|+++.+ ++++.++.|++||+.+++....+.
T Consensus 153 ~~~~~~~---~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------------------------------- 197 (391)
T 1l0q_A 153 TVSVGRS---PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-------------------------------- 197 (391)
T ss_dssp EEECCSS---EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------------------------------
T ss_pred EEecCCC---cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--------------------------------
Confidence 8876543 6899999999887 566778999999987653221110
Q ss_pred CCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcc
Q 001403 686 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 765 (1084)
Q Consensus 686 ~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~ 765 (1084)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe----CCeEEEEEcCCceeEEEEcCCCCCeEEE
Q 001403 766 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSL 841 (1084)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s----dg~i~vwd~~~~~~~~~~~~~~~~i~~l 841 (1084)
+...+.+++|+|+|+++++++ ++.|++||+.+++.+..+..+. .+.++
T Consensus 198 ---------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~ 249 (391)
T 1l0q_A 198 ---------------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGI 249 (391)
T ss_dssp ---------------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEE
T ss_pred ---------------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEE
Confidence 122344566777777666664 5789999999998888887654 57899
Q ss_pred EEcCCCCcEE-EEEeCCCeEEEEEcCCceeeeeecccccCEE---EEEEcC------------CC----------CEEEE
Q 001403 842 AFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVT---GLVFSD------------AL----------NILVS 895 (1084)
Q Consensus 842 ~~s~~d~~~l-a~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~---~l~~sp------------d~----------~~l~s 895 (1084)
+|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+.+.| +. ..+..
T Consensus 250 ~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~ 328 (391)
T 1l0q_A 250 AVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTD 328 (391)
T ss_dssp EECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEE
T ss_pred EEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEe
Confidence 9999 77766 6778899999999999999888877654421 122222 21 34556
Q ss_pred EeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE
Q 001403 896 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 945 (1084)
Q Consensus 896 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 945 (1084)
.+.|.++++||+..+.... . .-....|+++|.+.+.
T Consensus 329 ~~~~~~~~~W~~~~g~~~~------~--------~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 329 LSKDATEWKWDFGDGSSSK------K--------QNPTHTYSETGIYTVR 364 (391)
T ss_dssp CCBSCSEEEEECSSSCEEC------S--------SSCEECCSSCEEEEEE
T ss_pred CCCCceEEEEECCCCcccC------c--------CCCeEEeCCCceEEEE
Confidence 6778899999998765211 1 1124679999998876
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=251.03 Aligned_cols=270 Identities=11% Similarity=0.053 Sum_probs=201.3
Q ss_pred EEEEEECCCeEEEEEcCCC---CeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcccc
Q 001403 628 LLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 704 (1084)
Q Consensus 628 ~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~ 704 (1084)
.+++++. ..|++|+...+ +.+.+..++..+|..+.+.|+..-+ ++..- |
T Consensus 56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------------------~~~~~-~---- 107 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNL----------------------VCVAL-G---- 107 (356)
T ss_dssp EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSC----------------------EEEEE-C----
T ss_pred EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccce----------------------eeeee-c----
Confidence 4555554 79999999998 7888999999999998888653322 11110 1
Q ss_pred ccceeecCccceeeccCCccccceEEEEEEecC----CCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCC
Q 001403 705 EKPLFARPSECQSLLLPSKVKANKISRLTYNNG----GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 780 (1084)
Q Consensus 705 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~----g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1084)
.-+...|..++++|| ++.++.++.+ +.+|++
T Consensus 108 ------------------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l------------------------- 142 (356)
T 2w18_A 108 ------------------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL------------------------- 142 (356)
T ss_dssp ------------------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEE-------------------------
T ss_pred ------------------cccccceEEEEECCCccccccEEEeCCCe--EEEEec-------------------------
Confidence 014578999999999 9988887744 555542
Q ss_pred CccccccCcCCCCCCCccEEEecCCCCEEEEEe---CCeEEEEEc-CCceeEEEEcCCCCCeEEEEEcC--CCCcEEEEE
Q 001403 781 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIV-MTFKTILTIMPPSPTATSLAFNP--HDNNVIAIG 854 (1084)
Q Consensus 781 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s---dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~s~--~d~~~la~g 854 (1084)
++|+.+.++. ++.|++|++ .+|+.+..+..|...++.++|++ +++.+||+|
T Consensus 143 -----------------------~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg 199 (356)
T 2w18_A 143 -----------------------TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT 199 (356)
T ss_dssp -----------------------TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE
T ss_pred -----------------------CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe
Confidence 3566666654 788999999 45888888888888888888887 467899999
Q ss_pred eCCCeEEEEEcCCceeeeeecccc---cCEEEEEEcCCCCEE------------EEEeCCCcEEEEeCCCCceeeeeeee
Q 001403 855 MDDSTILIYNARSSEVISKLEGHS---KRVTGLVFSDALNIL------------VSSGGDAQIFVWDVDGWGIQTCRSLQ 919 (1084)
Q Consensus 855 ~~dg~i~iwd~~~~~~~~~l~~h~---~~V~~l~~spd~~~l------------~s~s~dg~I~iwd~~~~~~~~~~~~~ 919 (1084)
+.|++|+|||+.+|+++.++.+|. ..+.+++|+|||+++ ++|+.|++|++||..+++......+.
T Consensus 200 S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~ 279 (356)
T 2w18_A 200 TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC 279 (356)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC
T ss_pred cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee
Confidence 999999999999999999998754 367788999999886 66889999999999998755433333
Q ss_pred cCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCE-EEEEEccCCCEEEEEeCCCcEEEE
Q 001403 920 TPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPI-SQATFSCDCRMVFTSFVDGTLSIH 997 (1084)
Q Consensus 920 ~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v-~~l~fs~dg~~l~t~~~dg~i~vw 997 (1084)
.+.+|.. .+. ..+.++.++|++ .|++|+|||+.+|+++..+ .+|...+ ..++|||||++|++|+.|++|+||
T Consensus 280 ~p~Gh~~---~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL-~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW 353 (356)
T 2w18_A 280 LPPGQAG---RFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTALL-PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY 353 (356)
T ss_dssp CCTTCCC---CEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEEE-CCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred ccCCCcc---eeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEEe-cCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence 3455543 333 334448888885 6999999999999999884 4676554 468999999999999999999999
Q ss_pred Ec
Q 001403 998 EA 999 (1084)
Q Consensus 998 d~ 999 (1084)
|+
T Consensus 354 d~ 355 (356)
T 2w18_A 354 HY 355 (356)
T ss_dssp EE
T ss_pred cC
Confidence 96
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=274.18 Aligned_cols=353 Identities=12% Similarity=0.027 Sum_probs=252.2
Q ss_pred CCCceEEE---EcCCCceeeeecccccCcc-----ccccceEEEEEcCC--ccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 334 SSSPMSMD---FHPVQHTLLLGLWDVNSGQ-----KLFIRNFKVWDIGA--CSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 334 ~~~V~~v~---~spdg~~las~~~d~~sg~-----~~~~~~v~iwd~~~--~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
...+..++ |+|++..++.......... ...++.+.||.+.. ....... .+..+ ..+.+++|+|++.++
T Consensus 60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~~~~~-~~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFIS-RFKTG-FQPKSVRFIDNTRLA 137 (433)
T ss_dssp TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEE-EEECS-SCBCCCEESSSSEEE
T ss_pred CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEE-EEcCC-CCceEEEEeCCCeEE
Confidence 34677888 8998877765321110000 01124344555433 3222211 12323 456799999988888
Q ss_pred EEEeCCCEEEEEEccCCcccccee--eeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEE
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 481 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~--~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~ 481 (1084)
++++.++.|++||+.+++...... .+.+|.+.|.+++|+++++ ++++++.|+.|++||+++++.+..+..|...+.
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~ 215 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK 215 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCCceEEEEEcCCCCCee
Confidence 888889999999999987654211 3457888999999999998 899999999999999999999999999999999
Q ss_pred EEeecccCCCcEE-EEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCC----CCeeEEEecCCC
Q 001403 482 SLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNESE 556 (1084)
Q Consensus 482 ~~~~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~----~~~~i~~wd~~~ 556 (1084)
+++|++ ++..+ ++++.|+.|++||+++++....+.. ...+.+++|+|+|+++++++.... .++.|++||+.+
T Consensus 216 ~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~ 292 (433)
T 3bws_A 216 ILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK 292 (433)
T ss_dssp EEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT
T ss_pred EEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC
Confidence 999965 55666 4555899999999998776666554 446899999999999998874321 367899999999
Q ss_pred ceEeeeeeccccccCceEEEEEcCCCCEE-EEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC
Q 001403 557 GAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 635 (1084)
Q Consensus 557 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 635 (1084)
++.+..+. +. ..+..++|+|+++.+ ++++.|+.|++||+.+++.+..+... ..+.+++|+|+++++++++.+
T Consensus 293 ~~~~~~~~-~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 293 EKLIDTIG-PP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF---DKPNTIALSPDGKYLYVSCRG 365 (433)
T ss_dssp TEEEEEEE-EE---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEEEECTTSSEEEEEECC
T ss_pred CcEEeecc-CC---CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC---CCCCeEEEcCCCCEEEEEecC
Confidence 98877663 33 478899999999866 55689999999999999998888643 247899999999999888763
Q ss_pred CeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccc
Q 001403 636 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC 715 (1084)
Q Consensus 636 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~ 715 (1084)
.. .....++++++.||.+++||.........
T Consensus 366 ~~-------------------------------------------------~~~~~~~~~g~~dg~v~~~d~~~~~~~~~ 396 (433)
T 3bws_A 366 PN-------------------------------------------------HPTEGYLKKGLVLGKVYVIDTTTDTVKEF 396 (433)
T ss_dssp CC-------------------------------------------------CTTTCTTSCCSSCCEEEEEETTTTEEEEE
T ss_pred CC-------------------------------------------------ccccccccccccceEEEEEECCCCcEEEE
Confidence 20 01122344444455555555432111110
Q ss_pred eeeccCCccccceEEEEEEecCCCeEEEeec-CCceEEeecc
Q 001403 716 QSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWP 756 (1084)
Q Consensus 716 ~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~vw~~~ 756 (1084)
. . ....+.+++|+|+|+.+++++. ++.+++|++.
T Consensus 397 ~----~---~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 397 W----E---AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp E----E---CSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred e----c---CCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 0 0 2245788999999999888775 8999999864
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=268.05 Aligned_cols=355 Identities=14% Similarity=0.099 Sum_probs=260.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC-CEEEEEEccCCccccceeeeecccccEeEEE---eecCCCcEEEEE----------
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLA---FSAPCKQISVIT---------- 452 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~d-g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~---~s~d~~~l~l~s---------- 452 (1084)
....|..+.|+|....++..... ...+++.. .....+..++ |+|++..+++++
T Consensus 26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 92 (433)
T 3bws_A 26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEM-------------DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYR 92 (433)
T ss_dssp -CEEEEEEEEECCTTCEEEETTEECCEEEEEE-------------ETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEE
T ss_pred CCcEEEEEecccccCceEEcCceecceeeeec-------------ccCCccEEEEEeeccCCCcEEEEEEccccCcceee
Confidence 44567778888865444443221 11222221 1233456666 777766432222
Q ss_pred --EeCCC--cEEEEECCCC--ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE-----eecCCC
Q 001403 453 --CGDDK--TIKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-----DYDAPG 521 (1084)
Q Consensus 453 --~~~d~--~i~vwd~~~g--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-----~~~~~~ 521 (1084)
++.++ .|..||..++ +.+..+..+. .+.+++|++ ++.++++++.++.|++||+.+++... .+..+.
T Consensus 93 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 169 (433)
T 3bws_A 93 IRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL 169 (433)
T ss_dssp ESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred ecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC
Confidence 23344 4444454445 5566666554 455888865 66788888889999999999887765 344677
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECC
Q 001403 522 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMN 600 (1084)
Q Consensus 522 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~ 600 (1084)
..+.+++|+++++.+++++. ++.|++||+.+++.+..+..+. ..+.+++|+|+++.+++++ .|+.|++||+.
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~----d~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 242 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQ----ANAVHVFDLKTLAYKATVDLTG---KWSKILLYDPIRDLVYCSNWISEDISVIDRK 242 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGG----GTEEEEEETTTCCEEEEEECSS---SSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CceeEEEEcCCCEEEEEECC----CCEEEEEECCCceEEEEEcCCC---CCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence 79999999999999998875 6679999999999998888766 7899999999999886655 79999999999
Q ss_pred CCeEEEEEcCCCCCCCcceEEEecCCCEEEEEE--------CCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceee
Q 001403 601 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA--------NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 672 (1084)
Q Consensus 601 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~ 672 (1084)
+++.+..+..+. .+.+++|+|+++++++++ .|+.|++||+.+++......
T Consensus 243 ~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~------------------- 300 (433)
T 3bws_A 243 TKLEIRKTDKIG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG------------------- 300 (433)
T ss_dssp TTEEEEECCCCS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-------------------
T ss_pred CCcEEEEecCCC---CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-------------------
Confidence 999988876543 378999999999999887 36777777776542211100
Q ss_pred eeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEE
Q 001403 673 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 752 (1084)
Q Consensus 673 ~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~v 752 (1084)
T Consensus 301 -------------------------------------------------------------------------------- 300 (433)
T 3bws_A 301 -------------------------------------------------------------------------------- 300 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEE-e-CCeEEEEEcCCceeEEE
Q 001403 753 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-S-GGVISLYIVMTFKTILT 830 (1084)
Q Consensus 753 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-s-dg~i~vwd~~~~~~~~~ 830 (1084)
+...+.+++|+|+++.++++ + ++.|++||+.+++....
T Consensus 301 ----------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~ 340 (433)
T 3bws_A 301 ----------------------------------------PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS 340 (433)
T ss_dssp ----------------------------------------EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ----------------------------------------CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence 11234466777887655444 3 68899999998888877
Q ss_pred EcCCCCCeEEEEEcCCCCcEEEEEeC---------------CCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEE
Q 001403 831 IMPPSPTATSLAFNPHDNNVIAIGMD---------------DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVS 895 (1084)
Q Consensus 831 ~~~~~~~i~~l~~s~~d~~~la~g~~---------------dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s 895 (1084)
+. +...+.+++|+| ++++|++++. ||.|++||+.+++.+..+.+ ...+.+++|+|||++|++
T Consensus 341 ~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~ 417 (433)
T 3bws_A 341 IP-VFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVI 417 (433)
T ss_dssp EE-CSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEE
T ss_pred ec-CCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEE
Confidence 76 667899999999 8888888876 57999999999999888876 457999999999999998
Q ss_pred EeC-CCcEEEEeCCC
Q 001403 896 SGG-DAQIFVWDVDG 909 (1084)
Q Consensus 896 ~s~-dg~I~iwd~~~ 909 (1084)
++. |+.|++|+++.
T Consensus 418 ~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 418 SDFLDHQIRVYRRDG 432 (433)
T ss_dssp EETTTTEEEEEEETT
T ss_pred EECCCCeEEEEEecC
Confidence 875 99999999874
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=274.96 Aligned_cols=253 Identities=16% Similarity=0.314 Sum_probs=213.4
Q ss_pred eecCCCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEccCC-------ccccceeeeecccccEeEEEeecCCCcEEEEEEe
Q 001403 383 LVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG-------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 454 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspd-g~~las~~~dg~v~iwd~~~~-------~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~ 454 (1084)
...+|...|++++|+|+ +.+||+++.+|.|++||+.+. ........+.+|...|.+++|+|++.. +|++|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~ 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSAS 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEEC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEe
Confidence 35679999999999997 789999999999999999862 112344478899999999999999876 689999
Q ss_pred CCCcEEEEECCCCce-------eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC---CceEeecCCCCeE
Q 001403 455 DDKTIKVWDAVTGSR-------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGC 524 (1084)
Q Consensus 455 ~d~~i~vwd~~~g~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~i 524 (1084)
.||+|++||+.++.. ...+.+|...|.+++|++. ++.++++++.||.|++||++.. .....+..+...+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999987432 4567789999999999764 4579999999999999999987 4566777888999
Q ss_pred EEEEEcCCCC-EEEEEeeCCCCCeeEEEecCCC-ceEeeeeeccccccCceEEEEEcCCCC-EEEEEECCCcEEEEECCC
Q 001403 525 TRMAYSANGR-RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNK 601 (1084)
Q Consensus 525 ~~~~~s~d~~-~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~ 601 (1084)
.+++|+|++. ++++++. ++.|++||+++ +..+..+..|. ..|.+++|+|+++ .+++++.||.|++||+..
T Consensus 281 ~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHK---DEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp EEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCS---SCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred EEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCC---CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 9999999998 5777765 67799999998 56778888877 8999999999985 688999999999999987
Q ss_pred --------------CeEEEEEcCCCCCCCcceEEEecCCC-EEEEEECCCeEEEEEcCCC
Q 001403 602 --------------VQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES 646 (1084)
Q Consensus 602 --------------~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~ 646 (1084)
.+.+..+..+. ..|.+++|+|++. ++++++.||.|++|++...
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 354 IGEEQSTEDAEDGPPELLFIHGGHT--AKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TTCCCCHHHHHHCCTTEEEECCCCS--SCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CccccCccccccCCcceEEEcCCCC--CCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 25555555443 4699999999999 9999999999999998754
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-26 Score=262.41 Aligned_cols=279 Identities=11% Similarity=0.096 Sum_probs=224.7
Q ss_pred ceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE-EEEeCCCEEEEEEccCCccccc
Q 001403 347 HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHGGSDARQ 425 (1084)
Q Consensus 347 ~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l-as~~~dg~v~iwd~~~~~~~~~ 425 (1084)
.+++++..| +.|++||+.++..... +.+| ..+.+++|+|+|++| ++++.|+.|++||+.+++.+.
T Consensus 3 ~l~vs~~~d---------~~v~v~d~~~~~~~~~---~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~- 68 (391)
T 1l0q_A 3 FAYIANSES---------DNISVIDVTSNKVTAT---IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA- 68 (391)
T ss_dssp EEEEEETTT---------TEEEEEETTTTEEEEE---EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE-
T ss_pred EEEEEcCCC---------CEEEEEECCCCeEEEE---eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEE-
Confidence 456677666 9999999988765433 4445 458999999999987 566689999999999987654
Q ss_pred eeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEE-EEEecCCeEE
Q 001403 426 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIK 504 (1084)
Q Consensus 426 ~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~ 504 (1084)
.+..+. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..| ..+.+++|++ +++.+ ++++.++.|+
T Consensus 69 --~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~~~~~~~v~ 141 (391)
T 1l0q_A 69 --TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVTNNGDKTVS 141 (391)
T ss_dssp --EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEEETTTTEEE
T ss_pred --EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEEeCCCCEEE
Confidence 444444 8999999999994 3355667899999999999998888755 4678999955 56666 7888899999
Q ss_pred EEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCE
Q 001403 505 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 584 (1084)
Q Consensus 505 iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 584 (1084)
+||+.+++....+..+ ..+.+++|+|+++.+++++. .++.|++||+.+++.+..+..+ ..+.+++|+|++++
T Consensus 142 ~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~~~~g~~ 213 (391)
T 1l0q_A 142 VINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVE----AAPSGIAVNPEGTK 213 (391)
T ss_dssp EEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SEEEEEEECTTSSE
T ss_pred EEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecC----CCccceEECCCCCE
Confidence 9999988777766654 45689999999999865442 2677999999999888777643 47899999999999
Q ss_pred EEEEE---CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEE-EEEECCCeEEEEEcCCCCeeeecccccc
Q 001403 585 ILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSD 657 (1084)
Q Consensus 585 l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 657 (1084)
+++++ .++.|++||+.+++.+..+..+.. +.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+..
T Consensus 214 l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 214 AYVTNVDKYFNTVSMIDTGTNKITARIPVGPD---PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp EEEEEECSSCCEEEEEETTTTEEEEEEECCSS---EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred EEEEecCcCCCcEEEEECCCCeEEEEEecCCC---ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 99987 789999999999999988876543 6889999999987 5667899999999999988777665443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-29 Score=304.53 Aligned_cols=255 Identities=17% Similarity=0.301 Sum_probs=215.0
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC--CCcEEEEEEeCCCcEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 460 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~l~s~~~d~~i~ 460 (1084)
++.+|.+.|++++|+|+|++|++|+.||+|+|||+.++.. .....+.+|.++|++++|+|+ ++ ++++|+.||+|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 3678999999999999999999999999999999985432 233478899999999999998 77 899999999999
Q ss_pred EEECCCCc--eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCC--ceEeecCCCCeEEEEEEcC-----
Q 001403 461 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA----- 531 (1084)
Q Consensus 461 vwd~~~g~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~----- 531 (1084)
+||+.+++ .+..+.+|...|.+++|++..++..+++++.||.|++||+.... ....+..+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999987 77888999999999999775437899999999999999998773 3456677888999999999
Q ss_pred --------CCCEEEEEeeCCCCCeeEEEecCCCc----eEeeeeeccccccCceEEEEEcCC---CCEEEEEECCCcEEE
Q 001403 532 --------NGRRLFSCGTSKEGESFLVEWNESEG----AIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKI 596 (1084)
Q Consensus 532 --------d~~~l~~~~~~~~~~~~i~~wd~~~~----~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~i 596 (1084)
++..+++++. ++.|++||+.++ .....+.+|. ..|.+++|+|+ ++++++++.||.|++
T Consensus 161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~~~~l~s~s~Dg~I~i 233 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCII 233 (753)
T ss_dssp ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCC---CcEEEEEeccCCCCCCEEEEEecCCEEEE
Confidence 5899999986 667999999877 5566777777 89999999999 899999999999999
Q ss_pred EECCCCeEE---EEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCC
Q 001403 597 WDMNKVQLL---TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 647 (1084)
Q Consensus 597 wd~~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 647 (1084)
||+.++... .......+...|.+++|+|+|+++++++.||.|++|++..+.
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 999886421 112222344568999999999999999999999999998653
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-27 Score=261.28 Aligned_cols=298 Identities=13% Similarity=0.135 Sum_probs=216.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
..+|...|.+++|||||++||+|+.++ ++|||+++++... . .+...+..+++.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 466999999999999999999998876 7899998765332 2 22235888999998883 346677889999999
Q ss_pred CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC-CceEeecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001403 464 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
+.+++.+..+. |...|.++++++ + .++++ .|+.|++||+.+. +....+.. ....+++++ .++++++.
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg- 155 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNE- 155 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEES-
T ss_pred CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCC-
Confidence 99999999887 677999999854 3 34443 5889999999987 55444433 444566777 67776522
Q ss_pred CCCCeeEEEecCCCce----------------EeeeeeccccccCceEEEEEcCCCCEEEEEECCCc-EEEEECCCCeEE
Q 001403 543 KEGESFLVEWNESEGA----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLL 605 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~~~----------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~ 605 (1084)
..++.|++||+.+++ .+..+.+|. ..|.+++|+|++++|++|+.||+ |++||+.+++.+
T Consensus 156 -~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~---~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~ 231 (355)
T 3vu4_A 156 -FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT---NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV 231 (355)
T ss_dssp -SCTTCEEEEECCC------------------CCEEECCCS---SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE
T ss_pred -CcCcEEEEEECCCCCccccccccccccccCcccEEEEccC---CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 126679999999875 267778887 89999999999999999999998 999999999999
Q ss_pred EEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCee--eecccc-----ccc---eeEEEEcCCCceeeeec
Q 001403 606 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV--DAAGVL-----SDN---LRKLSVNPISTVTGAGI 675 (1084)
Q Consensus 606 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~-----~~~---i~~~~~~p~~~~~~~~~ 675 (1084)
..+....+...|.+++|+|++++|++++.|+.|++||+...... ..+... ... +....+.+. ...
T Consensus 232 ~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 306 (355)
T 3vu4_A 232 REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVD-----KHV 306 (355)
T ss_dssp EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCC-----TTC
T ss_pred EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccC-----CCC
Confidence 99973223346999999999999999999999999999865321 111110 000 111111100 001
Q ss_pred cCceeEecCCCCCCCCccceecccCccccccceeecCc
Q 001403 676 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS 713 (1084)
Q Consensus 676 ~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~ 713 (1084)
....+++ +++++.+++++.||.+++|++......
T Consensus 307 ~~~~~a~----~~d~~~l~~~~~dg~~~~~~~~~~~~~ 340 (355)
T 3vu4_A 307 RGCKIAW----ISESSLVVVWPHTRMIETFKVVFDDEM 340 (355)
T ss_dssp CCCEEEE----SSSSEEEEEETTTTEEEEEEEEEETTT
T ss_pred CceEEEE----eCCCCEEEEEeCCCeEEEEEEEcCCCC
Confidence 1134455 678999999999999999998755443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=300.62 Aligned_cols=257 Identities=13% Similarity=0.156 Sum_probs=212.9
Q ss_pred eeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC--CCEEE
Q 001403 327 AQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--GSLLG 404 (1084)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd--g~~la 404 (1084)
+.++.+|.+.|.+++|+|||++||+|..| |+|+|||+.+...... ..+.+|...|.+++|+|+ +++|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~d---------g~I~vwd~~~~~~~~~-~~l~~h~~~V~~l~~s~~~~~~~l~ 71 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSD---------KTIKIFEVEGETHKLI-DTLTGHEGPVWRVDWAHPKFGTILA 71 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETT---------TEEEEEEEETTEEEEE-EEECCCSSCEEEEEECCTTSCSEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECC---------CcEEEEecCCCCCccc-eeccCCcCceEEEEecCCCCCCEEE
Confidence 45789999999999999999999999888 9999999975433222 237889999999999998 99999
Q ss_pred EEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC--CCcEEEEEEeCCCcEEEEECCCCc--eeeEeccCCCcE
Q 001403 405 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPV 480 (1084)
Q Consensus 405 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~l~s~~~d~~i~vwd~~~g~--~~~~~~~h~~~v 480 (1084)
+|+.||.|++||+.+++. .....+.+|...|++++|+|+ +. .+++|+.||.|++||+.++. ....+.+|...|
T Consensus 72 s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v 148 (753)
T 3jro_A 72 SCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 148 (753)
T ss_dssp EEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCE
T ss_pred EEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEeecCCCce
Confidence 999999999999998752 123367789999999999999 88 89999999999999998873 445678899999
Q ss_pred EEEeecccC-----------CCcEEEEEecCCeEEEEECCCCCc----eEeecCCCCeEEEEEEcCC---CCEEEEEeeC
Q 001403 481 YSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSAN---GRRLFSCGTS 542 (1084)
Q Consensus 481 ~~~~~~~~~-----------~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~d---~~~l~~~~~~ 542 (1084)
.+++|+|.. ++.++++++.||.|++||+..... ...+..|...|.+++|+|+ ++++++++.
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~- 227 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ- 227 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES-
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec-
Confidence 999997631 468999999999999999987743 4466788899999999999 899999986
Q ss_pred CCCCeeEEEecCCCceE-----eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 001403 543 KEGESFLVEWNESEGAI-----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 603 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 603 (1084)
++.|++||+.+++. ......+. ..|.+++|+|+++++++++.||.|++|++.++.
T Consensus 228 ---Dg~I~iwd~~~~~~~~~~~~~~~~~~~---~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 228 ---DRTCIIWTQDNEQGPWKKTLLKEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ---SSCEEEEEESSSSSCCBCCBSSSSCCS---SCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ---CCEEEEecCCCCCCcceeEEeccCCCC---CceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 66799999988642 22222333 789999999999999999999999999998643
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-27 Score=273.11 Aligned_cols=265 Identities=15% Similarity=0.091 Sum_probs=220.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeee--------------------------------------
Q 001403 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-------------------------------------- 430 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~-------------------------------------- 430 (1084)
.++.+++|+|||++|+++ .++.|++||+.+|+....+..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478999999999976666 57789999999998221111222
Q ss_pred ----------------cccccEeEEEeecCCCcEE-EEEEeCCCcEEEEECC--CCceeeEec--cCCCcEEEEeecccC
Q 001403 431 ----------------AHVGNVNDLAFSAPCKQIS-VITCGDDKTIKVWDAV--TGSRTYSFE--GHGAPVYSLCPHAKE 489 (1084)
Q Consensus 431 ----------------~h~~~V~~l~~s~d~~~l~-l~s~~~d~~i~vwd~~--~g~~~~~~~--~h~~~v~~~~~~~~~ 489 (1084)
+|.+.|.+++|+|+++ + +++++.|++|++||+. +++.+..+. .|...|.+++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-- 159 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-- 159 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSS--EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCC--EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--
Confidence 3444799999999999 5 4899999999999999 888888886 5778999999955
Q ss_pred CCcEEEEEecCCeEEEEECCCCCceE----eecCCCCeEEEEEEcCC---CCEEEEEeeCCCCCeeEEEecCCCceEeee
Q 001403 490 NIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 490 ~~~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~d---~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 562 (1084)
++.+|++++.+|.|++|++....... .+..+...|.+++|+|+ +++|++++. ++.|++||+.+++.+..
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDK 235 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEE
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeee
Confidence 67899999999999999998776543 56678889999999999 999999986 56799999999988777
Q ss_pred -eeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC-----------------------CCCCCcc
Q 001403 563 -YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----------------------GGLPENP 618 (1084)
Q Consensus 563 -~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~ 618 (1084)
+.+|. ..|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+ .....+.
T Consensus 236 ~~~~h~---~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 236 WLFGHK---HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp ECCCCS---SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred eecCCC---CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 55776 899999999 9999999999999999999999998887632 1123578
Q ss_pred eEEEecCCCEEEEEE-CCCeEEEEEc--CCC---CeeeeccccccceeEEEEcCC
Q 001403 619 RICFNKNGTLLAVIA-NENRIKILET--PES---NSVDAAGVLSDNLRKLSVNPI 667 (1084)
Q Consensus 619 ~v~~s~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~i~~~~~~p~ 667 (1084)
.++|+|+++++++++ .++.|++|++ .++ ..+..+..+ ..+.+++++|.
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~ 365 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND 365 (450)
T ss_dssp EEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence 999999999999999 8999999999 555 566666766 78899999864
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=265.64 Aligned_cols=278 Identities=12% Similarity=0.068 Sum_probs=211.0
Q ss_pred ecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcc
Q 001403 623 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 702 (1084)
Q Consensus 623 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 702 (1084)
.+++.++++|+.||.|++||+.+++.+..+. .
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~---------------------------------------------- 76 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTITTIT--T---------------------------------------------- 76 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEEEEE--E----------------------------------------------
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEEEEe--c----------------------------------------------
Confidence 3578899999999999999998876655443 1
Q ss_pred ccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCc
Q 001403 703 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 782 (1084)
Q Consensus 703 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1084)
..|.++.++|+ +++++.|+.+++|+... .+.+|+..++..
T Consensus 77 ------------------------~~v~~~~~~~~---~~s~s~D~~i~~w~~~~-------------~~~~~~~~~~~~ 116 (343)
T 3lrv_A 77 ------------------------PNPRTGGEHPA---IISRGPCNRLLLLYPGN-------------QITILDSKTNKV 116 (343)
T ss_dssp ------------------------ECCCTTCCCCS---EEEECSTTEEEEEETTT-------------EEEEEETTTCCE
T ss_pred ------------------------CCceeeeeCCc---eEEecCCCeEEEEEccC-------------ceEEeecCCcce
Confidence 11222334444 67777777777777543 245577766664
Q ss_pred cccccCcCCCCCCCccEEEecC--CCCEEEEEe-CCeEEEEEcCCceeEEEEcC-CCCCeEEEEEcCCCCcEEEEEeCCC
Q 001403 783 FMVNDTTDSNSQEAVPCFALSK--NDAYLFSAS-GGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDS 858 (1084)
Q Consensus 783 ~~~~~~~~~~~~~~v~~l~~s~--dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~la~g~~dg 858 (1084)
+..... +|...|.+++++| +++++++++ ||+|++||+.+++....... +...+.+++|+| ++.+|++|+.||
T Consensus 117 ~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg 192 (343)
T 3lrv_A 117 LREIEV---DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDG 192 (343)
T ss_dssp EEEEEC---CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTS
T ss_pred eEEeec---CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCC
Confidence 444332 3678899999999 999999988 89999999999998777644 455899999999 899999999999
Q ss_pred eEEEEEcCCceee-eeecc-cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCc--eEE
Q 001403 859 TILIYNARSSEVI-SKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE--THI 934 (1084)
Q Consensus 859 ~i~iwd~~~~~~~-~~l~~-h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v--~~~ 934 (1084)
.|++||+.+++.+ ..+.+ |.++|++++|+|++.+|++++ |++|++||+.+++... .+.....+.. .+ .++
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~--~~~~~~~~~~---~~~~~~~ 266 (343)
T 3lrv_A 193 ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL--AYPTYTIPEF---KTGTVTY 266 (343)
T ss_dssp CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB--SSCCCBC--------CCEEE
T ss_pred EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce--eecccccccc---cccceEE
Confidence 9999999999887 78888 999999999999999999999 5599999999865322 1222212221 22 469
Q ss_pred EEccCCCEEEEE-e-CCeEEEEEcCCcceeeEeecCCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEEcCCCc
Q 001403 935 QFHKDQTRFLLV-H-ETHLAIYEAEELTCLKQWFPISSVPISQATFSC---DCRMVFTSFVDGTLSIHEASNLE 1003 (1084)
Q Consensus 935 ~~s~dg~~la~~-~-d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~---dg~~l~t~~~dg~i~vwd~~~~~ 1003 (1084)
+|+|+|++|+++ . ++.+++|++.++...... .++..++|++ +++.+++++.||.+.++-.....
T Consensus 267 ~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~ 335 (343)
T 3lrv_A 267 DIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDS 335 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEEECSSE
T ss_pred EECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEEecCCe
Confidence 999999999994 4 899999999766654432 4678889998 99999999999999988655443
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-26 Score=271.42 Aligned_cols=343 Identities=9% Similarity=0.077 Sum_probs=257.9
Q ss_pred EEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEEC--CCCeEE
Q 001403 528 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM--NKVQLL 605 (1084)
Q Consensus 528 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~--~~~~~~ 605 (1084)
+++|++..+++.+. ++.|.+||..+++++..+.... .+..++|+|+++++++++.|+.|++||+ .+++.+
T Consensus 144 ~~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~----~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~ 215 (543)
T 1nir_A 144 DLDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV 215 (543)
T ss_dssp CCCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST----TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred ccCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc----ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE
Confidence 37788877777654 6779999999999999988544 3889999999999999999999999999 899998
Q ss_pred EEEcCCCCCCCcceEEEec----CCCEEEEEEC-CCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCcee
Q 001403 606 TTIDAGGGLPENPRICFNK----NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 680 (1084)
Q Consensus 606 ~~~~~~~~~~~v~~v~~s~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~ 680 (1084)
..+.... .+..++|+| ||+++++++. ++.|.+||..+++.+..+..+...+....+
T Consensus 216 ~~i~~g~---~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~---------------- 276 (543)
T 1nir_A 216 AEIKIGI---EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY---------------- 276 (543)
T ss_dssp EEEECCS---EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE----------------
T ss_pred EEEecCC---CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccc----------------
Confidence 8887433 368999999 9999999885 899999999988777655421110000000
Q ss_pred EecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEe-ecCCceEEeeccCCc
Q 001403 681 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL-ASNGVHLMWRWPRND 759 (1084)
Q Consensus 681 ~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~-~~dg~i~vw~~~~~~ 759 (1084)
.....+..+.+++++..+++. ..++.|.+|++...+
T Consensus 277 -------------------------------------------~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 277 -------------------------------------------HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID 313 (543)
T ss_dssp -------------------------------------------ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred -------------------------------------------ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence 012367889999987766544 557889888865432
Q ss_pred cCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--CCeEEEEEcCCceeEEEEcC----
Q 001403 760 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP---- 833 (1084)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~---- 833 (1084)
. +....+ .+...+..++|+|||+++++++ +++|.+||+.+++++..+..
T Consensus 314 ~----------------------l~~~~i---~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p 368 (543)
T 1nir_A 314 N----------------------LTVTSI---GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP 368 (543)
T ss_dssp S----------------------CEEEEE---ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred c----------------------ceeEEe---ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence 1 110001 1345677899999999887765 68999999999999988874
Q ss_pred CCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEEcCC-------ceeeeeecccccCEEEEEEcCCCCEEEEEe-------C
Q 001403 834 PSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSG-------G 898 (1084)
Q Consensus 834 ~~~~i~~l~~s~~d~~~la~g~-~dg~i~iwd~~~-------~~~~~~l~~h~~~V~~l~~spd~~~l~s~s-------~ 898 (1084)
|.+....+ ++|+++.+++++. .|++|.+||+.+ ++++.++.+|.+.+..++|+||+++|++++ .
T Consensus 369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI 447 (543)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence 44433333 5774577888876 689999999998 899999999999999999999999999987 2
Q ss_pred CCcEEEEeCCCCcee-eeeeeecCCCCccCCCCceEEEEccCCCEEEEE------eCCeEEEEEcCCcceeeEee
Q 001403 899 DAQIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWF 966 (1084)
Q Consensus 899 dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~------~d~~i~vwd~~~~~~~~~~~ 966 (1084)
+++|.+||+.+++.. ....+....+.......+..++|+|||+++.++ .++.|.|||..+++++..+.
T Consensus 448 ~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 448 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 779999999998754 211111100001112368999999999999974 26899999999999988754
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-27 Score=270.02 Aligned_cols=258 Identities=16% Similarity=0.225 Sum_probs=213.9
Q ss_pred eeecccCCCCceEEEEcCC-CceeeeecccccCccccccceEEEEEcCCc-------cccceeeeecCCCCCeEEEEEcC
Q 001403 327 AQTLIEGSSSPMSMDFHPV-QHTLLLGLWDVNSGQKLFIRNFKVWDIGAC-------SMLFKTALVRDPGVSVNRVVWSP 398 (1084)
Q Consensus 327 ~~~l~~h~~~V~~v~~spd-g~~las~~~d~~sg~~~~~~~v~iwd~~~~-------~~~~~~~~~~~h~~~V~~v~fsp 398 (1084)
...+..|.+.|.+++|+|+ +.+||++..| +.|+|||+.+. ........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~d---------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPS---------SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSS---------SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCC---------CcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCC
Confidence 3456689999999999997 7899998877 99999999762 11112233678999999999999
Q ss_pred CCC-EEEEEeCCCEEEEEEccCCccc----cceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC---cee
Q 001403 399 DGS-LLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRT 470 (1084)
Q Consensus 399 dg~-~las~~~dg~v~iwd~~~~~~~----~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g---~~~ 470 (1084)
++. +|++|+.||.|++||+.++... .....+.+|...|.+++|+|++.. ++++++.|+.|++||++++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 9999999999999999885331 223456789999999999995444 8999999999999999987 577
Q ss_pred eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCC-CCceEeecCCCCeEEEEEEcCCCC-EEEEEeeCCCCCee
Q 001403 471 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESF 548 (1084)
Q Consensus 471 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~-~l~~~~~~~~~~~~ 548 (1084)
..+..|...|.+++|++.. ..++++++.||.|++||++. ......+..+...|.+++|+|+++ ++++++. ++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~ 345 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRR 345 (430)
T ss_dssp EEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSC
T ss_pred eEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCc
Confidence 8888999999999997642 24799999999999999998 455777888899999999999996 5777764 667
Q ss_pred EEEecCCC--------------ceEeeeeeccccccCceEEEEEcCCCC-EEEEEECCCcEEEEECCCC
Q 001403 549 LVEWNESE--------------GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV 602 (1084)
Q Consensus 549 i~~wd~~~--------------~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~ 602 (1084)
|.+||+.. .+.+..+.+|. ..|..++|+|+++ .+++++.||.|++|++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT---AKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS---SCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCC---CCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999987 35566666666 8899999999999 8999999999999998753
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=271.52 Aligned_cols=245 Identities=11% Similarity=0.084 Sum_probs=174.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCcccc--ceeeeecccccEeEEEeec--------CCCcEEEEEEeC
Q 001403 386 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSA--------PCKQISVITCGD 455 (1084)
Q Consensus 386 ~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~--~~~~l~~h~~~V~~l~~s~--------d~~~l~l~s~~~ 455 (1084)
.|...+....+++++.+||+++.|++|+|||+.+++... ....+.+|.+.|++++|+| |++ +|++|+.
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~ 164 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGD 164 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEET
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEEC
Confidence 355556666677788999999999999999999886532 2235679999999999998 777 8999999
Q ss_pred CCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee------------------
Q 001403 456 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY------------------ 517 (1084)
Q Consensus 456 d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~------------------ 517 (1084)
|++|+|||+.++..+..+.+|..+|.+++|+|. +..+|++++.||+|++||+.+.+.....
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~ 243 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPS-NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP 243 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCC-CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence 999999999999988888899999999999764 2358999999999999999876543221
Q ss_pred -------cCCCCeEEEEEEc-CCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEE-------------
Q 001403 518 -------DAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVV------------- 576 (1084)
Q Consensus 518 -------~~~~~~i~~~~~s-~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~------------- 576 (1084)
..+...+.++.|+ +|++.+++++. ++.+++||+.+++....+..+. ..+..+
T Consensus 244 ~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~ 316 (393)
T 4gq1_A 244 LVNTCHSSGIASSLANVRWIGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDST---MKLGPKNLLPNVQGISLFP 316 (393)
T ss_dssp GC------CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC----------------------CCSCSEEEECSSC
T ss_pred ceeeeecccccccceeeeeecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeec---CccccEEEccccccccccC
Confidence 2344567788876 79999999875 6779999999887766665544 222222
Q ss_pred -----EEcC--CCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 577 -----HFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 577 -----~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
.|+| ++.++++|+.||.|++||+.+++....+..+.. .|.+++|+|||++||+++.+| +.+|.+
T Consensus 317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 2332 233556688999999999999988877765544 699999999999999998765 555554
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-26 Score=264.81 Aligned_cols=330 Identities=13% Similarity=0.150 Sum_probs=248.8
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEc--CCCCeeeecccc
Q 001403 578 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET--PESNSVDAAGVL 655 (1084)
Q Consensus 578 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~ 655 (1084)
++|++..+++++.|++|.+||..+++++..+..... +..++|+|||+++++++.|+.|.+||+ .+++.+..+.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~---~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-- 219 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA---VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-- 219 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT---EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc---cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--
Confidence 788888888999999999999999999999874332 678999999999999999999999999 5554433221
Q ss_pred ccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEe
Q 001403 656 SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN 735 (1084)
Q Consensus 656 ~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 735 (1084)
+...+..++|+
T Consensus 220 ---------------------------------------------------------------------~g~~p~~va~s 230 (543)
T 1nir_A 220 ---------------------------------------------------------------------IGIEARSVESS 230 (543)
T ss_dssp ---------------------------------------------------------------------CCSEEEEEEEC
T ss_pred ---------------------------------------------------------------------cCCCcceEEeC
Confidence 12346788999
Q ss_pred c----CCCeEEEeec-CCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcC-------CCCCCCccEEEec
Q 001403 736 N----GGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD-------SNSQEAVPCFALS 803 (1084)
Q Consensus 736 ~----~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~l~~s 803 (1084)
| ||+++++++. ++.+.+||....+ ++......+ ......+.++.++
T Consensus 231 p~~~~dg~~l~v~~~~~~~v~v~D~~t~~----------------------~~~~i~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 231 KFKGYEDRYTIAGAYWPPQFAIMDGETLE----------------------PKQIVSTRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp CSTTCTTTEEEEEEEESSEEEEEETTTCC----------------------EEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred CCcCCCCCEEEEEEccCCeEEEEeccccc----------------------cceeecccCcccCccccccCCceEEEEEC
Confidence 9 9999988875 7889888754332 111111100 0023478899999
Q ss_pred CCCCEEEEEe--CCeEEEEEcCCceeEE--EEcCCCCCeEEEEEcCCCCcEEEE-EeCCCeEEEEEcCCceeeeeecc--
Q 001403 804 KNDAYLFSAS--GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEG-- 876 (1084)
Q Consensus 804 ~dg~~l~~~s--dg~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~la~-g~~dg~i~iwd~~~~~~~~~l~~-- 876 (1084)
|++..+++.. ++.|.+||+.+++.+. .+. +...+..++|+| +++++++ +..+++|.+||..+++++..+..
T Consensus 289 ~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~ 366 (543)
T 1nir_A 289 HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 366 (543)
T ss_dssp SSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred CCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCC
Confidence 9887766654 6999999998866543 443 556788899999 7886654 45689999999999999888774
Q ss_pred --cccCEEEEEEcCC-CCEEEEEe-CCCcEEEEeCCCCce--eeeeeeecCCCCccCCCCceEEEEccCCCEEEEEe---
Q 001403 877 --HSKRVTGLVFSDA-LNILVSSG-GDAQIFVWDVDGWGI--QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--- 947 (1084)
Q Consensus 877 --h~~~V~~l~~spd-~~~l~s~s-~dg~I~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--- 947 (1084)
|.+....+ ++|+ +.+++++. .|++|.+||+.+... ...++++...++.. .+..++|+|||++|+++.
T Consensus 367 ~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~---~~~~v~~~pdg~~l~v~~~~~ 442 (543)
T 1nir_A 367 TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG---GSLFIKTHPKSSHLYVDTTFN 442 (543)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS---CCCCEECCTTCCEEEECCTTC
T ss_pred CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC---CceEEEcCCCCCcEEEecCCC
Confidence 65544444 5677 66777775 689999999987210 01224444444433 577899999999999964
Q ss_pred -----CCeEEEEEcCCcceeeEee--------cCCCCCEEEEEEccCCCEEEEEe-----CCCcEEEEEcCCCceeEEec
Q 001403 948 -----ETHLAIYEAEELTCLKQWF--------PISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 948 -----d~~i~vwd~~~~~~~~~~~--------~~h~~~v~~l~fs~dg~~l~t~~-----~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
+++|.|||+.+++.....+ ..+...+..+.|+|||+.|+++. .|+.|.|||..+++++.++.
T Consensus 443 ~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 443 PDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp SSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 6799999999999874432 34578999999999999999763 47999999999999998887
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=262.03 Aligned_cols=271 Identities=10% Similarity=0.044 Sum_probs=213.3
Q ss_pred EEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEcc-
Q 001403 340 MDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH- 418 (1084)
Q Consensus 340 v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~- 418 (1084)
..+.+|+.+||+|+.| ++|++||+.++....... ...|.+++|+|+ +++++.|++|++|+..
T Consensus 42 ~~~~~d~~~l~sg~~D---------g~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~ 104 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCED---------GALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLLYPGN 104 (343)
T ss_dssp SSSSEEEEEEEEEEET---------TEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEEETTT
T ss_pred hhhcCCCCEEEEECCC---------CcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEEEccC
Confidence 3456799999999988 999999999876654432 457888899998 9999999999999766
Q ss_pred --------CCccccceeeeecccccEeEEEeec--CCCcEEEEEEeCCCcEEEEECCCCceeeEec-cCCCcEEEEeecc
Q 001403 419 --------GGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHA 487 (1084)
Q Consensus 419 --------~~~~~~~~~~l~~h~~~V~~l~~s~--d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~-~h~~~v~~~~~~~ 487 (1084)
+++.++. ...+|.+.|.+++|+| +++ ++++++.|++|++||+++++.+.... .|...|.+++|+|
T Consensus 105 ~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p 180 (343)
T 3lrv_A 105 QITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK 180 (343)
T ss_dssp EEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT
T ss_pred ceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC
Confidence 3332221 1226668999999999 999 89999999999999999999877664 4566899999955
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCCce-EeecC-CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeec
Q 001403 488 KENIHFIFSISVDGKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 565 (1084)
Q Consensus 488 ~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 565 (1084)
++.+|++|+.||.|++||+++++.. ..+.. |...|.+++|+|+|.+|++++. +.|++||+++++....+..
T Consensus 181 --dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-----~~v~iwd~~~~~~~~~~~~ 253 (343)
T 3lrv_A 181 --DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-----QTVVCFDLRKDVGTLAYPT 253 (343)
T ss_dssp --TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-----SBEEEEETTSSTTCBSSCC
T ss_pred --CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-----CeEEEEEcCCCCcceeecc
Confidence 7789999999999999999998877 67777 8899999999999999999982 2699999999887666554
Q ss_pred cccccCce--EEEEEcCCCCEEEEEEC-CCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec---CCCEEEEEECCCeEE
Q 001403 566 LQLQHNSV--SVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---NGTLLAVIANENRIK 639 (1084)
Q Consensus 566 ~~~~~~~v--~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~ 639 (1084)
+..+...+ .+++|+|++++|++++. |+.+++|++.+....... ..+..++|.+ +...+++++.|+.+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 327 (343)
T 3lrv_A 254 YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVVCGDGGIA 327 (343)
T ss_dssp CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEEEETTEEE
T ss_pred cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEEecCCceE
Confidence 32111333 46999999999999998 999999999765433222 1356677887 888999999999998
Q ss_pred EEEcC
Q 001403 640 ILETP 644 (1084)
Q Consensus 640 iwd~~ 644 (1084)
++-..
T Consensus 328 ~~~~~ 332 (343)
T 3lrv_A 328 AILKT 332 (343)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 87544
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=262.89 Aligned_cols=251 Identities=6% Similarity=-0.049 Sum_probs=178.4
Q ss_pred eeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccce--eeeecCCCCCeEEEEEcC------
Q 001403 327 AQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFK--TALVRDPGVSVNRVVWSP------ 398 (1084)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~--~~~~~~h~~~V~~v~fsp------ 398 (1084)
......|...+....+++++.+||+++.| ++|+|||+.++..... ...+.||.+.|.+++|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~las~~~d---------~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~ 152 (393)
T 4gq1_A 82 SYSENLHDGDGNVNSSPVYSLFLACVCQD---------NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADN 152 (393)
T ss_dssp EEECC----------CCEEEEEEEEEETT---------SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTC
T ss_pred cccccccCCCcceeecCCCCCEEEEEeCC---------CcEEEEECCCCccceeeeecccCCCCCceEEEEEcccccccc
Confidence 34445667677788889999999999988 9999999987654322 234789999999999998
Q ss_pred --CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe---
Q 001403 399 --DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--- 473 (1084)
Q Consensus 399 --dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~--- 473 (1084)
||++||+|+.|++|+|||+.++..+. .+.+|..+|.+++|+|++.. +|++++.|++|++||+.+++.....
T Consensus 153 ~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~~ 228 (393)
T 4gq1_A 153 RLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQT 228 (393)
T ss_dssp SEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC--------
T ss_pred CCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCccccccccc
Confidence 89999999999999999998876444 56689999999999999864 7999999999999999987654322
Q ss_pred ----------------------ccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEE---
Q 001403 474 ----------------------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA--- 528 (1084)
Q Consensus 474 ----------------------~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~--- 528 (1084)
.+|...+.++.|. .+++..+++++.|+++++||+........+..+...+..+.
T Consensus 229 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~ 307 (393)
T 4gq1_A 229 ELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI-GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLP 307 (393)
T ss_dssp --CSCCCSEEEESGGGC------CCSSSCSEEEEE-TTTTCEEEEECTTSEEEEEEC-------------------CCSC
T ss_pred CCcccceEEecccccceeeeecccccccceeeeee-cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcc
Confidence 3577788888885 35778999999999999999987665544444333333322
Q ss_pred ---------------Ec-CCCCE-EEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC
Q 001403 529 ---------------YS-ANGRR-LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 591 (1084)
Q Consensus 529 ---------------~s-~d~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 591 (1084)
++ +.+.. +++++. ++.|++||..+++....+..|. .+|.+++|+|||++|++++++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~----Dg~V~lwd~~~~~~~~~~~~~~---~~V~svafspdG~~LA~as~~ 380 (393)
T 4gq1_A 308 NVQGISLFPSLLGACPHPRYMDYFATAHSQ----HGLIQLINTYEKDSNSIPIQLG---MPIVDFCWHQDGSHLAIATEG 380 (393)
T ss_dssp SEEEECSSCCSSCCEECSSCTTEEEEEETT----TTEEEEEETTCTTCCEEEEECS---SCEEEEEECTTSSEEEEEESS
T ss_pred ccccccccCcceeEEEccCCCCEEEEEECC----CCEEEEEECCCCcEEEEecCCC---CcEEEEEEcCCCCEEEEEeCC
Confidence 22 23344 444443 7789999999999888888877 899999999999999999977
Q ss_pred CcEEEEEC
Q 001403 592 HVIKIWDM 599 (1084)
Q Consensus 592 g~i~iwd~ 599 (1084)
| +.+|.+
T Consensus 381 G-v~lvrL 387 (393)
T 4gq1_A 381 S-VLLTRL 387 (393)
T ss_dssp E-EEEEEE
T ss_pred C-eEEEEE
Confidence 6 555554
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-24 Score=247.64 Aligned_cols=313 Identities=8% Similarity=0.029 Sum_probs=240.6
Q ss_pred CCCceEEEEcCCCc-eeeeecccccCccccccceEEEEEc--CCccccceeeeecCCCCCeEEEEEcC------------
Q 001403 334 SSSPMSMDFHPVQH-TLLLGLWDVNSGQKLFIRNFKVWDI--GACSMLFKTALVRDPGVSVNRVVWSP------------ 398 (1084)
Q Consensus 334 ~~~V~~v~~spdg~-~las~~~d~~sg~~~~~~~v~iwd~--~~~~~~~~~~~~~~h~~~V~~v~fsp------------ 398 (1084)
...|...+|++.|. ++++|..+...+. ..+.+++|||+ .++...... .+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G-~~~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~g~~ 139 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDG-SYNVAYQLVDTGGAPGTVLAQN-SYKVNKQWLRYAGHTASDEVFEKLTGIK 139 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTS-CEEEEEEEEECSSSTTCEEEEE-EEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCC-eEEEEEEEEeCCCCCCCEEeee-EEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence 35788889999985 5557765422110 01238999999 777654332 3677888888888875
Q ss_pred --CCCEEEEEeCC------CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCC---cEEEEECCCC
Q 001403 399 --DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK---TIKVWDAVTG 467 (1084)
Q Consensus 399 --dg~~las~~~d------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~---~i~vwd~~~g 467 (1084)
.+..+++++.+ +.|++||++++. .+ .+.+|...|.+++|+|||+ .|++++.++ .|++||+.++
T Consensus 140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~~~~~~i~~~d~~tg 213 (415)
T 2hqs_A 140 GAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTFESGRSALVIQTLANG 213 (415)
T ss_dssp CCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTTC
T ss_pred CcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEecCCCcEEEEEECCCC
Confidence 26777777654 799999998643 33 5778999999999999999 788888775 9999999999
Q ss_pred ceeeEeccCCCcEEEEeecccCCCcEEE-EEecCCe--EEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001403 468 SRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 544 (1084)
Q Consensus 468 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 544 (1084)
+.. .+..|...+.+++|+| ||+.|+ +++.++. |++||+.+++. ..+..+...+.+++|+|||++|++++. .+
T Consensus 214 ~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~-~~ 288 (415)
T 2hqs_A 214 AVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSD-QA 288 (415)
T ss_dssp CEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEEC-TT
T ss_pred cEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEEC-CC
Confidence 875 5777888999999955 677776 6666655 99999987654 556667778999999999999998874 23
Q ss_pred CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC---CcEEEEECCCCeEEEEEcCCCCCCCcceEE
Q 001403 545 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRIC 621 (1084)
Q Consensus 545 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 621 (1084)
+...|++||+.+++.. .+..+. ..+..++|+|+|++|++++.+ ..|++||+.+++.. .+..+. .+.+++
T Consensus 289 g~~~i~~~d~~~~~~~-~l~~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~---~~~~~~ 360 (415)
T 2hqs_A 289 GRPQVYKVNINGGAPQ-RITWEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF---LDETPS 360 (415)
T ss_dssp SSCEEEEEETTSSCCE-ECCCSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS---SCEEEE
T ss_pred CCcEEEEEECCCCCEE-EEecCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC---CcCCeE
Confidence 3457999999888743 333343 578899999999999987754 58999999998874 343322 588999
Q ss_pred EecCCCEEEEEECCC---eEEEEEcCCCCeeeeccccccceeEEEEcCCC
Q 001403 622 FNKNGTLLAVIANEN---RIKILETPESNSVDAAGVLSDNLRKLSVNPIS 668 (1084)
Q Consensus 622 ~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~ 668 (1084)
|+|+|++|++++.++ .|++||+. +.....+..+.+.|.+++|+|..
T Consensus 361 ~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 361 LAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp ECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred EcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 999999999988876 79999987 55667788899999999999864
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-24 Score=241.59 Aligned_cols=305 Identities=13% Similarity=0.111 Sum_probs=226.6
Q ss_pred cccEeEEEeecCCCcEEEEEEe----CCC----cEEEEEC--CCCcee--eEeccCCCcEEEEeeccc------------
Q 001403 433 VGNVNDLAFSAPCKQISVITCG----DDK----TIKVWDA--VTGSRT--YSFEGHGAPVYSLCPHAK------------ 488 (1084)
Q Consensus 433 ~~~V~~l~~s~d~~~l~l~s~~----~d~----~i~vwd~--~~g~~~--~~~~~h~~~v~~~~~~~~------------ 488 (1084)
...+...+|++.|.. ++++|+ .|| +|++||+ .+++.+ ..+.+|...+..+++.+.
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 356778889999876 666775 467 8999999 999987 458889888887776531
Q ss_pred CCCcEEEEEecC------CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee
Q 001403 489 ENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 489 ~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 562 (1084)
..+..++.++.+ +.|++||++. .....+..+...+.+++|+|||+.|++++.++ +...|++||+.+++.. .
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-E
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-E
Confidence 013466666654 7999999985 44556666778899999999999999988532 2468999999998875 4
Q ss_pred eeccccccCceEEEEEcCCCCEEE-EEECCCc--EEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC-C--
Q 001403 563 YQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-N-- 636 (1084)
Q Consensus 563 ~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g-- 636 (1084)
+..+. ..+.+++|+|||+.|+ +++.++. |++||+.+++.. .+..+. ..+.+++|+|||+.|++++.+ +
T Consensus 218 l~~~~---~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 218 VASFP---RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGR--SNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp EECCS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCS--SCEEEEEECTTSSEEEEEECTTSSC
T ss_pred eecCC---CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCcCCC--CcccceEECCCCCEEEEEECCCCCc
Confidence 55555 6899999999999888 5665554 999999988763 444332 357899999999999888763 4
Q ss_pred eEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccce
Q 001403 637 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 716 (1084)
Q Consensus 637 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 716 (1084)
.|++||+.+++... +.
T Consensus 292 ~i~~~d~~~~~~~~-l~--------------------------------------------------------------- 307 (415)
T 2hqs_A 292 QVYKVNINGGAPQR-IT--------------------------------------------------------------- 307 (415)
T ss_dssp EEEEEETTSSCCEE-CC---------------------------------------------------------------
T ss_pred EEEEEECCCCCEEE-Ee---------------------------------------------------------------
Confidence 55666655432100 00
Q ss_pred eeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCC
Q 001403 717 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 796 (1084)
Q Consensus 717 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1084)
.+...
T Consensus 308 ---------------------------------------------------------------------------~~~~~ 312 (415)
T 2hqs_A 308 ---------------------------------------------------------------------------WEGSQ 312 (415)
T ss_dssp ---------------------------------------------------------------------------CSSSE
T ss_pred ---------------------------------------------------------------------------cCCCc
Confidence 02223
Q ss_pred ccEEEecCCCCEEEEEe-C---CeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCC---eEEEEEcCCce
Q 001403 797 VPCFALSKNDAYLFSAS-G---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSSE 869 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~s-d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg---~i~iwd~~~~~ 869 (1084)
+.+++|+|||++|++++ + ..|.+||+.+++.. .+..+. .+.+++|+| ++++|++++.++ .|++||+. ++
T Consensus 313 ~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~ 388 (415)
T 2hqs_A 313 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GR 388 (415)
T ss_dssp EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SC
T ss_pred ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CC
Confidence 44566777777776665 2 47999999888763 455454 899999999 899888888777 89999987 56
Q ss_pred eeeeecccccCEEEEEEcCCC
Q 001403 870 VISKLEGHSKRVTGLVFSDAL 890 (1084)
Q Consensus 870 ~~~~l~~h~~~V~~l~~spd~ 890 (1084)
....+.+|.+.|.+++|+|.-
T Consensus 389 ~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 389 FKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp CEEECCCSSSEEEEEEECCCC
T ss_pred cEEEeeCCCCCCcCCcccccc
Confidence 678889999999999999864
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-23 Score=259.83 Aligned_cols=292 Identities=13% Similarity=0.085 Sum_probs=214.4
Q ss_pred CCCceEEEEcCCCceeeeecc-cccCccccccceEEEEEcCCccccceeeeecCCC----------------------CC
Q 001403 334 SSSPMSMDFHPVQHTLLLGLW-DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG----------------------VS 390 (1084)
Q Consensus 334 ~~~V~~v~~spdg~~las~~~-d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~----------------------~~ 390 (1084)
...|.+++|||||++||++.. |-..+ ...|.+||+.++....... ..++. ..
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~----~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRN----QLDLWSYDIGSGQTRLLVD-SKVVLPGTETLSDEEKARRERQRIAAMTG 110 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTT----EEEEEEEETTTCCEEEEEC-GGGTC--------------------CCEE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCc----ccEEEEEECCCCceeEccc-hhhcccccccccchhhhhhhhhhhccccC
Confidence 347999999999999999876 51000 1389999998865432211 11122 23
Q ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEEccCCc--cccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 391 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 391 V~~v~fspdg~~las~~~dg~v~iwd~~~~~--~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
|.+++|||||++|++++. +.|.+||+.++. ... .+..|...+.+++|||||+ .|+.++ ++.|.+||+.+++
T Consensus 111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGR 183 (741)
T ss_dssp SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTE
T ss_pred cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCC
Confidence 889999999999999987 899999999882 223 4667888899999999999 677776 5699999999988
Q ss_pred eeeEeccCCCc----------------EEEEeecccCCCcEEEEEecCC-------------------------------
Q 001403 469 RTYSFEGHGAP----------------VYSLCPHAKENIHFIFSISVDG------------------------------- 501 (1084)
Q Consensus 469 ~~~~~~~h~~~----------------v~~~~~~~~~~~~~l~s~s~dg------------------------------- 501 (1084)
.......+... +.+++| ++||++|++++.|+
T Consensus 184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred EEEeccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 76555444433 356778 45778899888765
Q ss_pred --eEEEEECCC-CCceEeec--CCCCeEEEEEEcCCCCEEEEEeeC-CCCCeeEEEecCCCceEeeeeeccccccC---c
Q 001403 502 --KIKAWLYDS-LGARVDYD--APGLGCTRMAYSANGRRLFSCGTS-KEGESFLVEWNESEGAIKRTYQGLQLQHN---S 572 (1084)
Q Consensus 502 --~i~iwd~~~-~~~~~~~~--~~~~~i~~~~~s~d~~~l~~~~~~-~~~~~~i~~wd~~~~~~~~~~~~~~~~~~---~ 572 (1084)
.|.+||+.+ ++...... .+...+..++| |||++|++++.+ ...+..|++||+.+++....+..+. .. .
T Consensus 262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~ 338 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--PTWVPL 338 (741)
T ss_dssp EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--SSCCCC
T ss_pred eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--CCcCCc
Confidence 788899887 66544332 35568899999 999999987652 2346789999999998877776554 11 3
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECC-CCeEEEEEcCCCCCCCcceE-EEecCCCEEEEEEC-CC--eEEEEEcCC
Q 001403 573 VSVVHFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIAN-EN--RIKILETPE 645 (1084)
Q Consensus 573 v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~~~~~-dg--~i~iwd~~~ 645 (1084)
+..++|+|||+.+++++.||.+++|.+. ++. ...+..+. ..+..+ .|+|+|+.++..+. ++ .+++|++..
T Consensus 339 ~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~--~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 339 HNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGN--WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSS--SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecc--eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 4678999999988889999988888765 344 55555432 346666 59999998765554 44 788888753
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-23 Score=254.53 Aligned_cols=330 Identities=12% Similarity=0.017 Sum_probs=237.1
Q ss_pred cccEeEEEeecCCCcEEEEEEeC-CC-----cEEEEECCCCceeeEeccCCCc------------------------EEE
Q 001403 433 VGNVNDLAFSAPCKQISVITCGD-DK-----TIKVWDAVTGSRTYSFEGHGAP------------------------VYS 482 (1084)
Q Consensus 433 ~~~V~~l~~s~d~~~l~l~s~~~-d~-----~i~vwd~~~g~~~~~~~~h~~~------------------------v~~ 482 (1084)
...|.+++|||||+ .|++++. |+ .|++||+.+++....+..+... +.+
T Consensus 36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 34689999999999 7888887 88 8999999999887776654332 677
Q ss_pred EeecccCCCcEEEEEecCCeEEEEECCCCC--ceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 483 LCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 483 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
++| ++||++|++++. +.|++||+.++. ....+..+...+..++|||||++|++++ ++.|++||+.+++..
T Consensus 114 ~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-----~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 114 YQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-----GRNLWVIDLASGRQM 185 (741)
T ss_dssp CEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-----TTEEEEEETTTTEEE
T ss_pred eEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-----CCcEEEEecCCCCEE
Confidence 888 457889998886 999999998873 4445566667899999999999999986 346999999998876
Q ss_pred eeeecccc-------------ccCceEEEEEcCCCCEEEEEECCC---------------------------------cE
Q 001403 561 RTYQGLQL-------------QHNSVSVVHFDTAKDQILAAGDDH---------------------------------VI 594 (1084)
Q Consensus 561 ~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~dg---------------------------------~i 594 (1084)
.....+.. ....+..++|+|||++|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 65544330 001147799999999999987665 78
Q ss_pred EEEECCC-CeEEEEEcCCCCCCCcceEEEecCCCEEEEEEC-----CCeEEEEEcCCCCeeeeccccccceeEEEEcCCC
Q 001403 595 KIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-----ENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 668 (1084)
Q Consensus 595 ~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~ 668 (1084)
++||+.+ ++.........+...+..++| |||++|+++.. +..|++||+.+++.......+
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~------------- 331 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET------------- 331 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE-------------
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC-------------
Confidence 9999988 876554432123335788999 99999988764 456777776655322211100
Q ss_pred ceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCC
Q 001403 669 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 748 (1084)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 748 (1084)
.+
T Consensus 332 -----------------------------------------------------------------------------~~- 333 (741)
T 2ecf_A 332 -----------------------------------------------------------------------------SP- 333 (741)
T ss_dssp -----------------------------------------------------------------------------CS-
T ss_pred -----------------------------------------------------------------------------CC-
Confidence 00
Q ss_pred ceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcC-Cce
Q 001403 749 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVM-TFK 826 (1084)
Q Consensus 749 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~-~~~ 826 (1084)
.....+..++|+|||+++++++ +|.++||.+. +++
T Consensus 334 -------------------------------------------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~ 370 (741)
T 2ecf_A 334 -------------------------------------------TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK 370 (741)
T ss_dssp -------------------------------------------SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC
T ss_pred -------------------------------------------CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC
Confidence 0011234567788888666665 5666666654 344
Q ss_pred eEEEEcCCCCCeEEE-EEcCCCCcEE-EEEeCCC--eEEEEEcCC-ceeeeeecccccCEEEEEEcCCCCEEEEEeCC--
Q 001403 827 TILTIMPPSPTATSL-AFNPHDNNVI-AIGMDDS--TILIYNARS-SEVISKLEGHSKRVTGLVFSDALNILVSSGGD-- 899 (1084)
Q Consensus 827 ~~~~~~~~~~~i~~l-~~s~~d~~~l-a~g~~dg--~i~iwd~~~-~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~d-- 899 (1084)
...+..+...+..+ +|+| +++.| ++++.++ .++||++.. ++....+.+ ...+..++|||||++|+....+
T Consensus 371 -~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~ 447 (741)
T 2ecf_A 371 -AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNS 447 (741)
T ss_dssp -EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETT
T ss_pred -eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCC
Confidence 67777777788887 5999 67655 4555565 899999875 565667765 6678999999999999876544
Q ss_pred --CcEEEEeCCCC
Q 001403 900 --AQIFVWDVDGW 910 (1084)
Q Consensus 900 --g~I~iwd~~~~ 910 (1084)
..+.+|+...+
T Consensus 448 ~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 448 TPPQIELFRANGE 460 (741)
T ss_dssp EEEEEEEEETTSC
T ss_pred CCCeEEEEEcCCC
Confidence 46899998654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.3e-23 Score=253.21 Aligned_cols=385 Identities=11% Similarity=0.076 Sum_probs=254.1
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC---------Cc
Q 001403 523 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HV 593 (1084)
Q Consensus 523 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~ 593 (1084)
...+++|+|||+++++ +. ++.|++||+.+++....+..+......+..++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3567899999997755 32 5579999999998887777665211248999999999999998864 78
Q ss_pred EEEEECCCCeEEEEEcC-CCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceee
Q 001403 594 IKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 672 (1084)
Q Consensus 594 i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~ 672 (1084)
+++||+.+++. ..+.. ..+...+..++|||||+.|+.++. +.|++|+..+++.......+...+
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~------------- 157 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV------------- 157 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT-------------
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc-------------
Confidence 88999999886 33332 222234788999999999999887 799999998876544332211110
Q ss_pred eeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecC-CceE
Q 001403 673 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHL 751 (1084)
Q Consensus 673 ~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~ 751 (1084)
+..|.. -|-.. ..-...+.+++|||||+.|+.++.+ +.+.
T Consensus 158 --------------------~~~g~~-----~~v~~--------------ee~~~~~~~~~~SpDg~~la~~~~~~~~~~ 198 (723)
T 1xfd_A 158 --------------------IYNGLS-----DWLYE--------------EEILKTHIAHWWSPDGTRLAYAAINDSRVP 198 (723)
T ss_dssp --------------------EEEEEC-----CHHHH--------------HTTSSSSEEEEECTTSSEEEEEEEECTTSC
T ss_pred --------------------eECccc-----ceeEE--------------EEeccCcceEEECCCCCEEEEEEECCCccc
Confidence 000000 00000 0011245789999999999988765 4566
Q ss_pred EeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEE
Q 001403 752 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI 831 (1084)
Q Consensus 752 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~ 831 (1084)
+|++.... + .+...+..+.|+++|.. ..+..|.+||+.+++....+
T Consensus 199 ~~~~~~~~--------------------~-----------~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l 244 (723)
T 1xfd_A 199 IMELPTYT--------------------G-----------SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEM 244 (723)
T ss_dssp EEEECCCS--------------------S-----------SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEEC
T ss_pred eEEeeccC--------------------C-----------cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEe
Confidence 66543210 0 02234678888888863 12357999999998876666
Q ss_pred cCC------CCCeEEEEEcCCCCcEEEEEeC----CCeEEEEEcCCceeeeeeccc-ccCEE----EEEEcCCCCEEEE-
Q 001403 832 MPP------SPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSEVISKLEGH-SKRVT----GLVFSDALNILVS- 895 (1084)
Q Consensus 832 ~~~------~~~i~~l~~s~~d~~~la~g~~----dg~i~iwd~~~~~~~~~l~~h-~~~V~----~l~~spd~~~l~s- 895 (1084)
..+ ...+..++||| ||++|++... +..|++||+.+++....+..+ ...+. .++|||||+.|+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 245 MPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp CCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred eCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence 654 56789999999 8888877653 358999999999877666543 34343 7899999998875
Q ss_pred -EeCCC------cEEEEe-CCCCceeeeeeeecCCCCccCCCCceE-EEEccCCCEEEE-EeC---CeEEEEEcCCcc--
Q 001403 896 -SGGDA------QIFVWD-VDGWGIQTCRSLQTPDGVMTLAPSETH-IQFHKDQTRFLL-VHE---THLAIYEAEELT-- 960 (1084)
Q Consensus 896 -~s~dg------~I~iwd-~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~dg~~la~-~~d---~~i~vwd~~~~~-- 960 (1084)
+..++ .|.+|| ..++.......+ ..++. .+.. ++|||||+.|+. +.+ +.++||++....
T Consensus 324 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l--~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~ 397 (723)
T 1xfd_A 324 RAIPQGGRGKFYHITVSSSQPNSSNDNIQSI--TSGDW----DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF 397 (723)
T ss_dssp EEECCSSSSCEEEEEEECSSCCSSSCCCCBS--CCSSS----CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC
T ss_pred EecccCCCcceeEEEEEeccCCCCccceeEe--ecCCe----EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC
Confidence 45666 577777 344320000111 11222 2444 699999999987 444 679999986432
Q ss_pred eeeEeecC--CCCCEEEEEEccCCCEEEEEeCCC---cEEEEEcCCCceeEE
Q 001403 961 CLKQWFPI--SSVPISQATFSCDCRMVFTSFVDG---TLSIHEASNLEVQCR 1007 (1084)
Q Consensus 961 ~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg---~i~vwd~~~~~~~~~ 1007 (1084)
....+... |...+..++|||||++|+.....- .+.+++..++..+..
T Consensus 398 ~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~ 449 (723)
T 1xfd_A 398 NRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFD 449 (723)
T ss_dssp CCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEE
T ss_pred CcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEE
Confidence 23332222 567789999999999988654332 244556655554433
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=5e-23 Score=254.68 Aligned_cols=314 Identities=9% Similarity=0.062 Sum_probs=225.2
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCC---CeEEEEEcCCCCEEEEEeCC---
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLGVAYSK--- 409 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~---~V~~v~fspdg~~las~~~d--- 409 (1084)
.+.+++|||||+++++ ..| ++|++||+.++.... ++.+|.. .|.+++|||||++||+++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~d---------g~i~~~d~~~g~~~~---~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~ 84 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQK---------GTVRLWNVETNTSTV---LIEGKKIESLRAIRYEISPDREYALFSYNVEPI 84 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSS---------SCEEEBCGGGCCCEE---EECTTTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred cccccEEcCCCcEEEE-eCC---------CCEEEEECCCCcEEE---EeccccccccccceEEECCCCCEEEEEecCccc
Confidence 5778999999998876 445 899999998876542 2455554 49999999999999999764
Q ss_pred ------CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE---
Q 001403 410 ------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV--- 480 (1084)
Q Consensus 410 ------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v--- 480 (1084)
+.+.+||+.+++. +.+....+|...+..++|||||+ .|+.++. +.|++||+.+++.......+...+
T Consensus 85 ~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~ 160 (723)
T 1xfd_A 85 YQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYN 160 (723)
T ss_dssp SSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred eeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecCCCCCceEC
Confidence 7889999999875 22223345556689999999999 5777764 799999999988776665544333
Q ss_pred ---------------EEEeecccCCCcEEEEEecCC----------------------------------eEEEEECCCC
Q 001403 481 ---------------YSLCPHAKENIHFIFSISVDG----------------------------------KIKAWLYDSL 511 (1084)
Q Consensus 481 ---------------~~~~~~~~~~~~~l~s~s~dg----------------------------------~i~iwd~~~~ 511 (1084)
.+++| ++||+.|++++.|+ .|++||+.++
T Consensus 161 g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~ 238 (723)
T 1xfd_A 161 GLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP 238 (723)
T ss_dssp EECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred cccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC
Confidence 67888 45778898887653 7999999887
Q ss_pred CceEeecCC------CCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCce----EEEEEcCC
Q 001403 512 GARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV----SVVHFDTA 581 (1084)
Q Consensus 512 ~~~~~~~~~------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v----~~~~~s~~ 581 (1084)
+....+..+ ...+..++|+|||+++++.......+..|++||+.+++....+..+. ...+ ..++|+||
T Consensus 239 ~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~~~~~spd 316 (723)
T 1xfd_A 239 THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQNEEPVFSKD 316 (723)
T ss_dssp CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCCCCCEECTT
T ss_pred ceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc--CCEEeccCCCceEcCC
Confidence 755555543 55789999999999988776544456789999999998877665432 1223 37899999
Q ss_pred CCEEEE--EECCC------cEEEEE-CCCCeE--EEEEcCCCCCCCcce-EEEecCCCEEEEEECC---CeEEEEEcCCC
Q 001403 582 KDQILA--AGDDH------VIKIWD-MNKVQL--LTTIDAGGGLPENPR-ICFNKNGTLLAVIANE---NRIKILETPES 646 (1084)
Q Consensus 582 ~~~l~~--~~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~s~~~~~l~~~~~d---g~i~iwd~~~~ 646 (1084)
|+.|+. +..++ .|++|| ..++.. ...+... . ..+.. ++|+|||+.|+..+.+ +.+++|++...
T Consensus 317 g~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 317 GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-D-WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp SCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-S-SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred CCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-C-eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 997775 44666 577777 444441 3333321 1 12333 6899999999877665 78999998643
Q ss_pred C--eeeeccc---cccceeEEEEcCCCceee
Q 001403 647 N--SVDAAGV---LSDNLRKLSVNPISTVTG 672 (1084)
Q Consensus 647 ~--~~~~~~~---~~~~i~~~~~~p~~~~~~ 672 (1084)
. ....+.. +...+..++++|++..++
T Consensus 395 ~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~ 425 (723)
T 1xfd_A 395 GNFNRQCLSCDLVENCTYFSASFSHSMDFFL 425 (723)
T ss_dssp TTCCCBCSSTTSSSSCCCCEEEECTTSSEEE
T ss_pred CCCCcceecccccCCCCeEEEEECCCCCEEE
Confidence 2 2333333 455677788887665543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-21 Score=239.17 Aligned_cols=239 Identities=9% Similarity=-0.002 Sum_probs=167.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccc-cceeeeeccc-----------------ccEeEEEeecCCCcEEEE
Q 001403 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHV-----------------GNVNDLAFSAPCKQISVI 451 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~-~~~~~l~~h~-----------------~~V~~l~~s~d~~~l~l~ 451 (1084)
.+..+.|+ |+.+++++.++ | +||+.+++.+ . .+..|. ..|.+++|||| + .++
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~ 96 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQT---TRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVV 96 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC-------C---EEEEHHHHHTTC-----------CCCEEEEETTT-T--EEE
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeE---EeechhHhhhhccchhccccccccCceeEEECCC-C--eEE
Confidence 34557888 67788888888 8 9999999763 3 233333 46999999999 5 344
Q ss_pred EEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCC-----CCceEeecCCCCe---
Q 001403 452 TCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARVDYDAPGLG--- 523 (1084)
Q Consensus 452 s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~~--- 523 (1084)
.+. ++.|++||+.+++... +..+...+.+++|+| ||+.|+++ .++.|++|++.+ ++...........
T Consensus 97 ~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 97 LFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp EEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred EEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 343 6999999999887644 445677788888854 77888884 789999999988 6655443333332
Q ss_pred -----------EEEEEEcCCCCEEEEEeeCC-----------------------------CCCeeEEEecCCCceEeeee
Q 001403 524 -----------CTRMAYSANGRRLFSCGTSK-----------------------------EGESFLVEWNESEGAIKRTY 563 (1084)
Q Consensus 524 -----------i~~~~~s~d~~~l~~~~~~~-----------------------------~~~~~i~~wd~~~~~~~~~~ 563 (1084)
+.+++|+|||++|++++.+. ..+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 47899999999999987321 13578999999998876554
Q ss_pred eccccccCceEEEEEcCCCCEEEEEECCC-----cEEEEECCCCeEEEEEc-CCC--CCCCcceEEEec--CCCEEEEEE
Q 001403 564 QGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTID-AGG--GLPENPRICFNK--NGTLLAVIA 633 (1084)
Q Consensus 564 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~-~~~--~~~~v~~v~~s~--~~~~l~~~~ 633 (1084)
.... +...+..++|+|||+.|++++.++ .|++||+.+++....+. ... ....+..++|+| ||++++++.
T Consensus 252 ~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~ 330 (706)
T 2z3z_A 252 TGEP-KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSR 330 (706)
T ss_dssp CCSC-TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEEC
T ss_pred cCCC-CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEc
Confidence 3211 226789999999999999987765 89999999984333332 111 111246789999 999888888
Q ss_pred CCCeEEEEEcC
Q 001403 634 NENRIKILETP 644 (1084)
Q Consensus 634 ~dg~i~iwd~~ 644 (1084)
.++.+++|.+.
T Consensus 331 ~~g~~~l~~~~ 341 (706)
T 2z3z_A 331 RDGWNHLYLYD 341 (706)
T ss_dssp TTSSCEEEEEE
T ss_pred cCCccEEEEEE
Confidence 88888887654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-21 Score=238.72 Aligned_cols=324 Identities=9% Similarity=0.076 Sum_probs=221.3
Q ss_pred EeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee-eEeccCC-----------------CcEEEEeecccCCCcEEEEE
Q 001403 436 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHG-----------------APVYSLCPHAKENIHFIFSI 497 (1084)
Q Consensus 436 V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~-~~~~~h~-----------------~~v~~~~~~~~~~~~~l~s~ 497 (1084)
+..+.|+ |+ .+++++.|+ | +||+.+|+.+ ..+..|. ..|.+++|++ |+ .++.+
T Consensus 28 ~~~~~w~--g~--~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~sp--d~-~~~~~ 98 (706)
T 2z3z_A 28 VVGLQWM--GD--NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAG--RG-LVVLF 98 (706)
T ss_dssp CTTCEEE--TT--EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETT--TT-EEEEE
T ss_pred CCCCcCc--CC--eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECC--CC-eEEEE
Confidence 4557888 55 466666677 8 9999999873 4443333 4689999966 43 44444
Q ss_pred ecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-----ceEeeeeecccc----
Q 001403 498 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-----GAIKRTYQGLQL---- 568 (1084)
Q Consensus 498 s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~-----~~~~~~~~~~~~---- 568 (1084)
.++.|++||+.+++.. .+..+...+..++|+|||++|+++. ++.|++||+.+ ++.......+..
T Consensus 99 -~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 99 -TQGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYVR-----NHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp -ETTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEEE-----TTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred -ECCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEEE-----CCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 4599999999876543 3344455678899999999999864 56799999998 776655444330
Q ss_pred -------ccCceEEEEEcCCCCEEEEEE---------------------------------CCCcEEEEECCCCeEEEEE
Q 001403 569 -------QHNSVSVVHFDTAKDQILAAG---------------------------------DDHVIKIWDMNKVQLLTTI 608 (1084)
Q Consensus 569 -------~~~~v~~~~~s~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~ 608 (1084)
+...+.+++|+|||++|++++ .+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 001147899999999999987 4578999999998876554
Q ss_pred cCCCCCCCcceEEEecCCCEEEEEECCC-----eEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEec
Q 001403 609 DAGGGLPENPRICFNKNGTLLAVIANEN-----RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 683 (1084)
Q Consensus 609 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~ 683 (1084)
....+...+..++|+|||+.|++++.++ .|++||..+++....+.
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~------------------------------ 301 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLF------------------------------ 301 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEE------------------------------
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEE------------------------------
Confidence 3323333578999999999999887665 78888876552211110
Q ss_pred CCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcC
Q 001403 684 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 763 (1084)
Q Consensus 684 ~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~ 763 (1084)
.....
T Consensus 302 -----------------------------------------------------------~~~~~---------------- 306 (706)
T 2z3z_A 302 -----------------------------------------------------------VETDK---------------- 306 (706)
T ss_dssp -----------------------------------------------------------EEECS----------------
T ss_pred -----------------------------------------------------------EccCC----------------
Confidence 00000
Q ss_pred cccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC--CCCEEEEEe-CCeEEEEEcC-CceeEEEEcCCCCCeE
Q 001403 764 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK--NDAYLFSAS-GGVISLYIVM-TFKTILTIMPPSPTAT 839 (1084)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--dg~~l~~~s-dg~i~vwd~~-~~~~~~~~~~~~~~i~ 839 (1084)
.....+.+++|+| ||+++++++ ++.+++|++. +++.+..+..+...+.
T Consensus 307 ----------------------------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~ 358 (706)
T 2z3z_A 307 ----------------------------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVT 358 (706)
T ss_dssp ----------------------------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEE
T ss_pred ----------------------------CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEE
Confidence 0111234567888 888777776 5777788776 6677777777777787
Q ss_pred E-EEEcCCCCcEEEEE-eCCC----eEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCC----CcEEEEeCCC
Q 001403 840 S-LAFNPHDNNVIAIG-MDDS----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----AQIFVWDVDG 909 (1084)
Q Consensus 840 ~-l~~s~~d~~~la~g-~~dg----~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~d----g~I~iwd~~~ 909 (1084)
. ++|+| +++.|+.+ ..++ .|+.||+.+++ ...+. |...+.+++|||||++++..+.+ +.|++||+.+
T Consensus 359 ~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 359 NFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp EEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred eeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 6 89999 77666554 4444 67777877765 34444 67789999999999999876544 5699999988
Q ss_pred Cc
Q 001403 910 WG 911 (1084)
Q Consensus 910 ~~ 911 (1084)
++
T Consensus 436 ~~ 437 (706)
T 2z3z_A 436 GS 437 (706)
T ss_dssp CE
T ss_pred Ce
Confidence 65
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-20 Score=207.30 Aligned_cols=279 Identities=10% Similarity=0.050 Sum_probs=200.6
Q ss_pred EEEcCCCcee-eeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeC-CCEEEEEEc
Q 001403 340 MDFHPVQHTL-LLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KHIVQLYAY 417 (1084)
Q Consensus 340 v~~spdg~~l-as~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~-dg~v~iwd~ 417 (1084)
..|++++.++ ++...+ +.|.+||..++...... ..+...+ +++|+|||+++++++. ++.|.+||+
T Consensus 3 ~~~~~~~~~~~v~~~~~---------~~v~~~d~~~~~~~~~~---~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~ 69 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHL---------RRISFFSTDTLEILNQI---TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIET 69 (331)
T ss_dssp ----CCCCEEEEEEGGG---------TEEEEEETTTCCEEEEE---ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEEC
T ss_pred eeEcCCCCEEEEEecCC---------CeEEEEeCcccceeeeE---EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEEC
Confidence 4566766664 444444 89999999887664432 2345566 9999999997777765 889999999
Q ss_pred cCCcc-ccceeeeecccccEeEEEeecCCCcEEEEEEeCC-C--cEEEEECCCCceeeEeccCCCcEEEEeecccCCCcE
Q 001403 418 HGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-K--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 493 (1084)
Q Consensus 418 ~~~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d-~--~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~ 493 (1084)
.+++. .. .+..+..+..+++|+|||+ +++++..+ + .|.+||+.+++.+..+..+ ....+++|+| +|++
T Consensus 70 ~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~sp--dg~~ 141 (331)
T 3u4y_A 70 QLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISP--NGNG 141 (331)
T ss_dssp SSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECT--TSSC
T ss_pred CCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECC--CCCE
Confidence 99875 33 4555666665599999999 56655544 3 8999999999988887654 4468899955 6654
Q ss_pred E-EEEecCCe-EEEEECCCCCceE----eecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE---eeeee
Q 001403 494 I-FSISVDGK-IKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQ 564 (1084)
Q Consensus 494 l-~s~s~dg~-i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~ 564 (1084)
+ ++...++. |.+|+++...... ...........++|+|||++++++.. .++.|.+||+.+++. +..+.
T Consensus 142 l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~~~~~~~ 218 (331)
T 3u4y_A 142 LILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENITLLNAVG 218 (331)
T ss_dssp EEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCEEEEEEE
T ss_pred EEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccceeeecc
Confidence 4 45556688 9999998655432 22233456789999999998777653 366799999999887 66665
Q ss_pred ccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeE--EEEEcCC----CC-CCCcceEEEecCCCEEEEEEC-C
Q 001403 565 GLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL--LTTIDAG----GG-LPENPRICFNKNGTLLAVIAN-E 635 (1084)
Q Consensus 565 ~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~----~~-~~~v~~v~~s~~~~~l~~~~~-d 635 (1084)
.. ..+..++|+|+++++++++ .++.|.+||..+++. +..+... .. ......++|+|||++|++++. +
T Consensus 219 ~~----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 294 (331)
T 3u4y_A 219 TN----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS 294 (331)
T ss_dssp CS----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT
T ss_pred CC----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC
Confidence 43 4678899999999877655 578899999999887 4444322 11 111245899999998876665 5
Q ss_pred CeEEEEEcCCC
Q 001403 636 NRIKILETPES 646 (1084)
Q Consensus 636 g~i~iwd~~~~ 646 (1084)
+.|.+||+...
T Consensus 295 ~~v~v~d~~~~ 305 (331)
T 3u4y_A 295 RELKVFTISGK 305 (331)
T ss_dssp TEEEEEETTSC
T ss_pred CcEEEEEecCC
Confidence 69999999865
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-20 Score=210.66 Aligned_cols=280 Identities=10% Similarity=0.059 Sum_probs=214.5
Q ss_pred CCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE-eCCCEEE
Q 001403 335 SSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQ 413 (1084)
Q Consensus 335 ~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~-~~dg~v~ 413 (1084)
..+..++|||||++++++..+-..+ ..++.|.+||..+........ ....+..++|+|||++++++ ..++.|.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~--~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKL--DKGGVVYRLDPVTLEVTQAIH----NDLKPFGATINNTTQTLWFGNTVNSAVT 114 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTT--EESEEEEEECTTTCCEEEEEE----ESSCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCC--CCCccEEEEcCCCCeEEEEEe----cCCCcceEEECCCCCEEEEEecCCCEEE
Confidence 4788999999999998865431100 113799999998876544332 23457889999999966655 5578999
Q ss_pred EEEccCCccccceeeeecccc---------cEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEe
Q 001403 414 LYAYHGGSDARQQLEIDAHVG---------NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 484 (1084)
Q Consensus 414 iwd~~~~~~~~~~~~l~~h~~---------~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~ 484 (1084)
+||..+++.+. .+..+.. .+.+++|+|+|+.+++...+.++.|.+||..+++.+..+..+...+..++
T Consensus 115 ~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 191 (353)
T 3vgz_A 115 AIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLA 191 (353)
T ss_dssp EEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCE
T ss_pred EEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEE
Confidence 99999987655 3333322 27889999999952222224588999999999999988876666678888
Q ss_pred ecccCCCcEEEEEecCCeEEEEECCCCCceEeecC----CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 485 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
|+ ++++++++++.++.|.+||..+.+....+.. +...+..++|+|+|++++++.. +++.|.+||..+++.+
T Consensus 192 ~s--~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~v~~~d~~~~~~~ 266 (353)
T 3vgz_A 192 LD--SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS---KAAEVLVVDTRNGNIL 266 (353)
T ss_dssp EE--TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES---SSSEEEEEETTTCCEE
T ss_pred EC--CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC---CCCEEEEEECCCCcEE
Confidence 85 4778999999999999999998877665554 3446788999999998887753 2577999999999988
Q ss_pred eeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCC
Q 001403 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 636 (1084)
Q Consensus 561 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 636 (1084)
..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+.... .+..++|+|+|++++++..++
T Consensus 267 ~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 267 AKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECTTSCEEEEEEECC
T ss_pred EEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcCCCCEEEEEEccc
Confidence 8877543 25689999999777665 68999999999999998887543 368999999999887776653
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-20 Score=207.31 Aligned_cols=206 Identities=9% Similarity=0.148 Sum_probs=144.9
Q ss_pred CccEEEecCCCCEEEEEe--CCeEEEEEc---CCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEEcCC-c
Q 001403 796 AVPCFALSKNDAYLFSAS--GGVISLYIV---MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-S 868 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~s--dg~i~vwd~---~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~i~iwd~~~-~ 868 (1084)
.+..++|+|+|+++++++ ++.|.+||+ .+++....+..+ ..+.+++|+| ++++|++++ .++.|++||+.+ +
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP-DNRTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC-CCCEEEEecCCCCEEEEEEecCCC
Confidence 456788888888776665 578999998 444555555533 4588999999 788777776 899999999987 6
Q ss_pred eeee----eecc-cccCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC--CceeeeeeeecCCCCccCCCCceEEEEccCC
Q 001403 869 EVIS----KLEG-HSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 940 (1084)
Q Consensus 869 ~~~~----~l~~-h~~~V~~l~~spd~~~l~s~s-~dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 940 (1084)
+... .+.. ....+.+++|+|++++|+.++ .++.|.+|++.. ++......+............+..++|+|||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence 5432 2222 334788999999999776555 789999999954 4433222333222211111256789999999
Q ss_pred CEEEEE--eCCeEEEEEcC--Cc--ceeeEeecCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEc--CCCcee
Q 001403 941 TRFLLV--HETHLAIYEAE--EL--TCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEA--SNLEVQ 1005 (1084)
Q Consensus 941 ~~la~~--~d~~i~vwd~~--~~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~dg~i~vwd~--~~~~~~ 1005 (1084)
++|+++ .++.|.+||+. ++ +.+..+. .+. .+.+++|+|||++|++++ .++.|.+|++ .++++.
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~ 314 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQP-TET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH 314 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-CSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeeeec-CCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceee
Confidence 988864 57899999998 33 3333322 233 388999999999998888 5799999955 466543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-20 Score=207.12 Aligned_cols=279 Identities=13% Similarity=0.092 Sum_probs=205.0
Q ss_pred CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEE-ECCCeEEEEEcCCCCeeeeccccccceeE
Q 001403 583 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRK 661 (1084)
Q Consensus 583 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 661 (1084)
+++++++.++.|++||..+++.+..+........+..++|+|+|+.++++ ..++.|.+||+.+++.+..+.....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~---- 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---- 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT----
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc----
Confidence 47888999999999999999999888754411126789999999876554 4578999999887654432210000
Q ss_pred EEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeE
Q 001403 662 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 741 (1084)
Q Consensus 662 ~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 741 (1084)
.
T Consensus 78 -----------------------------------------------------------------~-------------- 78 (337)
T 1pby_B 78 -----------------------------------------------------------------E-------------- 78 (337)
T ss_dssp -----------------------------------------------------------------T--------------
T ss_pred -----------------------------------------------------------------c--------------
Confidence 0
Q ss_pred EEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEE---------
Q 001403 742 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--------- 812 (1084)
Q Consensus 742 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~--------- 812 (1084)
.+...+.+++|+|||++++++
T Consensus 79 --------------------------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 108 (337)
T 1pby_B 79 --------------------------------------------------ERVKSLFGAALSPDGKTLAIYESPVRLELT 108 (337)
T ss_dssp --------------------------------------------------EEEECTTCEEECTTSSEEEEEEEEEEECSS
T ss_pred --------------------------------------------------cccccccceEECCCCCEEEEEecccccccc
Confidence 001123345566666555555
Q ss_pred ----eCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcC
Q 001403 813 ----SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 888 (1084)
Q Consensus 813 ----sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~sp 888 (1084)
.++.|.+||+.+++....+.. ...+.+++|+| ++++|+++ ++.|++||+.+++.+..+..+... ..+.|+|
T Consensus 109 ~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~ 183 (337)
T 1pby_B 109 HFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQP 183 (337)
T ss_dssp CEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCC
T ss_pred cccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCC
Confidence 358899999999988887764 45678899999 88878777 688999999999988777654311 1237899
Q ss_pred CCCEEEEEeCCC------------------------cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEE
Q 001403 889 ALNILVSSGGDA------------------------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 944 (1084)
Q Consensus 889 d~~~l~s~s~dg------------------------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 944 (1084)
|++.|+..+.++ .|.+||+.+++... ..+.. +. ..+..++|+|||++++
T Consensus 184 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~---~~---~~~~~~~~s~dg~~l~ 256 (337)
T 1pby_B 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM-REVRI---MD---VFYFSTAVNPAKTRAF 256 (337)
T ss_dssp BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE-EEEEE---CS---SCEEEEEECTTSSEEE
T ss_pred CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE-eecCC---CC---CceeeEEECCCCCEEE
Confidence 998776554332 46899999977542 11211 11 2577899999999999
Q ss_pred EEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 945 LVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 945 ~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
++ ++.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.++.|++||+.+++.+..+.
T Consensus 257 ~~-~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 257 GA-YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EE-ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred Ee-CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 88 79999999999988776543 3467899999999999999999999999999999887776
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-20 Score=205.40 Aligned_cols=265 Identities=14% Similarity=0.153 Sum_probs=186.1
Q ss_pred ceEEEEEcCC-ccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC-CEEEEEEcc--CCccccceeeeecccccEeEEE
Q 001403 365 RNFKVWDIGA-CSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYH--GGSDARQQLEIDAHVGNVNDLA 440 (1084)
Q Consensus 365 ~~v~iwd~~~-~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d-g~v~iwd~~--~~~~~~~~~~l~~h~~~V~~l~ 440 (1084)
+.|++||+.. +...... ...|...+.+++|+|||++|++++.+ +.|.+|++. +++. .....+..+. .+.+++
T Consensus 15 ~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~ 90 (343)
T 1ri6_A 15 QQIHVWNLNHEGALTLTQ--VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-TFAAESALPG-SLTHIS 90 (343)
T ss_dssp TEEEEEEECTTSCEEEEE--EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-EEEEEEECSS-CCSEEE
T ss_pred CeEEEEEECCCCcEEEee--eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-eeccccccCC-CCcEEE
Confidence 9999999963 2211111 22367789999999999999999876 899999998 5542 2222344333 789999
Q ss_pred eecCCCcEEEEEE-eCCCcEEEEECC---CCceeeEeccCCCcEEEEeecccCCCcEEEEEe-cCCeEEEEECCC-CCce
Q 001403 441 FSAPCKQISVITC-GDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDS-LGAR 514 (1084)
Q Consensus 441 ~s~d~~~l~l~s~-~~d~~i~vwd~~---~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~-~~~~ 514 (1084)
|+|+++ +++++ ..++.|.+||+. +++.+..+..+ ..+.+++|++ +++++++++ .++.|.+||+.. +...
T Consensus 91 ~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 91 TDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP--DNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp ECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT--TSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred EcCCCC--EEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC--CCCEEEEecCCCCEEEEEEecCCCcee
Confidence 999999 55544 458899999994 44455555544 3577888854 667777777 899999999987 4332
Q ss_pred E----eec-CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC--ceE--eeeeeccc---cccCceEEEEEcCCC
Q 001403 515 V----DYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GAI--KRTYQGLQ---LQHNSVSVVHFDTAK 582 (1084)
Q Consensus 515 ~----~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~--~~~--~~~~~~~~---~~~~~v~~~~~s~~~ 582 (1084)
. ... .....+..++|+|+|+++++++. .++.|.+|++.. ++. ........ .....+..++|+|++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred eecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence 1 222 23447888999999998877652 266799999853 433 22222111 012356789999999
Q ss_pred CEEEEEE-CCCcEEEEECC--C--CeEEEEEcCCCCCCCcceEEEecCCCEEEEEE-CCCeEEEEEcC
Q 001403 583 DQILAAG-DDHVIKIWDMN--K--VQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETP 644 (1084)
Q Consensus 583 ~~l~~~~-~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~ 644 (1084)
++++++. .++.|.+||+. + .+.+..+..... +..++|+|+|++|++++ .++.+.+|++.
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ---PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS---CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc---cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 9888654 78999999998 3 344445544332 68899999999988888 57999999554
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-19 Score=201.23 Aligned_cols=197 Identities=10% Similarity=0.015 Sum_probs=143.6
Q ss_pred EEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEec-CCeEEEEECCCCCc-eEe
Q 001403 439 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGA-RVD 516 (1084)
Q Consensus 439 l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~-~~~ 516 (1084)
..|.+++.. ++++++.++.|.+||+.+++.+..+..+...+ .++|++ +++++++++. ++.|.+||+.+++. ...
T Consensus 3 ~~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 3 AMFQTTSNF-GIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITS--DCSNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp ----CCCCE-EEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECS--SSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred eeEcCCCCE-EEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcC--CCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 356666664 67888889999999999999988887766667 888854 6676666555 89999999998887 555
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEE-ECCCc-E
Q 001403 517 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHV-I 594 (1084)
Q Consensus 517 ~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~-i 594 (1084)
+..+..+..+++|+|+|+++++... ..+...|.+||+.+++.+..+.... ....++|+|++++++++ ..++. |
T Consensus 79 ~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~----~~~~~~~spdg~~l~~~~~~~~~~i 153 (331)
T 3u4y_A 79 IQEGQSSMADVDITPDDQFAVTVTG-LNHPFNMQSYSFLKNKFISTIPIPY----DAVGIAISPNGNGLILIDRSSANTV 153 (331)
T ss_dssp EEECSSCCCCEEECTTSSEEEECCC-SSSSCEEEEEETTTTEEEEEEECCT----TEEEEEECTTSSCEEEEEETTTTEE
T ss_pred cccCCCCccceEECCCCCEEEEecC-CCCcccEEEEECCCCCeEEEEECCC----CccceEECCCCCEEEEEecCCCceE
Confidence 6555555555999999999994332 2122389999999999888776544 56899999999866654 56688 9
Q ss_pred EEEECCCCeEE-----EEEcCCCCCCCcceEEEecCCCEEEEEE-CCCeEEEEEcCCCC
Q 001403 595 KIWDMNKVQLL-----TTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESN 647 (1084)
Q Consensus 595 ~iwd~~~~~~~-----~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~ 647 (1084)
.+|++.....+ ..+.. ......++|+|+|++++++. .++.|.+||+.+++
T Consensus 154 ~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 209 (331)
T 3u4y_A 154 RRFKIDADGVLFDTGQEFISG---GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE 209 (331)
T ss_dssp EEEEECTTCCEEEEEEEEECS---SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred EEEEECCCCcEeecCCccccC---CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 99998754332 22221 12367899999998665555 57889999977653
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-19 Score=202.02 Aligned_cols=248 Identities=13% Similarity=0.116 Sum_probs=195.0
Q ss_pred CCeEEEEEcCCCCEEEEEeC-------CCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEE
Q 001403 389 VSVNRVVWSPDGSLLGVAYS-------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 461 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~-------dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~v 461 (1084)
..+..++|+|||+++++++. ++.|.+||..+++.+.. +. ....+..++|+|+|+. ++++...++.|.+
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~-~~~~~~~~~~s~dg~~-l~v~~~~~~~v~~ 115 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA---IH-NDLKPFGATINNTTQT-LWFGNTVNSAVTA 115 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE---EE-ESSCCCSEEEETTTTE-EEEEETTTTEEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE---Ee-cCCCcceEEECCCCCE-EEEEecCCCEEEE
Confidence 56889999999999988874 56899999999876553 32 2345788999999995 4555666899999
Q ss_pred EECCCCceeeEeccCCCc---------EEEEeecccCCCcEEEEEe--cCCeEEEEECCCCCceEeecCCCCeEEEEEEc
Q 001403 462 WDAVTGSRTYSFEGHGAP---------VYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS 530 (1084)
Q Consensus 462 wd~~~g~~~~~~~~h~~~---------v~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s 530 (1084)
||..+++.+..+..+... +.+++|++ +++.+++++ .++.|.+||..+.+....+......+..++|+
T Consensus 116 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s 193 (353)
T 3vgz_A 116 IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD 193 (353)
T ss_dssp EETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred EeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence 999999998888765432 67888855 566666665 47899999999888777776556567889999
Q ss_pred CCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccc-ccCceEEEEEcCCCCEEEEEEC-CCcEEEEECCCCeEEEEE
Q 001403 531 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTI 608 (1084)
Q Consensus 531 ~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~ 608 (1084)
|+|++++++.. ++.|.+||..+++....+..... +...+..++|+|+++++++++. ++.|.+||..+++.+..+
T Consensus 194 ~dg~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 269 (353)
T 3vgz_A 194 SEGKRLYTTNA----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269 (353)
T ss_dssp TTTTEEEEECT----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEcC----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99999998864 56799999999998887765221 2256788999999998877665 599999999999998888
Q ss_pred cCCCCCCCcceEEEecCCCEEEEEE-CCCeEEEEEcCCCCeeee
Q 001403 609 DAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDA 651 (1084)
Q Consensus 609 ~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~ 651 (1084)
..... ..++|+|++++++++. .++.|.+||..+++.+..
T Consensus 270 ~~~~~----~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~ 309 (353)
T 3vgz_A 270 AAPES----LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT 309 (353)
T ss_dssp ECSSC----CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EcCCC----ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence 75432 5799999999776666 689999999988755543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-20 Score=203.50 Aligned_cols=280 Identities=11% Similarity=0.060 Sum_probs=205.1
Q ss_pred ceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCC-CeEEEEEcCCCCEEEE-EeCCCEEEEEEccCCcccc
Q 001403 347 HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-SVNRVVWSPDGSLLGV-AYSKHIVQLYAYHGGSDAR 424 (1084)
Q Consensus 347 ~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~-~V~~v~fspdg~~las-~~~dg~v~iwd~~~~~~~~ 424 (1084)
++|+++..| +.|.+||..++...... ..++.. .+..++|+|||+++++ +..++.|.+||+.+++.+.
T Consensus 2 ~~~v~~~~~---------~~v~~~d~~~~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~ 70 (337)
T 1pby_B 2 DYILAPARP---------DKLVVIDTEKMAVDKVI--TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG 70 (337)
T ss_dssp EEEEEEETT---------TEEEEEETTTTEEEEEE--ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred cEEEEcCCC---------CeEEEEECCCCcEEEEE--EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEe
Confidence 467777666 99999999887654332 122222 4888999999987655 4567899999999987654
Q ss_pred ceeeeec---ccccEeEEEeecCCCcEEEEEEe------------CCCcEEEEECCCCceeeEeccCCCcEEEEeecccC
Q 001403 425 QQLEIDA---HVGNVNDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 489 (1084)
Q Consensus 425 ~~~~l~~---h~~~V~~l~~s~d~~~l~l~s~~------------~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~ 489 (1084)
.+ .... |...+.+++|+|||+ .+++++ .++.|.+||+.+++.+..+.. ...+.+++|+ +
T Consensus 71 ~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s--~ 144 (337)
T 1pby_B 71 RI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWA--R 144 (337)
T ss_dssp EE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEEC--T
T ss_pred eE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEEC--C
Confidence 22 1111 233678899999999 555554 579999999999988877764 4456778884 4
Q ss_pred CCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCC---------------------ee
Q 001403 490 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE---------------------SF 548 (1084)
Q Consensus 490 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~---------------------~~ 548 (1084)
++++++++ ++.|.+||+.+++....+..... ...+.|+|||+.++..+... +. ..
T Consensus 145 dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (337)
T 1pby_B 145 DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESS-GVMATPFYTARKDIDPADPTAYRTG 220 (337)
T ss_dssp TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTT-TEEEEEEEEEBTTSCTTSGGGEEEE
T ss_pred CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCC-Cceeeeeeccccccccccccccccc
Confidence 66777777 68999999998776655544331 01237899998776554211 01 14
Q ss_pred EEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCE
Q 001403 549 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 628 (1084)
Q Consensus 549 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 628 (1084)
|.+||+.+++.. .+.... +...+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++|+|+|++
T Consensus 221 v~~~d~~~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~ 293 (337)
T 1pby_B 221 LLTMDLETGEMA-MREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNVSTDGST 293 (337)
T ss_dssp EEEEETTTCCEE-EEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEECTTSCE
T ss_pred eEEEeCCCCCce-EeecCC-CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEEECCCCCE
Confidence 789999998875 322211 12567889999999999988 7999999999999988887543 3689999999999
Q ss_pred EEEEECCCeEEEEEcCCCCeeeeccc
Q 001403 629 LAVIANENRIKILETPESNSVDAAGV 654 (1084)
Q Consensus 629 l~~~~~dg~i~iwd~~~~~~~~~~~~ 654 (1084)
+++++.++.|.+||+.+++.+..+..
T Consensus 294 l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 294 VWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 99998899999999999887766653
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.2e-21 Score=233.88 Aligned_cols=378 Identities=12% Similarity=0.027 Sum_probs=243.8
Q ss_pred EEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEEC---------CCcEEE
Q 001403 526 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------DHVIKI 596 (1084)
Q Consensus 526 ~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~i 596 (1084)
.++|+|||++++.. . ++.|++||+.+++....+.++......+.+++|||||++|++++. ++.|++
T Consensus 20 ~~~~s~dg~~~~~~-~----d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQS-A----DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEEC-T----TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEEc-C----CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 67899999665543 2 557999999999988777765411124889999999999999876 789999
Q ss_pred EECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeecc
Q 001403 597 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 676 (1084)
Q Consensus 597 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~ 676 (1084)
||+.+++.+...... ..+..++|||||+.|+.+. ++.|++|++.+++..........
T Consensus 95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~------------------- 151 (719)
T 1z68_A 95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE------------------- 151 (719)
T ss_dssp EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT-------------------
T ss_pred EECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc-------------------
Confidence 999998863111111 2478899999999999986 68999999987755432210000
Q ss_pred CceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecC-CceEEeec
Q 001403 677 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRW 755 (1084)
Q Consensus 677 ~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~vw~~ 755 (1084)
..+..|.. . .++.-+ -.....+++|||||+.|+.++.+ +.+.+|.+
T Consensus 152 --------------~~v~~g~~-~--~v~~ee----------------~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~ 198 (719)
T 1z68_A 152 --------------NKIFNGIP-D--WVYEEE----------------MLATKYALWWSPNGKFLAYAEFNDTDIPVIAY 198 (719)
T ss_dssp --------------TTEEESSC-C--HHHHHH----------------TTCSSCCEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred --------------CCeEcccc-c--ceeeee----------------cccCcccEEECCCCCEEEEEEECCCCCceEEe
Confidence 00000000 0 000000 00122468999999999988765 55555543
Q ss_pred cCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeE--EE---
Q 001403 756 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI--LT--- 830 (1084)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~--~~--- 830 (1084)
..... .+...+..+.+...|.. .....|++||+.+++.. ..
T Consensus 199 ~~~~~-------------------------------~~~~~~~~~~yp~~g~~---~~~~~l~~~d~~~~~~~~~~~~~~ 244 (719)
T 1z68_A 199 SYYGD-------------------------------EQYPRTINIPYPKAGAK---NPVVRIFIIDTTYPAYVGPQEVPV 244 (719)
T ss_dssp EECCS-------------------------------SSSCEEEEEECCBTTSC---CCEEEEEEEESSCHHHHCCEECCC
T ss_pred eccCC-------------------------------CCCccceeecCCCCCCC---CCeeEEEEEECCCCCccceeEccC
Confidence 22100 02223444555444431 11347999999988753 12
Q ss_pred ---EcCCCCCeEEEEEcCCCCcEEEEEeCC----CeEEEEE----cCCceeeeee----cccccCEE-----EEEEcCCC
Q 001403 831 ---IMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYN----ARSSEVISKL----EGHSKRVT-----GLVFSDAL 890 (1084)
Q Consensus 831 ---~~~~~~~i~~l~~s~~d~~~la~g~~d----g~i~iwd----~~~~~~~~~l----~~h~~~V~-----~l~~spd~ 890 (1084)
+.++...+..++||| |++++++.... ..|.+|| ..+++....+ .+|.+.+. .++|+|||
T Consensus 245 ~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 323 (719)
T 1z68_A 245 PAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA 323 (719)
T ss_dssp CHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence 335777899999999 68887775433 2588999 8888877666 46777776 88999999
Q ss_pred CEEEE--EeCCC--cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeC-----CeEEEEEcCC--
Q 001403 891 NILVS--SGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----THLAIYEAEE-- 958 (1084)
Q Consensus 891 ~~l~s--~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d-----~~i~vwd~~~-- 958 (1084)
+.|+. +..+| .|.+||+.+++.. .+. .+. ..+..+.++ +++.|+. +.+ +..++|.+..
T Consensus 324 ~~l~~~~~~~~g~~~l~~~~~~~~~~~---~lt---~~~---~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~ 393 (719)
T 1z68_A 324 ISYYKIFSDKDGYKHIHYIKDTVENAI---QIT---SGK---WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGS 393 (719)
T ss_dssp SCEEEEEECTTSCEEEEEESSCSTTCE---ECS---CSS---SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSS
T ss_pred CeEEEEEEccCCceEEEEEECCCCceE---ecc---cCc---eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCC
Confidence 96654 44555 5777787775521 121 111 146777778 8888777 443 6788887753
Q ss_pred cce-eeEee---cCCCCCEEEEEEccCCCEEEEE-eCC--CcEEEEEcCCCceeEEec
Q 001403 959 LTC-LKQWF---PISSVPISQATFSCDCRMVFTS-FVD--GTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 959 ~~~-~~~~~---~~h~~~v~~l~fs~dg~~l~t~-~~d--g~i~vwd~~~~~~~~~~~ 1009 (1084)
+.. ...+. .+|...+..+.|||||++++.. +.+ ..+.+||+.+++....+.
T Consensus 394 g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 394 YPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp SSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred CCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 421 12221 1256678899999999887754 333 468899999887654443
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-20 Score=200.54 Aligned_cols=253 Identities=15% Similarity=0.120 Sum_probs=185.0
Q ss_pred cceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccC-Cccccceeeeecc-cccEeEEEe
Q 001403 364 IRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAH-VGNVNDLAF 441 (1084)
Q Consensus 364 ~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~-~~~~~~~~~l~~h-~~~V~~l~~ 441 (1084)
+++|++||+.++.... +..|...|.+++|+|||++|++++ ++.|.+||+.+ ++... ....| ...|.+++|
T Consensus 21 ~~~i~~~d~~~~~~~~----~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRV----VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK---VDTGFATICNNDHGI 92 (297)
T ss_dssp CEEEEEEETTTTEEEE----EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE---CCCTTCCCBCSCCEE
T ss_pred ceeEEEEeCCCCceee----eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE---eccccccccccceEE
Confidence 3999999998766442 334788999999999999999987 77899999998 76443 23344 467899999
Q ss_pred ecCCCcEEEEEEe--CCCcEEE--EECCCCceeeEeccCCCcEEEEeecccCCCcEEE-EEecCCeEEEEECCCC-CceE
Q 001403 442 SAPCKQISVITCG--DDKTIKV--WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGKIKAWLYDSL-GARV 515 (1084)
Q Consensus 442 s~d~~~l~l~s~~--~d~~i~v--wd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~dg~i~iwd~~~~-~~~~ 515 (1084)
+||++ ++++++ .++.+.| |+..++. ...+..+. .+..++|++ +++.|+ +++.++.+++|+++.. ....
T Consensus 93 spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~sp--dg~~l~~~~~~~~~~~l~~~~~~~~~~~ 166 (297)
T 2ojh_A 93 SPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSP--DGKSFTYCGIRDQVFDIYSMDIDSGVET 166 (297)
T ss_dssp CTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECT--TSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred CCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECC--CCCEEEEEECCCCceEEEEEECCCCcce
Confidence 99999 677777 3344455 4555554 44454443 488888855 666666 7889999999997543 3445
Q ss_pred eecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCC-CceEeeeeeccccccCceEEEEEcCCCCEEEEEECC---
Q 001403 516 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--- 591 (1084)
Q Consensus 516 ~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--- 591 (1084)
.+..+...+.+++|+|+|+.+++++.. ++.+.+|++. .+.....+..+. ..+..++|+|++++|++++.+
T Consensus 167 ~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~ 240 (297)
T 2ojh_A 167 RLTHGEGRNDGPDYSPDGRWIYFNSSR---TGQMQIWRVRVDGSSVERITDSA---YGDWFPHPSPSGDKVVFVSYDADV 240 (297)
T ss_dssp ECCCSSSCEEEEEECTTSSEEEEEECT---TSSCEEEEEETTSSCEEECCCCS---EEEEEEEECTTSSEEEEEEEETTC
T ss_pred EcccCCCccccceECCCCCEEEEEecC---CCCccEEEECCCCCCcEEEecCC---cccCCeEECCCCCEEEEEEcCCCC
Confidence 556667789999999999998877631 3346666654 344455666555 678899999999999988765
Q ss_pred --------CcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCC
Q 001403 592 --------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 636 (1084)
Q Consensus 592 --------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 636 (1084)
+.|++||+.+++.........+...+..++|+|++++|++++.+.
T Consensus 241 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 241 FDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 569999999887644443222233578899999999999887753
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.6e-19 Score=195.69 Aligned_cols=248 Identities=12% Similarity=0.153 Sum_probs=170.1
Q ss_pred CCCCccEEEecCCCCEEEEEe---CCeEEEEEcCCce--eEEEEcCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEEcC
Q 001403 793 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFK--TILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNAR 866 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~i~iwd~~ 866 (1084)
+...+..++|+|||+++++.. ++.|.+|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345677899999999444443 3789999998766 3444455667788999999 888888777 78999999996
Q ss_pred C-c--eeeeeecc---------cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCceeeeeeeecCCCCccCCCCceE
Q 001403 867 S-S--EVISKLEG---------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETH 933 (1084)
Q Consensus 867 ~-~--~~~~~l~~---------h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 933 (1084)
. + +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++......+....+ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 3 3 23333321 12348899999999977777778999999998 554333222222222 24678
Q ss_pred EEEccCCCEEEEE--eCCeEEEEEcCC--cceeeE-eecCCC------CCEEEEEEccCCCEEE-EEeCCCcEEEEEcCC
Q 001403 934 IQFHKDQTRFLLV--HETHLAIYEAEE--LTCLKQ-WFPISS------VPISQATFSCDCRMVF-TSFVDGTLSIHEASN 1001 (1084)
Q Consensus 934 ~~~s~dg~~la~~--~d~~i~vwd~~~--~~~~~~-~~~~h~------~~v~~l~fs~dg~~l~-t~~~dg~i~vwd~~~ 1001 (1084)
++|+|||++++++ .++.|.+|++.. ++.... ...... ..+..++|+|||++|+ +...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999987774 567899999874 443211 111111 4588999999999884 555689999999973
Q ss_pred C---ceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCC-CcEEEEcCCCCCC
Q 001403 1002 L---EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPGD 1057 (1084)
Q Consensus 1002 ~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~d-g~v~vw~~~~~~~ 1057 (1084)
. +.+..+. . ++ -.+..++|+| ||++|++++.+ +.|.+|++....+
T Consensus 272 ~g~~~~~~~~~------~--~~--~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg 320 (347)
T 3hfq_A 272 DGHLTLIQQIS------T--EG--DFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSG 320 (347)
T ss_dssp GGCEEEEEEEE------C--SS--SCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTC
T ss_pred CCcEEEeEEEe------c--CC--CCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCC
Confidence 3 2232222 1 01 2345789999 58888887765 8999997754433
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-18 Score=192.29 Aligned_cols=306 Identities=12% Similarity=0.118 Sum_probs=201.2
Q ss_pred EEcCCCceeeeecccccCccccccceEEEEEcCC--ccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC----CEEEE
Q 001403 341 DFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGA--CSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK----HIVQL 414 (1084)
Q Consensus 341 ~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~--~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d----g~v~i 414 (1084)
+..+...++.+|.+.... ++.|.+|++.. +...... .. +...+..++|+|||++|++++.+ +.|.+
T Consensus 8 ~~~~~~~~~~vg~y~~~~-----~~~i~~~~~d~~~g~~~~~~--~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~ 79 (361)
T 3scy_A 8 STTDSELTMLVGTYTSGN-----SKGIYTFRFNEETGESLPLS--DA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSA 79 (361)
T ss_dssp CGGGGEEEEEEEECCSSS-----CCEEEEEEEETTTCCEEEEE--EE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEE
T ss_pred hhCCCceEEEEEeccCCC-----CCCEEEEEEeCCCCCEEEee--cc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEE
Confidence 345556677777654211 37889998754 3332222 22 66788889999999999999875 79999
Q ss_pred EEccCC-ccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe------cc--------CCCc
Q 001403 415 YAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF------EG--------HGAP 479 (1084)
Q Consensus 415 wd~~~~-~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~------~~--------h~~~ 479 (1084)
|+++.. ..+..+.....+......+++ +++. ++++...++.|.+|++.+...+..+ .+ +...
T Consensus 80 ~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~ 156 (361)
T 3scy_A 80 FAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPH 156 (361)
T ss_dssp EEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCC
T ss_pred EEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCc
Confidence 998763 223333344445556777888 7773 3344446889999999754433221 11 1234
Q ss_pred EEEEeecccCCCcEEEEEe-cCCeEEEEECCCCCc------e-------EeecCCCCeEEEEEEcCCCCEEEEEeeCCCC
Q 001403 480 VYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA------R-------VDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 545 (1084)
Q Consensus 480 v~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~------~-------~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 545 (1084)
+.+++|+ ++|+++++++ .++.|.+|+++.... . ............++|+|||++++++.. .
T Consensus 157 ~~~~~~s--pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~ 231 (361)
T 3scy_A 157 LHCVRIT--PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE---I 231 (361)
T ss_dssp EEEEEEC--TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET---T
T ss_pred ceEEEEC--CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC---C
Confidence 5778885 4777665554 588999999886542 1 222334456789999999999887763 3
Q ss_pred CeeEEEecCCCceE--eeeeeccccccCceEEEEEcCCCCEEEEEECC--CcEEEEECC--CCe--EEEEEcCCCCCCCc
Q 001403 546 ESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--HVIKIWDMN--KVQ--LLTTIDAGGGLPEN 617 (1084)
Q Consensus 546 ~~~i~~wd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~iwd~~--~~~--~~~~~~~~~~~~~v 617 (1084)
++.|.+||+.+++. +..+.....+......++|+||+++|+++..+ +.|.+|++. +++ .+..+.. + ..+
T Consensus 232 ~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g--~~~ 308 (361)
T 3scy_A 232 GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G--IHP 308 (361)
T ss_dssp TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S--SCC
T ss_pred CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C--CCC
Confidence 66799999987755 23333322222456899999999999776654 899999985 455 3444443 2 246
Q ss_pred ceEEEecCCCEEEEEE-CCCeEEEEEc--CCCCeeeec-cccccceeEEEEc
Q 001403 618 PRICFNKNGTLLAVIA-NENRIKILET--PESNSVDAA-GVLSDNLRKLSVN 665 (1084)
Q Consensus 618 ~~v~~s~~~~~l~~~~-~dg~i~iwd~--~~~~~~~~~-~~~~~~i~~~~~~ 665 (1084)
..++|+|||++|+++. .++.|.+|++ .+++..... ..+.....|+.|.
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 309 RNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred ceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 7999999999998888 5789999655 455544333 2334456666553
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-18 Score=192.62 Aligned_cols=273 Identities=10% Similarity=0.115 Sum_probs=183.9
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeC---CCEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~---dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
+.+.+|++..............+...+..++|+|||+ |++++. ++.|.+|++.+++. +....+..+...+..++|
T Consensus 16 ~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEE
T ss_pred CCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEE
Confidence 5677877764322222211233556788899999999 555543 68999999987653 333344567788999999
Q ss_pred ecCCCcEEEEEEe-CCCcEEEEECC-CCc--eeeEecc---------CCCcEEEEeecccCCCcEEEEEecCCeEEEEEC
Q 001403 442 SAPCKQISVITCG-DDKTIKVWDAV-TGS--RTYSFEG---------HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY 508 (1084)
Q Consensus 442 s~d~~~l~l~s~~-~d~~i~vwd~~-~g~--~~~~~~~---------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 508 (1084)
+|||+ +|++++ .++.|.+|++. +|. .+..+.. +...+.+++|+| +|+++++...++.|.+|++
T Consensus 94 spdg~--~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp--dg~l~v~~~~~~~v~~~~~ 169 (347)
T 3hfq_A 94 DEARQ--LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP--DNRLAVIDLGSDKVYVYNV 169 (347)
T ss_dssp ETTTT--EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT--TSCEEEEETTTTEEEEEEE
T ss_pred CCCCC--EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC--CCcEEEEeCCCCEEEEEEE
Confidence 99999 566666 68999999986 333 2333322 123478899955 6667777777899999999
Q ss_pred CC-CCceE--eec-CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC--ceEe--eeeecccc---ccCceEEEE
Q 001403 509 DS-LGARV--DYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GAIK--RTYQGLQL---QHNSVSVVH 577 (1084)
Q Consensus 509 ~~-~~~~~--~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~--~~~~--~~~~~~~~---~~~~v~~~~ 577 (1084)
+. +.... ... ........++|+|||++++++.. .++.|.+|++.. ++.. ..+..... ....+..++
T Consensus 170 ~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 246 (347)
T 3hfq_A 170 SDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE---LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIR 246 (347)
T ss_dssp CTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEE
T ss_pred CCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEE
Confidence 83 33221 112 23346778999999998877653 356789998774 5432 22222210 013588899
Q ss_pred EcCCCCEEEE-EECCCcEEEEECCC---CeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC-CeEEEEEc--CCCCe
Q 001403 578 FDTAKDQILA-AGDDHVIKIWDMNK---VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-NRIKILET--PESNS 648 (1084)
Q Consensus 578 ~s~~~~~l~~-~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~--~~~~~ 648 (1084)
|+|+|++|++ ...++.|.+|++.. .+.+..+..++. .+..++|+|||++|+++..+ +.+.+|++ .+++.
T Consensus 247 ~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 247 LSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD--FPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp ECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSS--CCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred ECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCC--CcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 9999998854 56789999999972 244555554332 46899999999998888764 89999955 45543
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.6e-20 Score=219.93 Aligned_cols=272 Identities=11% Similarity=0.062 Sum_probs=197.1
Q ss_pred CCCceEEEEcCCCceeeeecc-cccCccccccceEEEEEcCCccccceeeeecCCC-CCeEEEEEcCCCCEEEEEeC---
Q 001403 334 SSSPMSMDFHPVQHTLLLGLW-DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYS--- 408 (1084)
Q Consensus 334 ~~~V~~v~~spdg~~las~~~-d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~-~~V~~v~fspdg~~las~~~--- 408 (1084)
..+|.+++|||||++||+++. | ++++||++.++... . +..|. ..|..++|||| +.+++++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~---------g~~~lw~~~~g~~~---~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g 86 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSE---------GSVNAYLYDGGETV---K-LNREPINSVLDPHYGVG-RVILVRDVSKG 86 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEET---------TEEEEEEEETTEEE---E-CCSSCCSEECEECTTCS-EEEEEEECSTT
T ss_pred ccchheeecCCCCCeEEEEEccC---------CceeEEEEcCCCcE---e-eecccccccccccCCCC-eEEEEeccCCC
Confidence 448999999999999999765 5 89999998654332 1 33344 68999999999 77777765
Q ss_pred CCEEEEEEccC--CccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeec
Q 001403 409 KHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 486 (1084)
Q Consensus 409 dg~v~iwd~~~--~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~ 486 (1084)
+....+|.+.. ..... .+..+. .+...+|+|||+.+++++++.++ +.+||+.+++.......+. .+++|+
T Consensus 87 ~~~~~l~~~~~~~~g~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~---~~~~~s 158 (582)
T 3o4h_A 87 AEQHALFKVNTSRPGEEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG---FGFVSD 158 (582)
T ss_dssp SCCEEEEEEETTSTTCCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS---CEEEEE
T ss_pred CcceEEEEEeccCCCccc---cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC---ceEEEC
Confidence 44466665543 21112 222222 34467899999875666666555 4599999987655444333 667775
Q ss_pred ccCCCcEEEEEecC----CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee
Q 001403 487 AKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 487 ~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 562 (1084)
+||++|++++.+ +.|++||+.+++.. .+..+...+..++|||||+.|+++.. ++...|++||+.+++.. .
T Consensus 159 --pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~~~~~~~-~ 232 (582)
T 3o4h_A 159 --IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDPRDGSVE-D 232 (582)
T ss_dssp --EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECTTTCCEE-E
T ss_pred --CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcCCCCcEE-E
Confidence 477899988877 78999999877655 56677778899999999999995433 33458999999999887 6
Q ss_pred eeccccccCceEEEE--------EcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEEC
Q 001403 563 YQGLQLQHNSVSVVH--------FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 634 (1084)
Q Consensus 563 ~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 634 (1084)
+.++. ..+..++ |+|||..+++++.++.+++|++ |+..... ...+.+++|+ +++.+++++.
T Consensus 233 ~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-----~~~v~~~~~s-dg~~l~~~s~ 301 (582)
T 3o4h_A 233 LELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-----QGNHGRVVLW-RGKLVTSHTS 301 (582)
T ss_dssp CCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC-----SSEEEEEEEE-TTEEEEEEEE
T ss_pred ccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC-----CCceEEEEec-CCEEEEEEcC
Confidence 66655 4455555 9999988888999999999999 6655421 1347889999 9999988877
Q ss_pred CCe---EEEEEcC
Q 001403 635 ENR---IKILETP 644 (1084)
Q Consensus 635 dg~---i~iwd~~ 644 (1084)
+.. +.+|+..
T Consensus 302 ~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 302 LSTPPRIVSLPSG 314 (582)
T ss_dssp TTEEEEEEEETTC
T ss_pred CCCCCeEEEEcCC
Confidence 643 5566554
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-19 Score=196.07 Aligned_cols=247 Identities=12% Similarity=0.065 Sum_probs=182.6
Q ss_pred CccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCC-ccccceeeeecCC-CCCeEEEEEcCC
Q 001403 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGA-CSMLFKTALVRDP-GVSVNRVVWSPD 399 (1084)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~-~~~~~~~~~~~~h-~~~V~~v~fspd 399 (1084)
+.......+..|...|.+++|||||++||++. + +.|.+||+.+ +.... +..+| ...|.+++|+||
T Consensus 29 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~---------~~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 29 IRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-E---------GLLYRLSLAGDPSPEK---VDTGFATICNNDHGISPD 95 (297)
T ss_dssp TTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-T---------TEEEEEESSSCCSCEE---CCCTTCCCBCSCCEECTT
T ss_pred CCCCceeeeccCCcceEeeEECCCCCEEEEEc-C---------CeEEEEeCCCCCCceE---eccccccccccceEECCC
Confidence 33444556677888999999999999999963 3 8899999988 54432 23344 478899999999
Q ss_pred CCEEEEEe--CCCEEEEEE--ccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC-CCceeeEec
Q 001403 400 GSLLGVAY--SKHIVQLYA--YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFE 474 (1084)
Q Consensus 400 g~~las~~--~dg~v~iwd--~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~-~g~~~~~~~ 474 (1084)
|++|++++ .++.+.||. ..++. .. .+..+. .+.+++|+||++. ++++++.++.+++|++. .+.....+.
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~-~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~~~~~~~ 169 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKNL-PSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSGVETRLT 169 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSSS-SEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecCC-CccceEECCCCCE-EEEEECCCCceEEEEEECCCCcceEcc
Confidence 99999998 334455554 45543 22 333333 4889999999994 33477789999999853 233446677
Q ss_pred cCCCcEEEEeecccCCCcEEEEEe-cCCeEEEEECC-CCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCC-------C
Q 001403 475 GHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-------G 545 (1084)
Q Consensus 475 ~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~-------~ 545 (1084)
.|...+.+++|++ ++..++.++ .++.+++|+++ .......+..+...+..++|+|+|++|++++.++. +
T Consensus 170 ~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 247 (297)
T 2ojh_A 170 HGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDL 247 (297)
T ss_dssp CSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSE
T ss_pred cCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccC
Confidence 7888999999955 667777665 58999999987 44556666667778999999999999998876432 2
Q ss_pred CeeEEEecCCCceEeee--eeccccccCceEEEEEcCCCCEEEEEECCC
Q 001403 546 ESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAAGDDH 592 (1084)
Q Consensus 546 ~~~i~~wd~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 592 (1084)
...|++||+.+++.... +.++. ..+..++|+|++++|++++.+.
T Consensus 248 ~~~l~~~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 248 DVRVQLMDMDGGNVETLFDLFGGQ---GTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEETTSCSCEEEEEEEEST---TTSCSCCBCTTSSEEEEEEECC
T ss_pred ceEEEEEecCCCCceeeeccCCCC---cccccceECCCCCEEEEEEecc
Confidence 36799999998866433 33555 6788899999999998877553
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-17 Score=185.82 Aligned_cols=312 Identities=11% Similarity=0.104 Sum_probs=196.2
Q ss_pred CCCCEEEEEeeCCCCCeeEEEecC--CCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC----CcEEEEECCC--C
Q 001403 531 ANGRRLFSCGTSKEGESFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNK--V 602 (1084)
Q Consensus 531 ~d~~~l~~~~~~~~~~~~i~~wd~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~--~ 602 (1084)
+...++++++....+++.|++|++ .+++.......+. ..+..++|+|++++|++++.+ +.|.+|++.. +
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~---~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g 87 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEV---ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG 87 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEEC---SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccC---CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC
Confidence 444556666554444556777755 5565543333233 667889999999999998876 7999998765 5
Q ss_pred eEEEEEcCCCCCCCcceEEEecCCCEEEEEE-CCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeE
Q 001403 603 QLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 681 (1084)
Q Consensus 603 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~ 681 (1084)
+................+++ ++++++++. .++.+.+|++.....+.....
T Consensus 88 ~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~--------------------------- 138 (361)
T 3scy_A 88 TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD--------------------------- 138 (361)
T ss_dssp EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE---------------------------
T ss_pred cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce---------------------------
Confidence 44322221111223456666 788777776 578999999875422211100
Q ss_pred ecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccC
Q 001403 682 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT 761 (1084)
Q Consensus 682 ~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~ 761 (1084)
.+.. .+.
T Consensus 139 -------------------------------------------------~~~~--~g~---------------------- 145 (361)
T 3scy_A 139 -------------------------------------------------VIEF--KGS---------------------- 145 (361)
T ss_dssp -------------------------------------------------EEEC--CCC----------------------
T ss_pred -------------------------------------------------eEEc--cCC----------------------
Confidence 0000 000
Q ss_pred cCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--CCeEEEEEcCCce-------e-----
Q 001403 762 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK-------T----- 827 (1084)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~-------~----- 827 (1084)
+. .+...+...+.+++|+|||+++++++ ++.|.+|++.... .
T Consensus 146 ------------------~~------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~ 201 (361)
T 3scy_A 146 ------------------GP------DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT 201 (361)
T ss_dssp ------------------CS------CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred ------------------CC------CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence 00 00001233467788888888776665 5788888876433 1
Q ss_pred -EEEEcCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEEcCCcee--eeee---cccccCEEEEEEcCCCCEEEEEeCC-
Q 001403 828 -ILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEV--ISKL---EGHSKRVTGLVFSDALNILVSSGGD- 899 (1084)
Q Consensus 828 -~~~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~i~iwd~~~~~~--~~~l---~~h~~~V~~l~~spd~~~l~s~s~d- 899 (1084)
......+...+..++|+| +++++++++ .++.|.+|++.+++. +..+ ..+...+.+++|+|||++|+++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~ 280 (361)
T 3scy_A 202 PEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK 280 (361)
T ss_dssp EEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred ccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence 122233455678999999 888777776 689999999987754 2222 3344567899999999998766654
Q ss_pred -CcEEEEeCC--CCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE--eCCeEEEEE--cCCcceeeEeecCCCCC
Q 001403 900 -AQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYE--AEELTCLKQWFPISSVP 972 (1084)
Q Consensus 900 -g~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~i~vwd--~~~~~~~~~~~~~h~~~ 972 (1084)
+.|.+|++. +++......+.. + ..+..++|+|||++|+++ .++.|.+|+ ..+|+........+...
T Consensus 281 ~~~i~v~~~~~~~g~~~~~~~~~~--g-----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~ 353 (361)
T 3scy_A 281 ADGVAIFKVDETNGTLTKVGYQLT--G-----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDK 353 (361)
T ss_dssp SCEEEEEEECTTTCCEEEEEEEEC--S-----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSS
T ss_pred CCEEEEEEEcCCCCcEEEeeEecC--C-----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCC
Confidence 899999996 444333222222 1 247799999999999885 467899964 45676554322234567
Q ss_pred EEEEEEc
Q 001403 973 ISQATFS 979 (1084)
Q Consensus 973 v~~l~fs 979 (1084)
+.|+.|.
T Consensus 354 p~~v~~~ 360 (361)
T 3scy_A 354 PVCLKFV 360 (361)
T ss_dssp EEEEEEE
T ss_pred CeEEEEc
Confidence 8899886
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.5e-20 Score=225.73 Aligned_cols=340 Identities=8% Similarity=0.059 Sum_probs=222.4
Q ss_pred cCCCCCCCCcchhhhcccccCCCccCCCcc-ceeeecccCCC---CceEEEEcCCCceeeeecccccCccccccceEEEE
Q 001403 295 KNIPDYSPKSSLKKEMFQSFGETSFSDFPK-TVAQTLIEGSS---SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVW 370 (1084)
Q Consensus 295 ~s~~~fsP~~s~~~~~f~~~~~~~~~~~p~-~~~~~l~~h~~---~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iw 370 (1084)
+..+.|+|++.++..- ..+..++.+... ...+.+.+|.. .|.+++|||||++||+++.....-..-.++.|++|
T Consensus 18 ~~~~~~s~dg~~~~~~--~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 18 TFFPNWISGQEYLHQS--ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCCCEESSSSEEEEEC--TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCccEECCCCeEEEEc--CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence 3457899998654332 123334444443 33444445543 49999999999999997652000000013899999
Q ss_pred EcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccE--------------
Q 001403 371 DIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNV-------------- 436 (1084)
Q Consensus 371 d~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V-------------- 436 (1084)
|+.++....... + ...+..++|||||++||++. ++.|++||+.+++..+. ...++...|
T Consensus 96 d~~~g~~~~~~~-l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l--~~~~~~~~v~~g~~~~v~~ee~~ 168 (719)
T 1z68_A 96 DLSNGEFVRGNE-L---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI--TFNGRENKIFNGIPDWVYEEEML 168 (719)
T ss_dssp ETTTTEECCSSC-C---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC--CCCCBTTTEEESSCCHHHHHHTT
T ss_pred ECCCCcccccee-c---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE--ecCCCcCCeEcccccceeeeecc
Confidence 998876521111 1 25688999999999999986 67899999998865431 112333222
Q ss_pred ---eEEEeecCCCcEEEEEEeCCC----------------------------------cEEEEECCCCcee--------e
Q 001403 437 ---NDLAFSAPCKQISVITCGDDK----------------------------------TIKVWDAVTGSRT--------Y 471 (1084)
Q Consensus 437 ---~~l~~s~d~~~l~l~s~~~d~----------------------------------~i~vwd~~~g~~~--------~ 471 (1084)
.+++|||||+ .|++++.|. .|++||+.+++.. .
T Consensus 169 ~~~~~~~wSPDG~--~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 246 (719)
T 1z68_A 169 ATKYALWWSPNGK--FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA 246 (719)
T ss_dssp CSSCCEEECTTSS--EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH
T ss_pred cCcccEEECCCCC--EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc
Confidence 4899999999 677766542 7899999988753 2
Q ss_pred EeccCCCcEEEEeecccCCCcEEEEEecC----CeEEEEE----CCCCCceEee----cCCCCeEE-----EEEEcCCCC
Q 001403 472 SFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWL----YDSLGARVDY----DAPGLGCT-----RMAYSANGR 534 (1084)
Q Consensus 472 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~iwd----~~~~~~~~~~----~~~~~~i~-----~~~~s~d~~ 534 (1084)
.+.+|...+.+++|+| |+.++++.... ..|.+|| ..+++....+ ..+...+. .++|+|||+
T Consensus 247 ~~~~~~~~~~~~~~Sp--D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 324 (719)
T 1z68_A 247 MIASSDYYFSWLTWVT--DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAI 324 (719)
T ss_dssp HHHTSCEEEEEEEESS--SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred cCCCCcceEEEeEEeC--CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCC
Confidence 2446888899999966 56777764433 2488888 6665444333 34455555 789999999
Q ss_pred EEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC-----CcEEEEECCC--Ce-EEE
Q 001403 535 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNK--VQ-LLT 606 (1084)
Q Consensus 535 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~--~~-~~~ 606 (1084)
.++....+.++...|++||+.+++. ..+..+. ..+..+.+. +++.++..+.+ +..++|.+.. +. ...
T Consensus 325 ~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~---~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 399 (719)
T 1z68_A 325 SYYKIFSDKDGYKHIHYIKDTVENA-IQITSGK---WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKK 399 (719)
T ss_dssp CEEEEEECTTSCEEEEEESSCSTTC-EECSCSS---SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEE
T ss_pred eEEEEEEccCCceEEEEEECCCCce-EecccCc---eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCce
Confidence 8877555556677899999988763 4444433 457777777 88888877654 7888887653 42 123
Q ss_pred EEcC--CCCCCCcceEEEecCCCEEEEEEC-C--CeEEEEEcCCCCeeeec
Q 001403 607 TIDA--GGGLPENPRICFNKNGTLLAVIAN-E--NRIKILETPESNSVDAA 652 (1084)
Q Consensus 607 ~~~~--~~~~~~v~~v~~s~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~ 652 (1084)
.+.. .++...+..+.|+|++++++.... . ..+.+|++.+++....+
T Consensus 400 ~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~ 450 (719)
T 1z68_A 400 CVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKIL 450 (719)
T ss_dssp ESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEE
T ss_pred eccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEe
Confidence 3331 112234678999999988775433 2 57889998877654433
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-19 Score=214.25 Aligned_cols=237 Identities=16% Similarity=0.167 Sum_probs=176.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeC-CCEEEEEEccCCccccceeeeeccc-ccEeEEEeecCCCcEEEEEEeC---CCcEEE
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---DKTIKV 461 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~-dg~v~iwd~~~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~l~s~~~---d~~i~v 461 (1084)
+..+|.+++|||||++||+++. ||++.||++++++.. .+..|. ..+..++|||| + ++++++. +....+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHAL 92 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEE
Confidence 3468999999999999999887 999999999776543 344555 68999999999 5 6776664 455566
Q ss_pred EECCC---CceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEE
Q 001403 462 WDAVT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 538 (1084)
Q Consensus 462 wd~~~---g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 538 (1084)
|.+.. |... .+..+. .+...+|++++++..+++++.++.. +||+++++.......+. .+++|+|||+++++
T Consensus 93 ~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~ 166 (582)
T 3o4h_A 93 FKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG---FGFVSDIRGDLIAG 166 (582)
T ss_dssp EEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS---CEEEEEEETTEEEE
T ss_pred EEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC---ceEEECCCCCEEEE
Confidence 54432 3322 443322 2335577777665556666555554 99998876544443333 78999999999998
Q ss_pred EeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCC--cEEEEECCCCeEEEEEcCCCCCCC
Q 001403 539 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGLPE 616 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~ 616 (1084)
++.+..+...|++||+.+++.. .+..+. ..+..++|+|||+.|+++..++ .|++||+.+++.. .+..+. ..
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~~~-~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~--~~ 239 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGGLR-VFDSGE---GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS--KD 239 (582)
T ss_dssp EEEEETTEEEEEEEETTTCCCE-EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC--SH
T ss_pred EEEcCCCCeEEEEEcCCCCCce-EeecCC---CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC--cC
Confidence 8765444477999999988765 555555 6789999999999999888888 8999999998887 554332 23
Q ss_pred cceEE--------EecCCCEEEEEECCCeEEEEEc
Q 001403 617 NPRIC--------FNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 617 v~~v~--------~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
+..++ |+|||.++++++.++.+++|++
T Consensus 240 ~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 240 FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 55666 9999998999999999999998
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.1e-19 Score=200.00 Aligned_cols=311 Identities=10% Similarity=0.015 Sum_probs=204.3
Q ss_pred ccCCCccceeeecccCCCCceE-----EEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeE
Q 001403 318 SFSDFPKTVAQTLIEGSSSPMS-----MDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 392 (1084)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~-----v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~ 392 (1084)
++..........|..|...+.. .+|||||++||+...+ .|. ..|.+||+.++.... +..+|...+.
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~--~g~----~~l~~~d~~~g~~~~---lt~~~~~~~~ 84 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAF--DGP----WNYYLLDLNTQVATQ---LTEGRGDNTF 84 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT--TSS----CEEEEEETTTCEEEE---CCCSSCBCSS
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcC--CCC----ceEEEEeCCCCceEE---eeeCCCCCcc
Confidence 3334445566778877766655 8999999999997652 111 358888988765432 2445666666
Q ss_pred EEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEE--eecCCCcEEEEE------------------
Q 001403 393 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVIT------------------ 452 (1084)
Q Consensus 393 ~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~--~s~d~~~l~l~s------------------ 452 (1084)
.++|||||++|++++.++.|.+||+.+++... ....+...+.... +++|++ .++.
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~ 159 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFH 159 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHH
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchhh
Confidence 78899999999999999999999999987543 2334444444443 489998 4543
Q ss_pred ----EeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecC------CeEEEEECCCCCceEeecCCC-
Q 001403 453 ----CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPG- 521 (1084)
Q Consensus 453 ----~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~- 521 (1084)
.+.+..|.+||+.+|+.. .+..+...+..+.|+|. ||..|+..+.+ ..|.++|.+............
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 237 (388)
T 3pe7_A 160 EFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEG 237 (388)
T ss_dssp HHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTT
T ss_pred hhhccCCcceEEEEECCCCceE-EeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCC
Confidence 224578999999998654 45556777888998541 56777776653 367777876654443333332
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCC-CCeeEEEecCCCceEeee--eeccccccCceEEEEEcCCCCEEEEE---------E
Q 001403 522 LGCTRMAYSANGRRLFSCGTSKE-GESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAA---------G 589 (1084)
Q Consensus 522 ~~i~~~~~s~d~~~l~~~~~~~~-~~~~i~~wd~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~---------~ 589 (1084)
..+..++|+|||+.|+..+.... ....|++||+.+++.... +.++...........|+|||+.|+.. .
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 317 (388)
T 3pe7_A 238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIE 317 (388)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------C
T ss_pred cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccC
Confidence 35778999999998877654322 123599999999875332 22211000001123699999988864 4
Q ss_pred CCCcEEEEECCCCeEEEEEcCCCCCC--------CcceEEEecCCCEEEEEEC-CCeEEEEEcC
Q 001403 590 DDHVIKIWDMNKVQLLTTIDAGGGLP--------ENPRICFNKNGTLLAVIAN-ENRIKILETP 644 (1084)
Q Consensus 590 ~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~ 644 (1084)
.+..|++||+.+++............ .+..++|+|||+.|+..+. +|...||.+.
T Consensus 318 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 318 NDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 56789999999987654443322111 3678899999998887765 5666666543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-18 Score=213.50 Aligned_cols=278 Identities=14% Similarity=0.112 Sum_probs=187.9
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCC-----eEEEEEcCCCCEEEEEeCC-
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS-----VNRVVWSPDGSLLGVAYSK- 409 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~-----V~~v~fspdg~~las~~~d- 409 (1084)
...+++|+|||++++++ | ++|++||+.++... .++.+|... ...++|||||++|++++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~---------~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~ 83 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--E---------NNILVFNAEYGNSS---VFLENSTFDEFGHSINDYSISPDGQFILLEYNYV 83 (740)
T ss_dssp CCCCEEECSSSEEEEEE--T---------TEEEEEETTTCCEE---EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEE
T ss_pred cccccEECCCCcEEEEc--C---------CcEEEEECCCCceE---EEEechhhhhhcccccceEECCCCCEEEEEECCe
Confidence 56689999999999996 5 89999999887643 235555432 3448899999999999876
Q ss_pred --------CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE-eccCCCcE
Q 001403 410 --------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPV 480 (1084)
Q Consensus 410 --------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~-~~~h~~~v 480 (1084)
+.+.+||+.+++.. .+..|.+.+...+|||||+ .|+.+. |+.|.+||+.+|...+. ..++...+
T Consensus 84 ~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~ 156 (740)
T 4a5s_A 84 KQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRITWTGKEDII 156 (740)
T ss_dssp ECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred eeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEEcCCCCccce
Confidence 56779999998754 3567788899999999999 566664 78999999988875432 22333333
Q ss_pred -----------------EEEeecccCCCcEEEEEecCCe-EEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001403 481 -----------------YSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 481 -----------------~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
.++.| ++||+.|+.++.|.+ +.+|++....... .+......+.+.+.|...
T Consensus 157 ~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~~~------ 225 (740)
T 4a5s_A 157 YNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGAVN------ 225 (740)
T ss_dssp EESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTSCC------
T ss_pred ecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcCcC------
Confidence 23667 558889988876655 8888764221110 233456677777776432
Q ss_pred CCCCeeEEEecCCC---c---eEeeeeeccc---cccCceEEEEEcCCCCEEEEEE----CCCcEEEEECCCCe----EE
Q 001403 543 KEGESFLVEWNESE---G---AIKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ----LL 605 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~---~---~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~----~~ 605 (1084)
....|++||+.+ + +.. .+.... .+...+..++|+|||+.++... .+..|++||+.+++ +.
T Consensus 226 --~~~~l~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~ 302 (740)
T 4a5s_A 226 --PTVKFFVVNTDSLSSVTNATSI-QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302 (740)
T ss_dssp --CEEEEEEEETTSCCSSSCCCEE-EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred --CeeEEEEEECCCCCCCCcceEE-EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence 234599999998 7 333 232200 0226789999999999766643 23479999999887 21
Q ss_pred --EEE--cCCCCCCC---cceEEEecCCCEEE-EEEC-C--CeEEEEEcCCCCe
Q 001403 606 --TTI--DAGGGLPE---NPRICFNKNGTLLA-VIAN-E--NRIKILETPESNS 648 (1084)
Q Consensus 606 --~~~--~~~~~~~~---v~~v~~s~~~~~l~-~~~~-d--g~i~iwd~~~~~~ 648 (1084)
..+ ..+..... ...++|+|||+.++ ..+. + ..|++|+..++..
T Consensus 303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~ 356 (740)
T 4a5s_A 303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC 356 (740)
T ss_dssp GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence 111 22222111 23789999999887 6654 3 4577777775543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-18 Score=209.41 Aligned_cols=379 Identities=12% Similarity=0.035 Sum_probs=242.1
Q ss_pred EEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCce--EEEEEcCCCCEEEEEECC---------C
Q 001403 524 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGDD---------H 592 (1084)
Q Consensus 524 i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~d---------g 592 (1084)
..+++|+|||+++++. ++.|++||+.+++....+.++......+ ..+.|||||++|+.++.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 4578999999988875 4569999999999888887776222222 448899999999998876 5
Q ss_pred cEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeecc-ccccceeEEEEcCCCcee
Q 001403 593 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPISTVT 671 (1084)
Q Consensus 593 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~ 671 (1084)
.+.+||+.+++... +.. +...+..++|||||+.||.+. ++.|++|+..++...+... ++...
T Consensus 93 ~~~~~d~~~~~~~~-l~~--~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~------------- 155 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT-EER--IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI------------- 155 (740)
T ss_dssp EEEEEETTTTEECC-SSC--CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT-------------
T ss_pred EEEEEECCCCcEEE-ccc--CCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccc-------------
Confidence 67799999998654 322 233588999999999999885 5899999998775433211 00000
Q ss_pred eeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecC-Cce
Q 001403 672 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVH 750 (1084)
Q Consensus 672 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i 750 (1084)
+..+. .-.+|.-+ -......+.|||||+.|+....| +.+
T Consensus 156 ---------------------~~~g~---~~~v~~ee----------------~~~~~~~~~wSpDg~~la~~~~d~~~v 195 (740)
T 4a5s_A 156 ---------------------IYNGI---TDWVYEEE----------------VFSAYSALWWSPNGTFLAYAQFNDTEV 195 (740)
T ss_dssp ---------------------EEESB---CCHHHHHH----------------TSSSSBCEEECTTSSEEEEEEEECTTC
T ss_pred ---------------------eecCc---ccccccch----------------hcCCCcceEECCCCCEEEEEEEcccCC
Confidence 00000 00011100 00123457899999999988765 447
Q ss_pred EEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCC---ce-
Q 001403 751 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT---FK- 826 (1084)
Q Consensus 751 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~---~~- 826 (1084)
.+|++..... .. .+...+..+.+.+.|... ...+|.+||+.+ ++
T Consensus 196 ~~~~~~~~~~-----------------~~------------~~~~~~~~~~yp~~G~~~---~~~~l~v~d~~~~~~~~~ 243 (740)
T 4a5s_A 196 PLIEYSFYSD-----------------ES------------LQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSLSSVTN 243 (740)
T ss_dssp CEEEEEECCS-----------------TT------------CSSCEEEEEECCBTTSCC---CEEEEEEEETTSCCSSSC
T ss_pred ceEEEEeecC-----------------CC------------CCCCcceeecCCCCcCcC---CeeEEEEEECCCCCCCCc
Confidence 7776542210 00 133445566777666431 123689999998 73
Q ss_pred -eEEEEcC------CCCCeEEEEEcCCCCcEEEEEeC----CCeEEEEEcCCce----ee--eee--cccccCEE-----
Q 001403 827 -TILTIMP------PSPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSE----VI--SKL--EGHSKRVT----- 882 (1084)
Q Consensus 827 -~~~~~~~------~~~~i~~l~~s~~d~~~la~g~~----dg~i~iwd~~~~~----~~--~~l--~~h~~~V~----- 882 (1084)
....+.. +...+..++||| |+++++.... +..|++||+.+++ +. ..+ .+|...|.
T Consensus 244 ~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~ 322 (740)
T 4a5s_A 244 ATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS 322 (740)
T ss_dssp CCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC
T ss_pred ceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCC
Confidence 2334432 667799999999 7886665533 3479999999987 32 222 44665554
Q ss_pred EEEEcCCCCEEE-EEeCC---CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeC-----C--e
Q 001403 883 GLVFSDALNILV-SSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----T--H 950 (1084)
Q Consensus 883 ~l~~spd~~~l~-s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d-----~--~ 950 (1084)
.++|+|||+.|+ ..+.+ ..|++||+.+++.. +...+.. .+..+. ++|++.|+. +.. + .
T Consensus 323 ~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-----~lT~g~~----~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ 392 (740)
T 4a5s_A 323 EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-----FITKGTW----EVIGIE-ALTSDYLYYISNEYKGMPGGRN 392 (740)
T ss_dssp CCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-----ESCCSSS----CEEEEE-EECSSEEEEEESCGGGCTTCBE
T ss_pred CceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-----ecccCCE----EEEEEE-EEeCCEEEEEEecCCCCCceeE
Confidence 789999999887 66543 46888999875522 2223322 344443 355777666 432 2 4
Q ss_pred EEEEEcCCcceeeEeec---CCCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeEEe
Q 001403 951 LAIYEAEELTCLKQWFP---ISSVPISQATFSCDCRMVFTSFVD---GTLSIHEASNLEVQCRI 1008 (1084)
Q Consensus 951 i~vwd~~~~~~~~~~~~---~h~~~v~~l~fs~dg~~l~t~~~d---g~i~vwd~~~~~~~~~~ 1008 (1084)
|+..++..+.....+.. +....+..+.|||||++++..... ..+.+++..+++....+
T Consensus 393 ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l 456 (740)
T 4a5s_A 393 LYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL 456 (740)
T ss_dssp EEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence 55566655443222221 124678899999999987765543 36888898888665444
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-18 Score=189.36 Aligned_cols=300 Identities=9% Similarity=0.003 Sum_probs=192.6
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEE-ECCCeEEEEEcCCCCeeeecc
Q 001403 575 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAG 653 (1084)
Q Consensus 575 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~ 653 (1084)
.+++++++..+++++.++.|++||..+++.+..+..+.. ..+..++|+|+|++++++ ..++.|.+||+.+++....+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC-CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 346788888999999999999999999999888875541 136789999999876554 468899999988765443221
Q ss_pred ccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEE
Q 001403 654 VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 733 (1084)
Q Consensus 654 ~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 733 (1084)
..... ......+..++
T Consensus 83 ~~~~~----------------------------------------------------------------~~~~~~~~~~~ 98 (349)
T 1jmx_B 83 LSSVP----------------------------------------------------------------GEVGRSMYSFA 98 (349)
T ss_dssp SCCST----------------------------------------------------------------TEEEECSSCEE
T ss_pred ccccc----------------------------------------------------------------ccccccccceE
Confidence 00000 00001123345
Q ss_pred EecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe
Q 001403 734 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 813 (1084)
Q Consensus 734 ~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s 813 (1084)
|+|+|+++++++.+.... ...+ ...
T Consensus 99 ~spdg~~l~~~~~~~~~~-----------------------------------------------------~~~~--~~~ 123 (349)
T 1jmx_B 99 ISPDGKEVYATVNPTQRL-----------------------------------------------------NDHY--VVK 123 (349)
T ss_dssp ECTTSSEEEEEEEEEEEC-----------------------------------------------------SSCE--EEC
T ss_pred ECCCCCEEEEEccccccc-----------------------------------------------------cccc--ccC
Confidence 555555554444320000 0000 001
Q ss_pred CCeEEEEEcCCcee---EEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccc-----------
Q 001403 814 GGVISLYIVMTFKT---ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK----------- 879 (1084)
Q Consensus 814 dg~i~vwd~~~~~~---~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~----------- 879 (1084)
++.|.+||+.+++. +..+.. ...+.+++|+| +++ +++++. .|++||+.+++.+..+..+..
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~-dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAAD-DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL 198 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECT-TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCC
T ss_pred CCeEEEEECCCccccceeeeccC-CCcccceeECC-CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccce
Confidence 47899999988543 344443 34688999999 787 555543 499999999988776653320
Q ss_pred -------------CEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEcc-CCCEEE
Q 001403 880 -------------RVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK-DQTRFL 944 (1084)
Q Consensus 880 -------------~V~~l~~spd~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la 944 (1084)
....+++++|+....... ....+..+|..+++......-. . ...+..++|+| ||++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~sp~dg~~l~ 271 (349)
T 1jmx_B 199 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD----L---TELYFTGLRSPKDPNQIY 271 (349)
T ss_dssp CCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE----C---SSCEEEEEECSSCTTEEE
T ss_pred eeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc----C---CCcceeeEecCCCCCEEE
Confidence 345577776653221110 1111223555554432211111 1 12578999999 999999
Q ss_pred EEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 945 LVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 945 ~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
++ ++.|.+||+.+++.+..+..+ ..+.+++|+|||++|++++.++.|++||+.+++.+..+.
T Consensus 272 ~~-~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 272 GV-LNRLAKYDLKQRKLIKAANLD--HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp EE-ESEEEEEETTTTEEEEEEECS--SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EE-cCeEEEEECccCeEEEEEcCC--CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 98 899999999999887765533 357799999999999999899999999999999887775
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.82 E-value=9.2e-19 Score=199.68 Aligned_cols=208 Identities=11% Similarity=0.053 Sum_probs=159.4
Q ss_pred CCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccc---------c---ceeeeecCCCCCeEEEEEcCCCCE
Q 001403 335 SSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSM---------L---FKTALVRDPGVSVNRVVWSPDGSL 402 (1084)
Q Consensus 335 ~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~---------~---~~~~~~~~h~~~V~~v~fspdg~~ 402 (1084)
..+..+++++++.+++++..| + ++||+...... . ........|...|.+++|+|||++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~d---------g-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 106 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGAS---------G-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLT 106 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETT---------E-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCE
T ss_pred CCccEEEEecCCCEEEEECCC---------E-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCE
Confidence 368999999999999998766 5 88887642110 0 000011235678999999999999
Q ss_pred EE----EEeCCCEEEEEEccCC--------ccccceeeeecccccEeEEEeecC-CCcEEEEEEeCCCcEEEEECCCCce
Q 001403 403 LG----VAYSKHIVQLYAYHGG--------SDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSR 469 (1084)
Q Consensus 403 la----s~~~dg~v~iwd~~~~--------~~~~~~~~l~~h~~~V~~l~~s~d-~~~l~l~s~~~d~~i~vwd~~~g~~ 469 (1084)
|| +++.|++|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++||++++..
T Consensus 107 lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 107 LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEE
T ss_pred EEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcc
Confidence 99 7788999999999865 222234456789999999999998 56 899999999999999999988
Q ss_pred eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCC-------CCeEEEEEEcCCCCEEEEEeeC
Q 001403 470 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 470 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
+....+|...|.+++|++ +|++|++|+.||.|++||.+ +.....+..+ ...+.+++|++++.++++.+..
T Consensus 185 ~~~~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEEECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred eeeccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 777788999999999965 67899999999999999998 4444444332 2389999999998888765532
Q ss_pred C---CCCeeEEEecCCCc
Q 001403 543 K---EGESFLVEWNESEG 557 (1084)
Q Consensus 543 ~---~~~~~i~~wd~~~~ 557 (1084)
. +....+++|++...
T Consensus 262 dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TCCSSSCCEEEEEECCCT
T ss_pred CCccCCCCceEEEEeccC
Confidence 1 11234889998754
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.4e-19 Score=200.99 Aligned_cols=270 Identities=12% Similarity=0.096 Sum_probs=185.3
Q ss_pred CCCccEEEecCCCCEEEEEeCCeEEEEEcCCce----------eEEE-----EcCCCCCeEEEEEcCCCCcEEE----EE
Q 001403 794 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFK----------TILT-----IMPPSPTATSLAFNPHDNNVIA----IG 854 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~----------~~~~-----~~~~~~~i~~l~~s~~d~~~la----~g 854 (1084)
...+..+++++++.++++++...+++|+..... .... ...+...|.+++|+| ++++|| +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEecc
Confidence 446889999999999999986569998864211 1111 112456799999999 889999 78
Q ss_pred eCCCeEEEEEcCCc--------e---eeeeecccccCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceeeeeeeecCC
Q 001403 855 MDDSTILIYNARSS--------E---VISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 922 (1084)
Q Consensus 855 ~~dg~i~iwd~~~~--------~---~~~~l~~h~~~V~~l~~spd-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~ 922 (1084)
+.|+.|+|||+.++ + .+..+.+|...|.+++|+|+ +.+|++++.||+|++||+.++.. +....
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-----~~~~~ 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-----VCATL 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-----EEEEE
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-----eeecc
Confidence 89999999999765 2 24566789999999999998 89999999999999999998632 11222
Q ss_pred CCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeec------CCCCCEEEEEEccCCCEEEEEe-CCC--
Q 001403 923 GVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTSF-VDG-- 992 (1084)
Q Consensus 923 ~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~t~~-~dg-- 992 (1084)
+|.. .|.+++|+|+|++|+++ .|++|++||++ ++....+.. .|...|.+++|++++.++++.+ .||
T Consensus 190 ~~~~---~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 190 PSTV---AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp CGGG---CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred CCCC---ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 3433 79999999999999995 78999999998 554443221 2334899999999998876533 443
Q ss_pred ----cEEEEEcCCCce-----eEEeccccccCCCCcccceeeeEEEECCCCCCEEEEE-eCCCcEEEEcCCCCCCCcccC
Q 001403 993 ----TLSIHEASNLEV-----QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG-LTNGEVYVIEPNEPGDTWAVL 1062 (1084)
Q Consensus 993 ----~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~-~~dg~v~vw~~~~~~~~~~~~ 1062 (1084)
.+++|++..... ...+....+-... .+...+.+.+-+ |.++++++ +..+.|.++.....+..|...
T Consensus 266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~l~-dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCT---ERQHHYYLSYIE-EWDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp SSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCS---SSCCCEEEEEEG-GGTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCCCceEEEEeccCCCCCCcceEecccCCCCCCC---CcCcceeeehhc-cCCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 389999986531 1222211111111 111122344445 34555554 445568999887766678766
Q ss_pred CCCCcccCCCCCCcc
Q 001403 1063 PPDEIVGDQPTSTSE 1077 (1084)
Q Consensus 1063 ~~~~~~~~~~~~~~~ 1077 (1084)
...|...+..+-+.+
T Consensus 342 ~~~d~~ra~lP~~~~ 356 (434)
T 2oit_A 342 LLEDSSRAELPVTDK 356 (434)
T ss_dssp EECGGGCCBCCBCTT
T ss_pred eccccccccccCCCC
Confidence 666655555544433
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.3e-18 Score=187.47 Aligned_cols=282 Identities=11% Similarity=0.073 Sum_probs=193.7
Q ss_pred EEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE-eCCCEEEEEEc
Q 001403 339 SMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAY 417 (1084)
Q Consensus 339 ~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~-~~dg~v~iwd~ 417 (1084)
.+++++++++++++..+ ++|.+||..++....... .+....+..++|+|||++++++ ..++.|.+||+
T Consensus 4 g~~~~~~~~~~v~~~~~---------~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~ 72 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYP---------NNLHVVDVASDTVYKSCV--MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL 72 (349)
T ss_dssp CCCCCTTCEEEEEEETT---------TEEEEEETTTTEEEEEEE--CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred cccccCCCEEEEEeCCC---------CeEEEEECCCCcEEEEEe--cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeC
Confidence 46789999999998766 999999998876543321 1222367899999999976544 56899999999
Q ss_pred cCCccccceeeee-cc-----cccEeEEEeecCCCcEEEEEEeCC------------CcEEEEECCCCcee---eEeccC
Q 001403 418 HGGSDARQQLEID-AH-----VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSRT---YSFEGH 476 (1084)
Q Consensus 418 ~~~~~~~~~~~l~-~h-----~~~V~~l~~s~d~~~l~l~s~~~d------------~~i~vwd~~~g~~~---~~~~~h 476 (1084)
.+++... .+. .+ ...+.+++|+|||+ ++++++.+ +.|.+||+.+++.. ..+. +
T Consensus 73 ~t~~~~~---~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~ 146 (349)
T 1jmx_B 73 DTCKNTF---HANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-M 146 (349)
T ss_dssp TTTEEEE---EEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-C
T ss_pred CCCcEEE---EEEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-C
Confidence 9987554 222 22 33478999999999 66666654 89999999985543 3343 3
Q ss_pred CCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCC---------------------C---eEEEEEEcCC
Q 001403 477 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------------------L---GCTRMAYSAN 532 (1084)
Q Consensus 477 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------------------~---~i~~~~~s~d 532 (1084)
...+.+++|++ +++ +++++ +.|.+||..+++....+.... . ....++++++
T Consensus 147 ~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 221 (349)
T 1jmx_B 147 PRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD 221 (349)
T ss_dssp CSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--
T ss_pred CCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCC
Confidence 34577788854 666 55544 349999998887665554331 0 3345667666
Q ss_pred CCEEEEEeeCCCCCeeEEEecCCCceEeee-eeccccccCceEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEEcC
Q 001403 533 GRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDA 610 (1084)
Q Consensus 533 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 610 (1084)
+........ +...+..+|..+++.... +... ...+..++|+| ++++++++ ++.|.+||+.+++.+..+..
T Consensus 222 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~ 293 (349)
T 1jmx_B 222 DKQDPATAD---LLYGYLSVDLKTGKTHTQEFADL---TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL 293 (349)
T ss_dssp -----CCCE---EEEEEEEEETTTCCEEEEEEEEC---SSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC
T ss_pred CcCCccccc---cceeEEEEeccCCcEEecccccC---CCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC
Confidence 533211110 011233356665543211 1112 25688999999 99999988 88999999999999888865
Q ss_pred CCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeecc
Q 001403 611 GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 653 (1084)
Q Consensus 611 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 653 (1084)
.. .+..++|+|++++|++++.++.|.+||..+++.+..+.
T Consensus 294 ~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 294 DH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp SS---CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CC---CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 43 36789999999999888889999999999887776654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.5e-18 Score=192.08 Aligned_cols=307 Identities=11% Similarity=0.019 Sum_probs=202.9
Q ss_pred EEEcCCccccceeeeecCCCCCeEE-----EEEcCCCCEEEEEeC-CC--EEEEEEccCCccccceeeeecccccEeEEE
Q 001403 369 VWDIGACSMLFKTALVRDPGVSVNR-----VVWSPDGSLLGVAYS-KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLA 440 (1084)
Q Consensus 369 iwd~~~~~~~~~~~~~~~h~~~V~~-----v~fspdg~~las~~~-dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~ 440 (1084)
.+|..++....+ +..|...+.. .+|||||++||+++. ++ .|.+||+.+++... ...++...+..++
T Consensus 14 ~~~~~~g~~~~~---lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~ 87 (388)
T 3pe7_A 14 YQDASTGAQVTR---LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGF 87 (388)
T ss_dssp EECTTTCCEEEE---CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCE
T ss_pred EecCCCCcceEE---ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceE
Confidence 344444443322 5556655655 899999999999987 66 48888998886543 3345655666788
Q ss_pred eecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEe----------------------
Q 001403 441 FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---------------------- 498 (1084)
Q Consensus 441 ~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---------------------- 498 (1084)
|+|||+ .|+.++.++.|.+||+.+++....+..+...+....+..++++.+++...
T Consensus 88 ~spdg~--~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 88 LSPDDD--ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp ECTTSS--EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred EcCCCC--EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 999999 78888888999999999998877777676666555554466777777432
Q ss_pred cCCeEEEEECCCCCceEeecCCCCeEEEEEEcC-CCCEEEEEeeCCC--CCeeEEEecCCCceEeeeeeccccccCceEE
Q 001403 499 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQHNSVSV 575 (1084)
Q Consensus 499 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~ 575 (1084)
.++.|.+||+.+++.... ..+...+..++|+| ||+.|+.+..... ....|+++|..+++......... ...+..
T Consensus 166 ~~~~l~~~d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~ 242 (388)
T 3pe7_A 166 PCCRLMRVDLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE--GESCTH 242 (388)
T ss_dssp CCEEEEEEETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT--TEEEEE
T ss_pred CcceEEEEECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC--Cccccc
Confidence 346799999988764433 34455688999999 9999988775321 14468889987665443333221 124778
Q ss_pred EEEcCCCCEEEEEEC-CC----cEEEEECCCCeEEEEEcCCCC--C-CCcceEEEecCCCEEEEE---------ECCCeE
Q 001403 576 VHFDTAKDQILAAGD-DH----VIKIWDMNKVQLLTTIDAGGG--L-PENPRICFNKNGTLLAVI---------ANENRI 638 (1084)
Q Consensus 576 ~~~s~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~--~-~~v~~v~~s~~~~~l~~~---------~~dg~i 638 (1084)
++|+|||+.|+..+. ++ .|++||+.+++.......... . ......+|+|||+.|+.. ..+..|
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i 322 (388)
T 3pe7_A 243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFL 322 (388)
T ss_dssp EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEE
T ss_pred ceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEE
Confidence 899999998866442 22 399999999875443322210 0 012334799999988864 446689
Q ss_pred EEEEcCCCCeeeecccccc-----------ceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceec-ccCcccccc
Q 001403 639 KILETPESNSVDAAGVLSD-----------NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE-AENKSEVEK 706 (1084)
Q Consensus 639 ~iwd~~~~~~~~~~~~~~~-----------~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~d~~i~~w~ 706 (1084)
++||+.+++. ..+..+.. .+..++|+ |||+.++..+ .++...+|.
T Consensus 323 ~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s----------------------pDg~~l~~~s~~~g~~~l~~ 379 (388)
T 3pe7_A 323 YVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFT----------------------PDDKQILFTSDVHGKPALYL 379 (388)
T ss_dssp EEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEEC----------------------TTSSEEEEEECTTSSCEEEE
T ss_pred EEEeccCCce-EEeccccCcccccccccccCCCCccCC----------------------CCCCEEEEEecCCCceeEEE
Confidence 9999988754 33333332 23444444 6776665444 466777776
Q ss_pred cee
Q 001403 707 PLF 709 (1084)
Q Consensus 707 ~~~ 709 (1084)
+..
T Consensus 380 ~~l 382 (388)
T 3pe7_A 380 ATL 382 (388)
T ss_dssp EEC
T ss_pred EEC
Confidence 653
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-17 Score=185.09 Aligned_cols=249 Identities=9% Similarity=0.102 Sum_probs=170.1
Q ss_pred CCccEEEecCCCCEEEEEeCCeEEEEEcC-CceeEEEEcC-CCCCeEEEEEcCCCCc--EEEEEe-------------CC
Q 001403 795 EAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP-PSPTATSLAFNPHDNN--VIAIGM-------------DD 857 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~sdg~i~vwd~~-~~~~~~~~~~-~~~~i~~l~~s~~d~~--~la~g~-------------~d 857 (1084)
..+..++++|||++|++++.+.|.+|++. +++....... ..+.+.+++|+| +++ ++++++ .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 46788999999999988885599999997 7776543321 112356689999 788 455553 68
Q ss_pred CeEEEEEcC-Cceeeeeec----ccccCEEEEEEcCCCCEEEEEeC-CCcEEEEeCC-CCceeeeeeeecCCCCccCCCC
Q 001403 858 STILIYNAR-SSEVISKLE----GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPS 930 (1084)
Q Consensus 858 g~i~iwd~~-~~~~~~~l~----~h~~~V~~l~~spd~~~l~s~s~-dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 930 (1084)
|.+.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|++||+. +++......+.... +. ..
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~g---~~ 194 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-PG---DH 194 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-TT---CC
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-CC---CC
Confidence 999999997 466544443 24567999999999998887764 6799999998 66643322222111 11 25
Q ss_pred ceEEEEccCCCEEEEEe--CCeEEEEEcC--Ccceee---Ee--ec----CCCC------CEEEEE-EccCCCEEEEEeC
Q 001403 931 ETHIQFHKDQTRFLLVH--ETHLAIYEAE--ELTCLK---QW--FP----ISSV------PISQAT-FSCDCRMVFTSFV 990 (1084)
Q Consensus 931 v~~~~~s~dg~~la~~~--d~~i~vwd~~--~~~~~~---~~--~~----~h~~------~v~~l~-fs~dg~~l~t~~~ 990 (1084)
+..++|+|||++|+++. ++.|.+|++. +|+... .+ .. +|.. .+..++ |||||++|+++..
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 78999999999998853 5789999865 565421 11 11 1222 588999 9999999987764
Q ss_pred CC------cEEEEEcC-CCceeEEeccccccCCCCcccceeeeEEEECCC--CCCEEEEEeCC-CcEEEEcCCCC
Q 001403 991 DG------TLSIHEAS-NLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTN-GEVYVIEPNEP 1055 (1084)
Q Consensus 991 dg------~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~--d~~~l~~~~~d-g~v~vw~~~~~ 1055 (1084)
+. .|.+|++. +|++............ .+..++|+|. ||++|++++.+ +.|.+|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~-------~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS-------GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC-------CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC-------CcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 33 89999996 6665432110000111 1223678884 48899988865 89999998543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-16 Score=178.36 Aligned_cols=224 Identities=10% Similarity=0.064 Sum_probs=156.9
Q ss_pred CCccEEEecCCCCEEEEEe---CCeEEEEEcCCceeEEE-EcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ce
Q 001403 795 EAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SE 869 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~-~~ 869 (1084)
.....++++|||++|++++ +++|.+||+.+++.+.+ +... ....+.+.|++...+++.+.||.+.+|++.. ++
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~ 185 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK 185 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSS
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCc
Confidence 3456789999999998875 47899999999998887 5532 2233567784557888899999999999865 55
Q ss_pred eee------eecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCC---Ccc-CCCCceEEEEccC
Q 001403 870 VIS------KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG---VMT-LAPSETHIQFHKD 939 (1084)
Q Consensus 870 ~~~------~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~---~~~-~~~~v~~~~~s~d 939 (1084)
... .+..+..++ .+.+++++..++..+.++.|.++|+..+............. ... .......++|+||
T Consensus 186 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d 264 (361)
T 2oiz_A 186 VASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA 264 (361)
T ss_dssp EEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred EeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence 441 222222322 34557888888888899999999998654322221111110 000 0012234799999
Q ss_pred CCEEEEE-e-----------CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC--cee
Q 001403 940 QTRFLLV-H-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL--EVQ 1005 (1084)
Q Consensus 940 g~~la~~-~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~--~~~ 1005 (1084)
++.+.++ . .+.|.+||+.+++.+..+..+ . +.+++|+|||++|++++. ++|.+||+.++ +.+
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~-~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~ 340 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR-D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLL 340 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT-T--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC-C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceee
Confidence 9988874 3 247999999999998886543 3 899999999999998886 99999999999 888
Q ss_pred EEeccccccCCCCcccceeeeEEEECCCCCC
Q 001403 1006 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1036 (1084)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~ 1036 (1084)
.++... .-.|..++++|+ |.
T Consensus 341 ~~i~~~----------G~~P~~~~~~p~-G~ 360 (361)
T 2oiz_A 341 RTIEGA----------AEASLQVQFHPV-GG 360 (361)
T ss_dssp EEETTS----------CSSEEEEEECCC-SC
T ss_pred EEeccC----------CCCcEEEEecCC-CC
Confidence 776411 124567889994 53
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-16 Score=179.52 Aligned_cols=250 Identities=9% Similarity=0.061 Sum_probs=173.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEcc-CCccccceeeeecccccEeEEEeecCCCcEEEEEEe-----------
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG----------- 454 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~-~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~----------- 454 (1084)
+...+..++|+|||++|++++.+ .|.+|++. +++.... .....+ +.+.+++|+|||+.+++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~-~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHE-ASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEE-EEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEe-eEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 34578899999999999999888 89999997 7654321 111111 235678999999853455553
Q ss_pred --CCCcEEEEECC-CCceeeEec----cCCCcEEEEeecccCCCcEEEEEec-CCeEEEEECC-CCCceE--eec--CCC
Q 001403 455 --DDKTIKVWDAV-TGSRTYSFE----GHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD-SLGARV--DYD--APG 521 (1084)
Q Consensus 455 --~d~~i~vwd~~-~g~~~~~~~----~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~-~~~~~~--~~~--~~~ 521 (1084)
.++++.+|++. +|+....+. .+...+.+++|+| +|+++++++. ++.|++|+++ +++... .+. .+.
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 68999999997 566554443 2556788999954 7777777654 6899999998 555432 232 235
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCC--CceEee---eeecccc----ccC------ceEEEE-EcCCCCEE
Q 001403 522 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIKR---TYQGLQL----QHN------SVSVVH-FDTAKDQI 585 (1084)
Q Consensus 522 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~--~~~~~~---~~~~~~~----~~~------~v~~~~-~s~~~~~l 585 (1084)
..+..++|+|||++++++.. .++.|.+|+.. +++... .+..... +.. .+..++ |+|||++|
T Consensus 193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 67899999999999988753 24568887654 565432 2221110 011 478899 99999998
Q ss_pred EEEECC-C-----cEEEEECC-CCeEEEE---EcCCCCCCCcceEEEec---CCCEEEEEECC-CeEEEEEcCCC
Q 001403 586 LAAGDD-H-----VIKIWDMN-KVQLLTT---IDAGGGLPENPRICFNK---NGTLLAVIANE-NRIKILETPES 646 (1084)
Q Consensus 586 ~~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~s~---~~~~l~~~~~d-g~i~iwd~~~~ 646 (1084)
+++..+ + .|.+|++. +++.... ..... .....++|+| ||++|+++..+ +.|.+|++...
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 876543 2 89999996 6765542 22222 2356889999 89999998864 89999998765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-16 Score=172.47 Aligned_cols=313 Identities=10% Similarity=0.099 Sum_probs=211.5
Q ss_pred CCcEEEEEe------cCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEee------CCCCCeeEEEecCCCc
Q 001403 490 NIHFIFSIS------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT------SKEGESFLVEWNESEG 557 (1084)
Q Consensus 490 ~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~------~~~~~~~i~~wd~~~~ 557 (1084)
++.+++... .|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 445565553 4789999999888877666655444 8999999999998863 1223567999999999
Q ss_pred eEeeeeecccc---ccCceEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeEEEE-EcCCCCCCCcceEEEecCC-CEEE
Q 001403 558 AIKRTYQGLQL---QHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTT-IDAGGGLPENPRICFNKNG-TLLA 630 (1084)
Q Consensus 558 ~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~-~~l~ 630 (1084)
+.+..+..... +......++++|||++++++.. ++.|.+||+.+++.+.. +...+ ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 98887764310 1234667899999999999863 68999999999998887 65322 2335677765 6778
Q ss_pred EEECCCeEEEEEcCC-CCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcccccccee
Q 001403 631 VIANENRIKILETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 709 (1084)
Q Consensus 631 ~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~ 709 (1084)
+.+.||.+.+|+... ++...... ...+|+...
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~-----------------------------------------------~~~~~~~~~ 200 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSR-----------------------------------------------SKQMFSVKD 200 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEE-----------------------------------------------CCCCSCTTT
T ss_pred EECCCCcEEEEEECCCCcEeeecc-----------------------------------------------ccceEcCCC
Confidence 888999999998764 32221100 001111100
Q ss_pred ecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCc
Q 001403 710 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 789 (1084)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1084)
.. ..+.+++++..++..+.++.+.++++....... +..|+......... ..
T Consensus 201 -----------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---------~~~~~~~~~~~~~~-~~- 251 (361)
T 2oiz_A 201 -----------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---------DGPWSLLNDEDKAK-NW- 251 (361)
T ss_dssp -----------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE---------EEEEESCCHHHHHT-TC-
T ss_pred -----------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee---------cccccccCcccccc-cc-
Confidence 00 011224555556666667777777764322100 01121111000000 00
Q ss_pred CCCCCCCccEEEecCCCCEEEEEe------------CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCC
Q 001403 790 DSNSQEAVPCFALSKNDAYLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 857 (1084)
Q Consensus 790 ~~~~~~~v~~l~~s~dg~~l~~~s------------dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d 857 (1084)
.......++|+||++.+.++. .+.|.+||+.+++.+.++..+. +.+++|+| |+++|++++.
T Consensus 252 ---~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~- 324 (361)
T 2oiz_A 252 ---VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG- 324 (361)
T ss_dssp ---EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-
T ss_pred ---ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-
Confidence 011223478999988877653 2479999999999999998776 99999999 8889998887
Q ss_pred CeEEEEEcCCc--eeeeeecccccCEEEEEEcCCCC
Q 001403 858 STILIYNARSS--EVISKLEGHSKRVTGLVFSDALN 891 (1084)
Q Consensus 858 g~i~iwd~~~~--~~~~~l~~h~~~V~~l~~spd~~ 891 (1084)
++|.+||..++ +.+.++..+......++++|||+
T Consensus 325 ~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999999 99999877778889999999986
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.76 E-value=9e-17 Score=182.61 Aligned_cols=301 Identities=11% Similarity=0.002 Sum_probs=194.5
Q ss_pred cceeeecccCCCC-----ceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC
Q 001403 324 KTVAQTLIEGSSS-----PMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 398 (1084)
Q Consensus 324 ~~~~~~l~~h~~~-----V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp 398 (1084)
...++.|..+... +..++|||||++||+...+ .| ...|.+||+.++.... +..++......+.|||
T Consensus 20 g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~--~g----~~~l~~~d~~~~~~~~---l~~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 20 QVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDF--DG----NRNYYLLNLETQQAVQ---LTEGKGDNTFGGFIST 90 (396)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT--TS----SCEEEEEETTTTEEEE---CCCSSCBCTTTCEECT
T ss_pred CcceEEEecCCCCccceeeecCcCCCCCCEEEEEEec--CC----CceEEEEECCCCcEEE---eecCCCCccccceECC
Confidence 3344555555333 7889999999999886432 12 1578889988765321 1222332333488999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeE-------------------EEeecCCCcEEEEEE-----e
Q 001403 399 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-------------------LAFSAPCKQISVITC-----G 454 (1084)
Q Consensus 399 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~-------------------l~~s~d~~~l~l~s~-----~ 454 (1084)
||++|++++.++.|.+||+.+++... ....+...... ++|+|+++. ++.. .
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~ 165 (396)
T 3c5m_A 91 DERAFFYVKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTN 165 (396)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTC
T ss_pred CCCEEEEEEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCC
Confidence 99999999999999999999886432 22223322222 356788873 3332 4
Q ss_pred CCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecC------CeEEEEECCCCCceEeecCC-CCeEEEE
Q 001403 455 DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAP-GLGCTRM 527 (1084)
Q Consensus 455 ~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~-~~~i~~~ 527 (1084)
.+..|.+||+.+++..... .+...+..+.|+|. ++..|+..+.+ ..|.+|+++........... ...+..+
T Consensus 166 ~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHE 243 (396)
T ss_dssp CCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEE
T ss_pred CcceEEEEECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccce
Confidence 5678999999988765444 46777888888652 45566665543 35888888765443333322 3368889
Q ss_pred EEcCCCCEEEEEeeCCC-CCeeEEEecCCCceEeeeeeccccccCceEEEEEcC-CCCEEEEEE----------------
Q 001403 528 AYSANGRRLFSCGTSKE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAG---------------- 589 (1084)
Q Consensus 528 ~~s~d~~~l~~~~~~~~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~---------------- 589 (1084)
+|+|||+.|+.++.... ..+.|++||+.+++........ ... +.|+| +++.+++++
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~ 317 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIE 317 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-----SEE-EEEECSSSSEEEEEECCC----------CCC
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-----CCC-CCccCCCCceEEEecCCcceeeccccccccC
Confidence 99999998887764321 1245999999988765433221 123 88999 999888755
Q ss_pred CCCcEEEEECCCCeEEEEEcCCCCC--------CCcceEEEecCCCEEEEEEC-CCeEEEE--EcCCC
Q 001403 590 DDHVIKIWDMNKVQLLTTIDAGGGL--------PENPRICFNKNGTLLAVIAN-ENRIKIL--ETPES 646 (1084)
Q Consensus 590 ~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~~~~l~~~~~-dg~i~iw--d~~~~ 646 (1084)
.++.|++||+.+++........... ..+..++|+|||+.|+.++. ++...+| ++.++
T Consensus 318 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 318 NDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp CCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred CCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 3478999999888754333222110 01456889999999888775 4544444 44444
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.3e-15 Score=171.29 Aligned_cols=329 Identities=11% Similarity=0.100 Sum_probs=224.1
Q ss_pred CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECC--CCeEEEEEcCCCCCCCcceEEEe
Q 001403 546 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN--KVQLLTTIDAGGGLPENPRICFN 623 (1084)
Q Consensus 546 ~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s 623 (1084)
++.|.++|..+++.+..+.... .+..+.|+||++++++++.|+.|.+||+. +++.+..+..... ...++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g~----~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~---P~~ia~s 248 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTGY----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE---ARSIETS 248 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECSS----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE---EEEEEEC
T ss_pred CCeEEEEECCCCeEEEEEeCCC----CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC---CceeEEc
Confidence 6779999999999998887543 56789999999999999999999999996 8888888775433 4789999
Q ss_pred ----cCCCEEEEEEC-CCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecc
Q 001403 624 ----KNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 698 (1084)
Q Consensus 624 ----~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 698 (1084)
|||++++++.. ++.+.++|..+.+.+..+......+ ++.
T Consensus 249 ~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~-----------------------------~~~------- 292 (567)
T 1qks_A 249 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY-----------------------------DEQ------- 292 (567)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT-----------------------------TTC-------
T ss_pred cccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccc-----------------------------ccc-------
Confidence 69998887765 5999999988877765543110000 000
Q ss_pred cCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEe-ecCCceEEeeccCCccCcCcccceecCCeeecC
Q 001403 699 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 777 (1084)
Q Consensus 699 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1084)
.. .....+..+.+++++..++.. ...|.|.++|+..... +.+..
T Consensus 293 -------~~----------------~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~-----------~~v~~- 337 (567)
T 1qks_A 293 -------EY----------------HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-----------LKTTE- 337 (567)
T ss_dssp -------CE----------------ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-----------EEEEE-
T ss_pred -------cc----------------cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc-----------ceeee-
Confidence 00 011245667777776655444 4457888777643210 00110
Q ss_pred CCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--CCeEEEEEcCCceeEEEEcC-----CCCCeEEEEEcCCCCcE
Q 001403 778 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNV 850 (1084)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~ 850 (1084)
+ .......++.|+|+|+++++++ +++|.++|+.+++.+..+.. |.+.-..+ ++|+.+.+
T Consensus 338 ----------i---~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v 403 (567)
T 1qks_A 338 ----------I---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPV 403 (567)
T ss_dssp ----------E---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEE
T ss_pred ----------e---eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcE
Confidence 0 1233456789999999998876 58999999999998877654 22212222 67833666
Q ss_pred EEEEe-CCCeEEEEEcCC-------ceeeeeecccccCEEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCce---
Q 001403 851 IAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGI--- 912 (1084)
Q Consensus 851 la~g~-~dg~i~iwd~~~-------~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~-------dg~I~iwd~~~~~~--- 912 (1084)
++++. .+++|.++|..+ .+.+.++......-..+.++||+++|..... ..+|.++|+.+.+.
T Consensus 404 ~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~ 483 (567)
T 1qks_A 404 WATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGS 483 (567)
T ss_dssp EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSS
T ss_pred EEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccccc
Confidence 66654 568999999988 5677777755443345788999999987663 35899999987511
Q ss_pred -eeeeeeecC--CCCccCCCCceEEEEccCCCEEEEE-e-----CCeEEEEEcCCcceeeEee
Q 001403 913 -QTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLV-H-----ETHLAIYEAEELTCLKQWF 966 (1084)
Q Consensus 913 -~~~~~~~~~--~~~~~~~~~v~~~~~s~dg~~la~~-~-----d~~i~vwd~~~~~~~~~~~ 966 (1084)
.....+... .+.......+..+.|+|||+++.++ . ++.|.|+|..+++.+..+.
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 484 DPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp CCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 111222210 0000001258899999999998875 2 6889999999999877644
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-15 Score=168.15 Aligned_cols=270 Identities=9% Similarity=0.097 Sum_probs=182.2
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC---C--
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---H-- 410 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d---g-- 410 (1084)
.+..+++ ||+++|................|.+||+.++... . + ..+..++|||||++||.++.+ +
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~---~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR---F-I----ENATMPRISPDGKKIAFMRANEEKKVS 85 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE---E-E----ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE---E-c----ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence 5677888 9999998543221111112378999999876532 1 2 468899999999999988754 3
Q ss_pred EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC---------------------------CCcEEEEE
Q 001403 411 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD---------------------------DKTIKVWD 463 (1084)
Q Consensus 411 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~---------------------------d~~i~vwd 463 (1084)
.|.+||+.+++... +..+.. +..++|+|||+ .|+.++. ...|.+||
T Consensus 86 ~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d 158 (347)
T 2gop_A 86 EIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFD 158 (347)
T ss_dssp EEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC---------CEEEEEEEE
T ss_pred eEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEE
Confidence 47888888875432 333344 99999999999 4555442 25799999
Q ss_pred CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCC-------eEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEE
Q 001403 464 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG-------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 536 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-------~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l 536 (1084)
+.+++.+..+.. . .+..++|+ ++| +++++..++ ...+|.++ ......+..+ ..+..+ +|||+.|
T Consensus 159 ~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~-~~~~~~--spdg~~l 229 (347)
T 2gop_A 159 TESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK-VSFYAV--DSDGERI 229 (347)
T ss_dssp TTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEEE-ESEEEE--EECSSCE
T ss_pred CCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC-CCceEEeccC-cceeeE--CCCCCEE
Confidence 999887555554 3 67788885 467 777776542 44556555 3333333333 344443 9999999
Q ss_pred EEEeeCCC----CCeeEEEecCCCceEeeeeeccccccCceEE-EEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC
Q 001403 537 FSCGTSKE----GESFLVEWNESEGAIKRTYQGLQLQHNSVSV-VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 611 (1084)
Q Consensus 537 ~~~~~~~~----~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 611 (1084)
+.++.... ....|++|| +++.......+. ..+.. +.|+ ++ .+++++.++.+++| +.+++.......
T Consensus 230 ~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~---~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~- 300 (347)
T 2gop_A 230 LLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD---RGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKG- 300 (347)
T ss_dssp EEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC---SEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECS-
T ss_pred EEEEccccCCccccceEEEEC--CCceEeccccCC---cccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecC-
Confidence 88775331 235799999 666555444444 56775 8999 88 88889999999999 877766554433
Q ss_pred CCCCCcceEEEecCCCEEEEEECCCeE-EEEEcC
Q 001403 612 GGLPENPRICFNKNGTLLAVIANENRI-KILETP 644 (1084)
Q Consensus 612 ~~~~~v~~v~~s~~~~~l~~~~~dg~i-~iwd~~ 644 (1084)
...+.+++|+| .++++++.++.. .+|...
T Consensus 301 --~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 301 --RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp --SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred --CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 23478899999 677777766654 777665
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-15 Score=184.31 Aligned_cols=295 Identities=10% Similarity=-0.028 Sum_probs=196.1
Q ss_pred eecccCCCCceEEEEcCCCceeeee--cccccCccccccceEEEEEcCCccccceeeeecCCCCCeE---------EEEE
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLG--LWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN---------RVVW 396 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~--~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~---------~v~f 396 (1084)
..+.+|...|..++||+++.++++. ..+ +...||......... .+..|...+. ..+|
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~ 84 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEA---------GRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAG 84 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTT---------TEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccC---------CcEEEEEECCCCCcc---eeCCCCccccccccccCCcccee
Confidence 4567899999999999998777775 223 678899864333221 2455655665 5666
Q ss_pred c--CCCCE-EEEEeC-CCEEEEEEcc--C-Cccccceeeeec-----ccccEeEEEeecCCCcEEEEEEeCC--------
Q 001403 397 S--PDGSL-LGVAYS-KHIVQLYAYH--G-GSDARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCGDD-------- 456 (1084)
Q Consensus 397 s--pdg~~-las~~~-dg~v~iwd~~--~-~~~~~~~~~l~~-----h~~~V~~l~~s~d~~~l~l~s~~~d-------- 456 (1084)
+ |||++ ||.++. +..|.+|++. + ++ .+ .+.. |...+.+++|||||+ .|++++.+
T Consensus 85 ~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~~~~ 158 (662)
T 3azo_A 85 VPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGEGPSD 158 (662)
T ss_dssp ECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSSSTTC
T ss_pred eeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccCCCCCC
Confidence 5 99999 887654 4556666665 3 43 22 3444 677899999999999 67776665
Q ss_pred --CcEEEEECCC------CceeeEec-cCCCcEEEEeecccCCCcEEEEEecCC--------eEEEEECC-CC---CceE
Q 001403 457 --KTIKVWDAVT------GSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDG--------KIKAWLYD-SL---GARV 515 (1084)
Q Consensus 457 --~~i~vwd~~~------g~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg--------~i~iwd~~-~~---~~~~ 515 (1084)
..|.+||+.+ +. ...+. .+...+..++| ++||++|+.++.++ .|++||++ ++ ....
T Consensus 159 ~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~ 235 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT 235 (662)
T ss_dssp EEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEE
T ss_pred ceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEE
Confidence 5899999988 54 44555 66677777888 45788998887553 79999998 45 2333
Q ss_pred eecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccC-----ceEEEEEcCCCCEEEEEEC
Q 001403 516 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN-----SVSVVHFDTAKDQILAAGD 590 (1084)
Q Consensus 516 ~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~ 590 (1084)
....+...+..++|+|||++++++.. ++...|++||+.+++.......+..... .+..++|+|++..+++++.
T Consensus 236 l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~ 313 (662)
T 3azo_A 236 LLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK 313 (662)
T ss_dssp EEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS
T ss_pred eCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc
Confidence 33344668899999999995555432 3344789999878876555443331000 1467889999999999988
Q ss_pred CCcEEEE--ECCCCeEEEEEcCCCCCCCcceEEEecCCCE--EEEEECCC--eEEEEEcCCCCeee
Q 001403 591 DHVIKIW--DMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANEN--RIKILETPESNSVD 650 (1084)
Q Consensus 591 dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg--~i~iwd~~~~~~~~ 650 (1084)
+.+++| |..+++ +..+..+.. .+..+ +++++.. ++.++.+. .|.++++.+++...
T Consensus 314 -~~~~l~~~d~~~~~-~~~l~~~~~--~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 314 -GAAVLGILDPESGE-LVDAAGPWT--EWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRART 374 (662)
T ss_dssp -SSCEEEEEETTTTE-EEECCSSCC--EEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred -CccEEEEEECCCCc-EEEecCCCC--eEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence 999999 666665 555554422 34555 1444443 34444454 45556666665433
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.5e-14 Score=163.90 Aligned_cols=325 Identities=13% Similarity=0.148 Sum_probs=221.1
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC--CCCeeeecccccc
Q 001403 580 TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSD 657 (1084)
Q Consensus 580 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~ 657 (1084)
|.+..+++...++.|.++|..+++.+..+.... .+..++|+|||+++++++.++.|.+||+. +.+.+..+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~---- 237 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK---- 237 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe----
Confidence 444566667789999999999999999887543 25689999999999999999999999985 444332221
Q ss_pred ceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEe--
Q 001403 658 NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-- 735 (1084)
Q Consensus 658 ~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-- 735 (1084)
.......++|+
T Consensus 238 -------------------------------------------------------------------~G~~P~~ia~s~~ 250 (567)
T 1qks_A 238 -------------------------------------------------------------------IGSEARSIETSKM 250 (567)
T ss_dssp -------------------------------------------------------------------CCSEEEEEEECCS
T ss_pred -------------------------------------------------------------------cCCCCceeEEccc
Confidence 01234578899
Q ss_pred --cCCCeEEEeec-CCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCC------CC-CCCccEEEecCC
Q 001403 736 --NGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS------NS-QEAVPCFALSKN 805 (1084)
Q Consensus 736 --~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~v~~l~~s~d 805 (1084)
|||++++++.. ++.+.++|....+ .+......+. .| ...+..+..+++
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~t~~----------------------~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~ 308 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGETLE----------------------PKKIQSTRGMTYDEQEYHPEPRVAAILASHY 308 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTCC----------------------EEEEEECCEECTTTCCEESCCCEEEEEECSS
T ss_pred cCCCCCEEEEEEccCCeEEEEECCCCc----------------------EEEEEeccccccccccccCCCceEEEEEcCC
Confidence 69998887766 4788887744322 1111111000 01 236778899998
Q ss_pred CCEEEEEe--CCeEEEEEcCCceeE--EEEcCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEEcCCceeeeeecc----
Q 001403 806 DAYLFSAS--GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG---- 876 (1084)
Q Consensus 806 g~~l~~~s--dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~i~iwd~~~~~~~~~l~~---- 876 (1084)
+..++... .|.|.++|..+.+.. ..+. .......+.|+| ++++++++. .++.|.++|+.+++.+..+.-
T Consensus 309 ~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~ 386 (567)
T 1qks_A 309 RPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 386 (567)
T ss_dssp SSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred CCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC
Confidence 87666554 599999999865432 2222 344577889999 788776655 678999999999988766543
Q ss_pred -cccCEEEEEEcCCCCEE-EEEe-CCCcEEEEeCCCCc-----eeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEe-
Q 001403 877 -HSKRVTGLVFSDALNIL-VSSG-GDAQIFVWDVDGWG-----IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH- 947 (1084)
Q Consensus 877 -h~~~V~~l~~spd~~~l-~s~s-~dg~I~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~- 947 (1084)
|.+.-..+ ++|++..+ +++. .+++|.++|..+++ .+....+....+ .-..+.++||++++.+..
T Consensus 387 Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~------g~~~i~~~p~~~~l~v~~~ 459 (567)
T 1qks_A 387 PHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG------GSLFIKTHPNSQYLYVDAT 459 (567)
T ss_dssp BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS------CCCCEECCTTCSEEEEECT
T ss_pred CCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC------CCEEEEeCCCCCeEEEecC
Confidence 43322222 67875544 4443 46899999998732 111122222211 224578899999999854
Q ss_pred -------CCeEEEEEcCCc-----cee-eEee-------cCCCCCEEEEEEccCCCEEEEEe-----CCCcEEEEEcCCC
Q 001403 948 -------ETHLAIYEAEEL-----TCL-KQWF-------PISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNL 1002 (1084)
Q Consensus 948 -------d~~i~vwd~~~~-----~~~-~~~~-------~~h~~~v~~l~fs~dg~~l~t~~-----~dg~i~vwd~~~~ 1002 (1084)
.++|.++|+.+. ... ..+. ..-...+..+.|++||+++.++. .++.|.|+|..++
T Consensus 460 ~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 460 LNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp TCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 358999999877 211 2211 01245789999999999988763 3799999999999
Q ss_pred ceeEEec
Q 001403 1003 EVQCRIL 1009 (1084)
Q Consensus 1003 ~~~~~~~ 1009 (1084)
+++.++.
T Consensus 540 ~~~~~i~ 546 (567)
T 1qks_A 540 ELKHVIK 546 (567)
T ss_dssp EEEEEEC
T ss_pred eEEEEeC
Confidence 9998877
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-16 Score=175.59 Aligned_cols=244 Identities=9% Similarity=-0.010 Sum_probs=166.1
Q ss_pred eEEEEEcCCCCEEEEEeCC---CEEEEEEccCCccccceeeeeccccc-EeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 391 VNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 391 V~~v~fspdg~~las~~~d---g~v~iwd~~~~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
+.+++|||||++||..... ..|.+||+.+++... +..+... ...+.|+|||+ .|+.++.++.|.+||+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLET 111 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETTT
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECCC
Confidence 7788999999999888653 468899998876432 3333333 33478999999 788888888999999999
Q ss_pred CceeeEeccCCCcEEE---Eee--------------cccCCCcEEEEE-----ecCCeEEEEECCCCCceEeecCCCCeE
Q 001403 467 GSRTYSFEGHGAPVYS---LCP--------------HAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGC 524 (1084)
Q Consensus 467 g~~~~~~~~h~~~v~~---~~~--------------~~~~~~~~l~s~-----s~dg~i~iwd~~~~~~~~~~~~~~~~i 524 (1084)
++.......+...... +++ ..+++++.++.. ..+..|.+||+.+++..... .....+
T Consensus 112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~ 190 (396)
T 3c5m_A 112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWL 190 (396)
T ss_dssp CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCE
T ss_pred CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCccc
Confidence 8876555544443322 111 113344444433 35667999999887654443 345578
Q ss_pred EEEEEcC-CCCEEEEEeeCCCC--CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC-----CcEEE
Q 001403 525 TRMAYSA-NGRRLFSCGTSKEG--ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKI 596 (1084)
Q Consensus 525 ~~~~~s~-d~~~l~~~~~~~~~--~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i 596 (1084)
..+.|+| +++.++.++..... ...|++||+.+++......... ...+..++|+|++++|+.++.+ +.|++
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (396)
T 3c5m_A 191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE--GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK 268 (396)
T ss_dssp EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT--TEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC--CccccceEECCCCCEEEEEecCCCCccceEEE
Confidence 8999999 88888877642210 1469999987765443333111 1357889999999988776543 44999
Q ss_pred EECCCCeEEEEEcCCCCCCCcceEEEec-CCCEEEEEE----------------CCCeEEEEEcCCCCe
Q 001403 597 WDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIA----------------NENRIKILETPESNS 648 (1084)
Q Consensus 597 wd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~----------------~dg~i~iwd~~~~~~ 648 (1084)
||+.+++......... .. +.|+| ||+++++++ .++.|++||..+++.
T Consensus 269 ~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 269 ANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp ECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred EECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 9999887655443221 23 89999 999888765 347899999987753
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-14 Score=160.05 Aligned_cols=248 Identities=12% Similarity=0.080 Sum_probs=181.7
Q ss_pred CCCccEEEecCCCCEEEEEeCC-------------------------eEEEEEcCCceeEEEEc-CCCCCeEEEEEcCCC
Q 001403 794 QEAVPCFALSKNDAYLFSASGG-------------------------VISLYIVMTFKTILTIM-PPSPTATSLAFNPHD 847 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~sdg-------------------------~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~d 847 (1084)
-..+.+++++|+|+++++...+ .|.+||..+++....+. .+-.....++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 4568999999999999887643 69999999999877765 3445789999999 8
Q ss_pred CcEEEEEeCCCeEEEEEcCCce-eeeee---------cccccCEEEEEEcC-CCCEEEEEe-CCCcEEEEeCCCCceeee
Q 001403 848 NNVIAIGMDDSTILIYNARSSE-VISKL---------EGHSKRVTGLVFSD-ALNILVSSG-GDAQIFVWDVDGWGIQTC 915 (1084)
Q Consensus 848 ~~~la~g~~dg~i~iwd~~~~~-~~~~l---------~~h~~~V~~l~~sp-d~~~l~s~s-~dg~I~iwd~~~~~~~~~ 915 (1084)
++++++...++.|++||..... .+..+ .++......++|+| ++.++++.+ .++.|++|+.. +.....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEE
Confidence 8888888889999999986442 44554 34555789999999 888888886 68999999954 332221
Q ss_pred eeeecC-----CCCccCCCCceEEEEccC-CCEEEEE-eCCeEEEEEcCCcceeeEee-cCCCCCEEEEEEcc------C
Q 001403 916 RSLQTP-----DGVMTLAPSETHIQFHKD-QTRFLLV-HETHLAIYEAEELTCLKQWF-PISSVPISQATFSC------D 981 (1084)
Q Consensus 916 ~~~~~~-----~~~~~~~~~v~~~~~s~d-g~~la~~-~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~l~fs~------d 981 (1084)
...... .+.. .....++++|+ |.++++. .++.|++|+..+|+.+..+. ..+...+.+++|+| +
T Consensus 181 ~~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~ 257 (329)
T 3fvz_A 181 WGEESSGSSPRPGQF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN 257 (329)
T ss_dssp ECEECCSSSCCTTEE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEE
T ss_pred eccCCCCCCCCCccc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeC
Confidence 111110 0111 24789999999 5555553 67899999999898887753 23567888999999 3
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 982 CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 982 g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
|+..++...+..|++|++.+|+++..+.... ...-.+..++++| ||..+++...++.|++|++..
T Consensus 258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~-------~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR-------KHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCCCTTCSCCCCEEEEETTTCCEEEEECCSS-------SCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred CCEEeccCCCcEEEEEEcCCCeEEEEEcCCC-------CccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 3333333345589999999999987765211 1112456789999 578888888999999999854
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-14 Score=152.90 Aligned_cols=241 Identities=10% Similarity=0.105 Sum_probs=174.8
Q ss_pred CCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcC------CCCCeEEEEEc-CCCCcEEEEEeC-CCeEEEE
Q 001403 793 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP------PSPTATSLAFN-PHDNNVIAIGMD-DSTILIY 863 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~s-~~d~~~la~g~~-dg~i~iw 863 (1084)
+-..+.+++++++|+++++.. ++.|.+||.. ++....+.. +...+..++++ + +++++++... ++.|++|
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEEEEE
Confidence 456688999999999877765 6899999987 666666642 33568899995 5 7777776644 8899999
Q ss_pred EcCCceeeeeec-ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCE
Q 001403 864 NARSSEVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 942 (1084)
Q Consensus 864 d~~~~~~~~~l~-~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 942 (1084)
| .+++.+..+. .+...+.+++++|+|+++++...++.|.+||... +... .+... ++. ..+..++++++|++
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~--~~~~~-~~~---~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLH--KFGCS-KHL---EFPNGVVVNDKQEI 177 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEE--EEECT-TTC---SSEEEEEECSSSEE
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEE--EeCCC-Ccc---CCcEEEEECCCCCE
Confidence 9 5677766664 3456789999999999888888889999999764 2211 11111 111 25789999999997
Q ss_pred EEEE-eCCeEEEEEcCCcceeeEeec-CCCCCEEEEEEccCCCEEEEEeCCC-cEEEEEcCCCceeEEeccccccCCCCc
Q 001403 943 FLLV-HETHLAIYEAEELTCLKQWFP-ISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTAYLRPTTS 1019 (1084)
Q Consensus 943 la~~-~d~~i~vwd~~~~~~~~~~~~-~h~~~v~~l~fs~dg~~l~t~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1019 (1084)
+++. .++.|++||.. ++.+..+.. ++...+..++++++|+++++...++ .|.+|+. +++.+..+...
T Consensus 178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~-------- 247 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK-------- 247 (286)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES--------
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc--------
Confidence 7774 57899999974 555554332 2236789999999999888887776 9999995 46666555421
Q ss_pred ccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCC
Q 001403 1020 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1055 (1084)
Q Consensus 1020 ~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~ 1055 (1084)
.....+.+++++| ||+++++ +.|+.|++|++...
T Consensus 248 ~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 248 VKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp SCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 1112456788999 5765555 68999999998554
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=9.9e-15 Score=178.03 Aligned_cols=250 Identities=11% Similarity=0.001 Sum_probs=176.6
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEE--eCCCEEEEEEccCCccccceeeeecccccEe---------EEEee--cCCCcEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQQLEIDAHVGNVN---------DLAFS--APCKQISV 450 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~--~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~---------~l~~s--~d~~~l~l 450 (1084)
+.+|...+..++|++++-++++. +.++...||....+...+ .+..|...+. ...|+ |||+.+ |
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~-l 94 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL-L 94 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE-E
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE-E
Confidence 55688999999999887777777 558889999975443333 4556666666 66666 999941 4
Q ss_pred EEEe-CCCcEEEEECC--CCceeeEecc-----CCCcEEEEeecccCCCcEEEEEecC----------CeEEEEECCCC-
Q 001403 451 ITCG-DDKTIKVWDAV--TGSRTYSFEG-----HGAPVYSLCPHAKENIHFIFSISVD----------GKIKAWLYDSL- 511 (1084)
Q Consensus 451 ~s~~-~d~~i~vwd~~--~g~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~d----------g~i~iwd~~~~- 511 (1084)
+.++ .+..|.+|++. ++.....+.. |...+.+++|+| ||+.|++++.+ ..|++||+++.
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 172 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA 172 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET--TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred EEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC--CCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence 4443 35667777765 2034555655 667788899954 77899888877 57999999872
Q ss_pred ----CceEeec-CCCCeEEEEEEcCCCCEEEEEeeCCC----CCeeEEEecCC-Cc---eEeeeeeccccccCceEEEEE
Q 001403 512 ----GARVDYD-APGLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNES-EG---AIKRTYQGLQLQHNSVSVVHF 578 (1084)
Q Consensus 512 ----~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~----~~~~i~~wd~~-~~---~~~~~~~~~~~~~~~v~~~~~ 578 (1084)
.....+. .+...+..++|||||++|+.++.+.. ....|++||+. ++ +......++. ..+..+.|
T Consensus 173 ~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~---~~~~~~~~ 249 (662)
T 3azo_A 173 AADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE---EAIAQAEW 249 (662)
T ss_dssp TTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT---BCEEEEEE
T ss_pred cccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC---ceEcceEE
Confidence 2333444 44567888999999999998875432 23579999998 57 4444444444 67899999
Q ss_pred cCCCCEEEEEECCC--cEEEEECCCCeEEEEEcCCCCC------CCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 579 DTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGL------PENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 579 s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
+|||+.+++++.++ .|++||..+++.......+... ..+..++|+|++++++++.. +.++||.+
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 99999777777788 6777777677765444332211 11467899999999999988 88888844
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=7.2e-10 Score=137.44 Aligned_cols=585 Identities=9% Similarity=0.039 Sum_probs=337.1
Q ss_pred CCceEEEEcCCCceeeeecccccCccccccc-eEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEE
Q 001403 335 SSPMSMDFHPVQHTLLLGLWDVNSGQKLFIR-NFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 413 (1084)
Q Consensus 335 ~~V~~v~~spdg~~las~~~d~~sg~~~~~~-~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~ 413 (1084)
..|.++.-.++|.+-+. ..+ |-...+| .++.|........ . + ....|.++...++|.+.+ |+.+| +.
T Consensus 43 n~v~~I~qD~~G~lWig-T~~---GL~ryDG~~f~~~~~~~~~~~---~-l--~~n~I~~i~~d~~g~lWi-gT~~G-l~ 110 (795)
T 4a2l_A 43 STVFSIDQDKRGNMWFA-TYD---GVNKYDGYAFTVYQHNEDDPN---S-I--ANDISRIVKTDSQGRVWI-GTRDG-LS 110 (795)
T ss_dssp SCEEEEEECTTSCEEEE-ETT---EEEEECSSCEEEECCCTTCTT---S-C--SCSCEEEEEECTTSCEEE-EESSC-EE
T ss_pred ceeEEEEEcCCCCEEEe-ecC---cCcccCCCceEEEeCCCCCCC---c-c--cccceeEEEECCCCCEEE-EeCCc-hh
Confidence 37889998898854433 122 1111111 2233322110000 0 0 246799999999997665 45566 89
Q ss_pred EEEccCCccccceeeeecccc----cEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccC-CCc-EEEEeecc
Q 001403 414 LYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAP-VYSLCPHA 487 (1084)
Q Consensus 414 iwd~~~~~~~~~~~~l~~h~~----~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h-~~~-v~~~~~~~ 487 (1084)
.||..+++.. .+..... .|.++...++|. +.+ ++. +.|..||..+++.......+ ... |.++...
T Consensus 111 ~yd~~~~~f~----~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d- 181 (795)
T 4a2l_A 111 RYDEEKDIFQ----NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYR- 181 (795)
T ss_dssp EEETTTTEEE----EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEE-
T ss_pred eeCCCCCeEE----eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcceEEEEEC-
Confidence 9998876422 1221111 288999988887 444 343 55899998776543211111 112 7777663
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCCceEee-cCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecc
Q 001403 488 KENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 566 (1084)
Q Consensus 488 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 566 (1084)
.++. +..++.++-+..|+..+.+..... ......|.++...++|.+.+... ..-+..||..+++........
T Consensus 182 -~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~-----~~Gl~~~~~~~~~~~~~~~~~ 254 (795)
T 4a2l_A 182 -QGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE-----GAGLFLINPKTKEIKNYLHSP 254 (795)
T ss_dssp -ETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB-----SSCEEEEETTTTEEEEECCCT
T ss_pred -CCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC-----CCCeEEEeCCCCeEEEeecCC
Confidence 3444 445666555888887765543221 12345688888888887665442 112899998877654332211
Q ss_pred ----ccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCC-----CCCCcceEEEecCCCEEEEEECCCe
Q 001403 567 ----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLAVIANENR 637 (1084)
Q Consensus 567 ----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~~~~~dg~ 637 (1084)
......|.++...++|...+ |+.+ -|.+||..++.......... ....|.++...++|.+ .+|+.++-
T Consensus 255 ~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-Wigt~~~G 331 (795)
T 4a2l_A 255 SNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM-WLGTYFGG 331 (795)
T ss_dssp TCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE-EEEESSSC
T ss_pred CCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE-EEEECCCC
Confidence 11235699999988876544 5555 58999998876554332111 1235778888888864 45666677
Q ss_pred EEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCcccee
Q 001403 638 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 717 (1084)
Q Consensus 638 i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 717 (1084)
|..|+..+.... .... . +.
T Consensus 332 l~~~~~~~~~~~-~~~~----------~----------------------~~---------------------------- 350 (795)
T 4a2l_A 332 LNYYHPIRNRFK-NIRN----------I----------------------PY---------------------------- 350 (795)
T ss_dssp EEEECGGGGSSE-EECC----------C----------------------TT----------------------------
T ss_pred eEEeCCCcccce-EEcC----------C----------------------CC----------------------------
Confidence 777775533211 0000 0 00
Q ss_pred eccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCc
Q 001403 718 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 797 (1084)
Q Consensus 718 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 797 (1084)
+.......|.++...++|. |.+++.++-+..|+...+.. ..+....+. .. .. -....|
T Consensus 351 ---~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~------------~~~~~~~~~-~~-~~----l~~~~v 408 (795)
T 4a2l_A 351 ---KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF------------TSYTLQEDE-SA-RG----IGSNNI 408 (795)
T ss_dssp ---SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE------------EEECCC--------C----CSCSCE
T ss_pred ---CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE------------EEEecCCCC-cc-cC----CCCccE
Confidence 0000234578888888887 55566665666666432211 111100000 00 00 124578
Q ss_pred cEEEecCCCC-EEEEEeCCeEEEEEcCCceeEEEEc----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee
Q 001403 798 PCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 872 (1084)
Q Consensus 798 ~~l~~s~dg~-~l~~~sdg~i~vwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~ 872 (1084)
.+++..++|+ +.+...++.+..||..+++...... .+...|.++...+ ++.+.+ |+.+ -+.+||..+++...
T Consensus 409 ~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~~~~~~~~ 485 (795)
T 4a2l_A 409 KAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNPEQRSFTT 485 (795)
T ss_dssp EEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEETTTTEEEE
T ss_pred EEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeCCCCeEEE
Confidence 8999999998 5554446789999998876543322 1345789999988 676555 4454 58999988776433
Q ss_pred eecc------cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecC-CCCccCCCCceEEEEccCCCEEEE
Q 001403 873 KLEG------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRFLL 945 (1084)
Q Consensus 873 ~l~~------h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~dg~~la~ 945 (1084)
.... +...|.++...++|.+.+... . -|..||..++.. . +... .........|.++...++|.+.+.
T Consensus 486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~-~---~~~~~~~~~l~~~~i~~i~~d~~g~lWig 559 (795)
T 4a2l_A 486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI-Q---KASILPVSNVTKLFTNCIYEASNGIIWVG 559 (795)
T ss_dssp CCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE-E---ECCCSCSCGGGGSCEEEEEECTTSCEEEE
T ss_pred ccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE-E---EecCCCCCCCCCCeeEEEEECCCCCEEEE
Confidence 2211 236799999999988776544 4 488999887543 1 1100 000111236889999999997766
Q ss_pred EeCCeEEEEEcCCcceeeEeecCC---CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccc
Q 001403 946 VHETHLAIYEAEELTCLKQWFPIS---SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLH 1022 (1084)
Q Consensus 946 ~~d~~i~vwd~~~~~~~~~~~~~h---~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1022 (1084)
+.. .|..||..+++... +...+ ...|.++...++|.+.+++ . +-|..|+..++... .+....-++. ..
T Consensus 560 T~~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~~-~~~~~dGl~~----~~ 630 (795)
T 4a2l_A 560 TRE-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKFR-NFTESDGLQS----NQ 630 (795)
T ss_dssp ESS-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEE-EECGGGTCSC----SC
T ss_pred eCC-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcEE-EcCCcCCCcc----cc
Confidence 554 78899987665432 22111 4578999999999876654 4 45778998877654 3332222222 22
Q ss_pred eeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 1023 VYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 1023 v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
+...++..++ || .|..|+.+| +..+++..
T Consensus 631 f~~~~~~~~~-~G-~l~~g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 631 FNTASYCRTS-VG-QMYFGGING-ITTFRPEL 659 (795)
T ss_dssp EEEEEEEECT-TS-CEEEEETTE-EEEECGGG
T ss_pred CccCceeECC-CC-eEEEecCCc-eEEEcHHH
Confidence 3334566666 34 566677777 45556543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-13 Score=149.29 Aligned_cols=246 Identities=11% Similarity=0.087 Sum_probs=177.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeee---ecccccEeEEEee-cCCCcEEEEEEe-CCCcEE
Q 001403 386 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI---DAHVGNVNDLAFS-APCKQISVITCG-DDKTIK 460 (1084)
Q Consensus 386 ~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l---~~h~~~V~~l~~s-~d~~~l~l~s~~-~d~~i~ 460 (1084)
++-..+.+++++|+|+++++...++.|.+||.+ ++.+...... .+|...+..++++ +++. ++++.. .++.|.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence 355678999999999988888889999999987 4333211100 1344578999995 6665 555553 388999
Q ss_pred EEECCCCceeeEecc-CCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec--CCCCeEEEEEEcCCCCEEE
Q 001403 461 VWDAVTGSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLF 537 (1084)
Q Consensus 461 vwd~~~g~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~d~~~l~ 537 (1084)
+|| .+++.+..+.. +...+..+++.+ +|.++++...++.|.+||.+ ++....+. .....+..++++++|+.++
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFI 179 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeC--CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence 999 67877776643 445788898854 66788887888999999864 33333333 3334688999999998766
Q ss_pred EEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCC-cEEEEECCCCeEEEEEcCCCCCCC
Q 001403 538 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-VIKIWDMNKVQLLTTIDAGGGLPE 616 (1084)
Q Consensus 538 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~ 616 (1084)
+... ++.|.+||.. ++.+..+.... +...+..++++++++.+++...++ .|.+||. +++.+..+..+.....
T Consensus 180 ~~~~----~~~i~~~~~~-g~~~~~~~~~g-~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 252 (286)
T 1q7f_A 180 SDNR----AHCVKVFNYE-GQYLRQIGGEG-ITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQ 252 (286)
T ss_dssp EEGG----GTEEEEEETT-CCEEEEESCTT-TSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSC
T ss_pred EECC----CCEEEEEcCC-CCEEEEEccCC-ccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCc
Confidence 6543 5679999974 55555554321 114688999999998888887776 9999995 5667777665444334
Q ss_pred cceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 617 NPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 617 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
+..++++|+|+++++ +.++.|++|+....
T Consensus 253 ~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 253 CFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred ceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 678999999986666 67899999998654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-14 Score=156.77 Aligned_cols=245 Identities=8% Similarity=-0.007 Sum_probs=179.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCC------------------------CEEEEEEccCCccccceeeee-cccccEeEEEeec
Q 001403 389 VSVNRVVWSPDGSLLGVAYSK------------------------HIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSA 443 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~d------------------------g~v~iwd~~~~~~~~~~~~l~-~h~~~V~~l~~s~ 443 (1084)
..+.+++++|+|+++++...+ +.|.+||..+++.+. .+. ++......+++++
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQ---SSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEE---EECTTTCSSEEEEEECT
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEe---ccCCCccCCceEEEECC
Confidence 579999999999999888777 479999999887543 222 4455788999999
Q ss_pred CCCcEEEEEEeCCCcEEEEECCCCc-eeeEe---------ccCCCcEEEEeecccCCCcEEEEEe-cCCeEEEEECCCCC
Q 001403 444 PCKQISVITCGDDKTIKVWDAVTGS-RTYSF---------EGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLG 512 (1084)
Q Consensus 444 d~~~l~l~s~~~d~~i~vwd~~~g~-~~~~~---------~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~ 512 (1084)
+|+ ++++...++.|++||..... .+..+ .++-.....+++++. ++.++++.+ .++.|++|+. .+.
T Consensus 101 ~g~--l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~lyv~d~~~~~~I~~~~~-~g~ 176 (329)
T 3fvz_A 101 DGN--YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGAVFVSDGYCNSRIVQFSP-SGK 176 (329)
T ss_dssp TSC--EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCCEEEEECSSCCEEEEECT-TSC
T ss_pred CCC--EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC-CCeEEEEeCCCCCeEEEEcC-CCC
Confidence 999 78888889999999975442 55555 344557889999542 556777776 6899999994 444
Q ss_pred ceEeecCCC----------CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCC
Q 001403 513 ARVDYDAPG----------LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 582 (1084)
Q Consensus 513 ~~~~~~~~~----------~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 582 (1084)
....+.... .....++++|++..++++.. +++.|++||..+++.+..+.... ....+..++|+| +
T Consensus 177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~---~~~~I~~~~~~~G~~~~~~~~~~-~~~~~~~~~~~p-g 251 (329)
T 3fvz_A 177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR---ENGRIQCFKTDTKEFVREIKHAS-FGRNVFAISYIP-G 251 (329)
T ss_dssp EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET---TTTEEEEEETTTCCEEEEECCTT-TTTCEEEEEEET-T
T ss_pred EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC---CCCEEEEEECCCCcEEEEEeccc-cCCCcceeeecC-C
Confidence 444442211 24789999999555554432 36679999999899888875432 225688999999 3
Q ss_pred CEEEEE-------ECCCcEEEEECCCCeEEEEEcC-CCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 583 DQILAA-------GDDHVIKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 583 ~~l~~~-------~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
..+.+. ..+..|++|+..+++.+..+.. .........++++|+|.++++...++.|++|+...
T Consensus 252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 333332 3455899999999999988742 12334578999999998888888899999999764
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.7e-14 Score=172.83 Aligned_cols=288 Identities=10% Similarity=-0.016 Sum_probs=192.2
Q ss_pred CCCceeeeecccccCccccccceEEEEEcCCccccce---eeeecCCCCCeEEEEEcCCCCEEEEEeCCC-----EEEEE
Q 001403 344 PVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFK---TALVRDPGVSVNRVVWSPDGSLLGVAYSKH-----IVQLY 415 (1084)
Q Consensus 344 pdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~---~~~~~~h~~~V~~v~fspdg~~las~~~dg-----~v~iw 415 (1084)
|||++++....+ .|.. .+.+.+.+...+..... ..+-.+|...+..++|||||++||.+..++ .|++|
T Consensus 81 ~dG~~~~~~~~~--~~~~--~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~ 156 (710)
T 2xdw_A 81 KKGKRYFYFYNT--GLQN--QRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFM 156 (710)
T ss_dssp EETTEEEEEEEC--SSCS--SCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEE
T ss_pred EECCEEEEEEEc--CCce--EEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 999999985443 1210 02334444333222110 012234555789999999999999886543 89999
Q ss_pred EccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCc----------------EEEEECCCCce----eeEecc
Q 001403 416 AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT----------------IKVWDAVTGSR----TYSFEG 475 (1084)
Q Consensus 416 d~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~----------------i~vwd~~~g~~----~~~~~~ 475 (1084)
|+.+++.... .+ ....+..++|+|||+ .|+.++.++. |++|++.++.. +.....
T Consensus 157 d~~tg~~~~~--~~--~~~~~~~~~wspDg~--~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~ 230 (710)
T 2xdw_A 157 KVDGAKELPD--VL--ERVKFSCMAWTHDGK--GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD 230 (710)
T ss_dssp ETTTTEEEEE--EE--EEECSCCEEECTTSS--EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred ECCCCCCCcc--cc--cCcccceEEEEeCCC--EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC
Confidence 9999875442 12 222367899999999 6666666655 99999988763 223333
Q ss_pred CCCcEEEEeecccCCCcEEEEEec-----CCeEEEEECCC------CC-ceEeecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 476 HGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYDS------LG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 476 h~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~iwd~~~------~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
|...+..+.| ++||++|+..+. +..|.+||+.+ +. ....+..+...+.. .|+++|+.|+..+...
T Consensus 231 ~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~ 307 (710)
T 2xdw_A 231 EPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRH 307 (710)
T ss_dssp CTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTT
T ss_pred CCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCC
Confidence 5566778888 557788887765 56899999976 32 34444444444443 5889999998887544
Q ss_pred CCCeeEEEecCCCceE--eeeeeccccccCceEEEEEcCCCCEEEEEECCCc--EEEEECCCCeEEEEEcCCCCCCCcce
Q 001403 544 EGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPR 619 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~ 619 (1084)
.....|.+||+.++.. ...+..+. ....+..++|++++..+++...++. |++|++.+|+.+..+..+ ...+..
T Consensus 308 ~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~ 384 (710)
T 2xdw_A 308 SPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVG 384 (710)
T ss_dssp CTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEEE
T ss_pred CCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC--CceEEE
Confidence 3466799999987742 23444443 0135778899877777788888875 566787778877777765 234678
Q ss_pred EEEecCCCEEEEEEC----CCeEEEEEcCCCC
Q 001403 620 ICFNKNGTLLAVIAN----ENRIKILETPESN 647 (1084)
Q Consensus 620 v~~s~~~~~l~~~~~----dg~i~iwd~~~~~ 647 (1084)
++++|++..++.... .+.+.+||+.+++
T Consensus 385 ~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 385 YSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 889999887665433 4789999998775
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-10 Score=140.38 Aligned_cols=535 Identities=8% Similarity=0.012 Sum_probs=319.6
Q ss_pred CCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEE
Q 001403 335 SSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL 414 (1084)
Q Consensus 335 ~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~i 414 (1084)
..|.++...++|.+.+... +.+..||..+................|.++...++|.+.+.. .+| +..
T Consensus 88 n~I~~i~~d~~g~lWigT~-----------~Gl~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lwi~t-~~g-l~~ 154 (795)
T 4a2l_A 88 DISRIVKTDSQGRVWIGTR-----------DGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLIST-PEG-LIM 154 (795)
T ss_dssp SCEEEEEECTTSCEEEEES-----------SCEEEEETTTTEEEEECCEETTEECCCCEEEEEETTEEEEEE-TTE-EEE
T ss_pred cceeEEEECCCCCEEEEeC-----------CchheeCCCCCeEEeccccccCCCceEEEEEECCCCCEEEEE-CCc-eEE
Confidence 4789999999998776531 447888876543221100000000128899999888766644 444 899
Q ss_pred EEccCCccccceeeeecc-ccc-EeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe-ccCCCcEEEEeecccCCC
Q 001403 415 YAYHGGSDARQQLEIDAH-VGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENI 491 (1084)
Q Consensus 415 wd~~~~~~~~~~~~l~~h-~~~-V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~-~~h~~~v~~~~~~~~~~~ 491 (1084)
||..+++..... .++ ... |.++...+++. +.+ +..++.|..||..+++..... ..+...|.++... .++
T Consensus 155 ~~~~~~~~~~~~---~~~~~~~~i~~i~~d~~g~--lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d--~~g 226 (795)
T 4a2l_A 155 FDIKESKFIDDS---FSTAMHKTIASTLYRQGDQ--IYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQ--SPT 226 (795)
T ss_dssp EETTTTEEECSS---SCHHHHTCCEEEEEEETTE--EEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEE--ETT
T ss_pred EECCCCEEEecc---CCCCCCcceEEEEECCCCC--EEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEc--CCC
Confidence 998776422110 011 123 88898888886 344 555556899998877654321 1234568877763 344
Q ss_pred cEEEEEecCCeEEEEECCCCCceEeecC-------CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeee
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 564 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 564 (1084)
. +..++.++-+..||..+......... ....|.++...++|...+... . -|.+||..+++......
T Consensus 227 ~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~-Gl~~~~~~~~~~~~~~~ 299 (795)
T 4a2l_A 227 R-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-----N-DLNIYHEGTDSFASYSS 299 (795)
T ss_dssp E-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-----S-CEEEEETTTTEEEEECC
T ss_pred C-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-----C-hhheEcCCCCeEEEEec
Confidence 4 44555554477888766443322111 235799999999988766542 1 28999988776544322
Q ss_pred c----cccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC--C--CCCCcceEEEecCCCEEEEEECCC
Q 001403 565 G----LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG--G--GLPENPRICFNKNGTLLAVIANEN 636 (1084)
Q Consensus 565 ~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~--~~~~v~~v~~s~~~~~l~~~~~dg 636 (1084)
. .......|.++...++|. +..|+.++-|..|+..++......... . ....|.+++..++|. |.+|+.++
T Consensus 300 ~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~ 377 (795)
T 4a2l_A 300 NPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDG 377 (795)
T ss_dssp CTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSS
T ss_pred CCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCC
Confidence 1 112236799999988876 556777788999987665433222111 0 123477888888776 44577777
Q ss_pred eEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccce
Q 001403 637 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 716 (1084)
Q Consensus 637 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 716 (1084)
-|..|+..+++........ ... .
T Consensus 378 Gl~~~~~~~~~~~~~~~~~---------------------------------~~~------------------------~ 400 (795)
T 4a2l_A 378 GLNLYNPITQRFTSYTLQE---------------------------------DES------------------------A 400 (795)
T ss_dssp CEEEECTTTCCEEEECCC--------------------------------------------------------------
T ss_pred CeEEEcCCCCcEEEEecCC---------------------------------CCc------------------------c
Confidence 7888887654321110000 000 0
Q ss_pred eeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCC
Q 001403 717 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 796 (1084)
Q Consensus 717 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1084)
. ......|.++...++|..|.+++.++-+.+|+...+.. ..+...... .....
T Consensus 401 -~----~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~------------~~~~~~~~~----------l~~~~ 453 (795)
T 4a2l_A 401 -R----GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV------------ENFNQRNSQ----------LVNEN 453 (795)
T ss_dssp ------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE------------EEECTTTSC----------CSCSC
T ss_pred -c----CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE------------EEeecCCCC----------cCCCe
Confidence 0 00224678888888887455666655677766443211 111110000 13457
Q ss_pred ccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcC------CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee
Q 001403 797 VPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 870 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~ 870 (1084)
|.++...++|.+.+... +.+.+||..+++....... ....|.++...+ ++++.+ |+. +-|..||..+++.
T Consensus 454 v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 454 VYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWI-GGE-EGLSVFKQEGLDI 529 (795)
T ss_dssp EEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEE-EES-SCEEEEEEETTEE
T ss_pred eEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEE-EeC-CceEEEeCCCCeE
Confidence 88999999998776665 5688999887755432211 235789999988 776665 444 4588999887765
Q ss_pred eeeec-------ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEE
Q 001403 871 ISKLE-------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 943 (1084)
Q Consensus 871 ~~~l~-------~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 943 (1084)
.+. .+...|.++...++|.+.+... . -|..||..+++... +....+.. ...|.++...++|.+.
T Consensus 530 --~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~---~~~~~gl~--~~~i~~i~~d~~g~lW 600 (795)
T 4a2l_A 530 --QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKR---YNTTNGLP--NNVVYGILEDSFGRLW 600 (795)
T ss_dssp --EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEE---ECGGGTCS--CSCEEEEEECTTSCEE
T ss_pred --EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEE---eCCCCCCc--hhheEEEEECCCCCEE
Confidence 221 2446799999999988766443 4 48899988754322 22222221 1358889999999877
Q ss_pred EEEeCCeEEEEEcCCcceeeEeecCC---CCCE--EEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001403 944 LLVHETHLAIYEAEELTCLKQWFPIS---SVPI--SQATFSCDCRMVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 944 a~~~d~~i~vwd~~~~~~~~~~~~~h---~~~v--~~l~fs~dg~~l~t~~~dg~i~vwd~~ 1000 (1084)
+++ ++.|..|+..+++.. .+.... ...+ .++...++|.+++ |+.+|.+ .++..
T Consensus 601 i~t-~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~Gl~-~~~p~ 658 (795)
T 4a2l_A 601 LST-NRGISCFNPETEKFR-NFTESDGLQSNQFNTASYCRTSVGQMYF-GGINGIT-TFRPE 658 (795)
T ss_dssp EEE-TTEEEEEETTTTEEE-EECGGGTCSCSCEEEEEEEECTTSCEEE-EETTEEE-EECGG
T ss_pred EEc-CCceEEEcCCCCcEE-EcCCcCCCccccCccCceeECCCCeEEE-ecCCceE-EEcHH
Confidence 766 566888888766543 222111 2222 4677788897665 5677744 45543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-13 Score=150.82 Aligned_cols=273 Identities=10% Similarity=0.027 Sum_probs=186.8
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 415 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iw 415 (1084)
.|.+++|+|++..++....+ +.++.|.-. .. ..+.++...+.+++|+|+|++++++..++.|.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~ 71 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISE---------SELQTITAE---PW---LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKI 71 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCG---------GGSCEEECE---EE---EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEE
T ss_pred ccceeeecCCccceeEEeec---------ccCcccccc---ee---EEEeccCccccCcEECCCCCEEEEECCCCEEEEE
Confidence 67888999999988886555 777788221 11 1244566778999999999988888889999999
Q ss_pred EccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC----CcEEEEECCCCceeeEec--cCCCcEEEEeecccC
Q 001403 416 AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKE 489 (1084)
Q Consensus 416 d~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d----~~i~vwd~~~g~~~~~~~--~h~~~v~~~~~~~~~ 489 (1084)
|.++++... ....+...+.+++|+++|+ ++++...+ +.|.+||.+++.....+. .+...+..+++.+
T Consensus 72 d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-- 144 (333)
T 2dg1_A 72 NPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-- 144 (333)
T ss_dssp CTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT--
T ss_pred eCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC--
Confidence 998876432 1224567899999999998 66666655 689999988877653332 2455788888854
Q ss_pred CCcEEEEEec------CCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-ceEeee
Q 001403 490 NIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRT 562 (1084)
Q Consensus 490 ~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~ 562 (1084)
+|.++++... .+.|..++.+..+... +......+..++|+|+|+.++.+.. .++.|.+||..+ +.....
T Consensus 145 ~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~~~~g~~~~~ 220 (333)
T 2dg1_A 145 KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIALEDDGVTIQP 220 (333)
T ss_dssp TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSSSEEE
T ss_pred CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEecCCCcCccc
Confidence 6667776553 2455555554433322 2222235678999999997766542 245699999863 332221
Q ss_pred ee-----ccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCC----CCCcceEEEecCCCEEEEEE
Q 001403 563 YQ-----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----LPENPRICFNKNGTLLAVIA 633 (1084)
Q Consensus 563 ~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~~~~~l~~~~ 633 (1084)
+. ... ....+..++++++++.+++...++.|.+||. +++.+..+..... ...+.+++|+||++.|++++
T Consensus 221 ~~~~~~~~~~-~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~ 298 (333)
T 2dg1_A 221 FGATIPYYFT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 298 (333)
T ss_dssp EEEEEEEECC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred ccceEEEecC-CCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEe
Confidence 11 111 0135788999999998888888899999998 5666666654321 11468999999987777766
Q ss_pred CCC
Q 001403 634 NEN 636 (1084)
Q Consensus 634 ~dg 636 (1084)
.++
T Consensus 299 ~~g 301 (333)
T 2dg1_A 299 NDI 301 (333)
T ss_dssp ECG
T ss_pred Ccc
Confidence 653
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-13 Score=150.18 Aligned_cols=285 Identities=11% Similarity=0.046 Sum_probs=176.6
Q ss_pred ceEEEEEcCCCCEEEEEE---------CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC---C--e
Q 001403 572 SVSVVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE---N--R 637 (1084)
Q Consensus 572 ~v~~~~~s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d---g--~ 637 (1084)
.+....+ ||++++... .++.|++||+.+++.... ..+..++|+|||+.|+.++.+ + .
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 4566667 788877642 257899999998875443 236789999999999987754 2 3
Q ss_pred EEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCcccee
Q 001403 638 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 717 (1084)
Q Consensus 638 i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 717 (1084)
|.+|++.+++......
T Consensus 87 l~~~~~~~g~~~~l~~---------------------------------------------------------------- 102 (347)
T 2gop_A 87 IWVADLETLSSKKILE---------------------------------------------------------------- 102 (347)
T ss_dssp EEEEETTTTEEEEEEE----------------------------------------------------------------
T ss_pred EEEEECCCCceEEEEc----------------------------------------------------------------
Confidence 6666766543221110
Q ss_pred eccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCc
Q 001403 718 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 797 (1084)
Q Consensus 718 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 797 (1084)
... +..++|+|||+.|+.++.+.. .. .....+
T Consensus 103 -------~~~-~~~~~wspdg~~l~~~~~~~~-------~~---------------------------------~~~~~~ 134 (347)
T 2gop_A 103 -------AKN-IRSLEWNEDSRKLLIVGFKRR-------ED---------------------------------EDFIFE 134 (347)
T ss_dssp -------ESE-EEEEEECTTSSEEEEEEECCC-------C----------------------------------------
T ss_pred -------CCC-ccceeECCCCCEEEEEEccCC-------Cc---------------------------------CCcEEE
Confidence 112 677889999988887765410 00 000011
Q ss_pred cEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCC-------eEEEEEcCCcee
Q 001403 798 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-------TILIYNARSSEV 870 (1084)
Q Consensus 798 ~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg-------~i~iwd~~~~~~ 870 (1084)
..+.+..+|.-+.......|.+||+.+++.+..+.. . .+..++|+| |+ +++++..++ ...||.+.+++.
T Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 210 (347)
T 2gop_A 135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKE 210 (347)
T ss_dssp --CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred cccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCce
Confidence 122233344333222345799999998887455544 3 788999999 78 777776542 344444445554
Q ss_pred eeeecccccCEEEEEEcCCCCEEEEEeCCC--------cEEEEeCCCCceeeeeeeecCCCCccCCCCceE-EEEccCCC
Q 001403 871 ISKLEGHSKRVTGLVFSDALNILVSSGGDA--------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH-IQFHKDQT 941 (1084)
Q Consensus 871 ~~~l~~h~~~V~~l~~spd~~~l~s~s~dg--------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~dg~ 941 (1084)
..+..+ ..+..+ +|||++|+.++.++ .|.+|| +++. .....++.. .+.. +.|+ ||
T Consensus 211 -~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-----~~l~~~~~~---~~~~~~~~s-dg- 274 (347)
T 2gop_A 211 -EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-----MGILDEVDR---GVGQAKIKD-GK- 274 (347)
T ss_dssp -EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-----EESSTTCCS---EEEEEEEET-TE-
T ss_pred -EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-----EeccccCCc---ccCCccEEc-Cc-
Confidence 344445 556554 99999998887543 688888 4331 122222222 4665 8999 88
Q ss_pred EEEE-EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcE-EEEEcCCCc
Q 001403 942 RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL-SIHEASNLE 1003 (1084)
Q Consensus 942 ~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i-~vwd~~~~~ 1003 (1084)
++++ ..++.++|| +.+++.. .+. .+...|.+++|+| .++++++.++.. .+|.+. ++
T Consensus 275 ~~~~~~~~~~~~l~-~~~g~~~-~~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 275 VYFTLFEEGSVNLY-IWDGEIK-PIA-KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp EEEEEEETTEEEEE-EESSSEE-EEE-CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred EEEEEecCCcEEEE-EcCCceE-EEe-cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 6666 578899999 8766543 333 3477899999999 677777777765 888887 55
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-13 Score=168.34 Aligned_cols=254 Identities=11% Similarity=0.016 Sum_probs=176.2
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCE
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 411 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~ 411 (1084)
+|+..+..++|||||++||.++.+ .|.. ...|++||+.++...... +.+ ..+..++|||||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~--~G~~--~~~i~v~d~~tg~~~~~~--~~~--~~~~~~~wspDg~~l~~~~~~~~ 193 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSA--SGSD--WVTIKFMKVDGAKELPDV--LER--VKFSCMAWTHDGKGMFYNAYPQQ 193 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEE--TTCS--CEEEEEEETTTTEEEEEE--EEE--ECSCCEEECTTSSEEEEEECCCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcC--CCCc--eEEEEEEECCCCCCCccc--ccC--cccceEEEEeCCCEEEEEEECCc
Confidence 455568899999999999997654 2211 138999999987654321 211 23678999999999999987765
Q ss_pred ----------------EEEEEccCCcccc-ceeeeecccccEeEEEeecCCCcEEEEEEeC-----CCcEEEEECCC---
Q 001403 412 ----------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DKTIKVWDAVT--- 466 (1084)
Q Consensus 412 ----------------v~iwd~~~~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-----d~~i~vwd~~~--- 466 (1084)
|.+|++.+++... .+.....|...+..++|||||+. |+.++. +..|.+||+.+
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~l~~~d~~~~~~ 271 (710)
T 2xdw_A 194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNRLWYCDLQQESN 271 (710)
T ss_dssp SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred cccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccEEEEEECccccc
Confidence 9999998876321 11122235566889999999994 444432 57899999987
Q ss_pred ---Cc-eeeEeccCCCcEEEEeecccCCCcEEEEEecC----CeEEEEECCCCCc--eEeecCCC--CeEEEEEEcCCCC
Q 001403 467 ---GS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA--RVDYDAPG--LGCTRMAYSANGR 534 (1084)
Q Consensus 467 ---g~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~--~~~~~~~~--~~i~~~~~s~d~~ 534 (1084)
+. ....+..+...+... |++ +|..|+..+.. +.|.+||+.+... ...+..+. ..+..++|++++.
T Consensus 272 ~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 348 (710)
T 2xdw_A 272 GITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF 348 (710)
T ss_dssp SSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE
T ss_pred ccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE
Confidence 53 456676676666553 544 45566555443 3699999987652 23333333 3688899987776
Q ss_pred EEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE----CCCcEEEEECCCCe
Q 001403 535 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ 603 (1084)
Q Consensus 535 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~ 603 (1084)
++++... ++...|++||+.+|+.+..+..+. +.+..+.++|+++.++... ..+.|+.||+.+++
T Consensus 349 lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 349 LVLCYLH--DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEE--TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEEE--CCEEEEEEEECCCCCEEEecCCCC---ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 6666654 335568899987888777777655 7788999999988776542 45789999998877
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-13 Score=167.95 Aligned_cols=286 Identities=9% Similarity=-0.049 Sum_probs=183.4
Q ss_pred EcCCCceeeeecccccCccccccceEEEEEcCCcccccee---eeecCCCCCeEEEEEcCCCCEEEEE-----eCCCEEE
Q 001403 342 FHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKT---ALVRDPGVSVNRVVWSPDGSLLGVA-----YSKHIVQ 413 (1084)
Q Consensus 342 ~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~---~~~~~h~~~V~~v~fspdg~~las~-----~~dg~v~ 413 (1084)
.+|||++++....+ .|+. .+.+.+.+...+...... .+-.+|...+..++|||||++||.+ +.+.+|+
T Consensus 75 p~~dG~~~~~~~~~--~~~~--~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~ 150 (695)
T 2bkl_A 75 PSRRNGRFFYVRTH--KDKE--KAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLH 150 (695)
T ss_dssp CEEETTEEEEEEEC--TTCS--SCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEE
T ss_pred CEEECCEEEEEEEc--CCCe--EEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEE
Confidence 35899999986554 1110 023333333333211110 1123566689999999999999954 3456899
Q ss_pred EEEccCCccccceeeeecccccE--eEEEeecCCCcEEEEEEeCCCc-------------EEEEECCCCc----eeeEec
Q 001403 414 LYAYHGGSDARQQLEIDAHVGNV--NDLAFSAPCKQISVITCGDDKT-------------IKVWDAVTGS----RTYSFE 474 (1084)
Q Consensus 414 iwd~~~~~~~~~~~~l~~h~~~V--~~l~~s~d~~~l~l~s~~~d~~-------------i~vwd~~~g~----~~~~~~ 474 (1084)
+||+.+++.+.. .+...+ ..++|+|||+ .|+.++.|.. |++|++.++. .+....
T Consensus 151 v~dl~tg~~~~~-----~~~~~~~~~~~~wspDg~--~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~ 223 (695)
T 2bkl_A 151 VIDVDSGEWSKV-----DVIEGGKYATPKWTPDSK--GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT 223 (695)
T ss_dssp EEETTTCCBCSS-----CCBSCCTTCCCEECTTSS--EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC
T ss_pred EEECCCCCCcCC-----cccCcccccceEEecCCC--EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC
Confidence 999999875411 122222 6899999999 6777777665 9999999886 334444
Q ss_pred cCCCcEEEEeecccCCCcEEEEEecCC----eEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEE
Q 001403 475 GHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 550 (1084)
Q Consensus 475 ~h~~~v~~~~~~~~~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 550 (1084)
.|...+.++.|+ +||++|+..+.++ .|.+|+..++.. ..+..+...+....+ ++|. ++..+.....+..|.
T Consensus 224 ~~~~~~~~~~~S--pDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~ 298 (695)
T 2bkl_A 224 GDPTTFLQSDLS--RDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVF 298 (695)
T ss_dssp CCTTCEEEEEEC--TTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEE
T ss_pred CCCEEEEEEEEC--CCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEE
Confidence 566678888885 5777887777665 566665544433 333333334455555 6777 665554333467899
Q ss_pred EecCCCceE---eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECC-CCeEEEEEcCCCCCCCcceEEEecCC
Q 001403 551 EWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNG 626 (1084)
Q Consensus 551 ~wd~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~ 626 (1084)
+||+.++.. ...+..+. ...+..++|+ ++..+++...|+..++|.+. +++....+..+. ...+..++++|++
T Consensus 299 ~~d~~~~~~~~~~~l~~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~ 374 (695)
T 2bkl_A 299 EVDPAKPARASWKEIVPEDS--SASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPG-VGAASNLMGLEDL 374 (695)
T ss_dssp EEBTTBCSGGGCEEEECCCS--SCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSS-SSEECCCBSCTTC
T ss_pred EEeCCCCCccCCeEEecCCC--CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCC-CeEEEEeecCCCC
Confidence 999987753 33333321 2457888888 66777888899988888654 455566555432 2246678889999
Q ss_pred CEEEEEEC----CCeEEEEEcCCCC
Q 001403 627 TLLAVIAN----ENRIKILETPESN 647 (1084)
Q Consensus 627 ~~l~~~~~----dg~i~iwd~~~~~ 647 (1084)
..++.... .++|++||+.+++
T Consensus 375 ~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 375 DDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp SEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CEEEEEEcCCCCCCEEEEEECCCCc
Confidence 87775443 3789999998775
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-08 Score=125.09 Aligned_cols=546 Identities=12% Similarity=0.099 Sum_probs=316.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceee-eec---ccccEeEEEeec--CCCcEEEEEEeCCCcEEEE
Q 001403 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE-IDA---HVGNVNDLAFSA--PCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~-l~~---h~~~V~~l~~s~--d~~~l~l~s~~~d~~i~vw 462 (1084)
..|.++...++|..|-.|+.++-+..||..+++....... ... ....|.++.... +|. +..+..++.|..+
T Consensus 66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~ 142 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYL 142 (781)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEE
T ss_pred cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEE
Confidence 5799999999998455567773499999887643210000 000 123588888877 665 3335434568899
Q ss_pred ECCCCceeeEecc------CCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee-------cCCCCeEEEEEE
Q 001403 463 DAVTGSRTYSFEG------HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAY 529 (1084)
Q Consensus 463 d~~~g~~~~~~~~------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~ 529 (1084)
|..+++... +.. ....|.++... .++ .|..++.++-+..||..+....... ......|.++..
T Consensus 143 ~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~ 218 (781)
T 3v9f_A 143 DIATGKFTH-YNKSTVPALPSEQTWTATEA--EDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYK 218 (781)
T ss_dssp ETTTTEEEE-ESTTTCTTCSCCCEEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEE
T ss_pred ECCCCeEEe-eccCcccCCCccceEEEEEC--CCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEE
Confidence 987765432 321 13457777653 344 4555666656888887664332211 112346889999
Q ss_pred cCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecc----ccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEE
Q 001403 530 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 605 (1084)
Q Consensus 530 s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 605 (1084)
.++|.+.+... . -+.+||..+++........ ......|.++...++|. +..|+..+-|.++|..++...
T Consensus 219 d~~g~lwigt~-----~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~ 291 (781)
T 3v9f_A 219 DTNGNIWIGTS-----K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFL 291 (781)
T ss_dssp CTTCCEEEEET-----T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---
T ss_pred cCCCCEEEEeC-----C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeee
Confidence 88888776542 2 3899998877654322211 11235688988887764 566676567889998876543
Q ss_pred EEEc-------CC-----CCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeee
Q 001403 606 TTID-------AG-----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 673 (1084)
Q Consensus 606 ~~~~-------~~-----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~ 673 (1084)
.... .. -....|.++...++|. |-+|+.++-|..++........ ... .+
T Consensus 292 ~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~----------~~------- 352 (781)
T 3v9f_A 292 LPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSY----------SP------- 352 (781)
T ss_dssp ------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC--------------------
T ss_pred eeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-ecc----------Cc-------
Confidence 3221 10 1123477888888776 4556666677777765432111 100 00
Q ss_pred eccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEe
Q 001403 674 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMW 753 (1084)
Q Consensus 674 ~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw 753 (1084)
.. ..+.......|.++...++|. |..++.++-+..|
T Consensus 353 ---------------~~----------------------------~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~ 388 (781)
T 3v9f_A 353 ---------------TQ----------------------------MNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVF 388 (781)
T ss_dssp ----------------C----------------------------CCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEE
T ss_pred ---------------cc----------------------------cccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEE
Confidence 00 000000234577888888777 5555555556666
Q ss_pred eccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEc-
Q 001403 754 RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM- 832 (1084)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~- 832 (1084)
+...... ..+... .......|.+++..++|.+.+...++.+..++..+++......
T Consensus 389 ~~~~~~~------------~~~~~~-----------~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~ 445 (781)
T 3v9f_A 389 ENGKRVA------------IYNKEN-----------RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELE 445 (781)
T ss_dssp ETTEEEE------------ECC----------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCST
T ss_pred ECCCCeE------------EEccCC-----------CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccC
Confidence 6432111 001000 0014567889999888887775556779999987776433221
Q ss_pred -CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccc-----ccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001403 833 -PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-----SKRVTGLVFSDALNILVSSGGDAQIFVWD 906 (1084)
Q Consensus 833 -~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h-----~~~V~~l~~spd~~~l~s~s~dg~I~iwd 906 (1084)
.....|.++...+ ++.+.+ |+. +-|..||..+++........ ...|.++...++|.+.+. +.++-|..||
T Consensus 446 ~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~ 521 (781)
T 3v9f_A 446 KNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYT 521 (781)
T ss_dssp TTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEEC
T ss_pred CCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEe
Confidence 1346789999888 665544 555 55999998876543322211 467999999998887664 4433488899
Q ss_pred CCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCC---CCCEEEEEEccCCC
Q 001403 907 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS---SVPISQATFSCDCR 983 (1084)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h---~~~v~~l~fs~dg~ 983 (1084)
..+++... +....+. ....|.++...++|.+.+++.+|-+..||..+++... +...+ ...|.++...++|.
T Consensus 522 ~~~~~~~~---~~~~~~l--~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~ 595 (781)
T 3v9f_A 522 PDMQLVRK---FNQYEGF--CSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQV-FQRKEGLPNTHIRAISEDKNGN 595 (781)
T ss_dssp TTCCEEEE---ECTTTTC--SCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEE-ECGGGTCSCCCCCEEEECSSSC
T ss_pred CCCCeEEE---ccCCCCC--CCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEE-ccccCCCCCceEEEEEECCCCC
Confidence 87754322 2211111 1246889999999998777665544889987765332 22111 34688899999997
Q ss_pred EEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 984 MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 984 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
+.++ +.+| |..++..++... .+....-++. ......++..++ | ..|..|+.+| +..+++..
T Consensus 596 lW~~-t~~G-l~~~~~~~~~~~-~~~~~dGl~~----~~f~~~~~~~~~-~-G~l~~g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 596 IWAS-TNTG-ISCYITSKKCFY-TYDHSNNIPQ----GSFISGCVTKDH-N-GLIYFGSING-LCFFNPDI 656 (781)
T ss_dssp EEEE-CSSC-EEEEETTTTEEE-EECGGGTCCS----SCEEEEEEEECT-T-SCEEEEETTE-EEEECSCC
T ss_pred EEEE-cCCc-eEEEECCCCceE-EecccCCccc----cccccCceEECC-C-CEEEEECCCc-eEEEChhh
Confidence 6664 4555 777888876553 3332222222 223334556665 3 4566777787 55666643
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-12 Score=139.67 Aligned_cols=205 Identities=13% Similarity=0.075 Sum_probs=143.3
Q ss_pred CccEEEecCCCCEEEEEe---CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ceee
Q 001403 796 AVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI 871 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~-~~~~ 871 (1084)
....++|+|||+++.+++ ++.|.++|+.+++.+.++.... . ...+.. +.+.+++.+.||++.+.++.+ ++..
T Consensus 138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~ 213 (386)
T 3sjl_D 138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPE 213 (386)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEE
Confidence 455789999999888875 4789999999999999886432 1 233433 566777888899999999876 5543
Q ss_pred eeeccc----ccCEE-EEEEc-CCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecC------CCCccCCCCceEEEEccC
Q 001403 872 SKLEGH----SKRVT-GLVFS-DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFHKD 939 (1084)
Q Consensus 872 ~~l~~h----~~~V~-~l~~s-pd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~s~d 939 (1084)
.....+ ..++. ...|. ++|+++. .+.+|+|.+.|+.++.......+... .+-. .+....++++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~--p~g~q~~a~~~~ 290 (386)
T 3sjl_D 214 ITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR--PGGWQQVAYHRA 290 (386)
T ss_dssp EEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE--ECSSSCEEEETT
T ss_pred EeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccccccc--CCCcceeeECCC
Confidence 221111 12222 24564 6775554 66689999999987653222222110 0100 023456888999
Q ss_pred CCEEEEEe-----------CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEEcCCCceeE
Q 001403 940 QTRFLLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQC 1006 (1084)
Q Consensus 940 g~~la~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~dg~i~vwd~~~~~~~~ 1006 (1084)
++.+.+.. .+.|.+.|+.+++.+..+..++ .+.+++|++|++ +|+++. .++.|.++|..+++.+.
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 368 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence 99988852 2579999999999999877653 788999999997 666654 58999999999999998
Q ss_pred Eec
Q 001403 1007 RIL 1009 (1084)
Q Consensus 1007 ~~~ 1009 (1084)
++.
T Consensus 369 ~i~ 371 (386)
T 3sjl_D 369 SVN 371 (386)
T ss_dssp EEC
T ss_pred Eec
Confidence 887
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4.3e-13 Score=147.96 Aligned_cols=263 Identities=11% Similarity=0.056 Sum_probs=184.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
..|.+++|+|++..++..+.++.++.|. ++.. ..+..+...+.+++|+++|+ +++++..++.|.+||.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~i~~~d~~~~~ 77 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPW---LEISKKGLQLEGLNFDRQGQ--LFLLDVFEGNIFKINPETKE 77 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEE---EEEESSCCCEEEEEECTTSC--EEEEETTTCEEEEECTTTCC
T ss_pred cccceeeecCCccceeEEeecccCcccc---ccee---EEEeccCccccCcEECCCCC--EEEEECCCCEEEEEeCCCCc
Confidence 4577889999998888888888899992 3222 24556777789999999998 77788889999999998887
Q ss_pred eeeEeccCCCcEEEEeecccCCCcEEEEEecC----CeEEEEECCCCCceEeec--CCCCeEEEEEEcCCCCEEEEEeeC
Q 001403 469 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 469 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
.......+...+.+++++ +++.++++...+ +.|.+||.++......+. .....+..++++|+|+.+++....
T Consensus 78 ~~~~~~~~~~~~~~i~~~--~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 155 (333)
T 2dg1_A 78 IKRPFVSHKANPAAIKIH--KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRG 155 (333)
T ss_dssp EEEEEECSSSSEEEEEEC--TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred EEEEeeCCCCCcceEEEC--CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccc
Confidence 665444567789999995 466777777666 689999988766543332 234578899999999887765421
Q ss_pred --CCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEE-ECCCcEEEEECCC-CeEEEEE------cCCC
Q 001403 543 --KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK-VQLLTTI------DAGG 612 (1084)
Q Consensus 543 --~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~-~~~~~~~------~~~~ 612 (1084)
.+..+.|+.+|..+++....... . ..+..++|+|+++.++++ +.++.|++||..+ +..+..+ ....
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~~~~-~---~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~ 231 (333)
T 2dg1_A 156 YSTNPLGGVYYVSPDFRTVTPIIQN-I---SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG 231 (333)
T ss_dssp BTTBCCEEEEEECTTSCCEEEEEEE-E---SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS
T ss_pred cccCCCceEEEEeCCCCEEEEeecC-C---CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC
Confidence 11245688888776655433322 2 357889999999876554 5678999999963 3322211 1111
Q ss_pred CCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeecccccc------ceeEEEEcCC
Q 001403 613 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD------NLRKLSVNPI 667 (1084)
Q Consensus 613 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~i~~~~~~p~ 667 (1084)
. ..+..++++++|+++++...++.|.+|+.. ++.+..+..+.. .+.+++++|+
T Consensus 232 ~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 232 H-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp S-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred C-CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCC
Confidence 1 246789999999988888788999999984 555555443322 4566666643
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-11 Score=133.29 Aligned_cols=285 Identities=10% Similarity=0.044 Sum_probs=194.5
Q ss_pred cccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 001403 330 LIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 409 (1084)
Q Consensus 330 l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d 409 (1084)
+..+...+.+++++|+|++.++...+ +.|.+||.. +... ......+...+.+++++++|.++++...+
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~---------~~v~~~d~~-~~~~--~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 77 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKA---------NMISCINLD-GKIT--EYPLPTPDAKVMCLTISSDGEVWFTENAA 77 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTT---------TEEEEECTT-CCEE--EEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred CCCcCCCccceEECCCCCEEEEecCC---------CcEEEEcCC-CCeE--EecCCcccCceeeEEECCCCCEEEeCCCC
Confidence 44555689999999999988875433 789999987 3322 11122345789999999999988887778
Q ss_pred CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceee-EeccCCCcEEEEeeccc
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPHAK 488 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~-~~~~h~~~v~~~~~~~~ 488 (1084)
+.|..||.. ++ .... .+......+.++++.++|. ++++...++.|.+||. +++... ....+...+..+++.
T Consensus 78 ~~i~~~~~~-g~-~~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~-- 149 (299)
T 2z2n_A 78 NKIGRITKK-GI-IKEY-TLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG-- 149 (299)
T ss_dssp TEEEEECTT-SC-EEEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC--
T ss_pred CeEEEECCC-Cc-EEEE-eCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc--
Confidence 889999986 32 2211 2223455789999999998 6777666889999998 665442 223345668888884
Q ss_pred CCCcEEEEEecCCeEEEEECCCCCceEe-ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccc
Q 001403 489 ENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 567 (1084)
Q Consensus 489 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 567 (1084)
+++.++++...++.|..||. +++.... .......+..++++++|+..++... .+.|.+||. +++... +....
T Consensus 150 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~~~-~~~~~ 222 (299)
T 2z2n_A 150 SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEITE-FKIPT 222 (299)
T ss_dssp TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEE-EECSS
T ss_pred CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcEEE-EECCC
Confidence 46677777777789999998 4443322 3333456889999999996665432 456999998 666443 22111
Q ss_pred cccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 568 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 568 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
....+..++++++++.+++...++.|.+||. +++. ..+........+.++++ +++.++++.. .+.+..++..++
T Consensus 223 -~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 223 -PNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp -TTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred -CCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 1256889999999986666657899999998 4543 33332233345788999 8887666654 567777776654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-11 Score=135.36 Aligned_cols=204 Identities=10% Similarity=0.010 Sum_probs=141.5
Q ss_pred ccEEEecCCCCEEEEEe---CCeEEEEEcCCceeEEE-EcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee
Q 001403 797 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 872 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~ 872 (1084)
...++++|||++|++++ ++.|.++| .+++.+.+ +.... ++.+.|++.+.+++.+.||.+.++|. +++.+.
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~ 200 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG 200 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence 34678999999988876 36799999 99998877 65322 24555645567777888999999999 887663
Q ss_pred eec-----ccccC-EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCC----CccCCCCceEEEEccCCCE
Q 001403 873 KLE-----GHSKR-VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG----VMTLAPSETHIQFHKDQTR 942 (1084)
Q Consensus 873 ~l~-----~h~~~-V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~dg~~ 942 (1084)
... ....+ .....+.+++..++..+..+.|.+.|+.++.......+..... ..-.......++++||++.
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ 280 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence 321 11122 2335677777666555678899999997654222111211110 0000123445889999998
Q ss_pred EEEEe-----------CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEEcCCCceeEEe
Q 001403 943 FLLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1008 (1084)
Q Consensus 943 la~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~dg~i~vwd~~~~~~~~~~ 1008 (1084)
+.++. .+.|.++|+.+++.+..+..+ ....+++|+|||+ +++++. .++.|.+||+.+++.+.++
T Consensus 281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 88742 257999999999998887543 3688999999999 777776 4899999999999999774
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-12 Score=141.19 Aligned_cols=201 Identities=9% Similarity=0.068 Sum_probs=142.5
Q ss_pred ccEEEecCCCCEEEEE-eCCeEEEEEcCCceeEEEEcCCC-----CCeEEEEEcCCCCcEEEEEe-CCCeEEEEEcCCce
Q 001403 797 VPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPS-----PTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSE 869 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~-sdg~i~vwd~~~~~~~~~~~~~~-----~~i~~l~~s~~d~~~la~g~-~dg~i~iwd~~~~~ 869 (1084)
...++++++++.+++. .++.|.+||..+++....+.... .....+++ . +++++++.. .++.|.++|..+++
T Consensus 86 p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~ 163 (328)
T 3dsm_A 86 PRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDK 163 (328)
T ss_dssp EEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTE
T ss_pred CcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCe
Confidence 3455666666444443 26788888888888776665332 14556777 3 566666554 48899999999999
Q ss_pred eeeeecccccCEEEEEEcCCCCEEEEEeCC----------CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccC
Q 001403 870 VISKLEGHSKRVTGLVFSDALNILVSSGGD----------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 939 (1084)
Q Consensus 870 ~~~~l~~h~~~V~~l~~spd~~~l~s~s~d----------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 939 (1084)
.+..+... .....++++|+|++++++..+ +.|.++|..+++... .+....+ .....++|+||
T Consensus 164 ~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~~~g-----~~p~~la~~~d 235 (328)
T 3dsm_A 164 VVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKFKLG-----DWPSEVQLNGT 235 (328)
T ss_dssp EEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEECCTT-----CCCEEEEECTT
T ss_pred EEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEecCCC-----CCceeEEEecC
Confidence 88777643 345789999999988877654 789999999876433 2222212 14789999999
Q ss_pred CCEEEEEeCCeEEEEEcCCcceeeEe-ecCCCCCEEEEEEcc-CCCEEEEE----eCCCcEEEEEcCCCceeEEec
Q 001403 940 QTRFLLVHETHLAIYEAEELTCLKQW-FPISSVPISQATFSC-DCRMVFTS----FVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 940 g~~la~~~d~~i~vwd~~~~~~~~~~-~~~h~~~v~~l~fs~-dg~~l~t~----~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
+++|.++.. .|.+||..+++..... ...+......++++| ++..+++. ..++.|.+||.. |+.+.++.
T Consensus 236 ~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 236 RDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp SCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred CCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 999988654 9999999988764321 221246788999999 55555555 578999999998 98887776
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.9e-13 Score=142.23 Aligned_cols=248 Identities=11% Similarity=0.041 Sum_probs=174.3
Q ss_pred ceeeecccCCCCceEEEEcCCCc-eeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQH-TLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~-~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
..+..+..+.....+++|+|+|+ +++++..+ +.|..||..+. . . .+..+...+.+++|+|+|+++
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~---------~~i~~~~~~~~-~--~--~~~~~~~~~~~l~~~~dg~l~ 83 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQ---------NRTWAWSDDGQ-L--S--PEMHPSHHQNGHCLNKQGHLI 83 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGG---------TEEEEEETTSC-E--E--EEESSCSSEEEEEECTTCCEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCC---------CEEEEEECCCC-e--E--EEECCCCCcceeeECCCCcEE
Confidence 34455666666889999999998 66666555 88999999876 2 1 134467789999999999988
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecc-cccEeEEEeecCCCcEEEEE----Ee-------------CCCcEEEEECC
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CG-------------DDKTIKVWDAV 465 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h-~~~V~~l~~s~d~~~l~l~s----~~-------------~d~~i~vwd~~ 465 (1084)
++...++.|.+||..+++.........+. ...+..++++|+|+ ++++ |. ..+.|..++..
T Consensus 84 v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 84 ACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD 161 (296)
T ss_dssp EEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred EEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC
Confidence 88777789999999887643211111111 23467899999998 6776 32 13456666654
Q ss_pred CCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECC-CCCc---eEeecCCCCeEEEEEEcCCCCEEEEEee
Q 001403 466 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGA---RVDYDAPGLGCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 466 ~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~---~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 541 (1084)
++ +..+..+......++|+ ++++.+++.+.++.|.+|+++ .+.. ...+......+..++++++|++.++.
T Consensus 162 -g~-~~~~~~~~~~~~gi~~s--~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-- 235 (296)
T 3e5z_A 162 -GT-LSAPIRDRVKPNGLAFL--PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-- 235 (296)
T ss_dssp -SC-EEEEECCCSSEEEEEEC--TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--
T ss_pred -CC-EEEeecCCCCCccEEEC--CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--
Confidence 44 44455566778889995 466777778888999999997 3332 22233334456789999999977665
Q ss_pred CCCCCeeEEEecCCCceEeeeeeccccccCceEEEEE-cCCCCEEEEEECCCcEEEEECCCCeE
Q 001403 542 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWDMNKVQL 604 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~ 604 (1084)
.+.|.+||.. ++.+..+..+. . +.+++| +|+++.|++++.+ .+..++..+..+
T Consensus 236 ----~~~v~~~~~~-g~~~~~~~~~~---~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 236 ----GDGVHVLTPD-GDELGRVLTPQ---T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp ----TTEEEEECTT-SCEEEEEECSS---C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred ----CCeEEEECCC-CCEEEEEECCC---C-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 2349999986 77777777666 5 888999 5899999998875 455566666543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-12 Score=140.54 Aligned_cols=238 Identities=11% Similarity=0.061 Sum_probs=168.3
Q ss_pred ecCCCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~-~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
+..+.....+++|+|+|+ +++++..++.|..||..++ .. .+..+...+.+++++++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 334556788999999998 7777888899999999986 33 4556777899999999998 67776667899999
Q ss_pred ECCCCceeeEeccC----CCcEEEEeecccCCCcEEEEEec-----------------CCeEEEEECCCCCceEeecCCC
Q 001403 463 DAVTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKAWLYDSLGARVDYDAPG 521 (1084)
Q Consensus 463 d~~~g~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s~s~-----------------dg~i~iwd~~~~~~~~~~~~~~ 521 (1084)
|..+|+........ ...+..+++ +++|.++++.+. .+.|..++.+ .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~--d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCL--APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEE--CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEE--CCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 99888765433221 123456777 457778887321 2345545443 3344444555
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCC-CceE---eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEE
Q 001403 522 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 597 (1084)
Q Consensus 522 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~-~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 597 (1084)
.....++|+|||+.+++.. .++.|++|++. +++. ...+..+ ...+..++++++|+.+++. ++.|.+|
T Consensus 172 ~~~~gi~~s~dg~~lv~~~----~~~~i~~~~~~~~g~~~~~~~~~~~~---~~~p~~i~~d~~G~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDT----GDNATHRYCLNARGETEYQGVHFTVE---PGKTDGLRVDAGGLIWASA--GDGVHVL 242 (296)
T ss_dssp SSEEEEEECTTSCEEEEET----TTTEEEEEEECSSSCEEEEEEEECCS---SSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred CCCccEEECCCCCEEEEeC----CCCeEEEEEECCCCcCcCCCeEeeCC---CCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence 5678999999999994443 25679999986 5554 3333222 2556789999999866665 8899999
Q ss_pred ECCCCeEEEEEcCCCCCCCcceEEE-ecCCCEEEEEECCCeEEEEEcCCC
Q 001403 598 DMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 598 d~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
|.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+.-++..+.
T Consensus 243 ~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 243 TPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp CTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred CCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 986 777777765543 688999 5899999998876 4555566554
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-12 Score=136.73 Aligned_cols=247 Identities=9% Similarity=-0.000 Sum_probs=177.9
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeEEEEcCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccc-cCE
Q 001403 805 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRV 881 (1084)
Q Consensus 805 dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~-~~V 881 (1084)
.++.|++++ ++.|.+||.++|+.+.++..+. ..+.+++++| +|++++ +.++.|+.||. +|+.+.++..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 456777776 7999999999999999998766 5789999999 888888 45788999999 899999888653 478
Q ss_pred EEEEEcCCCCEEEEEeC-CCcEEEEeCCCCceeeeeeeecC-CCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCC
Q 001403 882 TGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE 958 (1084)
Q Consensus 882 ~~l~~spd~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~ 958 (1084)
.++.+.+||+++++.+. ++.|..+|. .|+......+... .++.. ....+++.++|.++++. .++.|..||..
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~---~~~~v~~~~~G~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHA---QFRQINKNKKGNYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGG---SCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccc---cccCceECCCCCEEEEecCCCEEEEECCC-
Confidence 89999999999999887 777888886 4443332222111 11111 34566889999999985 67899999998
Q ss_pred cceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEE
Q 001403 959 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1038 (1084)
Q Consensus 959 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l 1038 (1084)
|+.+.++.. ...+.++.+.++|..+++++.++.|..+|..+|+.+.++..... +.. .-.++..++..+ +|+.+
T Consensus 155 G~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~~~---~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 155 GQLLNSVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-EGV---QLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp SCEEEEEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-BSC---CCSEEEEEEECT-TSCEE
T ss_pred CCEEEEEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-CCc---cccccccceEcC-CCCEE
Confidence 998887554 24566788899999999998888999999999999988863211 110 113455667777 57777
Q ss_pred EEEeCC--------CcEEEEcCC-CCCCCcccCCCCCc
Q 001403 1039 AVGLTN--------GEVYVIEPN-EPGDTWAVLPPDEI 1067 (1084)
Q Consensus 1039 ~~~~~d--------g~v~vw~~~-~~~~~~~~~~~~~~ 1067 (1084)
++.+.. +..+++++. +.+..|......+.
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~ 265 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKF 265 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTS
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecCcccc
Confidence 766321 233556653 33445665444444
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-12 Score=141.65 Aligned_cols=273 Identities=11% Similarity=0.016 Sum_probs=187.4
Q ss_pred ceEEEEEcCCccccceeee-ec--CCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKTAL-VR--DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~-~~--~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
++|.+||.++......... .. ........+++. +++.+++...++.|.+||..+++.+. .+. .......+++
T Consensus 17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~---~i~-~~~~p~~i~~ 91 (328)
T 3dsm_A 17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG---RIT-GFTSPRYIHF 91 (328)
T ss_dssp BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE---EEE-CCSSEEEEEE
T ss_pred ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE---EcC-CCCCCcEEEE
Confidence 8999999988654321100 01 122456778874 45555666678899999999987665 332 3456889999
Q ss_pred ecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCC-----CcEEEEeecccCCCcEEEEEe-cCCeEEEEECCCCCceE
Q 001403 442 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-----APVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGARV 515 (1084)
Q Consensus 442 s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~ 515 (1084)
+++++ +.++...++.|.+||..+++...++.... .....+++ . ++.++++.. .++.|.++|..+.+...
T Consensus 92 ~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~~~v~viD~~t~~~~~ 166 (328)
T 3dsm_A 92 LSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQNRILKIDTETDKVVD 166 (328)
T ss_dssp EETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTCCEEEEEETTTTEEEE
T ss_pred eCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCCCEEEEEECCCCeEEE
Confidence 99985 56665578999999999999887775433 13445666 2 334444443 48999999999887666
Q ss_pred eecCCCCeEEEEEEcCCCCEEEEEeeCCCC------CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE
Q 001403 516 DYDAPGLGCTRMAYSANGRRLFSCGTSKEG------ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 589 (1084)
Q Consensus 516 ~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~------~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 589 (1084)
.+... .....++++|+|++++++..+... .+.|.++|..+++....+.... ......++|+|+++.++++.
T Consensus 167 ~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 167 ELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp EEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEEEES
T ss_pred EEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEEEEc
Confidence 65543 244678999999977766432100 2679999999998877765432 13688999999999998876
Q ss_pred CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec-CCCEEEEE----ECCCeEEEEEcCCCCeeeecc
Q 001403 590 DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVI----ANENRIKILETPESNSVDAAG 653 (1084)
Q Consensus 590 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~ 653 (1084)
. .|.+||..+++................++++| ++.++++. ..++.|.+||.. ++.+..+.
T Consensus 244 ~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 244 N--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp S--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred c--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 5 89999999887642111111123467899999 55555555 567899999998 77776654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.5e-13 Score=163.37 Aligned_cols=285 Identities=8% Similarity=0.020 Sum_probs=181.2
Q ss_pred EcCCCceeeeecccccCccccccceEEEEEcCC-----ccccce---eeeecCCCCCeEEEEEcCCCCEEEEEeCC----
Q 001403 342 FHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGA-----CSMLFK---TALVRDPGVSVNRVVWSPDGSLLGVAYSK---- 409 (1084)
Q Consensus 342 ~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~-----~~~~~~---~~~~~~h~~~V~~v~fspdg~~las~~~d---- 409 (1084)
.+|||++++....+ .|. ..-.+|.... +..... ..+..+|...+..++|||||++||.+..+
T Consensus 114 p~pdG~~~~~~~~~--~~~----~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e 187 (741)
T 1yr2_A 114 PQRRGASVFYSWNS--GLM----NQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSD 187 (741)
T ss_dssp CEEETTEEEEEEEC--SSC----SSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCS
T ss_pred CEEECCEEEEEEEc--CCC----eEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCc
Confidence 34999999986544 121 1234554432 221110 01123444578899999999999988654
Q ss_pred -CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCC--------------cEEEEECCCCce----e
Q 001403 410 -HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--------------TIKVWDAVTGSR----T 470 (1084)
Q Consensus 410 -g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~--------------~i~vwd~~~g~~----~ 470 (1084)
..|++||+.+|+.+. ...+...+..++|+|| + .|+.++.++ .|++|++.++.. +
T Consensus 188 ~~~i~v~dl~tg~~~~----~~~~~~~~~~~~wspD-~--~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv 260 (741)
T 1yr2_A 188 WRTVKFVGVADGKPLA----DELKWVKFSGLAWLGN-D--ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPV 260 (741)
T ss_dssp EEEEEEEETTTCCEEE----EEEEEEESCCCEESTT-S--EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEE
T ss_pred eEEEEEEECCCCCCCC----ccCCCceeccEEEECC-C--EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEE
Confidence 469999999987543 1122223468899999 8 455555544 389999987762 2
Q ss_pred eEeccCCCcEEEEeecccCCCcEEEEEecCC-----eEEEEECCCC--CceEeecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 471 YSFEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 471 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
.....+...+..+.| ++||++|+..+.++ .|.+||++++ .....+..+....... ++|+|+.|+..+..+
T Consensus 261 ~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~ 337 (741)
T 1yr2_A 261 FATPELPKRGHGASV--SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDG 337 (741)
T ss_dssp ECCTTCTTCEEEEEE--CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTT
T ss_pred eccCCCCeEEEEEEE--CCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCC
Confidence 222334445778888 55778888777554 7999999876 3133333333333444 349999999887654
Q ss_pred CCCeeEEEecCCCc--eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECC-CCeEEEEEcCCCCCCCcceE
Q 001403 544 EGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRI 620 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v 620 (1084)
..+..|.+||+.++ +....+..+. ..+..+.++ ++..+++...|+..++|.+. ++.....+..+. ...+..+
T Consensus 338 ~~~~~l~~~d~~~~~~~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~v~~~ 412 (741)
T 1yr2_A 338 APLKKIVRVDLSGSTPRFDTVVPESK---DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPG-IGSASGL 412 (741)
T ss_dssp CTTCEEEEEECSSSSCEEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSS-SCEEEEE
T ss_pred CCCCEEEEEeCCCCccccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCC-CeEEEEe
Confidence 44678999999874 3444444433 456677777 55667778888887777554 456666665432 2346788
Q ss_pred EEecCCCEEEEEEC----CCeEEEEEcCCCC
Q 001403 621 CFNKNGTLLAVIAN----ENRIKILETPESN 647 (1084)
Q Consensus 621 ~~s~~~~~l~~~~~----dg~i~iwd~~~~~ 647 (1084)
+++|+++.++.... .++|++||+.+++
T Consensus 413 ~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 413 SGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp ECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred ecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 89999886664432 3789999998775
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-13 Score=164.19 Aligned_cols=255 Identities=8% Similarity=-0.081 Sum_probs=166.8
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCE
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 411 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~ 411 (1084)
+|+..+..++|||||++||..... +|.. ..+|++||+.++...... .+.+. ....++|||||+.|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~--~G~~--~~~i~v~dl~tg~~~~~~-~~~~~--~~~~~~wspDg~~l~~~~~d~~ 190 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKP--NAAD--EAVLHVIDVDSGEWSKVD-VIEGG--KYATPKWTPDSKGFYYEWLPTD 190 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEE--TTCS--CCEEEEEETTTCCBCSSC-CBSCC--TTCCCEECTTSSEEEEEECCCC
T ss_pred CCCEEEEEEEECCCCCEEEEEECC--CCCc--eEEEEEEECCCCCCcCCc-ccCcc--cccceEEecCCCEEEEEEecCC
Confidence 566678999999999999975443 1211 278999999987654111 12111 1267999999999999988766
Q ss_pred -------------EEEEEccCCccc-cceeeeecccccEeEEEeecCCCcEEEEEEeCCC----cEEEEECCCCceeeEe
Q 001403 412 -------------VQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK----TIKVWDAVTGSRTYSF 473 (1084)
Q Consensus 412 -------------v~iwd~~~~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~----~i~vwd~~~g~~~~~~ 473 (1084)
|++|++.+++.- ..+.....|...+..+.|||||+. |+.++.++ .|.+||..++. ...+
T Consensus 191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~~~~~~~~-~~~l 267 (695)
T 2bkl_A 191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYWKRPGEKD-FRLL 267 (695)
T ss_dssp TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEEECTTCSS-CEEE
T ss_pred CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEEEcCCCCc-eEEe
Confidence 999999987632 122233345567899999999995 44444344 67777765554 4455
Q ss_pred ccCCCcEEEEeecccCCCcEEEEEe---cCCeEEEEECCCCCc---eEeecCC-CCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001403 474 EGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGE 546 (1084)
Q Consensus 474 ~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~---~~~~~~~-~~~i~~~~~s~d~~~l~~~~~~~~~~ 546 (1084)
..+...+....+ + +|.+++... .++.|.+||+++... ...+... ...+..++++ ++.++++... ++.
T Consensus 268 ~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~--dg~ 341 (695)
T 2bkl_A 268 VKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLK--DAT 341 (695)
T ss_dssp EECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEE--TTE
T ss_pred ecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEE--CCE
Confidence 556555555555 2 344444444 257899999987653 2333333 4567888888 5666666554 334
Q ss_pred eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE----CCCcEEEEECCCCeEE
Q 001403 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQLL 605 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~~ 605 (1084)
..|.++++. ++....+..+. ...+..++++|+++.++... ..++|++||+.+++..
T Consensus 342 ~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 342 SEVRVATLK-GKPVRTVQLPG--VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE 401 (695)
T ss_dssp EEEEEEETT-CCEEEECCCSS--SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEEEEEeCC-CCeeEEecCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 456666654 55555555442 25677788999998777533 3478999999988743
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.6e-12 Score=133.62 Aligned_cols=248 Identities=12% Similarity=0.092 Sum_probs=180.9
Q ss_pred CCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCC-CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccc
Q 001403 345 VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA 423 (1084)
Q Consensus 345 dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~-~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~ 423 (1084)
.+++|++++.| +.|.+||.++++...+.. .+. ..+.+++++|+|++|+ +.++.|..||. +|+.+
T Consensus 4 ~~~~lv~~~~~---------~~v~~~d~~tG~~~w~~~---~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~ 68 (276)
T 3no2_A 4 PQHLLVGGSGW---------NKIAIINKDTKEIVWEYP---LEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGREL 68 (276)
T ss_dssp CCEEEEECTTC---------SEEEEEETTTTEEEEEEE---CCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEE
T ss_pred CCcEEEeeCCC---------CEEEEEECCCCeEEEEeC---CCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEE
Confidence 45788888777 999999998888776542 333 4789999999999998 45677999999 77655
Q ss_pred cceeeeecc-cccEeEEEeecCCCcEEEEEEeC-CCcEEEEECCCCceeeEecc------CCCcEEEEeecccCCCcEEE
Q 001403 424 RQQLEIDAH-VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEG------HGAPVYSLCPHAKENIHFIF 495 (1084)
Q Consensus 424 ~~~~~l~~h-~~~V~~l~~s~d~~~l~l~s~~~-d~~i~vwd~~~g~~~~~~~~------h~~~v~~~~~~~~~~~~~l~ 495 (1084)
. .+..+ ...+.++.+.+||+ ++++.+. ++.|..+|. +|+.+.++.. +......+++ .++|++++
T Consensus 69 W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G~~lv 140 (276)
T 3no2_A 69 W---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKGNYLV 140 (276)
T ss_dssp E---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTSCEEE
T ss_pred E---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCCCEEE
Confidence 4 44443 34688999999999 7777776 778888884 7887776642 1122333344 55788999
Q ss_pred EEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccc---cCc
Q 001403 496 SISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ---HNS 572 (1084)
Q Consensus 496 s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~---~~~ 572 (1084)
+...++.|..||.+ ++.+..+.... ...++.+.++|+.++++.. .+.|..+|..+|+.+..+...... -..
T Consensus 141 ~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~ 214 (276)
T 3no2_A 141 PLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGVQLFF 214 (276)
T ss_dssp EETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSCCCSE
T ss_pred EecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCccccc
Confidence 99999999999988 88877776643 4456778899999988753 457999999999999888754311 123
Q ss_pred eEEEEEcCCCCEEEEEECC--------CcEEEEEC-CCCeEEEEEcCCCCCCCcceEE
Q 001403 573 VSVVHFDTAKDQILAAGDD--------HVIKIWDM-NKVQLLTTIDAGGGLPENPRIC 621 (1084)
Q Consensus 573 v~~~~~s~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~ 621 (1084)
+..+...++|+.+++.+.. +..+++.+ .+|+.+..+........+..++
T Consensus 215 ~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 215 VAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp EEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 7888889999988887421 23345555 4788888887666655566554
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-11 Score=134.97 Aligned_cols=313 Identities=9% Similarity=0.014 Sum_probs=201.7
Q ss_pred cccCCCcEEEEEec-----CCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeC------CCCCeeEEEecC
Q 001403 486 HAKENIHFIFSISV-----DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS------KEGESFLVEWNE 554 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~------~~~~~~i~~wd~ 554 (1084)
.+.++++.++.... ++.|.+.|..+.+....+.....+ . ++++|||++++++... ++.++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 34567777777765 679999999998887777655555 3 9999999999887521 112567999999
Q ss_pred CCceEeeeeeccc----cccCceEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCE
Q 001403 555 SEGAIKRTYQGLQ----LQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 628 (1084)
Q Consensus 555 ~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 628 (1084)
.+++.+..+.... ........++|+|||++++++.. ++.|.++|+.+++.+..+...+. ...+....+.
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-----~~~~P~g~~~ 191 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-----YHIFPTAPDT 191 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-----ceeecCCCce
Confidence 9999988875321 00124567899999999998864 68999999999999999864321 2334335567
Q ss_pred EEEEECCCeEEEEEcCC-CCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccc
Q 001403 629 LAVIANENRIKILETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 707 (1084)
Q Consensus 629 l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~ 707 (1084)
+++.+.||.+.+.++.+ ++...... .+++.
T Consensus 192 ~~~~~~DG~~~~v~~~~~g~v~~~~~-------------------------------------------------~~~~~ 222 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGTEGTPEITHT-------------------------------------------------EVFHP 222 (386)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEEC-------------------------------------------------CCCSC
T ss_pred eEEECCCCCEEEEECCCCCeEEEeec-------------------------------------------------ceecc
Confidence 77888899988888875 33211000 00000
Q ss_pred eeecCccceeeccCCccccceE-EEEEEe-cCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCcccc
Q 001403 708 LFARPSECQSLLLPSKVKANKI-SRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV 785 (1084)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~i-~~l~~s-~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1084)
. ...+ ....|. ++|+.++ .+.+|.+.+.|...+.... +.-|++-....+.
T Consensus 223 ~-----------------~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v---------~~~~~~~~~~~~~- 274 (386)
T 3sjl_D 223 E-----------------DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKF---------LPAVEALTEAERA- 274 (386)
T ss_dssp T-----------------TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEE---------CCCEESSCHHHHH-
T ss_pred c-----------------cccccccceeEcCCCcEEE-EeCCCEEEEEECCCCccee---------ecceecccccccc-
Confidence 0 0000 012443 5665444 4446788888765432110 0011100000000
Q ss_pred ccCcCCCCCCCccEEEecCCCCEEEEEe-----------CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCc-EEEE
Q 001403 786 NDTTDSNSQEAVPCFALSKNDAYLFSAS-----------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAI 853 (1084)
Q Consensus 786 ~~~~~~~~~~~v~~l~~s~dg~~l~~~s-----------dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~la~ 853 (1084)
.+ -.......++++++++.+.... .+.|.++|+.+++.+.++... ..+..+++++ |++ +|++
T Consensus 275 ---~g-~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~-D~~~~ly~ 348 (386)
T 3sjl_D 275 ---DG-WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQ-DEKPLLYA 348 (386)
T ss_dssp ---TT-EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECS-SSSCEEEE
T ss_pred ---cc-ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECC-CCCeEEEE
Confidence 00 0123445678899999888764 146999999999999888733 3678999999 665 6666
Q ss_pred E-eCCCeEEEEEcCCceeeeeecccccCEEEEEEcCC
Q 001403 854 G-MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA 889 (1084)
Q Consensus 854 g-~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd 889 (1084)
. ..++.|.++|..+++.+.++..- +.-..|.+++|
T Consensus 349 tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 349 LSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred EcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 5 45899999999999999887632 22344666665
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=7.6e-11 Score=127.49 Aligned_cols=239 Identities=11% Similarity=0.024 Sum_probs=169.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
+...+.+++++++|+++++...++.|.+||.. ++. ... .+..+...+.+++++++|. ++++...++.|..||..
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEY-PLPTPDAKVMCLTISSDGE--VWFTENAANKIGRITKK- 86 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTT-
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEe-cCCcccCceeeEEECCCCC--EEEeCCCCCeEEEECCC-
Confidence 45689999999999988877768899999988 542 211 2223456799999999998 66766668889999976
Q ss_pred Cce-eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCce-EeecCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001403 467 GSR-TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGTSKE 544 (1084)
Q Consensus 467 g~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 544 (1084)
++. ...+......+..+++. +++.++++...++.|..||. ++... .........+..+++.++|+..++...
T Consensus 87 g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~--- 160 (299)
T 2z2n_A 87 GIIKEYTLPNPDSAPYGITEG--PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ--- 160 (299)
T ss_dssp SCEEEEECSSTTCCEEEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT---
T ss_pred CcEEEEeCCCcCCCceeeEEC--CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC---
Confidence 433 22222345578888884 46677777777889999988 33332 222334457889999999987776532
Q ss_pred CCeeEEEecCCCceEeee-eeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEe
Q 001403 545 GESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 623 (1084)
Q Consensus 545 ~~~~i~~wd~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 623 (1084)
.+.|..||. +++.... .... ...+..+++++++...++...++.|.+||. +++... +........+..++++
T Consensus 161 -~~~i~~~~~-~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~ 233 (299)
T 2z2n_A 161 -NNAIGRITE-SGDITEFKIPTP---ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAG 233 (299)
T ss_dssp -TTEEEEECT-TCCEEEEECSST---TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEEC
T ss_pred -CCEEEEEcC-CCcEEEeeCCCC---CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEEC
Confidence 456999998 6665442 2222 256889999999987776667889999999 666443 3333233457899999
Q ss_pred cCCCEEEEEECCCeEEEEEcC
Q 001403 624 KNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 624 ~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
++|+++++...++.|..|+..
T Consensus 234 ~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 234 AGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp STTCEEEEETTTTEEEEEETT
T ss_pred CCCCEEEeccCCceEEEECCC
Confidence 999876666577899999983
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.2e-11 Score=132.77 Aligned_cols=286 Identities=12% Similarity=0.007 Sum_probs=186.0
Q ss_pred EEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe----------CCC
Q 001403 341 DFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY----------SKH 410 (1084)
Q Consensus 341 ~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~----------~dg 410 (1084)
...||++++.+.... ..+. . .+|.+||..+.+.... +.....+ .++|||||++++++. .++
T Consensus 27 ~~~~~~~~~yv~~~~-~~~~-~--~~v~v~D~~t~~~~~~---i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~ 97 (373)
T 2mad_H 27 APGADGRRSYINLPA-HHSA-I--IQQWVLDAGSGSILGH---VNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred cCCCCCCEEEEeCCc-ccCC-c--cEEEEEECCCCeEEEE---ecCCCCC--CeEECCCCCEEEEEeccccccccCCCCC
Confidence 455888877774210 0000 0 1889999988765432 2212222 899999999999986 367
Q ss_pred EEEEEEccCCccccceeee-ecc---cccEeEEEeecCCCcEEEEEEeC--CCcEEEEECCCCceeeE-eccCCCcEEEE
Q 001403 411 IVQLYAYHGGSDARQQLEI-DAH---VGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYS-FEGHGAPVYSL 483 (1084)
Q Consensus 411 ~v~iwd~~~~~~~~~~~~l-~~h---~~~V~~l~~s~d~~~l~l~s~~~--d~~i~vwd~~~g~~~~~-~~~h~~~v~~~ 483 (1084)
.|.+||..+.+.+..+..- ..+ ...-..++|+|||+ +|+.++. ++.|.++| ++++.+.+ +... .. +
T Consensus 98 ~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~~---~ 170 (373)
T 2mad_H 98 YVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-TC---Y 170 (373)
T ss_pred eEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-ce---E
Confidence 8999999987665433111 000 12345789999999 5555543 57899999 99998877 6432 22 3
Q ss_pred eecccCCCcEEEEEecCCeEEEEECCCCCceEeec-----CCCCe-EEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc
Q 001403 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----APGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557 (1084)
Q Consensus 484 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~-i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~ 557 (1084)
.+.+.+. ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+. .+.+.+.|..++
T Consensus 171 ~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~v~vid~~~~ 244 (373)
T 2mad_H 171 HIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY----SGKILQADISAA 244 (373)
T ss_pred EEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC----CceEEEEeccCC
Confidence 3333332 45677888999999999 665542221 11112 233566777666555443 446888898654
Q ss_pred e--Eeeeeeccc-------cccCceEEEEEcCCCCEEEEEEC----------CCcEEEEECCCCeEEEEEcCCCCCCCcc
Q 001403 558 A--IKRTYQGLQ-------LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLLTTIDAGGGLPENP 618 (1084)
Q Consensus 558 ~--~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 618 (1084)
. .+..+.... ........+.++|+++.++++.. .+.|.++|..+++.+..+..... ..
T Consensus 245 ~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~---p~ 321 (373)
T 2mad_H 245 GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHD---VD 321 (373)
T ss_pred cceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCC---cC
Confidence 3 222221100 00122445789999998888653 35799999999999999875443 68
Q ss_pred eEEEecCCC-EEEEEE-CCCeEEEEEcCCCCeeee
Q 001403 619 RICFNKNGT-LLAVIA-NENRIKILETPESNSVDA 651 (1084)
Q Consensus 619 ~v~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~ 651 (1084)
.++|+|||+ +++++. .++.|.++|..+++.+..
T Consensus 322 ~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred eEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 999999999 677776 489999999999988766
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-12 Score=136.62 Aligned_cols=239 Identities=11% Similarity=0.022 Sum_probs=165.7
Q ss_pred CccEEEecCCCCEEE-EEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee
Q 001403 796 AVPCFALSKNDAYLF-SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 873 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~-~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~ 873 (1084)
...+++++++|++++ +.. ++.|.+|+..+.........+...+.++++++ +++++++.. ++.|.+||..+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678899999999776 423 68899999866543322223335678999999 787666555 88999999876543322
Q ss_pred ecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEE
Q 001403 874 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA 952 (1084)
Q Consensus 874 l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~ 952 (1084)
.......+.+++++++|+++++...++.|.+|+..+..... ....+ . ..+..++++++|+++++. .++.|.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~----~~~~~-~---~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV----LPFTG-L---NDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE----CCCCS-C---CSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe----ecccc-C---CCceeEEEeCCCCEEEEECCCCEEE
Confidence 22233578999999999988887788899999766533111 11111 1 146789999999977765 567999
Q ss_pred EEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECC
Q 001403 953 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHP 1032 (1084)
Q Consensus 953 vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p 1032 (1084)
+||..++..... ...+...+.+++++++|.++++...++.|.+|+..+..... .. . ...-.+..++++|
T Consensus 175 ~~~~~~~~~~~~-~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~------~---~~~~~p~~i~~~~ 243 (270)
T 1rwi_B 175 KLEAESNNQVVL-PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP------F---TGLNTPLAVAVDS 243 (270)
T ss_dssp EECTTTCCEEEC-CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC------C---CSCSCEEEEEECT
T ss_pred EEecCCCceEee-cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec------c---CCCCCceeEEECC
Confidence 999886654432 22334678999999999877777778899999987654432 11 0 0112356788998
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 1033 LKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1033 ~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
||+.+++...++.|+++++.++.
T Consensus 244 -~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 244 -DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp -TCCEEEEEGGGTEEEEECCCGGG
T ss_pred -CCCEEEEECCCCEEEEEcCCCcc
Confidence 57888888899999999996654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.3e-08 Score=119.70 Aligned_cols=557 Identities=12% Similarity=0.029 Sum_probs=317.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeee-------cccccEeEEEeecCCCcEEEEEEeCCCcEE
Q 001403 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-------AHVGNVNDLAFSAPCKQISVITCGDDKTIK 460 (1084)
Q Consensus 388 ~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~-------~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~ 460 (1084)
...|.++.-.++|. |-.|..+| +..||-.+ ++...... -....|.++...++|. .|-.|+.++-+.
T Consensus 18 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---f~~~~~~~~~~~~~~l~~n~I~~i~~d~~g~--~lWigt~~~Gl~ 90 (781)
T 3v9f_A 18 NNYVLSITQDKQGF-LWFATEEG-LNKFDGTR---FITYYKEEQSSSVQSITGNELNEVYTDPVQP--VIWIATQRAGLN 90 (781)
T ss_dssp CSBEEEEEECTTSC-EEEEESSC-EEEECSSS---EEEECCCSSCSSSCCCSCSCEEEEEECSSSS--EEEEEESSSCEE
T ss_pred cCEeEEEEECCCCC-EEEccCCc-CccccCCc---eEEEEcCCCCCccccccccccceEEEcCCCC--EEEEEeCCCCcc
Confidence 46899999998885 56677788 77777443 22111100 0123588998887776 244455564699
Q ss_pred EEECCCCceeeEe-c---c---CCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec-----CCCCeEEEEE
Q 001403 461 VWDAVTGSRTYSF-E---G---HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----APGLGCTRMA 528 (1084)
Q Consensus 461 vwd~~~g~~~~~~-~---~---h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~~~ 528 (1084)
.||..+++...-. . . ....|.++......++ .|..++.++-+..+|..+........ .....|.++.
T Consensus 91 ~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g-~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~ 169 (781)
T 3v9f_A 91 AYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGK-GLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTAT 169 (781)
T ss_dssp EEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTS-EEEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEE
T ss_pred eECCCCCeEEeeccccCCCCCcccCcceEEEecCccCC-CEEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEE
Confidence 9998877643221 1 0 1235777766321044 45556645557778876543322211 1234678888
Q ss_pred EcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecc----ccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeE
Q 001403 529 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 604 (1084)
Q Consensus 529 ~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 604 (1084)
..++|.+.+... .+-|..||..+++........ ......|.++...+++...+ |+.+ -+.+||..+++.
T Consensus 170 ~d~~g~lwigt~-----~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~ 242 (781)
T 3v9f_A 170 EAEDGKLYIGHV-----EGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANTETF 242 (781)
T ss_dssp EEETTEEEEEET-----TTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTTTEE
T ss_pred ECCCCCEEEEec-----CCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCCCcE
Confidence 888887665432 223888998877654321111 11125688888888876554 4555 689999887765
Q ss_pred EEEEcCC-----CCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCce
Q 001403 605 LTTIDAG-----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 679 (1084)
Q Consensus 605 ~~~~~~~-----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~ 679 (1084)
....... -....|.++...++|. +.+|+..+-|.+++..+..........-..+ .
T Consensus 243 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~-----~-------------- 302 (781)
T 3v9f_A 243 TNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFI-----R-------------- 302 (781)
T ss_dssp EC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEE-----C--------------
T ss_pred EEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccc-----c--------------
Confidence 4322111 1123477888877775 5556665668888876553211000000000 0
Q ss_pred eEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCc
Q 001403 680 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 759 (1084)
Q Consensus 680 ~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~ 759 (1084)
+ . ..+.......|.++...++|. |-.++.++-+..++.....
T Consensus 303 --------------------------~-----~------~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~ 344 (781)
T 3v9f_A 303 --------------------------E-----G------DNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPT 344 (781)
T ss_dssp --------------------------B-----C------SSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCS
T ss_pred --------------------------C-----C------CCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCc
Confidence 0 0 000001345688888888887 5556655556666543221
Q ss_pred cCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEE---cCCCC
Q 001403 760 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI---MPPSP 836 (1084)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~---~~~~~ 836 (1084)
...+...... .....-....|.+++..++|.+.+...++.+..|+..+++..... .....
T Consensus 345 ------------~~~~~~~~~~-----~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 407 (781)
T 3v9f_A 345 ------------FHTWSYSPTQ-----MNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSN 407 (781)
T ss_dssp ------------CEEEC----C-----CCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCS
T ss_pred ------------ceeeccCccc-----cccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCc
Confidence 1111110000 000001345689999999888776665677889998765432211 12346
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec--ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 001403 837 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 914 (1084)
Q Consensus 837 ~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~--~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~ 914 (1084)
.|.+++..+ ++.+.+ |+.++-|..++..+++...... .....|.++...++|.+.+ |+. +-|..+|..+++...
T Consensus 408 ~v~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~ 483 (781)
T 3v9f_A 408 SVLCSLKDS-EGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIH 483 (781)
T ss_dssp BEEEEEECT-TSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCE
T ss_pred ceEEEEECC-CCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEe
Confidence 789999887 666555 7777779999988776433221 1346799999988877655 445 458999988765433
Q ss_pred eeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecC---CCCCEEEEEEccCCCEEEEEeCC
Q 001403 915 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVD 991 (1084)
Q Consensus 915 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~d 991 (1084)
.. ...........|.++...++|.+.+.+.++.|..||..+++... +... ....|.++...++|.+.+. +.+
T Consensus 484 ~~---~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~ 558 (781)
T 3v9f_A 484 HY---DTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLA-TGE 558 (781)
T ss_dssp EE---CTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEE-ETT
T ss_pred cc---cCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEE-ECC
Confidence 21 11111111246899999999998887765668889987665332 2211 1467899999999986664 457
Q ss_pred CcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCC
Q 001403 992 GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1053 (1084)
Q Consensus 992 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~ 1053 (1084)
|.|..||..+++.. .+....-++ ...|. ++..++ +| .|-.++..| |..++..
T Consensus 559 Glv~~~d~~~~~~~-~~~~~~gl~----~~~i~--~i~~d~-~g-~lW~~t~~G-l~~~~~~ 610 (781)
T 3v9f_A 559 GLVCFPSARNFDYQ-VFQRKEGLP----NTHIR--AISEDK-NG-NIWASTNTG-ISCYITS 610 (781)
T ss_dssp EEEEESCTTTCCCE-EECGGGTCS----CCCCC--EEEECS-SS-CEEEECSSC-EEEEETT
T ss_pred CceEEECCCCCcEE-EccccCCCC----CceEE--EEEECC-CC-CEEEEcCCc-eEEEECC
Confidence 76588998887643 332222222 22343 566665 34 455555555 6666654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5e-12 Score=134.56 Aligned_cols=240 Identities=10% Similarity=-0.057 Sum_probs=166.6
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 390 SVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 390 ~V~~v~fspdg~~la-s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
...+++++++|++++ +...++.|.+||..++.... ....+...+.+++++++|+ ++++.. ++.|.+||..++.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---LPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE---CCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce---EeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCce
Confidence 778899999999777 44678889999987654211 1123335678999999998 566555 8899999976654
Q ss_pred eeeEec-cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCe
Q 001403 469 RTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 547 (1084)
Q Consensus 469 ~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 547 (1084)
. ..+. .....+..+++.+ +|.++++...++.|.+|+..+.............+..++++++|+.+++... ++
T Consensus 99 ~-~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~ 171 (270)
T 1rwi_B 99 Q-TVLPFDGLNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NN 171 (270)
T ss_dssp C-EECCCCSCSSEEEEEECT--TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG----GT
T ss_pred E-eeeecCCcCCCcceEECC--CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC----CC
Confidence 3 3333 2335688888854 6677777778899999976554433322222335678999999986665432 45
Q ss_pred eEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC
Q 001403 548 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 627 (1084)
Q Consensus 548 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 627 (1084)
.|.+||..++.......... ..+..++++++|..+++...++.|.+|+..+..... ... .+...+..++++++|+
T Consensus 172 ~i~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~ 246 (270)
T 1rwi_B 172 RVVKLEAESNNQVVLPFTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRT 246 (270)
T ss_dssp EEEEECTTTCCEEECCCSSC---CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCC
T ss_pred EEEEEecCCCceEeecccCC---CCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCC
Confidence 69999988766544332222 568899999999777777778899999987654433 221 2223578999999999
Q ss_pred EEEEEECCCeEEEEEcCCCC
Q 001403 628 LLAVIANENRIKILETPESN 647 (1084)
Q Consensus 628 ~l~~~~~dg~i~iwd~~~~~ 647 (1084)
++++...++.|++++....+
T Consensus 247 l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 247 VYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEEGGGTEEEEECCCGGG
T ss_pred EEEEECCCCEEEEEcCCCcc
Confidence 88888889999999987653
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-11 Score=135.96 Aligned_cols=207 Identities=14% Similarity=0.070 Sum_probs=144.1
Q ss_pred ccEEEecCCCCEEEEEe---CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee
Q 001403 797 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 873 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~ 873 (1084)
...++++|||+++++++ ++.|.+.|+.+++.+.++..... ....|++.+.+++.+.||.+.+.+..+++....
T Consensus 179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp GGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred cceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 44678999999988875 37899999999999988874321 334442445666677788888888866654422
Q ss_pred ----ecccccCE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCc----cCCCCceEEEEccCCCEEE
Q 001403 874 ----LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM----TLAPSETHIQFHKDQTRFL 944 (1084)
Q Consensus 874 ----l~~h~~~V-~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~dg~~la 944 (1084)
+.....++ ..+.|++++..++..+..+.|.+.|+.................. ........++++||++.+.
T Consensus 255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rly 334 (426)
T 3c75_H 255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIY 334 (426)
T ss_dssp ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEE
T ss_pred eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEE
Confidence 21111221 23578999998888888899999999765432211111110000 0001233479999999887
Q ss_pred EEe-----------CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEEcCCCceeEEec
Q 001403 945 LVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 945 ~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
+.. .+.|.+.|+.+++.+..+..+ ....+++|+|||+ +|+++. .++.|.|+|+.+++.+.++.
T Consensus 335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~ 410 (426)
T 3c75_H 335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVD 410 (426)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EEecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEec
Confidence 742 357999999999999887653 3588999999999 888887 58999999999999998873
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-10 Score=124.07 Aligned_cols=279 Identities=10% Similarity=0.007 Sum_probs=190.4
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCE
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 411 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~ 411 (1084)
.....+.++++.++|+..++...+ +.|.+||.. +.... ..+..+...+.+++++++|+++++...++.
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~---------~~v~~~~~~-~~~~~--~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 84 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKA---------NKISSLDQS-GRIKE--FEVPTPDAKVMCLIVSSLGDIWFTENGANK 84 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTT---------TEEEEECTT-SCEEE--EECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred CCCCCcceeeECCCCCEEEEcCCC---------CeEEEECCC-CceEE--EECCCCCCcceeEEECCCCCEEEEecCCCe
Confidence 344588999999999988875434 789999987 33221 112334468999999999998887777888
Q ss_pred EEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceee-EeccCCCcEEEEeecccCC
Q 001403 412 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPHAKEN 490 (1084)
Q Consensus 412 v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~-~~~~h~~~v~~~~~~~~~~ 490 (1084)
|..||.. ++. .. ..+......+.++++.++|. ++++...++.|..+|.. ++... .+......+..+++. ++
T Consensus 85 v~~~d~~-g~~-~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d--~~ 156 (300)
T 2qc5_A 85 IGKLSKK-GGF-TE-YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG--SD 156 (300)
T ss_dssp EEEECTT-SCE-EE-EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC--TT
T ss_pred EEEECCC-CCe-EE-ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEEC--CC
Confidence 9999988 543 21 12223346789999999998 66766667899999987 65542 233345667888884 46
Q ss_pred CcEEEEEecCCeEEEEECCCCCceE-eecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee-eecccc
Q 001403 491 IHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQL 568 (1084)
Q Consensus 491 ~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~-~~~~~~ 568 (1084)
+.+.++...++.|..++. .++... ........+..+++.++|+..++... .+.|.+||. +++.... ....
T Consensus 157 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~~~~~-- 228 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISEYDIPTP-- 228 (300)
T ss_dssp SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEECSST--
T ss_pred CCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEEEECCCC--
Confidence 676666666788999988 333322 22233456889999999987665432 456999998 5554432 2222
Q ss_pred ccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 569 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 569 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
...+.+++++++++..++...++.|..||. +++.. .+........+.+++++++|+++++.. . .|..++.
T Consensus 229 -~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 229 -NARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp -TCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred -CCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 256889999999986666666799999998 45443 332222234578999999998665544 4 6666664
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.1e-11 Score=131.02 Aligned_cols=292 Identities=10% Similarity=0.012 Sum_probs=189.3
Q ss_pred CCCCEEEEEeeCCCCC-eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE----------CCCcEEEEEC
Q 001403 531 ANGRRLFSCGTSKEGE-SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDM 599 (1084)
Q Consensus 531 ~d~~~l~~~~~~~~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~ 599 (1084)
++++.+++........ +.|.++|..+++.+..+.... .+ .+.++||+++++++. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~---~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF---LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS---SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC---CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 6778777765421111 789999999999999988655 44 899999999998875 4678999999
Q ss_pred CCCeEEEEEcCCCC-----CCCcceEEEecCCCEEEEEEC--CCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceee
Q 001403 600 NKVQLLTTIDAGGG-----LPENPRICFNKNGTLLAVIAN--ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 672 (1084)
Q Consensus 600 ~~~~~~~~~~~~~~-----~~~v~~v~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~ 672 (1084)
.+++.+..+...+. ......++|+|||++++++.. ++.|.+.|+.+.+.+..+..... ....|.+...
T Consensus 157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~- 231 (426)
T 3c75_H 157 VTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTV- 231 (426)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTE-
T ss_pred CCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcE-
Confidence 99999988864310 113468999999999999874 57899999999987776653211 1111111100
Q ss_pred eeccCceeEecCCCCCCCCccceecccCccc-----cccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecC
Q 001403 673 AGIANGSVSVNEDPKEDVKPEISVEAENKSE-----VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 747 (1084)
Q Consensus 673 ~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~-----~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 747 (1084)
.+.+ +++|++++....++.+. +++.. .......+.+++++..++.....
T Consensus 232 ------~v~~----~~dG~~~~V~~~~~~v~~~~~~~~~v~----------------~~p~~~~~~~~~dg~~~~~~s~~ 285 (426)
T 3c75_H 232 ------FYMN----CRDGSLARVDFADGETKVTNTEVFHTE----------------DELLINHPAFSLRSGRLVWPTYT 285 (426)
T ss_dssp ------EEEE----ETTSSEEEEECCTTCCEEEECCCCSCT----------------TSCBCSCCEECTTTCEEEEEBTT
T ss_pred ------EEEE----cCCCCEEEEECCCCcEEEEeeeeeccC----------------CCceeeEeeecCCCCEEEEEeCC
Confidence 1111 23344333333333222 11111 01111235678888888887778
Q ss_pred CceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-----------CCe
Q 001403 748 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-----------GGV 816 (1084)
Q Consensus 748 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-----------dg~ 816 (1084)
+.+.+.|........ +..|.+.......... .......++++||++++.++. .+.
T Consensus 286 g~V~ViD~~~~~~~v---------~~~~~~~~~~~i~~g~-----~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~ 351 (426)
T 3c75_H 286 GKIFQADLTAEGATF---------RAPIEALTEAERADDW-----RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRF 351 (426)
T ss_dssp SEEEEEEECSSCEEE---------CCCEESSCTTTGGGTE-----EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEE
T ss_pred CcEEEEeccCCceEE---------eeeeeecccccccccc-----ccCCceeeEEcCCCCEEEEEecccccccccCCCCE
Confidence 888888865432100 0112211111000000 112233478999998877764 247
Q ss_pred EEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCc-EEEEEe-CCCeEEEEEcCCceeeeee
Q 001403 817 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGM-DDSTILIYNARSSEVISKL 874 (1084)
Q Consensus 817 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~la~g~-~dg~i~iwd~~~~~~~~~l 874 (1084)
|.++|+.+++.+.++... .....++|+| |++ ++++.. .++.|.++|+.+++.+.++
T Consensus 352 VsVID~~T~kvv~~I~vg-~~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 352 VVVLNAETGERINKIELG-HEIDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEETTTCCEEEEEEEE-EEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEEECC-CCcCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 999999999999988632 3578999999 777 888877 5899999999999999886
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.9e-10 Score=119.03 Aligned_cols=276 Identities=9% Similarity=0.062 Sum_probs=187.5
Q ss_pred cceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCC
Q 001403 726 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 805 (1084)
Q Consensus 726 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 805 (1084)
...+.+++++++|...++...++.+.+|+.. +.. ....+. .....+.+++++++
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~-----------------------~~~~~~--~~~~~~~~i~~~~~ 72 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI-----------------------KEFEVP--TPDAKVMCLIVSSL 72 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-----------------------EEEECS--STTCCEEEEEECTT
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce-----------------------EEEECC--CCCCcceeEEECCC
Confidence 4577899999999977776677888887643 211 111111 13356789999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCceeEE-EEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee-eecccccCEE
Q 001403 806 DAYLFSAS-GGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLEGHSKRVT 882 (1084)
Q Consensus 806 g~~l~~~s-dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~-~l~~h~~~V~ 882 (1084)
|.++++.. ++.|..||.. ++... .+......+.++++.+ +++++++...++.|..||.. ++... .+......+.
T Consensus 73 g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~ 149 (300)
T 2qc5_A 73 GDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA 149 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred CCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence 98777765 5889999988 55432 2222346789999999 78888877778899999987 65442 2333456789
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcce
Q 001403 883 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC 961 (1084)
Q Consensus 883 ~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~ 961 (1084)
++++.++|++.++...++.|..+|. +++... +... ... ..+..++++++|.+.++. ..+.|.+|+. +++.
T Consensus 150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~ 220 (300)
T 2qc5_A 150 FITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPLP-TNA---AAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI 220 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-STT---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred eEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeCC-CCC---CCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE
Confidence 9999999997777766788999998 444322 1111 111 257899999999877775 4568999998 5554
Q ss_pred eeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEE
Q 001403 962 LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1041 (1084)
Q Consensus 962 ~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~ 1041 (1084)
.......+...+.+++++++|+..++...++.|..|+. ++... .+. .+.. . -.+.+++.+| +|...++
T Consensus 221 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~----~~~~--~--~~~~~i~~~~-~g~l~v~- 288 (300)
T 2qc5_A 221 SEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ----LQTE--N--AEPHGITFGK-DGSVWFA- 288 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE----CCST--T--CCCCCEEECT-TSCEEEE-
T ss_pred EEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE----CCcc--C--CccceeEeCC-CCCEEEE-
Confidence 44333344567899999999997777666789999998 45544 221 1111 1 1244677888 4665544
Q ss_pred eCCCcEEEEcC
Q 001403 1042 LTNGEVYVIEP 1052 (1084)
Q Consensus 1042 ~~dg~v~vw~~ 1052 (1084)
+.. .|..+++
T Consensus 289 ~~~-~i~~~~p 298 (300)
T 2qc5_A 289 LKC-KIGKLNL 298 (300)
T ss_dssp CSS-EEEEEEE
T ss_pred ccC-ceEEeCC
Confidence 444 7777765
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-11 Score=152.19 Aligned_cols=253 Identities=12% Similarity=0.031 Sum_probs=161.6
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCE
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 411 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~ 411 (1084)
+|+..+..++|||||++||+++.+ .|.. ..+|++||+.++...... . +...+..++|||| +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~--~G~e--~~~i~v~dl~tg~~~~~~--~--~~~~~~~~~wspD-~~l~~~~~~~~ 230 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQD--GGSD--WRTVKFVGVADGKPLADE--L--KWVKFSGLAWLGN-DALLYSRFAEP 230 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEE--TTCS--EEEEEEEETTTCCEEEEE--E--EEEESCCCEESTT-SEEEEEECCCC
T ss_pred CCCEEEEeEEECCCCCEEEEEEcC--CCCc--eEEEEEEECCCCCCCCcc--C--CCceeccEEEECC-CEEEEEEecCc
Confidence 344478899999999999997654 2221 157999999987653221 1 1122357899999 99999876553
Q ss_pred --------------EEEEEccCCccccc-eeeeecccccEeEEEeecCCCcEEEEEEeC-----CCcEEEEECCCC--ce
Q 001403 412 --------------VQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DKTIKVWDAVTG--SR 469 (1084)
Q Consensus 412 --------------v~iwd~~~~~~~~~-~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-----d~~i~vwd~~~g--~~ 469 (1084)
|.+|++.++..... +.....+...+..+.|||||+. |+..+. ...|.+||+.++ .+
T Consensus 231 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l~~~d~~~~~~~~ 308 (741)
T 1yr2_A 231 KEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTVHVARVTNGKIGP 308 (741)
T ss_dssp --------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEEEEEEEETTEECC
T ss_pred ccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceEEEEECCCCCCcc
Confidence 88999987753211 1122233345889999999994 554443 348999999887 32
Q ss_pred eeEeccCCCcEEEEeecccCCCcEEEEEecC----CeEEEEECCCCC-c-eEeecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 470 TYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLG-A-RVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 470 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~-~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
...+..+...+....+ ++|..|+..+.+ +.|.+||+++.. . ...+..+...+..++++ ++.++++...
T Consensus 309 ~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~-- 382 (741)
T 1yr2_A 309 VTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIH-- 382 (741)
T ss_dssp CEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEE--
T ss_pred cEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEE--
Confidence 4556555555544432 355677766653 459999988742 2 33334444456677776 4455555543
Q ss_pred CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE----CCCcEEEEECCCCeE
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL 604 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~ 604 (1084)
++...|+++++. +.....+..+. ...+..+.++|+++.++... ..++|++||+.+++.
T Consensus 383 dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 383 DAKSQVLAFDLD-GKPAGAVSLPG--IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp TTEEEEEEEETT-SCEEEECBCSS--SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCEEEEEEEeCC-CCceeeccCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 334556666764 45555555432 25688899999988666432 357899999998873
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-10 Score=125.83 Aligned_cols=174 Identities=9% Similarity=0.058 Sum_probs=135.8
Q ss_pred CCccEEEecCCCCEEEEEeCCeEEEEEcCCce-----------eEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001403 795 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-----------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 863 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iw 863 (1084)
..+..+++++...++++++...+.+|++++.. ...... +.. |+.++| |+++|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 36899999999999999998888889986543 112222 445 999999 57888888 88999999
Q ss_pred EcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEE
Q 001403 864 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 943 (1084)
Q Consensus 864 d~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 943 (1084)
|+.+.........|...+.++.+.+.. +++++.||+|.+||+..+.... +. ..|++++|||+| ..
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---------~~---~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---------LA---QNVTSFDVTNSQ-LA 176 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---------EE---ESEEEEEECSSE-EE
T ss_pred EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---------cc---CCceEEEEcCCc-eE
Confidence 998866556666788889988877653 8889999999999999866422 11 169999999999 44
Q ss_pred EEEeCCeEEEEEcCCcce--eeEee-----c---CCCCCEEEEEEccCCCEEEEEe
Q 001403 944 LLVHETHLAIYEAEELTC--LKQWF-----P---ISSVPISQATFSCDCRMVFTSF 989 (1084)
Q Consensus 944 a~~~d~~i~vwd~~~~~~--~~~~~-----~---~h~~~v~~l~fs~dg~~l~t~~ 989 (1084)
+...||++++|+...++. ...+. . +|...|.+|.|.+++.+|++-+
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 446899999999887775 44431 1 4788999999999999988743
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-10 Score=125.80 Aligned_cols=246 Identities=8% Similarity=0.059 Sum_probs=163.9
Q ss_pred eEEEEEEecCCCeEEE-------eecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEE
Q 001403 728 KISRLTYNNGGQAIFA-------LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 800 (1084)
Q Consensus 728 ~i~~l~~s~~g~~l~~-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 800 (1084)
...+++|+++|..+++ ...++.|.+|+...++. ..+.. ....++...+.++
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~------------~~~~~----------~~~~~~~~~~~~i 76 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK------------TVICK----------PEVNGYGGIPAGC 76 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE------------EEEEC----------CEETTEECCEEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE------------EEEEe----------cccCCCCCCCceE
Confidence 4568899999986666 46677888876543221 00100 0000133568899
Q ss_pred EecCC-CCEEEEEeCCeEEEEEcCCceeEEE-EcC----CCCCeEEEEEcCCCCcEEEEEeCC---------------Ce
Q 001403 801 ALSKN-DAYLFSASGGVISLYIVMTFKTILT-IMP----PSPTATSLAFNPHDNNVIAIGMDD---------------ST 859 (1084)
Q Consensus 801 ~~s~d-g~~l~~~sdg~i~vwd~~~~~~~~~-~~~----~~~~i~~l~~s~~d~~~la~g~~d---------------g~ 859 (1084)
+++++ |+++++...+.|.+||.. ++.... ... ....+.++++++ +++++++...+ +.
T Consensus 77 ~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 154 (314)
T 1pjx_A 77 QCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGS 154 (314)
T ss_dssp EECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred EEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCe
Confidence 99999 776666656689999998 665433 221 123578999999 78887776655 57
Q ss_pred EEEEEcCCceeeeeecccccCEEEEEEc----CCCCEEEEE-eCCCcEEEEeCC-CCceeeeeeeecCCCCccCCCCceE
Q 001403 860 ILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILVSS-GGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETH 933 (1084)
Q Consensus 860 i~iwd~~~~~~~~~l~~h~~~V~~l~~s----pd~~~l~s~-s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 933 (1084)
|..|+.. ++... +..+......++|+ ||++.|..+ ..++.|.+||+. .+.......+....++. ...+..
T Consensus 155 l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~--~~~p~~ 230 (314)
T 1pjx_A 155 IYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH--EGGADG 230 (314)
T ss_dssp EEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS--SCEEEE
T ss_pred EEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC--CCCCCc
Confidence 7778765 55433 33344567889999 999765544 567899999987 44332222333222221 014678
Q ss_pred EEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcCCC
Q 001403 934 IQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS-FVDGTLSIHEASNL 1002 (1084)
Q Consensus 934 ~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~-~~dg~i~vwd~~~~ 1002 (1084)
++++++|.+.++. .++.|.+||..+++.+..+. .+...+.+++|++||++|+++ ..++.|..|++...
T Consensus 231 i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred eEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe-CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 9999999988875 67899999998787665533 455789999999999955544 45678999998753
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-10 Score=140.21 Aligned_cols=257 Identities=11% Similarity=0.070 Sum_probs=168.8
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH- 410 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg- 410 (1084)
+|...+..++|||||++||.+... +|.. ..+|+|||+.++...... +.+ .....++|+ ||+.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~--~G~~--~~~i~v~dl~tg~~~~~~--~~~--~k~~~~~Ws-Dg~~l~y~~~~~~ 196 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSL--AGSD--WREIHLMDVESKQPLETP--LKD--VKFSGISWL-GNEGFFYSSYDKP 196 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEEC--SSCC--EEEEEEEETTTCSEEEEE--EEE--EESCCCEEE-TTTEEEEEESSCC
T ss_pred CCcEEEEEEEECCCCCEEEEEEec--CCCc--eEEEEEEECCCCCCCccc--cCC--ceeccEEEe-CCCEEEEEEecCc
Confidence 456678899999999999985433 2221 178999999987643221 111 113568999 999999998774
Q ss_pred ------------EEEEEEccCCcccc-ceeeeec-ccccEeEEEeecCCCcEEEEEEe---CCCcEEEEECCCCc-eeeE
Q 001403 411 ------------IVQLYAYHGGSDAR-QQLEIDA-HVGNVNDLAFSAPCKQISVITCG---DDKTIKVWDAVTGS-RTYS 472 (1084)
Q Consensus 411 ------------~v~iwd~~~~~~~~-~~~~l~~-h~~~V~~l~~s~d~~~l~l~s~~---~d~~i~vwd~~~g~-~~~~ 472 (1084)
.|.+|++.++..-. .+..... |...+..+.|||||+.+ +++.+ .++.|.+||+.++. ....
T Consensus 197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEEECCCCCCceEE
Confidence 39999998875321 1112223 45567889999999963 33333 23589999998774 4556
Q ss_pred eccCCCcEEEEeecccCCCcEEEEEecC---CeEEEEECCCCCc--eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCe
Q 001403 473 FEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 547 (1084)
Q Consensus 473 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 547 (1084)
+..+....... +.+. ++.+++....+ +.|..+++++... ...+..+...+. .|+++++.|+..... ++..
T Consensus 276 l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~-~g~~ 350 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMV-DATA 350 (693)
T ss_dssp EECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEE-TTEE
T ss_pred EeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEE-CCee
Confidence 66666655554 3332 23444554443 5799999987654 233444444444 899999999887653 3456
Q ss_pred eEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC----CcEEEEECCCCeEEE
Q 001403 548 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNKVQLLT 606 (1084)
Q Consensus 548 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~ 606 (1084)
.|++||+..+.. ..+.... ...+..+.++++++.++....+ +.++.||+.+++...
T Consensus 351 ~l~~~d~~g~~~-~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~ 410 (693)
T 3iuj_A 351 RVEQFDYEGKRV-REVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISL 410 (693)
T ss_dssp EEEEECTTSCEE-EEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEE
T ss_pred EEEEEECCCCee-EEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEE
Confidence 799999885543 3443222 2457777888888877765544 889999998876543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.33 E-value=5.2e-10 Score=121.89 Aligned_cols=249 Identities=11% Similarity=0.060 Sum_probs=163.4
Q ss_pred ccCCCCceEEEEcCCCceeee-------ecccccCccccccceEEEEEcCCccccceee-eecCCCCCeEEEEEcCC-CC
Q 001403 331 IEGSSSPMSMDFHPVQHTLLL-------GLWDVNSGQKLFIRNFKVWDIGACSMLFKTA-LVRDPGVSVNRVVWSPD-GS 401 (1084)
Q Consensus 331 ~~h~~~V~~v~~spdg~~las-------~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~-~~~~h~~~V~~v~fspd-g~ 401 (1084)
...-..+.+++|+++|+++++ +..+ +.|.+||..++....... ...++...+.+++++++ |+
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~---------~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~ 84 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPA---------GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ 84 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEEC---------CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCC---------CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc
Confidence 434447889999999988877 4333 789999987654321110 01124467999999999 76
Q ss_pred EEEEEeCCCEEEEEEccCCccccc-eeeee-cccccEeEEEeecCCCcEEEEEEeCC---------------CcEEEEEC
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQ-QLEID-AHVGNVNDLAFSAPCKQISVITCGDD---------------KTIKVWDA 464 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~-~~~l~-~h~~~V~~l~~s~d~~~l~l~s~~~d---------------~~i~vwd~ 464 (1084)
++++.. .+.|.+||.+ ++.... ..... .....+.+++++++|+ ++++...+ +.|..||.
T Consensus 85 l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (314)
T 1pjx_A 85 LFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFTT 160 (314)
T ss_dssp EEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred EEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeEEEECC
Confidence 555544 4469999988 653221 10001 1224588999999998 56665544 56777876
Q ss_pred CCCceeeEeccCCCcEEEEeec--ccCCCcEEE-EEecCCeEEEEECC-CCCc-----eEeecCCC-CeEEEEEEcCCCC
Q 001403 465 VTGSRTYSFEGHGAPVYSLCPH--AKENIHFIF-SISVDGKIKAWLYD-SLGA-----RVDYDAPG-LGCTRMAYSANGR 534 (1084)
Q Consensus 465 ~~g~~~~~~~~h~~~v~~~~~~--~~~~~~~l~-s~s~dg~i~iwd~~-~~~~-----~~~~~~~~-~~i~~~~~s~d~~ 534 (1084)
. ++... +..+......++++ .+++++.++ +...++.|.+|+++ .+.. ...+..+. .....++++++|+
T Consensus 161 ~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~ 238 (314)
T 1pjx_A 161 D-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp T-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred C-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC
Confidence 5 55433 32333446777875 114665554 44567899999986 2221 12222232 5678899999998
Q ss_pred EEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEE-ECCCcEEEEECCC
Q 001403 535 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK 601 (1084)
Q Consensus 535 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~ 601 (1084)
..++... ++.|.+||..+++.+..+..+. ..+.+++|+|+++.|+++ ..++.|..|++..
T Consensus 239 l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~---~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 239 LLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEcC----CCEEEEEcCCCCcEeEEEeCCC---CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8777643 4569999998787777666554 678999999999966554 4568899998864
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5e-06 Score=98.14 Aligned_cols=531 Identities=9% Similarity=-0.028 Sum_probs=288.0
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEE
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 481 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~ 481 (1084)
+|+.+ ....|+..++++..... ...+. .-..+..++|.+.+.. ++++-..++.|..+++..+.....+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 45568999998654211 11122 2345789999997774 455555688999999875543333332223456
Q ss_pred EEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEee
Q 001403 482 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 561 (1084)
Q Consensus 482 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 561 (1084)
.+++.+. .+++.++-...+.|.+.+++.................+++.|....|+..... ....|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g--~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG--GKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC--CCCEEEEEeCCCCceEE
Confidence 7777543 33555666667889999987655444443444567899999976666665421 14568888776544333
Q ss_pred eeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEE
Q 001403 562 TYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 640 (1084)
Q Consensus 562 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 640 (1084)
.... ......++++++++.|+.+. ..+.|...|+..... ..+... ......+++.. +..+++-...+.|..
T Consensus 161 l~~~----~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 161 LVPN----VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIER 232 (628)
T ss_dssp EECS----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred EECC----CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEE
Confidence 3322 25688999999877777765 567899999876444 233221 22345777765 444444445788999
Q ss_pred EEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeecc
Q 001403 641 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 720 (1084)
Q Consensus 641 wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~ 720 (1084)
.|..+++....+.........+.+....... + .+.....++ +- ..+.+-. +........
T Consensus 233 ~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~--~-------~n~C~~~ng------~C-~~~C~~~-----~~~~~~C~C 291 (628)
T 4a0p_A 233 ANKTSGQNRTIIQGHLDYVMDILVFHSSRQS--G-------WNECASSNG------HC-SHLCLAV-----PVGGFVCGC 291 (628)
T ss_dssp EETTTCCSCEEEECSCCSCCEEEEECGGGSC--C-------CCTTTTTGG------GC-SSEEEEE-----TTTEEEEEC
T ss_pred EECCCCCceEEEecCCCCcceeeeeeecccc--c-------ceEeccCCC------Cc-chhhhcC-----CCCCeeEEc
Confidence 9987776555554333323333222110000 0 000000000 00 0000000 000000000
Q ss_pred CC--ccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCcc
Q 001403 721 PS--KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 798 (1084)
Q Consensus 721 ~~--~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 798 (1084)
+. ........+. +....++.+. ...|+-..+. ..... ...++. ..-..+.
T Consensus 292 ~~g~~l~~d~~~C~---~~~~~Ll~s~-~~~i~~i~l~----------------------~~~~~-~~~l~~-~~~~~~~ 343 (628)
T 4a0p_A 292 PAHYSLNADNRTCS---APTTFLLFSQ-KSAINRMVID----------------------EQQSP-DIILPI-HSLRNVR 343 (628)
T ss_dssp STTCEECTTSSCEE---CCSSEEEEEE-TTEEEEECCC----------------------TTCCC-CEECCC-TTCSCEE
T ss_pred CCCcEecccCCcCc---cccceeeeec-cceEEEEecc----------------------cccCc-eEEEEe-hhcCCce
Confidence 00 0000000111 1122222222 2223222111 10000 000110 1234577
Q ss_pred EEEecCCCCEEEEEe--CCeEEEEEcCCceeEEEEcC------CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee
Q 001403 799 CFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 870 (1084)
Q Consensus 799 ~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~ 870 (1084)
+++|.+.+..|..+. .+.|..+++........+.. ....+..+|+....+++..+-+..+.|.+.++. |+.
T Consensus 344 ~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~ 422 (628)
T 4a0p_A 344 AIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRS 422 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCE
T ss_pred EEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCe
Confidence 899999888887776 47888888764433333332 234678999998445566666678899999986 554
Q ss_pred eeee-cccccCEEEEEEcC-CCCEEEEEeCCC--cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE
Q 001403 871 ISKL-EGHSKRVTGLVFSD-ALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 946 (1084)
Q Consensus 871 ~~~l-~~h~~~V~~l~~sp-d~~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 946 (1084)
...+ ........+|++.| .|.++.+-.... .|...+++...... .+.. .. .....+++++++..|..+
T Consensus 423 ~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~--l~~~---~l---~~P~gla~D~~~~~LYw~ 494 (628)
T 4a0p_A 423 VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREV--LFFS---GL---SKPIALALDSRLGKLFWA 494 (628)
T ss_dssp EEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEE--EECS---SC---SCEEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEE--EEec---cC---CCccEEEEeCCCCEEEEE
Confidence 4343 33446789999999 555555533332 56666676533211 1211 11 256899999998888775
Q ss_pred --eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEE
Q 001403 947 --HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1007 (1084)
Q Consensus 947 --~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~ 1007 (1084)
..+.|...++. |.....+.........++++.. +...++-...+.|...|..+|+....
T Consensus 495 D~~~~~I~~~~~d-G~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~ 555 (628)
T 4a0p_A 495 DSDLRRIESSDLS-GANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTK 555 (628)
T ss_dssp ETTTTEEEEEETT-SCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEE
T ss_pred eCCCCEEEEEeCC-CCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEE
Confidence 44789999985 4444444433344567777654 45555555667888888887765433
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.31 E-value=8.5e-10 Score=118.87 Aligned_cols=229 Identities=10% Similarity=0.052 Sum_probs=150.5
Q ss_pred eEEEEEEecCCCeEEEe-ecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCC
Q 001403 728 KISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 806 (1084)
Q Consensus 728 ~i~~l~~s~~g~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 806 (1084)
-.....|++++..++.. ..++.|..|+...+ . ..... ....+.+++++++|
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~----------------------~-~~~~~-----~~~~~~~i~~~~dG 65 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTK----------------------Q-VQRVT-----MDAPVSSVALRQSG 65 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTC----------------------C-EEEEE-----CSSCEEEEEEBTTS
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCC----------------------c-EEEEe-----CCCceEEEEECCCC
Confidence 34578899966555544 44677777764432 2 11111 24568899999999
Q ss_pred CEEEEEeCCeEEEEEcCCceeEEEEcC----CCCCeEEEEEcCCCCcEEEEEeCC---------CeEEEEEcCC-ceeee
Q 001403 807 AYLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARS-SEVIS 872 (1084)
Q Consensus 807 ~~l~~~sdg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~s~~d~~~la~g~~d---------g~i~iwd~~~-~~~~~ 872 (1084)
+++++ .++.|.+||..+++....... ....+..++++| +|+++++...+ ..-.||.+.. ++. .
T Consensus 66 ~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~ 142 (297)
T 3g4e_A 66 GYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-K 142 (297)
T ss_dssp SEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-E
T ss_pred CEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCE-E
Confidence 95554 578899999988775433322 123578999999 78877654321 2234454443 333 2
Q ss_pred eecccccCEEEEEEcCCCCEEE-EEeCCCcEEEEeC--CCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eC
Q 001403 873 KLEGHSKRVTGLVFSDALNILV-SSGGDAQIFVWDV--DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 948 (1084)
Q Consensus 873 ~l~~h~~~V~~l~~spd~~~l~-s~s~dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d 948 (1084)
.+..+......++|+||++.|. +.+.++.|.+|++ .++.......+....... ..+..++++++|.+.++. ..
T Consensus 143 ~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 143 KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETT
T ss_pred EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCC
Confidence 3333445678999999998764 5556788999997 455543333333322211 246789999999887775 56
Q ss_pred CeEEEEEcCCcceeeEeecCCCCCEEEEEEc-cCCCEEEEEeCC
Q 001403 949 THLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVD 991 (1084)
Q Consensus 949 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~~d 991 (1084)
+.|.+||..+|+.+..+. .+...+++++|+ ||++.|++++..
T Consensus 220 ~~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp TEEEEECTTTCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred CEEEEEcCCCceEEEEEE-CCCCCceEEEEeCCCCCEEEEEcCC
Confidence 789999999899877754 345689999998 898887766643
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-09 Score=123.59 Aligned_cols=248 Identities=10% Similarity=-0.001 Sum_probs=163.9
Q ss_pred CCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCceee
Q 001403 795 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI 871 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg--~i~iwd~~~~~~~ 871 (1084)
.....++++++|+++++.. ++.|++||..+++........ .... ++|++ +++.|+++..++ .|.+|+..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 3577899999999666665 589999999988776655543 2333 99999 788888888766 8999998766543
Q ss_pred eee----cccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCce-EEEEccCCCEEEEE
Q 001403 872 SKL----EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET-HIQFHKDQTRFLLV 946 (1084)
Q Consensus 872 ~~l----~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~dg~~la~~ 946 (1084)
..+ ..+...+.+++++|++..|..+..++.|+.||..++......... ..+... .... .++|+|++..|.++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~--~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLG--TNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCC--CSSCCEEEEETTTTEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCC--CCccccEEEeCCCCEEEEE
Confidence 333 224566788999995555555777889999999876532211110 111111 0113 89999965544443
Q ss_pred --eCCeEEEEEcCCcceeeEeecCC---------------CCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeEEe
Q 001403 947 --HETHLAIYEAEELTCLKQWFPIS---------------SVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEVQCRI 1008 (1084)
Q Consensus 947 --~d~~i~vwd~~~~~~~~~~~~~h---------------~~~v~~l~fs~dg~~l~t~~-~dg~i~vwd~~~~~~~~~~ 1008 (1084)
.++.|+.|+.... +..+. ++ -.....++|+++|+++++-+ .++.|+.|++.+|.+....
T Consensus 285 d~~~~~I~~~~~~g~--~~~~~-g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE--CEWFC-GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp ETTTTEEEEECTTCC--EEEEE-ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred eCCCCEEEEEecCCC--EEEEE-eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 5678999987633 22221 22 13478999999999888777 7899999998888754332
Q ss_pred cccc---ccCCC-CcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcC
Q 001403 1009 LSTA---YLRPT-TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1052 (1084)
Q Consensus 1009 ~~~~---~~~~~-~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~ 1052 (1084)
.... +.... ....--.|..++++|+ +.++++-..++.|+.+.+
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence 2100 00000 0001135788999994 778888888888888765
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.6e-10 Score=124.54 Aligned_cols=199 Identities=11% Similarity=-0.008 Sum_probs=128.4
Q ss_pred ccEEEecCCCCEEEEEe---CCeEEE--EEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC----
Q 001403 797 VPCFALSKNDAYLFSAS---GGVISL--YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---- 867 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~s---dg~i~v--wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~---- 867 (1084)
...++++|||+++++++ ++.+.+ +|+.+ +.++..... ..+.|++.+.+++.+.||.+.+.++.+
T Consensus 126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~ 198 (368)
T 1mda_H 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp TTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred cceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence 44678889998888876 356888 88877 444432111 223453455666677888888889887
Q ss_pred -ceeeee----ecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCC----CccCCCCceEEEEcc
Q 001403 868 -SEVISK----LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG----VMTLAPSETHIQFHK 938 (1084)
Q Consensus 868 -~~~~~~----l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~ 938 (1084)
++.... +.-...+. + ++++..++..+. +.|.+.|+.+........+..... ..........++|+|
T Consensus 199 ~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~ 273 (368)
T 1mda_H 199 AGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK 273 (368)
T ss_dssp CEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred CCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC
Confidence 554321 11122333 3 666777666667 999999997643221111111100 000001223378999
Q ss_pred CCCEEEEE-e-C--------CeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCE-EEEEe-CCCcEEEEEcCCCceeE
Q 001403 939 DQTRFLLV-H-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM-VFTSF-VDGTLSIHEASNLEVQC 1006 (1084)
Q Consensus 939 dg~~la~~-~-d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~-l~t~~-~dg~i~vwd~~~~~~~~ 1006 (1084)
|++.+.++ . . +.+.++|+.+++.+..+..+. ...+++|++||++ +++.. .++.|.++|+.+++.+.
T Consensus 274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 99988874 3 2 357799999999888765443 6889999999984 55555 58999999999999998
Q ss_pred Eec
Q 001403 1007 RIL 1009 (1084)
Q Consensus 1007 ~~~ 1009 (1084)
++.
T Consensus 352 ~I~ 354 (368)
T 1mda_H 352 SVE 354 (368)
T ss_dssp ECC
T ss_pred EEE
Confidence 876
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.28 E-value=2.9e-09 Score=114.67 Aligned_cols=233 Identities=12% Similarity=0.018 Sum_probs=156.3
Q ss_pred CCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC
Q 001403 387 PGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 465 (1084)
Q Consensus 387 h~~~V~~v~fspdg~-~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~ 465 (1084)
+..-..+..|+|++. ++++...++.|..||..+++.. .+ .....+.+++++++|+ ++++. ++.|.+||.+
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~-~~~~~~~~i~~~~dG~--l~v~~--~~~l~~~d~~ 81 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ----RV-TMDAPVSSVALRQSGG--YVATI--GTKFCALNWK 81 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----EE-ECSSCEEEEEEBTTSS--EEEEE--TTEEEEEETT
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE----EE-eCCCceEEEEECCCCC--EEEEE--CCeEEEEECC
Confidence 334556789999655 5555566889999999987531 12 3456799999999999 45543 5689999998
Q ss_pred CCceeeEecc----CCCcEEEEeecccCCCcEEEEEecC---------CeEEEEECCCCCceEeecCCCCeEEEEEEcCC
Q 001403 466 TGSRTYSFEG----HGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN 532 (1084)
Q Consensus 466 ~g~~~~~~~~----h~~~v~~~~~~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d 532 (1084)
+++....... ....+..+++. ++|.++++.... ..-.+|.++.................++|+||
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d--~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVD--PAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLD 159 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEEC--TTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTT
T ss_pred CCcEEEEEecCCCCCCCCCCCEEEC--CCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCC
Confidence 8865432221 12357788884 467766654332 33456665543333333223335678999999
Q ss_pred CCEEEEEeeCCCCCeeEEEecC--CCceEe--eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 001403 533 GRRLFSCGTSKEGESFLVEWNE--SEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 608 (1084)
Q Consensus 533 ~~~l~~~~~~~~~~~~i~~wd~--~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 608 (1084)
++.|+.+.. ..+.|.+|++ .++... +.+.........+..++++++|+..++....+.|.+||..+++.+..+
T Consensus 160 g~~lyv~~~---~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 160 HKIFYYIDS---LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp SCEEEEEEG---GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred CCEEEEecC---CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEE
Confidence 998876653 2456899986 455432 122111111256788999999988888888889999999999999888
Q ss_pred cCCCCCCCcceEEEe-cCCCEEEEEECC
Q 001403 609 DAGGGLPENPRICFN-KNGTLLAVIANE 635 (1084)
Q Consensus 609 ~~~~~~~~v~~v~~s-~~~~~l~~~~~d 635 (1084)
..+. ..+.+++|. |+++.|.+++..
T Consensus 237 ~~p~--~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 237 KLPV--DKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp ECSS--SBEEEEEEESGGGCEEEEEEBC
T ss_pred ECCC--CCceEEEEeCCCCCEEEEEcCC
Confidence 7653 347899998 888887776653
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.8e-10 Score=138.30 Aligned_cols=245 Identities=9% Similarity=0.054 Sum_probs=161.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-----CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCC---
Q 001403 386 DPGVSVNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--- 457 (1084)
Q Consensus 386 ~h~~~V~~v~fspdg~~las~~-----~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~--- 457 (1084)
+|...+..++|||||++||.+. ...+|++||+.+|+.+.. .+ +......++|+ ||+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~--~~~k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PL--KDVKFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EE--EEEESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--cc--CCceeccEEEe-CCC--EEEEEEecCccc
Confidence 3566788999999999999653 235799999999975431 11 11113678999 999 566665553
Q ss_pred ----------cEEEEECCCCce----eeEecc-CCCcEEEEeecccCCCcEEEEEec----CCeEEEEECCCCC-ceEee
Q 001403 458 ----------TIKVWDAVTGSR----TYSFEG-HGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-ARVDY 517 (1084)
Q Consensus 458 ----------~i~vwd~~~g~~----~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~----dg~i~iwd~~~~~-~~~~~ 517 (1084)
.|++|++.++.. +..... |...+.++.+ ++||++|+.... +..|.++|+++.. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATV--TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEE--CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEE--cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 499999987753 333343 4555677778 557777755433 2479999998764 33444
Q ss_pred cCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE--eeeeeccccccCceEEEEEcCCCCEEEEEECCC---
Q 001403 518 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--- 592 (1084)
Q Consensus 518 ~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--- 592 (1084)
..+....... ++++|..|+..+........|..+|+.++.. ...+..+. ..+. .|++++++|+....++
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER---QQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---SSCE--EEEEETTEEEEEEEETTEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC---CCEE--EEEEECCEEEEEEEECCee
Confidence 4444444444 6788888877665433357899999988654 23444444 3343 8899999888766443
Q ss_pred cEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC----CeEEEEEcCCCC
Q 001403 593 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----NRIKILETPESN 647 (1084)
Q Consensus 593 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----g~i~iwd~~~~~ 647 (1084)
.|++|++..+ ....+..... ..+..+.+++++..++....+ +.+..||+.+++
T Consensus 351 ~l~~~d~~g~-~~~~l~~p~~-~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 351 RVEQFDYEGK-RVREVALPGL-GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEECTTSC-EEEEECCSSS-SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEECCCC-eeEEeecCCC-ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 6889998754 4455543321 235566677888877766554 789999987764
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-10 Score=127.70 Aligned_cols=271 Identities=11% Similarity=0.028 Sum_probs=173.0
Q ss_pred CCceEEEEcCCCceeeee-cccccCccccccceEEEEEcCCcccc-cee--eeecCCCCCeEEEEEcCCCCEEEEEeC--
Q 001403 335 SSPMSMDFHPVQHTLLLG-LWDVNSGQKLFIRNFKVWDIGACSML-FKT--ALVRDPGVSVNRVVWSPDGSLLGVAYS-- 408 (1084)
Q Consensus 335 ~~V~~v~~spdg~~las~-~~d~~sg~~~~~~~v~iwd~~~~~~~-~~~--~~~~~h~~~V~~v~fspdg~~las~~~-- 408 (1084)
..+..++++|||+++++. .|+ .+.++||.+.++... +.. ....+|-..+..++|+++|+++++-..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~--------~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~ 88 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFY--------QPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQ 88 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGG--------CCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHH
T ss_pred CCcceEEECCCCCEEEEeCCCC--------CCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCC
Confidence 589999999999998884 333 022455555432211 100 012245678999999999987666543
Q ss_pred ---CCEEEEEEccCCccccceeeee----cccccEeEEEeecCCCcEEEEEEe---CCCcEEEEECCCCceeeEeccCCC
Q 001403 409 ---KHIVQLYAYHGGSDARQQLEID----AHVGNVNDLAFSAPCKQISVITCG---DDKTIKVWDAVTGSRTYSFEGHGA 478 (1084)
Q Consensus 409 ---dg~v~iwd~~~~~~~~~~~~l~----~h~~~V~~l~~s~d~~~l~l~s~~---~d~~i~vwd~~~g~~~~~~~~h~~ 478 (1084)
++.|.+||+.+++.++.+ .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.+.+|..
T Consensus 89 ~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~ 166 (343)
T 2qe8_A 89 SKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARVLQGYPG 166 (343)
T ss_dssp HTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred cCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence 578999999988754422 221 12345689999987653 455555 678999999999987777765532
Q ss_pred cEE-EEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCC--
Q 001403 479 PVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-- 555 (1084)
Q Consensus 479 ~v~-~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~-- 555 (1084)
... ...+. .+|..+.+.+.+|.++.|. ..+..++++|||+.|+.+... ...++.++..
T Consensus 167 ~~~~~~~~~--~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~~~~~~~ 227 (343)
T 2qe8_A 167 IAPEDIDLV--IDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYRIKSADL 227 (343)
T ss_dssp TSCCSCCCE--ETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEEEEHHHH
T ss_pred cccccccee--ECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEEEEHHHh
Confidence 111 02222 2456677777788876663 145789999999999887642 2245555432
Q ss_pred -Cce-----Eee--eeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC
Q 001403 556 -EGA-----IKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 627 (1084)
Q Consensus 556 -~~~-----~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 627 (1084)
.+. ... ...++. .....++++++|..+++...++.|.+||..+++........ .......++|.+++.
T Consensus 228 ~~~~~~~~~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~~~g~ 303 (343)
T 2qe8_A 228 SNLQLTDAELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFGSDGY 303 (343)
T ss_dssp TCTTCCHHHHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEECTTSC
T ss_pred cCCCCChhhhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEECCCCc
Confidence 110 000 111222 34567899999998888888999999999667654443321 223467899999988
Q ss_pred EEEEEECCCeE
Q 001403 628 LLAVIANENRI 638 (1084)
Q Consensus 628 ~l~~~~~dg~i 638 (1084)
++++....+.+
T Consensus 304 l~v~~~~~~~~ 314 (343)
T 2qe8_A 304 LYFDCNQLHHS 314 (343)
T ss_dssp EEEEECCGGGS
T ss_pred EEEEeCccccc
Confidence 77776654433
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-10 Score=126.04 Aligned_cols=273 Identities=7% Similarity=-0.003 Sum_probs=176.6
Q ss_pred ceEEEEEEecCCCeEEEeec--CCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC
Q 001403 727 NKISRLTYNNGGQAIFALAS--NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 804 (1084)
Q Consensus 727 ~~i~~l~~s~~g~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 804 (1084)
..+..++++++|+.+++... ++.+++|.+..+. . .-|. +.. .....+-..+..+++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~------~------~~~p--~~~------~~~~~~~~~p~gv~~d~ 76 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG------L------IPFP--PQS------GNAIITFDTVLGIKSDG 76 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE------E------EESC--CCC------SSCCCCCSCEEEEEECS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC------e------ecCC--Ccc------cCcccceeEeeEEEEcC
Confidence 46789999999998777542 3436677654211 0 1110 000 00112556789999999
Q ss_pred CCCEEEEEe------CCeEEEEEcCCceeEEEEcCC------CCCeEEEEEcCCCCcEEEEEe---CCCeEEEEEcCCce
Q 001403 805 NDAYLFSAS------GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGM---DDSTILIYNARSSE 869 (1084)
Q Consensus 805 dg~~l~~~s------dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~la~g~---~dg~i~iwd~~~~~ 869 (1084)
+|+++++-. ++.|.+||+.+++.+..+..+ ...+..++++++++.++++.. .++.|.+||+.+++
T Consensus 77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 998666543 378999999999977766532 235689999984455555555 67899999999988
Q ss_pred eeeeecccccCEE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEe-
Q 001403 870 VISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH- 947 (1084)
Q Consensus 870 ~~~~l~~h~~~V~-~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~- 947 (1084)
....+.+|..... ...++++|..+.+.+.+++++.|.. .+..++|+|||+.|.++.
T Consensus 157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 157 AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEES
T ss_pred EEEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeC
Confidence 7777766533111 1456667888888888888766531 256799999999888853
Q ss_pred C-CeEEEEEcCC---c-----ceeeE-eecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCC
Q 001403 948 E-THLAIYEAEE---L-----TCLKQ-WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1017 (1084)
Q Consensus 948 d-~~i~vwd~~~---~-----~~~~~-~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1017 (1084)
. +.+..++... + +.... ...++......++++++|.++++...++.|.+||..+|+...... .+
T Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~-- 288 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DE-- 288 (343)
T ss_dssp SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CG--
T ss_pred CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CC--
Confidence 3 3455554321 1 00000 011234456789999999999999899999999996676532222 01
Q ss_pred CcccceeeeEEEECCCCCCEEEEEeCCCcEEEEc
Q 001403 1018 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1051 (1084)
Q Consensus 1018 ~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~ 1051 (1084)
...++..++++| |+.++++....+.+.+|.
T Consensus 289 ---~~~~p~~va~~~-~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 289 ---KLSWTDSFNFGS-DGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp ---GGSCEEEEEECT-TSCEEEEECCGGGSGGGB
T ss_pred ---ceecCCeeEECC-CCcEEEEeCccccccccc
Confidence 124567889998 578888877665554443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-09 Score=119.58 Aligned_cols=241 Identities=9% Similarity=0.054 Sum_probs=162.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCC--cEEEEECCC
Q 001403 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVT 466 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~--~i~vwd~~~ 466 (1084)
.....++|+|+|+++++...++.|++||.+++.... .... ..... ++|+++++ .|+.+..++ .|.+|+..+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~---~~~~-~~~~~-ia~~~~g~--~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT---VHPG-FKGGK-PAVTKDKQ--RVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE---EEET-CCBCB-CEECTTSS--EEEEEBSSTTCEEEEEEGGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE---eecc-CCCCc-eeEecCCC--cEEEEecCCCceEEEEEcCC
Confidence 468899999999988887778999999999875432 1222 22333 99999999 667666655 799999877
Q ss_pred CceeeEe----ccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEe----ecCCCCeE--EEEEEcCCCCEE
Q 001403 467 GSRTYSF----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLGC--TRMAYSANGRRL 536 (1084)
Q Consensus 467 g~~~~~~----~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~~~i--~~~~~s~d~~~l 536 (1084)
+.....+ ......+.++++++. ++ .|+.+..++.|+.||.+....... .......- ..++|+|++..|
T Consensus 204 ~~~~~~~g~~~~~~~~~p~~iav~p~-~g-~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 204 GWAPTRIGQLGSTFSGKIGAVALDET-EE-WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp TTCEEEEEECCTTSCSCCCBCEECTT-SS-EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred CceeEEeeeccchhcCCcEEEEEeCC-CC-eEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 6654444 224556778888542 33 455577789999999987654332 22221112 289999976666
Q ss_pred EEEeeCCCCCeeEEEecCCCceEeeeeeccc------------cccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCe
Q 001403 537 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQ------------LQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ 603 (1084)
Q Consensus 537 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~ 603 (1084)
+.+.. ..+.|+.|+.... +..+.+.. ..-.....++++++++.+++-+ .++.|+.|+..++.
T Consensus 282 yv~d~---~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 282 YMSDQ---NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp EEEET---TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred EEEeC---CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 65542 3667999987643 22332221 0013478999999999777777 88999999988887
Q ss_pred EEEEEcCCC------------CCCCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 604 LLTTIDAGG------------GLPENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 604 ~~~~~~~~~------------~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
......... .......++++++|.++++-..++.|+.+++
T Consensus 357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 544332100 1223578999999888877777888887765
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=4.7e-09 Score=126.05 Aligned_cols=228 Identities=14% Similarity=0.132 Sum_probs=153.2
Q ss_pred CCeEEEEEcCCceeEEEEcCCCCC--------------------------------eEEEEEcCCCCcEEEEEeCCC---
Q 001403 814 GGVISLYIVMTFKTILTIMPPSPT--------------------------------ATSLAFNPHDNNVIAIGMDDS--- 858 (1084)
Q Consensus 814 dg~i~vwd~~~~~~~~~~~~~~~~--------------------------------i~~l~~s~~d~~~la~g~~dg--- 858 (1084)
++.|+.+|..+|+.+..+...... ...++++| ++.+|++++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 577888888888887766532211 13578888 677888887664
Q ss_pred ----------------eEEEEEcCCceeeeeecc--cc-------cCEEEEEEcCCC---CEEEEEeCCCcEEEEeCCCC
Q 001403 859 ----------------TILIYNARSSEVISKLEG--HS-------KRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGW 910 (1084)
Q Consensus 859 ----------------~i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~spd~---~~l~s~s~dg~I~iwd~~~~ 910 (1084)
.|..+|..+|+.+..++. |. ....-+....|| ..++.++.+|.|+++|..+|
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 599999999999877653 31 122333444578 68999999999999999998
Q ss_pred ceeeeeeeecCC--------CC------------c-----cCC--CCceEEEEccCCCEEEEE-eC--------------
Q 001403 911 GIQTCRSLQTPD--------GV------------M-----TLA--PSETHIQFHKDQTRFLLV-HE-------------- 948 (1084)
Q Consensus 911 ~~~~~~~~~~~~--------~~------------~-----~~~--~~v~~~~~s~dg~~la~~-~d-------------- 948 (1084)
+......+.... +. . ... ..-..++|+|++.++.+. .+
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 865432211000 00 0 000 001367899999888773 21
Q ss_pred -----------------------------CeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001403 949 -----------------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 999 (1084)
Q Consensus 949 -----------------------------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~ 999 (1084)
+.|..||+.+|+.+.+... ..++....++.+|.++++++.||.+++||+
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH--VSPWNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC--CCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 6799999999998877543 345555667788889999999999999999
Q ss_pred CCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEE-EEeC----------------CCcEEEEcCCC
Q 001403 1000 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA-VGLT----------------NGEVYVIEPNE 1054 (1084)
Q Consensus 1000 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~-~~~~----------------dg~v~vw~~~~ 1054 (1084)
.+|+.+.++.... + +...-+.|.+ ||..++ +.+. .+.+.+|.+..
T Consensus 506 ~tG~~lw~~~~~~----~-----~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 506 ATGEKLWEAPTGT----G-----VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp TTCCEEEEEECSS----C-----CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCCceeeeeeCCC----C-----cccCCEEEEe-CCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 9999998887322 1 2222345544 465444 3322 47889998863
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-08 Score=111.06 Aligned_cols=211 Identities=9% Similarity=0.042 Sum_probs=129.3
Q ss_pred CCeEEEEEcCCceeEEEEcCCCCCe-----EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccC----EEE-
Q 001403 814 GGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR----VTG- 883 (1084)
Q Consensus 814 dg~i~vwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~----V~~- 883 (1084)
++.+..+|..+|+.+.......... ...... + ..+++++.++.|..+|..+|+.+......... +..
T Consensus 152 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 228 (376)
T 3q7m_A 152 NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRL 228 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC----------
T ss_pred CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccc
Confidence 5677777777777766654332111 222232 2 36777888999999999999988766532110 000
Q ss_pred --EEEcC--CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCc
Q 001403 884 --LVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 959 (1084)
Q Consensus 884 --l~~sp--d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~ 959 (1084)
+.-+| .+..+..++.++.|..+|..+++..-... . + ....+... ++..++...++.|..+|..+|
T Consensus 229 ~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~---~-~------~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 229 SDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE---L-G------SVNDFIVD-GNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp -CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC---C-C------CEEEEEEE-TTEEEEEETTCCEEEEETTTC
T ss_pred cccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc---C-C------CCCCceEE-CCEEEEEcCCCeEEEEECCCC
Confidence 11111 24667778889999999999887443211 1 1 12333332 444444467789999999999
Q ss_pred ceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEE
Q 001403 960 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1039 (1084)
Q Consensus 960 ~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~ 1039 (1084)
+.+..........+..... .+..|++++.+|.|.++|..+|+.+.+..... ..+... .... +..|.
T Consensus 298 ~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~--------~~~~~~-~~~~---~~~l~ 363 (376)
T 3q7m_A 298 VTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDS--------SGFQTE-PVAA---DGKLL 363 (376)
T ss_dssp CEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCT--------TCBCSC-CEEE---TTEEE
T ss_pred cEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCC--------CcceeC-CEEE---CCEEE
Confidence 9877644222222333333 25678888899999999999999987765211 112111 1112 46888
Q ss_pred EEeCCCcEEEEcC
Q 001403 1040 VGLTNGEVYVIEP 1052 (1084)
Q Consensus 1040 ~~~~dg~v~vw~~ 1052 (1084)
+++.+|.|+.|+.
T Consensus 364 v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 364 IQAKDGTVYSITR 376 (376)
T ss_dssp EEBTTSCEEEEEC
T ss_pred EEeCCCEEEEEeC
Confidence 9999999999873
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-05 Score=94.73 Aligned_cols=518 Identities=8% Similarity=-0.017 Sum_probs=268.9
Q ss_pred CCEEEEEEccCCc-cccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce-eeEeccCCCcEEEEeec
Q 001403 409 KHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPH 486 (1084)
Q Consensus 409 dg~v~iwd~~~~~-~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~-~~~~~~h~~~v~~~~~~ 486 (1084)
...|+..++.+.. ... .+.........++|++.+.. ++++-...+.|..+++..... ...+..--.....+++.
T Consensus 17 ~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD 92 (619)
T 3s94_A 17 RRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 92 (619)
T ss_dssp SSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEE
T ss_pred cccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEE
Confidence 4457777777542 111 12223345779999997774 344445577899999875532 22233223567888885
Q ss_pred ccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecc
Q 001403 487 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 566 (1084)
Q Consensus 487 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 566 (1084)
+. ++.+.++-...+.|.+.+++.................+++.|.+..|+..... ....|...++............
T Consensus 93 ~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~~~l~~~~ 169 (619)
T 3s94_A 93 WL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINSE 169 (619)
T ss_dssp TT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECSS
T ss_pred ec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCceEEEEeCC
Confidence 43 33566666677899999988655444443444456789999987776665421 1345776666533222222222
Q ss_pred ccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 567 QLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 567 ~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
......+++++++..|+.+. ..+.|...|+............ ......+++..+ ..+++-...+.|...|..+
T Consensus 170 ---~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~t 243 (619)
T 3s94_A 170 ---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYT 243 (619)
T ss_dssp ---CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSS
T ss_pred ---CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCC
Confidence 24678999999877777664 5678888888754443332211 122356777655 3444444567899999887
Q ss_pred CCeeeeccccccceeEEEEc-CCCceeeeeccCc--------eeEecCCCCCCCCccceecccCccccccceeecCccce
Q 001403 646 SNSVDAAGVLSDNLRKLSVN-PISTVTGAGIANG--------SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 716 (1084)
Q Consensus 646 ~~~~~~~~~~~~~i~~~~~~-p~~~~~~~~~~~~--------~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 716 (1084)
++....+.........+++. |..... +...+ .+.+. +|......+...+|....
T Consensus 244 g~~~~~i~~~~~~p~~i~v~~~~~qp~--~~n~C~~~ng~Cs~lCl~---~~~~~~~~C~C~~g~~l~------------ 306 (619)
T 3s94_A 244 GEGLREIHSDIFSPMDIHAFSQQRQPN--ATNPCGIDNGGCSHLCLM---SPVKPFYQCACPTGVKLL------------ 306 (619)
T ss_dssp CCCCEECCSCCCCCSEEEECCGGGSCC--CCCTTTTTGGGCSSEEEE---CSSTTSEEEECCTTCCBC------------
T ss_pred CcccEEEecCCCCCcEEEEEccccCCC--ccccccCCCCcccceEEC---CCCCCCceEeCCchheec------------
Confidence 76655544332222333332 111100 00000 00000 000000000000000000
Q ss_pred eeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCC
Q 001403 717 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 796 (1084)
Q Consensus 717 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1084)
. ...++. +....++..+..+.|+..++..... . ...... ..-..
T Consensus 307 -----~----d~~~C~---~~~~~~Ll~~~~~~i~~i~l~~~~~--------------------~-~~~~~~---~~l~~ 350 (619)
T 3s94_A 307 -----E----NGKTCK---DGATELLLLARRTDLRRISLDTPDF--------------------T-DIVLQL---EDIRH 350 (619)
T ss_dssp -----T----TSSCBC---SSCSEEEEEEESSCEEEEESSSTTC--------------------C-CEECCC---SCCSS
T ss_pred -----c----cCcccC---CCCceEEEEEcccceEEEecCCCcc--------------------c-eeEEec---cccCc
Confidence 0 000000 0011122223333444443322110 0 000011 12334
Q ss_pred ccEEEecCCCCEEEEEe--CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee
Q 001403 797 VPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 874 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l 874 (1084)
+.+++|.+.+..|..++ .+.|..+++........+...-.....+|+.+.++++..+-+..+.|.+.++.... ...+
T Consensus 351 ~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l 429 (619)
T 3s94_A 351 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKIL 429 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEE
T ss_pred cEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEE
Confidence 67899998777777665 58899999876444333433335667899986455566666677899999987543 3333
Q ss_pred -cccccCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE--eCC
Q 001403 875 -EGHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HET 949 (1084)
Q Consensus 875 -~~h~~~V~~l~~spd~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~ 949 (1084)
...-....++++.|....|..+.. ...|...+++...... .+.. .. .....+++++++..|..+ ..+
T Consensus 430 ~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~--l~~~---~l---~~P~GlalD~~~~~LY~aD~~~~ 501 (619)
T 3s94_A 430 ISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV--LVNT---SL---GWPNGLALDYDEGKIYWGDAKTD 501 (619)
T ss_dssp ECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EECS---SC---SCEEEEEEETTTTEEEEEETTTT
T ss_pred EECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE--EEeC---CC---CCCeeeEEcccCCEEEEEECCCC
Confidence 233456889999997445544432 3567777776533211 1111 11 257789999988877775 456
Q ss_pred eEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 001403 950 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1003 (1084)
Q Consensus 950 ~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~ 1003 (1084)
.|...++.... ...+.........++++..+ ...++-...+.|..-|..+|.
T Consensus 502 ~I~~~~~dG~~-~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 502 KIEVMNTDGTG-RRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEEEEESSSCC-CEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred EEEEEecCCCc-eEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 78888886333 33332222222345555443 333443445678777877773
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.3e-09 Score=126.68 Aligned_cols=193 Identities=16% Similarity=0.180 Sum_probs=132.3
Q ss_pred CCeEEEEEcCCceeEEEEcCCC-------------------------------CCeEEEEEcCCCCcEEEEEeCCCe---
Q 001403 814 GGVISLYIVMTFKTILTIMPPS-------------------------------PTATSLAFNPHDNNVIAIGMDDST--- 859 (1084)
Q Consensus 814 dg~i~vwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~s~~d~~~la~g~~dg~--- 859 (1084)
++.|..||..+|+.+..+.... ..-..++++| +..++++++.++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~ 260 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWD 260 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccc
Confidence 4678888888888776654210 0112578888 6778888888764
Q ss_pred ----------------EEEEEcCCceeeeeecc--cc-------cCEEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCc
Q 001403 860 ----------------ILIYNARSSEVISKLEG--HS-------KRVTGLVFSDALN---ILVSSGGDAQIFVWDVDGWG 911 (1084)
Q Consensus 860 ----------------i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~spd~~---~l~s~s~dg~I~iwd~~~~~ 911 (1084)
|..+|..+|+.+..++. |. .++.......+|+ .++.++.+|.++++|..+|+
T Consensus 261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 99999999999887754 32 2222223333665 78899999999999999998
Q ss_pred eeeeeeeec------------------------CCCC-----ccC--CCCceEEEEccCCCEEEEE-e------------
Q 001403 912 IQTCRSLQT------------------------PDGV-----MTL--APSETHIQFHKDQTRFLLV-H------------ 947 (1084)
Q Consensus 912 ~~~~~~~~~------------------------~~~~-----~~~--~~~v~~~~~s~dg~~la~~-~------------ 947 (1084)
......+.. ..+. ... ...-..++|+|+..++.+. .
T Consensus 341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~ 420 (689)
T 1yiq_A 341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA 420 (689)
T ss_dssp EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence 653211110 0000 000 0012347899998888773 1
Q ss_pred ---------------------------------CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcE
Q 001403 948 ---------------------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL 994 (1084)
Q Consensus 948 ---------------------------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i 994 (1084)
++.|..||+.+|+.+.+... ..++..-.++..|.++++++.||.+
T Consensus 421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~tagglvf~gt~dg~l 498 (689)
T 1yiq_A 421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY--VTIFNGGTLSTAGNLVFEGSADGRV 498 (689)
T ss_dssp CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEE
T ss_pred ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC--CCCccCccceECCCEEEEECCCCcE
Confidence 36799999999998877543 2334444667788899999999999
Q ss_pred EEEEcCCCceeEEec
Q 001403 995 SIHEASNLEVQCRIL 1009 (1084)
Q Consensus 995 ~vwd~~~~~~~~~~~ 1009 (1084)
+.||.++|+.+.++.
T Consensus 499 ~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 499 IAYAADTGEKLWEQP 513 (689)
T ss_dssp EEEETTTCCEEEEEE
T ss_pred EEEECCCCccceeee
Confidence 999999999998876
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-09 Score=115.43 Aligned_cols=238 Identities=12% Similarity=0.052 Sum_probs=156.0
Q ss_pred cceeeecccCCCCceEEEEcCCCce-eeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCE
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQHT-LLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 402 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~-las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 402 (1084)
...+..|..+.......+|+|+|++ +++...+ +.|..|+....... +..+...+..++++++|++
T Consensus 34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~---------~~i~~~~~~g~~~~-----~~~~~~~~~gl~~d~dG~l 99 (305)
T 3dr2_A 34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVG---------RRVLGWREDGTVDV-----LLDATAFTNGNAVDAQQRL 99 (305)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTT---------TEEEEEETTSCEEE-----EEESCSCEEEEEECTTSCE
T ss_pred CCceEEEecCCcCccCCeEeCCCCEEEEEECCC---------CEEEEEeCCCCEEE-----EeCCCCccceeeECCCCCE
Confidence 3445556666667889999999994 4554433 78899987432211 3335678999999999997
Q ss_pred EEEEeCCCEEEEEEccCCccccceeeeecc-cccEeEEEeecCCCcEEEEE----EeC-------------CCcEEEEEC
Q 001403 403 LGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CGD-------------DKTIKVWDA 464 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~~~~~~~~l~~h-~~~V~~l~~s~d~~~l~l~s----~~~-------------d~~i~vwd~ 464 (1084)
+++...++.|.+|+.+ ++.........+. ...+.+++++++|+ +.+| |.. .+.|..||.
T Consensus 100 ~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~ 176 (305)
T 3dr2_A 100 VHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP 176 (305)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred EEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence 7766666789999986 4421111011111 13467899999998 6665 321 256888887
Q ss_pred CCCceeeEeccCCCcEEEEeecccCCCcEEEEEecC------CeEEEEECCCCCc---eEeecCCCCeEEEEEEcCCCCE
Q 001403 465 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRR 535 (1084)
Q Consensus 465 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~~ 535 (1084)
.+++..... .......++|+ ++++.|+.+... +.|.+|++..... .............++++++|++
T Consensus 177 ~~g~~~~~~--~~~~p~gl~~s--pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l 252 (305)
T 3dr2_A 177 DGSPLQRMA--DLDHPNGLAFS--PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL 252 (305)
T ss_dssp SSCCCEEEE--EESSEEEEEEC--TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE
T ss_pred CCCcEEEEe--cCCCCcceEEc--CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE
Confidence 777654433 33456778884 466777776655 7899999875431 1111122334457899999995
Q ss_pred EEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCc
Q 001403 536 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 593 (1084)
Q Consensus 536 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 593 (1084)
.++. . + .|.+|+. +++.+..+.... .+..++|+++++.|+.++.++.
T Consensus 253 wv~~-~----~-gv~~~~~-~g~~~~~~~~~~----~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 253 WSSS-G----T-GVCVFDS-DGQLLGHIPTPG----TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp EECC-S----S-EEEEECT-TSCEEEEEECSS----CCCEEEECTTSCEEEEEETTEE
T ss_pred EEec-C----C-cEEEECC-CCCEEEEEECCC----ceeEEEEeCCCCEEEEEcCCeE
Confidence 5443 2 2 3999998 577777766544 4788999999999988887643
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.19 E-value=3e-10 Score=124.19 Aligned_cols=189 Identities=8% Similarity=0.048 Sum_probs=134.5
Q ss_pred eEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCC
Q 001403 728 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 807 (1084)
Q Consensus 728 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 807 (1084)
.+..+++++....+++++.+ .+.+|++........... .. +. . .... .+.. |+.++| |+.
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~---~~---~~----~-~~~~-----~lp~-V~~l~f--d~~ 98 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDS---TP---LT----F-KWEK-----EIPD-VIFVCF--HGD 98 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSS---CC---CC----C-SEEE-----ECTT-EEEEEE--ETT
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhcccc---cc---cc----c-eEEe-----eCCC-eeEEEE--CCC
Confidence 57889999999998888887 455588654220000000 00 00 0 0111 1445 999999 999
Q ss_pred EEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEc
Q 001403 808 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 887 (1084)
Q Consensus 808 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s 887 (1084)
+|+++.++.|++||+.+.........+...+.++.+.+ . -+|+++.||.|.+||+.++.... +...|+|++||
T Consensus 99 ~L~v~~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WS 171 (388)
T 1xip_A 99 QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVT 171 (388)
T ss_dssp EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEEC
T ss_pred EEEEEcCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEc
Confidence 99999889999999987776666666777788888876 3 28889999999999999877643 55789999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecC---CCCccCCCCceEEEEccCCCEEEE
Q 001403 888 DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP---DGVMTLAPSETHIQFHKDQTRFLL 945 (1084)
Q Consensus 888 pd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~dg~~la~ 945 (1084)
|+| ++.|..||++++|+.+.++......+..+ ..+......|.++.|.+++.++++
T Consensus 172 pkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 172 NSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp SSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred CCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 999 78899999999999988664212223111 110011236999999999999998
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=5.1e-09 Score=125.78 Aligned_cols=332 Identities=10% Similarity=0.050 Sum_probs=189.3
Q ss_pred cEEEEEecCCeEEEEECCCCCceEeecCCCCe-----------EEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-----------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-----------i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
..++.++.++.|..+|..+++.+..+...... ...+++ ++..+++++. ++.|+.+|..+|+.+
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~----dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAW----DGRLIALDAATGKEV 151 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence 35666777788888888887777666543210 112222 4566776654 667999999999999
Q ss_pred eeeecc-ccc-cCceEE-EEEcCCCCEEEEEEC------CCcEEEEECCCCeEEEEEcCCCCC-----------------
Q 001403 561 RTYQGL-QLQ-HNSVSV-VHFDTAKDQILAAGD------DHVIKIWDMNKVQLLTTIDAGGGL----------------- 614 (1084)
Q Consensus 561 ~~~~~~-~~~-~~~v~~-~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~----------------- 614 (1084)
..+... ... ...+.. ... .+..+++++. +|.|+.||..+|+.+..+......
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 888764 100 001111 111 2345666543 799999999999999887653221
Q ss_pred -------------CCcceEEEecCCCEEEEEECCC-------------------eEEEEEcCCCCeeeeccccccceeEE
Q 001403 615 -------------PENPRICFNKNGTLLAVIANEN-------------------RIKILETPESNSVDAAGVLSDNLRKL 662 (1084)
Q Consensus 615 -------------~~v~~v~~s~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~i~~~ 662 (1084)
.....++++|++..+++++.++ .|..+|..+++.....+....
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~----- 304 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPG----- 304 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT-----
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCC-----
Confidence 0113578889888888887664 355555555544433321100
Q ss_pred EEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCC---C
Q 001403 663 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG---Q 739 (1084)
Q Consensus 663 ~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g---~ 739 (1084)
..|+... .....-+....+| .
T Consensus 305 ----------------------------------------d~wd~~~----------------~~~p~l~~~~~dG~~~~ 328 (677)
T 1kb0_A 305 ----------------------------------------DNWDYTS----------------TQPMILADIKIAGKPRK 328 (677)
T ss_dssp ----------------------------------------CCSCCCC----------------CSCCEEEEEEETTEEEE
T ss_pred ----------------------------------------ccccccc----------------CCCcEEEecccCCcEee
Confidence 0111110 0111112223355 5
Q ss_pred eEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCcccc----------ccCcCCCCCCCccEEEecCCCCEE
Q 001403 740 AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV----------NDTTDSNSQEAVPCFALSKNDAYL 809 (1084)
Q Consensus 740 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~v~~l~~s~dg~~l 809 (1084)
.++.++.+|.+.++|...++....-.........-+| .++..... ...+...-...-..++++|++.++
T Consensus 329 ~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d-~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~ 407 (677)
T 1kb0_A 329 VILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD-KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (677)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC-TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred EEEEECCCCEEEEEECCCCCEeccccccccCcccccC-CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence 5777777788887776655431110000000000112 22221100 001110011112467889988877
Q ss_pred EEEeC--------------------------------------------CeEEEEEcCCceeEEEEcCCCCCeEEEEEcC
Q 001403 810 FSASG--------------------------------------------GVISLYIVMTFKTILTIMPPSPTATSLAFNP 845 (1084)
Q Consensus 810 ~~~sd--------------------------------------------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 845 (1084)
++... |.|..||+.+++.+..+.. ...+....++.
T Consensus 408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~ 486 (677)
T 1kb0_A 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTT 486 (677)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEE
T ss_pred EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEe
Confidence 76421 6799999999999888763 23344455666
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCceeeeeecccc-cCEEEEEEcCCCCEEEE
Q 001403 846 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVS 895 (1084)
Q Consensus 846 ~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~-~~V~~l~~spd~~~l~s 895 (1084)
++.++++++.||.+++||..+|+.+..+.... ....-+.|.++|+.++.
T Consensus 487 -~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 487 -AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp -TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred -CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 56688889999999999999999998887433 22334566788875554
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.5e-09 Score=112.98 Aligned_cols=231 Identities=14% Similarity=0.072 Sum_probs=150.8
Q ss_pred CCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC
Q 001403 387 PGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 465 (1084)
Q Consensus 387 h~~~V~~v~fspdg~-~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~ 465 (1084)
........+|+|+|+ ++++...++.|..|+.. ++ .. .+..+...+..++++++|+ ++++...++.|.+|+..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDAD 115 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECCC
Confidence 445677899999999 55566678899999984 43 22 3445667789999999998 56655556789999975
Q ss_pred CCceeeEeccC----CCcEEEEeecccCCCcEEEE----Eec-------------CCeEEEEECCCCCceEeecCCCCeE
Q 001403 466 TGSRTYSFEGH----GAPVYSLCPHAKENIHFIFS----ISV-------------DGKIKAWLYDSLGARVDYDAPGLGC 524 (1084)
Q Consensus 466 ~g~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s----~s~-------------dg~i~iwd~~~~~~~~~~~~~~~~i 524 (1084)
|+........ ...+..+++ +++|.++++ |.. .+.|..||..+++..... .....
T Consensus 116 -g~~~~~~~~~~~~~~~~~~~i~~--d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p 190 (305)
T 3dr2_A 116 -GQAHLLVGRYAGKRLNSPNDLIV--ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP 190 (305)
T ss_dssp -SCEEEEECEETTEECSCCCCEEE--CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred -CCEEEEEeccCCCccCCCCCEEE--CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence 6533221111 123556777 457777776 321 245666766555544332 33456
Q ss_pred EEEEEcCCCCEEEEEeeCC--CCCeeEEEecCCCceEe--eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 001403 525 TRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 600 (1084)
Q Consensus 525 ~~~~~s~d~~~l~~~~~~~--~~~~~i~~wd~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 600 (1084)
..++|+||++.|+.+.... .+.+.|++|++..+... ..+... .......++++++|+. .++..+ .|.+|+.
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~- 265 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS- 265 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSCE-EECCSS-EEEEECT-
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCCE-EEecCC-cEEEECC-
Confidence 7899999999888775421 01256999998765411 111111 1234567889999984 444444 4999998
Q ss_pred CCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCe
Q 001403 601 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 637 (1084)
Q Consensus 601 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 637 (1084)
.++.+..+.... .+.+++|+++++.|.+++.++.
T Consensus 266 ~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 266 DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEE
T ss_pred CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeE
Confidence 577777776544 3788999999998988887643
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-08 Score=109.55 Aligned_cols=223 Identities=14% Similarity=0.059 Sum_probs=146.5
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 390 SVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 390 ~V~~v~fspdg~-~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
-...++|+|++. ++++...++.|..||..+++.. .+ .+...+.+++|+++|+ ++++. . ..|.+||..+++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~-~~~~~v~~i~~~~dg~--l~v~~-~-~gl~~~d~~~g~ 120 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT----VH-ALPFMGSALAKISDSK--QLIAS-D-DGLFLRDTATGV 120 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----EE-ECSSCEEEEEEEETTE--EEEEE-T-TEEEEEETTTCC
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE----EE-ECCCcceEEEEeCCCe--EEEEE-C-CCEEEEECCCCc
Confidence 345688999855 4555556789999999887532 12 2345799999999998 55543 3 459999998887
Q ss_pred eeeEecc----CCCcEEEEeecccCCCcEEEEEec------CCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEE
Q 001403 469 RTYSFEG----HGAPVYSLCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 538 (1084)
Q Consensus 469 ~~~~~~~----h~~~v~~~~~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 538 (1084)
....... ....+..+++.+ +|.++++... .+.|..++ . .....+.........++|+|||+.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~i~~d~--~G~l~v~~~~~~~~~~~~~l~~~~--~-g~~~~~~~~~~~~~~i~~s~dg~~lyv 195 (326)
T 2ghs_A 121 LTLHAELESDLPGNRSNDGRMHP--SGALWIGTMGRKAETGAGSIYHVA--K-GKVTKLFADISIPNSICFSPDGTTGYF 195 (326)
T ss_dssp EEEEECSSTTCTTEEEEEEEECT--TSCEEEEEEETTCCTTCEEEEEEE--T-TEEEEEEEEESSEEEEEECTTSCEEEE
T ss_pred EEEEeeCCCCCCCCCCCCEEECC--CCCEEEEeCCCcCCCCceEEEEEe--C-CcEEEeeCCCcccCCeEEcCCCCEEEE
Confidence 5432221 123578888854 6666665442 23454454 3 222222222234678999999998877
Q ss_pred EeeCCCCCeeEEEecCC--Cc-eE-----eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcC
Q 001403 539 CGTSKEGESFLVEWNES--EG-AI-----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 610 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~--~~-~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 610 (1084)
+.. ..+.|.+||.. ++ .. ...+.... ..+..++++++|...++...++.|.+||. +++.+..+..
T Consensus 196 ~~~---~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~ 268 (326)
T 2ghs_A 196 VDT---KVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV 268 (326)
T ss_dssp EET---TTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC
T ss_pred EEC---CCCEEEEEEcccccCCcccCceEEEECCCCC---CCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC
Confidence 642 24679999975 55 32 11222122 45678999999988777777789999998 6777777765
Q ss_pred CCCCCCcceEEEe-cCCCEEEEEECC
Q 001403 611 GGGLPENPRICFN-KNGTLLAVIANE 635 (1084)
Q Consensus 611 ~~~~~~v~~v~~s-~~~~~l~~~~~d 635 (1084)
.. ..+.+++|+ ++++.|++++..
T Consensus 269 ~~--~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 269 PG--KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp SC--SBEEEEEEESTTSCEEEEEEBC
T ss_pred CC--CCcEEEEEecCCCCEEEEEecC
Confidence 43 247899998 888877666554
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-08 Score=123.33 Aligned_cols=382 Identities=11% Similarity=0.105 Sum_probs=215.0
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCc----------E-EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP----------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 517 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~----------v-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 517 (1084)
.++.++.++.|.-+|.++|+.+-++...... + ..+++ .+..++.++.|+.|..+|..+++.+...
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE----ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 4666777889999999999998777543221 0 11122 2357888999999999999999988766
Q ss_pred cCC-C-CeEEEEEEcC---CCCEEEEEeeCC--CCCeeEEEecCCCceEeeeeeccc-----------------------
Q 001403 518 DAP-G-LGCTRMAYSA---NGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQ----------------------- 567 (1084)
Q Consensus 518 ~~~-~-~~i~~~~~s~---d~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~----------------------- 567 (1084)
... . .....+..+| ++ .++++.... ..++.|+.||..+|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 543 1 1101111112 44 444443211 135789999999999987765211
Q ss_pred -----cccCceEEEEEcCCCCEEEEEECCCc-------------------EEEEECCCCeEEEEEcCCCCC-------CC
Q 001403 568 -----LQHNSVSVVHFDTAKDQILAAGDDHV-------------------IKIWDMNKVQLLTTIDAGGGL-------PE 616 (1084)
Q Consensus 568 -----~~~~~v~~~~~s~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~ 616 (1084)
........++++|++..++.++.++. |..||..+|+.+..++...+. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 00011125788899999999887764 999999999999887653211 01
Q ss_pred cceEEEecCCC---EEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCcc
Q 001403 617 NPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 693 (1084)
Q Consensus 617 v~~v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l 693 (1084)
........+|+ .++.++.+|.++++|..+++.+......... +.-.+.+. .+..+
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~~~~---------------------~~~pi 364 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQS-WTKGMDMK---------------------TGRPI 364 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS-SEEEEETT---------------------TTEEE
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccc-cccccCcc---------------------CCCcc
Confidence 11112223565 7888999999999999999887544321100 00000000 00000
Q ss_pred ceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCe
Q 001403 694 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 773 (1084)
Q Consensus 694 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 773 (1084)
.... ..|.. +.....+..+.......-..++++|+...+++...+....++......
T Consensus 365 ~~~~-----~~~~~----~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~-------------- 421 (689)
T 1yiq_A 365 LDEE-----NAAYW----KNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP-------------- 421 (689)
T ss_dssp ECHH-----HHCTT----TSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC--------------
T ss_pred cchh-----hcccc----CCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc--------------
Confidence 0000 00000 000111122221122233458999998888888776544443221100
Q ss_pred eecCCCCCccccccCcCCCCCCCccEEEecCC---CCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCc
Q 001403 774 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN---DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 849 (1084)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d---g~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~ 849 (1084)
.|....+. . .... .+...|. +....... +|.|..||+.+++.+..+..+.. ...-.++. .+.
T Consensus 422 ~~~~~~~~-~---------~~g~--~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agg 487 (689)
T 1yiq_A 422 KRNPFKSM-Y---------QLGL--RTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGN 487 (689)
T ss_dssp CCCSCTTS-C---------CCSS--EECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTT
T ss_pred cccccccc-c---------ccCc--cccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccceE-CCC
Confidence 01110000 0 0000 0000000 00000001 37899999999999888765432 23335555 566
Q ss_pred EEEEEeCCCeEEEEEcCCceeeeeecccccC-EEEEEEcCCCCEEE
Q 001403 850 VIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILV 894 (1084)
Q Consensus 850 ~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~spd~~~l~ 894 (1084)
++++|+.||.|+.||.++|+.+.+++...+. ..-+.|+.||+..+
T Consensus 488 lvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 488 LVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred EEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 8899999999999999999999888754332 23467778887544
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.16 E-value=5e-08 Score=109.16 Aligned_cols=150 Identities=15% Similarity=0.064 Sum_probs=99.0
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccC---------CCcEE-EEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGH---------GAPVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 518 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h---------~~~v~-~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 518 (1084)
.++.++.++.|..+|.++|+.+.+.... ...+. .+.. ++..++.++.++.|..+|..+++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 4777777899999999999988666542 12232 2222 23578888999999999999988877665
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccccc--CceEEEEEcCCCCEEEEEECCCcEEE
Q 001403 519 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKI 596 (1084)
Q Consensus 519 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~i 596 (1084)
........... . +..+++++. ++.|+.+|..+|+.+..+....... ......... +..+++++.++.+..
T Consensus 131 ~~~~~~~~p~~-~-~~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVV-S-DGLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEE-E-TTEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEE-E-CCEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 44322111122 1 345555543 5679999999999887776533000 000111222 457888888999999
Q ss_pred EECCCCeEEEEEcC
Q 001403 597 WDMNKVQLLTTIDA 610 (1084)
Q Consensus 597 wd~~~~~~~~~~~~ 610 (1084)
+|..+|+.+.....
T Consensus 203 ~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 203 VLMEQGQMIWQQRI 216 (376)
T ss_dssp EETTTCCEEEEEEC
T ss_pred EECCCCcEEEEEec
Confidence 99999998877754
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.4e-08 Score=108.91 Aligned_cols=223 Identities=12% Similarity=0.040 Sum_probs=144.8
Q ss_pred CceEEEEcCCCcee-eeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEE
Q 001403 336 SPMSMDFHPVQHTL-LLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL 414 (1084)
Q Consensus 336 ~V~~v~~spdg~~l-as~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~i 414 (1084)
-..+.+|+|++..| ++...+ +.|..||..++.... +. ....+.+++|+|+|+++++. .++ |.+
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~---------~~i~~~d~~~~~~~~----~~-~~~~v~~i~~~~dg~l~v~~-~~g-l~~ 113 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILE---------RELHELHLASGRKTV----HA-LPFMGSALAKISDSKQLIAS-DDG-LFL 113 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGG---------TEEEEEETTTTEEEE----EE-CSSCEEEEEEEETTEEEEEE-TTE-EEE
T ss_pred CCcCCeEeCCCCEEEEEECCC---------CEEEEEECCCCcEEE----EE-CCCcceEEEEeCCCeEEEEE-CCC-EEE
Confidence 45688999986544 444333 789999988754321 11 34679999999999887765 444 999
Q ss_pred EEccCCccccceeeee-c-ccccEeEEEeecCCCcEEEEEEeC------CCcEEEEECCCCceeeEeccCCCcEEEEeec
Q 001403 415 YAYHGGSDARQQLEID-A-HVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 486 (1084)
Q Consensus 415 wd~~~~~~~~~~~~l~-~-h~~~V~~l~~s~d~~~l~l~s~~~------d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~ 486 (1084)
||..+++... +.... + ....+.+++++|+|+ ++++... .+.|..++ +++.. .+..+......++|+
T Consensus 114 ~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s 187 (326)
T 2ghs_A 114 RDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFS 187 (326)
T ss_dssp EETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEEC
T ss_pred EECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEc
Confidence 9998876321 11111 1 124688999999998 4554432 24555556 55433 333333456788885
Q ss_pred ccCCCcEEE-EEecCCeEEEEECC--CC-Cc-----eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc
Q 001403 487 AKENIHFIF-SISVDGKIKAWLYD--SL-GA-----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557 (1084)
Q Consensus 487 ~~~~~~~l~-s~s~dg~i~iwd~~--~~-~~-----~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~ 557 (1084)
++++.++ +.+.++.|.+|+++ ++ .. ...+.........++++++|++.++... .+.|.+||. ++
T Consensus 188 --~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~~~d~-~g 260 (326)
T 2ghs_A 188 --PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDRYDT-DG 260 (326)
T ss_dssp --TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEEECT-TC
T ss_pred --CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEEEECC-CC
Confidence 4666554 44567899999986 33 21 1122223456788999999987766532 456999998 57
Q ss_pred eEeeeeeccccccCceEEEEEc-CCCCEEEEEEC
Q 001403 558 AIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD 590 (1084)
Q Consensus 558 ~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 590 (1084)
+.+..+..+. ..+.+++|+ ++++.|++++.
T Consensus 261 ~~~~~i~~~~---~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 261 NHIARYEVPG---KQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CEEEEEECSC---SBEEEEEEESTTSCEEEEEEB
T ss_pred CEEEEEECCC---CCcEEEEEecCCCCEEEEEec
Confidence 7777776554 579999998 88887766553
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=5.9e-09 Score=113.83 Aligned_cols=283 Identities=10% Similarity=-0.049 Sum_probs=172.3
Q ss_pred eEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE----------CCCcEEEEECCCCeEEEEEcCCCC----
Q 001403 548 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGG---- 613 (1084)
Q Consensus 548 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~---- 613 (1084)
.|.++|..+++.+..+.... .+ .+.++||+++++++. .++.|.+||..+++.+..+...+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~---~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAF---LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTTEEEEEEEECT---TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred eEEEEECCCCeEEEEEeCCC---CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence 78999999999999988655 45 799999999999876 368899999999999999875411
Q ss_pred -CCCcceEEEecCCCEEEEEEC--CCeEEE--EEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCC
Q 001403 614 -LPENPRICFNKNGTLLAVIAN--ENRIKI--LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKE 688 (1084)
Q Consensus 614 -~~~v~~v~~s~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~ 688 (1084)
......++++|||++++++.. ...+.+ +|..+ +..+..... ..+. |
T Consensus 122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~----------------------p 172 (368)
T 1mda_H 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIH----------------------P 172 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCE----------------------E
T ss_pred cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEc----------------------c
Confidence 123568999999999998874 467888 88766 222211000 0011 1
Q ss_pred CCC-ccceecccCcccccccee-----ecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCc
Q 001403 689 DVK-PEISVEAENKSEVEKPLF-----ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTL 762 (1084)
Q Consensus 689 ~~~-~l~~~~~d~~i~~w~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~ 762 (1084)
+++ ..++.+.|+.+.+.++.. ...........+- ...+. . ++++..++..+. +.+.+.|.......
T Consensus 173 ~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~v--g~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~- 244 (368)
T 1mda_H 173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC--SSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGAT- 244 (368)
T ss_dssp EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB--CSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCE-
T ss_pred CCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeC--CCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcce-
Confidence 111 122223334443333322 1000000000000 11222 3 666666666666 88888776432100
Q ss_pred CcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--C--------CeEEEEEcCCceeEEEEc
Q 001403 763 STEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--G--------GVISLYIVMTFKTILTIM 832 (1084)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--d--------g~i~vwd~~~~~~~~~~~ 832 (1084)
.+..|........... ........++++||++.+.++. . +.+.++|+.+++.+.++.
T Consensus 245 --------v~~~~~~~~~~~~~~~-----~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 245 --------MKAAIDGNESGRKADN-----FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp --------EECCCCSSCTHHHHTT-----EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred --------EEEEEEeccccccccc-----cccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 0111222111000000 0112223378999999887653 2 357799999999988876
Q ss_pred CCCCCeEEEEEcCCCCc-EEEEEe-CCCeEEEEEcCCceeeeeecccccCEEEEEEcC
Q 001403 833 PPSPTATSLAFNPHDNN-VIAIGM-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 888 (1084)
Q Consensus 833 ~~~~~i~~l~~s~~d~~-~la~g~-~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~sp 888 (1084)
... ....++|+| |++ ++++.. .++.|.++|+.+++.+.++..... ...+++.+
T Consensus 312 vg~-~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 312 NGH-DSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp EEE-EECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred CCC-CcceEEECC-CCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence 433 688999999 666 566666 599999999999999999875543 34555543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-07 Score=103.45 Aligned_cols=174 Identities=14% Similarity=0.085 Sum_probs=119.8
Q ss_pred CeEEEEEcCCceeEEEEcCCC---CCeEEEEEcCCCCcEEEEEe-------------------CCCeEEEEEcCCceeee
Q 001403 815 GVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGM-------------------DDSTILIYNARSSEVIS 872 (1084)
Q Consensus 815 g~i~vwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~la~g~-------------------~dg~i~iwd~~~~~~~~ 872 (1084)
|.+.++|..+++.+.++.... .....+-|+| +++.+++.. .+.+|.+||+.+++.+.
T Consensus 164 g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~ 242 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH 242 (462)
T ss_dssp CEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred CeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence 679999999999998886332 2234588899 788887774 36899999999998887
Q ss_pred eeccc--ccCEEEEEE--cCCCCEEEEEe------CCCcEEEEeCCCCceeeeeeeecCCCC------------ccCCCC
Q 001403 873 KLEGH--SKRVTGLVF--SDALNILVSSG------GDAQIFVWDVDGWGIQTCRSLQTPDGV------------MTLAPS 930 (1084)
Q Consensus 873 ~l~~h--~~~V~~l~~--spd~~~l~s~s------~dg~I~iwd~~~~~~~~~~~~~~~~~~------------~~~~~~ 930 (1084)
++.-- ......+.| +|+++++..++ .+++|.+|..+.+.......+...... ......
T Consensus 243 tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 243 SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence 77642 123445555 99999988777 467898887776554333332211100 000135
Q ss_pred ceEEEEccCCCEEEEE--eCCeEEEEEcCC---cceeeEeecC-------C------CCCEEEEEEccCCCEEEEEe
Q 001403 931 ETHIQFHKDQTRFLLV--HETHLAIYEAEE---LTCLKQWFPI-------S------SVPISQATFSCDCRMVFTSF 989 (1084)
Q Consensus 931 v~~~~~s~dg~~la~~--~d~~i~vwd~~~---~~~~~~~~~~-------h------~~~v~~l~fs~dg~~l~t~~ 989 (1084)
...+.+|+||++|.++ ..+.|.+||+.. .+.+..+..+ | .+.-..+++||||++|+++.
T Consensus 323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 7899999999999997 457899999863 3444443332 1 01357899999999999987
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.4e-08 Score=106.71 Aligned_cols=232 Identities=14% Similarity=0.088 Sum_probs=151.5
Q ss_pred Eec--CCCCEEEEEe--CCeEEEEEcCCc----eeEEEEc-------CCCCCeEEEEEcCCCCcEEEEEeCC------Ce
Q 001403 801 ALS--KNDAYLFSAS--GGVISLYIVMTF----KTILTIM-------PPSPTATSLAFNPHDNNVIAIGMDD------ST 859 (1084)
Q Consensus 801 ~~s--~dg~~l~~~s--dg~i~vwd~~~~----~~~~~~~-------~~~~~i~~l~~s~~d~~~la~g~~d------g~ 859 (1084)
.++ +++++|++.+ ++.|.++|+.+. +...++. ........+.++| ++ ++++...+ |.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence 446 8899998887 688999999765 6666663 1112456778899 77 66666555 78
Q ss_pred EEEEEcCCceeeeeeccccc---CEEEEEEcCCCCEEEEEe-------------------CCCcEEEEeCCCCceeeeee
Q 001403 860 ILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSG-------------------GDAQIFVWDVDGWGIQTCRS 917 (1084)
Q Consensus 860 i~iwd~~~~~~~~~l~~h~~---~V~~l~~spd~~~l~s~s-------------------~dg~I~iwd~~~~~~~~~~~ 917 (1084)
|.++|..+++.+.++..-.+ --..+.|+|+++.+++.. .+.+|.+||+.+++... .
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--t 243 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--S 243 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--E
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--E
Confidence 99999999999988863222 234588899999999885 36889999999864333 2
Q ss_pred eecCCCCccCCCCceEEEE--ccCCCEEEEEe-------CCeEEEEEcCCcceeeEe----ec----C-----------C
Q 001403 918 LQTPDGVMTLAPSETHIQF--HKDQTRFLLVH-------ETHLAIYEAEELTCLKQW----FP----I-----------S 969 (1084)
Q Consensus 918 ~~~~~~~~~~~~~v~~~~~--s~dg~~la~~~-------d~~i~vwd~~~~~~~~~~----~~----~-----------h 969 (1084)
+....... ....+.| +|+|+++.++. +++|.+|....|+..... .. + -
T Consensus 244 I~vg~~g~----~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 244 LTLGEENR----MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EESCTTEE----EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EecCCCCC----ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 33221111 2445555 99999988843 357877665544311110 00 0 0
Q ss_pred CCCEEEEEEccCCCEEEEEeC-CCcEEEEEcCC---CceeEEecccccc-----CCCCcccceeeeEEEECCCCCCEEEE
Q 001403 970 SVPISQATFSCDCRMVFTSFV-DGTLSIHEASN---LEVQCRILSTAYL-----RPTTSCLHVYPHAIAAHPLKPTQFAV 1040 (1084)
Q Consensus 970 ~~~v~~l~fs~dg~~l~t~~~-dg~i~vwd~~~---~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~p~d~~~l~~ 1040 (1084)
......+.+|+||++|+++.. .+.|.++|+.. .+++..+....-. +.+ ......|..++++| ||++|.+
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G-~~~~ggPr~~~lSp-DGk~LyV 397 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAG-HKLTGAPQMLEISR-DGRRVYV 397 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTS-CCCCSCCCCEEECT-TSSEEEE
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccc-ccCCCCCCEEEEcC-CCCEEEE
Confidence 245788999999999987775 58999999863 3455444422110 000 00012467789999 6899988
Q ss_pred Ee
Q 001403 1041 GL 1042 (1084)
Q Consensus 1041 ~~ 1042 (1084)
+.
T Consensus 398 aN 399 (462)
T 2ece_A 398 TN 399 (462)
T ss_dssp EC
T ss_pred Ec
Confidence 88
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.08 E-value=6.1e-09 Score=114.26 Aligned_cols=302 Identities=11% Similarity=0.050 Sum_probs=176.4
Q ss_pred eEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEe
Q 001403 437 NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD 516 (1084)
Q Consensus 437 ~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 516 (1084)
.+.....++. +..++.++.|..|| .+|+.+.........+.++.. ..++ .+..++.+ +..+|. +++....
T Consensus 23 ~~~~~d~~g~---l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~--~~~g-~l~v~t~~--l~~~d~-~g~~~~~ 92 (330)
T 3hxj_A 23 SSPILAKNGT---IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI--GKDG-TIYFGSDK--VYAINP-DGTEKWR 92 (330)
T ss_dssp CCCEECTTSC---EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEE--TTTT-EECCSSCE--EEEECC-CGGGGGG
T ss_pred cCceEccCCe---EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEE--ecCC-cEEEecCc--EEEECC-CCcEEEE
Confidence 3445556665 66677788999999 889887666544445566655 3344 45555544 777775 3333333
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEE
Q 001403 517 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 596 (1084)
Q Consensus 517 ~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 596 (1084)
+...........+. +..+.+++. ++.|..+|.. ++....+.... ..+.++...+++. ++.++.++.|..
T Consensus 93 ~~~~~~~~~~~~~~--~~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~---~~~~~~~~~~~g~-l~vgt~~~~l~~ 161 (330)
T 3hxj_A 93 FDTKKAIVSDFTIF--EDILYVTSM----DGHLYAINTD-GTEKWRFKTKK---AIYATPIVSEDGT-IYVGSNDNYLYA 161 (330)
T ss_dssp SCC-----CCEEEE--TTEEEEECT----TSEEEEECTT-SCEEEEEECSS---CCCSCCEECTTSC-EEEECTTSEEEE
T ss_pred EECCCCcccCceEE--CCEEEEEec----CCEEEEEcCC-CCEEEEEcCCC---ceeeeeEEcCCCE-EEEEcCCCEEEE
Confidence 33222222223333 444555543 4569999988 77766655443 3455566666665 666778899999
Q ss_pred EECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeecc
Q 001403 597 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 676 (1084)
Q Consensus 597 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~ 676 (1084)
+|.. ++....+..... .+.++...+++.+++. + +.+..+| .+++.......
T Consensus 162 ~d~~-g~~~~~~~~~~~--~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~---------------------- 212 (330)
T 3hxj_A 162 INPD-GTEKWRFKTNDA--ITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYA---------------------- 212 (330)
T ss_dssp ECTT-SCEEEEEECSSC--CCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECC----------------------
T ss_pred ECCC-CCEeEEEecCCC--ceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEcc----------------------
Confidence 9998 777766654322 3556666666664433 3 5566665 33321111000
Q ss_pred CceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeecc
Q 001403 677 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 756 (1084)
Q Consensus 677 ~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~ 756 (1084)
T Consensus 213 -------------------------------------------------------------------------------- 212 (330)
T 3hxj_A 213 -------------------------------------------------------------------------------- 212 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCC
Q 001403 757 RNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP 836 (1084)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~ 836 (1084)
....+.+++..++|...+...++.+..+|. +++....+.....
T Consensus 213 ------------------------------------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~ 255 (330)
T 3hxj_A 213 ------------------------------------GYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKR 255 (330)
T ss_dssp ------------------------------------SSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSC
T ss_pred ------------------------------------CCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCC
Confidence 111233445555555444444566666653 4444444443333
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001403 837 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 837 ~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~ 909 (1084)
.+.++.+.+ ++ .|.+++.+|.|..+|. +++.+..+......+.++...++|.+. .++.+|.+++...+.
T Consensus 256 ~~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 256 IESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYALFNLE 324 (330)
T ss_dssp CCSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEEEC--
T ss_pred ccccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEEeccc
Confidence 344556655 45 5666888888999995 677776665555667777787777654 588899999887765
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.07 E-value=7e-09 Score=117.21 Aligned_cols=346 Identities=11% Similarity=0.030 Sum_probs=202.3
Q ss_pred cEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEe----------cCCeEEEEECCCCCceEe
Q 001403 447 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------VDGKIKAWLYDSLGARVD 516 (1084)
Q Consensus 447 ~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~ 516 (1084)
+..+.||+..|.++|+-+.+++.+..+.-....-. .-|-.++....++..+ .+|. ....
T Consensus 15 ~~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~-~g~g~~~es~~~l~~~~~~~~~~~~~~~g~----------~~~~ 83 (595)
T 1fwx_A 15 YYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSA-TGWGQTNESVRIHERTMSERTKKFLAANGK----------RIHD 83 (595)
T ss_dssp EEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTT-TCTTTBHHHHHHHHTTCCHHHHHHHHHTTC----------SSCC
T ss_pred EEEEeeCCcCceEEEEecCCcceEEEeeeecCCCC-cccCCchhHHHHHhccCCccchhhhhccCc----------eecc
Confidence 34678899999999999999999988753211000 0000000000111000 0010 0000
Q ss_pred ecCCCCeEEEEEE---cCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEE-c-CCCCEEEEEEC-
Q 001403 517 YDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-D-TAKDQILAAGD- 590 (1084)
Q Consensus 517 ~~~~~~~i~~~~~---s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~-s-~~~~~l~~~~~- 590 (1084)
.+..+. ..+++ .+||++++.+.. .+..|.+.|+.+.++...+.-.. ......+++ + |++++++++++
T Consensus 84 -~gd~hh-~~~s~t~g~~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~~ 156 (595)
T 1fwx_A 84 -NGDLHH-VHMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGED 156 (595)
T ss_dssp -CCCBCC-EEEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEECS
T ss_pred -cCCCCc-cccCCCCCCcCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCC--CCCCcceeeeecCCCcEEEEeccc
Confidence 011111 22333 348999998653 36679999999999888554322 235778887 5 99999999852
Q ss_pred -----------------CCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeecc
Q 001403 591 -----------------DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 653 (1084)
Q Consensus 591 -----------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 653 (1084)
++.+.+.|..+.+...++...+. ...++++|+|+++++.+.+.. .+..+....
T Consensus 157 ~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se-------~~~~i~~~~ 226 (595)
T 1fwx_A 157 ETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSE-------KGMTLPEMT 226 (595)
T ss_dssp CEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTT-------CCSSHHHHT
T ss_pred ccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCcc-------cCcchhhcc
Confidence 45799999999999998876543 357889999999999887531 010000000
Q ss_pred ccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEE
Q 001403 654 VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 733 (1084)
Q Consensus 654 ~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 733 (1084)
. . .-..+.+.+.... ..
T Consensus 227 ~--~----------------------------------------~~d~v~V~~~~~~---------------------~~ 243 (595)
T 1fwx_A 227 A--A----------------------------------------EMDHIVVFNIAEI---------------------EK 243 (595)
T ss_dssp C--C----------------------------------------SEEEEEEEEHHHH---------------------HH
T ss_pred c--c----------------------------------------ccceEEEeeccce---------------------eE
Confidence 0 0 0001111111000 01
Q ss_pred EecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCc-cccccCcCCCCCCCccEEEecCCCCEEEEE
Q 001403 734 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ-FMVNDTTDSNSQEAVPCFALSKNDAYLFSA 812 (1084)
Q Consensus 734 ~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~ 812 (1084)
+.++|++... +.+.|.|....+ +.. +.... -.....++.++|||++++++
T Consensus 244 ~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip-----vg~~PhGv~~sPDGk~v~V~ 294 (595)
T 1fwx_A 244 AIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP-----IANNPHGCNMAPDKKHLCVA 294 (595)
T ss_dssp HHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE-----EESSCCCEEECTTSSEEEEE
T ss_pred eccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe-----cCCCceEEEEcCCCCEEEEe
Confidence 2233333222 235554433210 111 11111 12356689999999999998
Q ss_pred e--CCeEEEEEcCCce------------eEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC----------c
Q 001403 813 S--GGVISLYIVMTFK------------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----------S 868 (1084)
Q Consensus 813 s--dg~i~vwd~~~~~------------~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~----------~ 868 (1084)
+ +++|.++|+.+.+ ...... -......++|+| +|...++..-|++|.+||+.+ .
T Consensus 295 ~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~ 372 (595)
T 1fwx_A 295 GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVD 372 (595)
T ss_dssp CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCC
T ss_pred CCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccc
Confidence 7 5889999999763 233332 345688999999 776666777899999999987 4
Q ss_pred eeeeeecccccCE-----EEEEEcCCCCEEEEEeC---CCc----------EEEEeCCCCceee
Q 001403 869 EVISKLEGHSKRV-----TGLVFSDALNILVSSGG---DAQ----------IFVWDVDGWGIQT 914 (1084)
Q Consensus 869 ~~~~~l~~h~~~V-----~~l~~spd~~~l~s~s~---dg~----------I~iwd~~~~~~~~ 914 (1084)
+.+.++..|-.+- .++.++|||++|+++.. |+. -.++|+++++...
T Consensus 373 ~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~l 436 (595)
T 1fwx_A 373 PIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVL 436 (595)
T ss_dssp CEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred eeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEE
Confidence 5666666554321 22356899999998753 442 2889997666433
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-08 Score=114.22 Aligned_cols=229 Identities=9% Similarity=0.005 Sum_probs=156.1
Q ss_pred cEEEecC-----CCCEEEEEe--CCeEEEEEcCCceeEEEEcCC-CCCeEEEEE-c-CCCCcEEEEEe------------
Q 001403 798 PCFALSK-----NDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAF-N-PHDNNVIAIGM------------ 855 (1084)
Q Consensus 798 ~~l~~s~-----dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~-s-~~d~~~la~g~------------ 855 (1084)
...+.|. ||+++.+.. ++.|.+.|+.+.++...+.-. ...+..+++ + | +++++++++
T Consensus 88 hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~ 166 (595)
T 1fwx_A 88 HHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTN 166 (595)
T ss_dssp CCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSS
T ss_pred CccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcc
Confidence 3356665 899999887 477999999999988855433 346788888 5 8 788888774
Q ss_pred ------CCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCC-----------------------------
Q 001403 856 ------DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA----------------------------- 900 (1084)
Q Consensus 856 ------~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg----------------------------- 900 (1084)
.++.+.+.|..+.+.+.++.--. ....++++|||+++++.+.+.
T Consensus 167 l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v 245 (595)
T 1fwx_A 167 MEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI 245 (595)
T ss_dssp TTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred cccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEec
Confidence 34589999999998888776322 346688999999999988653
Q ss_pred ---------cEEEEeCCC--CceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcc-------
Q 001403 901 ---------QIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT------- 960 (1084)
Q Consensus 901 ---------~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~i~vwd~~~~~------- 960 (1084)
.|.|.|..+ +... ...+... ....++.++|||++++++ .+++|.++|+.+.+
T Consensus 246 ~~Gk~~~i~~V~VID~~~~~~~~~-~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l 317 (595)
T 1fwx_A 246 AAGDYQELNGVKVVDGRKEASSLF-TRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA 317 (595)
T ss_dssp HHTCSEEETTEEEEECSGGGCCSS-EEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC
T ss_pred cCCCeeEECcEEEEeCcccCCcee-EEEEecC-------CCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccccc
Confidence 356666665 2210 1112111 135579999999999986 56789999999764
Q ss_pred -----eeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC----------CceeEEeccccccCCCCcccceee
Q 001403 961 -----CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------LEVQCRILSTAYLRPTTSCLHVYP 1025 (1084)
Q Consensus 961 -----~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~v~~ 1025 (1084)
....... ......++|++||...++...|+.|.+||+.+ ...+.++..+ +-+. ..-.+
T Consensus 318 ~~~~~v~~~v~v--G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqpG----h~~~~ 390 (595)
T 1fwx_A 318 DPRSAVVAEPEL--GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQPG----HLKTV 390 (595)
T ss_dssp CGGGGEEECCBC--CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCEE----EEEET
T ss_pred CcccceEEEcCC--CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-cccc----cceec
Confidence 2233222 45678999999995455667899999999988 4455555421 1111 01122
Q ss_pred eEEEECCCCCCEEEEEeCC
Q 001403 1026 HAIAAHPLKPTQFAVGLTN 1044 (1084)
Q Consensus 1026 ~~~~~~p~d~~~l~~~~~d 1044 (1084)
+.++.+| ||++|+++..-
T Consensus 391 ~g~t~~~-DGk~l~~~Nk~ 408 (595)
T 1fwx_A 391 MGETLDA-TNDWLVCLSKF 408 (595)
T ss_dssp TTTSTTC-CSSEEEEEESC
T ss_pred cceEeCC-CCCEEEEcCCC
Confidence 3345677 68888887653
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=6e-10 Score=123.76 Aligned_cols=190 Identities=7% Similarity=-0.039 Sum_probs=112.5
Q ss_pred CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001403 399 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 478 (1084)
Q Consensus 399 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~ 478 (1084)
++..+++++.|+.|..||..+|+.+- .+.. +.+.+..+..++. ++++++.|+.|+.||.++|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W---~~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW---TLKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE---EEEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE---EecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 57889999999999999999997654 3333 4565666667777 677778899999999999998777654422
Q ss_pred cEEEEeecccC-CCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc
Q 001403 479 PVYSLCPHAKE-NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557 (1084)
Q Consensus 479 ~v~~~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~ 557 (1084)
... ...|.- ++..+++++.++.+..||..+++....+..+. ...++|++..+++++. ++.|+.||..+|
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 110 001111 23578888999999999999988877665443 2345678888888775 677999999999
Q ss_pred eEeeeeeccccccCceEEEEEcCCC---CEEEEEECCCcEEEEECCCCeEEEEEcC
Q 001403 558 AIKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIWDMNKVQLLTTIDA 610 (1084)
Q Consensus 558 ~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 610 (1084)
+.+..+.... .....+.++. ..+++++.||.|+.||..+|+.+.....
T Consensus 151 ~~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 8876665322 1222333332 5677889999999999999999887764
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=0.00027 Score=83.32 Aligned_cols=474 Identities=9% Similarity=-0.047 Sum_probs=240.4
Q ss_pred CCcEEEEECCCCc-eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc-eEeecCCCCeEEEEEEcCCC
Q 001403 456 DKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANG 533 (1084)
Q Consensus 456 d~~i~vwd~~~g~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~ 533 (1084)
...|+..|+.... ....+...-.....++|++. ++.++++-...+.|..++++.... ...+...-.....+++.+.+
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~-~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETT-TTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeC-CCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 5668888877553 12222223344677888653 334555555578898888876532 23333333578899999988
Q ss_pred CEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeEEEEEcCC
Q 001403 534 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTTIDAG 611 (1084)
Q Consensus 534 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~ 611 (1084)
..|+.+.. +.+.|.+.++............- .....+++.|.+..|+.+.. .+.|...++...........
T Consensus 96 ~~ly~~d~---~~~~I~v~~~dG~~~~~l~~~~l---~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~- 168 (619)
T 3s94_A 96 EKLYWTDS---ETNRIEVSNLDGSLRKVLFWQEL---DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS- 168 (619)
T ss_dssp TEEEEEET---TTTEEEEEETTSCSCEEEECSSC---SCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS-
T ss_pred CEEEEEeC---CCCEEEEEECCCCCEEEEEeCCC---CCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeC-
Confidence 87777653 35679999987543322222222 45788999998777766553 46777777764433333322
Q ss_pred CCCCCcceEEEecCCCEEEEEEC-CCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCC
Q 001403 612 GGLPENPRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV 690 (1084)
Q Consensus 612 ~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~ 690 (1084)
.......+++++++..|..+.. .+.|..+++..........+....-..+++...
T Consensus 169 -~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~----------------------- 224 (619)
T 3s94_A 169 -EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED----------------------- 224 (619)
T ss_dssp -SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-----------------------
T ss_pred -CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-----------------------
Confidence 2234578999997666666654 567888887654222211111111112222211
Q ss_pred CccceecccCccccccceeecCccceeeccCCccccceEEEEEE-ecCCCeEE--Eee----cCCceEEeeccCCccCcC
Q 001403 691 KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY-NNGGQAIF--ALA----SNGVHLMWRWPRNDLTLS 763 (1084)
Q Consensus 691 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-s~~g~~l~--~~~----~dg~i~vw~~~~~~~~~~ 763 (1084)
...++-...+.|...+...+... ..+. . .......+++ ++..+... .+. .-..+.+
T Consensus 225 ~ly~td~~~~~V~~~d~~tg~~~--~~i~-~---~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl----------- 287 (619)
T 3s94_A 225 ILYWTDWSTHSILACNKYTGEGL--REIH-S---DIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCL----------- 287 (619)
T ss_dssp EEEEECTTTCSEEEEESSSCCCC--EECC-S---CCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEE-----------
T ss_pred EEEEecCCCCEEEEEECCCCccc--EEEe-c---CCCCCcEEEEEccccCCCccccccCCCCcccceEE-----------
Confidence 12222222233333332211110 0000 0 0001111111 11100000 000 0000110
Q ss_pred cccceecCCeeecCCCC----CccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEE-EEcC-CCCC
Q 001403 764 TEATTKVPPRLYQPRHG----PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL-TIMP-PSPT 837 (1084)
Q Consensus 764 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~-~~~~-~~~~ 837 (1084)
-.+..+ .|.....+ .....+|. .....+|+.+..+.|+..++....... .+.. .-..
T Consensus 288 -----------~~~~~~~~~C~C~~g~~l----~~d~~~C~--~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~ 350 (619)
T 3s94_A 288 -----------MSPVKPFYQCACPTGVKL----LENGKTCK--DGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRH 350 (619)
T ss_dssp -----------ECSSTTSEEEECCTTCCB----CTTSSCBC--SSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSS
T ss_pred -----------CCCCCCCceEeCCchhee----cccCcccC--CCCceEEEEEcccceEEEecCCCccceeEEeccccCc
Confidence 000000 00000001 01111221 112346777777788888887654321 2221 2246
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceeeee
Q 001403 838 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCR 916 (1084)
Q Consensus 838 i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd-~~~l~s~s~dg~I~iwd~~~~~~~~~~ 916 (1084)
+.+++|.+.++.++.+-...+.|+.+++........+...-.....+++.+. +++.++-+..+.|.+.+++......
T Consensus 351 ~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~-- 428 (619)
T 3s94_A 351 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI-- 428 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--
T ss_pred cEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE--
Confidence 7899999845555555556789999998764433333333345678999864 4455565667889999998643211
Q ss_pred eeecCCCCccCCCCceEEEEccCCCEEEEE---eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEe-CCC
Q 001403 917 SLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-VDG 992 (1084)
Q Consensus 917 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~---~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~dg 992 (1084)
++.. +. .....+++.|...+|..+ ....|...++. |.....+....-.....|++++++..|+.+. ..+
T Consensus 429 l~~~--~l----~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~ 501 (619)
T 3s94_A 429 LISE--DL----EEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTD 501 (619)
T ss_dssp EECT--TC----CSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred EEEC--CC----CCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCC
Confidence 1211 11 247899999975555543 23567777765 4333333333355778999998776666654 446
Q ss_pred cEEEEEcCCCce
Q 001403 993 TLSIHEASNLEV 1004 (1084)
Q Consensus 993 ~i~vwd~~~~~~ 1004 (1084)
.|...++.....
T Consensus 502 ~I~~~~~dG~~~ 513 (619)
T 3s94_A 502 KIEVMNTDGTGR 513 (619)
T ss_dssp EEEEEESSSCCC
T ss_pred EEEEEecCCCce
Confidence 798899875543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=0.0003 Score=82.99 Aligned_cols=528 Identities=9% Similarity=-0.028 Sum_probs=271.5
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE-eCCCEEEEEEccCCccccceeeeecccccEeEEEeec
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 443 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~-~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~ 443 (1084)
..|+.-++.+...... +.-..-..+..++|++++..|..+ ..++.|..+++++..... .+.........+++.+
T Consensus 15 ~~I~~i~l~~~~~~~~--~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~---v~~~g~~~P~GlAvD~ 89 (628)
T 4a0p_A 15 ADIRRISLETNNNNVA--IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH---VVEFGLDYPEGMAVDW 89 (628)
T ss_dssp TEEEEEESSCTTCEEE--CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEET
T ss_pred CcEEEEECCCCCcceE--EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE---EEeCCCCCcceEEEEe
Confidence 5677777765432111 111123468899999976666655 457889999987653211 2222224567899987
Q ss_pred CCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEE-ecCCeEEEEECCCCCceEeecCCCC
Q 001403 444 PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAPGL 522 (1084)
Q Consensus 444 d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~ 522 (1084)
.+.. +.++-...+.|.+.++........+...-.....+++.|. +|.++++- +..+.|...+++........ ....
T Consensus 90 ~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~ 166 (628)
T 4a0p_A 90 LGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVG 166 (628)
T ss_dssp TTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCS
T ss_pred CCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCC
Confidence 7764 4455556788999997654432223234455688888653 33444443 23567888887765544333 3445
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 001403 523 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 602 (1084)
Q Consensus 523 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 602 (1084)
....++++++++.|+.+-. +.+.|...|+..... ..+.... .....+++.. +..+++-...+.|...|..+|
T Consensus 167 ~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l---~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 167 RANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDL---PHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp SEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECC---SCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccC---CCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 6789999999888888753 356789998875443 3333222 3456777754 333344445788888888777
Q ss_pred eEEEEEcCCCCCCCcceEE-EecCCCEEEEEECCCeEEEEEcCCCCeeee-ccccccceeEEEEcCCCceeeeeccCcee
Q 001403 603 QLLTTIDAGGGLPENPRIC-FNKNGTLLAVIANENRIKILETPESNSVDA-AGVLSDNLRKLSVNPISTVTGAGIANGSV 680 (1084)
Q Consensus 603 ~~~~~~~~~~~~~~v~~v~-~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~~~~~~~~~~ 680 (1084)
+....+..... ....+. +++..+. +.+... ..++.+-.. +....+... ..+|.+..+..... .
T Consensus 239 ~~~~~l~~~~~--~p~~i~v~~~~~q~---~~n~C~-----~~ng~C~~~C~~~~~~~~~--C~C~~g~~l~~d~~---~ 303 (628)
T 4a0p_A 239 QNRTIIQGHLD--YVMDILVFHSSRQS---GWNECA-----SSNGHCSHLCLAVPVGGFV--CGCPAHYSLNADNR---T 303 (628)
T ss_dssp CSCEEEECSCC--SCCEEEEECGGGSC---CCCTTT-----TTGGGCSSEEEEETTTEEE--EECSTTCEECTTSS---C
T ss_pred CceEEEecCCC--Ccceeeeeeecccc---cceEec-----cCCCCcchhhhcCCCCCee--EEcCCCcEecccCC---c
Confidence 66555543211 122332 2221110 000000 000000000 000000000 11122111110000 0
Q ss_pred EecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeec-CCceEEeeccCCc
Q 001403 681 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWPRND 759 (1084)
Q Consensus 681 ~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~vw~~~~~~ 759 (1084)
.. +...+++.+. ...|+-..+.... .....++. .....+.+++|.+....|+.+.. .+.|..++.....
T Consensus 304 C~-----~~~~~Ll~s~-~~~i~~i~l~~~~---~~~~~l~~-~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~ 373 (628)
T 4a0p_A 304 CS-----APTTFLLFSQ-KSAINRMVIDEQQ---SPDIILPI-HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQ 373 (628)
T ss_dssp EE-----CCSSEEEEEE-TTEEEEECCCTTC---CCCEECCC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred Cc-----cccceeeeec-cceEEEEeccccc---CceEEEEe-hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCC
Confidence 00 1112222222 2233322222110 00111111 12345778999987776766554 4566655433211
Q ss_pred cCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--CCeEEEEEcCCceeEEEE-cCCCC
Q 001403 760 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTI-MPPSP 836 (1084)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~-~~~~~ 836 (1084)
. .. +.............+..+++...++.|..++ .+.|.+.++. |+....+ ...-.
T Consensus 374 ~-----------~~---------v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~ 432 (628)
T 4a0p_A 374 G-----------FT---------VVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQD 432 (628)
T ss_dssp C-----------EE---------EEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTC
T ss_pred c-----------eE---------EEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCC
Confidence 0 00 0000000000234578999999888777665 4789999986 4444443 33446
Q ss_pred CeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcee
Q 001403 837 TATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQ 913 (1084)
Q Consensus 837 ~i~~l~~s~~d~~~la~g~~dg--~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s-~dg~I~iwd~~~~~~~ 913 (1084)
...++++.|..+.++.+-.... .|...+++...........-...+.|++.++++.|..+. ..+.|...+++.....
T Consensus 433 ~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~ 512 (628)
T 4a0p_A 433 RPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRI 512 (628)
T ss_dssp CEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred ceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceE
Confidence 7899999995565555543333 577777753322222232334678999999877776554 4578999999764322
Q ss_pred eeeeeecCCCCccCCCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcceeeE
Q 001403 914 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQ 964 (1084)
Q Consensus 914 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~i~vwd~~~~~~~~~ 964 (1084)
. ....... ....+++.. + .|..+ ..+.|...|..+|+....
T Consensus 513 ~--~~~~~~~------~P~glav~~-~-~ly~tD~~~~~i~~~~k~~G~~~~~ 555 (628)
T 4a0p_A 513 V--LEDSNIL------QPVGLTVFE-N-WLYWIDKQQQMIEKIDMTGREGRTK 555 (628)
T ss_dssp E--EECSSCS------CEEEEEEET-T-EEEEEETTTTEEEEEETTSSSCCEE
T ss_pred E--EEcCCCC------CcEEEEEEC-C-EEEEEECCCCeEEEEECcCCCCcEE
Confidence 1 1111111 245666644 3 33332 455677777666664443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.9e-08 Score=106.31 Aligned_cols=220 Identities=11% Similarity=0.070 Sum_probs=146.4
Q ss_pred CCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEE
Q 001403 805 NDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 884 (1084)
Q Consensus 805 dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l 884 (1084)
++...+...++.+..+|.. ++.......+...+.++...+ ++. |.+|+.++.|..||.. ++.+..+......+.++
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~ 182 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAA 182 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeee
Confidence 5544444347899999998 777777665666667777877 565 5568888999999998 88777766556667778
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeE
Q 001403 885 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ 964 (1084)
Q Consensus 885 ~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~ 964 (1084)
.+.+++.+.+.. +.|..+| .+++.... ... .. ..+.++...++|.+.+.+.++.|..+|. +++.+..
T Consensus 183 ~~d~~g~l~v~t---~~l~~~d-~~g~~~~~--~~~--~~----~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~ 249 (330)
T 3hxj_A 183 SIGKDGTIYFGS---DKVYAIN-PDGTEKWN--FYA--GY----WTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWR 249 (330)
T ss_dssp EECTTCCEEEES---SSEEEEC-TTSCEEEE--ECC--SS----CCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEE
T ss_pred EEcCCCEEEEEe---CEEEEEC-CCCcEEEE--Ecc--CC----cceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEE
Confidence 887788766543 7799999 55543221 111 11 2477888999998877777888988874 5666655
Q ss_pred eecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCC
Q 001403 965 WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN 1044 (1084)
Q Consensus 965 ~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~d 1044 (1084)
... ....+..+.+.++|. |..++.+|.|..+|. +++....+... ...+. ++..++ +..|.+|+.+
T Consensus 250 ~~~-~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~--------~~~~~--~~~~d~--~g~l~~gt~~ 314 (330)
T 3hxj_A 250 FKT-GKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETG--------SWIIA--TPVIDE--NGTIYFGTRN 314 (330)
T ss_dssp EEC-SSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECS--------SCCCS--CCEECT--TCCEEEECTT
T ss_pred eeC-CCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcC--------Ccccc--ceEEcC--CCEEEEEcCC
Confidence 432 233344556666664 666778889999996 67776555421 11222 234554 3567789999
Q ss_pred CcEEEEcCCCCC
Q 001403 1045 GEVYVIEPNEPG 1056 (1084)
Q Consensus 1045 g~v~vw~~~~~~ 1056 (1084)
|.+++.......
T Consensus 315 G~~~~~~~~~~~ 326 (330)
T 3hxj_A 315 GKFYALFNLEHH 326 (330)
T ss_dssp SCEEEEEC----
T ss_pred CeEEEEeccccc
Confidence 999998775543
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=4e-10 Score=125.16 Aligned_cols=191 Identities=8% Similarity=0.051 Sum_probs=108.0
Q ss_pred CCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCcc
Q 001403 847 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT 926 (1084)
Q Consensus 847 d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 926 (1084)
++..+++++.||.|+.||..+|+.+.++.. +.+.+..+.+++..+++++.||.|+.||..+|+............ ..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~-~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL-VQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH-HT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc-cc
Confidence 456888999999999999999999988876 556666667788888888899999999998876432211110000 00
Q ss_pred CCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeE
Q 001403 927 LAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1006 (1084)
Q Consensus 927 ~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~ 1006 (1084)
.+..++.++..++.+.++.|+.||..+|+.+..+.. +. ...++|++..+++++.|+.|+.||..+|+.+.
T Consensus 85 -----~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 85 -----ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSS-AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp -----TCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred -----cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecC-CC----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 011112344433336789999999999998876442 21 24567788899999999999999999998876
Q ss_pred EeccccccCCCCcccceeeeEEEECCC--CCCEEEEEeCCCcEEEEcCCCCCCCcccC
Q 001403 1007 RILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1062 (1084)
Q Consensus 1007 ~~~~~~~~~~~~~~~~v~~~~~~~~p~--d~~~l~~~~~dg~v~vw~~~~~~~~~~~~ 1062 (1084)
++....+.. .+++++ .+..+++++.||.|+.||....+..|...
T Consensus 155 ~~~~~~~~~------------~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 155 NATYFDYAA------------SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EEEEEEECC------------BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred eEecccccC------------ccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 654222111 112220 01567788999999999998777778654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=9.1e-07 Score=106.08 Aligned_cols=194 Identities=13% Similarity=0.138 Sum_probs=130.0
Q ss_pred CCeEEEEEcCCceeEEEEcCCC-------------------------------CCeEEEEEcCCCCcEEEEEeCCCe---
Q 001403 814 GGVISLYIVMTFKTILTIMPPS-------------------------------PTATSLAFNPHDNNVIAIGMDDST--- 859 (1084)
Q Consensus 814 dg~i~vwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~s~~d~~~la~g~~dg~--- 859 (1084)
++.|..+|..+|+.+..+.... .....++++| +..+++.++.++.
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 4677788888888776664210 0112468888 6678888887763
Q ss_pred ----------------EEEEEcCCceeeeeecc--cc-------cCEEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCc
Q 001403 860 ----------------ILIYNARSSEVISKLEG--HS-------KRVTGLVFSDALN---ILVSSGGDAQIFVWDVDGWG 911 (1084)
Q Consensus 860 ----------------i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~spd~~---~l~s~s~dg~I~iwd~~~~~ 911 (1084)
|..+|..+|+.+..++. |. .+.....+..+|+ .++.++.+|.++++|..+|+
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 99999999999877753 32 2333333444775 68889999999999999988
Q ss_pred eeeeeeeec---------CCCCc--------c------CC-----CCceEEEEccCCCEEEEE-----------------
Q 001403 912 IQTCRSLQT---------PDGVM--------T------LA-----PSETHIQFHKDQTRFLLV----------------- 946 (1084)
Q Consensus 912 ~~~~~~~~~---------~~~~~--------~------~~-----~~v~~~~~s~dg~~la~~----------------- 946 (1084)
......+.. ..+.. . .. ..-..++++|+..++.+.
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 415 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT 415 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccc
Confidence 652111100 00000 0 00 001237888887776651
Q ss_pred --------------------eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeE
Q 001403 947 --------------------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1006 (1084)
Q Consensus 947 --------------------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~ 1006 (1084)
.++.|.-||..+|+.+.+...+ .+.....++..|.++++++.||.+++||..+|+.+.
T Consensus 416 ~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW 493 (668)
T ss_dssp CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC--CCCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence 1277999999999988775432 333444555678899999999999999999999998
Q ss_pred Eecc
Q 001403 1007 RILS 1010 (1084)
Q Consensus 1007 ~~~~ 1010 (1084)
++..
T Consensus 494 ~~~~ 497 (668)
T 1kv9_A 494 QFEA 497 (668)
T ss_dssp EEEC
T ss_pred EecC
Confidence 8873
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=5.2e-06 Score=87.40 Aligned_cols=247 Identities=12% Similarity=0.056 Sum_probs=153.7
Q ss_pred ceEEEEEcCCccccc-e-eeeecCCCCCeEEEEEcCCCCEEEEEe-CCCEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLF-K-TALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~-~-~~~~~~h~~~V~~v~fspdg~~las~~-~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
+.|+.+++....... . ..++......+..++|++++..|..+. .++.|.+++..++.... .+.........+++
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~ 86 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIAL 86 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEE
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEE
Confidence 567777776543210 0 111221234578999999776666554 56789999998764221 12222246789999
Q ss_pred ecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEec---CCeEEEEECCCCCceEeec
Q 001403 442 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYD 518 (1084)
Q Consensus 442 s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~ 518 (1084)
++++.. +.++....+.|.++++..................+++++ ++..|+.+.. .+.|..++++.........
T Consensus 87 d~~~~~-lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~--~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~ 163 (267)
T 1npe_A 87 DHLGRT-IFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP--VRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ 163 (267)
T ss_dssp ETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET--TTTEEEEEECCSSSCEEEEEETTSCCCEEEEC
T ss_pred EecCCe-EEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEee--CCCEEEEEECCCCCcEEEEEecCCCCcEEEEE
Confidence 998764 445555678999999764432222222224567888854 3334444443 4688888887544333332
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEE
Q 001403 519 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIW 597 (1084)
Q Consensus 519 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw 597 (1084)
........+++++++..|+.+.. +.+.|.++|.........+.+. .....++.. +..++.+. ..+.|.++
T Consensus 164 ~~~~~P~gia~d~~~~~lyv~d~---~~~~I~~~~~~g~~~~~~~~~~----~~P~gi~~d--~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 164 DNLGLPNGLTFDAFSSQLCWVDA---GTHRAECLNPAQPGRRKVLEGL----QYPFAVTSY--GKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp TTCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTEEEEEEEEECC----CSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred CCCCCCcEEEEcCCCCEEEEEEC---CCCEEEEEecCCCceEEEecCC----CCceEEEEe--CCEEEEEECCCCeEEEE
Confidence 33346789999999888877653 3567999998765544433322 234566654 45565555 56899999
Q ss_pred ECCCCeEEEEEcCCCCCCCcceEEEecCCC
Q 001403 598 DMNKVQLLTTIDAGGGLPENPRICFNKNGT 627 (1084)
Q Consensus 598 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 627 (1084)
|..+++.+..+..... +....+++.|++.
T Consensus 235 d~~~g~~~~~i~~g~~-~~p~gi~~~~~~~ 263 (267)
T 1npe_A 235 DLAISKEMDTFHPHKQ-TRLYGITIALSQC 263 (267)
T ss_dssp ETTTTEEEEEECCSSC-CCCCCEEEECSCC
T ss_pred eCCCCCceEEEccccc-cccceeeecCccC
Confidence 9999999988864321 2357788888764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=8.3e-06 Score=85.81 Aligned_cols=255 Identities=11% Similarity=0.015 Sum_probs=154.1
Q ss_pred CEEEEEeCCCEEEEEEccCCcccc--ceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001403 401 SLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 478 (1084)
Q Consensus 401 ~~las~~~dg~v~iwd~~~~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~ 478 (1084)
.+|..+.. +.|+.+++++..... ....+......+..++|+++++. ++++...++.|.++++..+.....+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 45555553 468889988654211 01112222345789999997764 445555678999999876654333333334
Q ss_pred cEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCce
Q 001403 479 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 558 (1084)
Q Consensus 479 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~ 558 (1084)
....+++.+. ++.++++....+.|.+++++.................++++|++..|+.+.... ..+.|..+++....
T Consensus 80 ~p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 80 SPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGTN 157 (267)
T ss_dssp CEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSCC
T ss_pred CccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCCC
Confidence 6788888543 234555556678999999876443333333334678999999877776664321 13568887765332
Q ss_pred EeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEE-CCC
Q 001403 559 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NEN 636 (1084)
Q Consensus 559 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg 636 (1084)
...+.... ......+++++++..|+.+. ..+.|.++|.........+... .....++.. +..+.++. ..+
T Consensus 158 -~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d--~~~lyva~~~~~ 229 (267)
T 1npe_A 158 -RRILAQDN--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY--GKNLYYTDWKTN 229 (267)
T ss_dssp -CEEEECTT--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE--TTEEEEEETTTT
T ss_pred -cEEEEECC--CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe--CCEEEEEECCCC
Confidence 22222111 24578999999887776654 5688999999765544444321 123456554 44555554 568
Q ss_pred eEEEEEcCCCCeeeeccccc-cceeEEEEcCC
Q 001403 637 RIKILETPESNSVDAAGVLS-DNLRKLSVNPI 667 (1084)
Q Consensus 637 ~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~p~ 667 (1084)
.|..++..+++.+..+.... .....+++.|+
T Consensus 230 ~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 230 SVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred eEEEEeCCCCCceEEEccccccccceeeecCc
Confidence 99999999887776664322 12344455443
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-06 Score=105.24 Aligned_cols=376 Identities=12% Similarity=0.111 Sum_probs=205.3
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCc----------E-EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP----------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 517 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~----------v-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 517 (1084)
.++.++.++.|.-+|.++|+.+-++...... + ..+++ .+..++.++.|+.|..+|..+++.+...
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 4666677889999999999998776533211 0 11222 2357888899999999999999988766
Q ss_pred cCCCC-eEEEEEEcC--CCCEEEEEeeCC--CCCeeEEEecCCCceEeeeeecccc------------------------
Q 001403 518 DAPGL-GCTRMAYSA--NGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL------------------------ 568 (1084)
Q Consensus 518 ~~~~~-~i~~~~~s~--d~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~------------------------ 568 (1084)
..... ....+..+| .+..++++.... ..++.|+.+|..+|+.+..+.....
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 54211 000000111 133455443211 1257899999999999887753110
Q ss_pred ----ccCceEEEEEcCCCCEEEEEECCC-------------------cEEEEECCCCeEEEEEcCCCCC-------CCcc
Q 001403 569 ----QHNSVSVVHFDTAKDQILAAGDDH-------------------VIKIWDMNKVQLLTTIDAGGGL-------PENP 618 (1084)
Q Consensus 569 ----~~~~v~~~~~s~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~~v~ 618 (1084)
.......+++.|+...++.++.++ .|..+|..+|+.+..++...+. ....
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~ 303 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence 001112468888888998888766 3999999999999888753221 1111
Q ss_pred eEEEecCCC---EEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccce
Q 001403 619 RICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 695 (1084)
Q Consensus 619 ~v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 695 (1084)
...+..+|+ .+++++.+|.++++|..+++.+......... +...+.+. .+...+......+++
T Consensus 304 ~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~d~~---------~g~p~~~~~~~~~~~---- 369 (668)
T 1kv9_A 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVT-WAEKVDLA---------TGRPVEAPGVRYEKE---- 369 (668)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCC-SEEEECTT---------TCCEEECTTTTCSSS----
T ss_pred EEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccc-cccccccc---------cCCccccccccccCC----
Confidence 222334665 6888999999999999999887654322210 00111100 000001000000000
Q ss_pred ecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeee
Q 001403 696 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 775 (1084)
Q Consensus 696 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 775 (1084)
..+..+.......-..++++|+...+++...+-....... . ..|
T Consensus 370 --------------------~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~-~---------------~~~ 413 (668)
T 1kv9_A 370 --------------------PIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNE-G---------------KDF 413 (668)
T ss_dssp --------------------CEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCC-G---------------GGC
T ss_pred --------------------eeEECCCCccccCCCcceECCCCCEEEEeccccceEeeee-c---------------ccc
Confidence 0011111000111123678888877776655422221100 0 001
Q ss_pred cCCCCCccccccCcCCCCCCCccEEEecCCCCEEE-EEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEE
Q 001403 776 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF-SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 853 (1084)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~-~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~ 853 (1084)
....+. . .... + .+..++ ... +|.|..||+.+++.+.....+. ......+.. .+.++++
T Consensus 414 ~~~~~~------~----~g~~-----~--~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~vf~ 474 (668)
T 1kv9_A 414 VTRKAF------N----TAAG-----F--ADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQ 474 (668)
T ss_dssp CCCSSC------C----CSSC-----G--GGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEE
T ss_pred cccccc------c----cCcc-----c--cccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEe-CCCEEEE
Confidence 000000 0 0000 0 011111 122 4789999999999887765433 222233444 4668888
Q ss_pred EeCCCeEEEEEcCCceeeeeecccccCE-EEEEEcCCCC-EEEEEe
Q 001403 854 GMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-ILVSSG 897 (1084)
Q Consensus 854 g~~dg~i~iwd~~~~~~~~~l~~h~~~V-~~l~~spd~~-~l~s~s 897 (1084)
|+.||.++.||..+|+.+..+....+.. .-+.+..+|+ +++.++
T Consensus 475 g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 475 GTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred ECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 9999999999999999998876543211 2234455676 444433
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=6.2e-06 Score=96.36 Aligned_cols=166 Identities=14% Similarity=0.180 Sum_probs=107.0
Q ss_pred EEEEcCCCCcEEEEEeCC----------------CeEEEEEcCCceeeeeecc--cc--------cCEEEEEEc-CCC--
Q 001403 840 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DAL-- 890 (1084)
Q Consensus 840 ~l~~s~~d~~~la~g~~d----------------g~i~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-pd~-- 890 (1084)
.+++.+ ...+++.+..+ +.|.-+|..+|+.+..++. |. .++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 356667 55577777655 3899999999999877654 21 1222 2222 567
Q ss_pred -CEEEEEeCCCcEEEEeCCCCceeeeeeeec----------CCCCcc----------C-----------CCCceEEEEcc
Q 001403 891 -NILVSSGGDAQIFVWDVDGWGIQTCRSLQT----------PDGVMT----------L-----------APSETHIQFHK 938 (1084)
Q Consensus 891 -~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~----------~~~~~~----------~-----------~~~v~~~~~s~ 938 (1084)
+.++.++.+|.+.+.|..+|+..-...+.. ..+... . ...-..++++|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 567788999999999999988654322111 000000 0 00113567888
Q ss_pred CCCEEEEE----------------------------------------eCCeEEEEEcCCcceeeEeecCCCCCEEEEEE
Q 001403 939 DQTRFLLV----------------------------------------HETHLAIYEAEELTCLKQWFPISSVPISQATF 978 (1084)
Q Consensus 939 dg~~la~~----------------------------------------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~f 978 (1084)
+..++.+. ..+.|.-||+.+|+.+.+...+ .++..-.+
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~ 480 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTM 480 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCE
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcce
Confidence 77766552 2357888999999988775432 12221123
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 979 SCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 979 s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
...|.+++.++.||.++.||.++|+.+.++.
T Consensus 481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 3456788889999999999999999998876
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.79 E-value=0.0016 Score=82.13 Aligned_cols=575 Identities=8% Similarity=-0.018 Sum_probs=287.9
Q ss_pred cceEEEEEcCCccccceeeeecCCCCCeEEEEEc---CCCCEEEEEeCCCEEEEEEccCCccccceeeeecc---cccEe
Q 001403 364 IRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS---PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH---VGNVN 437 (1084)
Q Consensus 364 ~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fs---pdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h---~~~V~ 437 (1084)
+|.+++..-.-........-+. .-..++.+... ....||+.+..+.+ .|+.+... .+... ...+- ...+.
T Consensus 402 ~gsL~~lr~Gi~~~~~~~~~l~-gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev-~~~gf~~~~~TL~ 477 (1158)
T 3ei3_A 402 EGSLRIIRNGIGIHEHASIDLP-GIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEET-ELMGFVDDQQTFF 477 (1158)
T ss_dssp GCEEEEEEESBCEEEEEEECCC-SCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEE-CCTTCCSSSCEEE
T ss_pred CCeEEEEecCCCEEEEEeecCC-CccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-ccccc-ccccccCCCCcEE
Confidence 3677766543222111111122 23566666653 24678888877776 55555322 12211 11111 11121
Q ss_pred EEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccC-CCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE-
Q 001403 438 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV- 515 (1084)
Q Consensus 438 ~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~- 515 (1084)
+-.+ .++ .++=.. ...|++.+...+..+..+... ...|...+.. +..++.++ .+.+.++.++.++...
T Consensus 478 ~~~l-~~~---~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n----~~~vvva~-g~~l~~fel~~~~L~~~ 547 (1158)
T 3ei3_A 478 CGNV-AHQ---QLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCN----SSQVVVAV-GRALYYLQIHPQELRQI 547 (1158)
T ss_dssp EEEE-TTT---EEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEEC----SSEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred EEEc-CCC---eEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeC----CCEEEEEE-CCEEEEEEeeCCceeee
Confidence 1111 222 233222 345778887666667677543 2346555542 23555554 6788888776532111
Q ss_pred eecCCCCeEEEEEEcCC------CCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEc--CCCCEEEE
Q 001403 516 DYDAPGLGCTRMAYSAN------GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD--TAKDQILA 587 (1084)
Q Consensus 516 ~~~~~~~~i~~~~~s~d------~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~ 587 (1084)
....-...|.|+++.|. +++++++.. .++.++++++.+.+.+....-.. .....++.+. ....++.+
T Consensus 548 ~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~---~d~tv~I~sL~~l~~~~~~~L~~--~~~p~si~l~~~~~~~~L~i 622 (1158)
T 3ei3_A 548 SHTEMEHEVACLDITPLGDSNGLSPLCAIGLW---TDISARILKLPSFELLHKEMLGG--EIIPRSILMTTFESSHYLLC 622 (1158)
T ss_dssp EEEECSSCEEEEECCCCSSSTTCCSEEEEEET---TTTEEEEEETTTCCEEEEEECCS--SCCEEEEEEEEETTEEEEEE
T ss_pred cccCCCCceEEEEeecCCCCcccccEEEEEEC---CCCEEEEEECCCCCeEEEEECCC--CCCCcEEEEEEeCCCcEEEE
Confidence 11122447899998763 367777763 25679999998766654433211 0123333332 23457888
Q ss_pred EECCCcEEEEEC--CCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeecccccccee-EEEE
Q 001403 588 AGDDHVIKIWDM--NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLR-KLSV 664 (1084)
Q Consensus 588 ~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~-~~~~ 664 (1084)
|-.||.+.-+.+ .+|++...-...-+..++.-..+...+..-+.+..+....++.....-.+..+. ...+. ...|
T Consensus 623 gl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~--~~~v~~~~~F 700 (1158)
T 3ei3_A 623 ALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVN--LKEVNYMCPL 700 (1158)
T ss_dssp EETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBS--SSCCCEEEEE
T ss_pred EeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccC--hHHhceEecc
Confidence 999999865544 456655332111112234444455455444444445555555543211111111 11111 1112
Q ss_pred cCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEe
Q 001403 665 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL 744 (1084)
Q Consensus 665 ~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 744 (1084)
+ ....|+| ++. ..++.+++..++.........+. -...+..++++|+.+.++.+
T Consensus 701 ~------------------se~~~~g--~v~-~~~~~LrI~~i~~~~~~~~~~ip-----L~~Tprri~y~~~~~~~~v~ 754 (1158)
T 3ei3_A 701 N------------------SDGYPDS--LAL-ANNSTLTIGTIDEIQKLHIRTVP-----LYESPRKICYQEVSQCFGVL 754 (1158)
T ss_dssp C------------------CSSSTTE--EEE-ECSSCEEEEEECCSSSEEEEEEE-----CSSEEEEEEEEGGGTEEEEE
T ss_pred C------------------cccCCCc--EEE-EcCCceEEEEecccCCeeEEEEe-----CCCCceEEEEcCCCCEEEEE
Confidence 1 1111222 221 22344666665432221222222 23477899999998877666
Q ss_pred ecCCceEEeeccCC-----------------------------ccCcCcccceecCCeeecCCCCCccccccCcCCCCCC
Q 001403 745 ASNGVHLMWRWPRN-----------------------------DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE 795 (1084)
Q Consensus 745 ~~dg~i~vw~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1084)
..+... ++.... .....+.......+++.|+.+...+...++.. ..
T Consensus 755 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~---nE 829 (1158)
T 3ei3_A 755 SSRIEV--QDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ---NE 829 (1158)
T ss_dssp EEEEEE--ECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT---TE
T ss_pred EEeccc--cccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC---Cc
Confidence 543211 111000 00000111223567888888887666666643 34
Q ss_pred CccEEE---ecCC-CCEEEEEe-----------CCeEEEEEcCCceeEEEEc-CCCCCeEEEEEcCCCCcEEEEEeCCCe
Q 001403 796 AVPCFA---LSKN-DAYLFSAS-----------GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDST 859 (1084)
Q Consensus 796 ~v~~l~---~s~d-g~~l~~~s-----------dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~la~g~~dg~ 859 (1084)
.+.+++ |..+ ..++++|. .|.|.+|++..++...... ...+.+++++-- +|++|| |- ..+
T Consensus 830 ~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla-~i-g~~ 905 (1158)
T 3ei3_A 830 YALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLA-SI-NST 905 (1158)
T ss_dssp EEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEE-EE-TTE
T ss_pred ceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEE-Ec-CCE
Confidence 444444 3332 46787764 2679999987544322211 235678887754 455544 33 478
Q ss_pred EEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccC
Q 001403 860 ILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 939 (1084)
Q Consensus 860 i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 939 (1084)
|++|++...+.+..-..+-..|..+.....+.+++.|..-..|.+...+.............. . .+++++.|-.+
T Consensus 906 l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~--~---~~vta~~~ld~ 980 (1158)
T 3ei3_A 906 VRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFN--P---NWMSAVEILDD 980 (1158)
T ss_dssp EEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCS--C---BCEEEEEEEET
T ss_pred EEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecc--c---ccEEEEEEEcc
Confidence 999999866543311111122333333335788999988887877665432211111222211 1 26889999877
Q ss_pred CCEEEEEeCCeEEEEEcCCc-------ceeeEeecCC-CCCEEEEE---EccCC---------CEEEEEeCCCcEEEEEc
Q 001403 940 QTRFLLVHETHLAIYEAEEL-------TCLKQWFPIS-SVPISQAT---FSCDC---------RMVFTSFVDGTLSIHEA 999 (1084)
Q Consensus 940 g~~la~~~d~~i~vwd~~~~-------~~~~~~~~~h-~~~v~~l~---fs~dg---------~~l~t~~~dg~i~vwd~ 999 (1084)
+.++++-.++.+.+...... +.+.....-| ...|+++. +.+.+ ..++.++.+|.|.+.-.
T Consensus 981 ~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 981 DNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp TEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEE
T ss_pred CcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEE
Confidence 76666557788888876431 2222211112 45677765 23322 24677788998887643
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-06 Score=90.13 Aligned_cols=200 Identities=13% Similarity=0.089 Sum_probs=138.5
Q ss_pred CccEEEecCCCCEEEEEe---CCeEEEEEcCCceeEEEEcCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee
Q 001403 796 AVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 871 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~ 871 (1084)
....++|++|+.++++.+ ++.|+++|+.+++.+..+.-.. .....+++. ++++.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 357899999876555544 4789999999999998876322 233456665 3456666667899999999999998
Q ss_pred eeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCe
Q 001403 872 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 950 (1084)
Q Consensus 872 ~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~ 950 (1084)
.++..-... ...+++||+.|+.+..+++|.++|..+.+......+... +.. ...+..+.|. +|+..+.. .++.
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p--~~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHR--VIRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEE--CCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-Ccc--cccceeEEEE-CCEEEEecCCCCe
Confidence 888532111 244667888887777789999999998665443222211 111 0135677888 77555544 5789
Q ss_pred EEEEEcCCcceeeEeecCC------------CCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCc
Q 001403 951 LAIYEAEELTCLKQWFPIS------------SVPISQATFSCDCRMVF-TSFVDGTLSIHEASNLE 1003 (1084)
Q Consensus 951 i~vwd~~~~~~~~~~~~~h------------~~~v~~l~fs~dg~~l~-t~~~dg~i~vwd~~~~~ 1003 (1084)
|.+.|..+++.+..+..+- ......++|+|+++.|+ ++...+.+.+-++....
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 9999999999888764320 13568999999987555 55567888888877653
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.72 E-value=0.0026 Score=80.17 Aligned_cols=567 Identities=11% Similarity=0.092 Sum_probs=275.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEEccCCcc-----ccceeeeecccccEeEEEeecCC---CcEEEEEE---eCCCcE
Q 001403 391 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAPC---KQISVITC---GDDKTI 459 (1084)
Q Consensus 391 V~~v~fspdg~~las~~~dg~v~iwd~~~~~~-----~~~~~~l~~h~~~V~~l~~s~d~---~~l~l~s~---~~d~~i 459 (1084)
..++++-.+| +|..|+..|.=.+|.+..... +.....+ ..-++|.+++..... .. .++++ +.+|.+
T Consensus 329 ~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~-~i~~~sG~g~~gsL 405 (1158)
T 3ei3_A 329 AECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQG-QLVTCSGAFKEGSL 405 (1158)
T ss_dssp CSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCC-EEEEEECCGGGCEE
T ss_pred ccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCC-eEEEEECcCCCCeE
Confidence 3567666655 788888877767777664321 1212222 234688888875421 21 23333 246788
Q ss_pred EEEECCCC-ceee--EeccCCCcEEEEeecc-cCCCcEEEEEecCCeEEEEECCCCCceEeecCC-----CCeEEEEEEc
Q 001403 460 KVWDAVTG-SRTY--SFEGHGAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-----GLGCTRMAYS 530 (1084)
Q Consensus 460 ~vwd~~~g-~~~~--~~~~h~~~v~~~~~~~-~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~~~~s 530 (1084)
++..-.=+ +.+. .+. .-..++.+.... +....+|+....+.+ +++.+... ........ ...+.+-.+
T Consensus 406 ~~lr~Gi~~~~~~~~~l~-gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l- 481 (1158)
T 3ei3_A 406 RIIRNGIGIHEHASIDLP-GIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETELMGFVDDQQTFFCGNV- 481 (1158)
T ss_dssp EEEEESBCEEEEEEECCC-SCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEECCTTCCSSSCEEEEEEE-
T ss_pred EEEecCCCEEEEEeecCC-CccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccccccccCCCCcEEEEEc-
Confidence 88742211 1111 122 223455554321 123457777666655 45554321 22221111 111111111
Q ss_pred CCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE--EE
Q 001403 531 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TI 608 (1084)
Q Consensus 531 ~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~ 608 (1084)
.+ ..++=.. ...|++.+...+..+..+.... +..|...+.+. .+++.++ .+.+.++.+..+++.. ..
T Consensus 482 ~~-~~ivQVt-----~~~Irli~~~~~~~~~~w~~p~--~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~ 550 (1158)
T 3ei3_A 482 AH-QQLIQIT-----SASVRLVSQEPKALVSEWKEPQ--AKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHT 550 (1158)
T ss_dssp TT-TEEEEEE-----SSCEEEEESSSCCEEEEECCTT--CCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred CC-CeEEEEe-----cCEEEEEECCCCeEEEEEECCC--CCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeeccc
Confidence 22 2344333 2237777766555555554433 23566666543 4676665 6788888877664332 22
Q ss_pred cCCCCCCCcceEEEecC------CCEEEEEEC-CCeEEEEEcCCCCeeeeccccc-cceeEEEEcCCCceeeeeccCcee
Q 001403 609 DAGGGLPENPRICFNKN------GTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSV 680 (1084)
Q Consensus 609 ~~~~~~~~v~~v~~s~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~p~~~~~~~~~~~~~~ 680 (1084)
.. ...|.|+++.|. +.++++|.. |++++|+++.+.+.+....-.. ....++.+..
T Consensus 551 ~l---~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~-------------- 613 (1158)
T 3ei3_A 551 EM---EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTT-------------- 613 (1158)
T ss_dssp EC---SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEE--------------
T ss_pred CC---CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEE--------------
Confidence 22 235888888763 479999996 9999999998765543222111 1111121110
Q ss_pred EecCCCCCCCCccceecccCcccccccee--ecCccceeeccCCccccceEEEEEEecCCC-eEEEeecCCceEEeeccC
Q 001403 681 SVNEDPKEDVKPEISVEAENKSEVEKPLF--ARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPR 757 (1084)
Q Consensus 681 ~~~~~~s~~~~~l~~~~~d~~i~~w~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~ 757 (1084)
+ ....++..|-.||.+..+.++. +.........+. ..++.=..+...|. .+++++.. -..+|.-.
T Consensus 614 -~-----~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG----~~pv~L~~~~~~~~~~V~a~s~r-p~liy~~~- 681 (1158)
T 3ei3_A 614 -F-----ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG----TQPTVLRTFRSLSTTNVFACSDR-PTVIYSSN- 681 (1158)
T ss_dssp -E-----TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC----SSCCEEEEEESSSCEEEEEESSS-CEEEEESS-
T ss_pred -e-----CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC----CCceEEEEEeeCCceeEEEECCC-CEEEEEcC-
Confidence 0 0123344454555443333221 111111111110 11222222222232 23333322 22222111
Q ss_pred CccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEE-EecCC--CCEEEEEeCCeEEEEEcCCce--eEEEEc
Q 001403 758 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF-ALSKN--DAYLFSASGGVISLYIVMTFK--TILTIM 832 (1084)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l-~~s~d--g~~l~~~sdg~i~vwd~~~~~--~~~~~~ 832 (1084)
+. +....+ ....+..+ .|+.. ..-++..+++.++|..+.+.. .++++.
T Consensus 682 ----------------------~~-l~~s~l----~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ip 734 (1158)
T 3ei3_A 682 ----------------------HK-LVFSNV----NLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVP 734 (1158)
T ss_dssp ----------------------SS-EEEEEB----SSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEE
T ss_pred ----------------------Cc-eEEecc----ChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEe
Confidence 00 100001 11122222 23221 234555556668887775322 223332
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEeCC-------------------------------------------------CeEEEE
Q 001403 833 PPSPTATSLAFNPHDNNVIAIGMDD-------------------------------------------------STILIY 863 (1084)
Q Consensus 833 ~~~~~i~~l~~s~~d~~~la~g~~d-------------------------------------------------g~i~iw 863 (1084)
-...+..++++| ..+.++++..+ +.|++.
T Consensus 735 -L~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~li 812 (1158)
T 3ei3_A 735 -LYESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLII 812 (1158)
T ss_dssp -CSSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEE
T ss_pred -CCCCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEE
Confidence 335677788888 55544433211 246777
Q ss_pred EcCCceeeeeecc-cccCEEEEE---EcCC-CCEEEEEe----------CCCcEEEEeCCCCceeeeeeeecCCCCccCC
Q 001403 864 NARSSEVISKLEG-HSKRVTGLV---FSDA-LNILVSSG----------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 928 (1084)
Q Consensus 864 d~~~~~~~~~l~~-h~~~V~~l~---~spd-~~~l~s~s----------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 928 (1084)
|-.+.+.+..++- ....+.+++ |..+ ..+++.|+ ..|.|.++++..++.+. +...+ ..
T Consensus 813 dp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~l---v~~~~----v~ 885 (1158)
T 3ei3_A 813 DQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQT---VAEKE----VK 885 (1158)
T ss_dssp ETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEE---EEEEE----ES
T ss_pred eCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEE---EEEEE----cC
Confidence 7777766544431 122344443 4333 47888776 34789999998543222 21111 11
Q ss_pred CCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC--CCceeE
Q 001403 929 PSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS--NLEVQC 1006 (1084)
Q Consensus 929 ~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~--~~~~~~ 1006 (1084)
+.+++++-- +| +|+++-.++|++|++...+.+.. ...+-..|..+.....|.++++|..-..|.+...+ .+++.-
T Consensus 886 g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~~-~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~ 962 (1158)
T 3ei3_A 886 GAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEE 962 (1158)
T ss_dssp SCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEEE-EEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEE
T ss_pred CcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEEE-EeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEE
Confidence 256666533 24 77778889999999986554331 11111123333333357788888877777775544 333331
Q ss_pred EeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 1007 RILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 1007 ~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
+. .. ....+..++.+- |...++.++.+|++.+.....
T Consensus 963 -~a-~D-------~~~~~vta~~~l--d~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 963 -IA-RD-------FNPNWMSAVEIL--DDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp -EE-EC-------CSCBCEEEEEEE--ETTEEEEEETTSEEEEEEECT
T ss_pred -EE-ee-------cccccEEEEEEE--ccCcEEEEcCCCcEEEEecCC
Confidence 11 11 122344555554 246899999999999998855
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=7.6e-06 Score=95.88 Aligned_cols=167 Identities=9% Similarity=0.067 Sum_probs=108.0
Q ss_pred EEEEcCCCCcEEEEEeCC----------------CeEEEEEcCCceeeeeecc--cc--------cCEEEEEEcCCCC--
Q 001403 840 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFSDALN-- 891 (1084)
Q Consensus 840 ~l~~s~~d~~~la~g~~d----------------g~i~iwd~~~~~~~~~l~~--h~--------~~V~~l~~spd~~-- 891 (1084)
.+++.+ ....++.+..+ +.|..+|..+|+.+..++. |. .++. +...++|+
T Consensus 239 ~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~ 316 (571)
T 2ad6_A 239 WYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMT 316 (571)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEE
T ss_pred eEEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEE
Confidence 356777 44566666532 3699999999998877653 21 2222 23335774
Q ss_pred -EEEEEeCCCcEEEEeCCCCceeeeeeeec-C---------CCCc-------------------cCC--CCceEEEEccC
Q 001403 892 -ILVSSGGDAQIFVWDVDGWGIQTCRSLQT-P---------DGVM-------------------TLA--PSETHIQFHKD 939 (1084)
Q Consensus 892 -~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-~---------~~~~-------------------~~~--~~v~~~~~s~d 939 (1084)
.++.++.+|.+.++|..+|+..-...+.. . .+.. ... ..-..++++|+
T Consensus 317 ~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 396 (571)
T 2ad6_A 317 PLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE 396 (571)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC
Confidence 67788899999999999987544322111 0 0000 000 00135788998
Q ss_pred CCEEEEE-e-------------------------------------CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccC
Q 001403 940 QTRFLLV-H-------------------------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCD 981 (1084)
Q Consensus 940 g~~la~~-~-------------------------------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~d 981 (1084)
..++.+. . ++.|..||..+|+.+.+...+ ..+.+..+...
T Consensus 397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~ 474 (571)
T 2ad6_A 397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTK 474 (571)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEET
T ss_pred CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC--CCccceeEEEC
Confidence 8877763 2 367999999999988775432 22333333445
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeEEecc
Q 001403 982 CRMVFTSFVDGTLSIHEASNLEVQCRILS 1010 (1084)
Q Consensus 982 g~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1010 (1084)
+..+++++.||.|+.||..+|+.+.++..
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 66788899999999999999999988773
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.9e-06 Score=87.11 Aligned_cols=217 Identities=9% Similarity=-0.023 Sum_probs=143.5
Q ss_pred ceeEEEEcCCC--CCeEEEEEcCCCCcEEEEEeC--CCeEEEEEcCCceeeeeecccc-cCEEEEEEcCCCCEE-EEEeC
Q 001403 825 FKTILTIMPPS--PTATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNIL-VSSGG 898 (1084)
Q Consensus 825 ~~~~~~~~~~~--~~i~~l~~s~~d~~~la~g~~--dg~i~iwd~~~~~~~~~l~~h~-~~V~~l~~spd~~~l-~s~s~ 898 (1084)
.+.+.++. |. .....++|++ ++.++++.+. ++.|+++|+.+++.+..+.-.. .....+++. ++.| ++.-.
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 34556664 33 3468999999 6755555443 5799999999999888764211 122345554 4444 44456
Q ss_pred CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCC----CCCE
Q 001403 899 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPIS----SVPI 973 (1084)
Q Consensus 899 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h----~~~v 973 (1084)
++.+.++|..+.+.... +....+ . ...+++||+.+.++ .++.|.++|..+.+.+..+.-+. -..+
T Consensus 85 ~~~v~viD~~t~~v~~~--i~~g~~-~-------g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKN--FTHQMK-D-------GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp CSEEEEEETTTTEEEEE--EECCSS-S-------CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred CCEEEEEECCCCcEEEE--EECCCC-C-------eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 78999999998664442 221111 1 23466788877775 56789999999988877765432 1246
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCC---CCcccceeeeEEEECCCCCCEEEEEeCCCcEEEE
Q 001403 974 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP---TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1050 (1084)
Q Consensus 974 ~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw 1050 (1084)
..+.|. ||+..+....++.|.+-|..+++.+.++......+. ........+..++|+|+....++++...+.|++.
T Consensus 155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 155 NELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 788888 776555555678999999999999988874321100 0011123456799999644577778888999999
Q ss_pred cCCCCC
Q 001403 1051 EPNEPG 1056 (1084)
Q Consensus 1051 ~~~~~~ 1056 (1084)
++.+..
T Consensus 234 ~l~~~~ 239 (266)
T 2iwa_A 234 KLHLVR 239 (266)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 986643
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.71 E-value=0.0021 Score=78.69 Aligned_cols=573 Identities=11% Similarity=0.047 Sum_probs=299.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC
Q 001403 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 467 (1084)
Q Consensus 388 ~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g 467 (1084)
...|.++.-..+|.+ -.|..+| +..||-..-+..... -......|.++.-..+|. |-.|+.+| +..+|..++
T Consensus 21 ~n~V~~I~qD~~G~l-WigT~~G-L~ryDG~~~~~~~~~--~~~~~~~i~~i~~d~~g~---lWigT~~G-l~~yd~~~~ 92 (758)
T 3ott_A 21 ASVVSCFLQDSEGLI-WIGSNKG-LFSYDGYSTQQHFTY--GENNNTRIYCGVIIDNTY---LYMGTDNG-ILVYNYRAD 92 (758)
T ss_dssp CCCEEEEEECTTSCE-EEEESSC-EEEECSSCEEECSCT--TSTTSSCEEEEEEETTTE---EEEEETTE-EEEEETTTT
T ss_pred cceEEEEEECCCCCE-EEEECCC-ccccCCCceEEEEcc--CCCCCceEEEEEEcCCCc---EEEEeCCC-eEEEeCCCC
Confidence 467999998888854 4556777 667773221111100 011234688888877765 44444444 889998876
Q ss_pred ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEe----ecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 468 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 468 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
+...........|.++.. . ++ .|..++.+ -+..+|..+...... .......|.++....+|...+.. .
T Consensus 93 ~f~~~~~~~~~~i~~i~~--~-~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~-- 164 (758)
T 3ott_A 93 RYEQPETDFPTDVRTMAL--Q-GD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGT-Y-- 164 (758)
T ss_dssp EECCCSCCCCSCEEEEEE--E-TT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEE-T--
T ss_pred EEECcccCCCceEEEEEe--c-CC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEe-C--
Confidence 543211112334666643 2 33 45555655 567788765443221 01223468888888888876643 2
Q ss_pred CCCeeEEEecCCCceEeeeeeccc--cccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEE
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQ--LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 621 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 621 (1084)
. -+..++..+++......... .....|.++...+++..|..|+. +-+..+|..+++......... ..|.++.
T Consensus 165 --~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~--~~i~~i~ 238 (758)
T 3ott_A 165 --N-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHN--NSIKSLA 238 (758)
T ss_dssp --T-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEE--EEEEEEE
T ss_pred --C-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCC--CeEEEEE
Confidence 2 27888887765432211110 01234788888777776666664 468889988776533221111 1367777
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCCeeeecc-------ccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccc
Q 001403 622 FNKNGTLLAVIANENRIKILETPESNSVDAAG-------VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 694 (1084)
Q Consensus 622 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 694 (1084)
...+|.+.+ |+. +-+.+++..+........ .....|.++..... |...+
T Consensus 239 ~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~----------------------g~lWi 294 (758)
T 3ott_A 239 LDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQE----------------------HNIWL 294 (758)
T ss_dssp ECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTT----------------------CCEEE
T ss_pred EcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCC----------------------CCEEE
Confidence 777776555 444 457788876553221111 11223444444322 22221
Q ss_pred eecccCccccccceeecCccceee-ccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCe
Q 001403 695 SVEAENKSEVEKPLFARPSECQSL-LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 773 (1084)
Q Consensus 695 ~~~~d~~i~~w~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 773 (1084)
|...| +.+.... ........ ..........|.++....+|...+. +.+| +..++-..+.. ..+.
T Consensus 295 -GT~~G-l~~~~~~--~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~---------~~~~ 359 (758)
T 3ott_A 295 -GTDYG-ISLSRYN--SALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGER---------HDAI 359 (758)
T ss_dssp -EESSS-EEEECCC--C-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSC---------CCCE
T ss_pred -EeCCc-ccccccC--CceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeeccccccc---------ceeE
Confidence 11122 2111110 00000000 0001112346888888888875544 4455 33333221100 0011
Q ss_pred eecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEE--cC----CCCCeEEEEEcCCC
Q 001403 774 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI--MP----PSPTATSLAFNPHD 847 (1084)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~--~~----~~~~i~~l~~s~~d 847 (1084)
.+...... ..-....|.++.-.++|...+.. ++.+..+|..+++...-. .. ....|.++...+ +
T Consensus 360 ~~~~~~~~--------~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~ 429 (758)
T 3ott_A 360 WYRMGDKT--------YPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-A 429 (758)
T ss_dssp EECTTCSS--------SCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-T
T ss_pred EeccCCcC--------CCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-C
Confidence 11110000 00123568888888888766654 668999999877654321 11 124578888877 5
Q ss_pred CcEEEEEeCCCeEEEEEcCCc------eee--eeec---c-cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 001403 848 NNVIAIGMDDSTILIYNARSS------EVI--SKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 915 (1084)
Q Consensus 848 ~~~la~g~~dg~i~iwd~~~~------~~~--~~l~---~-h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~ 915 (1084)
+.+ -.|+..+-|.++|..+. ... ..+. + ....|.++...++|.+.+.++..+-|..+|..+++....
T Consensus 430 g~l-WigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~ 508 (758)
T 3ott_A 430 GQL-WISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKL 508 (758)
T ss_dssp SEE-EEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEE
T ss_pred CCE-EEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEe
Confidence 654 44776666888886531 111 1111 1 123589999999988776444445588899887653321
Q ss_pred eeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecC-CCCCEEEEEEccCCCEEEEEeCCCcE
Q 001403 916 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTL 994 (1084)
Q Consensus 916 ~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~dg~i 994 (1084)
.. .... ....+.++....+|.+-+.+. +-+..++..+++...-...+ ....|.++... +|. |..++.+| +
T Consensus 509 ---~~-~~~~-~~~~~~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~-lWi~t~~G-l 579 (758)
T 3ott_A 509 ---FA-DELT-GEKSPNYLLCDEDGLLWVGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNS-IWVSTTNG-L 579 (758)
T ss_dssp ---CT-TTSC-GGGCEEEEEECTTSCEEEEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTE-EEEEESSC-E
T ss_pred ---cC-CCcC-CCcccceEEECCCCCEEEEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CCC-EEEECCCC-e
Confidence 11 1100 012577888888998876654 56888887765432210111 13568888764 664 55555666 7
Q ss_pred EEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 995 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 995 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
..+|..+.+... +. ++.. .+. ...+... ...|..|+.+|- ..+++..
T Consensus 580 ~~~~~~~~~~~~-~~----~~~~----~~~--~~~~~~~-~G~l~fG~~~Gl-~~f~p~~ 626 (758)
T 3ott_A 580 WIIDRKTMDARQ-QN----MTNK----RFT--SLLFDPK-EDCVYLGGADGF-GISHSNL 626 (758)
T ss_dssp EEEETTTCCEEE-C------CCC----CCS--EEEEETT-TTEEEEECBSEE-EEEEC--
T ss_pred EEEcCCCceeEE-ec----CCCC----cee--eeEEECC-CCcEEEecCCce-EEEChhh
Confidence 778988776542 11 1111 122 1223322 357778888875 4556543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.6e-05 Score=93.04 Aligned_cols=376 Identities=12% Similarity=0.035 Sum_probs=201.7
Q ss_pred EEEEEeC-CCcEEEEEC-CCCceeeEeccCCC-c---------E-EEEeecccCCCcEEEEEecCCeEEEEECCCCCceE
Q 001403 449 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGA-P---------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 515 (1084)
Q Consensus 449 ~l~s~~~-d~~i~vwd~-~~g~~~~~~~~h~~-~---------v-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 515 (1084)
.++.++. ++.|.-+|. ++|+.+-++..... . + ..+++ .+..++.++.|+.+..+|..+++.+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 3555666 788999999 89998866643221 0 0 11222 23578888899999999999998877
Q ss_pred eecCCCC----eEEE-EEEcCCCCEEEEEeeCC--CCCeeEEEecCCCceEeeeeeccccc-------------------
Q 001403 516 DYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ------------------- 569 (1084)
Q Consensus 516 ~~~~~~~----~i~~-~~~s~d~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~------------------- 569 (1084)
....... .+.+ ... .++ .+++++... ..++.|+.+|..+|+.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6544321 1111 111 134 455544211 01567999999999998776543200
Q ss_pred ---------------cC-ceEEEEEcCCCCEEEEEECC----------------CcEEEEECCCCeEEEEEcCCCCC---
Q 001403 570 ---------------HN-SVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGL--- 614 (1084)
Q Consensus 570 ---------------~~-~v~~~~~s~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~--- 614 (1084)
.. ....+++.++...++.+..+ +.|..+|..+|+.+..++...+.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00 00235667777777776642 35999999999999888653211
Q ss_pred -CCcce---EEEecCCC---EEEEEECCCeEEEEEcCCCCeeeeccccc--cceeEEEEcCCCceeeeeccCceeEecCC
Q 001403 615 -PENPR---ICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLS--DNLRKLSVNPISTVTGAGIANGSVSVNED 685 (1084)
Q Consensus 615 -~~v~~---v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~~~~~p~~~~~~~~~~~~~~~~~~~ 685 (1084)
..+.. +....+|+ .++.++.+|.+.++|..+++.+....... .....+..
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~--------------------- 356 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDL--------------------- 356 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT---------------------
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccc---------------------
Confidence 01111 22224674 57778889999999999998776544221 01110000
Q ss_pred CCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcc
Q 001403 686 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 765 (1084)
Q Consensus 686 ~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~ 765 (1084)
..+..+..... .. .+........|.......-..++++|+...+++...+....++..+..
T Consensus 357 --~~g~p~~~~~~---------~~-~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~------- 417 (571)
T 2ad6_A 357 --KTGTPVRDPEF---------AT-RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP------- 417 (571)
T ss_dssp --TTCSEEECGGG---------CC-CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC-------
T ss_pred --cCCceeccccc---------CC-CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc-------
Confidence 00000000000 00 000000111111001111135688999888888877644444322110
Q ss_pred cceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcC
Q 001403 766 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNP 845 (1084)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 845 (1084)
| ..+. . .-.....+..+|.+. ....+|.+..||+.+++.+.++.... .+....+..
T Consensus 418 ---------~--~~g~-~---------~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t 473 (571)
T 2ad6_A 418 ---------Y--RAGQ-F---------FVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT 473 (571)
T ss_dssp ---------C--CTTS-C---------CCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE
T ss_pred ---------c--ccCC-c---------cccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEE
Confidence 0 0000 0 000001122233221 00124789999999999887765322 222222233
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCceeeeeecccccC-EEEEEEcCCCCEEEE
Q 001403 846 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS 895 (1084)
Q Consensus 846 ~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~spd~~~l~s 895 (1084)
.+.++++++.||.|+.||..+|+.+.++...... -.-+.+..+|+.++.
T Consensus 474 -~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 474 -KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp -TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred -CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 3456777999999999999999999887643221 112345567765553
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=3.6e-05 Score=90.21 Aligned_cols=150 Identities=13% Similarity=0.102 Sum_probs=97.0
Q ss_pred CeEEEEEcCCceeeeeecc--cc--------cCEEEEEEc-CCCC---EEEEEeCCCcEEEEeCCCCceeeeeeeec-C-
Q 001403 858 STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DALN---ILVSSGGDAQIFVWDVDGWGIQTCRSLQT-P- 921 (1084)
Q Consensus 858 g~i~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-pd~~---~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-~- 921 (1084)
+.|.-+|..+|+.+..++. |. .++. +... .+|+ .++.++.+|.++++|..+|+..-...+.. .
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 6899999999999877643 32 1221 2222 4674 78889999999999999988653222111 0
Q ss_pred --------CCC--------c-----------------cCC--CCceEEEEccCCCEEEE-Ee------------------
Q 001403 922 --------DGV--------M-----------------TLA--PSETHIQFHKDQTRFLL-VH------------------ 947 (1084)
Q Consensus 922 --------~~~--------~-----------------~~~--~~v~~~~~s~dg~~la~-~~------------------ 947 (1084)
.+. . ... ..-..++++|+..++.+ ..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 000 0 000 00124677887665554 21
Q ss_pred ---------------CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEecc
Q 001403 948 ---------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1010 (1084)
Q Consensus 948 ---------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1010 (1084)
++.|.-||+.+|+.+.+...+. ++..-.....|.++++++.||.++.||.++|+.+.++..
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 4679999999999887654322 222222233466888899999999999999999988873
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-05 Score=93.19 Aligned_cols=378 Identities=12% Similarity=0.067 Sum_probs=201.2
Q ss_pred EEEEeCCCcEEEEECCCCceeeEeccCCCcE---------EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCC
Q 001403 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPV---------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP 520 (1084)
Q Consensus 450 l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v---------~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 520 (1084)
++.++.++.|.-+|.++|+.+-++....... ..+++ .+..++.++.|+.|..+|..+++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4445543448889999999887665432210 11222 2347888899999999999999987765443
Q ss_pred CC----eEE-EEEEcC---CCC-EEEEEeeCC--CCCeeEEEecCCCceEeeeeeccccc--------------------
Q 001403 521 GL----GCT-RMAYSA---NGR-RLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ-------------------- 569 (1084)
Q Consensus 521 ~~----~i~-~~~~s~---d~~-~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~-------------------- 569 (1084)
.. .+. ...+.. +|+ .+++++... ..++.|+.+|..+|+.+-........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111111 244 455543211 12577999999999988765432100
Q ss_pred ------------------cCceEEEEEcCCCCEEEEEEC--------------------C----CcEEEEECCCCeEEEE
Q 001403 570 ------------------HNSVSVVHFDTAKDQILAAGD--------------------D----HVIKIWDMNKVQLLTT 607 (1084)
Q Consensus 570 ------------------~~~v~~~~~s~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~ 607 (1084)
...-..+++.|+...++.+.. | +.|..+|..+|+.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 000123566777788887663 2 5899999999999988
Q ss_pred EcCCCCC----CCcc-eEEEe---cCCC---EEEEEECCCeEEEEEcCCCCeeeecccccc--ceeEEEEcCCCceeeee
Q 001403 608 IDAGGGL----PENP-RICFN---KNGT---LLAVIANENRIKILETPESNSVDAAGVLSD--NLRKLSVNPISTVTGAG 674 (1084)
Q Consensus 608 ~~~~~~~----~~v~-~v~~s---~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~~p~~~~~~~~ 674 (1084)
++...+. ..+. -+.+. .+|+ .++.++.+|.++++|..+++.+........ ....+ .+.
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~--~~~------- 377 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHI--DLK------- 377 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEE--CTT-------
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccc--ccc-------
Confidence 8643221 0011 12222 4674 788889999999999999988766543221 11111 000
Q ss_pred ccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEee
Q 001403 675 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 754 (1084)
Q Consensus 675 ~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~ 754 (1084)
.+.........+.. +. . .+ +........|.......-..++++|+...+++...+-...++.
T Consensus 378 --~g~p~~~~~~~~~~--~~-~-~~------------~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~ 439 (582)
T 1flg_A 378 --TGRPVEREGQRPPL--PE-P-GQ------------KHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWT 439 (582)
T ss_dssp --TCCEEECTTCSCCC--CC-T-TC------------SSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEE
T ss_pred --CCCEeEccccCCcc--cc-c-cc------------cCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeec
Confidence 00000000000000 00 0 00 0000011111111111123568888887777776553333322
Q ss_pred ccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCC
Q 001403 755 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP 834 (1084)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~ 834 (1084)
.+. . ...| ....-..+...|++. ..+|.|..||+.+++.+.+....
T Consensus 440 ~~~----------------~--~~~g------------~~~~g~~~~~~p~~~----~~~G~l~A~D~~tG~~~W~~~~~ 485 (582)
T 1flg_A 440 EEV----------------S--YTKG------------SAYLGMGFRIKRMYD----DHVGSLRAMDPVSGKVVWEHKEH 485 (582)
T ss_dssp CCC----------------C--CCTT------------SCCCCEEEEEEESCS----SCSEEEEEECTTTCCEEEEEEES
T ss_pred ccc----------------c--ccCC------------CceeccceeecCCCC----CCcceEEEEECCCCCEEEEecCC
Confidence 110 0 0001 111111122223210 12588999999999988766533
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCE-EEEEEcCCCCEEE
Q 001403 835 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNILV 894 (1084)
Q Consensus 835 ~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V-~~l~~spd~~~l~ 894 (1084)
.. +..-.+.. .+.++++|+.||.++.||.++|+.+.+++...+.+ .-+.+..||+..+
T Consensus 486 ~~-~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 486 LP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp SC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CC-CcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 22 11111222 34577889999999999999999998887543321 1256667776444
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.6e-05 Score=91.09 Aligned_cols=380 Identities=10% Similarity=0.049 Sum_probs=199.9
Q ss_pred EEEEEeC-CCcEEEEEC-CCCceeeEeccCCCc-----------EEEEeecccCC--CcEEEEEecCCeEEEEECCCCCc
Q 001403 449 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-----------VYSLCPHAKEN--IHFIFSISVDGKIKAWLYDSLGA 513 (1084)
Q Consensus 449 ~l~s~~~-d~~i~vwd~-~~g~~~~~~~~h~~~-----------v~~~~~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~ 513 (1084)
.++.++. ++.|.-+|. ++|+.+-++...... ...+++.+..+ ...++.++.|+.+..+|..+++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 3556666 788999999 899988666432210 11223321111 12378888999999999999988
Q ss_pred eEeecCCCC----eEEE-EEEcCCCCEEEEEeeCC--CCCeeEEEecCCCceEeeeeeccccc-----------------
Q 001403 514 RVDYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ----------------- 569 (1084)
Q Consensus 514 ~~~~~~~~~----~i~~-~~~s~d~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~----------------- 569 (1084)
+........ .+.+ ..+ .++ .+++++... ..++.|+.+|..+|+.+-.+......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 776544321 1111 111 144 444443211 02578999999999998776543200
Q ss_pred -----------------cCce-EEEEEcCCCCEEEEEECC----------------CcEEEEECCCCeEEEEEcCCCCCC
Q 001403 570 -----------------HNSV-SVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGLP 615 (1084)
Q Consensus 570 -----------------~~~v-~~~~~s~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~ 615 (1084)
...+ ...++.++...++.+..+ +.|..+|..+|+.+..++...+..
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 0000 134566777888887765 379999999999998887543210
Q ss_pred ----Ccce-EEEe---cCC---CEEEEEECCCeEEEEEcCCCCeeeecccccc--ceeEEEEcCCCceeeeeccCceeEe
Q 001403 616 ----ENPR-ICFN---KNG---TLLAVIANENRIKILETPESNSVDAAGVLSD--NLRKLSVNPISTVTGAGIANGSVSV 682 (1084)
Q Consensus 616 ----~v~~-v~~s---~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~~p~~~~~~~~~~~~~~~~ 682 (1084)
.... +.+. .+| ..++.++.+|.+.++|..+++.+........ ....+.. ..+....
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~-----------~~g~p~~ 370 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL-----------KTGQPVR 370 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT-----------TTCCEEE
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc-----------CCCceee
Confidence 0111 2222 467 5677788999999999999988765432110 0000000 0000000
Q ss_pred cCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCc
Q 001403 683 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTL 762 (1084)
Q Consensus 683 ~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~ 762 (1084)
.....+ .+.....+..|.......-..++++|+...+++...+....++.....
T Consensus 371 ~~~~~~----------------------~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~---- 424 (599)
T 1w6s_A 371 DPEYGT----------------------RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLP---- 424 (599)
T ss_dssp CGGGCC----------------------CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC----
T ss_pred ccccCC----------------------CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccc----
Confidence 000000 000011111121111122235789999888887776633322110000
Q ss_pred CcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEE
Q 001403 763 STEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLA 842 (1084)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 842 (1084)
...+. . .-..-..+..+|.+........|.+..||+.+++.+............ .
T Consensus 425 --------------~~~g~-~---------~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g-~ 479 (599)
T 1w6s_A 425 --------------YKAGQ-F---------FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGG-T 479 (599)
T ss_dssp --------------CCTTS-C---------CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSB-C
T ss_pred --------------ccCCc-c---------eecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCc-c
Confidence 00000 0 000000011112110000002477899999999888776422111111 1
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCE-EEEEEcCCCCEE
Q 001403 843 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNIL 893 (1084)
Q Consensus 843 ~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V-~~l~~spd~~~l 893 (1084)
+.. .+.++++++.||.++.||..+|+.+.+++-..+.+ .-+.+..||+..
T Consensus 480 ~~t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 480 MAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY 530 (599)
T ss_dssp EEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred eEe-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEE
Confidence 222 34577779999999999999999998876433211 224555677643
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.58 E-value=4.8e-06 Score=84.07 Aligned_cols=186 Identities=12% Similarity=0.097 Sum_probs=126.6
Q ss_pred CccEEEecCCCCEEEEEe-CC--eEEEEEcCCceeEEEEcCCCCC-eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee
Q 001403 796 AVPCFALSKNDAYLFSAS-GG--VISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 871 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~s-dg--~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~ 871 (1084)
-...+.|+ ++.++.+++ +| .|+++|+++++.+..+...... .-.+++. ++++.+..-.++.+.+||..+.+.+
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEE
Confidence 34788898 666555555 44 7999999999999888654322 2334543 3455555556899999999999999
Q ss_pred eeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCe
Q 001403 872 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 950 (1084)
Q Consensus 872 ~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~ 950 (1084)
.++.... ....+++|++.|+.+..++.|.++|..+.+......+.. .+... ..+..+.|. +|+..|.. .++.
T Consensus 121 ~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~--~~lNELe~~-~G~lyan~w~~~~ 193 (262)
T 3nol_A 121 RSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEEL--PELNELEWV-DGEIFANVWQTNK 193 (262)
T ss_dssp EEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccc--cccceeEEE-CCEEEEEEccCCe
Confidence 8887422 223444678877776667889999999876554333321 11110 134457776 77665554 6789
Q ss_pred EEEEEcCCcceeeEeecCC-----------CCCEEEEEEccCCCEEEEEeCC
Q 001403 951 LAIYEAEELTCLKQWFPIS-----------SVPISQATFSCDCRMVFTSFVD 991 (1084)
Q Consensus 951 i~vwd~~~~~~~~~~~~~h-----------~~~v~~l~fs~dg~~l~t~~~d 991 (1084)
|.+.|..+|+.+..+...- ..-...|+|+|+++.|++++..
T Consensus 194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 9999999999887754321 2355789999998888877653
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.56 E-value=7.4e-06 Score=99.92 Aligned_cols=253 Identities=10% Similarity=-0.002 Sum_probs=138.0
Q ss_pred CceEEEEc-CCCceeeeecccccCccccccceEEEEEcCCc-cccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC----
Q 001403 336 SPMSMDFH-PVQHTLLLGLWDVNSGQKLFIRNFKVWDIGAC-SMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---- 409 (1084)
Q Consensus 336 ~V~~v~~s-pdg~~las~~~d~~sg~~~~~~~v~iwd~~~~-~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d---- 409 (1084)
.+...+|| |||++||..... .|.. ..+|+++|+.++ ..... . +. .....++|||||+.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~--~G~~--~~~l~v~dl~~g~~~l~~-~-~~---~~~~~~~WspDg~~l~y~~~d~~~~ 245 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDM--SGNE--VYTIEFKRISDPSQTIAD-K-VS---GTNGEIVWGPDHTSLFYVTKDETLR 245 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEES--SSSS--CEEEEEEETTCTTCCCCC-C-EE---EECSCCEECSSTTEEEEEEECTTCC
T ss_pred EEeeeEecCCCCCEEEEEEeC--CCCc--eEEEEEEECCCCCEeCCc-c-cc---CceeeEEEecCCCEEEEEEECCCCC
Confidence 67889999 999999986543 2221 156999999987 52211 1 11 123468999999999888765
Q ss_pred -CEEEEEEccCCccccceeeee-cccccEeEEEeecCCCcEEEEEEe-CCCcEEEEECCCCc-ee--eEe-ccCCCcEEE
Q 001403 410 -HIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGS-RT--YSF-EGHGAPVYS 482 (1084)
Q Consensus 410 -g~v~iwd~~~~~~~~~~~~l~-~h~~~V~~l~~s~d~~~l~l~s~~-~d~~i~vwd~~~g~-~~--~~~-~~h~~~v~~ 482 (1084)
..|.++++.+++..... .+. .+......+.|||||+.+++.+.. ....|.++|+.++. .. ..+ ........+
T Consensus 246 ~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s 324 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD 324 (751)
T ss_dssp EEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred CCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence 35888888876432111 222 223346688999999963333322 24468889988762 22 333 334445555
Q ss_pred EeecccCCCcEEEEEecC--C--eEEEEECCCCCceEe-ecCCCC--eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecC-
Q 001403 483 LCPHAKENIHFIFSISVD--G--KIKAWLYDSLGARVD-YDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLVEWNE- 554 (1084)
Q Consensus 483 ~~~~~~~~~~~l~s~s~d--g--~i~iwd~~~~~~~~~-~~~~~~--~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~- 554 (1084)
+.|+ .++.+++....+ + .|..+++.+...... +..+.. .+..+.+ ++..|+.... .++...|.++++
T Consensus 325 ~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~-~~g~~~l~~~dl~ 399 (751)
T 2xe4_A 325 VQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGR-RAGLTRIWTMMAD 399 (751)
T ss_dssp EEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEE-ETTEEEEEEEECC
T ss_pred Eeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEE-eCCEEEEEEEecc
Confidence 5442 133344444443 2 566667654222112 222222 4445554 4566665543 234667888886
Q ss_pred ------CCceEeeeeeccccccCceEEEEE----cCCCCEE-EEEECC---CcEEEEECCCCeEE
Q 001403 555 ------SEGAIKRTYQGLQLQHNSVSVVHF----DTAKDQI-LAAGDD---HVIKIWDMNKVQLL 605 (1084)
Q Consensus 555 ------~~~~~~~~~~~~~~~~~~v~~~~~----s~~~~~l-~~~~~d---g~i~iwd~~~~~~~ 605 (1084)
.+++....+.... ...+..+.+ ++++..+ ++.+.. ..++.+|+.+++..
T Consensus 400 ~~~~~~~~g~~~~~l~l~~--~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~ 462 (751)
T 2xe4_A 400 SQDGVFKAGTGLREVVMEE--PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT 462 (751)
T ss_dssp TTTSCCCTTTCCEECCCCC--SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred cccccccCCccceEECCCC--ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 4444123332111 012333322 3455544 443322 46778888777643
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.6e-06 Score=84.12 Aligned_cols=183 Identities=7% Similarity=0.053 Sum_probs=124.2
Q ss_pred CccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCe--EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee
Q 001403 796 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 872 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~ 872 (1084)
-...+.|+. +.++.+.+ +|.|+++|+++++.+..+ -. ... -.+++. ++++.+....++.+.+||..+.+.+.
T Consensus 56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEE
Confidence 346788873 44444444 688999999999998887 22 233 335554 45566666678999999999999998
Q ss_pred eecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeE
Q 001403 873 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL 951 (1084)
Q Consensus 873 ~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i 951 (1084)
++..- ..-. .+++|++.|+.+..++.|.++|..+.+......+....... ..+..+.|. +|+..|.. ..+.|
T Consensus 131 ti~~~-~eGw--GLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v---~~lNeLe~~-dG~lyanvw~s~~I 203 (268)
T 3nok_A 131 TTRYS-GEGW--GLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV---ELINELECA-NGVIYANIWHSSDV 203 (268)
T ss_dssp EEECS-SCCC--CEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTCSEE
T ss_pred EEeCC-Ccee--EEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc---ccccccEEe-CCEEEEEECCCCeE
Confidence 88742 2223 33467888887777899999999987755533332211111 134567776 77655554 57799
Q ss_pred EEEEcCCcceeeEeecC------------CCCCEEEEEEccCCCEEEEEeC
Q 001403 952 AIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFV 990 (1084)
Q Consensus 952 ~vwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t~~~ 990 (1084)
.+.|..+|+.+..+..+ -..-...|+++|+++.|++++.
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 99999999988775432 1235688999998766666553
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.52 E-value=7.2e-06 Score=82.81 Aligned_cols=185 Identities=13% Similarity=0.066 Sum_probs=128.3
Q ss_pred EeEEEeecCCCcEEEEEEeCCC--cEEEEECCCCceeeEeccCCCcE-EEEeecccCCCcEEEEEecCCeEEEEECCCCC
Q 001403 436 VNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG 512 (1084)
Q Consensus 436 V~~l~~s~d~~~l~l~s~~~d~--~i~vwd~~~g~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 512 (1084)
...+.|+ ++. +..+.+.+| .|+++|+++|+.+.++.-..... ..+++ .++ .+.+..-.++.+.+||.++.+
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~-~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKD-KIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETT-EEEEEESSSSEEEEEETTTCC
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCC-EEEEEEeeCCEEEEEECccCc
Confidence 4778898 664 666776665 89999999999998886433221 22444 322 444555568899999999999
Q ss_pred ceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccc--cccCceEEEEEcCCCCEEEEEEC
Q 001403 513 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ--LQHNSVSVVHFDTAKDQILAAGD 590 (1084)
Q Consensus 513 ~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~ 590 (1084)
....+..... ...+++|++.|+... +.+.|.++|..+.+.+..+.... .....++.+.|. +|...+..-.
T Consensus 119 ~~~ti~~~~e---G~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~ 190 (262)
T 3nol_A 119 QVRSFNYDGE---GWGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ 190 (262)
T ss_dssp EEEEEECSSC---CCCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred EEEEEECCCC---ceEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence 8887765442 234447788877763 35679999999999888876532 011234557776 6654444446
Q ss_pred CCcEEEEECCCCeEEEEEcCCCC----------CCCcceEEEecCCCEEEEEEC
Q 001403 591 DHVIKIWDMNKVQLLTTIDAGGG----------LPENPRICFNKNGTLLAVIAN 634 (1084)
Q Consensus 591 dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~v~~s~~~~~l~~~~~ 634 (1084)
++.|.+.|..+|+.+..+...+- ....+.+||+|+++.|.+.+.
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 88999999999999999876421 123478999998887777765
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=7.1e-05 Score=81.14 Aligned_cols=239 Identities=11% Similarity=0.054 Sum_probs=145.9
Q ss_pred CccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEE-cC------------------CCCCeEEEEEcCCCCcEEEEEe
Q 001403 796 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI-MP------------------PSPTATSLAFNPHDNNVIAIGM 855 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~-~~------------------~~~~i~~l~~s~~d~~~la~g~ 855 (1084)
...+++++++|.++.++. ++.|..|+..+++...-. .. ....+..+++.+++++ |.++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence 456789999998666655 688999998765433211 10 0135788999973454 55555
Q ss_pred CCCeEEEEEcCCceeeeeec----c-cccCEEEEEEcC-CCCEEEEEeC-----------------CCcEEEEeCCCCce
Q 001403 856 DDSTILIYNARSSEVISKLE----G-HSKRVTGLVFSD-ALNILVSSGG-----------------DAQIFVWDVDGWGI 912 (1084)
Q Consensus 856 ~dg~i~iwd~~~~~~~~~l~----~-h~~~V~~l~~sp-d~~~l~s~s~-----------------dg~I~iwd~~~~~~ 912 (1084)
..+.|..+|..+++. ..+. + .......+++.+ +|++.++... ++.|..||..+++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 556688899876643 2221 1 123478899999 9987776533 36788888876553
Q ss_pred eeeeeeecCCCCccCCCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcc--eeeEeecCCCCCEEEEEEccCCCEEEEE
Q 001403 913 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTS 988 (1084)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~ 988 (1084)
.. ...... ....++++|||++|.++ ..+.|.+|++.... ....+.. ..+ ...+++.++|.+.++.
T Consensus 178 ~~--~~~~~~-------~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~ 246 (322)
T 2fp8_A 178 TL--LLKELH-------VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSS 246 (322)
T ss_dssp EE--EEEEES-------CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEE
T ss_pred EE--eccCCc-------cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEe
Confidence 22 111111 34579999999977664 45789999987421 1111111 123 7889999999877766
Q ss_pred eC----------CCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 989 FV----------DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 989 ~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
.. .+.|..+|.. |+.+..+....-.. . -.+.++++. ++.+.++....+.|.++++....
T Consensus 247 ~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~----~--~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 247 SEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFA----G--EHFEQIQEH--DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTT----T--SCCCEEEEE--TTEEEEECSSCSEEEEEEC----
T ss_pred cCcccccccCCCccEEEEECCC-CCEEEEEECCCCCc----c--ccceEEEEe--CCEEEEeecCCCceEEEeccccc
Confidence 44 4668888864 77666655221100 0 112234454 46666666678899999885443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.45 E-value=7.2e-05 Score=80.35 Aligned_cols=229 Identities=13% Similarity=0.106 Sum_probs=139.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC-CC-cEEEEECCC
Q 001403 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DK-TIKVWDAVT 466 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-d~-~i~vwd~~~ 466 (1084)
.....++|+++|+++++-..++.|..||..++. .. .+ ........++++++|+ ++++... ++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~--~~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QI--HA-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EE--EE-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EE--EE-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 456789999999977776688899999987642 11 11 2234688999999998 4554433 32 477778788
Q ss_pred CceeeEecc-CCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEe-e-------c--CCCCeEEEEEEcCCCCE
Q 001403 467 GSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-Y-------D--APGLGCTRMAYSANGRR 535 (1084)
Q Consensus 467 g~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~-------~--~~~~~i~~~~~s~d~~~ 535 (1084)
|+....... .......++.. .++..+++...++.|..+|......... . . ..-.....+ ++|++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~--~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEES--SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCccccc--CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 875432221 12223444432 2334455544688888888765321111 0 0 111233445 889988
Q ss_pred EEEEeeCCCCCeeEEEecCCC-ceE--eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCC
Q 001403 536 LFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 612 (1084)
Q Consensus 536 l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 612 (1084)
|+.+.. ..+.|..+++.. ++. ...+... .....++++++|+.+++....+.|.+++.. ++.........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~ 252 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ 252 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES----CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc----CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence 877653 356799999864 332 1111111 235668899999887777778899999975 65533222222
Q ss_pred CCCCcceEEEe---cCCCEEEEEECCC
Q 001403 613 GLPENPRICFN---KNGTLLAVIANEN 636 (1084)
Q Consensus 613 ~~~~v~~v~~s---~~~~~l~~~~~dg 636 (1084)
......+++|. |+++.|++++..+
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ccCCceEEEEecccCCCCEEEEECCCC
Confidence 22346889998 8888877776543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.44 E-value=9.4e-06 Score=97.61 Aligned_cols=288 Identities=9% Similarity=0.011 Sum_probs=162.0
Q ss_pred EEEEcC-CCceeeeecccccC-c-cccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeC-CCEEEE
Q 001403 339 SMDFHP-VQHTLLLGLWDVNS-G-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KHIVQL 414 (1084)
Q Consensus 339 ~v~~sp-dg~~las~~~d~~s-g-~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~-dg~v~i 414 (1084)
++++.| +|+.++.|.++... + .......+.+||..+........+...+.....++++.++|+.+++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 667788 99999998766321 1 1111246899999876654333322334444556888999999999984 457999
Q ss_pred EEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEe-CC-----CcEEEEECCCCceeeEe----ccCCCcEEEEe
Q 001403 415 YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DD-----KTIKVWDAVTGSRTYSF----EGHGAPVYSLC 484 (1084)
Q Consensus 415 wd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~-~d-----~~i~vwd~~~g~~~~~~----~~h~~~v~~~~ 484 (1084)
||..+++-... ..+.... .-.+++..++|+ +++.|+ .+ ..+.+||..+++-...- ......-....
T Consensus 270 yd~~t~~W~~~-~~~~~~R-~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~ 345 (656)
T 1k3i_A 270 YDSSSDSWIPG-PDMQVAR-GYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGL 345 (656)
T ss_dssp EEGGGTEEEEC-CCCSSCC-SSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGG
T ss_pred ecCcCCceeEC-CCCCccc-cccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccce
Confidence 99987643211 1111111 112455667888 777777 34 57999999887643220 00000000001
Q ss_pred ecccCCCcEEEEEecCC---------eEEEEECCCCCceEeecCC---------CCeEEEEEEc-CCCCEEEEEeeCCC-
Q 001403 485 PHAKENIHFIFSISVDG---------KIKAWLYDSLGARVDYDAP---------GLGCTRMAYS-ANGRRLFSCGTSKE- 544 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~dg---------~i~iwd~~~~~~~~~~~~~---------~~~i~~~~~s-~d~~~l~~~~~~~~- 544 (1084)
+ ..++..++.++.+| .+..||..+..-....... ...-.++.|. .+++.++.++.+..
T Consensus 346 ~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~ 423 (656)
T 1k3i_A 346 Y--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ 423 (656)
T ss_dssp G--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred e--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence 1 12334455555443 4677887765532221111 1112344443 36777777764221
Q ss_pred ---CCe---eEEEecCCCceEeeee--eccccccCceEEEEEcCCCCEEEEEECC-----------CcEEEEECCCCeEE
Q 001403 545 ---GES---FLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDD-----------HVIKIWDMNKVQLL 605 (1084)
Q Consensus 545 ---~~~---~i~~wd~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~ 605 (1084)
... .+.+||..+....... .... ...-.+++..|+++.++.|+.+ ..+.+||..+.+..
T Consensus 424 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~--~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~ 501 (656)
T 1k3i_A 424 DSDATTNAHIITLGEPGTSPNTVFASNGLYF--ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY 501 (656)
T ss_dssp SSBCCCCEEEEECCSTTSCCEEEECTTCCSS--CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred CCCcCCcceEEEcCCCCCCCeeEEccCCCCC--CcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee
Confidence 011 6889998877654433 1111 1123345667899999998754 56899999887655
Q ss_pred EEEcCCCCCCCcceEEEecCCCEEEEEEC
Q 001403 606 TTIDAGGGLPENPRICFNKNGTLLAVIAN 634 (1084)
Q Consensus 606 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 634 (1084)
..-..........+..+.|+|+.++.|+.
T Consensus 502 ~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 502 KQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp ECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 43222211112234556789999999885
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.43 E-value=5e-05 Score=76.05 Aligned_cols=187 Identities=10% Similarity=0.042 Sum_probs=126.2
Q ss_pred CCCccEEEecCCCCEEEEEe-C--CeEEEEEcCCceeEEEEcCCCC-CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce
Q 001403 794 QEAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 869 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~s-d--g~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~ 869 (1084)
..-...+.|++ +.++.+.+ . +.|+.+|+.+++.+..+.-... .--.+++. ++++....-.++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 34456889986 45444444 3 4899999999999988764432 22344554 45566666678999999999999
Q ss_pred eeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eC
Q 001403 870 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 948 (1084)
Q Consensus 870 ~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d 948 (1084)
.+.++.... .- ..+++|++.|..+..++.|.++|..+.+......+.. .+... ..+..+.+. +|+..|.. ..
T Consensus 97 ~~~ti~~~~-~G--wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~--~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 97 PRARFRYPG-EG--WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPL--DNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp EEEEEECSS-CC--CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTT
T ss_pred EEEEEeCCC-Cc--eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCccc--ccceeeEEe-CCEEEEEECCC
Confidence 998887432 22 3344677777777778899999999876544333322 11110 134556655 67665554 57
Q ss_pred CeEEEEEcCCcceeeEeecC------------CCCCEEEEEEccCCCEEEEEeC
Q 001403 949 THLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFV 990 (1084)
Q Consensus 949 ~~i~vwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t~~~ 990 (1084)
+.|.+.|..+|+.+..+..+ -..-...|+++|+++.|++++.
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 79999999999988775432 1235678999998877777664
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=4.4e-05 Score=82.76 Aligned_cols=240 Identities=10% Similarity=-0.011 Sum_probs=145.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeee-----------------ecccccEeEEEeec-CCCcEEE
Q 001403 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI-----------------DAHVGNVNDLAFSA-PCKQISV 450 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l-----------------~~h~~~V~~l~~s~-d~~~l~l 450 (1084)
....+++|+++|+++.++..++.|..||..+++. ...... ......+..+++.+ ++. |
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~---l 94 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ---L 94 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE---E
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCc---E
Confidence 3456689999999888888889999999876542 111000 01123578899998 665 4
Q ss_pred EEEeCCCcEEEEECCCCceeeEecc-----CCCcEEEEeecccC-CCcEEEEEec-----------------CCeEEEEE
Q 001403 451 ITCGDDKTIKVWDAVTGSRTYSFEG-----HGAPVYSLCPHAKE-NIHFIFSISV-----------------DGKIKAWL 507 (1084)
Q Consensus 451 ~s~~~d~~i~vwd~~~g~~~~~~~~-----h~~~v~~~~~~~~~-~~~~l~s~s~-----------------dg~i~iwd 507 (1084)
+.+...+.|..+|..++.. ..+.. .......+++ ++ +|.+.++... +|.|..||
T Consensus 95 ~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~--d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTV--DQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEE--CTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEE--ecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 4444445588899776543 22211 1124567777 44 5566665432 36688887
Q ss_pred CCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCce--EeeeeeccccccCceEEEEEcCCCCEE
Q 001403 508 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQI 585 (1084)
Q Consensus 508 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l 585 (1084)
.++........ .......++++++|+.|+.+.. ..+.|..+++.... ....+.... + ...+++.++|+..
T Consensus 172 ~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~---~~~~I~~~~~~~~~~~~~~~~~~~~---g-P~gi~~d~~G~l~ 243 (322)
T 2fp8_A 172 PSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEF---LSHQIVKYWLEGPKKGTAEVLVKIP---N-PGNIKRNADGHFW 243 (322)
T ss_dssp TTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEG---GGTEEEEEESSSTTTTCEEEEEECS---S-EEEEEECTTSCEE
T ss_pred CCCCEEEEecc-CCccCcceEECCCCCEEEEEeC---CCCeEEEEECCCCcCCccceEEeCC---C-CCCeEECCCCCEE
Confidence 76544322111 1123356899999997776643 24569999887421 111222122 3 6788999999877
Q ss_pred EEEEC----------CCcEEEEECCCCeEEEEEcCCCC--CCCcceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 586 LAAGD----------DHVIKIWDMNKVQLLTTIDAGGG--LPENPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 586 ~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
++... .+.|..+|. .++.+..+..... ...+..+++ .+++++++....+.|..+++..
T Consensus 244 va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 244 VSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 66544 467888887 4777777765432 234566666 4565555555678899888763
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.9e-05 Score=78.30 Aligned_cols=185 Identities=9% Similarity=0.088 Sum_probs=126.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
.-...+.|+ ++.++.+.+.+|.|+++|+++++.++.. +.. ........++++.++ +..-.++.+.++|.++.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~Ly-~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGERLY-QLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSCEE-EEESSSCEEEEEETTTTE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCEEE-EEEccCCEEEEEECCcCc
Confidence 445778887 4667777788889999999999887754 332 233322334555534 445568999999999999
Q ss_pred eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCC--C---eEEEEEEcCCCCEEEEEeeCC
Q 001403 469 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--L---GCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 469 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~---~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
.+.++...... ..++. ++..|+.+..++.|.++|..+.+....+.... . .+..+.|. +|+ |++...
T Consensus 128 ~~~ti~~~~eG-wGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw-- 198 (268)
T 3nok_A 128 RERTTRYSGEG-WGLCY----WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIW-- 198 (268)
T ss_dssp EEEEEECSSCC-CCEEE----ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET--
T ss_pred EEEEEeCCCce-eEEec----CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEEC--
Confidence 99988753222 34443 45677777778999999999888766654422 1 34566766 775 444332
Q ss_pred CCCeeEEEecCCCceEeeeeeccc----------cccCceEEEEEcCCCCEEEEEEC
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGD 590 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~l~~~~~ 590 (1084)
....|.+.|..+|+.+..+.... ......+.++++|+++.|++.+.
T Consensus 199 -~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 -HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp -TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred -CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 25579999999999988876431 01246789999998877777664
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.41 E-value=9.4e-05 Score=79.40 Aligned_cols=231 Identities=12% Similarity=0.084 Sum_probs=138.2
Q ss_pred CCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCC-C-eEEEEEcCCceee
Q 001403 795 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-S-TILIYNARSSEVI 871 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d-g-~i~iwd~~~~~~~ 871 (1084)
.....++++++|+++++-. ++.|..||.... ....+. .......+++++ +++++++.... + .|..++..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 4567899999998666653 688999998753 333332 335688999999 77766655432 2 5777787777653
Q ss_pred eeec-ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeee---ee--cCCCCccCCCCceEEEEccCCCEEEE
Q 001403 872 SKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ--TPDGVMTLAPSETHIQFHKDQTRFLL 945 (1084)
Q Consensus 872 ~~l~-~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~--~~~~~~~~~~~v~~~~~s~dg~~la~ 945 (1084)
.... ........++..+++..+++-..++.|.++|..++....... +. ...+.. .....+ ++|++.|.+
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~~pngi--s~dg~~lyv 183 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---PAANGL--KRFGNFLYV 183 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---CSEEEE--EEETTEEEE
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---CcCCCc--CcCCCEEEE
Confidence 2221 112233456666666556655568889899887642111000 00 001111 123444 899987777
Q ss_pred E--eCCeEEEEEcCC-cce--eeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcc
Q 001403 946 V--HETHLAIYEAEE-LTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1020 (1084)
Q Consensus 946 ~--~d~~i~vwd~~~-~~~--~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1020 (1084)
+ ..+.|..+++.. ++. ...+.. ......++++++|+++++....+.|.+++.. |+....... . .+
T Consensus 184 ~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~-~-~~----- 253 (306)
T 2p4o_A 184 SNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA-E-QG----- 253 (306)
T ss_dssp EETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG-G-GT-----
T ss_pred EeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec-c-cc-----
Confidence 5 467899999874 332 111111 1345678999999887777778899999975 655321110 0 11
Q ss_pred cceeeeEEEEC---CCCCCEEEEEeCCC
Q 001403 1021 LHVYPHAIAAH---PLKPTQFAVGLTNG 1045 (1084)
Q Consensus 1021 ~~v~~~~~~~~---p~d~~~l~~~~~dg 1045 (1084)
.-.+.+++|. | |+..|.+++..+
T Consensus 254 -~~~p~~~a~~g~~~-d~~~LyVt~~~~ 279 (306)
T 2p4o_A 254 -VIGSTAVAFGQTEG-DCTAIYVVTNGG 279 (306)
T ss_dssp -CTTEEEEEECCSTT-TTTEEEEEECTT
T ss_pred -cCCceEEEEecccC-CCCEEEEECCCC
Confidence 1236778898 6 566666665543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.35 E-value=8.7e-05 Score=74.34 Aligned_cols=188 Identities=13% Similarity=0.111 Sum_probs=125.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC--CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEEC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 464 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~d--g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~ 464 (1084)
...-...+.|++ +.++.+.+.+ ..|+++|+.+++.++.. .+.. .........+++. +.+..-.++.+.++|.
T Consensus 19 ~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~-~l~~---~~fgeGi~~~~~~-ly~ltw~~~~v~v~D~ 92 (243)
T 3mbr_X 19 TTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA-EVPP---PYFGAGIVAWRDR-LIQLTWRNHEGFVYDL 92 (243)
T ss_dssp TTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-ECCT---TCCEEEEEEETTE-EEEEESSSSEEEEEET
T ss_pred CccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-eCCC---CcceeEEEEeCCE-EEEEEeeCCEEEEEEC
Confidence 345677899987 5566666654 48999999999876643 2222 2222333334554 3444556899999999
Q ss_pred CCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCC-----CeEEEEEEcCCCCEEEEE
Q 001403 465 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-----LGCTRMAYSANGRRLFSC 539 (1084)
Q Consensus 465 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~s~d~~~l~~~ 539 (1084)
++.+.+.++...... ..++. ++..|+.+..++.|.++|..+.+....+.... ..+..+.+. +|+..+..
T Consensus 93 ~tl~~~~ti~~~~~G-wglt~----dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv 166 (243)
T 3mbr_X 93 ATLTPRARFRYPGEG-WALTS----DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV 166 (243)
T ss_dssp TTTEEEEEEECSSCC-CEEEE----CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred CcCcEEEEEeCCCCc-eEEee----CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence 999999998753332 34443 44556666668899999999888766654422 234455554 66544433
Q ss_pred eeCCCCCeeEEEecCCCceEeeeeeccc----------cccCceEEEEEcCCCCEEEEEEC
Q 001403 540 GTSKEGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGD 590 (1084)
Q Consensus 540 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~l~~~~~ 590 (1084)
-. ...|.+.|..+|+.+..+.... ......+.++++|+++.|++.+.
T Consensus 167 w~----s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 167 WL----TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TT----TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CC----CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 22 4569999999999988876432 11246789999999888888774
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.34 E-value=6.2e-05 Score=90.48 Aligned_cols=120 Identities=12% Similarity=0.181 Sum_probs=76.0
Q ss_pred EEEEcC-CCCEEEEEeeCCC-------CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEE
Q 001403 526 RMAYSA-NGRRLFSCGTSKE-------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKI 596 (1084)
Q Consensus 526 ~~~~s~-d~~~l~~~~~~~~-------~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i 596 (1084)
..++.+ +++.++.++.+.+ +...+.+||..+++..........+.....++++.++++.+++|+ .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456667 8888888775432 123689999988765332221110112334567788999999988 4568999
Q ss_pred EECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEE-CC-----CeEEEEEcCCC
Q 001403 597 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE-----NRIKILETPES 646 (1084)
Q Consensus 597 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~d-----g~i~iwd~~~~ 646 (1084)
||..+.+....-...... .-.+++..+++++++.|+ .+ ..+.+||..+.
T Consensus 270 yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 999988765543322221 123566667999999988 33 45777877655
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00099 Score=72.61 Aligned_cols=248 Identities=10% Similarity=-0.021 Sum_probs=150.4
Q ss_pred CCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE-eCCCEEE
Q 001403 335 SSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQ 413 (1084)
Q Consensus 335 ~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~-~~dg~v~ 413 (1084)
+...|.+..+++.++++. ...|+..++....... +.. ....+..++|++.+..|... ...+.|.
T Consensus 34 d~~~C~~~~~~~~ll~~~-----------~~~I~~i~~~g~~~~~---~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~ 98 (349)
T 3v64_C 34 DRRSCKALGPEPVLLFAN-----------RIDIRQVLPHRSEYTL---LLN-NLENAIALDFHHRRELVFWSDVTLDRIL 98 (349)
T ss_dssp TSSCEEESSSCCEEEEEC-----------BSCEEEECTTSCCEEE---EEC-SCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCcccccccCceeEeec-----------ccceEEEeCCCCeeEE---eec-CCCceEEEEEeccccEEEEEeccCCceE
Confidence 456677777755444442 1456666665432221 122 23458899999876666655 4567899
Q ss_pred EEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcE
Q 001403 414 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 493 (1084)
Q Consensus 414 iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~ 493 (1084)
.++++++.... .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....+++.|. ++.+
T Consensus 99 r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~-~g~l 173 (349)
T 3v64_C 99 RANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPM-EGTI 173 (349)
T ss_dssp EEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETT-TTEE
T ss_pred EEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecC-cCeE
Confidence 99998764221 12222234578999986664 4455556788999997654433333334456788888653 3445
Q ss_pred EEEEecC-CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCc
Q 001403 494 IFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 572 (1084)
Q Consensus 494 l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~ 572 (1084)
+++-... +.|...+++.................++++|++..|+.+-. +.+.|..+|+........+.... ..
T Consensus 174 y~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~~~~~---~~ 247 (349)
T 3v64_C 174 YWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQGL---PH 247 (349)
T ss_dssp EEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSSC---SS
T ss_pred EEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEEeCCC---CC
Confidence 5555555 78888888765444333333446789999998888887753 35679999876543332232222 45
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEc
Q 001403 573 VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 609 (1084)
Q Consensus 573 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 609 (1084)
...+++ ..+..+++-...+.|..++..+|+....+.
T Consensus 248 P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 248 PFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred ceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 667777 334444444566778888866666555554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=0.0013 Score=70.60 Aligned_cols=238 Identities=9% Similarity=-0.045 Sum_probs=143.6
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC---CceeeE-eccCC
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GSRTYS-FEGHG 477 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~---g~~~~~-~~~h~ 477 (1084)
+|+.+..+ .|+..|+.+.+... +-........++|++++.. ++++-...+.|..+++.+ +..... +...-
T Consensus 3 ~ll~~~~~-~I~~i~~~~~~~~~----~~~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNRH-EVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECBS-SEEEEETTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECCC-eEEEEECCCcceEe----hhcCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 34444443 48888988765332 2223446789999987764 455555678999999876 222222 32222
Q ss_pred CcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc
Q 001403 478 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~ 557 (1084)
.....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+.+... ..+.|...++..
T Consensus 77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG- 152 (316)
T 1ijq_A 77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNG- 152 (316)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTS-
T ss_pred CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCC-
Confidence 34567777432 34555666778899999987654443344344567899999987777665431 125688888753
Q ss_pred eEeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCC
Q 001403 558 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 636 (1084)
Q Consensus 558 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 636 (1084)
.....+.... ......+++++++..|+.+. ..+.|..+|+....................+++. .+..+++-...+
T Consensus 153 ~~~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~ 229 (316)
T 1ijq_A 153 VDIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (316)
T ss_dssp CCEEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred CCeEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence 3333332111 24678999999887777665 5678999998754333332222222234577775 355555555678
Q ss_pred eEEEEEcCCCCeeeec
Q 001403 637 RIKILETPESNSVDAA 652 (1084)
Q Consensus 637 ~i~iwd~~~~~~~~~~ 652 (1084)
.|..++..+++....+
T Consensus 230 ~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 230 AIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEEETTTCCCCEEE
T ss_pred eEEEEeCCCCcceEEE
Confidence 8999988777555444
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00095 Score=72.76 Aligned_cols=249 Identities=10% Similarity=-0.042 Sum_probs=152.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
+..+|.+..+++ +|+.+.. ..|+..++.+.... .+......+..++|++.+.. ++++-...+.|..+++..+.
T Consensus 34 d~~~C~~~~~~~-~ll~~~~-~~I~~i~~~g~~~~----~~~~~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFANR-IDIRQVLPHRSEYT----LLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp TSSCEEESSSCC-EEEEECB-SCEEEECTTSCCEE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCS
T ss_pred CCCcccccccCc-eeEeecc-cceEEEeCCCCeeE----EeecCCCceEEEEEeccccE-EEEEeccCCceEEEecCCCC
Confidence 344566666633 4444433 34777787765322 12223345789999987664 44555567889999987665
Q ss_pred eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCee
Q 001403 469 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 548 (1084)
Q Consensus 469 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 548 (1084)
....+.........+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+...... .+.
T Consensus 107 ~~~~~~~~~~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~--~~~ 183 (349)
T 3v64_C 107 VEEVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPR 183 (349)
T ss_dssp CEEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS--SCE
T ss_pred ceEEEeCCCCCccEEEEecC-CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC--CCE
Confidence 43333322334466777432 345566666778999999886554444444445678999999877777664311 267
Q ss_pred EEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC
Q 001403 549 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 627 (1084)
Q Consensus 549 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 627 (1084)
|...++............ ......++++|++..|+.+. ..+.|..+|+........+... ......+++. ++.
T Consensus 184 I~r~~~dG~~~~~~~~~~---~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav~-~~~ 257 (349)
T 3v64_C 184 IEASSMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITVF-EDS 257 (349)
T ss_dssp EEEEETTSCSCEESCCSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEEE-TTE
T ss_pred EEEEeCCCCCcEEEEECC---CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEEE-CCE
Confidence 888887643322222211 24578999998877777654 5678999998754433333322 2234677773 455
Q ss_pred EEEEEECCCeEEEEEcCCCCeeeecc
Q 001403 628 LLAVIANENRIKILETPESNSVDAAG 653 (1084)
Q Consensus 628 ~l~~~~~dg~i~iwd~~~~~~~~~~~ 653 (1084)
.+++-...+.|..++..+++....+.
T Consensus 258 ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 258 LYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEecCCCCeEEEEEccCCCccEEec
Confidence 55555567888888866665555443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.0012 Score=71.41 Aligned_cols=235 Identities=9% Similarity=0.031 Sum_probs=131.9
Q ss_pred CCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEc---CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee
Q 001403 794 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 870 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~ 870 (1084)
...+.++++++ +..++++..+.|.. ..+.|+.-.... .....+..+++.+ ++.+++++. +|.|.. ..+.|+.
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~-~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMITN-VGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEET-TCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEeC-CccEEE-EcCCCCC
Confidence 44678889986 55566666664433 333343333322 2334577888877 676766554 554432 1222322
Q ss_pred ee-eecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCC
Q 001403 871 IS-KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 949 (1084)
Q Consensus 871 ~~-~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~ 949 (1084)
-. ...++...+..+++.|++.+++.+...+..+-+|-.... ...+... . ...+..+++++++..++++.++
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~t---W~~~~~~--~---~~~~~~~~~~~~g~~~~~~~~G 225 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTA---WEPHNRT--T---SRRLHNMGFTPDGRLWMIVNGG 225 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSS---CEEEECC--S---SSCEEEEEECTTSCEEEEETTT
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCc---eeECCCC--C---CCccceeEECCCCCEEEEeCCc
Confidence 11 122455678999999998888766443333334421111 1112111 1 1257889999999988888888
Q ss_pred eEEEEEcCCcceeeEeecC---CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeee
Q 001403 950 HLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1026 (1084)
Q Consensus 950 ~i~vwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1026 (1084)
.+++.+...|+.-.....+ +...+.++++.+++..++++ .+|.| .+..+.|+--..+......+ ..++
T Consensus 226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~-----~~~~-- 296 (327)
T 2xbg_A 226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVP-----SNFY-- 296 (327)
T ss_dssp EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSS-----SCCC--
T ss_pred eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCC-----CCeE--
Confidence 8887753334433222211 23468899999988877765 57777 45556564332222111111 1244
Q ss_pred EEEECCCCCCEEEEEeCCCcEEEEcC
Q 001403 1027 AIAAHPLKPTQFAVGLTNGEVYVIEP 1052 (1084)
Q Consensus 1027 ~~~~~p~d~~~l~~~~~dg~v~vw~~ 1052 (1084)
++.|.+ +..+++++.+|.|.-++-
T Consensus 297 ~v~~~~--~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 297 KILFFS--PDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEEEE--TTEEEEECSTTEEEEECC
T ss_pred EEEEEC--CCceEEEcCCceEEEEcC
Confidence 355553 456888889998777653
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00022 Score=80.23 Aligned_cols=247 Identities=12% Similarity=0.034 Sum_probs=143.6
Q ss_pred CCccEEEecC-CCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeC-CC----eEEEEEcCC
Q 001403 795 EAVPCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-DS----TILIYNARS 867 (1084)
Q Consensus 795 ~~v~~l~~s~-dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~-dg----~i~iwd~~~ 867 (1084)
.....++++| ++..|.++. .+.|+.+|+.+++...... .......++|++ ++++|+++.. ++ .+.+++. .
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~ 213 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-E 213 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-C
Confidence 3567899998 455666665 4789999998766544433 556688999999 7875555554 22 3444443 3
Q ss_pred ceee--eeecccccCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEE
Q 001403 868 SEVI--SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 944 (1084)
Q Consensus 868 ~~~~--~~l~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 944 (1084)
+... ..+. .......++++| +|.++++-..++.|..++..++.... ....... .....++|+|+|++|.
T Consensus 214 g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~ly 285 (430)
T 3tc9_A 214 SGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAY 285 (430)
T ss_dssp GTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEE
T ss_pred Cceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEE
Confidence 3222 2222 123456789999 77777776678899999998754321 1111111 1467899999999666
Q ss_pred EE--eCCeEEEEEcCC--cce--eeEeec--C---C---------CCCEE-EEEEc--------cCCCEEEEEeCCCcEE
Q 001403 945 LV--HETHLAIYEAEE--LTC--LKQWFP--I---S---------SVPIS-QATFS--------CDCRMVFTSFVDGTLS 995 (1084)
Q Consensus 945 ~~--~d~~i~vwd~~~--~~~--~~~~~~--~---h---------~~~v~-~l~fs--------~dg~~l~t~~~dg~i~ 995 (1084)
++ ..+.|..++... ++. +..+.. + . -.... .++.. ++|.++++-...+.|+
T Consensus 286 v~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~ 365 (430)
T 3tc9_A 286 IVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR 365 (430)
T ss_dssp EEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred EEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEE
Confidence 64 567898887652 221 111111 0 0 01122 45553 3466666656678899
Q ss_pred EEEcCCCceeEEecccc--ccC--CC-C--cccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCC
Q 001403 996 IHEASNLEVQCRILSTA--YLR--PT-T--SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1053 (1084)
Q Consensus 996 vwd~~~~~~~~~~~~~~--~~~--~~-~--~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~ 1053 (1084)
.++ .+|.+........ ... .+ . ...--.|..++++|+++.++++-...+.|+.+++.
T Consensus 366 ~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 366 ILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 988 4565543332100 000 00 0 00112578899998545555555556778887764
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00065 Score=75.27 Aligned_cols=247 Identities=11% Similarity=-0.035 Sum_probs=151.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001403 391 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 470 (1084)
Q Consensus 391 V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~ 470 (1084)
-.|.+..++ .+|+.+.. ..|+..++.++.... +.........++|.+.+.. ++++-...+.|..+++..+...
T Consensus 79 ~~C~~~~~~-~~l~~~~~-~~I~~i~~~~~~~~~----~~~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~ 151 (386)
T 3v65_B 79 RSCKALGPE-PVLLFANR-IDIRQVLPHRSEYTL----LLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVE 151 (386)
T ss_dssp SCEEECSSC-CEEEEECB-SCEEEECTTSCCCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEE
T ss_pred CeECCcccc-ceeEeecC-ccceeeccCCCcEEE----EecCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcE
Confidence 345555553 34444443 458888887654322 2223345789999987664 4555556788999998766543
Q ss_pred eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEE
Q 001403 471 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 550 (1084)
Q Consensus 471 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 550 (1084)
..+.........+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+..... ..+.|.
T Consensus 152 ~~~~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~--~~~~I~ 228 (386)
T 3v65_B 152 EVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIE 228 (386)
T ss_dssp EEECSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS--SSCEEE
T ss_pred EEEeCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC--CCCEEE
Confidence 333322233456676432 34555666667889888887655444444444567899999988877766431 136788
Q ss_pred EecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEE
Q 001403 551 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 629 (1084)
Q Consensus 551 ~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 629 (1084)
.+++............- .....++++|++..|+.+. ..+.|..+|+........+... ......+++ .++.++
T Consensus 229 r~~~dG~~~~~~~~~~~---~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly 302 (386)
T 3v65_B 229 ASSMDGSGRRIIADTHL---FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLY 302 (386)
T ss_dssp EEETTSCSCEEEECSSC---SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEE
T ss_pred EEeCCCCCcEEEEECCC---CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEE
Confidence 88876443322222222 4578999998877776654 5678999998754443333322 223467777 345555
Q ss_pred EEEECCCeEEEEEcCCCCeeeecc
Q 001403 630 AVIANENRIKILETPESNSVDAAG 653 (1084)
Q Consensus 630 ~~~~~dg~i~iwd~~~~~~~~~~~ 653 (1084)
++-...+.|..++..+++....+.
T Consensus 303 ~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 303 WTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEE
T ss_pred EeeCCCCeEEEEECCCCcceEEEc
Confidence 565567888888876776555554
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00013 Score=88.88 Aligned_cols=200 Identities=7% Similarity=-0.027 Sum_probs=114.5
Q ss_pred CCCC-CeEEEEEc-CCCCEEEEEeC-C----CEEEEEEccCC-ccccceeeeecccccEeEEEeecCCCcEEEEEEeCC-
Q 001403 386 DPGV-SVNRVVWS-PDGSLLGVAYS-K----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD- 456 (1084)
Q Consensus 386 ~h~~-~V~~v~fs-pdg~~las~~~-d----g~v~iwd~~~~-~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d- 456 (1084)
+|.- .+...+|| |||++||.+.. + .+|+++|+.++ +.+.. .+. .....++|+|||+. |+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~---~~~~~~~WspDg~~--l~y~~~d~ 242 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVS---GTNGEIVWGPDHTS--LFYVTKDE 242 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEE---EECSCCEECSSTTE--EEEEEECT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--ccc---CceeeEEEecCCCE--EEEEEECC
Confidence 4443 68889999 99999997643 2 35999999998 63321 121 12457899999985 4433333
Q ss_pred ----CcEEEEECCCCcee--eEec-cCCCcEEEEeecccCCCcEEEEEecC---CeEEEEECCCCCc-e--Eee-cCCCC
Q 001403 457 ----KTIKVWDAVTGSRT--YSFE-GHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGA-R--VDY-DAPGL 522 (1084)
Q Consensus 457 ----~~i~vwd~~~g~~~--~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~-~--~~~-~~~~~ 522 (1084)
..|.++++.++... ..+. ........+.| ++||++|+..+.+ ..|.++|+++... . ..+ .....
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK--AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE--CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE--CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 36888898877532 2222 22334556677 5577777765533 3578888876531 2 222 22333
Q ss_pred eEEEEEEcCCCCEEEEEeeCC-CCCeeEEEecCCCc-eEee-eeeccccccCceEEEEEcCCCCEE-EEEECCCc--EEE
Q 001403 523 GCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEG-AIKR-TYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHV--IKI 596 (1084)
Q Consensus 523 ~i~~~~~s~d~~~l~~~~~~~-~~~~~i~~wd~~~~-~~~~-~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~--i~i 596 (1084)
...++.|+ +|+.|+..+... .+...|..+|+.++ +... .+.... ...+..+.+. ++.| ++...++. |++
T Consensus 321 ~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~--~~~l~~~~~~--~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 321 VRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSE--DVFMESIAVR--SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp CCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCS--SEEEEEEEEC--SSEEEEEEEETTEEEEEE
T ss_pred ceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCC--CcEEEEEEEE--CCEEEEEEEeCCEEEEEE
Confidence 44444443 366666665432 34667888888753 3222 222211 1234555554 4454 45666775 445
Q ss_pred EEC
Q 001403 597 WDM 599 (1084)
Q Consensus 597 wd~ 599 (1084)
+++
T Consensus 396 ~dl 398 (751)
T 2xe4_A 396 MMA 398 (751)
T ss_dssp EEC
T ss_pred Eec
Confidence 564
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00094 Score=74.00 Aligned_cols=247 Identities=10% Similarity=-0.030 Sum_probs=151.0
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE-eCCCEEEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQL 414 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~-~~dg~v~i 414 (1084)
.-.|.+..+++.++++. ...|+..++........ .. ....+..++|++.+..|... ...+.|..
T Consensus 78 ~~~C~~~~~~~~l~~~~-----------~~~I~~i~~~~~~~~~~---~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r 142 (386)
T 3v65_B 78 RRSCKALGPEPVLLFAN-----------RIDIRQVLPHRSEYTLL---LN-NLENAIALDFHHRRELVFWSDVTLDRILR 142 (386)
T ss_dssp SSCEEECSSCCEEEEEC-----------BSCEEEECTTSCCCEEE---EC-SCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCeECCccccceeEeec-----------CccceeeccCCCcEEEE---ec-CCCccEEEEEecCCCeEEEEeCCCCcEEE
Confidence 44566666655444442 15567777665432211 22 33568899999866666555 45678999
Q ss_pred EEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEE
Q 001403 415 YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI 494 (1084)
Q Consensus 415 wd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l 494 (1084)
++++++.... .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....+++.+. ++.++
T Consensus 143 ~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~-~g~ly 217 (386)
T 3v65_B 143 ANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPM-EGTIY 217 (386)
T ss_dssp EETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETT-TTEEE
T ss_pred EecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcC-CCeEE
Confidence 9988764211 12222234567899986664 4455555778999887654433333333456788888653 33444
Q ss_pred EEEecC-CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCce
Q 001403 495 FSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 573 (1084)
Q Consensus 495 ~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v 573 (1084)
++-... +.|...+++.................++++|++..|+.+-. +.+.|..+|+........+.... ...
T Consensus 218 ~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~---~~P 291 (386)
T 3v65_B 218 WTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQGL---PHP 291 (386)
T ss_dssp EEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECSSC---SSE
T ss_pred EeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEECCC---CCc
Confidence 554444 78888888765544444444456789999998888887753 35679999986543332332222 456
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEc
Q 001403 574 SVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 609 (1084)
Q Consensus 574 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 609 (1084)
..+++ ..+..+++-...+.|..++..+|+....+.
T Consensus 292 ~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 292 FAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 77777 344455555567888888877776666654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00088 Score=68.21 Aligned_cols=218 Identities=14% Similarity=0.144 Sum_probs=133.9
Q ss_pred EEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc-cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001403 830 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 908 (1084)
Q Consensus 830 ~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~-h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~ 908 (1084)
.+.+-...+..++++|+++.++++...++.|...|.. ++.+..+.- -....-.+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4555667899999999556677778889999999998 887777631 12457889999999877776677889999987
Q ss_pred CCce-eeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeC-CeEEEEEcC---CcceeeEee------cCCCCCEEEEE
Q 001403 909 GWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE-THLAIYEAE---ELTCLKQWF------PISSVPISQAT 977 (1084)
Q Consensus 909 ~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d-~~i~vwd~~---~~~~~~~~~------~~h~~~v~~l~ 977 (1084)
.... ..........+..........++++|++..|.++.+ ....||.+. ....+.... ..+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 6442 111122211111112235789999999977777533 333444443 111111110 11244678999
Q ss_pred EccC-CCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcC
Q 001403 978 FSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1052 (1084)
Q Consensus 978 fs~d-g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~ 1052 (1084)
|.|. |++++.......+.++|.. |+.+..+....-.. +.....-.+--|+|+| +|++.++ +..+.++++..
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~-~l~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSR-GLSHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGG-GCSSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccC-CcccccCCCCeeEECC-CCCEEEE-cCCceEEEEEe
Confidence 9984 5667777777889999977 55655554221000 0001123456789999 5775555 66665555543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00027 Score=79.53 Aligned_cols=248 Identities=11% Similarity=0.022 Sum_probs=145.3
Q ss_pred CccEEEecCC--CCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCC---C-eEEEEEcCCc
Q 001403 796 AVPCFALSKN--DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---S-TILIYNARSS 868 (1084)
Q Consensus 796 ~v~~l~~s~d--g~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d---g-~i~iwd~~~~ 868 (1084)
....++++|+ +..|..+. .+.|+.+|..+++.... .........+++++ +++++++-... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4668999984 44455554 48899999987766544 33556689999999 77754444321 1 2333333222
Q ss_pred eee-eeecccccCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE
Q 001403 869 EVI-SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 946 (1084)
Q Consensus 869 ~~~-~~l~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 946 (1084)
... ..+. .-.....+++.| +|.+.++-..++.|+.+|..++..... ....... .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~-~~~~~~~-----~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE-EVMMDTK-----GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE-EEECSCC-----SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE-EeccCCC-----CCcccEEEeCCCCEEEEE
Confidence 110 1111 223456688999 777776666778899999987654111 1111111 123479999999966664
Q ss_pred --eCCeEEEEEcC--Cccee--eEeec--C------------CCCCEEEEEE---------ccCCCEEEEEeCCCcEEEE
Q 001403 947 --HETHLAIYEAE--ELTCL--KQWFP--I------------SSVPISQATF---------SCDCRMVFTSFVDGTLSIH 997 (1084)
Q Consensus 947 --~d~~i~vwd~~--~~~~~--~~~~~--~------------h~~~v~~l~f---------s~dg~~l~t~~~dg~i~vw 997 (1084)
..+.|+.++.. ++... ..+.. + .-.....++| .++|.++++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 45789998765 33211 11111 0 0123567999 7778777777777889999
Q ss_pred EcCCCceeEEeccccccCCCC-c------ccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCC
Q 001403 998 EASNLEVQCRILSTAYLRPTT-S------CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1053 (1084)
Q Consensus 998 d~~~~~~~~~~~~~~~~~~~~-~------~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~ 1053 (1084)
+. +|.+............+. . ..--+|..++++|.+|.++++=...+.|+.+++.
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 85 565443322111000000 0 0113477899995456666666667788888764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0021 Score=71.47 Aligned_cols=240 Identities=10% Similarity=-0.027 Sum_probs=149.3
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC----ceeeEeccCC
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 477 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g----~~~~~~~~h~ 477 (1084)
+|+.+. ...|+..++.+.... .+......+..++|++.+.. ++++-...+.|..+++... .....+....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~----~~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEec-cceeEEEccCCccee----EeccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 444443 456888888875432 22334556889999987664 4445555788999998652 2223333334
Q ss_pred CcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc
Q 001403 478 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~ 557 (1084)
.....+++.+. ++.+.++-...+.|.+.+++.......+.........+++.|.+..|+..... ....|...++...
T Consensus 159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~--~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS--SSCCEEEEETTSC
T ss_pred CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC--CCCEEEEEeCCCC
Confidence 55677887543 34566666677899999888665555554445567899999987777765421 1356888887644
Q ss_pred eEeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCC
Q 001403 558 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 636 (1084)
Q Consensus 558 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 636 (1084)
.........- .....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus 236 ~~~~~~~~~l---~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~ 311 (400)
T 3p5b_L 236 DIYSLVTENI---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 311 (400)
T ss_dssp SCEEEECSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred ccEEEEECCC---CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence 3332222222 4678999999888887765 5678999998765444444332223334566663 344555555668
Q ss_pred eEEEEEcCCCCeeeeccc
Q 001403 637 RIKILETPESNSVDAAGV 654 (1084)
Q Consensus 637 ~i~iwd~~~~~~~~~~~~ 654 (1084)
.|..++..+++.+..+..
T Consensus 312 ~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 312 AIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp SEEEEESSSCCCCEEEEC
T ss_pred eEEEEEcCCCCceEEEec
Confidence 888888777766655543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0037 Score=67.39 Aligned_cols=280 Identities=10% Similarity=0.020 Sum_probs=148.6
Q ss_pred CCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeee--cCCCCCeEEEEEcCCCCEEEEEeCCCEE
Q 001403 335 SSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV--RDPGVSVNRVVWSPDGSLLGVAYSKHIV 412 (1084)
Q Consensus 335 ~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~--~~h~~~V~~v~fspdg~~las~~~dg~v 412 (1084)
..+.+|.|.+++..+|+|. + +.| |....+....+.... ......+.++.|++ +..++ ++..+.|
T Consensus 36 ~~~~~v~~~~~~~~~~~G~-~---------g~i--~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i 101 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLVGV-N---------ATL--METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIM 101 (327)
T ss_dssp SCEEEEEESSSSCEEEEET-T---------TEE--EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEE
T ss_pred CcEEEEEECCCCcEEEEcC-C---------CeE--EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeE
Confidence 3789999998888888752 1 333 333332222221111 12345788999986 44444 4556644
Q ss_pred EEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceee-EeccCCCcEEEEeecccCCC
Q 001403 413 QLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPHAKENI 491 (1084)
Q Consensus 413 ~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~-~~~~h~~~v~~~~~~~~~~~ 491 (1084)
.. ..+.|+.-........+.+.+..+.+.+++. +++.+ .++.|.. ....|+.=. ....+...+..+.+.+ ++
T Consensus 102 ~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~--~~ 174 (327)
T 2xbg_A 102 LH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP--SG 174 (327)
T ss_dssp EE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT--TS
T ss_pred EE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC--CC
Confidence 32 4444554332211112345577888887776 45544 4565433 223343222 2234556788888854 55
Q ss_pred cEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecc-cccc
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL-QLQH 570 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-~~~~ 570 (1084)
.+++.+...+..+-+|-....-..........+..+++.++++.++.+. .+.+++.+...|+.-..+... ....
T Consensus 175 ~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~~~~~~~~~ 249 (327)
T 2xbg_A 175 EYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGELLSPLRRNS 249 (327)
T ss_dssp CEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCCBCTTSSCC
T ss_pred cEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEeccCCcccCC
Confidence 5665554433333333211111111223345788899999998776553 344666532324333322211 0011
Q ss_pred CceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC-CCCCCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 571 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 571 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
..+..+.+.+++..++++ .+|.| .+..+.|+.-..+... .....+..+.|.+++. +++++.+|.|.-++-
T Consensus 250 ~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 250 VGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp SCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred cceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 358889998877665554 46766 4555556555544422 1123478898986554 666667887776653
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0018 Score=69.58 Aligned_cols=206 Identities=8% Similarity=0.018 Sum_probs=129.9
Q ss_pred CCCccEEEecCCCCEEEEEe--CCeEEEEEcCC---ceeEE-EEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 001403 794 QEAVPCFALSKNDAYLFSAS--GGVISLYIVMT---FKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 867 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~---~~~~~-~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~ 867 (1084)
...+..++|++++..|..++ .+.|..+++.+ +.... .+...-.....+++.+.++++.++-...+.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34567899999877777766 58899999876 12222 23323345678999873555666666788999999875
Q ss_pred ceeeeeecccccCEEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE
Q 001403 868 SEVISKLEGHSKRVTGLVFSDALNILVSSGGD--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 945 (1084)
Q Consensus 868 ~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~d--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 945 (1084)
......+.........+++.|++..|..+... +.|...+++...... .... . . .....+++++++..|..
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~--~~~~--~-~---~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE--N-I---QWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EECS--S-C---SCEEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE--EEEC--C-C---CCceEEEEeccCCEEEE
Confidence 43332233234567899999976666555443 678888887533211 1111 1 1 14679999998887777
Q ss_pred E--eCCeEEEEEcCCcceeeEeecC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 946 V--HETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 946 ~--~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
+ ..+.|..+|+.. .....+... .......+++. .+..+++-...+.|..++..+|+....+.
T Consensus 181 ~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 181 VDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 5 456899999874 333333321 23446778874 45566666677889999988777655443
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.04 E-value=0.062 Score=65.60 Aligned_cols=566 Identities=10% Similarity=0.035 Sum_probs=285.4
Q ss_pred CCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEE
Q 001403 334 SSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 413 (1084)
Q Consensus 334 ~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~ 413 (1084)
...|.++.-..+|.+-+.. .+ | +..||-.+-.. +... .......|.++....+| .|-.|+.+| +.
T Consensus 21 ~n~V~~I~qD~~G~lWigT-~~---------G-L~ryDG~~~~~-~~~~-~~~~~~~i~~i~~d~~g-~lWigT~~G-l~ 85 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGS-NK---------G-LFSYDGYSTQQ-HFTY-GENNNTRIYCGVIIDNT-YLYMGTDNG-IL 85 (758)
T ss_dssp CCCEEEEEECTTSCEEEEE-SS---------C-EEEECSSCEEE-CSCT-TSTTSSCEEEEEEETTT-EEEEEETTE-EE
T ss_pred cceEEEEEECCCCCEEEEE-CC---------C-ccccCCCceEE-EEcc-CCCCCceEEEEEEcCCC-cEEEEeCCC-eE
Confidence 3478888888888654431 12 2 33444321110 0000 01123578888887776 455566666 88
Q ss_pred EEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEec-----cCCCcEEEEeeccc
Q 001403 414 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----GHGAPVYSLCPHAK 488 (1084)
Q Consensus 414 iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~-----~h~~~v~~~~~~~~ 488 (1084)
.||..+.+... ........|.++.. .+|. +..++.+ -+..+|..+++.. .+. .....|.++.. +
T Consensus 86 ~yd~~~~~f~~---~~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~--d 154 (758)
T 3ott_A 86 VYNYRADRYEQ---PETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIR--T 154 (758)
T ss_dssp EEETTTTEECC---CSCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEE--C
T ss_pred EEeCCCCEEEC---cccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEE--c
Confidence 99988754221 11112235777654 3554 3334444 6888998776543 231 12345777765 4
Q ss_pred CCCcEEEEEecCCeEEEEECCCCCceEe-ecC----CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeee
Q 001403 489 ENIHFIFSISVDGKIKAWLYDSLGARVD-YDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 563 (1084)
Q Consensus 489 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~----~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 563 (1084)
.++.+.+ ++.+| +..++......... ... ....|.++...+++..|..++. +-+..+|..+++.....
T Consensus 155 ~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-----~Gl~~~~~~~~~~~~~~ 227 (758)
T 3ott_A 155 KDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-----GYLFQYFPSTGQIKQTE 227 (758)
T ss_dssp TTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-----EEEEEEETTTTEEEEEE
T ss_pred CCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-----CCCeEEcCCCCeEEecc
Confidence 4554444 45444 66677655432211 111 1224788888887776555542 23888998877653322
Q ss_pred eccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCC-----CCCCcceEEEecCCCEEEEEECCCeE
Q 001403 564 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLAVIANENRI 638 (1084)
Q Consensus 564 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~~~~~dg~i 638 (1084)
... ...|.++....++...+ |+. +-+.+++..+++......... ....|.++....+|.+. +|+..| +
T Consensus 228 ~l~---~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-iGT~~G-l 300 (758)
T 3ott_A 228 AFH---NNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIW-LGTDYG-I 300 (758)
T ss_dssp EEE---EEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEE-EEESSS-E
T ss_pred CCC---CCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-EEeCCc-c
Confidence 111 24588888877776554 454 458889887765433221111 11236777777777644 455556 4
Q ss_pred EEEEcCCCCeeeecc-----ccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCc
Q 001403 639 KILETPESNSVDAAG-----VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS 713 (1084)
Q Consensus 639 ~iwd~~~~~~~~~~~-----~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~ 713 (1084)
.++.....-...... .....|.++.....+ .+.+. ..+| +..++.......
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g----------------------~lWiG-t~~G-l~~~~~~~~~~~ 356 (758)
T 3ott_A 301 SLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKG----------------------FYWFG-GANG-LIRFTDPAGERH 356 (758)
T ss_dssp EEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTC----------------------CEEEE-ETTE-EEEESCTTSSCC
T ss_pred cccccCCceeEEecccCCCCCCCceEEEEEEcCCC----------------------CEEEe-eCCc-ceeecccccccc
Confidence 444322111110000 011234444433222 22221 1222 222221110000
Q ss_pred cceeecc---CCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcC
Q 001403 714 ECQSLLL---PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 790 (1084)
Q Consensus 714 ~~~~~~~---~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1084)
....... +.......|.++....+|...+ ++ ++-+..|+...+.. ..+...... .
T Consensus 357 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~------------~~~~~~~~~--------~ 414 (758)
T 3ott_A 357 DAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQF------------IHYNIVDNT--------G 414 (758)
T ss_dssp CCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEE------------EEEEEECCC---------
T ss_pred eeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcE------------EEeecCCCc--------C
Confidence 0000000 0011234688888888887544 44 34566666433211 111100000 0
Q ss_pred CCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCc-----eeE---EEEc---C-CCCCeEEEEEcCCCCcEEEEEeCCC
Q 001403 791 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTF-----KTI---LTIM---P-PSPTATSLAFNPHDNNVIAIGMDDS 858 (1084)
Q Consensus 791 ~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~-----~~~---~~~~---~-~~~~i~~l~~s~~d~~~la~g~~dg 858 (1084)
......|.++...++|.+.+....+.+.++|..+. ... ..+. + ....|.++...+ ++.+.+.++..+
T Consensus 415 ~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~ 493 (758)
T 3ott_A 415 TYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNK 493 (758)
T ss_dssp -CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCS
T ss_pred CCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCC
Confidence 00234578888888887666555667888886531 111 1221 1 223588999988 777776444445
Q ss_pred eEEEEEcCCceeeeeecc---cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEE
Q 001403 859 TILIYNARSSEVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 935 (1084)
Q Consensus 859 ~i~iwd~~~~~~~~~l~~---h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 935 (1084)
-|..+|..+++....... ....+.++....+|.+.+. +..| +..++..++..... . ..+.. ...|.++.
T Consensus 494 Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~~---~-~~gl~--~~~i~~i~ 565 (758)
T 3ott_A 494 GIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQSI---S-FGSFS--NNEILSMT 565 (758)
T ss_dssp SEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCBC---C-CCC-----CCEEEEE
T ss_pred CcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEEe---c-ccCCC--ccceEEEE
Confidence 588899887764432211 1346888888888877764 4555 88888776543221 1 11111 13577777
Q ss_pred EccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEc-cCCCEEEEEeCCCcEEEEEcC
Q 001403 936 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 936 ~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~~dg~i~vwd~~ 1000 (1084)
.. +|.+.+++ ++-|..+|..+.+...--. ....+....+. +||. |+.|+.+|.+. ++..
T Consensus 566 ~~-~g~lWi~t-~~Gl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~G~-l~fG~~~Gl~~-f~p~ 625 (758)
T 3ott_A 566 CV-KNSIWVST-TNGLWIIDRKTMDARQQNM--TNKRFTSLLFDPKEDC-VYLGGADGFGI-SHSN 625 (758)
T ss_dssp EE-TTEEEEEE-SSCEEEEETTTCCEEEC----CCCCCSEEEEETTTTE-EEEECBSEEEE-EEC-
T ss_pred EC-CCCEEEEC-CCCeEEEcCCCceeEEecC--CCCceeeeEEECCCCc-EEEecCCceEE-EChh
Confidence 64 66555544 5558888988765432111 12233344443 4664 55577888554 4443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0024 Score=64.95 Aligned_cols=205 Identities=11% Similarity=0.070 Sum_probs=131.4
Q ss_pred ecCCCCCeEEEEEcCCCCEEE-EEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~la-s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
+.|-...+..++|+|++..|. +...++.|...|.. ++.++.. .+.+. .....+++.+++. ++++.-.++.+.++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i-~l~g~-~D~EGIa~~~~g~--~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI-PLDFV-KDLETIEYIGDNQ--FVISDERDYAIYVI 96 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE-ECSSC-SSEEEEEECSTTE--EEEEETTTTEEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE-ecCCC-CChHHeEEeCCCE--EEEEECCCCcEEEE
Confidence 556667899999999876555 56778889999988 6655533 23332 4577889988887 66666567889998
Q ss_pred ECCCCce---eeEec------cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCC---CCceEee-------cCCCCe
Q 001403 463 DAVTGSR---TYSFE------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---LGARVDY-------DAPGLG 523 (1084)
Q Consensus 463 d~~~g~~---~~~~~------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~---~~~~~~~-------~~~~~~ 523 (1084)
++..... +.... ........+++.+ .++.|+++.......+|.++. ....... ......
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~--~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR--QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD 174 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET--TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeC--CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence 8765442 22221 1234568899965 445666666665556665541 1111111 112335
Q ss_pred EEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccc------ccCceEEEEEcCCCCEEEEEECCCcEEEE
Q 001403 524 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIW 597 (1084)
Q Consensus 524 i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 597 (1084)
+.++++.|....+++.+. ....+..+|.. |+.+..+.-... .......++|.++|+ ++..++...++++
T Consensus 175 ~S~l~~dp~tg~lliLS~---~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f 249 (255)
T 3qqz_A 175 VSGAEFNQQKNTLLVLSH---ESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRF 249 (255)
T ss_dssp CCEEEEETTTTEEEEEET---TTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEE
T ss_pred ceeEEEcCCCCeEEEEEC---CCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEE
Confidence 689999998887777763 36678999966 556655543320 013678999999997 5555777777777
Q ss_pred ECC
Q 001403 598 DMN 600 (1084)
Q Consensus 598 d~~ 600 (1084)
...
T Consensus 250 ~~~ 252 (255)
T 3qqz_A 250 TPQ 252 (255)
T ss_dssp EC-
T ss_pred Eec
Confidence 643
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.99 E-value=0.008 Score=66.74 Aligned_cols=206 Identities=8% Similarity=0.008 Sum_probs=133.2
Q ss_pred CCCccEEEecCCCCEEEEEe--CCeEEEEEcCCc----eeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 001403 794 QEAVPCFALSKNDAYLFSAS--GGVISLYIVMTF----KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 867 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~ 867 (1084)
...+..++|++.+..|..++ .+.|..+++... .....+.........+++.+.++++.++-...+.|.+.+++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 45678899999877777776 588999988752 233333334456788999874555666666778999999886
Q ss_pred ceeeeeecccccCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE
Q 001403 868 SEVISKLEGHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 945 (1084)
Q Consensus 868 ~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 945 (1084)
......+...-.....|++.|.+.+|..+.. .+.|...+++...... .+.. + . .....+++++++..|..
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~--~~~~--~-l---~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE--N-I---QWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE--EECS--S-C---SCEEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE--EEEC--C-C---CceEEEEEEeCCCEEEE
Confidence 5443333333445789999997666665543 3678888887643221 1111 1 1 14678999998888877
Q ss_pred E--eCCeEEEEEcCCcceeeEeecC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 946 V--HETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 946 ~--~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
+ ..+.|..+|+.... ...+... ......++++ ..+..+++-...+.|..+|..+|+....+.
T Consensus 263 aD~~~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EETTTTEEEEEETTSCC-CEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 5 45689999986433 3333322 2344567777 334556666677889999988886655544
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0011 Score=74.49 Aligned_cols=242 Identities=10% Similarity=0.130 Sum_probs=137.3
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC-CC----cEEEEE
Q 001403 390 SVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DK----TIKVWD 463 (1084)
Q Consensus 390 ~V~~v~fsp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-d~----~i~vwd 463 (1084)
....++|+| ++..|.++...+.|+.+|++++... .+.........++|+++|+. |+.+.. ++ .+.+.+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~----~~~~~~~~P~~ia~d~~G~~--lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS----TVYSGLSKVRTICWTHEADS--MIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE----EEECCCSCEEEEEECTTSSE--EEEEECCSCTTSEEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE----EEecCCCCcceEEEeCCCCE--EEEEeCCCCcccceEEEEe
Confidence 567899998 4666666665578999999876432 22234456889999999984 444332 22 233344
Q ss_pred CCCCcee--eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec-CCCCeEEEEEEcCCCCEEEEEe
Q 001403 464 AVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCG 540 (1084)
Q Consensus 464 ~~~g~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~ 540 (1084)
..+... ..+.. ......+++++. ++.++++-..++.|..++.+......... ........++|+|+|++|+.+.
T Consensus 212 -~~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 212 -RESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp -GGGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred -CCCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence 333322 22221 222445666442 55666666678899999987654422222 2223567899999999777664
Q ss_pred eCCCCCeeEEEecCCC--ceE--eeeeecc------c------cccCceE-EEEEc--------CCCCEEEEEECCCcEE
Q 001403 541 TSKEGESFLVEWNESE--GAI--KRTYQGL------Q------LQHNSVS-VVHFD--------TAKDQILAAGDDHVIK 595 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~--~~~--~~~~~~~------~------~~~~~v~-~~~~s--------~~~~~l~~~~~dg~i~ 595 (1084)
. ....|..++... +.. ...+.+. . ..-.... .++.. +++..+++-...+.|+
T Consensus 289 ~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~ 365 (430)
T 3tc9_A 289 V---NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR 365 (430)
T ss_dssp T---TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred C---CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEE
Confidence 3 256688876542 322 1222221 0 0001223 45553 3455555555677888
Q ss_pred EEECCCCeEEEEEcC---------CC------CCCCcceEEEecC-CCEEEEEECCCeEEEEEcC
Q 001403 596 IWDMNKVQLLTTIDA---------GG------GLPENPRICFNKN-GTLLAVIANENRIKILETP 644 (1084)
Q Consensus 596 iwd~~~~~~~~~~~~---------~~------~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~ 644 (1084)
.++. +|........ .+ .......++++|+ +.++++-..++.|+.++.+
T Consensus 366 ~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 366 ILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 8884 5654443321 00 0123568999995 5555554456778877654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.95 E-value=0.011 Score=63.23 Aligned_cols=233 Identities=8% Similarity=-0.031 Sum_probs=142.2
Q ss_pred CCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceee-EeccCCCcEEEEeecc
Q 001403 409 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPHA 487 (1084)
Q Consensus 409 dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~-~~~~h~~~v~~~~~~~ 487 (1084)
...|+..++++...... .+......+..++|.+.+.. ++.+-...+.|..+++..+.... .+...-.....+++.+
T Consensus 12 ~~~I~~i~l~~~~~~~~--~~~~~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~ 88 (318)
T 3sov_A 12 RRDLRLVDATNGKENAT--IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEEETTCTTSCCE--EEEEEEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred cCeEEEEECCCCceEEE--EEecCCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence 45689999987641111 12222345678999987664 45555567889999987664221 2222223445677743
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccc
Q 001403 488 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 567 (1084)
Q Consensus 488 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 567 (1084)
. ++.++++-...+.|.+++++.................+++.|.+..|+..... ....|...++.... ...+....
T Consensus 89 ~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~~-~~~~~~~~ 164 (318)
T 3sov_A 89 L-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSS-RFIIINSE 164 (318)
T ss_dssp T-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS--SSCEEEEEETTSCS-CEEEECSS
T ss_pred C-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC--CCCEEEEEEcCCCC-eEEEEECC
Confidence 2 34566666677899999987655444444444567899999987777665421 14568888876432 22221111
Q ss_pred cccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 568 LQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 568 ~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
......+++++++..|+.+. ..+.|..+|+........... .......+++.. +..+.+-...+.|..++..++
T Consensus 165 --l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 165 --IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFE-DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp --CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred --CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC--CCCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence 14578999999877777664 567899999875443333321 222345677753 345555556788999998777
Q ss_pred Ceeeecc
Q 001403 647 NSVDAAG 653 (1084)
Q Consensus 647 ~~~~~~~ 653 (1084)
+....+.
T Consensus 240 ~~~~~i~ 246 (318)
T 3sov_A 240 EGLREIH 246 (318)
T ss_dssp CSCEEEE
T ss_pred CceEEEe
Confidence 6554443
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0023 Score=71.78 Aligned_cols=244 Identities=11% Similarity=0.133 Sum_probs=138.6
Q ss_pred CCeEEEEEcCC--CCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC---Cc-EEEE
Q 001403 389 VSVNRVVWSPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD---KT-IKVW 462 (1084)
Q Consensus 389 ~~V~~v~fspd--g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d---~~-i~vw 462 (1084)
.....++|+|+ +..|..+...+.|+.+|..++... .+.........++|+++|+ ++++.... .. +...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~----~~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD----IKTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE----EECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE----EeecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEE
Confidence 35678999995 445555544478999999877533 2333445688999999999 55554321 12 3333
Q ss_pred ECCCCcee-eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc-eEeec-CCCCeEEEEEEcCCCCEEEEE
Q 001403 463 DAVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYD-APGLGCTRMAYSANGRRLFSC 539 (1084)
Q Consensus 463 d~~~g~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~-~~~~~i~~~~~s~d~~~l~~~ 539 (1084)
+...+... ..+. .......+++.+. ++.+.++-..++.|+.++.+++.. ..... ........++|+|+|++|+.+
T Consensus 213 ~~~~~~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 213 TRASGFTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CGGGTTCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred ECCCCeecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 32222110 1111 1223345666432 455666666778899998876554 22211 122233479999999977776
Q ss_pred eeCCCCCeeEEEecCC--CceEe--eeeeccc------------cccCceEEEEE---------cCCCCEEEEEECCCcE
Q 001403 540 GTSKEGESFLVEWNES--EGAIK--RTYQGLQ------------LQHNSVSVVHF---------DTAKDQILAAGDDHVI 594 (1084)
Q Consensus 540 ~~~~~~~~~i~~wd~~--~~~~~--~~~~~~~------------~~~~~v~~~~~---------s~~~~~l~~~~~dg~i 594 (1084)
.. +...|+.++.. ++... ..+.+.. ..-.....+++ .+++..+++-...+.|
T Consensus 291 d~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I 367 (433)
T 4hw6_A 291 YN---GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV 367 (433)
T ss_dssp ET---TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred eC---CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence 53 35678887654 33221 1222210 01134677888 6777666666677889
Q ss_pred EEEECCCCeEEEEEcCCC---------------CCCCcceEEEe-cCCCEEEEEECCCeEEEEEcC
Q 001403 595 KIWDMNKVQLLTTIDAGG---------------GLPENPRICFN-KNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 595 ~iwd~~~~~~~~~~~~~~---------------~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
+.++. +|.......... .......++++ ++|.++++=..++.|+.++++
T Consensus 368 ~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 368 RVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 99985 565443332110 01224578888 566555555556778777654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.012 Score=70.85 Aligned_cols=237 Identities=10% Similarity=-0.031 Sum_probs=144.6
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC----ceeeEeccCC
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 477 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g----~~~~~~~~h~ 477 (1084)
+|+... ...|+..++...... .+......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~----~l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred cccccc-ccceeEeeccCCcce----eeecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 444433 344777777765422 23334456789999986664 4555556788999998753 2223333233
Q ss_pred CcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc
Q 001403 478 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~ 557 (1084)
.....|++.+. .+.++++-...+.|.+.+++.......+.........|++.|.+.+|+..... ....|...++...
T Consensus 471 ~~P~GLAvD~~-~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceeeeeec-CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC
Confidence 45567777543 23566666778899999988665544444445568899999987777765421 1256888888654
Q ss_pred eEeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEE-ECC
Q 001403 558 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANE 635 (1084)
Q Consensus 558 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~d 635 (1084)
.....+...- .....|++++.+..|+.+. ..+.|...++........+...........+++. +..|+.+ ...
T Consensus 548 ~~~~lv~~~l---~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~ 622 (791)
T 3m0c_C 548 DIYSLVTENI---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIIN 622 (791)
T ss_dssp CEEEEECSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTT
T ss_pred ceEEEEeCCC---CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCC
Confidence 4433333222 5688999998877777765 4578999998765555444433333334456654 3344444 446
Q ss_pred CeEEEEEcCCCCeeeec
Q 001403 636 NRIKILETPESNSVDAA 652 (1084)
Q Consensus 636 g~i~iwd~~~~~~~~~~ 652 (1084)
+.|...+..+++.+..+
T Consensus 623 ~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 623 EAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TEEEEEETTTCCCCEEE
T ss_pred CEEEEEeCCCCcceEEe
Confidence 78888887777555444
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0052 Score=64.84 Aligned_cols=194 Identities=12% Similarity=0.156 Sum_probs=123.4
Q ss_pred CEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCC---CCc---EEEEEe-C--CCeEEEEEcC--Cceeeeee
Q 001403 807 AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH---DNN---VIAIGM-D--DSTILIYNAR--SSEVISKL 874 (1084)
Q Consensus 807 ~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~---d~~---~la~g~-~--dg~i~iwd~~--~~~~~~~l 874 (1084)
.+++... .+.+.+||+ +|+.++.+.. +.+..+.+-|. +++ ++++.. . +++|.+|++. +++ +..+
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i 116 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSM 116 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEEC
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeec
Confidence 4444443 688999999 8999988864 55666666551 122 233333 3 5799999773 443 4433
Q ss_pred cc------cc-cCEEEEEE--cCC-CC-EEEEEeCCCcEEEEeCCC---CceeeeeeeecCCCCccCCCCceEEEEccCC
Q 001403 875 EG------HS-KRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 940 (1084)
Q Consensus 875 ~~------h~-~~V~~l~~--spd-~~-~l~s~s~dg~I~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 940 (1084)
.. .. ..+..+++ +|. ++ +++....+|.+..|++.. +.. ..+.++.+.-. +.+..+...+..
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~-~~~lVR~f~lg----sq~EgcvvDd~~ 191 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI-SGKKVRAFKMN----SQTEGMAADDEY 191 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE-EEEEEEEEECS----SCEEEEEEETTT
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc-cceEEEEecCC----CCcceEEEcCCC
Confidence 21 11 56677888 774 44 677888899999999943 322 22333333222 257889999988
Q ss_pred CEEEEEeCC-eEEEEEcC-----CcceeeEeecCC-CCCEEEEEE--ccCCC-EEEEEe-CCCcEEEEEcC-CCceeEEe
Q 001403 941 TRFLLVHET-HLAIYEAE-----ELTCLKQWFPIS-SVPISQATF--SCDCR-MVFTSF-VDGTLSIHEAS-NLEVQCRI 1008 (1084)
Q Consensus 941 ~~la~~~d~-~i~vwd~~-----~~~~~~~~~~~h-~~~v~~l~f--s~dg~-~l~t~~-~dg~i~vwd~~-~~~~~~~~ 1008 (1084)
..|.++.+. .|..++.+ +++.+.....+| ...+..|+. .++|+ ||++++ .+.+..|||.. +.+.+.+|
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 888887544 45555644 344554432334 347888887 56666 666666 56799999997 77888777
Q ss_pred c
Q 001403 1009 L 1009 (1084)
Q Consensus 1009 ~ 1009 (1084)
.
T Consensus 272 ~ 272 (355)
T 3amr_A 272 R 272 (355)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0058 Score=68.51 Aligned_cols=252 Identities=11% Similarity=0.046 Sum_probs=144.6
Q ss_pred CccEEEecC-CCCEEEEEe-C-CeEEEEEcCCceeEEEEcCC---CCCeEEEEE-------cCCCCcEEEEEeCCC----
Q 001403 796 AVPCFALSK-NDAYLFSAS-G-GVISLYIVMTFKTILTIMPP---SPTATSLAF-------NPHDNNVIAIGMDDS---- 858 (1084)
Q Consensus 796 ~v~~l~~s~-dg~~l~~~s-d-g~i~vwd~~~~~~~~~~~~~---~~~i~~l~~-------s~~d~~~la~g~~dg---- 858 (1084)
....|+|+| ++..|.++. . +.|++.|+.++......... ......++| ++ +++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467899998 455555554 3 67999999887766555432 235889999 99 777555555443
Q ss_pred ---eEEEEEcCC-ceee-----eeecccccCEEEEEEcC-CCCEEEEEeCCCcEEEEeCC-------CCce------e--
Q 001403 859 ---TILIYNARS-SEVI-----SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVD-------GWGI------Q-- 913 (1084)
Q Consensus 859 ---~i~iwd~~~-~~~~-----~~l~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~iwd~~-------~~~~------~-- 913 (1084)
.|.+++... ++.. ..+... .....++++| ++.++++-..++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 366665443 2221 122211 2345688999 45556666678889999998 5443 0
Q ss_pred --eeeeeecCCCCccCCCCceEEEEccCCCEEEEE--eCCeEEEEEcC--Cccee--eEeec-----CC---------CC
Q 001403 914 --TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTCL--KQWFP-----IS---------SV 971 (1084)
Q Consensus 914 --~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~i~vwd~~--~~~~~--~~~~~-----~h---------~~ 971 (1084)
...+.....+ .....++|+|+|++|.++ ..+.|+.++.. ++... ..+.. ++ -.
T Consensus 298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 0112222211 246799999999965554 56788886653 33210 11111 10 01
Q ss_pred CEE-EEEEc-------cCCCEEEEEeCCCcEEEEEcCCCceeEEeccccc-------cCCCC------cc-cceeeeEEE
Q 001403 972 PIS-QATFS-------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY-------LRPTT------SC-LHVYPHAIA 1029 (1084)
Q Consensus 972 ~v~-~l~fs-------~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~------~~-~~v~~~~~~ 1029 (1084)
... .++.. ++|.++++-..+..|+.++ .+|... .+..... ...+. .. .--.|..++
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~-TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVS-TYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEE-EEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEE-EEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 233 45554 5677777767778999998 566443 3332110 00010 00 113477899
Q ss_pred ECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 1030 AHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1030 ~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
+++++|.++++=.....|+.+++....
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 998435555555556689998885544
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.80 E-value=0.01 Score=63.33 Aligned_cols=231 Identities=11% Similarity=0.002 Sum_probs=139.2
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE-eCCCEEEEEEccCCccccceeeeecccccEeEEEeec
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 443 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~-~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~ 443 (1084)
..|+..++......+.. +.. ....+.+++|.+.+..|... ...+.|..+++.++..... .+.........+++.+
T Consensus 13 ~~I~~i~l~~~~~~~~~-~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~--~~~~~l~~p~glavd~ 88 (318)
T 3sov_A 13 RDLRLVDATNGKENATI-VVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEETTCTTSCCEE-EEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE--EEEECCSCCCEEEEET
T ss_pred CeEEEEECCCCceEEEE-Eec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE--EEcCCCCCccEEEEEc
Confidence 67788888765322111 111 12356789999865555555 4567899999887642211 1222234567899997
Q ss_pred CCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEe--cCCeEEEEECCCCCceEeecCCC
Q 001403 444 PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPG 521 (1084)
Q Consensus 444 d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~ 521 (1084)
.+.. +.++-...+.|.++++........+.........+++.+.. + .++.+. ..+.|...+++...........-
T Consensus 89 ~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~-g-~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l 165 (318)
T 3sov_A 89 LGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS-G-FMYWTDWGEVPKIERAGMDGSSRFIIINSEI 165 (318)
T ss_dssp TTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG-T-EEEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred CCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC-C-EEEEEecCCCCEEEEEEcCCCCeEEEEECCC
Confidence 6664 45555567899999976543333333444567888886532 3 444444 35788888877544433333334
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 001403 522 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 601 (1084)
Q Consensus 522 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 601 (1084)
.....+++++++..|+.+-. ..+.|..+|+..........+.. .....+++.. +..+.+-...+.|..++..+
T Consensus 166 ~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~---~~P~glav~~-~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 166 YWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFE-DILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp SCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCC---SCEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred CCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCC---CCceEEEEeC-CEEEEEecCCCeEEEEECCC
Confidence 46789999998888887753 35679999886433322222222 4556677643 33444555667888888877
Q ss_pred CeEEEEEc
Q 001403 602 VQLLTTID 609 (1084)
Q Consensus 602 ~~~~~~~~ 609 (1084)
|+....+.
T Consensus 239 G~~~~~i~ 246 (318)
T 3sov_A 239 GEGLREIH 246 (318)
T ss_dssp CCSCEEEE
T ss_pred CCceEEEe
Confidence 76655554
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0091 Score=66.96 Aligned_cols=250 Identities=10% Similarity=0.105 Sum_probs=139.7
Q ss_pred CeEEEEEcC-CCCEEEEE-eCCCEEEEEEccCCccccceeeee-cccccEeEEEe-------ecCCCcEEEEEEeCCC--
Q 001403 390 SVNRVVWSP-DGSLLGVA-YSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAF-------SAPCKQISVITCGDDK-- 457 (1084)
Q Consensus 390 ~V~~v~fsp-dg~~las~-~~dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~l~~-------s~d~~~l~l~s~~~d~-- 457 (1084)
....++|+| ++..|..+ ...+.|++.|.+++...... ... ........++| +++|+. ++.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~-~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPL-NINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEE-CCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEE-ccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence 467899999 35545444 44467888998886543211 110 12235889999 999984 44443332
Q ss_pred -----cEEEEECCC-Ccee-----eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECC-------CCCc------
Q 001403 458 -----TIKVWDAVT-GSRT-----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------SLGA------ 513 (1084)
Q Consensus 458 -----~i~vwd~~~-g~~~-----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-------~~~~------ 513 (1084)
.|.+.+... |... ..+... .....+++++. ++.++++-..++.|..+|++ ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 366666443 2221 122211 12234566442 45666777788889999987 4432
Q ss_pred -----e-Eeec-CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecC--CCceEe--eeeecc---c---------ccc
Q 001403 514 -----R-VDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE--SEGAIK--RTYQGL---Q---------LQH 570 (1084)
Q Consensus 514 -----~-~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~--~~~~~~--~~~~~~---~---------~~~ 570 (1084)
. ..+. ........++|+|+|+.|+.+-. +...|+.++. .++... ..+.+. . ..-
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 1 1111 22345678999999997666642 3567888554 333321 222221 0 001
Q ss_pred CceE-EEEEc-------CCCCEEEEEECCCcEEEEECCCCeEEEEEcCCC----------------------CCCCcceE
Q 001403 571 NSVS-VVHFD-------TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG----------------------GLPENPRI 620 (1084)
Q Consensus 571 ~~v~-~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~v 620 (1084)
.... .++.. +++..+++=.....|+.++ .+|. +.++.+.+ .......+
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 1234 45554 4556666666778899998 4564 33433211 01224578
Q ss_pred EEecC-CCEEEEEECCCeEEEEEcCCCCee
Q 001403 621 CFNKN-GTLLAVIANENRIKILETPESNSV 649 (1084)
Q Consensus 621 ~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~ 649 (1084)
+++++ |.++++=..++.|+.+++......
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 89986 655555556788998888765443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.007 Score=63.87 Aligned_cols=193 Identities=12% Similarity=0.136 Sum_probs=120.7
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeccc--CCCc---EEEEEe-c--CCeEEEEECCCCC-ceEeecC
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK--ENIH---FIFSIS-V--DGKIKAWLYDSLG-ARVDYDA 519 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~--~~~~---~l~s~s-~--dg~i~iwd~~~~~-~~~~~~~ 519 (1084)
++++....+-+.+||+ +|+.++.+.. +.++.+.+.+. -.|. ++++.. . +++|++|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4666667788999998 9999988864 45666655331 0111 223333 3 5789999875322 2333311
Q ss_pred ------CC-CeEEEEEE--cCC-CCE-EEEEeeCCCCCeeEEEecC-------CCceEeeeeeccccccCceEEEEEcCC
Q 001403 520 ------PG-LGCTRMAY--SAN-GRR-LFSCGTSKEGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHFDTA 581 (1084)
Q Consensus 520 ------~~-~~i~~~~~--s~d-~~~-l~~~~~~~~~~~~i~~wd~-------~~~~~~~~~~~~~~~~~~v~~~~~s~~ 581 (1084)
.. ..+..+|+ +|. +++ +++... ++.+..|++ .+++.++.+... ..+..+...+.
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECS----SCEEEEEEETT
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCC----CCcceEEEcCC
Confidence 11 45666777 774 443 444332 456888877 244667777654 46888999999
Q ss_pred CCEEEEEECCCcEEEEECC-----CCeEEEEEcCCCCCCCcceEEEe--cCCC-EEEEEE-CCCeEEEEEcC-CCCeeee
Q 001403 582 KDQILAAGDDHVIKIWDMN-----KVQLLTTIDAGGGLPENPRICFN--KNGT-LLAVIA-NENRIKILETP-ESNSVDA 651 (1084)
Q Consensus 582 ~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~s--~~~~-~l~~~~-~dg~i~iwd~~-~~~~~~~ 651 (1084)
..+|+.+-++..|..++.+ +++.+..+....-...+..+++- ++++ +|++.+ .++++.+||.. +.+.+..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 9999999999877777755 35566555432222246777774 5555 566655 57799999996 4444444
Q ss_pred c
Q 001403 652 A 652 (1084)
Q Consensus 652 ~ 652 (1084)
+
T Consensus 271 f 271 (355)
T 3amr_A 271 F 271 (355)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.11 Score=55.96 Aligned_cols=233 Identities=14% Similarity=0.123 Sum_probs=154.0
Q ss_pred cEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ceeeeeecc
Q 001403 798 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEG 876 (1084)
Q Consensus 798 ~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~-~~~~~~l~~ 876 (1084)
.+.-.+|..+.+|.-...++.+||+++.+.+....-. ..|.--.|-. .+.|+..+ +..|+-|++.. ..+++.+.-
T Consensus 69 dsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 69 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp SEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred ceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC-CCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheec
Confidence 3566788889898888899999999999888887643 3566677764 34666655 56799999974 345666665
Q ss_pred cc----cCEEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCC-----
Q 001403 877 HS----KRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ----- 940 (1084)
Q Consensus 877 h~----~~V~~l~~spd~~~l~s~s~-------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg----- 940 (1084)
|. ..|..-..++|.++++..|- .|.+.+|.++.+. -+..+||.. .-..+-.+|
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~ 213 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEES 213 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC------EEEECCSEE-----EEEEEECTTCSSEE
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc------cchheeeee-----eeEEEecCCCCCCc
Confidence 53 46888888999999886542 4778999998743 344566643 122232333
Q ss_pred CEEEEEe----CCeEEEEEcCCc---ce-----eeE-eecC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 001403 941 TRFLLVH----ETHLAIYEAEEL---TC-----LKQ-WFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1005 (1084)
Q Consensus 941 ~~la~~~----d~~i~vwd~~~~---~~-----~~~-~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~ 1005 (1084)
.+++.+. .++++|.++... .. ... .++. -..---++..|+.-..++.-+.-|.|.+||+.+|.++
T Consensus 214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence 2333342 268999998543 11 111 1111 1334456778887778888889999999999999998
Q ss_pred EEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 1006 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
.+-. -+.+.|+.. +.+. +..-++.....|+|.--.+.+..
T Consensus 294 ~~nr--------Is~~~iF~t--~~~~-~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 294 YMNR--------ISGETIFVT--APHE-ATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEE--------CCSSCEEEE--EEET-TTTEEEEEETTCEEEEEEECTTT
T ss_pred eeec--------ccCCceEEe--cccC-CCCcEEEEccCceEEEEEEcccc
Confidence 6654 124445532 2333 24556666699998887776543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.035 Score=66.90 Aligned_cols=205 Identities=8% Similarity=-0.009 Sum_probs=128.0
Q ss_pred CCCccEEEecCCCCEEEEEe--CCeEEEEEcCCc----eeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 001403 794 QEAVPCFALSKNDAYLFSAS--GGVISLYIVMTF----KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 867 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~ 867 (1084)
...+..+++++.+..|..+. .+.|+.+++... .....+.........||+.+.+++++++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 44567899998777776665 578998888752 223333334456678999884456666666788999999875
Q ss_pred ceeeeeecccccCEEEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE
Q 001403 868 SEVISKLEGHSKRVTGLVFSDALNILVSSGG-D-AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 945 (1084)
Q Consensus 868 ~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~-d-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 945 (1084)
......+...-.....|++.|.+.+|..+.. . +.|...+++...... ++.. .. .....|++++.+..|..
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~--lv~~---~l---~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE---NI---QWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EECS---SC---SCEEEEEEETTTTEEEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE--EEeC---CC---CCceEEEEecCCCeEEE
Confidence 4433333334456889999998666655543 2 678888887643222 2211 11 15779999988887777
Q ss_pred E--eCCeEEEEEcCCcceeeEeecC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEe
Q 001403 946 V--HETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1008 (1084)
Q Consensus 946 ~--~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~ 1008 (1084)
+ ..+.|...++... ....+... .-....+|++.. +.++++-...+.|...|..+|+.+..+
T Consensus 575 aD~~~~~I~~~d~dG~-~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EeCCCCcEEEEecCCC-ceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 5 4567999998643 33333332 123445666643 344445456678888887777655444
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.015 Score=63.30 Aligned_cols=228 Identities=11% Similarity=0.066 Sum_probs=121.3
Q ss_pred CccEEEecCCCCEEEEEeCCeEEEEEcCCcee--EEEEc---CCCCCeEEEEEcCCC----CcEEEEEeCC-----CeEE
Q 001403 796 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIM---PPSPTATSLAFNPHD----NNVIAIGMDD-----STIL 861 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~--~~~~~---~~~~~i~~l~~s~~d----~~~la~g~~d-----g~i~ 861 (1084)
....++|.|||+++++-..|.|.+++ +++. +..+. ........++|+| + +.+.++-... +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEEE
Confidence 46789999999977776679999998 4432 22222 1235688999999 5 4444443332 6788
Q ss_pred EEEcCCce-----e-eeeec---ccccCEEEEEEcCCCCEEEEEeCC-------------CcEEEEeCCCCcee------
Q 001403 862 IYNARSSE-----V-ISKLE---GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ------ 913 (1084)
Q Consensus 862 iwd~~~~~-----~-~~~l~---~h~~~V~~l~~spd~~~l~s~s~d-------------g~I~iwd~~~~~~~------ 913 (1084)
.|+...+. . +..+. +.......++|.|||.+.++.+.. |.|.-++.+. ...
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~ 187 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL 187 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence 88877531 1 12233 111123579999999877775432 4455555443 100
Q ss_pred -----eeeeeecCCCCccCCCCceEEEEcc-CCCEEEEE-eCCeE------EEEEcCCcc------------------ee
Q 001403 914 -----TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV-HETHL------AIYEAEELT------------------CL 962 (1084)
Q Consensus 914 -----~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~-~d~~i------~vwd~~~~~------------------~~ 962 (1084)
....+. .++. ....++|+| +|.+.++- ..+.+ .|.-+..|. .+
T Consensus 188 ~~~~~~~~i~a--~G~r----np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 188 GRRGARPEVYS--LGHR----NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp TCTTSCTTEEE--ECCS----EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCCCCccEEE--EcCC----CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 000000 1111 256789999 67766662 22221 233222222 11
Q ss_pred eEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEe-ccccccCCCCcccceeeeEEEECCCCCCEEEEE
Q 001403 963 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI-LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1041 (1084)
Q Consensus 963 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~ 1041 (1084)
.. . .+......++| .+|.++++....+.|...++......... ....++.. .-++..+++.| ||.+.++.
T Consensus 262 ~~-~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~rp~~v~~~p-dG~lyv~~ 332 (352)
T 2ism_A 262 YF-W-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-----FGRLREVQVGP-DGALYVTT 332 (352)
T ss_dssp EE-C-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-----SCCEEEEEECT-TSCEEEEE
T ss_pred Ee-c-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-----CCCeeEEEECC-CCcEEEEE
Confidence 11 1 22335677888 56777666666677877777654311000 00011111 12466788888 57666554
Q ss_pred e
Q 001403 1042 L 1042 (1084)
Q Consensus 1042 ~ 1042 (1084)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00046 Score=82.78 Aligned_cols=205 Identities=9% Similarity=0.011 Sum_probs=124.3
Q ss_pred CCccEEEecCCCCEEEEEe--CCeEEEEEcCC----ceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 001403 795 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 868 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~ 868 (1084)
..+..++|++.+..|..+. .+.|+.+++.+ ......+.........+++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3566889999888877775 57899999875 22222222122345678888635666666566789999998755
Q ss_pred eeeeeecccccCEEEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE
Q 001403 869 EVISKLEGHSKRVTGLVFSDALNILVSSGG-D-AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 946 (1084)
Q Consensus 869 ~~~~~l~~h~~~V~~l~~spd~~~l~s~s~-d-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 946 (1084)
.....+.........+++.|++.+|..+.. . +.|.+.++....... ++.. . . .....|+|+|++..|.++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~~~--~-l---~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE--N-I---QWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ESCS--S-C---SSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EEeC--C-C---CCccEEEEeccCCEEEEE
Confidence 433333322345678899987655554432 2 678887776532111 1111 1 1 135689999987766664
Q ss_pred --eCCeEEEEEcCCcceeeEeecC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 947 --HETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 947 --~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
..+.|.++++.... ...+... .......|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 55689999986433 3332221 1223345566544 455555667899999999898876664
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.014 Score=61.06 Aligned_cols=204 Identities=12% Similarity=0.078 Sum_probs=125.7
Q ss_pred CCCCccEEEecCCCCEEEEEe--CCeEEEEEcCCceeEEE-EcC----CC--CCeEEEEE---cCCCCcEEEEEe-----
Q 001403 793 SQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILT-IMP----PS--PTATSLAF---NPHDNNVIAIGM----- 855 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~-~~~----~~--~~i~~l~~---s~~d~~~la~g~----- 855 (1084)
......++.|.+....+..++ .++|..||...+..... +.+ .. ..+..+.+ .| +++++++..
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af 89 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSF 89 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTT
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccc
Confidence 344556889988666666666 79999999986644333 222 11 13578999 68 688887644
Q ss_pred --------CCCeEEEEEcC---Cceeeeeec--ccc-----------cCEEEEEEcCCCCEEEEEeCC-CcEEEEeCCCC
Q 001403 856 --------DDSTILIYNAR---SSEVISKLE--GHS-----------KRVTGLVFSDALNILVSSGGD-AQIFVWDVDGW 910 (1084)
Q Consensus 856 --------~dg~i~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~spd~~~l~s~s~d-g~I~iwd~~~~ 910 (1084)
.+..|..||+. +++.+.... +.. .....++..++|+..++++.- +.|...+.+..
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 26789999999 787664433 221 247899999999999998888 77766666643
Q ss_pred ceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcce--eeEeecCC---CCCEEEE-EEccCCC
Q 001403 911 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC--LKQWFPIS---SVPISQA-TFSCDCR 983 (1084)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~--~~~~~~~h---~~~v~~l-~fs~dg~ 983 (1084)
.... ..+...... .....+.+++.|||..|++. ..+.|..+|+.+... +..-..+. -.....+ .--.+|+
T Consensus 170 ~~~~-~~~~~~~~~--~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~ 246 (334)
T 2p9w_A 170 TVST-FAWESGNGG--QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNE 246 (334)
T ss_dssp CEEE-EEECCCCSS--SCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred EEee-eeecCCCcc--cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCE
Confidence 2211 111111111 11247799999999988884 588899999885333 21110021 1223443 3234777
Q ss_pred E-EEEEeCCCcEEEEEcC
Q 001403 984 M-VFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 984 ~-l~t~~~dg~i~vwd~~ 1000 (1084)
. |++....+.+.+.+-+
T Consensus 247 vllV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 247 SVLVGARAPYAISFRSWD 264 (334)
T ss_dssp EEEEEEETTEEEEEECSS
T ss_pred EEEEEcCCCCEEEEECCC
Confidence 7 5555555555555443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00041 Score=83.21 Aligned_cols=234 Identities=10% Similarity=-0.011 Sum_probs=133.9
Q ss_pred CCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC----CceeeEeccCCCcEEEEe
Q 001403 409 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----GSRTYSFEGHGAPVYSLC 484 (1084)
Q Consensus 409 dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~----g~~~~~~~~h~~~v~~~~ 484 (1084)
.+.|++.++.+.+.... + .....+..++|.+.+.. ++++-...+.|..+++.+ ......+.........++
T Consensus 385 ~~~I~~id~~~~~~~~~---~-~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSL---I-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEECC---S-CCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred ccceEEEeCCCCcceee---e-ccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 34677788776543321 1 22235678999987763 344444567899999875 222222211112234566
Q ss_pred ecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeee
Q 001403 485 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 564 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 564 (1084)
+.+. ++.++++-...+.|.+.+++.......+.........+++.|++.+|+..... ..+.|..+++..... ..+.
T Consensus 460 vD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~--~~~~I~~~~~dG~~~-~~l~ 535 (699)
T 1n7d_A 460 VDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVDI-YSLV 535 (699)
T ss_dssp CCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS--SSCCEEBCCSSSCCC-CEES
T ss_pred EEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC--CCCeEEEEeCCCCCe-eEEE
Confidence 6432 34555565667889999887654444333333455778999977766655321 125688887754322 2221
Q ss_pred ccccccCceEEEEEcCCCCEEEEE-ECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 565 GLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 565 ~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
... ......++|+|++..|+.+ +..+.|.++++........+...........+++..+ .++++....+.|..++.
T Consensus 536 ~~~--l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 536 TEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR 612 (699)
T ss_dssp CSS--CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred eCC--CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence 111 1356789999987666555 4667899999875443333332222223456666654 44555556688999998
Q ss_pred CCCCeeeeccc
Q 001403 644 PESNSVDAAGV 654 (1084)
Q Consensus 644 ~~~~~~~~~~~ 654 (1084)
.+++.+..+..
T Consensus 613 ~~G~~~~~i~~ 623 (699)
T 1n7d_A 613 LTGSDVNLLAE 623 (699)
T ss_dssp TTEEEEECCCT
T ss_pred cCCCceEEeec
Confidence 87766665543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.02 Score=62.23 Aligned_cols=227 Identities=12% Similarity=0.069 Sum_probs=126.5
Q ss_pred CCccEEEecCCCCEEEEEeCCeEEEEEcCCce-eEEEEc---CCCCCeEEEEEcCC---CCcEEEEEeC---C----CeE
Q 001403 795 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-TILTIM---PPSPTATSLAFNPH---DNNVIAIGMD---D----STI 860 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~-~~~~~~---~~~~~i~~l~~s~~---d~~~la~g~~---d----g~i 860 (1084)
.....++|.|||+++++-.+|.|.+++ .+++ .+..+. ........++++|+ ++.+.++-+. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 346789999999977776689999987 4454 222221 12356889999993 3544444332 3 578
Q ss_pred EEEEcCCc-------eee-eeec---ccccCEEEEEEcCCCCEEEEEeCC-------------CcEEEEeCCCCcee---
Q 001403 861 LIYNARSS-------EVI-SKLE---GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ--- 913 (1084)
Q Consensus 861 ~iwd~~~~-------~~~-~~l~---~h~~~V~~l~~spd~~~l~s~s~d-------------g~I~iwd~~~~~~~--- 913 (1084)
..|+...+ +.+ ..+. .|. ...|+|.|||.+.++.+.. |.|.-.+.+. ...
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~n 184 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPADN 184 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTTS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCCCC
Confidence 88887654 111 1122 132 4579999999888875432 3444444432 100
Q ss_pred ---eeeeeecCCCCccCCCCceEEEEcc-CCCEEEEE--eCC--eEEEEEcCCcc------------------eeeEeec
Q 001403 914 ---TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HET--HLAIYEAEELT------------------CLKQWFP 967 (1084)
Q Consensus 914 ---~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~--~d~--~i~vwd~~~~~------------------~~~~~~~ 967 (1084)
....+. .++. ....++|+| +|.+.++- .+. .|.+.. .|. .+..+..
T Consensus 185 pf~~~~i~a--~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~ 256 (354)
T 3a9g_A 185 PFPNSPIWS--YGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS 256 (354)
T ss_dssp SSTTCCEEE--ECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred CCCCCcEEE--EccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence 000111 1222 356899999 67776662 222 244332 221 1111101
Q ss_pred CCCCCEEEEEEc-------cCCCEEEEEeCCCcEEEEEcCCC-ceeEEeccccccCCCCcccceeeeEEEECCCCCCEEE
Q 001403 968 ISSVPISQATFS-------CDCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1039 (1084)
Q Consensus 968 ~h~~~v~~l~fs-------~dg~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~ 1039 (1084)
. ......++|. .+|.++++....+.|...++... +...... ++.. ..-++..+++.| ||.+.+
T Consensus 257 ~-~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~~----~~~rp~~v~~~p-DG~lyv 327 (354)
T 3a9g_A 257 E-TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFKN----VFGRLRDVVIDD-DGGILI 327 (354)
T ss_dssp C-CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECTT----TSCCEEEEEECT-TSCEEE
T ss_pred C-CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---eccC----CCCCeeEEEECC-CCcEEE
Confidence 1 3467788883 57877777767778888888754 3321111 1111 123467788999 577666
Q ss_pred EEe
Q 001403 1040 VGL 1042 (1084)
Q Consensus 1040 ~~~ 1042 (1084)
+..
T Consensus 328 ~~~ 330 (354)
T 3a9g_A 328 STS 330 (354)
T ss_dssp EEC
T ss_pred EEe
Confidence 654
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.03 Score=60.82 Aligned_cols=238 Identities=9% Similarity=0.069 Sum_probs=127.1
Q ss_pred CccEEEecCCCC-EEEEEeCCeEEEEEcCCceeEEEEc-------CCCCCeEEEEEcCC---CCcEEEEEeC-------C
Q 001403 796 AVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM-------PPSPTATSLAFNPH---DNNVIAIGMD-------D 857 (1084)
Q Consensus 796 ~v~~l~~s~dg~-~l~~~sdg~i~vwd~~~~~~~~~~~-------~~~~~i~~l~~s~~---d~~~la~g~~-------d 857 (1084)
....|+|.|+|+ ++++-..|.|++++.. ++....+. ........++++|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 457899999999 7766667999999854 33221111 12345689999993 3444444332 2
Q ss_pred CeEEEEEcCCc-------eee-eeec-----ccccCEEEEEEcCCCCEEEEEeCC-------------CcEEEEeCCCCc
Q 001403 858 STILIYNARSS-------EVI-SKLE-----GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWG 911 (1084)
Q Consensus 858 g~i~iwd~~~~-------~~~-~~l~-----~h~~~V~~l~~spd~~~l~s~s~d-------------g~I~iwd~~~~~ 911 (1084)
..|..|++..+ +.+ ..+. .|. ...|+|.|||.+.++.+.. |.|.-.+.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666766532 111 1121 132 3569999999777765442 345555654310
Q ss_pred ee----------eeeeeecCCCCccCCCCceEEEEcc-CCCEEEEE--eCCeEEEEEcCCcce-----------------
Q 001403 912 IQ----------TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEELTC----------------- 961 (1084)
Q Consensus 912 ~~----------~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~--~d~~i~vwd~~~~~~----------------- 961 (1084)
.. ...... .++. ....++|.| +|.+.++- .++.=.|.-+..+.-
T Consensus 176 p~~npf~~~~~~~~~i~a--~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWS--YGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp CTTCTTTTSTTSCTTEEE--ECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCcCCCCCCccEEE--EcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 00 000110 1222 367899999 67666652 222222222211110
Q ss_pred ------------eeEeecCCCCCEEEEEEcc-------CCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccc
Q 001403 962 ------------LKQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLH 1022 (1084)
Q Consensus 962 ------------~~~~~~~h~~~v~~l~fs~-------dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1022 (1084)
...+.-.+......++|.. +|.++++....+.|...++..+....... .+. ...
T Consensus 250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~----~~~ 322 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT----DRG 322 (353)
T ss_dssp TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG----GGC
T ss_pred CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc----CCC
Confidence 0000011234677788863 57777777777888888888765432211 111 111
Q ss_pred eeeeEEEECCCCCCEEEEEe-CCCcEEEEcC
Q 001403 1023 VYPHAIAAHPLKPTQFAVGL-TNGEVYVIEP 1052 (1084)
Q Consensus 1023 v~~~~~~~~p~d~~~l~~~~-~dg~v~vw~~ 1052 (1084)
-.+..+++.| ||.+.++.. .+| +||.+
T Consensus 323 ~rp~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 323 QRIRDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp CCEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred CceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 3567889999 577666543 344 45544
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.013 Score=63.00 Aligned_cols=111 Identities=13% Similarity=0.107 Sum_probs=82.4
Q ss_pred EEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCC----CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee----
Q 001403 799 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV---- 870 (1084)
Q Consensus 799 ~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~---- 870 (1084)
-.....+|..++.+.++.||.-++.....-+.+... -..|..+..+| +|++||..+ +..|.|-.+..+..
T Consensus 25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence 345567889999999999999998754445555443 23688999999 899999876 55799988874321
Q ss_pred --------eeeecc------cccCEEEEEEcCC---CCEEEEEeCCCcEEEEeCCCCc
Q 001403 871 --------ISKLEG------HSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDGWG 911 (1084)
Q Consensus 871 --------~~~l~~------h~~~V~~l~~spd---~~~l~s~s~dg~I~iwd~~~~~ 911 (1084)
...+.- ...+|..+.|+|- +..|++-..|++|++||+....
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~ 160 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQ 160 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTT
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCC
Confidence 111211 2467999999994 5689999999999999999743
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.029 Score=61.00 Aligned_cols=231 Identities=11% Similarity=0.026 Sum_probs=116.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeee---ecccccEeEEEeecC---CCcEEEEEEeCC-----C
Q 001403 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI---DAHVGNVNDLAFSAP---CKQISVITCGDD-----K 457 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l---~~h~~~V~~l~~s~d---~~~l~l~s~~~d-----~ 457 (1084)
.....++|.|||+++++ ..+|.|.+++ +++. .....+ .........|+|+|+ +.. +.++.... +
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~-lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPY-VYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCE-EEEEEecCCCCCcc
Confidence 45778999999985555 5668899998 3431 111111 122346789999998 554 33333322 5
Q ss_pred cEEEEECCCCc-----ee-eEec---cCCCcEEEEeecccCCCcEEEEEec-------------CCeEEEEECCCC----
Q 001403 458 TIKVWDAVTGS-----RT-YSFE---GHGAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDSL---- 511 (1084)
Q Consensus 458 ~i~vwd~~~g~-----~~-~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~-------------dg~i~iwd~~~~---- 511 (1084)
.|..++...+. .+ ..+. +.......++|. +||.+.++.+. .|.|.-++.+..
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG--PDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC--TTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC--CCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 78888876442 11 1232 111123467774 46666665432 145555555430
Q ss_pred --------CceEeecCCCCeEEEEEEcC-CCCEEEEEeeCCCC-----CeeEEEecCCC--------c--------eEee
Q 001403 512 --------GARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEG-----ESFLVEWNESE--------G--------AIKR 561 (1084)
Q Consensus 512 --------~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~-----~~~i~~wd~~~--------~--------~~~~ 561 (1084)
.....+...-.....++|+| +|++.++- ...+. ...|.+..... + ..+.
T Consensus 184 npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d-~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSE-HGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEE-ECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEE-cCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 00001111122456789999 55554443 22111 01233322110 0 1111
Q ss_pred eeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCe----E--EEEEcCCCCCCCcceEEEecCCCEEEEEEC
Q 001403 562 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ----L--LTTIDAGGGLPENPRICFNKNGTLLAVIAN 634 (1084)
Q Consensus 562 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~----~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 634 (1084)
.+.. ......++| .++..+++.-..+.|...++.... . ...+- .....+..+++.|||.++++...
T Consensus 263 ~~~~----~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 263 FWPQ----GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL--SGFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp ECTT----CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE--ESSCCEEEEEECTTSCEEEEECS
T ss_pred ecCC----CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec--ccCCCeeEEEECCCCcEEEEEeC
Confidence 1111 124566777 456555555566677777665332 1 11221 11235788999999977766543
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.36 Score=51.99 Aligned_cols=259 Identities=11% Similarity=0.087 Sum_probs=148.2
Q ss_pred CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecC
Q 001403 546 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 625 (1084)
Q Consensus 546 ~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 625 (1084)
...|.+.|+.++..+.+-.- ...+.-.+|..+.++.-. ..++.|+|+++.+.++....... |.--.|-.+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~---VvfWkWis~ 116 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWKWISL 116 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC---CCEEEEEET
T ss_pred CCeEEEEECCCCCcceeccc------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC---ceEEEecCC
Confidence 44688888887654422221 123445788887777654 68999999999999999886554 555555544
Q ss_pred CCEEEEEECCCeEEEEEcCCC-CeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcccc
Q 001403 626 GTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 704 (1084)
Q Consensus 626 ~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~ 704 (1084)
+.|+..+. ..|+-|++... .+...+.-|..
T Consensus 117 -~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~----------------------------------------------- 147 (494)
T 1bpo_A 117 -NTVALVTD-NAVYHWSMEGESQPVKMFDRHSS----------------------------------------------- 147 (494)
T ss_dssp -TEEEEECS-SEEEEEESSSSCCCEEEEECCGG-----------------------------------------------
T ss_pred -CeEEEEcC-CeeEEecccCCCCchhheecchh-----------------------------------------------
Confidence 35555544 68999998643 22221111100
Q ss_pred ccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeec-------CCceEEeeccCCccCcCcccceecCCeeecC
Q 001403 705 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-------NGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 777 (1084)
Q Consensus 705 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1084)
-....|.....+++.++++..+- .|.+.+|+...+..
T Consensus 148 -------------------L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s----------------- 191 (494)
T 1bpo_A 148 -------------------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS----------------- 191 (494)
T ss_dssp -------------------GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-----------------
T ss_pred -------------------cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-----------------
Confidence 01234555555666666554432 24555655443211
Q ss_pred CCCCccccccCcCCCCCCCccEEEecCC---CCEEEEEe----CCeEEEEEcCCc--------eeEEE-EcC---CCCCe
Q 001403 778 RHGPQFMVNDTTDSNSQEAVPCFALSKN---DAYLFSAS----GGVISLYIVMTF--------KTILT-IMP---PSPTA 838 (1084)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~v~~l~~s~d---g~~l~~~s----dg~i~vwd~~~~--------~~~~~-~~~---~~~~i 838 (1084)
.. +. +|......+.+.-+ ...++.+. .+++++.++... +.... +-. ..+..
T Consensus 192 -----Q~---ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFP 261 (494)
T 1bpo_A 192 -----QP---IE--GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP 261 (494)
T ss_dssp -----EE---EC--CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCE
T ss_pred -----ch---he--eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCce
Confidence 00 00 12211111111110 11233332 378999988542 11111 111 23456
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001403 839 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 910 (1084)
Q Consensus 839 ~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~ 910 (1084)
.++..|+ .-.++..-+.-|.|++||+.++.++..-+--...|..-+-..+..=++.....|.|.--.++..
T Consensus 262 vamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 262 VAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred eEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 7888998 6668889999999999999999998776655666666555555455555567777766666653
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.041 Score=58.99 Aligned_cols=207 Identities=10% Similarity=0.034 Sum_probs=114.2
Q ss_pred CeEEEEEcCCCCEEEEEe------------CCCEEEEEEccCCcc-ccceeeeec-----ccccEeEEEeec--CCCcEE
Q 001403 390 SVNRVVWSPDGSLLGVAY------------SKHIVQLYAYHGGSD-ARQQLEIDA-----HVGNVNDLAFSA--PCKQIS 449 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~~------------~dg~v~iwd~~~~~~-~~~~~~l~~-----h~~~V~~l~~s~--d~~~l~ 449 (1084)
..-.++..|+|..+++++ .+|.|.++|.++... ...+ .+.+ .......+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 344566788886666652 689999999984321 2222 2332 233566777765 454213
Q ss_pred EEEEeC--CCcEEEEECCCCc-e---eeEeccC-CCcEEEEeecccCCCcEEEEEec-----------------CCeEEE
Q 001403 450 VITCGD--DKTIKVWDAVTGS-R---TYSFEGH-GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKA 505 (1084)
Q Consensus 450 l~s~~~--d~~i~vwd~~~g~-~---~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~-----------------dg~i~i 505 (1084)
+++-.. +.+|.+|+++.+. . +.++.+. -...+.+.+.+ +|.+.++... .|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 333222 5678888766432 1 2334332 23467777744 5666666531 234444
Q ss_pred EECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-ceE--eeeeeccccccCceEEEEEcC-C
Q 001403 506 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-A 581 (1084)
Q Consensus 506 wd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~~~v~~~~~s~-~ 581 (1084)
++. .+.. .....-.....++|+||++.|+.+.. ..+.|+.|++.. ++. .+.+. . .+....+++.+ +
T Consensus 208 ~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~-~---~g~PDGi~vD~e~ 277 (355)
T 3sre_A 208 YSP--NDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLS-F---DTLVDNISVDPVT 277 (355)
T ss_dssp ECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEE-C---SSEEEEEEECTTT
T ss_pred EEC--CeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEe-C---CCCCceEEEeCCC
Confidence 443 3222 22222234678999999999988764 255699998753 332 22331 1 25677889999 5
Q ss_pred CCEEEEEECC-CcEEEEECC--CCeEEEEEc
Q 001403 582 KDQILAAGDD-HVIKIWDMN--KVQLLTTID 609 (1084)
Q Consensus 582 ~~~l~~~~~d-g~i~iwd~~--~~~~~~~~~ 609 (1084)
|+..+++..+ +.|..|+.. .+..+..+.
T Consensus 278 G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 278 GDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 8877766533 344445543 244444443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.024 Score=60.13 Aligned_cols=235 Identities=11% Similarity=0.001 Sum_probs=117.9
Q ss_pred CCCEEEEEe-CC-----CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC-----CcEEEEECCCC
Q 001403 399 DGSLLGVAY-SK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTG 467 (1084)
Q Consensus 399 dg~~las~~-~d-----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d-----~~i~vwd~~~g 467 (1084)
++..++.|+ .+ ..+.+||+.+++-.. ...+....... + +...+++ +++.|+.+ ..+.+||+.++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~-~~~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKRRYV-A-SVSLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCCBSC-E-EEEETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhhccc-c-EEEECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 445566665 32 358888988764211 11111111111 1 2223455 56666654 46899998877
Q ss_pred c---ee--eEeccCCCcEEEEeecccCCCcEEEEEecC-----CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEE
Q 001403 468 S---RT--YSFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 537 (1084)
Q Consensus 468 ~---~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 537 (1084)
+ -. ..+......-..+.+ ++.+++.|+.+ ..+.+||+.+.+-...-..+.......+..-+++.++
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 164 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYC 164 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEE
Confidence 6 22 222111111122222 44667777654 3578888776543222111111111111123667777
Q ss_pred EEeeCCC-CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeEEEEEcCC
Q 001403 538 SCGTSKE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAG 611 (1084)
Q Consensus 538 ~~~~~~~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~ 611 (1084)
.++.++. ....+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||..+.+....-...
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 7664332 13458899988876543321111 1112222333 55666666653 56899999988766543322
Q ss_pred CCCCCcceEEEecCCCEEEEEECC-----CeEEEEEcCCCC
Q 001403 612 GGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESN 647 (1084)
Q Consensus 612 ~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 647 (1084)
.. .....+..-++++++.|+.+ ..+.+||..+.+
T Consensus 242 ~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 242 TP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred Cc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 22 12222333367777777655 457788887653
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.026 Score=59.04 Aligned_cols=168 Identities=10% Similarity=0.114 Sum_probs=108.7
Q ss_pred EcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee-eecc----cc--cCEEEEEE---cCCCCEEEEEe---
Q 001403 831 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLEG----HS--KRVTGLVF---SDALNILVSSG--- 897 (1084)
Q Consensus 831 ~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~-~l~~----h~--~~V~~l~~---spd~~~l~s~s--- 897 (1084)
+........+++|.+.++.++++.-..++|..|+...+.... .+.+ .. ..+..|.| .|+++++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 333444556789988556666655589999999998654332 3332 11 13578999 58888887544
Q ss_pred ----------CCCcEEEEeCC---CCceeeeeeeecCC-C------CccCCCCceEEEEccCCCEEEE-EeC-CeEEEEE
Q 001403 898 ----------GDAQIFVWDVD---GWGIQTCRSLQTPD-G------VMTLAPSETHIQFHKDQTRFLL-VHE-THLAIYE 955 (1084)
Q Consensus 898 ----------~dg~I~iwd~~---~~~~~~~~~~~~~~-~------~~~~~~~v~~~~~s~dg~~la~-~~d-~~i~vwd 955 (1084)
.+..|..+|+. +++.....-+.... + .. ......++..++|+.-++ +.. +.|...+
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~--~~~~nDvavD~~GnaYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKR--PFGVVQSAQDRDGNSYVAFALGMPAIARVS 165 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSC--CEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccccccccccc--ccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence 26779999999 66543322221110 0 00 013779999999998887 455 6666666
Q ss_pred cCCcceeeEeecC-----CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001403 956 AEELTCLKQWFPI-----SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1001 (1084)
Q Consensus 956 ~~~~~~~~~~~~~-----h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~ 1001 (1084)
.. |+.+..+... .....+.|++.|||..|++....|.+..+|+..
T Consensus 166 pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 166 AD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp TT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 55 3333332211 122367999999999999888899999999884
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.034 Score=59.16 Aligned_cols=232 Identities=10% Similarity=0.013 Sum_probs=123.2
Q ss_pred CEEEEEe---CCeEEEEEcCCceeEE--EEcCCCCCeEEEEEcCCCCcEEEEEeCC----CeEEEEEcCCce--eeeeec
Q 001403 807 AYLFSAS---GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSE--VISKLE 875 (1084)
Q Consensus 807 ~~l~~~s---dg~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~la~g~~d----g~i~iwd~~~~~--~~~~l~ 875 (1084)
..++.|+ ...+.+||..+.+-.. .+......-..+.+ ++++++.|+.+ ..+.+||..+.+ .+..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 3444454 2579999998765332 22222222222332 56788888765 578999998764 222232
Q ss_pred ccccCEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-e-
Q 001403 876 GHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H- 947 (1084)
Q Consensus 876 ~h~~~V~~l~~spd~~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~- 947 (1084)
.....-..+.+ ++++++.|+.+ ..+.+||..+.+-.....+... .....+..-++++++.| .
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~ 159 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ--------RCSHGMVEANGLIYVCGGSL 159 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC--------CBSCEEEEETTEEEEECCEE
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC--------cceeEEEEECCEEEEECCCC
Confidence 21112222222 67888888865 4588999988653332211111 11112222366666664 2
Q ss_pred --------CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeEEecccccc
Q 001403 948 --------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYL 1014 (1084)
Q Consensus 948 --------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~~~~~ 1014 (1084)
-..+.+||..+.+-....... .......+..-+++.++.|+.+ ..+.+||+.+.+.... . .+
T Consensus 160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~---~~ 234 (306)
T 3ii7_A 160 GNNVSGRVLNSCEVYDPATETWTELCPMI-EARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-S---PM 234 (306)
T ss_dssp SCTTTCEECCCEEEEETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEEC-C---CC
T ss_pred CCCCcccccceEEEeCCCCCeEEECCCcc-chhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-C---CC
Confidence 345889999877533221111 1111111222367777777654 3588999998866522 1 12
Q ss_pred CCCCcccceeeeEEEECCCCCCEEEEEeCC-----CcEEEEcCCCCCCCcccCCCC
Q 001403 1015 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPNEPGDTWAVLPPD 1065 (1084)
Q Consensus 1015 ~~~~~~~~v~~~~~~~~p~d~~~l~~~~~d-----g~v~vw~~~~~~~~~~~~~~~ 1065 (1084)
+.. ....+++.. ++..++.|+.+ ..+.+||+. ..+|...++.
T Consensus 235 p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~ 281 (306)
T 3ii7_A 235 PWK-----GVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTE--TDKWVANSKV 281 (306)
T ss_dssp SCC-----BSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETT--TTEEEEEEEE
T ss_pred CCC-----ccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCC--CCeEEeCCCc
Confidence 221 111122222 36788888865 457778774 4568776543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.22 Score=53.92 Aligned_cols=237 Identities=8% Similarity=-0.037 Sum_probs=118.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceee----eecccccEeEEEeecC---CCcEEEEEEeC------C
Q 001403 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE----IDAHVGNVNDLAFSAP---CKQISVITCGD------D 456 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~----l~~h~~~V~~l~~s~d---~~~l~l~s~~~------d 456 (1084)
..+.++|.|||+.|.++...|.|.+++..+ .....+.. ..........++|+|+ +..+++..... .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 567899999999444556678999998543 21111111 1122345789999996 55433332221 2
Q ss_pred CcEEEEECCCC--ce--eeE----ec---cCCCcEEEEeecccCCCcEEEEEec-------------CCeEEEEECCCCC
Q 001403 457 KTIKVWDAVTG--SR--TYS----FE---GHGAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDSLG 512 (1084)
Q Consensus 457 ~~i~vwd~~~g--~~--~~~----~~---~h~~~v~~~~~~~~~~~~~l~s~s~-------------dg~i~iwd~~~~~ 512 (1084)
..|..|++..+ .. ... +. .....-..++|. +||.+.++.+. .|.|.-++.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD--GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC--SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC--CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666666533 11 111 11 011113457774 46655555433 2456666665320
Q ss_pred ------------ceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEe--------cCCCc---------------
Q 001403 513 ------------ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW--------NESEG--------------- 557 (1084)
Q Consensus 513 ------------~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~w--------d~~~~--------------- 557 (1084)
....+...-.....++|.|+...|.++-...++...|.+. ....+
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 1111111223578899999444444443322111223221 11100
Q ss_pred ------eEeeeeeccccccCceEEEEEcC-------CCCEEEEEECCCcEEEEECCCCeEEEEEcC-CCCCCCcceEEEe
Q 001403 558 ------AIKRTYQGLQLQHNSVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-GGGLPENPRICFN 623 (1084)
Q Consensus 558 ------~~~~~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s 623 (1084)
..+..+.. ......+.|.. ++.++++.-..+.|...++..++....... ......+..+++.
T Consensus 256 ~~~~~~~P~~~~~~----~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 256 IVAGTEQPVFYWKD----SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp SCTTSCCCSEEESS----CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred CCCCccCCeEEeCC----CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 00011111 12466677753 456666655677888888776654433221 1112357889999
Q ss_pred cCCCEEEEEE
Q 001403 624 KNGTLLAVIA 633 (1084)
Q Consensus 624 ~~~~~l~~~~ 633 (1084)
|||.++++..
T Consensus 332 pdG~lyv~td 341 (353)
T 2g8s_A 332 PDGYLYVLTD 341 (353)
T ss_dssp TTSCEEEEEC
T ss_pred CCCcEEEEEe
Confidence 9998666543
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.031 Score=59.35 Aligned_cols=225 Identities=12% Similarity=0.063 Sum_probs=118.1
Q ss_pred CeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCC-----CeEEEEEcCCce-----eeeeecccccCEEEE
Q 001403 815 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-----STILIYNARSSE-----VISKLEGHSKRVTGL 884 (1084)
Q Consensus 815 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d-----g~i~iwd~~~~~-----~~~~l~~h~~~V~~l 884 (1084)
..+.+||..+.+-...-..+.......+... ++++++.|+.+ ..+.+||..+.+ .+..+......-.++
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~ 109 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT 109 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence 3588999887653321111111111112223 56788888865 368999988755 222222211222222
Q ss_pred EEcCCCCEEEEEeCCC-----cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eC-----CeEEE
Q 001403 885 VFSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE-----THLAI 953 (1084)
Q Consensus 885 ~~spd~~~l~s~s~dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d-----~~i~v 953 (1084)
.+ ++++++.|+.++ .+.+||..+.+-.....+.. .. ....+..-++++++.| .+ ..+.+
T Consensus 110 ~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 179 (301)
T 2vpj_A 110 TL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT--AR------EGAGLVVASGVIYCLGGYDGLNILNSVEK 179 (301)
T ss_dssp EE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS--CC------BSCEEEEETTEEEEECCBCSSCBCCCEEE
T ss_pred EE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC--Cc------ccceEEEECCEEEEECCCCCCcccceEEE
Confidence 22 677888877543 58899988865433222211 11 1112222367766664 22 46899
Q ss_pred EEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeEEeccccccCCCCcccceeeeEE
Q 001403 954 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAI 1028 (1084)
Q Consensus 954 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1028 (1084)
||..+.+-....... .......+...+++.++.|+.+ ..+.+||+.+.+....-. ++.. ... .++
T Consensus 180 ~d~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~----~p~~----r~~-~~~ 249 (301)
T 2vpj_A 180 YDPHTGHWTNVTPMA-TKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS----MTTP----RCY-VGA 249 (301)
T ss_dssp EETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC----CSSC----CBS-CEE
T ss_pred EeCCCCcEEeCCCCC-cccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC----CCCc----ccc-eeE
Confidence 998876543321111 1111111222367777777764 468999999887653211 1221 111 122
Q ss_pred EECCCCCCEEEEEeCCC-----cEEEEcCCCCCCCcccCCC
Q 001403 1029 AAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPP 1064 (1084)
Q Consensus 1029 ~~~p~d~~~l~~~~~dg-----~v~vw~~~~~~~~~~~~~~ 1064 (1084)
+.. ++..++.|+.++ .+.+||+. ..+|...++
T Consensus 250 ~~~--~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~ 286 (301)
T 2vpj_A 250 TVL--RGRLYAIAGYDGNSLLSSIECYDPI--IDSWEVVTS 286 (301)
T ss_dssp EEE--TTEEEEECCBCSSSBEEEEEEEETT--TTEEEEEEE
T ss_pred EEE--CCEEEEEcCcCCCcccccEEEEcCC--CCeEEEcCC
Confidence 222 367888887764 56777774 456876544
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.19 Score=54.38 Aligned_cols=230 Identities=15% Similarity=0.126 Sum_probs=117.2
Q ss_pred CCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccccee-eeecCCCCCeEEEEEcCC---CCEEEEEeC-
Q 001403 334 SSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKT-ALVRDPGVSVNRVVWSPD---GSLLGVAYS- 408 (1084)
Q Consensus 334 ~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~-~~~~~h~~~V~~v~fspd---g~~las~~~- 408 (1084)
-...+.++|.|||+++++- .+ +.|.++|. ++...+.. .+..........++|+|+ +.+|.++..
T Consensus 28 l~~P~~ia~~pdG~l~V~e-~~---------g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~ 96 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTE-RP---------GRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASY 96 (354)
T ss_dssp CSCEEEEEEEETTEEEEEE-TT---------TEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CCCCeEEEEcCCCeEEEEe-CC---------CEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEec
Confidence 3478999999999977773 12 67777763 22211110 011222356889999998 555554433
Q ss_pred ---C----CEEEEEEccCCc-cc---ccee-eee-cccccEeEEEeecCCCcEEEEEEeC-------------CCcEEEE
Q 001403 409 ---K----HIVQLYAYHGGS-DA---RQQL-EID-AHVGNVNDLAFSAPCKQISVITCGD-------------DKTIKVW 462 (1084)
Q Consensus 409 ---d----g~v~iwd~~~~~-~~---~~~~-~l~-~h~~~V~~l~~s~d~~~l~l~s~~~-------------d~~i~vw 462 (1084)
+ ..|..|+...+. .+ +.+. .+. +.......++|.|||. +.++.+. .+.|.-.
T Consensus 97 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~~G~I~ri 174 (354)
T 3a9g_A 97 FAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSLAGKILRV 174 (354)
T ss_dssp ECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCCSSEEEEE
T ss_pred cCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCCCeEEEEE
Confidence 3 568888876541 11 1110 111 1111246799999997 4555332 2455555
Q ss_pred ECCCCc----------eeeEeccCCCcEEEEeecccCCCcEEEEEecCC---eEEEEECCCCC-----------------
Q 001403 463 DAVTGS----------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLG----------------- 512 (1084)
Q Consensus 463 d~~~g~----------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~----------------- 512 (1084)
+.. |+ .+. ..+|.. ...++|++. ++.++++-...+ .|.+. ..+.
T Consensus 175 ~~d-G~~p~~npf~~~~i~-a~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~ 248 (354)
T 3a9g_A 175 DEE-GRPPADNPFPNSPIW-SYGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFV 248 (354)
T ss_dssp CTT-SCCCTTSSSTTCCEE-EECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSC
T ss_pred cCC-CCCCCCCCCCCCcEE-EEccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCc
Confidence 543 22 111 123333 345677542 344444432221 13322 1111
Q ss_pred -ceEeecCCCCeEEEEEEc-------CCCCEEEEEeeCCCCCeeEEEecCCCc-eEe--eee-eccccccCceEEEEEcC
Q 001403 513 -ARVDYDAPGLGCTRMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEG-AIK--RTY-QGLQLQHNSVSVVHFDT 580 (1084)
Q Consensus 513 -~~~~~~~~~~~i~~~~~s-------~d~~~l~~~~~~~~~~~~i~~wd~~~~-~~~--~~~-~~~~~~~~~v~~~~~s~ 580 (1084)
....+.........++|. .+|.++++... .+.|...++... +.. ..+ .+. ...+..+++.|
T Consensus 249 ~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----~~~v~~~~~~~~g~~~~~~~~~~~~---~~rp~~v~~~p 321 (354)
T 3a9g_A 249 DPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR----GSMLAAVNFGDNMEVRKISTFFKNV---FGRLRDVVIDD 321 (354)
T ss_dssp CCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT----TTEEEEEEECGGGCEEEEEEECTTT---SCCEEEEEECT
T ss_pred CCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC----CCEEEEEEECCCCcccceeeeccCC---CCCeeEEEECC
Confidence 112221223356788884 46655554332 445777777643 322 122 121 25688999999
Q ss_pred CCCEEEEEE
Q 001403 581 AKDQILAAG 589 (1084)
Q Consensus 581 ~~~~l~~~~ 589 (1084)
||...++..
T Consensus 322 DG~lyv~~~ 330 (354)
T 3a9g_A 322 DGGILISTS 330 (354)
T ss_dssp TSCEEEEEC
T ss_pred CCcEEEEEe
Confidence 987666553
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.069 Score=56.56 Aligned_cols=223 Identities=11% Similarity=0.063 Sum_probs=117.1
Q ss_pred CeEEEEEcCCceeEEEEcCCCCCe-EEEEEcCCCCcEEEEEeCCC-----eEEEEEcCCce--eeeeecccccCEEEEEE
Q 001403 815 GVISLYIVMTFKTILTIMPPSPTA-TSLAFNPHDNNVIAIGMDDS-----TILIYNARSSE--VISKLEGHSKRVTGLVF 886 (1084)
Q Consensus 815 g~i~vwd~~~~~~~~~~~~~~~~i-~~l~~s~~d~~~la~g~~dg-----~i~iwd~~~~~--~~~~l~~h~~~V~~l~~ 886 (1084)
..+.+||..+.+-...-..+.... .+++. - ++++++.|+.++ .+.+||..+.+ .+..+......-..+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE
Confidence 458899988765332211111111 12222 2 567888887553 68899988764 22222221112222222
Q ss_pred cCCCCEEEEEeCCC-----cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-e-------CCeEEE
Q 001403 887 SDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-------ETHLAI 953 (1084)
Q Consensus 887 spd~~~l~s~s~dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~-------d~~i~v 953 (1084)
++++++.|+.++ .+.+||+.+.+-.....+... .....+..-++++++.| . -..+.+
T Consensus 108 --~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 177 (302)
T 2xn4_A 108 --NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTR--------RSSVGVGVVGGLLYAVGGYDVASRQCLSTVEC 177 (302)
T ss_dssp --TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSC--------CBSCEEEEETTEEEEECCEETTTTEECCCEEE
T ss_pred --CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCc--------ccCceEEEECCEEEEEeCCCCCCCccccEEEE
Confidence 678888888664 578889887653332221111 11111222366666663 2 235889
Q ss_pred EEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeEEeccccccCCCCcccceeeeEE
Q 001403 954 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAI 1028 (1084)
Q Consensus 954 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1028 (1084)
||..+.+-...........-.++ ...+++.++.|+.+ ..+.+||..+.+....-. ++.. ... .++
T Consensus 178 yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~~~~----r~~-~~~ 247 (302)
T 2xn4_A 178 YNATTNEWTYIAEMSTRRSGAGV-GVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD----MNMC----RRN-AGV 247 (302)
T ss_dssp EETTTTEEEEECCCSSCCBSCEE-EEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC----CSSC----CBS-CEE
T ss_pred EeCCCCcEEECCCCccccccccE-EEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC----CCCc----ccc-CeE
Confidence 99887653322111111111122 22367778887765 368899999887653211 1211 011 122
Q ss_pred EECCCCCCEEEEEeCCC-----cEEEEcCCCCCCCcccCC
Q 001403 1029 AAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLP 1063 (1084)
Q Consensus 1029 ~~~p~d~~~l~~~~~dg-----~v~vw~~~~~~~~~~~~~ 1063 (1084)
+.. ++..++.|+.++ .+.+||+.. .+|...+
T Consensus 248 ~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~ 283 (302)
T 2xn4_A 248 CAV--NGLLYVVGGDDGSCNLASVEYYNPTT--DKWTVVS 283 (302)
T ss_dssp EEE--TTEEEEECCBCSSSBCCCEEEEETTT--TEEEECS
T ss_pred EEE--CCEEEEECCcCCCcccccEEEEcCCC--CeEEECC
Confidence 222 367888888765 488888854 4687765
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.054 Score=57.40 Aligned_cols=192 Identities=12% Similarity=0.052 Sum_probs=99.6
Q ss_pred CCCcEEEEEEeCC-----CcEEEEECCCCceeeE--eccCCCcEEEEeecccCCCcEEEEEecCC-----eEEEEECCCC
Q 001403 444 PCKQISVITCGDD-----KTIKVWDAVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSL 511 (1084)
Q Consensus 444 d~~~l~l~s~~~d-----~~i~vwd~~~g~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~ 511 (1084)
+++ +++.|+.+ ..+.+||..+.+-... +......-..+.+ ++.+++.|+.++ .+.+||+.+.
T Consensus 61 ~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~ 134 (302)
T 2xn4_A 61 AGL--VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSN 134 (302)
T ss_dssp TTE--EEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTT
T ss_pred CCE--EEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCC
Confidence 555 56666644 3588999887753321 1111111122222 446777777654 4677777654
Q ss_pred CceEeecCCCCeE-EEEEEcCCCCEEEEEeeCCCC---CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEE
Q 001403 512 GARVDYDAPGLGC-TRMAYSANGRRLFSCGTSKEG---ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 587 (1084)
Q Consensus 512 ~~~~~~~~~~~~i-~~~~~s~d~~~l~~~~~~~~~---~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 587 (1084)
+-...-..+.... .+++ .-+++.++.++.+... ...+.+||+.+.+-...-.... .......+.+ ++..++.
T Consensus 135 ~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~ 210 (302)
T 2xn4_A 135 EWFHVAPMNTRRSSVGVG-VVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL--NNLLYAV 210 (302)
T ss_dssp EEEEECCCSSCCBSCEEE-EETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEE
T ss_pred eEeecCCCCCcccCceEE-EECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE--CCEEEEE
Confidence 4222211111111 1122 2366677776654332 3458899998876543321111 1122222223 5666677
Q ss_pred EECC-----CcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCC-----eEEEEEcCCCC
Q 001403 588 AGDD-----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN-----RIKILETPESN 647 (1084)
Q Consensus 588 ~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~~ 647 (1084)
|+.+ ..+.+||..+.+....-..... .....+..-++++++.|+.++ .+.+||..+.+
T Consensus 211 GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 211 GGHDGPLVRKSVEVYDPTTNAWRQVADMNMC--RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CCBSSSSBCCCEEEEETTTTEEEEECCCSSC--CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCCCCcccceEEEEeCCCCCEeeCCCCCCc--cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 7654 4689999998876654332221 122222333677777777543 47888887663
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.051 Score=57.78 Aligned_cols=232 Identities=8% Similarity=-0.016 Sum_probs=116.7
Q ss_pred EEEEEeC--CCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC----CcEEEEECCCCceeeE--e
Q 001403 402 LLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYS--F 473 (1084)
Q Consensus 402 ~las~~~--dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d----~~i~vwd~~~g~~~~~--~ 473 (1084)
.++.|+. ...+.+||..+++-.. ...+......-..+. -+++ +++.|+.+ ..+.++|+.+++-... +
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTD-IRCPFEKRRDAACVF--WDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEE-CCCCSCCCBSCEEEE--ETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred EEEEeCCCCCceEEEecCCCCCEec-CCCCCcccceeEEEE--ECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence 4455543 3458889988764221 111111111111222 2555 56667654 5788999888754322 2
Q ss_pred ccCCCcEEEEeecccCCCcEEEEEecC------CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCC--
Q 001403 474 EGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-- 545 (1084)
Q Consensus 474 ~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~-- 545 (1084)
......-..+.+ ++.+++.|+.+ ..+.+||..+..-...-..+.......+..-+++.++.++.+...
T Consensus 89 p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 164 (306)
T 3ii7_A 89 PTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVS 164 (306)
T ss_dssp SSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTT
T ss_pred CccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCc
Confidence 111111122222 44677777765 458888887654322211111111111122366677776654332
Q ss_pred ---CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeEEEEEcCCCCCCCc
Q 001403 546 ---ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPEN 617 (1084)
Q Consensus 546 ---~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v 617 (1084)
...+.+||+.+.+-...-.... .......+.+ +++.++.|+.+ ..+.+||..+.+....-...... .
T Consensus 165 ~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~ 239 (306)
T 3ii7_A 165 GRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKG--V 239 (306)
T ss_dssp CEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCB--S
T ss_pred ccccceEEEeCCCCCeEEECCCccc-hhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCc--c
Confidence 3558899998876543322111 1112222222 55666666543 46889999887765443222211 1
Q ss_pred ceEEEecCCCEEEEEECC-----CeEEEEEcCCCC
Q 001403 618 PRICFNKNGTLLAVIANE-----NRIKILETPESN 647 (1084)
Q Consensus 618 ~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 647 (1084)
...+..-++++++.|+.+ ..+.+||..+.+
T Consensus 240 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 240 TVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp CCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred ceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 112222267788888743 568888887763
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.1 Score=55.63 Aligned_cols=229 Identities=10% Similarity=0.076 Sum_probs=120.4
Q ss_pred eCCeEEEEEcCCceeEE-EEcCCCCCeEEEEEcCCCCcEEEEEeC-----C------CeEEEEEcCCcee--eeeecccc
Q 001403 813 SGGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD-----D------STILIYNARSSEV--ISKLEGHS 878 (1084)
Q Consensus 813 sdg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~la~g~~-----d------g~i~iwd~~~~~~--~~~l~~h~ 878 (1084)
+...+.+||..+.+-.. .+..+.......+... ++++++.|+. . ..+.+||..+.+- +..+....
T Consensus 11 GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 89 (315)
T 4asc_A 11 SEEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR 89 (315)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE
T ss_pred cCCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch
Confidence 34779999998876433 2222223333334444 6778888874 1 1378889887642 22222111
Q ss_pred cCEEEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-e-C
Q 001403 879 KRVTGLVFSDALNILVSSGGD--------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E 948 (1084)
Q Consensus 879 ~~V~~l~~spd~~~l~s~s~d--------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~-d 948 (1084)
..-..+.+ ++++++.||.+ ..+.+||..+.+-.....+... .....+..-++++++.| . +
T Consensus 90 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~~ 159 (315)
T 4asc_A 90 CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYV--------VYGHTVLSHMDLVYVIGGKGS 159 (315)
T ss_dssp ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSC--------CBSCEEEEETTEEEEECCBCT
T ss_pred hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCc--------ccceeEEEECCEEEEEeCCCC
Confidence 11122222 67777777743 4588999988653332211111 11122233566666664 3 2
Q ss_pred -----CeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCC-----cEEEEEcCCCceeEEeccccccCCCC
Q 001403 949 -----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG-----TLSIHEASNLEVQCRILSTAYLRPTT 1018 (1084)
Q Consensus 949 -----~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~ 1018 (1084)
..+.+||..+.+-....... .......+..-+++.++.|+.++ .+.+||+.+.+....-. .+..
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~- 233 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQ-TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQE- 233 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSC-
T ss_pred CCcccceEEEEeCCCCeEEECCCCC-CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCc-
Confidence 36899998876532211111 11111112233777888887664 48889999886653211 2221
Q ss_pred cccceeeeEEEECCCCCCEEEEEeCCC--------------cEEEEcCCCCCCCcccCCCCC
Q 001403 1019 SCLHVYPHAIAAHPLKPTQFAVGLTNG--------------EVYVIEPNEPGDTWAVLPPDE 1066 (1084)
Q Consensus 1019 ~~~~v~~~~~~~~p~d~~~l~~~~~dg--------------~v~vw~~~~~~~~~~~~~~~~ 1066 (1084)
....+++.. ++..++.|+.++ .+.+||+ ...+|...+|..
T Consensus 234 ----r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~ 287 (315)
T 4asc_A 234 ----RSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNE--EEKKWEGVLREI 287 (315)
T ss_dssp ----CBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET--TTTEEEEEESCS
T ss_pred ----ccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecC--CCChhhhhccCC
Confidence 111122222 367888888643 3566776 445688765443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.33 Score=51.92 Aligned_cols=198 Identities=12% Similarity=0.089 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCcEEEEE------------eCCCeEEEEEcCC--ceee-eeecc-----cccCEEEEEEcC--CCC-EEE
Q 001403 838 ATSLAFNPHDNNVIAIG------------MDDSTILIYNARS--SEVI-SKLEG-----HSKRVTGLVFSD--ALN-ILV 894 (1084)
Q Consensus 838 i~~l~~s~~d~~~la~g------------~~dg~i~iwd~~~--~~~~-~~l~~-----h~~~V~~l~~sp--d~~-~l~ 894 (1084)
.-.+++.| +|..+++. ..+|.|.++|..+ ++.. -.+.+ ..-....+.+.+ ++. +|.
T Consensus 52 ~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34556666 56444433 2689999999874 2211 12222 234667777766 454 343
Q ss_pred EE-eC--CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEe----C--------------CeEEE
Q 001403 895 SS-GG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----E--------------THLAI 953 (1084)
Q Consensus 895 s~-s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~----d--------------~~i~v 953 (1084)
.+ .. +.+|.+|+++.+.... ..+....+... .....+++.++|.+.++.. | +.|+-
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~-~~~~~~~g~~~--~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSL-LHLKTIRHKLL--PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEE-EEEEEECCTTC--SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEECCCCCCeEEEEEEECCCCEE-EEEeccccCCC--CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 33 22 4678888877643222 23333333221 3678999999999887742 1 34554
Q ss_pred EEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCC-CceeEEeccccccCCCCcccceeeeEEEEC
Q 001403 954 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAH 1031 (1084)
Q Consensus 954 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1031 (1084)
+|. ++. ..... .-..-..++|||||++|+.+. ..+.|..|++.. |.+...-.. ..+ -.|=.++.+
T Consensus 208 ~d~--~~~-~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~-------g~PDGi~vD 274 (355)
T 3sre_A 208 YSP--NDV-RVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFD-------TLVDNISVD 274 (355)
T ss_dssp ECT--TCC-EEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECS-------SEEEEEEEC
T ss_pred EEC--CeE-EEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCC-------CCCceEEEe
Confidence 544 332 22222 234678999999998877665 467899999864 443221110 111 123346677
Q ss_pred CCCCCEEEEEeCC-CcEEEEcC
Q 001403 1032 PLKPTQFAVGLTN-GEVYVIEP 1052 (1084)
Q Consensus 1032 p~d~~~l~~~~~d-g~v~vw~~ 1052 (1084)
+++|++.+++..+ +.|..|+.
T Consensus 275 ~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 275 PVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp TTTCCEEEEEESCHHHHHSCCT
T ss_pred CCCCcEEEEecCCceEEEEECC
Confidence 6337777766544 34444443
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.4 Score=53.78 Aligned_cols=103 Identities=14% Similarity=0.137 Sum_probs=63.0
Q ss_pred CccEEEecCCCCEEEEEeC-CeEEEEEcCCceeE--EEEcC------CCCCeEEEEEcCC---CCcEEEEEeC-------
Q 001403 796 AVPCFALSKNDAYLFSASG-GVISLYIVMTFKTI--LTIMP------PSPTATSLAFNPH---DNNVIAIGMD------- 856 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~sd-g~i~vwd~~~~~~~--~~~~~------~~~~i~~l~~s~~---d~~~la~g~~------- 856 (1084)
....++|.|||+++++-.. +.|.+++..+++.. ..+.. .......++|+|+ ++.+.++-+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 4569999999998887766 47888886655432 22321 2356779999994 3444443332
Q ss_pred -----CCeEEEEEcCCc-------eee-eeecc-cccCEEEEEEcCCCCEEEEEeC
Q 001403 857 -----DSTILIYNARSS-------EVI-SKLEG-HSKRVTGLVFSDALNILVSSGG 898 (1084)
Q Consensus 857 -----dg~i~iwd~~~~-------~~~-~~l~~-h~~~V~~l~~spd~~~l~s~s~ 898 (1084)
...|.-|+...+ +.+ ..+.. .......|+|.|||.+.++.+.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665432 112 11221 1123688999999998887664
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.093 Score=55.75 Aligned_cols=234 Identities=11% Similarity=0.067 Sum_probs=121.9
Q ss_pred cCCCCEEEEEe-----CCeEEEEEcCCceeEEE--EcCCCCCeEEEEEcCCCCcEEEEEeC----C-----CeEEEEEcC
Q 001403 803 SKNDAYLFSAS-----GGVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMD----D-----STILIYNAR 866 (1084)
Q Consensus 803 s~dg~~l~~~s-----dg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~la~g~~----d-----g~i~iwd~~ 866 (1084)
.-++..++.|+ -..+.+||..+.+-... +....... +++. - ++++++.|+. + ..+.+||..
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 33566666665 14689999887653322 11111111 2222 2 5677777776 2 368899988
Q ss_pred Cce--eeeeecccccCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccC
Q 001403 867 SSE--VISKLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 939 (1084)
Q Consensus 867 ~~~--~~~~l~~h~~~V~~l~~spd~~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 939 (1084)
+.+ .+..+......-..+.+ ++++++.|+.+ ..+.+||..+.+-.....+... .. ....+.+ +
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~----~~~~~~~--~ 168 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR--RI----GVGVAVL--N 168 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC--CB----SCEEEEE--T
T ss_pred CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcc--cc----ceEEEEE--C
Confidence 764 22222221122222233 67788877644 3588999988653332211111 11 1122222 6
Q ss_pred CCEEEEE-eC-----CeEEEEEcCCcceeeEeecCC-CCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeEE
Q 001403 940 QTRFLLV-HE-----THLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCR 1007 (1084)
Q Consensus 940 g~~la~~-~d-----~~i~vwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~~~d-----g~i~vwd~~~~~~~~~ 1007 (1084)
+++++.| .+ ..+.+||..+.+-........ ...-..+. -+++.++.|+.+ ..+.+||+.+.+....
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 6666664 22 458999988765322111111 11112222 267777777765 5699999998866522
Q ss_pred eccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCC-----cEEEEcCCCCCCCcccCCC
Q 001403 1008 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPP 1064 (1084)
Q Consensus 1008 ~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg-----~v~vw~~~~~~~~~~~~~~ 1064 (1084)
- .++.. ....+++.. ++..++.|+.++ .+.+||+. ..+|...++
T Consensus 247 ~----~~p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~ 295 (308)
T 1zgk_A 247 A----PMKHR-----RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPD--TDTWSEVTR 295 (308)
T ss_dssp C----CCSSC-----CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETT--TTEEEEEEE
T ss_pred C----CCCCC-----ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCC--CCEEeecCC
Confidence 1 12221 111122222 367888887654 46778774 456876543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.12 Score=64.10 Aligned_cols=234 Identities=13% Similarity=0.117 Sum_probs=144.7
Q ss_pred EEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ceeeeeeccc
Q 001403 799 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH 877 (1084)
Q Consensus 799 ~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~-~~~~~~l~~h 877 (1084)
+.-.+|..+.+|.-.+.++.|||+++.+.+....- ...|.--.|-. .+.|+..+ +..|+-|++.. ..+++.+.-|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 44567888888888888999999998877776653 34577777764 34566555 56799999974 3455555555
Q ss_pred ----ccCEEEEEEcCCCCEEEEEe-------CCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEE---ccCCCEE
Q 001403 878 ----SKRVTGLVFSDALNILVSSG-------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF---HKDQTRF 943 (1084)
Q Consensus 878 ----~~~V~~l~~spd~~~l~s~s-------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~dg~~l 943 (1084)
...|..-..+++.++++..| -.|.+.+|+++.+. -+..+||.. ....+.. .+....+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~---~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA---SFAQFKMEGNAEESTLF 216 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHh---hhheeccCCCCCCceEE
Confidence 45788888899999988654 34788999988743 344555543 1112221 1122333
Q ss_pred EEEe----CCeEEEEEcCCc---cee------eEeecC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEe
Q 001403 944 LLVH----ETHLAIYEAEEL---TCL------KQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1008 (1084)
Q Consensus 944 a~~~----d~~i~vwd~~~~---~~~------~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~ 1008 (1084)
+.+. .++++|.++... ... ...++. -..-..++..|+.-..+...+.-|.|.++|+.+|.++.+-
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 3332 368888888543 111 011111 0222335666776667777788999999999999887443
Q ss_pred ccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 1009 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1009 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
. -+++.|+.. +.++. ..-++.....|.|.--.+.+..
T Consensus 297 r--------is~~~iF~~--~~~~~-~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 297 R--------ISGETIFVT--APHEA-TAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred c--------ccCCceEEe--ccCCC-CCceEEEcCCceEEEEEEccch
Confidence 3 123445532 22221 2345555588888877776554
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.13 Score=54.91 Aligned_cols=225 Identities=10% Similarity=-0.022 Sum_probs=110.4
Q ss_pred CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC-----C------CcEEEEECCCCceeeEeccCCC
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----D------KTIKVWDAVTGSRTYSFEGHGA 478 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-----d------~~i~vwd~~~g~~~~~~~~h~~ 478 (1084)
..+.+||..+++-.. ..+..........+...+++ +++.|+. . ..+.+||..+++-.. +..-..
T Consensus 13 ~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~ 87 (315)
T 4asc_A 13 EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPPLPS 87 (315)
T ss_dssp TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCCBSS
T ss_pred CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCCCCc
Confidence 468899998875321 12221112222333344565 5566662 1 127788988775422 111111
Q ss_pred cEE--EEeecccCCCcEEEEEecC--------CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCC--CCC
Q 001403 479 PVY--SLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK--EGE 546 (1084)
Q Consensus 479 ~v~--~~~~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~--~~~ 546 (1084)
+-. +++. . ++.+++.|+.+ ..+.+||..+.+-...-..+.......+..-+++.++.++... ...
T Consensus 88 ~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 164 (315)
T 4asc_A 88 PRCLFGLGE--A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL 164 (315)
T ss_dssp CEESCEEEE--E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBC
T ss_pred chhceeEEE--E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCccc
Confidence 111 1111 1 44566666632 3478888876532221111111111112224566666666421 112
Q ss_pred eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCC-----cEEEEECCCCeEEEEEcCCCCCCCcceEE
Q 001403 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGGGLPENPRIC 621 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 621 (1084)
..+.+||+.+.+-...-.... .......+.+ +++.++.|+.++ .+.+||..+.+....-..... .....+
T Consensus 165 ~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~ 239 (315)
T 4asc_A 165 NKMCVYDPKKFEWKELAPMQT-ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE--RSSLSL 239 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC--CBSCEE
T ss_pred ceEEEEeCCCCeEEECCCCCC-chhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc--ccceeE
Confidence 458999988775443221111 1112222222 566777777544 588999988876655332222 122222
Q ss_pred EecCCCEEEEEECC--------------CeEEEEEcCCCC
Q 001403 622 FNKNGTLLAVIANE--------------NRIKILETPESN 647 (1084)
Q Consensus 622 ~s~~~~~l~~~~~d--------------g~i~iwd~~~~~ 647 (1084)
..-++++++.|+.+ ..+.+||..+.+
T Consensus 240 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 240 VSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred EEECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 23367777777753 236677877653
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.52 Score=52.34 Aligned_cols=115 Identities=16% Similarity=0.103 Sum_probs=78.5
Q ss_pred CCCccEEEecCCCCEEEEEe--CCeEEEEEcCCcee-------------EEEEcCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 001403 794 QEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT-------------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 858 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~-------------~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg 858 (1084)
......+.++|||+++++++ +.++.++|++.... ..... ..-.....+|.+ +|....+-.-|.
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidS 399 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDS 399 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTT
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecc
Confidence 34556788999999999998 68899999874211 11222 344678899999 787777777999
Q ss_pred eEEEEEcCCc----------eeeeeecccccCEEEEEE------cCCCCEEEEEe---CCCc----------EEEEeCCC
Q 001403 859 TILIYNARSS----------EVISKLEGHSKRVTGLVF------SDALNILVSSG---GDAQ----------IFVWDVDG 909 (1084)
Q Consensus 859 ~i~iwd~~~~----------~~~~~l~~h~~~V~~l~~------spd~~~l~s~s---~dg~----------I~iwd~~~ 909 (1084)
.|.-|++... ..+.++.-|-. +-.+.- .|||++|++.. .|+. -.+.|++.
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG 478 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG 478 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC
Confidence 9999999763 34555554543 222333 47999999874 4543 36677765
Q ss_pred Cc
Q 001403 910 WG 911 (1084)
Q Consensus 910 ~~ 911 (1084)
.+
T Consensus 479 dk 480 (638)
T 3sbq_A 479 DE 480 (638)
T ss_dssp SS
T ss_pred Cc
Confidence 44
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.41 E-value=1.3 Score=47.14 Aligned_cols=100 Identities=11% Similarity=0.123 Sum_probs=58.5
Q ss_pred CccEEEecCCCCEEEEEe--CCeEEEEEcCCcee------------------EEEEcCCCCCeEEEEEcCCCCcEEEEEe
Q 001403 796 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT------------------ILTIMPPSPTATSLAFNPHDNNVIAIGM 855 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~------------------~~~~~~~~~~i~~l~~s~~d~~~la~g~ 855 (1084)
....++|+|+|.+.++-. ++.-.|--+..+.. +..+..+......++|.. +.++...-
T Consensus 203 Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l 280 (347)
T 3das_A 203 NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGL 280 (347)
T ss_dssp BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEES
T ss_pred CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeeccc
Confidence 456789999887666543 22222322222211 122222223556778874 55666666
Q ss_pred CCCeEEEEEcCCcee----eeeecccccCEEEEEEcCCCCEEEEEe
Q 001403 856 DDSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNILVSSG 897 (1084)
Q Consensus 856 ~dg~i~iwd~~~~~~----~~~l~~h~~~V~~l~~spd~~~l~s~s 897 (1084)
..+.|....+..+.. ...+.+..+.+..++..|||.++++.+
T Consensus 281 ~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 281 RGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 666777777765432 223444457899999999998877654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.032 Score=54.09 Aligned_cols=142 Identities=7% Similarity=-0.056 Sum_probs=81.8
Q ss_pred CcEEEEEeCCCeEEEEEcCCcee-----eeeeccc--ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee----e
Q 001403 848 NNVIAIGMDDSTILIYNARSSEV-----ISKLEGH--SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC----R 916 (1084)
Q Consensus 848 ~~~la~g~~dg~i~iwd~~~~~~-----~~~l~~h--~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~----~ 916 (1084)
..+|++..+| +|+.=...++.. ..+-.++ =..+..++|+|||.+.+. .+|.+.--+..+...... .
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 4566666777 666655444431 1111222 236779999999997777 667655555433221110 0
Q ss_pred eeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceee-----Eeec-CCCCCEEEEEEccCCCEEEEEeC
Q 001403 917 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-----QWFP-ISSVPISQATFSCDCRMVFTSFV 990 (1084)
Q Consensus 917 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~-----~~~~-~h~~~v~~l~fs~dg~~l~t~~~ 990 (1084)
.+-.. +-. .-..+.|.|+|.+.++ .||.|+-++-.+..... .... .-=..+..|.|.|+|.+.++.
T Consensus 81 ~IG~~-Gw~----~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-- 152 (236)
T 1tl2_A 81 KIGNG-GWN----QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-- 152 (236)
T ss_dssp EEECS-CGG----GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--
T ss_pred Eeccc-ccc----cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--
Confidence 11000 000 1368999999999999 78999888765422211 1110 012467999999999877765
Q ss_pred CCcEEEEEcC
Q 001403 991 DGTLSIHEAS 1000 (1084)
Q Consensus 991 dg~i~vwd~~ 1000 (1084)
|+.+.-+...
T Consensus 153 dg~lyr~~~P 162 (236)
T 1tl2_A 153 GQQFYKALPP 162 (236)
T ss_dssp TTEEEEECCC
T ss_pred CCcEEecCCC
Confidence 8876544444
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.049 Score=52.79 Aligned_cols=144 Identities=9% Similarity=0.013 Sum_probs=85.1
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccC--------EEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001403 837 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR--------VTGLVFSDALNILVSSGGDAQIFVWDVD 908 (1084)
Q Consensus 837 ~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~--------V~~l~~spd~~~l~s~s~dg~I~iwd~~ 908 (1084)
.+..++|+| ++.+.++ .+|.++-.+..+++.. .+.+-... -.++.|.|+|.+.++ .||.|.-++-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 567999999 8987777 6787777776552211 11111112 478999999999888 56988777753
Q ss_pred CCceeeee--eeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCccee-----eEeec-CCCCCEEEEEEcc
Q 001403 909 GWGIQTCR--SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL-----KQWFP-ISSVPISQATFSC 980 (1084)
Q Consensus 909 ~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~-----~~~~~-~h~~~v~~l~fs~ 980 (1084)
+....... ......+.-. .+..+.|.|+|.+-|+. ++.++-+...++... ..... +.-..-.-+.|++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~---~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~ 191 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWS---GFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS 191 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGG---GEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred cCCCCceeccccEeccCCCC---ceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence 32211100 0000011111 47899999999999999 888665544432211 11111 2223444567888
Q ss_pred CCCEEEEEeCCC
Q 001403 981 DCRMVFTSFVDG 992 (1084)
Q Consensus 981 dg~~l~t~~~dg 992 (1084)
+|...++. +|
T Consensus 192 ~G~l~~v~--~g 201 (236)
T 1tl2_A 192 VGTLFGVQ--GG 201 (236)
T ss_dssp TSCEEEEE--TT
T ss_pred CCcEEEEe--CC
Confidence 88777665 66
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.12 Score=54.83 Aligned_cols=234 Identities=7% Similarity=-0.018 Sum_probs=115.7
Q ss_pred CCCCEEEEEeCC----CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC----C-----CcEEEEEC
Q 001403 398 PDGSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----D-----KTIKVWDA 464 (1084)
Q Consensus 398 pdg~~las~~~d----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~----d-----~~i~vwd~ 464 (1084)
-++..++.|+.+ ..+.+||..+++-... ..+......- +++. -+++ +++.|+. + ..+.++|+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~-~~~~-~~~~--lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL-ADLQVPRSGL-AGCV-VGGL--LYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEEC-CCCSSCCBSC-EEEE-ETTE--EEEECCEEEETTEEEECCCEEEEET
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeEC-CCCCcccccc-eEEE-ECCE--EEEECCCcCCCCCCeecceEEEECC
Confidence 356666666632 3588888887642211 1111111111 1222 2455 5555654 2 46889998
Q ss_pred CCCceee--EeccCCCcEEEEeecccCCCcEEEEEecC-----CeEEEEECCCCCceEeecCC--CCeEEEEEEcCCCCE
Q 001403 465 VTGSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRR 535 (1084)
Q Consensus 465 ~~g~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~d~~~ 535 (1084)
.+.+-.. .+......-..+.+ ++.+++.|+.+ ..+.+||..+.+-......+ ......+.+ +++.
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 171 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLL 171 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred CCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEE
Confidence 8775322 11111111122222 44666666644 35778887764322211111 111122222 6666
Q ss_pred EEEEeeCCCC-CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeEEEEEc
Q 001403 536 LFSCGTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTID 609 (1084)
Q Consensus 536 l~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~ 609 (1084)
++.++.++.. ...+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||+.+.+....-.
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 248 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 248 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC-ccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC
Confidence 6776654322 3458899988776543221111 1122223333 56666667654 569999999877654432
Q ss_pred CCCCCCCcceEEEecCCCEEEEEECC-----CeEEEEEcCCCC
Q 001403 610 AGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESN 647 (1084)
Q Consensus 610 ~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 647 (1084)
.... .....+..-++++++.|+.+ ..+.+||..+.+
T Consensus 249 ~p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 249 MKHR--RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CSSC--CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCC--ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 2211 11222222367777777643 457788877653
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.32 Score=52.42 Aligned_cols=160 Identities=11% Similarity=0.038 Sum_probs=95.1
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCC--CCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcce---
Q 001403 887 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD--GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC--- 961 (1084)
Q Consensus 887 spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~--- 961 (1084)
+.+|..++.+ .++.||.-++..+. .-+.+.... .. ..+..+..||+|.+||..++..|.|..+..+..
T Consensus 29 ~~n~t~i~~a-~~n~iR~~~i~~~~--~Yk~L~~~~~i~f----~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 29 SQNGTRIVFI-QDNIIRWYNVLTDS--LYHSLNFSRHLVL----DDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVE 101 (452)
T ss_dssp ETTTTEEEEE-ETTEEEEEETTTCS--SCEEEECTTTCCC----CTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCC
T ss_pred EcCCCEEEEE-ECCEEEEEECCCCC--cceEEecCccccc----CceeEEEECCCCCEEEEecCCeEEEEEecCccccCc
Confidence 3455556554 34667777776432 122333321 11 147889999999999999999999999873321
Q ss_pred ---------eeEeecC-----CCCCEEEEEEcc---CCCEEEEEeCCCcEEEEEcCCCcee-EEeccc-cccCCCCcccc
Q 001403 962 ---------LKQWFPI-----SSVPISQATFSC---DCRMVFTSFVDGTLSIHEASNLEVQ-CRILST-AYLRPTTSCLH 1022 (1084)
Q Consensus 962 ---------~~~~~~~-----h~~~v~~l~fs~---dg~~l~t~~~dg~i~vwd~~~~~~~-~~~~~~-~~~~~~~~~~~ 1022 (1084)
.+.+.-+ ...+|..+.|.| .|..|++-..|+.||+||+....-. ..+... .......+.
T Consensus 102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~-- 179 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARV-- 179 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSC--
T ss_pred ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCccc--
Confidence 1111211 257899999998 4678999999999999999973211 011100 000101011
Q ss_pred eeeeEEEECCCCCCEEEEEe--CCCcEEEEcCCCCC
Q 001403 1023 VYPHAIAAHPLKPTQFAVGL--TNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1023 v~~~~~~~~p~d~~~l~~~~--~dg~v~vw~~~~~~ 1056 (1084)
-...+++|.+ ++-.|-+.+ ..|.|+-.-+--..
T Consensus 180 ~ev~S~~Fg~-~~lTLYvl~~t~~GDIYAlcP~LP~ 214 (452)
T 3pbp_A 180 NDITDLEFSK-DGLTLYCLNTTEGGDIFAFYPFLPS 214 (452)
T ss_dssp CCEEEEEECT-TSSCEEEEECTTSCEEEEESSCCCS
T ss_pred ceEEEEEEcC-CCcEEEEEecCCCCCEEEECCCCcc
Confidence 2234677776 455555544 67777766554433
|
| >2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0049 Score=49.38 Aligned_cols=35 Identities=34% Similarity=0.569 Sum_probs=32.5
Q ss_pred CCchhHHHHHHHHHhhhhcChHHHHHHHHHhcCCC
Q 001403 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFY 35 (1084)
Q Consensus 1 ~~~~~~~~~rli~q~L~~~g~~~s~~~l~~Es~~~ 35 (1084)
|+....||..||-.||+|.||..||-+|++||++.
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 78889999999999999999999999999999874
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.31 Score=52.96 Aligned_cols=241 Identities=12% Similarity=0.043 Sum_probs=116.8
Q ss_pred CCCEEEEEe--CCeEEEEEcCC----ceeEEEEc-CCCCCeEEEEEcCCCCcEEEEEeC-C---------CeEEEEEcCC
Q 001403 805 NDAYLFSAS--GGVISLYIVMT----FKTILTIM-PPSPTATSLAFNPHDNNVIAIGMD-D---------STILIYNARS 867 (1084)
Q Consensus 805 dg~~l~~~s--dg~i~vwd~~~----~~~~~~~~-~~~~~i~~l~~s~~d~~~la~g~~-d---------g~i~iwd~~~ 867 (1084)
+++.++.|+ ...+.+||..+ .+.+..+. .....-.++.+ ++++++.|+. + ..+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 667767665 46799999864 22222222 11112222223 5678887776 2 4689999987
Q ss_pred ce--eeeeec-ccccCEEEEEEcCCCCEEEEEeCC---------------------------------------CcEEEE
Q 001403 868 SE--VISKLE-GHSKRVTGLVFSDALNILVSSGGD---------------------------------------AQIFVW 905 (1084)
Q Consensus 868 ~~--~~~~l~-~h~~~V~~l~~spd~~~l~s~s~d---------------------------------------g~I~iw 905 (1084)
.+ .+..+. .....-.++. .++++++.|+.+ ..+.+|
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 173 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF 173 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred CcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence 54 222222 1111122222 578888888865 468899
Q ss_pred eCCCCceeeeeeeecCCCCccCCCCc-eEEEEccCCCEEEEE-e------CCeEEEEEc--CCcceeeEe-ecCCCCCEE
Q 001403 906 DVDGWGIQTCRSLQTPDGVMTLAPSE-THIQFHKDQTRFLLV-H------ETHLAIYEA--EELTCLKQW-FPISSVPIS 974 (1084)
Q Consensus 906 d~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~dg~~la~~-~------d~~i~vwd~--~~~~~~~~~-~~~h~~~v~ 974 (1084)
|..+.+-.....+.... .. .+++. -++++++.| . ...+..||+ .+.+-.... .........
T Consensus 174 d~~~~~W~~~~~~p~~~-------~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~ 245 (357)
T 2uvk_A 174 DPSTQQWSYAGESPWYG-------TAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG 245 (357)
T ss_dssp ETTTTEEEEEEECSSCC-------CBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBS
T ss_pred eCCCCcEEECCCCCCCC-------cccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccccc
Confidence 99886543322221111 11 12222 356666663 2 235777876 333221110 110111112
Q ss_pred EEEEccCCCEEEEEeCC----------------------CcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECC
Q 001403 975 QATFSCDCRMVFTSFVD----------------------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHP 1032 (1084)
Q Consensus 975 ~l~fs~dg~~l~t~~~d----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p 1032 (1084)
..+...+++.++.|+.+ ..+.+||+.+.+....- .++.. .....++..
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~----~~p~~----r~~~~~~~~-- 315 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSG----ELSQG----RAYGVSLPW-- 315 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEE----ECSSC----CBSSEEEEE--
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCC----CCCCC----cccceeEEe--
Confidence 22334467777777632 25788999987665321 12222 111122333
Q ss_pred CCCCEEEEEeCCCc----EEEEcCCCCCCCcccCCCCCccc
Q 001403 1033 LKPTQFAVGLTNGE----VYVIEPNEPGDTWAVLPPDEIVG 1069 (1084)
Q Consensus 1033 ~d~~~l~~~~~dg~----v~vw~~~~~~~~~~~~~~~~~~~ 1069 (1084)
++..++.|+.++. --+|-+.-.+.+|....|..-++
T Consensus 316 -~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~ 355 (357)
T 2uvk_A 316 -NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHHHH 355 (357)
T ss_dssp -TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC------
T ss_pred -CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecccccc
Confidence 3688899997642 23554444677788877766443
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.44 Score=50.67 Aligned_cols=224 Identities=10% Similarity=0.009 Sum_probs=107.6
Q ss_pred EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC----CC-------cEEEEECCCCceee--EeccCC
Q 001403 411 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DK-------TIKVWDAVTGSRTY--SFEGHG 477 (1084)
Q Consensus 411 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~----d~-------~i~vwd~~~g~~~~--~~~~h~ 477 (1084)
.+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.++|..+++-.. .+....
T Consensus 25 ~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 25 AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 37888888765322 11211111122223344555 5666662 11 17788987765432 111111
Q ss_pred CcEEEEeecccCCCcEEEEEecC-------CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCC--CCee
Q 001403 478 APVYSLCPHAKENIHFIFSISVD-------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESF 548 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~--~~~~ 548 (1084)
.....+.+ ++.+++.|+.+ ..+.+||..+.+-...-..+.......+...+++.++.++.... ....
T Consensus 101 ~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 101 CLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp CSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC
T ss_pred cccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce
Confidence 11112222 44677777754 24677777654322221112111111122256677777664221 1345
Q ss_pred EEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeEEEEEcCCCCCCCcceEEEe
Q 001403 549 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 623 (1084)
Q Consensus 549 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 623 (1084)
+.+||+.+.+-...-.... .......+.+ +++.++.|+.+ ..+.+||..+.+....-..... .....+..
T Consensus 177 ~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~ 251 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKT-PRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVS 251 (318)
T ss_dssp EEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEE
T ss_pred EEEEcCCCCEEEECCCCCC-CcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEE
Confidence 8999998876543321111 1112222222 56666777643 3577899988765544322211 12222233
Q ss_pred cCCCEEEEEECC--------------CeEEEEEcCCCC
Q 001403 624 KNGTLLAVIANE--------------NRIKILETPESN 647 (1084)
Q Consensus 624 ~~~~~l~~~~~d--------------g~i~iwd~~~~~ 647 (1084)
-++++++.|+.+ ..+.+||..+.+
T Consensus 252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 456777777653 356777777653
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.87 E-value=2.3 Score=45.16 Aligned_cols=119 Identities=15% Similarity=0.095 Sum_probs=67.7
Q ss_pred ceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccccee---eeecCCCCCeEEEEEcCC--
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKT---ALVRDPGVSVNRVVWSPD-- 399 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~---~~~~~h~~~V~~v~fspd-- 399 (1084)
....++...-...+.++|.|||+++++-... +.|++++..++...... .+..........++|+||
T Consensus 22 ~~~~~va~gL~~P~~ia~~pdG~llVter~~---------G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~ 92 (347)
T 3das_A 22 KVLRTVATGLNSPWGLAPLPGGDLLVSSRDE---------ATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYA 92 (347)
T ss_dssp EEEEEEECCCSSEEEEEECTTSCEEEEETTT---------CEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHH
T ss_pred ceeEEeecCCCCceEEEEcCCCcEEEEEecC---------CEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccc
Confidence 3445555555689999999999988884222 77888876543321111 112234567899999995
Q ss_pred -CCEEEEE-e--CCCEEEEEEccCCc----cc---ccee-eee-cccccEeEEEeecCCCcEEEEEEe
Q 001403 400 -GSLLGVA-Y--SKHIVQLYAYHGGS----DA---RQQL-EID-AHVGNVNDLAFSAPCKQISVITCG 454 (1084)
Q Consensus 400 -g~~las~-~--~dg~v~iwd~~~~~----~~---~~~~-~l~-~h~~~V~~l~~s~d~~~l~l~s~~ 454 (1084)
+.+|... + .++.|.-|.+..+. .+ +.+. .+. +....-..|+|.|||. +.++.+
T Consensus 93 ~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G 158 (347)
T 3das_A 93 SDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG 158 (347)
T ss_dssp HHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred cCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence 3444433 2 34557777766521 11 1111 111 1112345799999997 555543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.043 Score=58.21 Aligned_cols=201 Identities=9% Similarity=0.030 Sum_probs=107.7
Q ss_pred cEEEEEeCCCeEEEEEcCCceeeeeeccc-ccCEEEEEE--cC-CCCEEEEE-eCCCcEEEEeCCCCceeeeeeeecCCC
Q 001403 849 NVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVF--SD-ALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDG 923 (1084)
Q Consensus 849 ~~la~g~~dg~i~iwd~~~~~~~~~l~~h-~~~V~~l~~--sp-d~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~~~~ 923 (1084)
.++++++.||.|+-+|..+|+.+.+++.. ..++....- .+ ++..++.. +.||.|..++..+|..+....+.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999999888754 122222110 01 33334333 589999999998875432222211111
Q ss_pred CccCCCCceE---E------EEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCC------EEEEEEc-----cCCC
Q 001403 924 VMTLAPSETH---I------QFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVP------ISQATFS-----CDCR 983 (1084)
Q Consensus 924 ~~~~~~~v~~---~------~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~------v~~l~fs-----~dg~ 983 (1084)
.. ++.. . ..+.+|..++.+.++++.-.|+.+|+.+.++..+.... ..+.... ..+.
T Consensus 91 ~S----P~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 91 TS----PLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp TC----SEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred cc----ccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence 00 1110 0 01245555555789999999999999998865442111 1111111 1235
Q ss_pred EEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCCCc
Q 001403 984 MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1059 (1084)
Q Consensus 984 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~~~ 1059 (1084)
.|+.+..+..+.+.+ .+|+ +..+....+.+.... ..+.. ....+. |+.. ++++.||.|..+|.......|
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~-~~~~~-~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLD-VPLAL-QNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTT-HHHHT-TCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccccc-ccccc-cccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677777777777777 4554 333222222222100 00000 000111 3444 557888888888877666667
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.53 E-value=1.3 Score=55.30 Aligned_cols=88 Identities=8% Similarity=0.035 Sum_probs=55.2
Q ss_pred CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecC
Q 001403 546 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 625 (1084)
Q Consensus 546 ~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 625 (1084)
...|.|.|+.++..+.+-+- ..-+.-.+|..+.++.-. ..++.|+|+.+...++....... |.--.|-.
T Consensus 47 ~~~vvIidl~~~~~~~rrpi------~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~---VvfWkWis- 115 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWKWIS- 115 (1630)
T ss_pred CceEEEEECCCCCCcccccc------cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCC---ceEEEecC-
Confidence 44688888887654322111 123345678777666543 68999999999888888766443 44444443
Q ss_pred CCEEEEEECCCeEEEEEcCC
Q 001403 626 GTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 626 ~~~l~~~~~dg~i~iwd~~~ 645 (1084)
.+.|+..+. ..|.-|++..
T Consensus 116 ~~~l~lVT~-~aVyHW~~~~ 134 (1630)
T 1xi4_A 116 LNTVALVTD-NAVYHWSMEG 134 (1630)
T ss_pred CCeeEEEcC-CeEEEeccCC
Confidence 344555443 5899999864
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.84 Score=48.43 Aligned_cols=224 Identities=13% Similarity=0.112 Sum_probs=115.4
Q ss_pred CCeEEEEEcCCceeEE-EEcCCCCCeEEEEEcCCCCcEEEEEeC----CC-------eEEEEEcCCcee--eeeeccccc
Q 001403 814 GGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD----DS-------TILIYNARSSEV--ISKLEGHSK 879 (1084)
Q Consensus 814 dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~la~g~~----dg-------~i~iwd~~~~~~--~~~l~~h~~ 879 (1084)
...+..||..+.+-.. .+..........+... ++.+++.|+. ++ .+.+||..+.+- +..+.....
T Consensus 23 G~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 101 (318)
T 2woz_A 23 DTAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARC 101 (318)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBC
T ss_pred ccceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccc
Confidence 3458899998776443 2222222223333444 6788888883 12 277888877542 222222111
Q ss_pred CEEEEEEcCCCCEEEEEeCC-------CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-e-C--
Q 001403 880 RVTGLVFSDALNILVSSGGD-------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E-- 948 (1084)
Q Consensus 880 ~V~~l~~spd~~~l~s~s~d-------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~-d-- 948 (1084)
.-..+.+ ++++++.|+.+ ..+.+||..+.+-.....+.. .. ....+...++++++.| . +
T Consensus 102 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r------~~~~~~~~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 102 LFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI--KV------YGHNVISHNGMIYCLGGKTDDK 171 (318)
T ss_dssp SCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS--CE------ESCEEEEETTEEEEECCEESSS
T ss_pred ccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC--cc------cccEEEEECCEEEEEcCCCCCC
Confidence 1222222 67888888864 347888988765333211111 11 1112222567766664 2 1
Q ss_pred ---CeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeEEeccccccCCCCcc
Q 001403 949 ---THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSC 1020 (1084)
Q Consensus 949 ---~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1020 (1084)
..+.+||..+.+-...........-.+++ .-+++.++.|+.+ ..+.+||+.+.+....- .++..
T Consensus 172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~----~~p~~--- 243 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVA-IHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMT----EFPQE--- 243 (318)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEEEEEETTEEEEEEEEEETTTCCEEECC----CCSSC---
T ss_pred CccceEEEEcCCCCEEEECCCCCCCcccceEE-EECCEEEEEcCcCCCCccceEEEEECCCCeEEECC----CCCCc---
Confidence 35999999876533221111111111222 2367777777654 35778999888665321 12221
Q ss_pred cceeeeEEEECCCCCCEEEEEeCCC--------------cEEEEcCCCCCCCcccC
Q 001403 1021 LHVYPHAIAAHPLKPTQFAVGLTNG--------------EVYVIEPNEPGDTWAVL 1062 (1084)
Q Consensus 1021 ~~v~~~~~~~~p~d~~~l~~~~~dg--------------~v~vw~~~~~~~~~~~~ 1062 (1084)
....+++.. ++..++.|+.++ .+.+||+ ...+|...
T Consensus 244 --r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~ 293 (318)
T 2woz_A 244 --RSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYED--DKKEWAGM 293 (318)
T ss_dssp --CBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEET--TTTEEEEE
T ss_pred --ccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeC--CCCEehhh
Confidence 111122222 367888887653 4677777 44568766
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.44 E-value=2.1 Score=47.87 Aligned_cols=112 Identities=11% Similarity=0.072 Sum_probs=63.5
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccC---CCEEEEE--e------
Q 001403 879 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD---QTRFLLV--H------ 947 (1084)
Q Consensus 879 ~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---g~~la~~--~------ 947 (1084)
...++|+|.|||+++++-...+.|++++..++.......+...............++|+|| +.+|.++ .
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 3567999999999888754445788888765543221111111000001235779999996 5555543 2
Q ss_pred ------CCeEEEEEcCCc-------ceeeE-eecCCCCCEEEEEEccCCCEEEEEeC
Q 001403 948 ------ETHLAIYEAEEL-------TCLKQ-WFPISSVPISQATFSCDCRMVFTSFV 990 (1084)
Q Consensus 948 ------d~~i~vwd~~~~-------~~~~~-~~~~h~~~v~~l~fs~dg~~l~t~~~ 990 (1084)
...|.-++...+ +.+.. +..........|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234655655322 11211 11111235789999999988777654
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.42 Score=51.83 Aligned_cols=242 Identities=9% Similarity=-0.025 Sum_probs=112.3
Q ss_pred CCCEEEEEeCC-CEEEEEEccCC-ccccceeeee-cccccEeEEEeecCCCcEEEEEEeC-C---------CcEEEEECC
Q 001403 399 DGSLLGVAYSK-HIVQLYAYHGG-SDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGD-D---------KTIKVWDAV 465 (1084)
Q Consensus 399 dg~~las~~~d-g~v~iwd~~~~-~~~~~~~~l~-~h~~~V~~l~~s~d~~~l~l~s~~~-d---------~~i~vwd~~ 465 (1084)
+++.++.|+.+ ..+.++|..+. ..-.....+. .....-.++.+ +++ +++.|+. + ..+.+||+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGN--LYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTE--EEEECCEEECTTSCEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCE--EEEEcCCCCCCCccceeeccEEEEeCC
Confidence 66677777543 46888888641 1111111111 01111112222 455 5555654 2 468899988
Q ss_pred CCceee--Eec-cCCCcEEEEeecccCCCcEEEEEecC---------------------------------------CeE
Q 001403 466 TGSRTY--SFE-GHGAPVYSLCPHAKENIHFIFSISVD---------------------------------------GKI 503 (1084)
Q Consensus 466 ~g~~~~--~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d---------------------------------------g~i 503 (1084)
+.+-.. .+. .....-.++.+ ++.+++.|+.+ ..+
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFVH----NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFL 170 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEEE----TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEE
T ss_pred CCcEEECCCCCCcccccceEEEE----CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccE
Confidence 765332 111 11111122222 45677777754 468
Q ss_pred EEEECCCCCceEeecCCC-CeE-EEEEEcCCCCEEEEEeeCCCC--CeeEEEecC--CCceEeeeeeccccccCceEEEE
Q 001403 504 KAWLYDSLGARVDYDAPG-LGC-TRMAYSANGRRLFSCGTSKEG--ESFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVH 577 (1084)
Q Consensus 504 ~iwd~~~~~~~~~~~~~~-~~i-~~~~~s~d~~~l~~~~~~~~~--~~~i~~wd~--~~~~~~~~~~~~~~~~~~v~~~~ 577 (1084)
.+||..+..-...-.... ... .+++. -+++.++.++.+..+ ...+..||+ .+.+-...-.... ........+
T Consensus 171 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~-~~~~~~~~~ 248 (357)
T 2uvk_A 171 LSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSS-PDGVAGGFA 248 (357)
T ss_dssp EEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSST-TTCCBSCEE
T ss_pred EEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCC-CcccccceE
Confidence 888887654322221111 111 22222 356666666543221 234677776 4443322111110 011111112
Q ss_pred EcCCCCEEEEEECC----------------------CcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC
Q 001403 578 FDTAKDQILAAGDD----------------------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 635 (1084)
Q Consensus 578 ~s~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 635 (1084)
...+++.++.|+.+ ..+.+||+.+.+....-..... .....+...++++++.|+.+
T Consensus 249 ~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~i~v~GG~~ 326 (357)
T 2uvk_A 249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG--RAYGVSLPWNNSLLIIGGET 326 (357)
T ss_dssp EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC--CBSSEEEEETTEEEEEEEEC
T ss_pred EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC--cccceeEEeCCEEEEEeeeC
Confidence 22355666666532 2578899987765544332222 22233444578888888864
Q ss_pred C------eEEEEEcCCCCeeeec
Q 001403 636 N------RIKILETPESNSVDAA 652 (1084)
Q Consensus 636 g------~i~iwd~~~~~~~~~~ 652 (1084)
+ .+.++++.+++.+...
T Consensus 327 ~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 327 AGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp GGGCEEEEEEEEEC-CCSCEEEC
T ss_pred CCCCEeeeEEEEEEcCcEeEeee
Confidence 2 4566688777665443
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=94.86 E-value=1.4 Score=48.95 Aligned_cols=195 Identities=12% Similarity=0.122 Sum_probs=113.8
Q ss_pred CCCCEEEEEe--CCeEEEEEcCCceeEEEEcCC-CCCeEEEEEc--CCCCcEEEEEeC-------CCeE---------EE
Q 001403 804 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAFN--PHDNNVIAIGMD-------DSTI---------LI 862 (1084)
Q Consensus 804 ~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s--~~d~~~la~g~~-------dg~i---------~i 862 (1084)
.||+||..-. +..|...++...++-..+.-+ ...+..++|- | +..+++.+++ ||.. -+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 3789999887 577888999988876665543 4577788886 6 5667776654 2221 11
Q ss_pred ---EEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCc---------------EEEEeCCC-------Cceeee--
Q 001403 863 ---YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ---------------IFVWDVDG-------WGIQTC-- 915 (1084)
Q Consensus 863 ---wd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~---------------I~iwd~~~-------~~~~~~-- 915 (1084)
.|..+.+...++.- .+..-.+...++|++.++.+.+.. +.++++.. |+....
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 12222222221110 112223455677888887765422 55555431 111111
Q ss_pred ---eeeecCC----CCc-----cCCCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcce-------------eeEeecC
Q 001403 916 ---RSLQTPD----GVM-----TLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC-------------LKQWFPI 968 (1084)
Q Consensus 916 ---~~~~~~~----~~~-----~~~~~v~~~~~s~dg~~la~~--~d~~i~vwd~~~~~~-------------~~~~~~~ 968 (1084)
.++.... +.. ........+.++|||++++++ -+.++.++|++.... ..+..
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-- 375 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-- 375 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence 1111111 000 111245678999999999995 567899999874221 11211
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001403 969 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 969 h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
-.......+|.++|.-..|-.-|..|.-|++...
T Consensus 376 ~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 376 LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 1446678999999955555568999999999864
|
| >1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.019 Score=45.68 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhhhhcChHHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhccc
Q 001403 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLSSF 60 (1084)
Q Consensus 5 ~~~~~rli~q~L~~~g~~~s~~~l~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~~~ 60 (1084)
++|+-+-|++||...||.+++.+|.+|.++..+ ...=..-+++-+|..++.+-+++
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKKI 67 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV 67 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHHH
Confidence 578999999999999999999999999998875 22234567777887777765543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=94.32 E-value=5.9 Score=41.28 Aligned_cols=214 Identities=7% Similarity=0.070 Sum_probs=117.7
Q ss_pred EcCCCCEEEEEe--CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC------------CCcEEE
Q 001403 396 WSPDGSLLGVAY--SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------------DKTIKV 461 (1084)
Q Consensus 396 fspdg~~las~~--~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~------------d~~i~v 461 (1084)
|+.+|.+|.... .++.|...+.+... .. .+... .+--++++|+.++.+.-.. ...|+.
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~---~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~ 92 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IH---KLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCR 92 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCS-CE---EEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCC-CE---EccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEE
Confidence 446788888775 35666666665543 22 23222 1345688999533332221 246777
Q ss_pred EECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEe--cCC--eEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEE
Q 001403 462 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 537 (1084)
Q Consensus 462 wd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 537 (1084)
.++..++.. .+... ... .+++ +++.|+-.. .++ .|..-+++........ .+.. .+++++++.|+
T Consensus 93 i~~dg~~~~-~l~~~--~~~--~~s~--~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt-~~~~----~~~~~~g~~iy 160 (302)
T 3s25_A 93 IKRNGHGST-VLDPD--PCI--YASL--IGNYIYYLHYDTQTATSLYRIRIDGEEKKKIK-NHYL----FTCNTSDRYFY 160 (302)
T ss_dssp EETTSCCCE-EEECS--CEE--EEEE--ETTEEEEEEESSSSCEEEEEEETTSCCCEEEE-SSCC----CCSEEETTEEE
T ss_pred EeCCCCcce-EeecC--Ccc--EEEE--eCCEEEEEeecCCCCceEEEEECCCCCeEEEe-CCCc----eEeeEECCEEE
Confidence 787766532 23211 222 3333 445666554 333 4555555543333322 2221 45788999998
Q ss_pred EEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC--CcEEEEECCCCeEEEEEcCCCCCC
Q 001403 538 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--HVIKIWDMNKVQLLTTIDAGGGLP 615 (1084)
Q Consensus 538 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~ 615 (1084)
..+. +...|+..++..+.....+.+. .. ..+.|++.+|+-.... ..|..-++..+.. ..+.. .
T Consensus 161 ~t~~---g~~~Iy~~~l~g~~~~~l~~~~------~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~-~--- 225 (302)
T 3s25_A 161 YNNP---KNGQLYRYDTASQSEALFYDCN------CY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLTE-A--- 225 (302)
T ss_dssp EECT---TTCCEEEEETTTTEEEEEECSC------EE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECSC-S---
T ss_pred EEeC---CCceEEEEECCCCCEEEEeCCC------cc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEeC-C---
Confidence 7753 4667999998877655444321 22 2356899988876543 3566666665543 33321 1
Q ss_pred CcceEEEecCCCEEEEEEC--CCeEEEEEcCCC
Q 001403 616 ENPRICFNKNGTLLAVIAN--ENRIKILETPES 646 (1084)
Q Consensus 616 ~v~~v~~s~~~~~l~~~~~--dg~i~iwd~~~~ 646 (1084)
.+ ..|+|++..|..+.. .+.|..-++...
T Consensus 226 ~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 226 NI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp CE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred Cc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 12 458888888876643 356666666543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.15 Score=54.09 Aligned_cols=194 Identities=10% Similarity=0.024 Sum_probs=103.2
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccC-CCcEEEEeecc-cCCCcEEEEE-ecCCeEEEEECCCCCceEeecCC----C
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLCPHA-KENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAP----G 521 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h-~~~v~~~~~~~-~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~----~ 521 (1084)
+++.++.||.|.-.|.++|+.+-++... ..++....-.. ..++..++.. +.||.+..++..++.....+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 5788889999999999999998888654 12222221111 1133333333 68999999988766444332211 1
Q ss_pred CeEEE---EEE-----cCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCc-----eEEEEEc-----CCCC
Q 001403 522 LGCTR---MAY-----SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS-----VSVVHFD-----TAKD 583 (1084)
Q Consensus 522 ~~i~~---~~~-----s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~-----v~~~~~s-----~~~~ 583 (1084)
.++.. ..+ +..+..+++++. ++.+...|+.+|+.+..+...... .. ..+.... ..+.
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSKN-GYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCBC-C--------------------CC
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCCc-ccccccccccccccccccccCCC
Confidence 11111 000 014556667665 777999999999999888653210 10 0111110 1235
Q ss_pred EEEEEECCCcEEEEECCCCeEEEEE-----cCCCCCCCc-ceEEEecCCCEEEEEECCCeEEEEEcCCCCeee
Q 001403 584 QILAAGDDHVIKIWDMNKVQLLTTI-----DAGGGLPEN-PRICFNKNGTLLAVIANENRIKILETPESNSVD 650 (1084)
Q Consensus 584 ~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~v-~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 650 (1084)
.++.+..+..+.+.+ ++|+ ...+ ........+ ..-..+.|+.+ ++++.||.|.-+|..++..+.
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677777666666655 3343 2111 100000000 00011234555 457889999999998887654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=92.99 E-value=9.8 Score=39.57 Aligned_cols=169 Identities=8% Similarity=0.057 Sum_probs=95.9
Q ss_pred eecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecC--------------CeEEEE
Q 001403 441 FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD--------------GKIKAW 506 (1084)
Q Consensus 441 ~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--------------g~i~iw 506 (1084)
|+.++..+++.....++.|...+.. |.....+... .+..+ + .++.+|+-+... ..|+..
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~~--~~~~i--~--~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i 93 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNID-GSNIHKLSND--TAMYI--N--ADKNYVYYVRNNNQKITSQTFFSYDRNSLCRI 93 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETT-SCSCEEEEEE--EEEEE--E--ECSSEEEEEEECC------CCSSCCSEEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCC-CCCCEEccCC--ceeeE--E--EcCCEEEEEECCCCcccccceeccCCCeEEEE
Confidence 3456775444433445666666643 3334444321 12222 2 244566555432 356777
Q ss_pred ECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEE
Q 001403 507 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL 586 (1084)
Q Consensus 507 d~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 586 (1084)
+++..+........ +..+++++++|+....+.++...|+..++..... ..+..+. + ..++++++.|+
T Consensus 94 ~~dg~~~~~l~~~~-----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~-----~--~~~~~~g~~iy 160 (302)
T 3s25_A 94 KRNGHGSTVLDPDP-----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHY-----L--FTCNTSDRYFY 160 (302)
T ss_dssp ETTSCCCEEEECSC-----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSC-----C--CCSEEETTEEE
T ss_pred eCCCCcceEeecCC-----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCC-----c--eEeeEECCEEE
Confidence 77766543332221 2367889999998762234567788888875443 3343333 1 35678888888
Q ss_pred EEEC-CCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC
Q 001403 587 AAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 635 (1084)
Q Consensus 587 ~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 635 (1084)
-.+. ...|++-++..+.....+. +. . ...+.|++.+|+-....
T Consensus 161 ~t~~g~~~Iy~~~l~g~~~~~l~~--~~---~-~~~~~P~g~~iy~t~~~ 204 (302)
T 3s25_A 161 YNNPKNGQLYRYDTASQSEALFYD--CN---C-YKPVVLDDTNVYYMDVN 204 (302)
T ss_dssp EECTTTCCEEEEETTTTEEEEEEC--SC---E-EEEEEEETTEEEEEEGG
T ss_pred EEeCCCceEEEEECCCCCEEEEeC--CC---c-cceeeecCCEEEEEEcC
Confidence 7665 6788888887776554443 11 1 23466888888776543
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=92.64 E-value=14 Score=40.30 Aligned_cols=260 Identities=11% Similarity=0.057 Sum_probs=121.8
Q ss_pred CCCccEEEecC--CCCEEEEEeCC----eEEEEEcCCceeEEEEcC--------------CCCCeEEEEEcCCC-CcEEE
Q 001403 794 QEAVPCFALSK--NDAYLFSASGG----VISLYIVMTFKTILTIMP--------------PSPTATSLAFNPHD-NNVIA 852 (1084)
Q Consensus 794 ~~~v~~l~~s~--dg~~l~~~sdg----~i~vwd~~~~~~~~~~~~--------------~~~~i~~l~~s~~d-~~~la 852 (1084)
...|.+|++.| ++...+.+..| .|... ...++.-..+.. ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45688999998 66666665554 33322 222322222211 11257789998733 44555
Q ss_pred EEeCCCeEEEEEcCCceeeeeec---c----------------cccCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCce
Q 001403 853 IGMDDSTILIYNARSSEVISKLE---G----------------HSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGI 912 (1084)
Q Consensus 853 ~g~~dg~i~iwd~~~~~~~~~l~---~----------------h~~~V~~l~~spd-~~~l~s~s~dg~I~iwd~~~~~~ 912 (1084)
++...+.|...+ +.|+.-..+. . ....|.+|.+.|. ...|..+..++.|...+-. ++
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~- 209 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GT- 209 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST-TS-
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC-CC-
Confidence 566566555543 2222211111 0 1235788999873 3444445444444443222 21
Q ss_pred eeeeeeec-CCC-Cc-----cCCCCceEEEEccC-CCEEEEEeCCeEEEEEcCCcceeeEeecCC-C---CCEEEEEEcc
Q 001403 913 QTCRSLQT-PDG-VM-----TLAPSETHIQFHKD-QTRFLLVHETHLAIYEAEELTCLKQWFPIS-S---VPISQATFSC 980 (1084)
Q Consensus 913 ~~~~~~~~-~~~-~~-----~~~~~v~~~~~s~d-g~~la~~~d~~i~vwd~~~~~~~~~~~~~h-~---~~v~~l~fs~ 980 (1084)
....+.. ... .. .....+..+++.|+ ...|.++..+.|...+- .|+.-..+...- . ..+..+++.|
T Consensus 210 -tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p 287 (394)
T 3b7f_A 210 -DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQ 287 (394)
T ss_dssp -SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred -CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECC
Confidence 1111111 000 00 00124788999986 35566665665555442 233222211111 1 3456788876
Q ss_pred -CCCEEEEEeC-----------CCcEEEEEcCCC-ceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcE
Q 001403 981 -DCRMVFTSFV-----------DGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV 1047 (1084)
Q Consensus 981 -dg~~l~t~~~-----------dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v 1047 (1084)
+...|+.+.. ++...+|....+ +--..+. .-++....-..+...+++++|.++..|.+++.+|.|
T Consensus 288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 3334444432 333455655543 3222222 112211000111223577888655667777766665
Q ss_pred EEEcCCCCCCCcccCC
Q 001403 1048 YVIEPNEPGDTWAVLP 1063 (1084)
Q Consensus 1048 ~vw~~~~~~~~~~~~~ 1063 (1084)
. .-...+.+|....
T Consensus 366 ~--~S~D~G~tW~~~~ 379 (394)
T 3b7f_A 366 W--ASADEGEHWQCIA 379 (394)
T ss_dssp E--EESSTTSBCEEEE
T ss_pred E--EECCCCCCceEcc
Confidence 4 4445677887643
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=92.57 E-value=15 Score=40.75 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=35.6
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCEEEEEEccCCccccceeeee---------cccccEeEEEeecC
Q 001403 389 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAP 444 (1084)
Q Consensus 389 ~~V~~v~fspdg~-~las~~~dg~v~iwd~~~~~~~~~~~~l~---------~h~~~V~~l~~s~d 444 (1084)
...+.++|.|||. .|.++...|.|++++.........+..+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3567899999996 56666788999999754331111111111 11456789999997
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=92.45 E-value=5.2 Score=47.58 Aligned_cols=196 Identities=10% Similarity=0.098 Sum_probs=107.0
Q ss_pred CCCCEEEEEeC-----CeEEEEEcCCceeEEEE-c-------CCCCCeEEEEEcCCCCcEEEEEeCCC------eEEEEE
Q 001403 804 KNDAYLFSASG-----GVISLYIVMTFKTILTI-M-------PPSPTATSLAFNPHDNNVIAIGMDDS------TILIYN 864 (1084)
Q Consensus 804 ~dg~~l~~~sd-----g~i~vwd~~~~~~~~~~-~-------~~~~~i~~l~~s~~d~~~la~g~~dg------~i~iwd 864 (1084)
.++..++.|+. +.+.+||..+++-...- . .....-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 46666666652 45889998876543322 1 1112234444543 567888887543 588999
Q ss_pred cCCce--eeeeecccccCEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceeeeeeee-cCCCCccCCCCceEEEEccC
Q 001403 865 ARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQ-TPDGVMTLAPSETHIQFHKD 939 (1084)
Q Consensus 865 ~~~~~--~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~d 939 (1084)
..+.+ .+..+......-. ++...++++++.||.++ .+.+||..+..-....... .+... .....+.+..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h~-~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r----~~~~a~v~~~~ 549 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRHS-ACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS----LVSAGLEFDPV 549 (695)
T ss_dssp TTTTEEEECCCCSBCCBSCE-EEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC----CBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCcccce-EEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc----cceeEEEEeCC
Confidence 88743 3332222111112 22324889999988765 6899999886533221100 01111 12234565665
Q ss_pred -CCEEEEE-e--C-----CeEEEEEcCCcce-----eeEeec--CCCCCEEEEEEccCCCEEEEEeCC--------CcEE
Q 001403 940 -QTRFLLV-H--E-----THLAIYEAEELTC-----LKQWFP--ISSVPISQATFSCDCRMVFTSFVD--------GTLS 995 (1084)
Q Consensus 940 -g~~la~~-~--d-----~~i~vwd~~~~~~-----~~~~~~--~h~~~v~~l~fs~dg~~l~t~~~d--------g~i~ 995 (1084)
+++++.| . + +.+.+||+.+..- -..... .....-.+++...+++.++.|+.+ ..|.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 5666664 2 2 3589999987761 111111 111111123333447788888743 4699
Q ss_pred EEEcCCCcee
Q 001403 996 IHEASNLEVQ 1005 (1084)
Q Consensus 996 vwd~~~~~~~ 1005 (1084)
+||+.+.+..
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999998776
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=90.99 E-value=11 Score=40.49 Aligned_cols=172 Identities=13% Similarity=0.171 Sum_probs=96.8
Q ss_pred CeEEEEEcCCc--eeEEEEcCC------CCCeEEEEEc---CC---CCcEEEEEe-CCCeEEEEEcCCceeeeeec----
Q 001403 815 GVISLYIVMTF--KTILTIMPP------SPTATSLAFN---PH---DNNVIAIGM-DDSTILIYNARSSEVISKLE---- 875 (1084)
Q Consensus 815 g~i~vwd~~~~--~~~~~~~~~------~~~i~~l~~s---~~---d~~~la~g~-~dg~i~iwd~~~~~~~~~l~---- 875 (1084)
-+|.+||+.+. +.++++.-+ ......+++. |. ++.++.... ..+.|.|+|+.+++.-+.+.
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 35778888888 888776532 2457888887 21 134444444 46789999999886543331
Q ss_pred ----------cc----ccCEEEEEEcCC----CCEEEEEeCCCcEEEEeCCCCceeee---eeeecCCCCccCCCCceEE
Q 001403 876 ----------GH----SKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDGWGIQTC---RSLQTPDGVMTLAPSETHI 934 (1084)
Q Consensus 876 ----------~h----~~~V~~l~~spd----~~~l~s~s~dg~I~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~ 934 (1084)
|. ...|..+++||+ ++.|....-.+ -++|.+.+..+... ..++.. |.......-..+
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~ 280 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIAL 280 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceE
Confidence 11 246888999998 77777766555 35666553211110 001100 000000123345
Q ss_pred EEc-cCCCEEEE-EeCCeEEEEEcCC-c---ceeeEeecC-CCCCEEEEEEccCCCEEEEE
Q 001403 935 QFH-KDQTRFLL-VHETHLAIYEAEE-L---TCLKQWFPI-SSVPISQATFSCDCRMVFTS 988 (1084)
Q Consensus 935 ~~s-~dg~~la~-~~d~~i~vwd~~~-~---~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~ 988 (1084)
++. .+|.++++ ...+.|..|+..+ . +....+... .-..+..+.+..+|.+.+++
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 675 66776666 4778899999875 1 112222211 12346677777777655554
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=90.26 E-value=34 Score=40.35 Aligned_cols=248 Identities=8% Similarity=0.044 Sum_probs=128.2
Q ss_pred EEE-EcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecC-CCC------CeEEEEEcCCCCEEEEE----
Q 001403 339 SMD-FHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD-PGV------SVNRVVWSPDGSLLGVA---- 406 (1084)
Q Consensus 339 ~v~-~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~-h~~------~V~~v~fspdg~~las~---- 406 (1084)
.+. ++|||+++|.+..+-.+.. ..++++|+.++...-.. +.. -+. ....++|-.+...+++.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~----~~~~~~d~~t~~~~~~~--~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~ 206 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDE----MFFREWDLEKKDFVKNG--FEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHK 206 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSE----EEEEEEETTTTEECTTC--SCCBCTTCCBCCEETCCEEEEETTEEEECCCCST
T ss_pred ceeecCCCCCEEEEEeCCCCCce----eEEEEEECCcCCcCCCC--cccccccccccccccceeeEECCCEEEEEeCCCC
Confidence 445 9999999999766522222 78999999987654321 110 000 11345776444444331
Q ss_pred ------eCCCEEEEEEccCCccccceeeeecccccE-eEEEeecCCCcE---EEEEEeCC---CcEEEEECCC--Cceee
Q 001403 407 ------YSKHIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQI---SVITCGDD---KTIKVWDAVT--GSRTY 471 (1084)
Q Consensus 407 ------~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V-~~l~~s~d~~~l---~l~s~~~d---~~i~vwd~~~--g~~~~ 471 (1084)
+....|+.|.+-+...-.. ..+.+....+ .....+++++.. .+++.+.+ ..+.+.|... +. +.
T Consensus 207 ~~~~~~~~~~~v~~~~~Gt~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~ 284 (711)
T 4hvt_A 207 NEITSSLYPNSLYIWKRGESIEKAK-KLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQ 284 (711)
T ss_dssp TCBCTTSSBCEEEEEETTSCGGGCE-EEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EE
T ss_pred CCcCcCCCCCEEEEEECCCChHHCe-EEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ce
Confidence 1124588888776532211 1333333332 345556777742 35554422 3456666543 43 22
Q ss_pred EeccCCCcEEEEeecccCCCcEEEEE----------ecCCeEEEEECCCC-------CceEe-e-cCCCCeEEEEEEcCC
Q 001403 472 SFEGHGAPVYSLCPHAKENIHFIFSI----------SVDGKIKAWLYDSL-------GARVD-Y-DAPGLGCTRMAYSAN 532 (1084)
Q Consensus 472 ~~~~h~~~v~~~~~~~~~~~~~l~s~----------s~dg~i~iwd~~~~-------~~~~~-~-~~~~~~i~~~~~s~d 532 (1084)
.+....... +..+ .++.+++.. ...+.|...++... ..... + ......+..+.+..+
T Consensus 285 ~l~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (711)
T 4hvt_A 285 KINMPSDAT--LQGS--FKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD 360 (711)
T ss_dssp ECCSCTTCE--EEEE--ETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS
T ss_pred EeecCCcce--Eeee--ECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC
Confidence 332111111 1111 133444422 24677888888763 11222 2 333446778888876
Q ss_pred CCEEEEEeeCCCCCeeEEEecCCCce-Eeee-eeccccccCceEEEEEcCCCCEEEE-EE---CCCcEEEEECCCCeE
Q 001403 533 GRRLFSCGTSKEGESFLVEWNESEGA-IKRT-YQGLQLQHNSVSVVHFDTAKDQILA-AG---DDHVIKIWDMNKVQL 604 (1084)
Q Consensus 533 ~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~-~~---~dg~i~iwd~~~~~~ 604 (1084)
..+++... ++...+.++|+.+++ .... +.... .+.+.....++++..++. .+ .-+.+..+|+. ++.
T Consensus 361 -~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~--~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~ 432 (711)
T 4hvt_A 361 -RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPY--QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HEL 432 (711)
T ss_dssp -CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCS--TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCE
T ss_pred -EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCC--CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcE
Confidence 44444433 446678999987775 2222 22221 135666667777655444 33 34678888876 543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=89.42 E-value=9.1 Score=45.47 Aligned_cols=198 Identities=13% Similarity=0.049 Sum_probs=101.3
Q ss_pred cCCCcEEEEEEeCC----CcEEEEECCCCceeeEe-c-------cCCCcEEEEeecccCCCcEEEEEecCC------eEE
Q 001403 443 APCKQISVITCGDD----KTIKVWDAVTGSRTYSF-E-------GHGAPVYSLCPHAKENIHFIFSISVDG------KIK 504 (1084)
Q Consensus 443 ~d~~~l~l~s~~~d----~~i~vwd~~~g~~~~~~-~-------~h~~~v~~~~~~~~~~~~~l~s~s~dg------~i~ 504 (1084)
.++. +++.||.+ ..+.+||..+++-...- . .....-..+.+ ..++.+++.|+.++ .+.
T Consensus 396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~--~~~~~lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI--SRNNQLLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEE--TTTTEEEEECCBSSTTCBCCCCE
T ss_pred ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEE--ccCCEEEEEcCCCCCCCccccEE
Confidence 3455 56666643 46888898877543221 1 00111112222 11446777776543 467
Q ss_pred EEECCCCCceEeecCCCC-eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeec--cccccCceEEEEEcCC
Q 001403 505 AWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTA 581 (1084)
Q Consensus 505 iwd~~~~~~~~~~~~~~~-~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~--~~~~~~~v~~~~~s~~ 581 (1084)
+||..+..-...-..+.. .-.+++...+++.++.|+.+..+ .+.+||..+.+-...-.. .........++.+..+
T Consensus 472 ~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 472 IFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp EEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred EEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 787766432221111111 11223333488888888765543 699999988765433210 1101122333555555
Q ss_pred -CCEEEEEEC--C-----CcEEEEECCCCe------EEEEEcCCCCCCCc-ceEEEecCCCEEEEEEC--------CCeE
Q 001403 582 -KDQILAAGD--D-----HVIKIWDMNKVQ------LLTTIDAGGGLPEN-PRICFNKNGTLLAVIAN--------ENRI 638 (1084)
Q Consensus 582 -~~~l~~~~~--d-----g~i~iwd~~~~~------~~~~~~~~~~~~~v-~~v~~s~~~~~l~~~~~--------dg~i 638 (1084)
+..++.|+. + ..+.+||+.+.. ........ ..+.. .+++...++++++.|+. ...+
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p-~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v 628 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP-LFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSI 628 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG-GGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC-CCCcccceEEEeCCCEEEEECCccCCCCCCCCCeE
Confidence 556666664 2 458899998877 22222210 01111 23333334777777774 3458
Q ss_pred EEEEcCCCC
Q 001403 639 KILETPESN 647 (1084)
Q Consensus 639 ~iwd~~~~~ 647 (1084)
.+||..+.+
T Consensus 629 ~~yd~~t~~ 637 (695)
T 2zwa_A 629 ISLDPLSET 637 (695)
T ss_dssp EEEETTTTE
T ss_pred EEEECCCCe
Confidence 888887663
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=89.39 E-value=25 Score=37.56 Aligned_cols=170 Identities=12% Similarity=0.129 Sum_probs=93.2
Q ss_pred cEEEEECCCC--ceeeEecc------CCCcEEEEeec-ccC----CCcEEE-EEecCCeEEEEECCCCCceEeec----C
Q 001403 458 TIKVWDAVTG--SRTYSFEG------HGAPVYSLCPH-AKE----NIHFIF-SISVDGKIKAWLYDSLGARVDYD----A 519 (1084)
Q Consensus 458 ~i~vwd~~~g--~~~~~~~~------h~~~v~~~~~~-~~~----~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~----~ 519 (1084)
.|.+||+.++ +.++++.- ....+..+.+. ..+ ++.+++ +-+..+.|.++|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778899988 88776643 23457778776 211 123444 44456789999998776544331 1
Q ss_pred C--------------CCeEEEEEEcCC----CCEEEEEeeCCCCCeeEEEecCC-----CceEeee--eeccccccCceE
Q 001403 520 P--------------GLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWNES-----EGAIKRT--YQGLQLQHNSVS 574 (1084)
Q Consensus 520 ~--------------~~~i~~~~~s~d----~~~l~~~~~~~~~~~~i~~wd~~-----~~~~~~~--~~~~~~~~~~v~ 574 (1084)
. ...+..++++|+ ++.|+.....+ -.+|.+. ....... ..+.......-.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-----~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~ 278 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-----IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAI 278 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-----SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-----CcEEEEEHHHhhCcchhhceEEeeecCCCCCcc
Confidence 1 136788999998 78888776432 1222221 1111111 112220012334
Q ss_pred EEEEc-CCCCEEEEEECCCcEEEEECCC-C---eEEEEEcCCCCCCCcceEEEecCCCEEEEE
Q 001403 575 VVHFD-TAKDQILAAGDDHVIKIWDMNK-V---QLLTTIDAGGGLPENPRICFNKNGTLLAVI 632 (1084)
Q Consensus 575 ~~~~s-~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 632 (1084)
..++. .+|..+++--+...|..|+..+ . +....+...........+.+.++|.+.+..
T Consensus 279 ~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 279 ALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred eEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 55675 5676666777888999999876 1 122233222233345566665555444433
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=85.84 E-value=33 Score=35.04 Aligned_cols=183 Identities=10% Similarity=0.011 Sum_probs=97.8
Q ss_pred CccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec
Q 001403 796 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 875 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~ 875 (1084)
.|..++...+- .++. .+|.+..|-....-.+..-..-...|..++... ...+.-. ||.|+.|-....-.+....
T Consensus 64 ~i~~ia~G~~h-s~~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYH-SLAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSE-EEEE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCE-EEEE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 46666665443 3333 488888887654222111111124688887765 2334445 9999999765522221111
Q ss_pred ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEE
Q 001403 876 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE 955 (1084)
Q Consensus 876 ~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd 955 (1084)
.....|..++...+.. ++ -. ||.|..|-........ .+... ...|..++...+... +. .++.|+.|-
T Consensus 138 ~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg-----~p~~~---~~~v~~i~~G~~hs~-al-~~G~v~~wG 204 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTT-----VPAEA---QSGVDDVAGGIFHSL-AL-KDGKVIAWG 204 (282)
T ss_dssp GGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTS-----CCGGG---GSSEEEEEECSSEEE-EE-ETTEEEEEE
T ss_pred cCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCC-----Cceec---CCCeEEEEecCCEEE-EE-ECCeEEEEE
Confidence 2345677777754433 33 23 7999999776522111 01000 124666666554444 34 799999997
Q ss_pred cCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001403 956 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1001 (1084)
Q Consensus 956 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~ 1001 (1084)
......+.... .....|..++...+.. ++.. ||.|..|-...
T Consensus 205 ~n~~gqlg~p~-~~~~~v~~i~~G~~h~-~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 205 DNRYKQTTVPT-EALSGVSAIASGEWYS-LALK--NGKVIAWGSSR 246 (282)
T ss_dssp CCTTSTTCCCG-GGGSSCCEEEECSSCE-EEEE--TTEEEEESTTC
T ss_pred CCCCCCCCCCc-ccCCCceEEEcCCCEE-EEEE--CCEEEEecCCC
Confidence 65433222211 1134577777555433 3333 89999996554
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=84.76 E-value=37 Score=34.66 Aligned_cols=205 Identities=12% Similarity=0.104 Sum_probs=99.4
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 444 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d 444 (1084)
+.|..|-.....+.-.. ......|..++...+-. +|. . ||.|..|-......+.. ...-...|..++...+
T Consensus 42 G~v~~wG~n~~Gqlg~p---~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~---P~~~~~~v~~ia~G~~ 112 (282)
T 3qhy_B 42 GKVLGWGANLNGQLTMP---AATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTV---PAEARSGVDAIAAGAW 112 (282)
T ss_dssp TEEEEEECCSSSTTSCC---GGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCC---CGGGSSSEEEEEEETT
T ss_pred CEEEEEeCCCCCCCCCC---ccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCC---CcccCCCeEEEECcCC
Confidence 66666665443222110 00123576777654432 232 4 89999998765332221 1111246777776644
Q ss_pred CCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeE
Q 001403 445 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGC 524 (1084)
Q Consensus 445 ~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i 524 (1084)
- .+.-. ||.|..|-......+..-......|..++.- ....++ -. ||.|..|-.......-........|
T Consensus 113 h----s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G---~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v 182 (282)
T 3qhy_B 113 A----SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG---VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGV 182 (282)
T ss_dssp E----EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC---SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSE
T ss_pred E----EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc---cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCe
Confidence 3 23334 8999999765422221111123456666542 222333 34 7999999765433322111112356
Q ss_pred EEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 001403 525 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 601 (1084)
Q Consensus 525 ~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 601 (1084)
..++...+...++ . ++.|+.|-....-.+...... ...|..++..... .+ +.. ||.|+.|-...
T Consensus 183 ~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~p~~~---~~~v~~i~~G~~h-~~-al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 183 DDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTVPTEA---LSGVSAIASGEWY-SL-ALK-NGKVIAWGSSR 246 (282)
T ss_dssp EEEEECSSEEEEE---E----TTEEEEEECCTTSTTCCCGGG---GSSCCEEEECSSC-EE-EEE-TTEEEEESTTC
T ss_pred EEEEecCCEEEEE---E----CCeEEEEECCCCCCCCCCccc---CCCceEEEcCCCE-EE-EEE-CCEEEEecCCC
Confidence 6665544332222 2 445777754432111111011 1346666655443 22 333 88888886544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1084 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-10 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-14 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.001 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 7e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.002 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-12 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.003 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.004 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 8e-11 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-10 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 5e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 5e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 9e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.001 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.002 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.004 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.002 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-08 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.001 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.002 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 8e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 9e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 9e-08 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.004 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 7e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 7e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.002 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 7e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 9e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.001 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.001 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.003 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 79.0 bits (193), Expect = 3e-16
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 8/139 (5%)
Query: 368 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 427
K+WD+ +N + + P+G+ +L+ +
Sbjct: 209 KLWDVREGMCRQT---FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Query: 428 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 487
+ G + ++FS + + + DD VWDA+ R GH V L
Sbjct: 266 HDNIICG-ITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322
Query: 488 KENIHFIFSISVDGKIKAW 506
+ + S D +K W
Sbjct: 323 DGM--AVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 75.5 bits (184), Expect = 4e-15
Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 11/150 (7%)
Query: 451 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK--AWLY 508
++ D + K+WD G +F GH + + ++C N + S D +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRA 257
Query: 509 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 568
D +D G T +++S +GR L + W+ + G
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN----CNVWDALKADRAGVLAG--- 310
Query: 569 QHNSVSVVHFDTAKDQILAAGDDHVIKIWD 598
N VS + + D +KIW+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 74.8 bits (182), Expect = 8e-15
Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 10/164 (6%)
Query: 746 SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 805
+ V + P L +S +L+ R G T + + + N
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASA--KLWDVREGMCRQ----TFTGHESDINAICFFPN 237
Query: 806 DAYLFSASGG---VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 862
+ S + + TS++F+ ++ G DD +
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNV 296
Query: 863 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906
++A ++ L GH RV+ L +D + + D+ + +W+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 62.8 bits (151), Expect = 6e-11
Identities = 21/136 (15%), Positives = 37/136 (27%), Gaps = 15/136 (11%)
Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 387
QT S ++ F P + G D T +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDD----------ATCRLFDLRADQELMTYSHDNI 269
Query: 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ 447
+ V +S G LL Y ++ + + H V+ L +
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTDDGMA 326
Query: 448 ISVITCGDDKTIKVWD 463
+ T D +K+W+
Sbjct: 327 V--ATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.3 bits (147), Expect = 2e-10
Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 8/155 (5%)
Query: 843 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 902
D + G D++ +++ R GH + + F N + DA
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 903 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET-HLAIYEAEELTC 961
++D+ S +T + F K L ++ + +++A +
Sbjct: 251 RLFDLRADQELMTYSHDNIICGIT------SVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Query: 962 LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 996
+S + D V T D L I
Sbjct: 305 AGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.2 bits (139), Expect = 2e-09
Identities = 40/293 (13%), Positives = 95/293 (32%), Gaps = 11/293 (3%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+ + W D LL A + ++ + + I V A++ ++
Sbjct: 57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA---IPLRSSWVMTCAYAPSGNYVA 113
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
+ +I G+ S E G Y + + I + S D W +
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYL-SCCRFLDDNQIVTSSGDTTCALWDIE 172
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ + ++ + + R S ++ W+ EG ++T+ G
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSG----ACDASAKLWDVREGMCRQTFTG---H 225
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 629
+ ++ + F + DD +++D+ Q L T + + F+K+G LL
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 630 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 682
++ + + +++ + + L V G + + +
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.8 bits (138), Expect = 3e-09
Identities = 26/217 (11%), Positives = 66/217 (30%), Gaps = 10/217 (4%)
Query: 424 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 483
R + + H+ + + + + + ++ D + +WD+ T ++ ++ + V +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLL--VSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543
+ +++ +D + + V G T TS
Sbjct: 104 AYA--PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 544 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 603
+ + E+ V + ++ D K+WD+ +
Sbjct: 162 GDTTCALWDIETGQQTTTFTG----HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217
Query: 604 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 640
T ICF NG A +++ ++
Sbjct: 218 CRQTFTGHESDINA--ICFFPNGNAFATGSDDATCRL 252
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.0 bits (110), Expect = 8e-06
Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 11/130 (8%)
Query: 817 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI--YNARSSEVISKL 874
L+ V T ++ F P + N A G DD+T + A +
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSH 266
Query: 875 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 934
+ +T + FS + +L++ D VWD L D + + +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--DRAGVLAGHDNRV------SCL 318
Query: 935 QFHKDQTRFL 944
D
Sbjct: 319 GVTDDGMAVA 328
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.5 bits (184), Expect = 4e-15
Identities = 43/311 (13%), Positives = 86/311 (27%), Gaps = 65/311 (20%)
Query: 429 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 488
+ H V + F + ++ +D TIKVWD TG + +GH V +
Sbjct: 13 LSGHRSPVTRVIFHPVFSVM--VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70
Query: 489 ENIH----------------------------------------FIFSISVDGKIKAWLY 508
+ I S S D IK W
Sbjct: 71 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 509 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 568
+ + + + +G + SC + + W + K + +
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ----TVRVWVVATKECKAELREHRH 186
Query: 569 QHNSVS-----------------VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 611
+S +L+ D IK+WD++ L T+
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246
Query: 612 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 671
+ F+ G + A++ +++ + + + L + +
Sbjct: 247 DNWVRG--VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304
Query: 672 GAGIANGSVSV 682
G + +V V
Sbjct: 305 VTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.2 bits (178), Expect = 2e-14
Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 8/174 (4%)
Query: 734 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 793
N G I + +++ +W + V + +++ T S
Sbjct: 151 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE- 209
Query: 794 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 852
K +L S S I ++ V T ++T++ + F+ I
Sbjct: 210 -----TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFIL 263
Query: 853 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906
DD T+ +++ ++ + L H VT L F +V+ D + VW+
Sbjct: 264 SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 72.9 bits (177), Expect = 2e-14
Identities = 46/325 (14%), Positives = 92/325 (28%), Gaps = 61/325 (18%)
Query: 323 PKTVAQTLIEGSSSP-MSMDFHPVQHTLLLG-------LWDVNSGQKL------------ 362
P+ + + G SP + FHPV ++ +WD +G
Sbjct: 5 PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 64
Query: 363 -----------FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 411
+ + +V+ V P+G + A
Sbjct: 65 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 124
Query: 412 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 471
++++ H V + + I +C +D+T++VW T
Sbjct: 125 IKMWEVQ---TGYCVKTFTGHREWVRMVRPNQDGTLI--ASCSNDQTVRVWVVATKECKA 179
Query: 472 SFEGHGAPVYSLCPHAKENI------------------HFIFSISVDGKIKAWLYDSLGA 513
H V + + + F+ S S D IK W +
Sbjct: 180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 239
Query: 514 RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 573
+ + + + G+ + SC K L W+ +T + V
Sbjct: 240 LMTLVGHDNWVRGVLFHSGGKFILSCADDKT----LRVWDYKNKRCMKTLNA---HEHFV 292
Query: 574 SVVHFDTAKDQILAAGDDHVIKIWD 598
+ + F ++ D +K+W+
Sbjct: 293 TSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.1 bits (136), Expect = 4e-09
Identities = 25/167 (14%), Positives = 56/167 (33%), Gaps = 28/167 (16%)
Query: 798 PCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNP----------- 845
+++ + S S + +++V T + + +++ P
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206
Query: 846 --------HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 897
+ G D TI +++ + + L GH V G++F ++S
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266
Query: 898 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 944
D + VWD + ++L + + T + FHK +
Sbjct: 267 DDKTLRVWDYKNK--RCMKTLNAHEHFV------TSLDFHKTAPYVV 305
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.2 bits (113), Expect = 3e-06
Identities = 17/170 (10%), Positives = 54/170 (31%), Gaps = 9/170 (5%)
Query: 839 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 898
T + F+P +V+ +D+TI +++ + + L+GH+ V + F + +
Sbjct: 21 TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL------ 73
Query: 899 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 958
+ + + + + + + + + +
Sbjct: 74 --LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131
Query: 959 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1008
+ F + + D ++ + D T+ + + E + +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.7 bits (109), Expect = 1e-05
Identities = 31/187 (16%), Positives = 54/187 (28%), Gaps = 20/187 (10%)
Query: 863 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 922
+ R E + L GH VT ++F +++VS+ DA I VWD + R+L+
Sbjct: 3 WIPRPPEKYA-LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHT 59
Query: 923 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC 982
S I F + + +S + +
Sbjct: 60 D------SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113
Query: 983 RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1042
+ ++ D T+ + E T H + T A
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVK-----------TFTGHREWVRMVRPNQDGTLIASCS 162
Query: 1043 TNGEVYV 1049
+ V V
Sbjct: 163 NDQTVRV 169
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.1 bits (175), Expect = 8e-14
Identities = 44/398 (11%), Positives = 116/398 (29%), Gaps = 54/398 (13%)
Query: 530 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH-NSVSVVHFDTAKDQILAA 588
+ + + + + +++ +N + L H + V V F + LA
Sbjct: 22 DLDSQSVPDALKKQTNDYYIL-YNPALPREIDVELHKSLDHTSVVCCVKFS-NDGEYLAT 79
Query: 589 GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 648
G + +++ ++ L+ + ++P E+ +
Sbjct: 80 GCNKTTQVYRVSDGSLVARLSDDSAANKDP--------------------------ENLN 113
Query: 649 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 708
++ +R + +P G +A G+ + +I + + + L
Sbjct: 114 TSSSPSSDLYIRSVCFSP----DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 169
Query: 709 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 768
PS + + T V + + S +
Sbjct: 170 DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 229
Query: 769 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-------------GG 815
+V + + + + +++V +++ + S S
Sbjct: 230 RVWD-SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 288
Query: 816 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 875
+ +T + S+A ++ I G D +L ++ +S + L+
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347
Query: 876 GHSKRVTGLVFSDAL------NILVSSGGDAQIFVWDV 907
GH V + ++ N+ + GD + +W
Sbjct: 348 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.0 bits (172), Expect = 2e-13
Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 15/130 (11%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV---------GNVNDLA 440
SV VV++ DG + V+L+ ++ ++ V +A
Sbjct: 256 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 315
Query: 441 FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH----FIFS 496
+ + I ++ D+ + WD +G+ +GH V S+ ++ +
Sbjct: 316 TTQNDEYI--LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373
Query: 497 ISVDGKIKAW 506
S D K + W
Sbjct: 374 GSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.2 bits (157), Expect = 2e-11
Identities = 39/335 (11%), Positives = 102/335 (30%), Gaps = 30/335 (8%)
Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLG------LWDVNSGQKLFIRNFKVWDIGACSMLFKT 381
++ +S + F L G ++ V+ L R T
Sbjct: 56 HKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSD-GSLVARLSDDSAANKDPENLNT 114
Query: 382 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441
+ + + V +SPDG L +++++ +++ + + +
Sbjct: 115 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE-----NRKIVMILQGHEQDIYSL 169
Query: 442 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG 501
+++ D+T+++WD TG + + +I + S+D
Sbjct: 170 DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK--YIAAGSLDR 227
Query: 502 KIKAWLYDSLGARVDYDAPGL-------GCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 554
++ W ++ D+ + ++ +G+ + S + + + ++
Sbjct: 228 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 287
Query: 555 SEGAIKRTYQGLQLQH-----NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 609
++ K G + V V + IL+ D + WD L +
Sbjct: 288 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347
Query: 610 AGGG----LPENPRICFNKNGTLLAVIANENRIKI 640
+ + A + + + +I
Sbjct: 348 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.8 bits (156), Expect = 2e-11
Identities = 36/181 (19%), Positives = 61/181 (33%), Gaps = 28/181 (15%)
Query: 444 PCKQISVITCGDDKTIKVWDAVTG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFS 496
P + D+ ++VWD+ TG S S GH VYS+ + S
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ--SVVS 271
Query: 497 ISVDGKIKAWLYDSLGARVDYDAPGLGC------------TRMAYSANGRRLFSCGTSKE 544
S+D +K W + + D P G +A + N + S +
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331
Query: 545 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH---FDTAKDQILAAGDDHVIKIWDMNK 601
++ W++ G QG + SV+V + + D +IW K
Sbjct: 332 ----VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387
Query: 602 V 602
+
Sbjct: 388 I 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.9 bits (125), Expect = 1e-07
Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 17/171 (9%)
Query: 843 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-------GHSKRVTGLVFSDALNILVS 895
+P D IA G D + ++++ + ++ +L+ GH V +VF+ +VS
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271
Query: 896 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH----IQFHKDQTRFLLVHETH- 950
D + +W++ ++ + ++ L +
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331
Query: 951 LAIYEAEELTCLKQW----FPISSVPISQ-ATFSCDCRMVFTSFVDGTLSI 996
+ ++ + L + SV ++ ++ + + T D I
Sbjct: 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.1 bits (110), Expect = 7e-06
Identities = 37/284 (13%), Positives = 82/284 (28%), Gaps = 28/284 (9%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIV--------QLYAYHGGSDARQQLEI------DAHVGN 435
V V +S DG L +K + S A + E +
Sbjct: 64 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123
Query: 436 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF 495
+ + FS K + T +D+ I++WD +GH +Y + +
Sbjct: 124 IRSVCFSPDGKFL--ATGAEDRLIRIWDIENRKIVMILQGHEQDIY--SLDYFPSGDKLV 179
Query: 496 SISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 555
S S D ++ W + + T +G+ + + + + E
Sbjct: 180 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 239
Query: 556 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 615
+ + +SV V F +++ D +K+W++ +
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299
Query: 616 ENP----------RICFNKNGTLLAVIANENRIKILETPESNSV 649
+ +N + + + + + N +
Sbjct: 300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.7 bits (96), Expect = 4e-04
Identities = 45/295 (15%), Positives = 100/295 (33%), Gaps = 21/295 (7%)
Query: 774 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP 833
LY P + V + V C S + YL + +Y V + +
Sbjct: 42 LYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSD 101
Query: 834 PSPTA------------------TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 875
S S+ F+P D +A G +D I I++ + +++ L+
Sbjct: 102 DSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQ 160
Query: 876 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 935
GH + + L + + + LVS GD + +WD+ S++ + ++P +
Sbjct: 161 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 220
Query: 936 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLS 995
R + V ++ + E L + + F+ D + V + +D ++
Sbjct: 221 AAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279
Query: 996 IHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF-AVGLTNGEVYV 1049
+ N + + + + ++ + ++ G + V
Sbjct: 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (92), Expect = 0.001
Identities = 32/221 (14%), Positives = 58/221 (26%), Gaps = 7/221 (3%)
Query: 833 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS----KLEGHSKRVTGLVFSD 888
P P L + + ++YN I K H+ V + FS+
Sbjct: 14 KPIPPF-LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN 72
Query: 889 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 948
L + G + V+ V + S + + + R +
Sbjct: 73 DGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 131
Query: 949 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1008
+ E ++ W + + F G + + + V+
Sbjct: 132 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 191
Query: 1009 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1049
L T T S +A P A G + V V
Sbjct: 192 LRTGQCSLTLSIEDGVTT-VAVSPGDGKYIAAGSLDRAVRV 231
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.7 bits (166), Expect = 1e-12
Identities = 28/184 (15%), Positives = 62/184 (33%), Gaps = 5/184 (2%)
Query: 839 TSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVISKLEGHSKRVTGLVFSDALNILVSS 896
+ A+N D IAI ++ + IY + + +L+ H+ +VTG+ ++ N +V+
Sbjct: 11 SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 897 GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 956
G D +VW + G + + + + + + + +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS--RVISICYFEQE 127
Query: 957 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1016
+ K + + + ++ D I A EV+ R T +
Sbjct: 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 187
Query: 1017 TTSC 1020
Sbjct: 188 MPFG 191
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.6 bits (158), Expect = 9e-12
Identities = 38/257 (14%), Positives = 73/257 (28%), Gaps = 20/257 (7%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
++ W+ D + + + + H V +Y G Q E+ H G V + ++ +I
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRI- 66
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
+TCG D+ VW + + + C N S I ++
Sbjct: 67 -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 510 SLGARVDYDAPGLGCTRMAYSANGR---------------RLFSCGTSKEGESFLVEWNE 554
S + R+FS + E
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 555 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 614
S+ V V F ++ D + + D +K + T+ +
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL- 244
Query: 615 PENPRICFNKNGTLLAV 631
+ F +L+A
Sbjct: 245 -PLLAVTFITESSLVAA 260
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.2 bits (110), Expect = 7e-06
Identities = 35/275 (12%), Positives = 77/275 (28%), Gaps = 25/275 (9%)
Query: 337 PMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVW----DIGACSMLFKTALVRDPGVSVN 392
P F + ++ + ++ + + + L+
Sbjct: 105 PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164
Query: 393 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT 452
++S + + E + G V+ + FSA ++
Sbjct: 165 CRIFSAYIKEV----EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV--AW 218
Query: 453 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG 512
D T+ + DA + P+ ++ + ++ + D + YDS
Sbjct: 219 VSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSL---VAAGHDCFPVLFTYDSAA 275
Query: 513 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 572
++ + + + R K+ S EG+ L NS
Sbjct: 276 GKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS--------EGSAAAGAGLDSLHKNS 327
Query: 573 VSVVHF----DTAKDQILAAGDDHVIKIWDMNKVQ 603
VS + Q G D + IWD+ ++
Sbjct: 328 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 11/114 (9%), Positives = 29/114 (25%), Gaps = 6/114 (5%)
Query: 799 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 858
+ + + L+ + L+ + +D
Sbjct: 248 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307
Query: 859 TILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVD 908
+A + + H V+ + + ++G D + +WDV
Sbjct: 308 ASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.5 bits (90), Expect = 0.002
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 420 GSDARQQLEIDAHVGNVNDLAFSAPCKQIS--VITCGDDKTIKVWDAVTGSRT 470
GS A H +V+ ++ + K T G D + +WD +
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.1 bits (159), Expect = 6e-12
Identities = 48/365 (13%), Positives = 111/365 (30%), Gaps = 32/365 (8%)
Query: 560 KRTYQGLQLQHNS--VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 617
+ T +G H + ++ + F+ + ++ DD +I+++D + L + G
Sbjct: 5 RTTLRG----HMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWA 58
Query: 618 PRICFNKNGTLLAV-IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 676
+ + G L++ R+ ++ V + + G
Sbjct: 59 --LKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 116
Query: 677 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNN 736
+ ++ V + PKE P+ E + PL E + R +
Sbjct: 117 DNTLHVWKLPKESSVPDHG------EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 170
Query: 737 GGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT------ 789
G + N + + + LS R DTT
Sbjct: 171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 230
Query: 790 -----DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 844
Q L + ++ S+ +++
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 290
Query: 845 PHDNNVIAIGMDDSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 903
+N++ G ++ IYN RS +++ + + + ++ + F ++ + D Q F
Sbjct: 291 YVSDNILVSGSEN-QFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSF 348
Query: 904 VWDVD 908
+ +D
Sbjct: 349 LEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.0 bits (138), Expect = 3e-09
Identities = 10/79 (12%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 432 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKEN 490
H N++ + I + G + +++ +G ++ ++S+ K
Sbjct: 280 HHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335
Query: 491 IHFIFSISVDGKIKAWLYD 509
+ ++ DG+ + D
Sbjct: 336 -TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 9/149 (6%)
Query: 839 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 898
T L F ++N + G DD I +Y++ + + + +L GH V L ++ ILVS
Sbjct: 17 TCLQF---EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGST 72
Query: 899 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 958
D + VWD+ +++ + + L +++ +
Sbjct: 73 DRTVRVWDIKKGCCTHVFEGHNSTVRCL-----DIVEYKNIKYIVTGSRDNTLHVWKLPK 127
Query: 959 LTCLKQWFPISSVPISQATFSCDCRMVFT 987
+ + P+ T + V
Sbjct: 128 ESSVPDHGEEHDYPLVFHTPEENPYFVGV 156
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.7 bits (114), Expect = 2e-06
Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 8/151 (5%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
VIT DDK I+V+D++ GH V++L + + S S D ++ W
Sbjct: 26 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA---HGGILVSGSTDRTVRVWDIK 82
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
++ + + S++ + W + + + +
Sbjct: 83 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV--WKLPKESSVPDHGE---E 137
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 600
H+ V H + H+ + ++
Sbjct: 138 HDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.003
Identities = 40/323 (12%), Positives = 88/323 (27%), Gaps = 30/323 (9%)
Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 387
L ++ + L+ G D + + + + +
Sbjct: 47 LQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 105
Query: 388 GVSVNRVVWSPDGSL----------LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVN 437
V S D +L + +H L + + + H+ +V
Sbjct: 106 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 165
Query: 438 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 497
V++ D T+ VWD Y GH +Y S
Sbjct: 166 T----VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY--STIYDHERKRCISA 219
Query: 498 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557
S+D I+ W + + + + G S +
Sbjct: 220 SMDTTIRIWDL--------ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAN 271
Query: 558 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 617
R + ++++ + D IL +G ++ I+++ +L+
Sbjct: 272 DYSRKFSYHHTNLSAITTFYVS---DNILVSGSENQFNIYNLRSGKLVHANILKDADQIW 328
Query: 618 PRICFNKNGTLLAVIANENRIKI 640
+ F TL+A + + + +
Sbjct: 329 -SVNFK-GKTLVAAVEKDGQSFL 349
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.004
Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 395 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 454
+ + + ++++Y + L++ H G V L ++ +++
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGGI---LVSGS 71
Query: 455 DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506
D+T++VWD G T+ FEGH + V L +NI +I + S D + W
Sbjct: 72 TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.2 bits (149), Expect = 8e-11
Identities = 32/314 (10%), Positives = 84/314 (26%), Gaps = 17/314 (5%)
Query: 335 SSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 394
+ + + P + + G+ F+R D G + V V
Sbjct: 18 NFTTHLSYDPTTNAIAYP-----CGKSAFVR---CLDDGDSKVPPVVQFTGHGSSVVTTV 69
Query: 395 VWSP--DGSLLGVAYSKHIVQLYAYHGGSDARQQL-----EIDAHVGNVNDLAFSAPCKQ 447
+SP L V ++ + ++ E G ++D+++ ++
Sbjct: 70 KFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR 129
Query: 448 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 507
+ V+ G D +G+ GH + + + + +
Sbjct: 130 LCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG 189
Query: 508 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 567
+ D G + + + + ++ G + + Q
Sbjct: 190 PPFKFSASDRTHHKQGSFVRDVEFSPDS-GEFVITVGSDRKISCFDGKSGEFLKYIEDDQ 248
Query: 568 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 627
+ G D I++WD+ + + N ++ G
Sbjct: 249 EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN 308
Query: 628 -LLAVIANENRIKI 640
+ ++ + +
Sbjct: 309 GRIISLSLDGTLNF 322
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 450 VITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506
T G D TI+VWD T + ++ + + A N I S+S+DG + +
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.1 bits (115), Expect = 1e-06
Identities = 28/168 (16%), Positives = 50/168 (29%), Gaps = 10/168 (5%)
Query: 827 TILTIMPPSP-----TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGH-S 878
++ I+PP P T L+++P N + + + + S+V + + GH S
Sbjct: 4 SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63
Query: 879 KRVTGLVFSDALN--ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 936
VT + FS L S ++ VW + LA + I +
Sbjct: 64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123
Query: 937 HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM 984
+ R +V E +S
Sbjct: 124 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR 171
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (111), Expect = 5e-06
Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 844 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL---VFSDALNILVSSGGDA 900
+ D+ A D+TI +++ +S+ + K +++ V + ++S D
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318
Query: 901 QIFVWDV 907
+ +++
Sbjct: 319 TLNFYEL 325
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 2e-10
Identities = 46/369 (12%), Positives = 116/369 (31%), Gaps = 42/369 (11%)
Query: 552 WNESEGAIKRTYQGLQLQHNS--VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 609
W E + +G H+ ++ + F ++I++ DD+ +K+W + L T+
Sbjct: 1 WRRGELKSPKVLKG----HDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLV 54
Query: 610 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 669
++ + + +K+ + + +R + ++
Sbjct: 55 G----HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV 110
Query: 670 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 729
V+G+ A V E + V A + + + +
Sbjct: 111 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV----------- 159
Query: 730 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 789
++ + L + + +S T + R++ G
Sbjct: 160 -KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSI--RVWDVETGNCIHTLTGH 216
Query: 790 DSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 848
S + D L S + + ++ + T + + T+ P+ +++ +
Sbjct: 217 QS------LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 270
Query: 849 NVIAIGMDDSTILIYNARSSEVISKL-----EGHSKRVTGLVFSDALNILVSSGGD---- 899
N + DD T+ +++ ++ E I L G V + S+ + +
Sbjct: 271 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 330
Query: 900 AQIFVWDVD 908
++ V D D
Sbjct: 331 TKLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 3e-09
Identities = 33/245 (13%), Positives = 69/245 (28%), Gaps = 32/245 (13%)
Query: 421 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 480
+ + + H +V C +++ DD T+KVW AVTG + GH V
Sbjct: 4 GELKSPKVLKGHDDHVIT-CLQ-FCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60
Query: 481 YSLC-----PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 535
+S + + + + + V R
Sbjct: 61 WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120
Query: 536 LFSCGTSKEGESF---------------LVEWNESEGAIK-----RTYQGLQLQHNSVSV 575
++ T + V + +K LQ ++ V
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 180
Query: 576 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 635
+++ D I++WD+ + T+ ++ +L +
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG----HQSLTSGMELKDNILVSGNAD 236
Query: 636 NRIKI 640
+ +KI
Sbjct: 237 STVKI 241
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.1 bits (136), Expect = 4e-09
Identities = 54/296 (18%), Positives = 103/296 (34%), Gaps = 31/296 (10%)
Query: 353 LWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 412
+W +G+ +R G S + ++ VW+ + H
Sbjct: 41 VWSAVTGK--CLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTS 98
Query: 413 QLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS--------------VITCGDDKT 458
+ H DA + + + V++ D
Sbjct: 99 TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM 158
Query: 459 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 518
+KVWD T + ++ +GH VYSL + S S+D I+ W ++ +
Sbjct: 159 VKVWDPETETCLHTLQGHTNRVYSLQFDGI----HVVSGSLDTSIRVWDVET--GNCIHT 212
Query: 519 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF 578
G L S +S + W+ G +T QG ++V+ + F
Sbjct: 213 LTGHQSLTSGMELKDNILVSG----NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 268
Query: 579 DTAKDQILAAGDDHVIKIWDMNK---VQLLTTIDAGGGLPENPRICFNKNGTLLAV 631
+ K+ ++ + DD +K+WD+ ++ L T+++GG RI + + AV
Sbjct: 269 N--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV 322
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 1e-06
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 13/158 (8%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
V++ D +I+VWD TG+ ++ GH + + + + S + D +K W
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD----NILVSGNADSTVKIWDIK 245
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ P + + + S +G L W+ G R L+
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-SDDGTVKL--WDLKTGEFIRNLVTLESG 302
Query: 570 H--NSVSVVHFDTAKDQILAAGDDH----VIKIWDMNK 601
V + K + + + D +
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (94), Expect = 6e-04
Identities = 29/204 (14%), Positives = 60/204 (29%), Gaps = 27/204 (13%)
Query: 846 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 905
N I G DD+T+ +++A + + + L GH+ V D NI++S D + VW
Sbjct: 25 FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVW 82
Query: 906 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQW 965
+ + T + + +D T + E +
Sbjct: 83 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE------------TGQCL 130
Query: 966 FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1025
+ + D R V + D + + + L +
Sbjct: 131 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT-------------LQGHT 177
Query: 1026 HAIAAHPLKPTQFAVGLTNGEVYV 1049
+ + + G + + V
Sbjct: 178 NRVYSLQFDGIHVVSGSLDTSIRV 201
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 61.3 bits (147), Expect = 2e-10
Identities = 36/361 (9%), Positives = 85/361 (23%), Gaps = 29/361 (8%)
Query: 578 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE- 635
+ ++ + + + D+ + + P + V+ N
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNNHY 61
Query: 636 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG----IANGSVSVNEDPKEDVK 691
I ++ + A + S ++ G D
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 692 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 751
P + V + KP+ P Q L+ + +
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRA---------------ADDGSLYVAGPDIY 166
Query: 752 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 811
T++ P + S +
Sbjct: 167 KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA 226
Query: 812 ASGGVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 870
+ T KT + + +P D N I + + Y+ + ++
Sbjct: 227 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY--GVLNRLAKYDLKQRKL 284
Query: 871 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 930
I + F + L G + V++ D + ++++ P G M+
Sbjct: 285 IKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL--EKVKNIKLPGGDMSTTTP 341
Query: 931 E 931
+
Sbjct: 342 Q 342
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 50.1 bits (118), Expect = 8e-07
Identities = 31/314 (9%), Positives = 73/314 (23%), Gaps = 32/314 (10%)
Query: 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACS---MLFK 380
++ P + P T + D+ C
Sbjct: 29 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD--------IYGIDLDTCKNTFHANL 80
Query: 381 TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-----------RQQLEI 429
+++ + G S+ SPDG + + Y + +
Sbjct: 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT 140
Query: 430 DAHVGNVNDLAFSAPCKQI------SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 483
V + + + K +R +
Sbjct: 141 FPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPH 200
Query: 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543
E + L G T A+ L+ G
Sbjct: 201 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRS 260
Query: 544 EGESFLVEWNESEGAI--KRTYQGLQ--LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 599
+ + + A + + ++ ++ V FD D++ G + + +++
Sbjct: 261 PKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP 320
Query: 600 NKVQLLTTIDAGGG 613
+ ++ + I GG
Sbjct: 321 DTLEKVKNIKLPGG 334
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 38.6 bits (88), Expect = 0.003
Identities = 20/186 (10%), Positives = 43/186 (23%), Gaps = 14/186 (7%)
Query: 439 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSI 497
A A + + I + V D + + S + ++
Sbjct: 2 PALKAGHEYM--IVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV-LN 58
Query: 498 SVDGKIKAW------LYDSLGARVDYDAPGLGCTRMAYSANGRRLF--SCGTSKEGESFL 549
+ G I G A S +G+ ++ T + + ++
Sbjct: 59 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118
Query: 550 VEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 607
V+ E + V+ A D I D+ +
Sbjct: 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVA 178
Query: 608 IDAGGG 613
+
Sbjct: 179 LPLRNW 184
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.8 bits (135), Expect = 5e-09
Identities = 32/153 (20%), Positives = 50/153 (32%), Gaps = 18/153 (11%)
Query: 452 TCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 511
+ D+TIKVW+ T + GH + L + S S D I+ W D
Sbjct: 153 SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD----RLVVSGSSDNTIRLW--DIE 206
Query: 512 GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH- 570
G + +R+ S + + W+ R G
Sbjct: 207 CGACLRVLEGHEELVRCIRFDNKRIVSG----AYDGKIKVWDLVAALDPRAPAGTLCLRT 262
Query: 571 -----NSVSVVHFDTAKDQILAAGDDHVIKIWD 598
V + FD + QI+++ D I IWD
Sbjct: 263 LVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (127), Expect = 4e-08
Identities = 32/209 (15%), Positives = 61/209 (29%), Gaps = 20/209 (9%)
Query: 432 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 491
V L + +++ D TIK+WD T GH V L + I
Sbjct: 14 TSKGVYCLQYDDQ----KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69
Query: 492 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 551
+V +A + S
Sbjct: 70 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV---------- 119
Query: 552 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 611
W+ + L + +V D I++A D IK+W+ + + + T++
Sbjct: 120 WDMAS--PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG- 176
Query: 612 GGLPENPRICFNKNGTLLAVIANENRIKI 640
+ C L+ +++N I++
Sbjct: 177 ---HKRGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (120), Expect = 4e-07
Identities = 28/151 (18%), Positives = 43/151 (28%), Gaps = 25/151 (16%)
Query: 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR 424
R KVW+ C + G L+ S + ++L+ D
Sbjct: 158 RTIKVWNTSTCEFVRTL-----NGHKRGIACLQYRDRLVVSGSSDNTIRLW------DIE 206
Query: 425 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY---------SFEG 475
+ G+ +L +++ D IKVWD V +
Sbjct: 207 CGACLRVLEGH-EELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE 265
Query: 476 HGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506
H V+ L I S S D I W
Sbjct: 266 HSGRVFRLQFDEF----QIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.2 bits (110), Expect = 5e-06
Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 15/119 (12%)
Query: 798 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 856
L D + S S I L+ + + + DN I G
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR---CIRFDNKRIVSGAY 236
Query: 857 DSTILIYNARSSE---------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906
D I +++ ++ + L HS RV L F + +VSS D I +WD
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 3e-05
Identities = 27/211 (12%), Positives = 62/211 (29%), Gaps = 27/211 (12%)
Query: 839 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 898
L + D+ I G+ D+TI I++ + E L GH+ V L + + + I
Sbjct: 19 YCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII------ 69
Query: 899 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 958
D + + + + +A+++
Sbjct: 70 -----TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124
Query: 959 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1018
T + + + D + + ++ D T+ + S E
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR------------ 172
Query: 1019 SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1049
L+ + IA + G ++ + +
Sbjct: 173 -TLNGHKRGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 20/134 (14%), Positives = 35/134 (26%), Gaps = 24/134 (17%)
Query: 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 395
++ G D ++WDI + L G
Sbjct: 178 KRGIACLQYRDRLVVSGSSD---------NTIRLWDIECGACLRV-----LEGHEELVRC 223
Query: 396 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE------IDAHVGNVNDLAFSAPCKQIS 449
D + ++++ D R + H G V L F
Sbjct: 224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF----Q 279
Query: 450 VITCGDDKTIKVWD 463
+++ D TI +WD
Sbjct: 280 IVSSSHDDTILIWD 293
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (134), Expect = 7e-09
Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 9/117 (7%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+ + + P G + + + + ++ H V L F+ K
Sbjct: 226 QIFSLGYCPTGEW----LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWF- 280
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506
++ G D + W G+ + + V S + +I + S D K +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK--YIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (134), Expect = 9e-09
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 840 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 899
SL F D+ + + I + S V S +V+ GD
Sbjct: 270 SLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGD 327
Query: 900 AQIFVWDV 907
+ V++V
Sbjct: 328 KKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 2e-07
Identities = 31/275 (11%), Positives = 73/275 (26%), Gaps = 19/275 (6%)
Query: 368 KVWDIGACSMLFKTALVRDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 425
KVWDI + + + PDG L V + ++ + +
Sbjct: 75 KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134
Query: 426 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 485
+ S + G+ + + +T + G + C
Sbjct: 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCI 189
Query: 486 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 545
+ +++ +D +++W +D + Y G L S
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNV 248
Query: 546 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 605
E V L L + V + F ++ G D+++ W +
Sbjct: 249 EVLHVNKP--------DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300
Query: 606 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 640
+ + + + + + + +
Sbjct: 301 FQSKESSSV---LSCDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 394 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 453
+ ++ G +++ + G + +V S K I +T
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYG----ASIFQSKESSSVLSCDISVDDKYI--VTG 324
Query: 454 GDDKTIKVWD 463
DK V++
Sbjct: 325 SGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 1e-05
Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 14/111 (12%)
Query: 379 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 438
F+ A+ P S + + DG + V + + G +Q+ H V
Sbjct: 3 FQGAMGSKPAYSFH---VTADGQMQPVPFPPDAL---IGPGIPRHARQINTLNHGEVVCA 56
Query: 439 LAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHGAPVYSLC 484
+ S P + + G +KVWD + S
Sbjct: 57 VTISNPTRHVY---TGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK 104
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 0.001
Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 5/129 (3%)
Query: 856 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 915
D+ I R + I+ L H + V + S+ + + GG + VWD+ G ++
Sbjct: 30 PDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSP 87
Query: 916 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQ 975
S + D ++ E + ++S +
Sbjct: 88 VSQLDCLNRDNYI---RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144
Query: 976 ATFSCDCRM 984
+
Sbjct: 145 YALAISPDS 153
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 0.002
Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 8/75 (10%)
Query: 524 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 583
+ ++ G+ S G L W GA + +SV
Sbjct: 268 VLSLKFAYCGKWFVSTGKDN----LLNAWRTPYGASIFQSKE----SSSVLSCDISVDDK 319
Query: 584 QILAAGDDHVIKIWD 598
I+ D +++
Sbjct: 320 YIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 0.004
Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 3/68 (4%)
Query: 798 PCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 856
+ + S +++ + +I S S + D+ I G
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS-VLSCDISV-DDKYIVTGSG 326
Query: 857 DSTILIYN 864
D +Y
Sbjct: 327 DKKATVYE 334
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.4 bits (131), Expect = 1e-08
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 832 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDAL 890
+ P + +++A G D+ I IY+ + ++I L H V L++
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP- 269
Query: 891 NILVSSGGDAQIFVWDV 907
+ LVSSG DA I W+V
Sbjct: 270 STLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 2e-06
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 429 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 488
I H + L + +I+ D I W + + + H + SL
Sbjct: 9 ISGHNKGITALTVN------PLISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA 57
Query: 489 ENIHFIFS 496
+ I
Sbjct: 58 QEYSSISW 65
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.0 bits (104), Expect = 3e-05
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 4/57 (7%)
Query: 451 ITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506
T D I ++ + H V +L + S D IK W
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP---STLVSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.9 bits (96), Expect = 3e-04
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 429 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 465
++AH VN+L + P +++ G D IK W+ V
Sbjct: 254 LNAHKDGVNNLLWETPST---LVSSGADACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.1 bits (94), Expect = 5e-04
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 869 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 908
EV+ + GH+K +T L + L+S D +I W
Sbjct: 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSS 39
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.2 bits (89), Expect = 0.002
Identities = 28/248 (11%), Positives = 61/248 (24%), Gaps = 34/248 (13%)
Query: 839 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 898
T+L NP + G D I+ +++ S + HS + L S A S
Sbjct: 17 TALTVNP-----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQEYSSISWD 66
Query: 899 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLA------ 952
D + + T + ++ L
Sbjct: 67 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 126
Query: 953 ------------------IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL 994
+++ +L S + S + V G +
Sbjct: 127 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKI 186
Query: 995 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054
+++ + EV+ + + ++ A G + +++
Sbjct: 187 LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 246
Query: 1055 PGDTWAVL 1062
P L
Sbjct: 247 PMKIIKAL 254
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.0 bits (133), Expect = 1e-08
Identities = 29/318 (9%), Positives = 78/318 (24%), Gaps = 31/318 (9%)
Query: 339 SMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 398
+ P + LL+ WD + V+ + + +
Sbjct: 16 DIKIIPSKSLLLITSWD---------GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66
Query: 399 D-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 457
+ + V + + G + +A++G + + +
Sbjct: 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126
Query: 458 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG----- 512
+ + V + N + + +++ +
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186
Query: 513 ---------ARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESEGAIKRT 562
R P S +GR + + + + +
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246
Query: 563 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 622
L NS+ F + AG D +I W++ + + E+ +
Sbjct: 247 DTNLAYPVNSIE---FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN---EDSVVKI 300
Query: 623 NKNGTLLAVIANENRIKI 640
+ +L + +++ K
Sbjct: 301 ACSDNILCLATSDDTFKT 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 21/265 (7%), Positives = 55/265 (20%), Gaps = 14/265 (5%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
++ + P SLL + + +Y + + L+ + + F
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
+ + +KV + S ++ S ++
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-L 568
G + S S + + L
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192
Query: 569 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR--------- 619
++ V ++ + D + + + +
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 620 ----ICFNKNGTLLAVIANENRIKI 640
I F+ L ++ I
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISC 277
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (111), Expect = 5e-06
Identities = 19/129 (14%), Positives = 35/129 (27%), Gaps = 19/129 (14%)
Query: 391 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVND 438
+ + + + V + + D R L+ VN
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256
Query: 439 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSI 497
+ FS K + T G D I W+ T + +F + V + +
Sbjct: 257 IEFSPRHKFL--YTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN----ILCLA 310
Query: 498 SVDGKIKAW 506
+ D K
Sbjct: 311 TSDDTFKTN 319
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
Query: 833 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE---GHSKRVTGLVFSDA 889
P + + P +++ I D ++ +Y L + + F D
Sbjct: 9 APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 890 LNILVSSGGDAQIFVW 905
++ + G +
Sbjct: 68 TDLQIYVGTVQGEILK 83
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 6/62 (9%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 869 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMT 926
+++ + ++ + + ++L+ + D + V+ D + +SL+ ++
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 927 LA 928
Sbjct: 62 CN 63
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 54.4 bits (129), Expect = 3e-08
Identities = 36/329 (10%), Positives = 83/329 (25%), Gaps = 22/329 (6%)
Query: 582 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-NRIKI 640
+D ILA + + D K+ + I P G + N+ +
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60
Query: 641 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 700
++ L +ST + +++ D K E V E
Sbjct: 61 IDL-------------VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL 107
Query: 701 KSEV-EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 759
+ A + +I+ L + G ++ G L P
Sbjct: 108 THFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLY---GLGRDLHVMDPEAG 164
Query: 760 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISL 819
+ + Y + + A + G++++
Sbjct: 165 TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224
Query: 820 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 879
+ + + S A NP + + ++ + I ++
Sbjct: 225 DLETGEMAMREVRIMDVFYFSTAVNPAKT---RAFGAYNVLESFDLEKNASIKRVP-LPH 280
Query: 880 RVTGLVFSDALNILVSSGGDAQIFVWDVD 908
+ S + + G + +D +
Sbjct: 281 SYYSVNVSTDGSTVWLGGALGDLAAYDAE 309
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.1 bits (123), Expect = 2e-07
Identities = 26/300 (8%), Positives = 75/300 (25%), Gaps = 29/300 (9%)
Query: 368 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQ 425
V D ++ K + D G + + +P G + S+ +V++ G + R
Sbjct: 14 VVIDTEKMAVD-KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72
Query: 426 QLEIDAHVGNV-NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 484
L A S K +++ + ++ + +
Sbjct: 73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132
Query: 485 PHAK-------ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 537
+ + ++ + D + +L +
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192
Query: 538 SCGTSKEGESFLVEWNESEGAIKRTYQGL-------------QLQHNSVSVVHFDTAKDQ 584
+ + GL +++ V +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252
Query: 585 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANENRIKILET 643
A G +V++ +D+ K + + + + +G+ + + + +
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRVPLPHS----YYSVNVSTDGSTVWLGGALGDLAAYDA 308
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.8 bits (91), Expect = 0.001
Identities = 15/160 (9%), Positives = 28/160 (17%), Gaps = 9/160 (5%)
Query: 331 IEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD-PGV 389
S P + F K D + L D
Sbjct: 170 KPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS------DARQQLEIDAHVGNVNDLAFSA 443
+ + ++ + + S
Sbjct: 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVST 289
Query: 444 PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 483
+ G + +DA T + + G SL
Sbjct: 290 DGSTV--WLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.4 bits (90), Expect = 0.002
Identities = 13/165 (7%), Positives = 40/165 (24%), Gaps = 12/165 (7%)
Query: 450 VITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 507
++ + V D + + + G +++ +
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR-IAYATVNKSESLVKID 62
Query: 508 YDSLGARVDYDAP-----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 562
+ D A S +G+ L + E E + A+
Sbjct: 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122
Query: 563 YQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 603
+ ++++ + ++ G D + + +
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLV 167
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.0 bits (125), Expect = 8e-08
Identities = 43/335 (12%), Positives = 83/335 (24%), Gaps = 36/335 (10%)
Query: 313 SFGETS-FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLG------LWDVNSGQKLFIR 365
F +T+ F P+T + + + P + V S I
Sbjct: 2 EFSQTALFPSLPRTA-------RGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEI- 53
Query: 366 NFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 425
+ SP G V+++ + +
Sbjct: 54 ------------------YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 95
Query: 426 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 485
I G V D + + + A +
Sbjct: 96 T-TIPVFSGPVKD-ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVD 153
Query: 486 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 545
I S S D + + + + + Y+ +G S G
Sbjct: 154 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI 213
Query: 546 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 605
+ G + SV + + +I +A D IKIW++ +++
Sbjct: 214 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 273
Query: 606 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 640
TI G + E+ ++ L I+ I
Sbjct: 274 KTIPVGTRI-EDQQLGIIWTKQALVSISANGFINF 307
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.9 bits (117), Expect = 9e-07
Identities = 17/119 (14%), Positives = 30/119 (25%), Gaps = 7/119 (5%)
Query: 830 TIMPPSP-----TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 884
+ P P TA L P + I S + S HS + T
Sbjct: 7 ALFPSLPRTARGTAVVLGNTP-AGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVA 64
Query: 885 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 943
S + S + +WD ++ G + ++ +
Sbjct: 65 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG 123
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 844 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSGGDA 900
D IA D TI I+N + +V + ++ + G++++ LVS +
Sbjct: 246 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK--QALVSISANG 303
Query: 901 QIFVWDVD 908
I + +
Sbjct: 304 FINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.6 bits (111), Expect = 4e-06
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAW 506
+ + DKTIK+W+ T + + + SIS +G I
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINFV 308
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 53.3 bits (126), Expect = 9e-08
Identities = 34/315 (10%), Positives = 73/315 (23%), Gaps = 56/315 (17%)
Query: 369 VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH----------IVQLYAYH 418
V D A ++ G + V + DGS + A + V+++
Sbjct: 32 VIDGEAGRVIGMI-----DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 86
Query: 419 GGSDARQQLEIDAHVGNV----NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 474
DA V + + K + + V D + +
Sbjct: 87 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD 146
Query: 475 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM------A 528
F DG + + + G A
Sbjct: 147 VPDCYHIFPTA----PDTFF-MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPA 201
Query: 529 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH----------- 577
YS RL + G+ ++ + + + L +
Sbjct: 202 YSQKAGRLVWP--TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA 259
Query: 578 ------FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLA 630
+D+ + + D + L + G I +++ L
Sbjct: 260 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE----IDSINVSQDEKPLL 315
Query: 631 VIAN--ENRIKILET 643
+ + + I +
Sbjct: 316 YALSTGDKTLYIHDA 330
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.5 bits (124), Expect = 1e-07
Identities = 33/340 (9%), Positives = 85/340 (25%), Gaps = 22/340 (6%)
Query: 587 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 646
+ D +++ ID G P +G+ +A A+ +I +
Sbjct: 23 HFAAVTQQFVIDGEAGRVIGMIDGGFL----PNPVVADDGSFIAH-ASTVFSRIARGERT 77
Query: 647 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 706
+ V+ ++ P + G S+ D K + + S A V+
Sbjct: 78 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-PAPAVGVVDL 136
Query: 707 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 766
A + + G
Sbjct: 137 EGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL 196
Query: 767 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK 826
+ T + + S + +L + +
Sbjct: 197 INHP------AYSQKAGRLVWPTYTGKIHQIDLS--SGDAKFLPAVEALTEAERADGWRP 248
Query: 827 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 886
+ + + +++ +A++ E ++K E + +
Sbjct: 249 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINV 307
Query: 887 S--DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV 924
S + + S GD +++ D ++ L++ + +
Sbjct: 308 SQDEKPLLYALSTGDKTLYIHDA-----ESGEELRSVNQL 342
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.0 bits (115), Expect = 2e-06
Identities = 18/151 (11%), Positives = 42/151 (27%), Gaps = 13/151 (8%)
Query: 333 GSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 392
+ S + +T + D++SG F+ + +
Sbjct: 200 PAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA-------DGWRPGGWQ 252
Query: 393 RVVWSPDGSLLGVAYSKHIVQLYAYHGGS------DARQQLEIDAHVGNVNDLAFSAPCK 446
+V + + + + + ++L ++ + S K
Sbjct: 253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEK 312
Query: 447 QISVITCGDDKTIKVWDAVTGSRTYSFEGHG 477
+ DKT+ + DA +G S G
Sbjct: 313 PLLYALSTGDKTLYIHDAESGEELRSVNQLG 343
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.9 bits (94), Expect = 6e-04
Identities = 21/229 (9%), Positives = 48/229 (20%), Gaps = 38/229 (16%)
Query: 394 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI----DAHVGNVNDLAFSAPCKQIS 449
P + + G + +N A+S ++
Sbjct: 151 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL- 209
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
+ I D +G + + + L D
Sbjct: 210 -VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD 268
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
K F+V + G ++
Sbjct: 269 Q--------------------------RDEWRHKTASRFVVVLDAKTGERLAKFEM---- 298
Query: 570 HNSVSVVHF--DTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 616
+ + ++ D + D + I D + L +++ G P+
Sbjct: 299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQ 347
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.7 bits (124), Expect = 9e-08
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 432 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKEN 490
H + L+ SA K + + + I WD TG F + H + + +K +
Sbjct: 11 HNKAITALSSSADGKTL--FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68
Query: 491 IHFIFS 496
+ +
Sbjct: 69 LFTVSW 74
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.6 bits (103), Expect = 4e-05
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 839 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDALNILVSSG 897
T+L+ + D + + I ++ + + H+ +TG+ + L +
Sbjct: 16 TALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLFTVS 73
Query: 898 GDAQIFVWDVDGWGIQTC 915
D + V G G+ +
Sbjct: 74 WDDHLKVVPAGGSGVDSS 91
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.1 bits (99), Expect = 1e-04
Identities = 12/69 (17%), Positives = 21/69 (30%)
Query: 869 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 928
+ GH+K +T L S L S+ + I WD+ + +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 929 PSETHIQFH 937
+ F
Sbjct: 63 TTSKGDLFT 71
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.9 bits (96), Expect = 3e-04
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 843 FNPHDNNVIAIGMDDSTILIYNAR--SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA 900
DN +A G D++++++N S I H+ V +VS+G D+
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS 290
Query: 901 QIFVWDV 907
I W+V
Sbjct: 291 NIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.1 bits (94), Expect = 5e-04
Identities = 13/58 (22%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 451 ITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506
T D ++ VW+ S H + E I S D IK W
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--TIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.4 bits (92), Expect = 7e-04
Identities = 40/297 (13%), Positives = 80/297 (26%), Gaps = 26/297 (8%)
Query: 325 TVAQTLIEGSSSP-MSMDFHPVQHTLLLG-------LWDVNSGQKL-------------- 362
++ Q G + ++ TL WD+++G
Sbjct: 3 SIDQVR-YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61
Query: 363 -FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS 421
++ + L S V LG+A S A
Sbjct: 62 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 121
Query: 422 DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 481
A V + + A + G + ++G+ + P
Sbjct: 122 IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE 181
Query: 482 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 541
N F+ + K+ + + ++ ++A + T
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 241
Query: 542 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 598
S +V WN ++ + +SV+ V + I++AG D IK W+
Sbjct: 242 GSLDNSVIV-WNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQDSNIKFWN 296
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.5 bits (124), Expect = 2e-07
Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 15/92 (16%)
Query: 430 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----------GHGA 478
AH ++ ++ ++C D +KVWD + H
Sbjct: 11 KAHDADIFSVSACNS----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 479 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 510
V + + + S G + +
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITR 98
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.4 bits (121), Expect = 3e-07
Identities = 43/394 (10%), Positives = 106/394 (26%), Gaps = 39/394 (9%)
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-------- 621
H++ + ++ D +K+WD + D +
Sbjct: 13 HDA-DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71
Query: 622 ---FNKNGTLLAVIANENRIKILETPESNSVD-----AAGVLSDNLRKLSVNPISTVTGA 673
L+A + + + +L +++K S +
Sbjct: 72 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131
Query: 674 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 733
V D K ++S ++ E Q + + + +
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191
Query: 734 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP--RLYQPRHGPQFMVNDTTDS 791
+ G + V + L + + + + PQ +
Sbjct: 192 ISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD 251
Query: 792 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI 851
++ ++ + S S + + L S SL+FN +
Sbjct: 252 SNSFGCITLYETEFGERIGSLSVP------THSSQASLGEFAHSSWVMSLSFNDS-GETL 304
Query: 852 AIGMDDSTILIYNARSSEVISKLEGHSKRV----TGLVFSDALNILVSSGGDAQIFVWDV 907
D + ++ ++ E I+ L H + L + + L G V+DV
Sbjct: 305 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFDV 358
Query: 908 DGW--GIQTCRSLQTPDGVMTLAPSETHIQFHKD 939
G ++ + + + + I++ ++
Sbjct: 359 KFLKKGWRSGMGADLNESLCCVCLDRS-IRWFRE 391
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 33/320 (10%), Positives = 88/320 (27%), Gaps = 48/320 (15%)
Query: 353 LWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 412
+WD ++ + + V + + L+ +
Sbjct: 38 VWDNKLLDNENPKDKSYSHFV------HKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 91
Query: 413 QLYAYHGGSDAR-------QQLEIDAHVGNVNDLAFSAPCKQIS---VITCGDDKTIKVW 462
Y + + L+ D + L + A ++ ++ T +W
Sbjct: 92 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW 151
Query: 463 DA-VTGSRTYSFEGHGAPVYSLCPHAKENIH--------------FIFSISVDGKIKAWL 507
+ S + +P L + + I + +G ++
Sbjct: 152 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISE 211
Query: 508 YDSLGARVDYD-----APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 562
+L +++ R + L + + + G +
Sbjct: 212 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 271
Query: 563 YQG----------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-- 610
+ V + F+ + + + +AG D ++ WD+ + +TT++
Sbjct: 272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 331
Query: 611 GGGLPENPRICFNKNGTLLA 630
E + +++G LA
Sbjct: 332 DDIEIEEDILAVDEHGDSLA 351
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (103), Expect = 6e-05
Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 22/193 (11%)
Query: 305 SLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFI 364
E S + + ++ + S S+D + + G + +
Sbjct: 155 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RGLIATGFNNG------TV 207
Query: 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH------ 418
+ ++ + + + S+ V +SP GSLL +A+ + +
Sbjct: 208 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 267
Query: 419 -------GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 471
++ L AH V L+F+ + + + G D ++ WD T R
Sbjct: 268 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL--CSAGWDGKLRFWDVKTKERIT 325
Query: 472 SFEGHGAPVYSLC 484
+ H +
Sbjct: 326 TLNMHCDDIEIEE 338
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.004
Identities = 48/456 (10%), Positives = 109/456 (23%), Gaps = 89/456 (19%)
Query: 472 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA 531
+ + H A ++S+ F S S DG +K W
Sbjct: 9 AGKAHDADIFSVSACNS----FTVSCSGDGYLKVW------------------------- 39
Query: 532 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGD 590
+ + E + + ++ + + + D + ++A
Sbjct: 40 ------------DNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 87
Query: 591 DHVIKIWDMNKVQLLTTIDAGGGLPENPRI-------------CFNKNGTLLAVIANENR 637
+ + + + + + + L +
Sbjct: 88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT 147
Query: 638 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 697
I + + L+ + + + SV ++E I+
Sbjct: 148 TYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL------IATG 201
Query: 698 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 757
N + L S + + R + ++ A+A +
Sbjct: 202 FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY 261
Query: 758 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVI 817
+ VP Q G + + ++ + D G +
Sbjct: 262 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD--------GKL 313
Query: 818 SLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 873
+ V T + I T+ LA + H +++ G+ D L
Sbjct: 314 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL------------ 361
Query: 874 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 909
K + +D L D I + G
Sbjct: 362 ----KKGWRSGMGADLNESLCCVCLDRSIRWFREAG 393
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 23/153 (15%), Positives = 41/153 (26%), Gaps = 14/153 (9%)
Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 387
+ SP P T G +D+N K + +
Sbjct: 221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE-----SS 275
Query: 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ 447
+ + V + A K ++ Y ++ N+ DL SA K
Sbjct: 276 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNLTDLRLSADRKT 328
Query: 448 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 480
+ + DD I + + E P+
Sbjct: 329 V--MVRKDDGKIYTFPLEKPEDERTVETDKRPL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 18/204 (8%), Positives = 52/204 (25%), Gaps = 8/204 (3%)
Query: 396 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 454
+SP DG L+ Q + ++ + + K +
Sbjct: 10 FSPLDGDLIAFVSRG---QAFIQDVSGTYVLKV---PEPLRIRYVRRGGDTKVAFIHGTR 63
Query: 455 DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR 514
+ + ++D TG FE + V+++ + + +
Sbjct: 64 EGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 122
Query: 515 VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVS 574
+ ++ ++ E + ++++ R +++
Sbjct: 123 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDY 182
Query: 575 VVHFDTAKDQILAAGDDHVIKIWD 598
FD + + D
Sbjct: 183 APAFDADSKNLYYLSYRSLDPSPD 206
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 44.1 bits (102), Expect = 7e-05
Identities = 10/168 (5%), Positives = 40/168 (23%), Gaps = 15/168 (8%)
Query: 450 VITCGDDKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 502
+ D V + + + + ++
Sbjct: 193 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 252
Query: 503 -IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 561
++ + P + + + L++++ +
Sbjct: 253 YKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE 312
Query: 562 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 609
N+++ + + ++ DD I + + K + T++
Sbjct: 313 V-------KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 42.2 bits (97), Expect = 2e-04
Identities = 29/334 (8%), Positives = 73/334 (21%), Gaps = 75/334 (22%)
Query: 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS----- 442
+ + V D + + ++ L Y + + + + ++GNV +
Sbjct: 42 PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT--GKAEKFEENLGNVFAMGVDRNGKF 99
Query: 443 ---------------------------------------------APCKQISVITCGDDK 457
+ +
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159
Query: 458 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 517
I V+D + + + P + ++ +S + L +
Sbjct: 160 AIHVYDMEGRKIFAATTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEV 216
Query: 518 DAPGLGCT-------RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 570
+ + + R L+
Sbjct: 217 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI 276
Query: 571 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 630
SV A + V+ +D+ ++ + L + + +
Sbjct: 277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL------RLSADRKTVM 330
Query: 631 VIANENRIKI--LETPESNSVDAAGVLSDNLRKL 662
V ++ +I LE PE + + R L
Sbjct: 331 VRKDDGKIYTFPLEKPEDER-----TVETDKRPL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 41.4 bits (95), Expect = 4e-04
Identities = 8/67 (11%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 843 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 902
+ + +L Y+ ++ K+ +T L S ++ D +I
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTVMVRKDDGKI 338
Query: 903 FVWDVDG 909
+ + ++
Sbjct: 339 YTFPLEK 345
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 47.5 bits (112), Expect = 7e-06
Identities = 28/231 (12%), Positives = 51/231 (22%), Gaps = 16/231 (6%)
Query: 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAP 444
G +V+ S G L V V + + EI
Sbjct: 61 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK-EPTTVAEIKIGSEARSIETSKMEGWE 119
Query: 445 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH----------FI 494
K + + D T G H + + FI
Sbjct: 120 DKYA-IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 178
Query: 495 FSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 553
++ GKI Y L + + + R + ++ +
Sbjct: 179 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 238
Query: 554 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 604
AI+ T + VH + D + + +
Sbjct: 239 GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH 289
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 39.0 bits (90), Expect = 0.002
Identities = 20/148 (13%), Positives = 42/148 (28%), Gaps = 7/148 (4%)
Query: 833 PPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 891
P T + N+ ++ D I + + + E+ + L+ V S +
Sbjct: 16 APEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGR 74
Query: 892 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--T 949
L G D ++ + D+ T ++ ++ S + +
Sbjct: 75 YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS---KMEGWEDKYAIAGAYWPP 131
Query: 950 HLAIYEAEELTCLKQWFPISSVPISQAT 977
I + E L K Q
Sbjct: 132 QYVIMDGETLEPKKIQSTRGMTYDEQEY 159
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.0 bits (105), Expect = 3e-05
Identities = 30/301 (9%), Positives = 60/301 (19%), Gaps = 51/301 (16%)
Query: 381 TALVRDPGVSVNRVVWSPDGSLLGVA----------YSKHIVQLYAYHGGSDARQQLEID 430
L G ++ V GS +A V+++ +I+
Sbjct: 57 VTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF---LPIADIE 113
Query: 431 AH-------VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 483
V+ + A + + S +
Sbjct: 114 LPDAPRFSVGPRVHIIGNCASSACL-LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH- 171
Query: 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------APGLGCTRMAYS 530
P A + S + A + A A M
Sbjct: 172 -PGAA---ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW 227
Query: 531 ANGRRLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQ--HNSVSVVHFDTAKDQI 585
A + G + + +E G Q+ + + T +
Sbjct: 228 AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR 287
Query: 586 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE--NRIKILE 642
+ Q I G I ++G + + I +
Sbjct: 288 SCLAAAENTSSVTASVGQTSGPISNGHD----SDAIIAAQDGASDNYANSAGTEVLDIYD 343
Query: 643 T 643
Sbjct: 344 A 344
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.9 bits (97), Expect = 3e-04
Identities = 8/93 (8%), Positives = 24/93 (25%), Gaps = 9/93 (9%)
Query: 394 VVWSPDGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCK 446
V + + + +H Q ++ + + + +
Sbjct: 269 VAKLKNTDGIMILTVEHS--RSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGA 326
Query: 447 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 479
+ + + ++DA + S E P
Sbjct: 327 SDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.7 bits (94), Expect = 7e-04
Identities = 25/292 (8%), Positives = 53/292 (18%), Gaps = 66/292 (22%)
Query: 333 GSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 392
+ LL L+ ++ + S T +
Sbjct: 122 VGPRVHIIGNCASSACLLFFLFGSSAA--------AGLSVPGASDDQLTKSASCFHIHPG 173
Query: 393 R----VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQI 448
+ S SL + Q A N + A I
Sbjct: 174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSI 233
Query: 449 SVITCGDDKTIKVWD---AVTGSRTYSFEGHGAPVYSLCPHAKE---NIHFIFSISVDGK 502
+G + +F G + + + +
Sbjct: 234 LQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAA 293
Query: 503 IKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 561
S+G + G + + +G
Sbjct: 294 ENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN------------------------ 329
Query: 562 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 613
+ V+ I+D Q ++++ G
Sbjct: 330 -----------------------YANSAGTEVLDIYDAASDQDQSSVELDKG 358
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 43.8 bits (102), Expect = 9e-05
Identities = 40/381 (10%), Positives = 93/381 (24%), Gaps = 47/381 (12%)
Query: 587 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETPE 645
D I + D + +++ ID G + +G L VI + RI I +
Sbjct: 37 TLRDAGQIALVDGDSKKIVKVIDTGYA-VHI--SRMSASGRYLLVIGRDARIDMIDLWAK 93
Query: 646 SNSVDAAGVLSDNLRKLSVNPISTVTG-----AGIANGSVSVNEDPKEDVKPEISVEAEN 700
+ A + R + + ++ + + K +S
Sbjct: 94 EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153
Query: 701 KSEVEKPLFARP-----SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 755
R S + + + K+ + Y + L
Sbjct: 154 VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGG 213
Query: 756 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV----------PCFALSKN 805
+ A + P ++ S
Sbjct: 214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL 273
Query: 806 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI------GMDDST 859
S G + +K + + + + +P +++ +
Sbjct: 274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 333
Query: 860 ILIYNARSSEVISK---------LEGHSKRVTGLVFS-DALNILVSSGGDA----QIFVW 905
+ +++ ++ + + L +KRV ++ + S + V
Sbjct: 334 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV 393
Query: 906 DVDG---WGIQTCRSLQTPDG 923
D + L TP G
Sbjct: 394 DDKTLKLKAVVKDPRLITPTG 414
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 42.2 bits (98), Expect = 3e-04
Identities = 21/212 (9%), Positives = 54/212 (25%), Gaps = 9/212 (4%)
Query: 833 PPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 891
P + N+ ++ D I + + S +++ ++ V S +
Sbjct: 16 KPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGR 74
Query: 892 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET-- 949
L+ G DA+I + D+ ++ ++ + + +
Sbjct: 75 YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE---SSKFKGYEDRYTIAGAYWPP 131
Query: 950 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH--EASNLEVQCR 1007
AI + E L + +Q + + I + + +
Sbjct: 132 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 191
Query: 1008 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1039
L T+ +
Sbjct: 192 YKDIDNLTVTSIGAAPFLADGGWDSSHRYFMT 223
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 40.2 bits (92), Expect = 0.001
Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
Query: 407 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466
+ + I + +A + K++ + T+ V D T
Sbjct: 218 NVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKV-YVALSFCNTVSVIDTAT 275
Query: 467 GSRTYSFEGHGAP 479
+ T + P
Sbjct: 276 NTITATMAVGKNP 288
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 39.9 bits (91), Expect = 0.001
Identities = 38/291 (13%), Positives = 77/291 (26%), Gaps = 16/291 (5%)
Query: 587 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE-NRIKILETP 644
A + I + D+ ++ TI G NP + +GT + V N + I++T
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGS----NPMGAVISPDGTKVYVANAHSNDVSIIDT- 61
Query: 645 ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 704
A + + S V+ G ++ + + A
Sbjct: 62 ------ATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG 115
Query: 705 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 764
+ PL S L + +S + + D T
Sbjct: 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVT--PDGTKVY 173
Query: 765 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT 824
A + ++ +K +S+ T
Sbjct: 174 VANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233
Query: 825 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 875
K I P P +A P V +T+ + + ++ + + +
Sbjct: 234 NKITARI-PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 38.7 bits (88), Expect = 0.003
Identities = 21/179 (11%), Positives = 46/179 (25%), Gaps = 6/179 (3%)
Query: 446 KQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 503
KQ I + + I VW+ V + + + + + ++
Sbjct: 3 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRV 61
Query: 504 KAWLYDS---LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560
A+ A T ++ G+ +F + S + +
Sbjct: 62 LAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV 121
Query: 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 619
+GL H++ T L + + D + + PR
Sbjct: 122 DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR 180
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1084 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.89 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.88 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.88 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.88 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.88 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.87 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.84 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.81 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.77 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.77 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.59 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.58 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.58 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.56 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.52 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.43 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.26 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.23 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.23 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.09 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.06 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.03 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.98 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.97 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.89 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.87 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.86 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.86 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.85 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.79 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.76 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.67 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.35 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.3 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.29 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.25 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.08 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.92 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.89 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.86 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.84 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.82 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.79 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.75 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.69 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.68 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.65 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.63 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.57 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.54 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.52 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.52 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.51 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.49 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.33 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.24 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.05 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.81 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 96.08 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.39 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.68 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 93.68 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 93.58 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.0 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 92.96 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 92.3 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 92.04 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 91.36 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 89.41 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 87.41 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 81.18 | |
| d2nxpa1 | 149 | TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId | 80.87 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.3e-36 Score=330.87 Aligned_cols=291 Identities=14% Similarity=0.175 Sum_probs=250.7
Q ss_pred ceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccc--ceeeeecCCCCCeEEEEEcCCCCE
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSML--FKTALVRDPGVSVNRVVWSPDGSL 402 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~--~~~~~~~~h~~~V~~v~fspdg~~ 402 (1084)
+.+++| +|.+.|.+++|||||++||+|+ | +.|+|||+.+.... .......+|...|.+++|+|||++
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-d---------g~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~ 111 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-K---------GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT 111 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSSEEEEEC-B---------SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSE
T ss_pred eEEEEC-CCCCcEEEEEECCCCCEEEEEE-C---------CEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCE
Confidence 334455 8999999999999999999985 6 89999999765432 233335679999999999999999
Q ss_pred EEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEE
Q 001403 403 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~ 482 (1084)
|++|+.|++|++||+..... .....+..|...|.+++|+|++. ++++++.|+.|++||+.+++......+|...|.+
T Consensus 112 l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~ 188 (337)
T d1gxra_ 112 LIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 188 (337)
T ss_dssp EEEEESSSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEeeccccccccccccccc-ccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccc
Confidence 99999999999999886543 22336778999999999999999 8999999999999999999999999999999999
Q ss_pred EeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee
Q 001403 483 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 483 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 562 (1084)
++|++ ++..+++++.||.+++||+++.+....+. +...|.+++|+|+++++++++. ++.+++||+.+++...
T Consensus 189 l~~s~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~- 260 (337)
T d1gxra_ 189 IDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNKPDKYQ- 260 (337)
T ss_dssp EEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET----TSCEEEEETTSSCEEE-
T ss_pred ccccc--cccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecc----cccccccccccccccc-
Confidence 99954 66899999999999999999877665554 5668999999999999999876 6669999999887754
Q ss_pred eeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEE
Q 001403 563 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 563 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
...|. ..|.+++|+|++++|++++.||.|++||..+++.+..+... ..|.+++|+|++++|++++.||.|+|||
T Consensus 261 ~~~~~---~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~t~s~D~~I~vWd 334 (337)
T d1gxra_ 261 LHLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp ECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ccccc---cccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC---CCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 34455 78999999999999999999999999999999999887643 3589999999999999999999999998
Q ss_pred c
Q 001403 643 T 643 (1084)
Q Consensus 643 ~ 643 (1084)
+
T Consensus 335 l 335 (337)
T d1gxra_ 335 V 335 (337)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.5e-35 Score=319.62 Aligned_cols=289 Identities=22% Similarity=0.352 Sum_probs=263.3
Q ss_pred eeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 405 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 405 (1084)
..++|.||++.|++++|||+|++||+++.| ++|+|||+.++..... +.+|...|.+++|+|++.++++
T Consensus 9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~D---------g~i~iWd~~~~~~~~~---~~~h~~~V~~~~~~~~~~~~~~ 76 (317)
T d1vyhc1 9 EKYALSGHRSPVTRVIFHPVFSVMVSASED---------ATIKVWDYETGDFERT---LKGHTDSVQDISFDHSGKLLAS 76 (317)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESS---------SCEEEEETTTCCCCEE---ECCCSSCEEEEEECTTSSEEEE
T ss_pred ccEEEcCCCCCeEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCCEEEE---EeCCCCcEEEEeeecccccccc
Confidence 346799999999999999999999999988 9999999998766543 6789999999999999999999
Q ss_pred EeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEee
Q 001403 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 485 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~ 485 (1084)
+..++.+.+|+....+... .+.+|...+.++.|++++. .+++++.|+.+++||+++++.+..+.+|...+.++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (317)
T d1vyhc1 77 CSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 151 (317)
T ss_dssp EETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred ccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCCcceeeec
Confidence 9999999999998876444 5678999999999999999 8999999999999999999999999999999999999
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCC--------------------CEEEEEeeCCCC
Q 001403 486 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--------------------RRLFSCGTSKEG 545 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~--------------------~~l~~~~~~~~~ 545 (1084)
++ ++.+|++++.||.|++|++........+..+...+.+++++|++ ..+++++.
T Consensus 152 ~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 225 (317)
T d1vyhc1 152 NQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR---- 225 (317)
T ss_dssp CT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET----
T ss_pred cc--CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC----
Confidence 54 67899999999999999999999999999999999999998764 35666664
Q ss_pred CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecC
Q 001403 546 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 625 (1084)
Q Consensus 546 ~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 625 (1084)
++.|++||..+++.+..+.+|. ..|.+++|+|++++|++++.||.|++||+.+++++..+..|.. .|.+++|+|+
T Consensus 226 d~~i~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~--~V~~~~~s~~ 300 (317)
T d1vyhc1 226 DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKT 300 (317)
T ss_dssp TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSS
T ss_pred CCEEEEEECCCCcEEEEEeCCC---CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEcCC
Confidence 6779999999999999999988 8999999999999999999999999999999999999987654 6999999999
Q ss_pred CCEEEEEECCCeEEEEE
Q 001403 626 GTLLAVIANENRIKILE 642 (1084)
Q Consensus 626 ~~~l~~~~~dg~i~iwd 642 (1084)
+++|++++.||.|++||
T Consensus 301 ~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 301 APYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSCEEEEETTSEEEEEC
T ss_pred CCEEEEEeCCCeEEEeC
Confidence 99999999999999996
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.4e-34 Score=316.32 Aligned_cols=283 Identities=13% Similarity=0.181 Sum_probs=242.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCcccccee--eeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 386 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 386 ~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~--~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
+|...|.+++|||+|++||+|+ ||.|+|||+.++....... ...+|.+.|.+++|+||++ +|++|+.|++|++||
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~--~l~s~~~dg~i~iwd 125 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWD 125 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC--EEEEeeccccccccc
Confidence 6999999999999999999987 7899999998765443322 3457999999999999999 899999999999999
Q ss_pred CCC--CceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEee
Q 001403 464 AVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 464 ~~~--g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 541 (1084)
+.. ++....+..|...+..++|++ ++.++++++.|+.|++|++.+.+.......+...+.+++|++++..+++++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~ 203 (337)
T d1gxra_ 126 LAAPTPRIKAELTSSAPACYALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred cccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 874 456678889999999999954 6789999999999999999998888888888999999999999999999876
Q ss_pred CCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEE
Q 001403 542 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 621 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 621 (1084)
++.+++||+++++.+..+. +. ..|.+++|+|+++.+++++.|+.+++||+.+++...... +...|.+++
T Consensus 204 ----d~~v~i~d~~~~~~~~~~~-~~---~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~i~~v~ 272 (337)
T d1gxra_ 204 ----DNTVRSWDLREGRQLQQHD-FT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL---HESCVLSLK 272 (337)
T ss_dssp ----TSEEEEEETTTTEEEEEEE-CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC---CSSCEEEEE
T ss_pred ----cccccccccccceeecccc-cc---cceEEEEEcccccccceeccccccccccccccccccccc---cccccceEE
Confidence 6779999999999887765 33 689999999999999999999999999999988765432 334699999
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCc
Q 001403 622 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 701 (1084)
Q Consensus 622 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~ 701 (1084)
|+|++++|++++.||.|++||..+++.+....
T Consensus 273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~------------------------------------------------ 304 (337)
T d1gxra_ 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK------------------------------------------------ 304 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEE------------------------------------------------
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc------------------------------------------------
Confidence 99999999999999999999998876554321
Q ss_pred cccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeec
Q 001403 702 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 755 (1084)
Q Consensus 702 i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~ 755 (1084)
|...|.+++|+|++++|++++.||.|++|++
T Consensus 305 -----------------------~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 305 -----------------------ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -----------------------CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred -----------------------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 4456778888888888888888888888875
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=8.1e-35 Score=316.13 Aligned_cols=291 Identities=15% Similarity=0.211 Sum_probs=246.5
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCE
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 411 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~ 411 (1084)
.+.+.+..++++|+|+.||++. + +.+.+||+.+..... .+.+|...|++++|+|||++||+|+.||+
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~---------~~v~i~~~~~~~~~~---~~~~H~~~v~~~~~sp~g~~latg~~dg~ 81 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-G---------TSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGYYCASGDVHGN 81 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-T---------TEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CCCCCeEEEEEcCCCCEEEEEe-C---------CEEEEEECCCCceeE---EEcCCCCCEEEEEEeCCCCeEeccccCce
Confidence 3444677899999999999962 2 679999998765443 36789999999999999999999999999
Q ss_pred EEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC--CCcEEEEECCCCceeeEeccCCCcEEEEeecccC
Q 001403 412 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 489 (1084)
Q Consensus 412 v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~--d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~ 489 (1084)
|+|||+.+++.... ..+.+|.++|.+++|+|+++ ++++++. +..++||++++++...++.+|...|.+++|+|+.
T Consensus 82 i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~ 158 (311)
T d1nr0a1 82 VRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSR 158 (311)
T ss_dssp EEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSS
T ss_pred Eeeeeeeccccccc-cccccccCcccccccccccc--ccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999998865432 25778999999999999999 6777764 5679999999999999999999999999997643
Q ss_pred CCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccc--
Q 001403 490 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-- 567 (1084)
Q Consensus 490 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-- 567 (1084)
+ ..+++|+.||.|++||+++.+.......+...|.+++++|+++++++++. ++.|++||..++.....+....
T Consensus 159 ~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~~~~~~~~~ 233 (311)
T d1nr0a1 159 P-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTGVFEDDSLK 233 (311)
T ss_dssp S-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEEECBCTTSS
T ss_pred e-eeecccccccccccccccccccccccccccccccccccCccccccccccc----cccccccccccccccccccccccc
Confidence 2 35889999999999999998888889999999999999999999999875 6679999999998877765322
Q ss_pred --cccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 568 --LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 568 --~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
.|...|.+++|+|++++|++|+.||.|+|||++++++++.+..+... ....+.+.+++..+++++.||.|++||.+
T Consensus 234 ~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 234 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp SCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred cccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 13378999999999999999999999999999999999998766432 23345566667789999999999999964
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.2e-34 Score=316.21 Aligned_cols=315 Identities=20% Similarity=0.302 Sum_probs=265.6
Q ss_pred EEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEe
Q 001403 461 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 540 (1084)
Q Consensus 461 vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 540 (1084)
.|.. .....++++||.++|++++|+| ++++|+||+.||+|++||+.+++....+..|...|.+++++|++.+++++.
T Consensus 2 ~w~p-~~~~~~~L~GH~~~I~~l~~sp--~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~ 78 (317)
T d1vyhc1 2 EWIP-RPPEKYALSGHRSPVTRVIFHP--VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 78 (317)
T ss_dssp CCCC-CSSCSCEEECCSSCEEEEEECS--SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ccCC-CCCccEEEcCCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccc
Confidence 3543 3445678999999999999965 668999999999999999999999999999999999999999999999987
Q ss_pred eCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceE
Q 001403 541 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 620 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 620 (1084)
. +..+..|+....+....+.++. ..+.++.|+|+++.+++++.|+.+++||+.+++.+..+..+.. .+.++
T Consensus 79 ~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 149 (317)
T d1vyhc1 79 A----DMTIKLWDFQGFECIRTMHGHD---HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--WVRMV 149 (317)
T ss_dssp T----TSCCCEEETTSSCEEECCCCCS---SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEE
T ss_pred c----cccccccccccccccccccccc---ccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCC--cceee
Confidence 5 5558889998888888888877 8899999999999999999999999999999999999886644 58899
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccC
Q 001403 621 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 700 (1084)
Q Consensus 621 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 700 (1084)
+|+|++.++++++.|+.+++|+..++.....+..+...+.++.++
T Consensus 150 ~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~----------------------------------- 194 (317)
T d1vyhc1 150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA----------------------------------- 194 (317)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-----------------------------------
T ss_pred ecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEe-----------------------------------
Confidence 999999999999999999999999887777666555555444444
Q ss_pred ccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCC
Q 001403 701 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 780 (1084)
Q Consensus 701 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1084)
|++......
T Consensus 195 -----------------------------------~~~~~~~~~------------------------------------ 203 (317)
T d1vyhc1 195 -----------------------------------PESSYSSIS------------------------------------ 203 (317)
T ss_dssp -----------------------------------CSCGGGGGG------------------------------------
T ss_pred -----------------------------------eccccceee------------------------------------
Confidence 333211000
Q ss_pred CccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCe
Q 001403 781 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDST 859 (1084)
Q Consensus 781 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~ 859 (1084)
............++.++++++ |+.|++||+.+++.+.++.+|...|.+++|+| ++++|++|+.||.
T Consensus 204 ------------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~ 270 (317)
T d1vyhc1 204 ------------EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKT 270 (317)
T ss_dssp ------------GCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTE
T ss_pred ------------ccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECC-CCCEEEEEECCCe
Confidence 011111223344567777777 79999999999999999999999999999999 8999999999999
Q ss_pred EEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001403 860 ILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906 (1084)
Q Consensus 860 i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd 906 (1084)
|++||+.+++++..+.+|.+.|++++|+|++++|++|+.||+|+|||
T Consensus 271 i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 271 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 99999999999999999999999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-33 Score=318.94 Aligned_cols=346 Identities=15% Similarity=0.237 Sum_probs=261.3
Q ss_pred EEeCCCEEEEEEccCCccccc-eeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEE
Q 001403 405 VAYSKHIVQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 483 (1084)
Q Consensus 405 s~~~dg~v~iwd~~~~~~~~~-~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~ 483 (1084)
....++.+.+|+....+.+.. +....+|.+.|++++|+|||+ +|++|+ |++|+|||+.+++.+.++..+.......
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~--~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~ 109 (388)
T d1erja_ 33 KKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE--YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP 109 (388)
T ss_dssp EEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSS--EEEEEC-BSCEEEEETTTCCEEEEECC--------
T ss_pred ccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCC--EEEEEe-CCeEEEEEecccceEeeecccccccccc
Confidence 455667788998776554321 223347999999999999999 889887 8999999999999998887665432221
Q ss_pred eecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeee
Q 001403 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 563 (1084)
Q Consensus 484 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 563 (1084)
.. + .......+...|.+++|+|+|++|++++. ++.|++||..+++.+..+
T Consensus 110 ~~--------~------------------~~~~~~~~~~~V~~l~~s~~~~~l~s~~~----dg~v~i~~~~~~~~~~~~ 159 (388)
T d1erja_ 110 EN--------L------------------NTSSSPSSDLYIRSVCFSPDGKFLATGAE----DRLIRIWDIENRKIVMIL 159 (388)
T ss_dssp -----------------------------------CCCCBEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEEEE
T ss_pred cc--------c------------------ccccccCCCCCEEEEEECCCCCcceeccc----cccccccccccccccccc
Confidence 10 0 01112345668999999999999999986 667999999999999999
Q ss_pred eccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec-CCCEEEEEECCCeEEEEE
Q 001403 564 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILE 642 (1084)
Q Consensus 564 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd 642 (1084)
.+|. ..|.++.+++++..+++++.++.+++||..+.........+.. ...+.+.+ ++++|++++.|+.|++|+
T Consensus 160 ~~h~---~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~~ 233 (388)
T d1erja_ 160 QGHE---QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG---VTTVAVSPGDGKYIAAGSLDRAVRVWD 233 (388)
T ss_dssp CCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC---EEEEEECSTTCCEEEEEETTSCEEEEE
T ss_pred cccc---ccccccccccccccccccccceeeeeeeccccccccccccccc---cccccccCCCCCeEEEEcCCCeEEEee
Confidence 9888 8999999999999999999999999999999988887765543 45555555 889999999999999999
Q ss_pred cCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCC
Q 001403 643 TPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS 722 (1084)
Q Consensus 643 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 722 (1084)
..++.....+..... ..
T Consensus 234 ~~~~~~~~~~~~~~~---------------------------------------------------------------~~ 250 (388)
T d1erja_ 234 SETGFLVERLDSENE---------------------------------------------------------------SG 250 (388)
T ss_dssp TTTCCEEEEEC---------------------------------------------------------------------
T ss_pred cccCccceeeccccc---------------------------------------------------------------cc
Confidence 998765544321100 00
Q ss_pred ccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEe
Q 001403 723 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 802 (1084)
Q Consensus 723 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 802 (1084)
.+|...|.+++|+|+++.|++++.||.+++|++..... ... ..
T Consensus 251 ~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~----------------------~~~--------------~~- 293 (388)
T d1erja_ 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN----------------------KSD--------------SK- 293 (388)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------------------------------------------
T ss_pred cCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcc----------------------ccc--------------cc-
Confidence 12667788888888888888888888888887543211 000 00
Q ss_pred cCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEE
Q 001403 803 SKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 882 (1084)
Q Consensus 803 s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~ 882 (1084)
....+........|...|.+++|+| ++++|++|+.||.|++||+.+++++.++.+|.+.|+
T Consensus 294 ------------------~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~ 354 (388)
T d1erja_ 294 ------------------TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 354 (388)
T ss_dssp -----------------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred ------------------cccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEE
Confidence 0011223344556788999999999 899999999999999999999999999999999999
Q ss_pred EEEE------cCCCCEEEEEeCCCcEEEEeCC
Q 001403 883 GLVF------SDALNILVSSGGDAQIFVWDVD 908 (1084)
Q Consensus 883 ~l~~------spd~~~l~s~s~dg~I~iwd~~ 908 (1084)
++++ +||+.+||||+.||+|+||+++
T Consensus 355 ~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 355 SVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 9975 5789999999999999999985
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-33 Score=318.56 Aligned_cols=288 Identities=15% Similarity=0.267 Sum_probs=238.0
Q ss_pred ccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccccee---------------eeecCCCCCeEEEE
Q 001403 331 IEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKT---------------ALVRDPGVSVNRVV 395 (1084)
Q Consensus 331 ~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~---------------~~~~~h~~~V~~v~ 395 (1084)
.+|++.|+|++|||||++||+|+ | ++|+|||+.++...... ....+|...|.+++
T Consensus 59 ~~H~~~V~~l~fs~dg~~lasg~-d---------~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 128 (388)
T d1erja_ 59 LDHTSVVCCVKFSNDGEYLATGC-N---------KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC 128 (388)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-B---------SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEe-C---------CeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEE
Confidence 37999999999999999999985 6 89999999876543321 12345788899999
Q ss_pred EcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEecc
Q 001403 396 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 475 (1084)
Q Consensus 396 fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~ 475 (1084)
|+|||++|++|+.||.|++||..+++.+. .+.+|...|.+++|++++. .+++++.++.+++||..+.........
T Consensus 129 ~s~~~~~l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~ 203 (388)
T d1erja_ 129 FSPDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSI 203 (388)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCcceeccccccccccccccccccc---ccccccccccccccccccc--cccccccceeeeeeecccccccccccc
Confidence 99999999999999999999999986555 6778999999999999998 799999999999999999988877776
Q ss_pred CCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee-------cCCCCeEEEEEEcCCCCEEEEEeeCCCCCee
Q 001403 476 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESF 548 (1084)
Q Consensus 476 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 548 (1084)
+...+ ++.+. ..++.+|++++.||.|++|+..+......+ ..+...|.+++|+|++++|++++. ++.
T Consensus 204 ~~~~~-~~~~~-~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~~ 277 (388)
T d1erja_ 204 EDGVT-TVAVS-PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRS 277 (388)
T ss_dssp SSCEE-EEEEC-STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSE
T ss_pred ccccc-ccccc-CCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC----CCc
Confidence 55544 44444 346789999999999999999987765544 345678999999999999999886 677
Q ss_pred EEEecCCCceEe------------eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCC
Q 001403 549 LVEWNESEGAIK------------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 616 (1084)
Q Consensus 549 i~~wd~~~~~~~------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 616 (1084)
|++||+.++... .....|. ..|.+++|+|++++|++|+.||.|++||+.+++++..+..|.. .
T Consensus 278 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~--~ 352 (388)
T d1erja_ 278 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--S 352 (388)
T ss_dssp EEEEEC---------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--C
T ss_pred EEEEeccCCccccccccccccceeeeccccc---ceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC--C
Confidence 999999865443 2333344 7899999999999999999999999999999999999987754 5
Q ss_pred cceEE------EecCCCEEEEEECCCeEEEEEcC
Q 001403 617 NPRIC------FNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 617 v~~v~------~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
|.+++ |+|++.+|++|+.||+|+||+++
T Consensus 353 V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 353 VISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 77776 46789999999999999999975
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.5e-33 Score=306.11 Aligned_cols=282 Identities=13% Similarity=0.105 Sum_probs=231.4
Q ss_pred ccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC
Q 001403 725 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 804 (1084)
Q Consensus 725 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 804 (1084)
+.+....++++|+|+.++.+. ++.+.+|++..... ...+ . +|...|++++|+|
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~----------------------~~~~--~--~H~~~v~~~~~sp 68 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD----------------------TEIY--T--EHSHQTTVAKTSP 68 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC----------------------CEEE--C--CCSSCEEEEEECT
T ss_pred CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCce----------------------eEEE--c--CCCCCEEEEEEeC
Confidence 444566789999999888774 55688887654321 1111 1 4899999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeE--EEEcCCCCCeEEEEEcCCCCcEEEEEeCC--CeEEEEEcCCceeeeeeccccc
Q 001403 805 NDAYLFSAS-GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDD--STILIYNARSSEVISKLEGHSK 879 (1084)
Q Consensus 805 dg~~l~~~s-dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~la~g~~d--g~i~iwd~~~~~~~~~l~~h~~ 879 (1084)
+|++|++++ ||+|++||+.+++.. ..+..|...|.+++|+| ++++|++++.+ ..++||++++++....+.+|.+
T Consensus 69 ~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~ 147 (311)
T d1nr0a1 69 SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQAR 147 (311)
T ss_dssp TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSS
T ss_pred CCCeEeccccCceEeeeeeeccccccccccccccCccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 999999998 899999999887643 56788999999999999 88999988764 5699999999999999999999
Q ss_pred CEEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcC
Q 001403 880 RVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAE 957 (1084)
Q Consensus 880 ~V~~l~~spd~~~-l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~ 957 (1084)
.|++++|+|++++ |++|+.|+.|++||+.+++ ......+|.. .|.+++|+|++++++++ .|+.|++||..
T Consensus 148 ~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~-----~~~~~~~~~~---~i~~v~~~p~~~~l~~~~~d~~v~~~d~~ 219 (311)
T d1nr0a1 148 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-----FKSTFGEHTK---FVHSVRYNPDGSLFASTGGDGTIVLYNGV 219 (311)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-----EEEEECCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ccccccccccceeeecccccccccccccccccc-----cccccccccc---cccccccCccccccccccccccccccccc
Confidence 9999999999985 8899999999999999854 3344445544 79999999999999985 78999999999
Q ss_pred CcceeeEee------cCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEEC
Q 001403 958 ELTCLKQWF------PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAH 1031 (1084)
Q Consensus 958 ~~~~~~~~~------~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1031 (1084)
++.....+. .+|...|++++|+|||++|++|+.||+|+|||+.+++++..+..+.. .....+++.|+
T Consensus 220 ~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~-------~~~~~~~~~~~ 292 (311)
T d1nr0a1 220 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR-------IEDQQLGIIWT 292 (311)
T ss_dssp TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-------GGGCEEEEEEC
T ss_pred cccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCC-------ccceEEEEEec
Confidence 888766542 35789999999999999999999999999999999999877763221 11223456666
Q ss_pred CCCCCEEEEEeCCCcEEEEcC
Q 001403 1032 PLKPTQFAVGLTNGEVYVIEP 1052 (1084)
Q Consensus 1032 p~d~~~l~~~~~dg~v~vw~~ 1052 (1084)
++.|++++.||.|++||+
T Consensus 293 ---~~~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 293 ---KQALVSISANGFINFVNP 310 (311)
T ss_dssp ---SSCEEEEETTCCEEEEET
T ss_pred ---CCEEEEEECCCEEEEEeC
Confidence 468999999999999997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.5e-32 Score=303.29 Aligned_cols=295 Identities=18% Similarity=0.251 Sum_probs=257.1
Q ss_pred cceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
-...++|.||++.|++++|||||++||+|+.| ++|+|||+.++..... +.+|...|.+++|+|+++++
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~D---------g~v~iWd~~~~~~~~~---~~~~~~~v~~v~~~~~~~~l 112 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQD---------GKLIIWDSYTTNKVHA---IPLRSSWVMTCAYAPSGNYV 112 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETT---------TEEEEEETTTTEEEEE---EECSCSCEEEEEECTTSSEE
T ss_pred eeeeEEECCCCCCEEEEEECCCCCEEEEEECC---------CceeeeecccceeEEE---EecccccEEeeEeeccceee
Confidence 35668899999999999999999999999988 9999999998766543 67799999999999999999
Q ss_pred EEEeCCCEEEEEEccCCccc-cceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEE
Q 001403 404 GVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~ 482 (1084)
++|+.|+.+.+|+....... .....+.+|...........+. .++....|.....|+............+...+..
T Consensus 113 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (340)
T d1tbga_ 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189 (340)
T ss_dssp EEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred eeecccceeecccccccccccccceeccccccccccccccccc---ccccccccccccccccccccccccccccceeEee
Confidence 99999999999998765432 2233567788777776666554 4778888999999999888888888888888988
Q ss_pred EeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee
Q 001403 483 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 483 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 562 (1084)
..+.+ .+.++++++.|+.|++||+++......+..+...|.+++|+|++++|++++. ++.|++||+........
T Consensus 190 ~~~~~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~~~~~~~~~ 263 (340)
T d1tbga_ 190 LSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLRADQELMT 263 (340)
T ss_dssp EEECT--TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEEE
T ss_pred ecccc--ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC----CCeEEEEeecccccccc
Confidence 88844 5679999999999999999999999999999999999999999999999986 66799999999888776
Q ss_pred eeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEE
Q 001403 563 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 563 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
+.... +...+.+++|+|++++|++|+.||.|++||+.+++.+..+..|.. .|.+++|+|++++|++|+.||.|+|||
T Consensus 264 ~~~~~-~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~--~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 264 YSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ECCTT-CCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ccccc-ccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 64333 236799999999999999999999999999999999999987654 699999999999999999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-32 Score=305.89 Aligned_cols=343 Identities=17% Similarity=0.257 Sum_probs=247.2
Q ss_pred eeecCCCCCe-EEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEE
Q 001403 382 ALVRDPGVSV-NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 460 (1084)
Q Consensus 382 ~~~~~h~~~V-~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~ 460 (1084)
..|+||...| +|++ +||++||+|+.||+|+|||+.+++.+. ++.+|.++|++++|+|++ +|++|+.|++|+
T Consensus 6 ~tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~ 77 (355)
T d1nexb2 6 TTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVR 77 (355)
T ss_dssp EEEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEE
T ss_pred EEECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCcEEE---EEECCCCCEEEEEEcCCC---EEEEEecccccc
Confidence 3488998886 5555 468999999999999999999987655 788999999999999864 699999999999
Q ss_pred EEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEe
Q 001403 461 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 540 (1084)
Q Consensus 461 vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 540 (1084)
+|+...+........+............+++.++++++.|+.|++||+................ .....+
T Consensus 78 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~--------- 147 (355)
T d1nexb2 78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP-LVFHTP--------- 147 (355)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC-EEESCT---------
T ss_pred cccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceec-cceecc---------
Confidence 9999999888777666655555544446677899999999999999988654433221111100 000000
Q ss_pred eCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceE
Q 001403 541 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 620 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 620 (1084)
............+. ..+. .+.++++.++++..|+.|++||+.+++.+.....+.. .+.++
T Consensus 148 -------------~~~~~~~~~~~~~~---~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~~~ 207 (355)
T d1nexb2 148 -------------EENPYFVGVLRGHM---ASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD--RIYST 207 (355)
T ss_dssp -------------TTCTTEEEEEECCS---SCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEE
T ss_pred -------------ccccceeeeeeecc---cccc--ccccccceeeeecccceeeeeecccccceeeeecccc--ccccc
Confidence 11112222222333 3343 3556788999999999999999999999888875543 57899
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccC
Q 001403 621 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 700 (1084)
Q Consensus 621 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 700 (1084)
.|+|++.++++++.|+.|++|+..++..+..+.+
T Consensus 208 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---------------------------------------------- 241 (355)
T d1nexb2 208 IYDHERKRCISASMDTTIRIWDLENGELMYTLQG---------------------------------------------- 241 (355)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTTCCEEEEECC----------------------------------------------
T ss_pred cccccceeeecccccceEEeeecccccccccccc----------------------------------------------
Confidence 9999999999999999999999887644433322
Q ss_pred ccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCC
Q 001403 701 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 780 (1084)
Q Consensus 701 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1084)
T Consensus 242 -------------------------------------------------------------------------------- 241 (355)
T d1nexb2 242 -------------------------------------------------------------------------------- 241 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEE-EEcCCCCcEEEEEeCCC
Q 001403 781 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSL-AFNPHDNNVIAIGMDDS 858 (1084)
Q Consensus 781 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l-~~s~~d~~~la~g~~dg 858 (1084)
|...|.+++++ +++|++++ ||.|++||+.++..... .|...+.++ ++++ ++++|++|+ ||
T Consensus 242 ------------h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~-~~~~l~~g~-d~ 303 (355)
T d1nexb2 242 ------------HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFYV-SDNILVSGS-EN 303 (355)
T ss_dssp ------------CSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEE--EECTTCCCCCEEEE-CSSEEEEEE-TT
T ss_pred ------------ccccccccccc--cceeeeeecccccccccccccceecc--cccCCceEEEEEcC-CCCEEEEEe-CC
Confidence 44445555554 34666665 67777777766654333 344445444 4566 777777765 89
Q ss_pred eEEEEEcCCceeee-eecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001403 859 TILIYNARSSEVIS-KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 907 (1084)
Q Consensus 859 ~i~iwd~~~~~~~~-~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~ 907 (1084)
.|+|||+++++++. .+.+|.+.|.+++|+|+ .++++++.||+++||.+
T Consensus 304 ~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 304 QFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp EEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred EEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 99999999999885 57889999999999987 57888999999777654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.3e-33 Score=307.11 Aligned_cols=345 Identities=15% Similarity=0.187 Sum_probs=266.5
Q ss_pred eEeecCCCCeE-EEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCC
Q 001403 514 RVDYDAPGLGC-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH 592 (1084)
Q Consensus 514 ~~~~~~~~~~i-~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 592 (1084)
+.++.+|...| +++ ++++++|++++. ++.|++||+.+++.+..+.+|. +.|.+++|+|+ ..|++++.||
T Consensus 5 ~~tL~GH~~~vitc~--~~~~~~l~tgs~----Dg~i~vWd~~~~~~~~~l~~H~---~~V~~l~~s~~-~~l~s~s~D~ 74 (355)
T d1nexb2 5 RTTLRGHMTSVITCL--QFEDNYVITGAD----DKMIRVYDSINKKFLLQLSGHD---GGVWALKYAHG-GILVSGSTDR 74 (355)
T ss_dssp EEEEECCSSSCEEEE--EEETTEEEEEET----TTEEEEEETTTTEEEEEEECCS---SCEEEEEEETT-TEEEEEETTC
T ss_pred cEEECCcCCCcEEEE--EECCCEEEEEeC----CCeEEEEECCCCcEEEEEECCC---CCEEEEEEcCC-CEEEEEeccc
Confidence 45677887765 555 456889999986 6779999999999999999998 89999999985 5899999999
Q ss_pred cEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceee
Q 001403 593 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 672 (1084)
Q Consensus 593 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~ 672 (1084)
.|++|+....+..................+.+++.++++++.|+.|++|++.+..............
T Consensus 75 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~------------- 141 (355)
T d1nexb2 75 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP------------- 141 (355)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC-------------
T ss_pred ccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceec-------------
Confidence 9999999999988887766554445667788999999999999999999988764332221100000
Q ss_pred eeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCC-eEEEeecCCceE
Q 001403 673 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHL 751 (1084)
Q Consensus 673 ~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~ 751 (1084)
.....+... .++....
T Consensus 142 ----------------------------------------------------------~~~~~~~~~~~~~~~~~----- 158 (355)
T d1nexb2 142 ----------------------------------------------------------LVFHTPEENPYFVGVLR----- 158 (355)
T ss_dssp ----------------------------------------------------------EEESCTTTCTTEEEEEE-----
T ss_pred ----------------------------------------------------------cceeccccccceeeeee-----
Confidence 000000000 0000000
Q ss_pred EeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEE
Q 001403 752 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT 830 (1084)
Q Consensus 752 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~ 830 (1084)
.|...+ ..+.+++.+++++. ++.+++||+.+++.+..
T Consensus 159 ----------------------------------------~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~ 196 (355)
T d1nexb2 159 ----------------------------------------GHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI 196 (355)
T ss_dssp ----------------------------------------CCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ----------------------------------------eccccc--cccccccceeeeecccceeeeeecccccceee
Confidence 022222 34556788888887 79999999999999999
Q ss_pred EcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001403 831 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 910 (1084)
Q Consensus 831 ~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~ 910 (1084)
..++...+.++.|+| ++.++++++.|+.|++||+.++..+..+.+|...|.+++|+ +++|++++.||+|++||+.++
T Consensus 197 ~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~ 273 (355)
T d1nexb2 197 LSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDY 273 (355)
T ss_dssp ECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTC
T ss_pred eeccccccccccccc-cceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeeccccccccccccc
Confidence 999999999999999 89999999999999999999999999999999999999996 579999999999999999986
Q ss_pred ceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeC
Q 001403 911 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV 990 (1084)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~ 990 (1084)
.... .. |.. .......+++++.+++++.|++|+|||+++|+++.....+|..+|.+++|+|+ .++++++.
T Consensus 274 ~~~~----~~---~~~--~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~ 343 (355)
T d1nexb2 274 SRKF----SY---HHT--NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEK 343 (355)
T ss_dssp CEEE----EE---ECT--TCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEES
T ss_pred ceec----cc---ccC--CceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEEC
Confidence 5322 11 111 12233567899999999999999999999999987767789999999999987 47888899
Q ss_pred CCcEEEEEc
Q 001403 991 DGTLSIHEA 999 (1084)
Q Consensus 991 dg~i~vwd~ 999 (1084)
||.++||.+
T Consensus 344 dg~~~l~~~ 352 (355)
T d1nexb2 344 DGQSFLEIL 352 (355)
T ss_dssp SSCEEEEEE
T ss_pred CCcEEEEEE
Confidence 999777654
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.5e-33 Score=301.67 Aligned_cols=294 Identities=13% Similarity=0.134 Sum_probs=229.6
Q ss_pred ceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEE
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 404 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la 404 (1084)
...+++.||.+.|++++|||||++||+|+.| ++|+|||++++..... ...+|...|++++|+|+|+++
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~D---------g~v~vWd~~~~~~~~~--~~~~h~~~v~~v~~~~~g~~~- 70 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGKTLFSADAE---------GHINSWDISTGISNRV--FPDVHATMITGIKTTSKGDLF- 70 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTCCEEEC--SSCSCSSCEEEEEECTTSCEE-
T ss_pred ccceEcCCCCCCcEEEEECCCCCEEEEEcCC---------CeEEEEECCCCcEEEE--EcCCCCCcEEEEEeeccceee-
Confidence 4678999999999999999999999999988 9999999988655432 245799999999999999754
Q ss_pred EEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEe
Q 001403 405 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 484 (1084)
Q Consensus 405 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~ 484 (1084)
+++.|+.+++|+...............|...+.+++|+++++ ++++++ ++.+++|+.. +..... ....+.+++
T Consensus 71 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~~-~~~i~~~~~~--~~~~~~--~~~~~~~~~ 143 (299)
T d1nr0a2 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAAC-YKHIAIYSHG--KLTEVP--ISYNSSCVA 143 (299)
T ss_dssp EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEEE-SSEEEEEETT--EEEEEE--CSSCEEEEE
T ss_pred cccceeeEEEeccCCccccccccccccccccccccccccccc--cccccc-cccccccccc--cccccc--ccccccccc
Confidence 566788999999876543333333456788899999999998 455554 6789999843 222222 344577888
Q ss_pred ecccCCCcEEEEEecCCeEEEEECCCCCceE-eecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeee
Q 001403 485 PHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 563 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 563 (1084)
|++ ++.++++++.||.|++||+++..... ....+...|.+++|+|+++++++++. ++.|++||+.++......
T Consensus 144 ~s~--~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~~~~~~~~~~ 217 (299)
T d1nr0a2 144 LSN--DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSVANNFELAHT 217 (299)
T ss_dssp ECT--TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEGGGTTEESCC
T ss_pred ccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccccccccccc
Confidence 854 67899999999999999998766433 44567789999999999999999876 566999999887766544
Q ss_pred eccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCC-CCCCcceEEEecCCCEEEEEECCCeEEEEE
Q 001403 564 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 564 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
.....|...|.+++|+|++++|++|+.||.|++||+.++.......... ....+.++ +++++++|++++.|+.|++||
T Consensus 218 ~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i~iWd 296 (299)
T d1nr0a2 218 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKFWN 296 (299)
T ss_dssp CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEETTSCEEEEE
T ss_pred ccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeCCCEEEEEe
Confidence 4433334899999999999999999999999999998876544333222 22335555 456678999999999999999
Q ss_pred cC
Q 001403 643 TP 644 (1084)
Q Consensus 643 ~~ 644 (1084)
+.
T Consensus 297 l~ 298 (299)
T d1nr0a2 297 VP 298 (299)
T ss_dssp CC
T ss_pred cc
Confidence 74
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.3e-33 Score=312.68 Aligned_cols=264 Identities=11% Similarity=0.037 Sum_probs=210.7
Q ss_pred CCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEE
Q 001403 334 SSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 413 (1084)
Q Consensus 334 ~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~ 413 (1084)
.++|+|++|||||++||+++.| +.|+|||+++..... ...+.+|...|.+++|+|++++||+|+.|++|+
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~---------~~i~iw~~~~~~~~~-~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~ 76 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNN---------HEVHIYEKSGNKWVQ-VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAY 76 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSS---------SEEEEEEEETTEEEE-EEEEECCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred CCCeEEEEECCCCCEEEEEeCC---------CEEEEEECCCCCEEE-EEEecCCCCCEEEEEECCCCCEEEEEECCCeEE
Confidence 4689999999999999999877 999999998765433 234789999999999999999999999999999
Q ss_pred EEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee----eEeccCCCcEEEEeecccC
Q 001403 414 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----YSFEGHGAPVYSLCPHAKE 489 (1084)
Q Consensus 414 iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~----~~~~~h~~~v~~~~~~~~~ 489 (1084)
|||+.++.... ...+.+|...|.+++|+|+++ .+++++.|++|++|+++.+... .....|...|.+++|+|
T Consensus 77 vWd~~~~~~~~-~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-- 151 (371)
T d1k8kc_ 77 VWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-- 151 (371)
T ss_dssp EEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT--
T ss_pred EEeeccccccc-ccccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccccccccc--
Confidence 99998875432 335678999999999999999 8999999999999998766532 34567899999999955
Q ss_pred CCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccc
Q 001403 490 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569 (1084)
Q Consensus 490 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 569 (1084)
++.+|++++.||+|++|+.............. ...+...++......+|.
T Consensus 152 ~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~-- 201 (371)
T d1k8kc_ 152 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP----------------------------WGSKMPFGELMFESSSSC-- 201 (371)
T ss_dssp TSSEEEEEETTSCEEEEECCCTTTSCCCCCBT----------------------------TBSCCCTTCEEEECCCCS--
T ss_pred cccceeccccCcEEEEEeeccCcccccccccc----------------------------ccccccceeeeeeccCcc--
Confidence 67899999999999999987543221110000 001112344455555666
Q ss_pred cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
..|.+++|+|+++++++++.|+.|++||+.+++.+..+..+.. .|.+++|+|+++++++|. |+.+++|.....
T Consensus 202 -~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~ 274 (371)
T d1k8kc_ 202 -GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAGH-DCFPVLFTYDSA 274 (371)
T ss_dssp -SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEET-TSSCEEEEEETT
T ss_pred -CcEEEEEeecccccccccccCCcceEEeeecccceeeeecccc--cceeeeecCCCCEEEEEc-CCceEEEEeeCC
Confidence 8899999999999999999999999999999999999886644 589999999998887654 677777665543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.6e-32 Score=299.38 Aligned_cols=287 Identities=14% Similarity=0.180 Sum_probs=258.5
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
.|.||.+.|++++|+|++++||+|+.||+|+|||+.+++.+. .+..|..+|.+++|+|++. ++++|+.|+.+++|
T Consensus 50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEE
T ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeecc
Confidence 488999999999999999999999999999999999987655 6789999999999999999 89999999999999
Q ss_pred ECCCC----ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEE
Q 001403 463 DAVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 538 (1084)
Q Consensus 463 d~~~g----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 538 (1084)
+.... .....+.+|........... +..+.....+.....+.................+....+.+.+.++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred cccccccccccceeccccccccccccccc---ccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence 97654 34566778887777665532 357888999999999998887777777888889999999999999999
Q ss_pred EeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcc
Q 001403 539 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 618 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 618 (1084)
++. ++.|++||+.+++.+..+.+|. ..|.+++|+|++++|++|+.||.|++||+........+........+.
T Consensus 202 ~~~----d~~v~i~d~~~~~~~~~~~~h~---~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~ 274 (340)
T d1tbga_ 202 GAC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274 (340)
T ss_dssp EET----TTEEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred eec----CceEEEEECCCCcEEEEEeCCC---CCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceE
Confidence 875 6779999999999999999888 899999999999999999999999999999999988887666666799
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecc
Q 001403 619 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 698 (1084)
Q Consensus 619 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 698 (1084)
+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|++++|+ |++.++++++.
T Consensus 275 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s----------------------~d~~~l~s~s~ 332 (340)
T d1tbga_ 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSW 332 (340)
T ss_dssp EEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEET
T ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEe----------------------CCCCEEEEEcc
Confidence 99999999999999999999999999999999999999999999997 67888999999
Q ss_pred cCcccccc
Q 001403 699 ENKSEVEK 706 (1084)
Q Consensus 699 d~~i~~w~ 706 (1084)
||+|++||
T Consensus 333 Dg~v~iWd 340 (340)
T d1tbga_ 333 DSFLKIWN 340 (340)
T ss_dssp TSCEEEEC
T ss_pred CCEEEEeC
Confidence 99999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6.1e-31 Score=284.73 Aligned_cols=293 Identities=12% Similarity=0.096 Sum_probs=227.4
Q ss_pred CeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeE
Q 001403 602 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 681 (1084)
Q Consensus 602 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~ 681 (1084)
|+..+.+.+|.. .|.+++|+|++++|++|+.||.|++||+.+++....+.
T Consensus 2 g~~~~~~~GH~~--~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~---------------------------- 51 (299)
T d1nr0a2 2 GSIDQVRYGHNK--AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP---------------------------- 51 (299)
T ss_dssp TEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS----------------------------
T ss_pred CccceEcCCCCC--CcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc----------------------------
Confidence 567788887654 69999999999999999999999999998876554332
Q ss_pred ecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccC
Q 001403 682 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT 761 (1084)
Q Consensus 682 ~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~ 761 (1084)
..|...|.+++|+|+|. +++++.|+.+++|+.......
T Consensus 52 -----------------------------------------~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~ 89 (299)
T d1nr0a2 52 -----------------------------------------DVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVD 89 (299)
T ss_dssp -----------------------------------------CSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSC
T ss_pred -----------------------------------------CCCCCcEEEEEeeccce-eecccceeeEEEeccCCcccc
Confidence 12566788899999986 667778899999986543210
Q ss_pred cCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEE
Q 001403 762 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL 841 (1084)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l 841 (1084)
. .. . ....+...+.+++++|+|++++++.++.+.+|+... ..... ....+.++
T Consensus 90 ~-----------------~~-~-----~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~~--~~~~~~~~ 142 (299)
T d1nr0a2 90 S-----------------SK-A-----VANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEVP--ISYNSSCV 142 (299)
T ss_dssp T-----------------TS-C-----CEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EEEEE--CSSCEEEE
T ss_pred c-----------------cc-c-----cccccccccccccccccccccccccccccccccccc--ccccc--cccccccc
Confidence 0 00 0 001256678899999999999999999999999643 32332 33467899
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEEcCCceeee-eecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeec
Q 001403 842 AFNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT 920 (1084)
Q Consensus 842 ~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~-~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~ 920 (1084)
+|+| ++++|++|+.||.|++||+.+++... ....|...|++++|+|++++|++++.|+.|++||+.++.... ....
T Consensus 143 ~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~--~~~~ 219 (299)
T d1nr0a2 143 ALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA--HTNS 219 (299)
T ss_dssp EECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES--CCCC
T ss_pred cccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccc
Confidence 9999 89999999999999999999877543 445699999999999999999999999999999998755322 2333
Q ss_pred CCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEe-ecCC-CCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001403 921 PDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQW-FPIS-SVPISQATFSCDCRMVFTSFVDGTLSIH 997 (1084)
Q Consensus 921 ~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~-~~~h-~~~v~~l~fs~dg~~l~t~~~dg~i~vw 997 (1084)
..+|.. .|.+++|+|++++|+++ .|+.|++||+.++...... ...| ...+.++. ++++++|++++.||+|++|
T Consensus 220 ~~~h~~---~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~s~D~~i~iW 295 (299)
T d1nr0a2 220 WTFHTA---KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQDSNIKFW 295 (299)
T ss_dssp CCCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEEETTSCEEEE
T ss_pred cccccc---ccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE-ECCCCEEEEEeCCCEEEEE
Confidence 444544 89999999999999995 7899999999987654332 2333 45666664 5677899999999999999
Q ss_pred EcC
Q 001403 998 EAS 1000 (1084)
Q Consensus 998 d~~ 1000 (1084)
|+.
T Consensus 296 dl~ 298 (299)
T d1nr0a2 296 NVP 298 (299)
T ss_dssp ECC
T ss_pred ecc
Confidence 985
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.4e-31 Score=289.99 Aligned_cols=320 Identities=20% Similarity=0.286 Sum_probs=247.5
Q ss_pred ceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEE
Q 001403 425 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK 504 (1084)
Q Consensus 425 ~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~ 504 (1084)
....++||.+.|.+ +++++|+ +|+||+.||+|+|||+.++++++++.+|.+.|.+++|++ .+|++++.|+.++
T Consensus 8 ~~~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~ 80 (342)
T d2ovrb2 8 SPKVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLK 80 (342)
T ss_dssp CCEEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEE
T ss_pred cCEEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceeccccc
Confidence 33478999999865 4677888 899999999999999999999999999999999999953 4899999999999
Q ss_pred EEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCE
Q 001403 505 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 584 (1084)
Q Consensus 505 iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 584 (1084)
+|+................+...... ...++.+.. ++.+.+|+..+++....+.... .. ...+.+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----d~~i~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~ 149 (342)
T d2ovrb2 81 VWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHV---AA--VRCVQYDGRR 149 (342)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCS---SC--EEEEEECSSC
T ss_pred ccccccccceecccccceeEeeeecc--ccccccccc----ceeEEEeecccccceeeeeccc---cc--ceeeccccce
Confidence 99998877766666666666555443 345555543 6679999999988877776554 22 2234456678
Q ss_pred EEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEE
Q 001403 585 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 664 (1084)
Q Consensus 585 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 664 (1084)
+++++.|+.|++||......+..+..+.. ....+++++.++++++.||.|++||+..++.+....+
T Consensus 150 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~---------- 215 (342)
T d2ovrb2 150 VVSGAYDFMVKVWDPETETCLHTLQGHTN----RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG---------- 215 (342)
T ss_dssp EEEEETTSCEEEEEGGGTEEEEEECCCSS----CEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECC----------
T ss_pred eeeecCCCeEEEeecccceeeEEEcCccc----ccccccCCCCEEEEEeCCCeEEEeecccceeeeEecc----------
Confidence 89999999999999999998888876533 4566777889999999999999999876644332221
Q ss_pred cCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEe
Q 001403 665 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL 744 (1084)
Q Consensus 665 ~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 744 (1084)
T Consensus 216 -------------------------------------------------------------------------------- 215 (342)
T d2ovrb2 216 -------------------------------------------------------------------------------- 215 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcC
Q 001403 745 ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVM 823 (1084)
Q Consensus 745 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~ 823 (1084)
|...+.++++ +++++++++ |+.|++||+.
T Consensus 216 ------------------------------------------------~~~~v~~~~~--~~~~l~s~s~d~~i~iwd~~ 245 (342)
T d2ovrb2 216 ------------------------------------------------HQSLTSGMEL--KDNILVSGNADSTVKIWDIK 245 (342)
T ss_dssp ------------------------------------------------CCSCEEEEEE--ETTEEEEEETTSCEEEEETT
T ss_pred ------------------------------------------------cccceeEEec--CCCEEEEEcCCCEEEEEecc
Confidence 2333334333 334666665 6777777777
Q ss_pred CceeEEEEcC---CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec-----ccccCEEEEEEcCCCCEEEE
Q 001403 824 TFKTILTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-----GHSKRVTGLVFSDALNILVS 895 (1084)
Q Consensus 824 ~~~~~~~~~~---~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~-----~h~~~V~~l~~spd~~~l~s 895 (1084)
..+....+.. |...+.++++++ +++++|+.||+|++||+.+++.+..+. +|.+.|++++|+|++.+||+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~ 322 (342)
T d2ovrb2 246 TGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV 322 (342)
T ss_dssp TCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred cccccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEE
Confidence 7776666654 445666776654 599999999999999999999887763 58889999999999999999
Q ss_pred EeCCCc----EEEEeCCC
Q 001403 896 SGGDAQ----IFVWDVDG 909 (1084)
Q Consensus 896 ~s~dg~----I~iwd~~~ 909 (1084)
|+.||+ |++||++.
T Consensus 323 g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 323 GSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp ECSSSSSCCEEEEEECCC
T ss_pred EeCCCCCeeEEEEEeCCC
Confidence 999996 99999875
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.6e-31 Score=295.12 Aligned_cols=305 Identities=13% Similarity=0.120 Sum_probs=235.8
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCce--EeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 001403 522 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 599 (1084)
Q Consensus 522 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 599 (1084)
.+|++++|+|||++|++++. ++.|++||..+++ .+..+.+|. ++|.+++|+|++++|++++.|++|++||+
T Consensus 8 ~pIt~~~~s~dg~~la~~~~----~~~i~iw~~~~~~~~~~~~l~gH~---~~V~~l~fsp~~~~l~s~s~D~~i~vWd~ 80 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPN----NHEVHIYEKSGNKWVQVHELKEHN---GQVTGVDWAPDSNRIVTCGTDRNAYVWTL 80 (371)
T ss_dssp SCCCEEEECTTSSEEEEECS----SSEEEEEEEETTEEEEEEEEECCS---SCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeC----CCEEEEEECCCCCEEEEEEecCCC---CCEEEEEECCCCCEEEEEECCCeEEEEee
Confidence 47999999999999999875 6679999998775 566778887 89999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCce
Q 001403 600 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 679 (1084)
Q Consensus 600 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~ 679 (1084)
.++.....+....+...|.+++|+|+++.+++++.|+.+++|+...........
T Consensus 81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~-------------------------- 134 (371)
T d1k8kc_ 81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK-------------------------- 134 (371)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE--------------------------
T ss_pred cccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccc--------------------------
Confidence 988877666655555679999999999999999999999999987543221111
Q ss_pred eEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCc
Q 001403 680 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 759 (1084)
Q Consensus 680 ~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~ 759 (1084)
.....|...|.+++|+|++++|++++.||.+++|+.....
T Consensus 135 ----------------------------------------~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~ 174 (371)
T d1k8kc_ 135 ----------------------------------------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE 174 (371)
T ss_dssp ----------------------------------------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT
T ss_pred ----------------------------------------ccccccccccccccccccccceeccccCcEEEEEeeccCc
Confidence 0011256788999999999999999999999999976543
Q ss_pred cCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCe
Q 001403 760 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTA 838 (1084)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i 838 (1084)
.... .....|+......... .....|...|.+++|+|+|++|++++ |+.|++||+.+++.+..+..|..+|
T Consensus 175 ~~~~------~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 246 (371)
T d1k8kc_ 175 VEER------PAPTPWGSKMPFGELM--FESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPL 246 (371)
T ss_dssp TSCC------CCCBTTBSCCCTTCEE--EECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCE
T ss_pred cccc------cccccccccccceeee--eeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccc
Confidence 2111 1111222222111111 11224888999999999999999998 7999999999999999999999999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcCC--ceee---------------------------------------eeeccc
Q 001403 839 TSLAFNPHDNNVIAIGMDDSTILIYNARS--SEVI---------------------------------------SKLEGH 877 (1084)
Q Consensus 839 ~~l~~s~~d~~~la~g~~dg~i~iwd~~~--~~~~---------------------------------------~~l~~h 877 (1084)
.+++|+| ++++|++|. |+.+++|.... +... .....|
T Consensus 247 ~s~~fs~-d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H 324 (371)
T d1k8kc_ 247 LAVTFIT-ESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLH 324 (371)
T ss_dssp EEEEEEE-TTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSS
T ss_pred eeeeecC-CCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccc
Confidence 9999999 888888765 67666665432 2110 000138
Q ss_pred ccCEEEEEEcCCC----CEEEEEeCCCcEEEEeCCC
Q 001403 878 SKRVTGLVFSDAL----NILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 878 ~~~V~~l~~spd~----~~l~s~s~dg~I~iwd~~~ 909 (1084)
.+.|+++++++++ ..++|+|.||.|+|||+++
T Consensus 325 ~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 325 KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 8899999998755 4689999999999999976
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-30 Score=282.51 Aligned_cols=329 Identities=16% Similarity=0.224 Sum_probs=260.7
Q ss_pred ceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEE
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 404 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la 404 (1084)
+..++|+||++.|.+ ++++||++||+|+.| ++|+|||+.+++... .+.+|...|.+++|+|+ +|+
T Consensus 7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~D---------g~i~vWd~~~~~~~~---~~~~h~~~V~~v~~~~~--~l~ 71 (342)
T d2ovrb2 7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDD---------NTLKVWSAVTGKCLR---TLVGHTGGVWSSQMRDN--III 71 (342)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETT---------SCEEEEETTTCCEEE---ECCCCSSCEEEEEEETT--EEE
T ss_pred CcCEEECCcCCceEE-EEEECCCEEEEEeCC---------CeEEEEECCCCCEEE---EEeCCCCCEEEEEeCCC--ccc
Confidence 456789999999976 588899999999988 999999998876543 37889999999999975 999
Q ss_pred EEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEe
Q 001403 405 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 484 (1084)
Q Consensus 405 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~ 484 (1084)
+|+.|+.+++|+........ ....+...+....+.+ . .++.+..|+.+.+|+..+++....+..+........
T Consensus 72 s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (342)
T d2ovrb2 72 SGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ 144 (342)
T ss_dssp EEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEE
T ss_pred cceeccccccccccccccee---cccccceeEeeeeccc--c--cccccccceeEEEeecccccceeeeecccccceeec
Confidence 99999999999998865433 3445555566555543 3 577888999999999999998888776665555443
Q ss_pred ecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeee
Q 001403 485 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 564 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 564 (1084)
. ....+++++.|+.|++||.........+..+...+..+ ++++.++++++. ++.|++||+.+++.+..+.
T Consensus 145 ~----~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~----dg~i~~~d~~~~~~~~~~~ 214 (342)
T d2ovrb2 145 Y----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSL----DTSIRVWDVETGNCIHTLT 214 (342)
T ss_dssp E----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEET----TSCEEEEETTTCCEEEEEC
T ss_pred c----ccceeeeecCCCeEEEeecccceeeEEEcCcccccccc--cCCCCEEEEEeC----CCeEEEeecccceeeeEec
Confidence 3 33578999999999999999888888887777665554 457889999886 6679999999999999999
Q ss_pred ccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 565 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 565 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
+|. ..+.++++++ +++++++.||.|++||....+....+..+... .....++.++++++++++.||.|++||+.
T Consensus 215 ~~~---~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~ 288 (342)
T d2ovrb2 215 GHQ---SLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFNKNFVITSSDDGTVKLWDLK 288 (342)
T ss_dssp CCC---SCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSC-SSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred ccc---cceeEEecCC--CEEEEEcCCCEEEEEeccccccccccccccee-eeceeecccCCCeeEEEcCCCEEEEEECC
Confidence 888 7788777754 69999999999999999999888888654321 22344455567899999999999999999
Q ss_pred CCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCcc
Q 001403 645 ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 724 (1084)
Q Consensus 645 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 724 (1084)
+++.+..+... ...+
T Consensus 289 tg~~i~~~~~~-----------------------------------------------------------------~~~~ 303 (342)
T d2ovrb2 289 TGEFIRNLVTL-----------------------------------------------------------------ESGG 303 (342)
T ss_dssp TCCEEEEEEEC-----------------------------------------------------------------TTGG
T ss_pred CCCEEEEEecc-----------------------------------------------------------------cCCC
Confidence 98776554311 0112
Q ss_pred ccceEEEEEEecCCCeEEEeecCCc----eEEeecc
Q 001403 725 KANKISRLTYNNGGQAIFALASNGV----HLMWRWP 756 (1084)
Q Consensus 725 ~~~~i~~l~~s~~g~~l~~~~~dg~----i~vw~~~ 756 (1084)
|...|.+++|+|++..+++++.||+ +++||++
T Consensus 304 ~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 304 SGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp GTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 6678899999999998889888885 7888865
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-30 Score=285.00 Aligned_cols=291 Identities=12% Similarity=0.177 Sum_probs=227.8
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCC-CCCeEEEEEcC--CCCEEEEEeCCCEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSP--DGSLLGVAYSKHIV 412 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h-~~~V~~v~fsp--dg~~las~~~dg~v 412 (1084)
.+.+++|+|+|+.||++.-+ ...|+.|+.......... .+.+| ...|++++|+| +|++||+|+.||+|
T Consensus 19 ~~t~l~~~~~~~~la~~~~~--------~~~i~~~~~~~~~~~~~~-~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i 89 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGK--------SAFVRCLDDGDSKVPPVV-QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKV 89 (325)
T ss_dssp CCCCCEEETTTTEEEEEETT--------EEEEEECCSSCCSSCSEE-EECTTTTSCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred CeEEEEECCCCCEEEEEeCC--------CEEEEEEeCCCCCccceE-EEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCE
Confidence 56889999999999986422 134566766544333222 25566 57899999998 67899999999999
Q ss_pred EEEEccCCccccce-----eeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecc
Q 001403 413 QLYAYHGGSDARQQ-----LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 487 (1084)
Q Consensus 413 ~iwd~~~~~~~~~~-----~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~ 487 (1084)
+|||+..++..... ..+..|.++|.+++|+++++.+..++++.++.+++|+.++++.+..+.+|...|.+++|++
T Consensus 90 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 169 (325)
T d1pgua1 90 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ 169 (325)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECS
T ss_pred EEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccc
Confidence 99999876654322 1345688899999999999953333445578899999999999999999999999999976
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCCceEee---cCCCCeEEEEEEcCC-CCEEEEEeeCCCCCeeEEEecCCCceEeeee
Q 001403 488 KENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNESEGAIKRTY 563 (1084)
Q Consensus 488 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~s~d-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 563 (1084)
..+ .++++++.||.+++||....+..... ..+...|.+++|+|+ +.++++++. ++.|++||.++++.+..+
T Consensus 170 ~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~----d~~i~iwd~~~~~~~~~l 244 (325)
T d1pgua1 170 SRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCFDGKSGEFLKYI 244 (325)
T ss_dssp SSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEEETTTCCEEEEC
T ss_pred ccc-ceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc----ccceeeeeeccccccccc
Confidence 532 46788999999999999876655443 345667999999997 578888875 667999999999999999
Q ss_pred eccccccCceEEEEEc---CCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecC-CCEEEEEECCCeEE
Q 001403 564 QGLQLQHNSVSVVHFD---TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIK 639 (1084)
Q Consensus 564 ~~~~~~~~~v~~~~~s---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~ 639 (1084)
.+|. ..+..+.|+ |++++|++++.|+.|+|||+.+++++..+..+.+...+..+++.+. +.++++++.||.|+
T Consensus 245 ~~~~---~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~ 321 (325)
T d1pgua1 245 EDDQ---EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321 (325)
T ss_dssp CBTT---BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEE
T ss_pred cccc---cccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEE
Confidence 9877 454444443 6889999999999999999999999999887766544555555543 34889999999999
Q ss_pred EEEc
Q 001403 640 ILET 643 (1084)
Q Consensus 640 iwd~ 643 (1084)
+||+
T Consensus 322 vwdl 325 (325)
T d1pgua1 322 FYEL 325 (325)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9985
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.6e-29 Score=276.43 Aligned_cols=287 Identities=13% Similarity=0.137 Sum_probs=219.6
Q ss_pred ceEEEEEEecCCCeEEEeecCC-ceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCC-CCCccEEEecC
Q 001403 727 NKISRLTYNNGGQAIFALASNG-VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS-QEAVPCFALSK 804 (1084)
Q Consensus 727 ~~i~~l~~s~~g~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~s~ 804 (1084)
..+.+++|+|+|+.++.++.+. .++.|+...... .....+. +| ...|++++|+|
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~----------------------~~~~~~~--gh~~~~v~~v~fsP 73 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV----------------------PPVVQFT--GHGSSVVTTVKFSP 73 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS----------------------CSEEEEC--TTTTSCEEEEEECS
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc----------------------cceEEEe--CCCCCCEEEEEEee
Confidence 3456889999999988876553 344444221110 1111111 24 56899999998
Q ss_pred --CCCEEEEEe-CCeEEEEEcCCcee--------EEEEcCCCCCeEEEEEcCCCCcEEEEEeC--CCeEEEEEcCCceee
Q 001403 805 --NDAYLFSAS-GGVISLYIVMTFKT--------ILTIMPPSPTATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVI 871 (1084)
Q Consensus 805 --dg~~l~~~s-dg~i~vwd~~~~~~--------~~~~~~~~~~i~~l~~s~~d~~~la~g~~--dg~i~iwd~~~~~~~ 871 (1084)
+|++|++++ ||+|++||+..++. ...+..|.+.|.+++|++ ++++|++++. ++.+++|+..+++.+
T Consensus 74 ~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (325)
T d1pgua1 74 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSL 152 (325)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEE
T ss_pred CCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccc
Confidence 678999998 89999999875432 233556888999999999 8888887764 678999999999999
Q ss_pred eeecccccCEEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccC-CCEEEE-EeC
Q 001403 872 SKLEGHSKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL-VHE 948 (1084)
Q Consensus 872 ~~l~~h~~~V~~l~~spd~~~-l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~la~-~~d 948 (1084)
..+.+|...|++++|+|++.+ +++++.|+.|++||+...+... ......++. ..|.+++|+|| +.+|++ +.|
T Consensus 153 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~--~~~~~~~~~---~~v~~v~~~pd~~~~l~s~~~d 227 (325)
T d1pgua1 153 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQG---SFVRDVEFSPDSGEFVITVGSD 227 (325)
T ss_dssp EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCTT---CCEEEEEECSTTCCEEEEEETT
T ss_pred eeeeecccccccccccccccceEEEeecccccccccccccccce--ecccccCCC---CccEEeeeccccceeccccccc
Confidence 999999999999999999875 6789999999999998755332 233334444 37999999997 678887 578
Q ss_pred CeEEEEEcCCcceeeEeecCCCCCEEEEEEc---cCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceee
Q 001403 949 THLAIYEAEELTCLKQWFPISSVPISQATFS---CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1025 (1084)
Q Consensus 949 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs---~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1025 (1084)
+.|++||+.+++.+.. +.+|..++.++.|+ +||++|++++.|+.|+|||+.+++.+..+.... +...+..
T Consensus 228 ~~i~iwd~~~~~~~~~-l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~------~~~~~~~ 300 (325)
T d1pgua1 228 RKISCFDGKSGEFLKY-IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK------QQLGNQQ 300 (325)
T ss_dssp CCEEEEETTTCCEEEE-CCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCT------TCGGGCE
T ss_pred cceeeeeecccccccc-ccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecC------CcccCeE
Confidence 9999999999998887 44787777777776 789999999999999999999999887766221 1223444
Q ss_pred eEEEECCCCCCEEEEEeCCCcEEEEcC
Q 001403 1026 HAIAAHPLKPTQFAVGLTNGEVYVIEP 1052 (1084)
Q Consensus 1026 ~~~~~~p~d~~~l~~~~~dg~v~vw~~ 1052 (1084)
+++.+.+ +..|++|+.||.|++||+
T Consensus 301 ~~~~~~~--~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 301 VGVVATG--NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred EEEEECC--CCEEEEEECCCEEEEEEC
Confidence 5566664 468999999999999996
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.4e-27 Score=260.79 Aligned_cols=297 Identities=9% Similarity=0.035 Sum_probs=217.9
Q ss_pred ceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC-CCEE
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLL 403 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd-g~~l 403 (1084)
+.++.+++|++.|++++|||||++||+++.| ++|+|||+.+...........+|..+|.+++|+|+ +.+|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~D---------g~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l 72 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWD---------GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETT---------SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECC---------CeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEE
Confidence 3567889999999999999999999999999 99999999876554443334569999999999986 5689
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeeccc-ccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceee----EeccCCC
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY----SFEGHGA 478 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~----~~~~h~~ 478 (1084)
++|+.|+.|++|++..+.... ....+. .......+.+++. .+++++.|+++++||++++.... ....+..
T Consensus 73 ~sg~~d~~v~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~ 147 (342)
T d1yfqa_ 73 YVGTVQGEILKVDLIGSPSFQ---ALTNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT 147 (342)
T ss_dssp EEEETTSCEEEECSSSSSSEE---ECBSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS
T ss_pred EEcccccceeeeecccccccc---cccccccccccccccccccc--cccccccccccceeeccccccceeeecccccccc
Confidence 999999999999999876544 233333 3344555666666 79999999999999987554332 2222222
Q ss_pred --cEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE---eecCCCCeEEEEEE-cCCCCEEEEEeeCCCCCeeEEEe
Q 001403 479 --PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAY-SANGRRLFSCGTSKEGESFLVEW 552 (1084)
Q Consensus 479 --~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~-s~d~~~l~~~~~~~~~~~~i~~w 552 (1084)
....+.+ ..++..+++++.||.|++|++....... ........+.+..+ ..++..+++++. ++.+.+|
T Consensus 148 ~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----dg~~~v~ 221 (342)
T d1yfqa_ 148 KVKNKIFTM--DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----DGRVAVE 221 (342)
T ss_dssp SSCCCEEEE--EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----TSEEEEE
T ss_pred cceeeeeee--eccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC----CCeEEEE
Confidence 2223333 3355789999999999999998765432 22333334555444 456778888775 6668888
Q ss_pred cCCCceEee------------eeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceE
Q 001403 553 NESEGAIKR------------TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 620 (1084)
Q Consensus 553 d~~~~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 620 (1084)
+........ ....+..+...+.+++|+|++++|++|+.||.|++||+.+++.+..+.... .+..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~---~~~~~ 298 (342)
T d1yfqa_ 222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN---EDSVV 298 (342)
T ss_dssp ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS---SSEEE
T ss_pred EecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC---CCEEE
Confidence 765432211 111122234678999999999999999999999999999999998876432 35678
Q ss_pred EEecCCCEEEEEECCCeEEEEEcC
Q 001403 621 CFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 621 ~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
+|+|+++++++++.|+.+++|...
T Consensus 299 ~~s~~~~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 299 KIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEECSSEEEEEEECTHHHHCSSS
T ss_pred EEEeCCCEEEEEEcCCcEEEeeee
Confidence 999999999999999888887643
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.6e-26 Score=246.25 Aligned_cols=271 Identities=11% Similarity=0.104 Sum_probs=218.6
Q ss_pred CCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccc
Q 001403 646 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 725 (1084)
Q Consensus 646 ~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 725 (1084)
.++++.+++|...|++++++| +++++.||+|++|+..... ..|
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~--------------------------l~sgs~Dg~v~~Wd~~~~~-----------~~h 45 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP--------------------------LISGSYDGRIMEWSSSSMH-----------QDH 45 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT--------------------------TEEEETTSCEEETTTTEEE-----------CCC
T ss_pred cceeEEECCCCCceEEEEECc--------------------------EEEEeCCCeEEEEECCCCC-----------CCC
Confidence 357788999999999998862 8899999999999986432 248
Q ss_pred cceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCC
Q 001403 726 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 805 (1084)
Q Consensus 726 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 805 (1084)
...|.++.+++++ .+++++.|+++++|++.... ....+.+++++++
T Consensus 46 ~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~---------------------------------~~~~~~~~~~~~~ 91 (287)
T d1pgua2 46 SNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE---------------------------------FGSQPKVASANND 91 (287)
T ss_dssp CSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE---------------------------------CSSCEEEEEECSS
T ss_pred CCCEEEEEecCCC-eEEEEeeccccccccccccc---------------------------------cccceeeeeeccC
Confidence 8899999998765 57899999999999864321 2345678899999
Q ss_pred CCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCC-eEEEEEcCCceeeeeec-ccccCEEE
Q 001403 806 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLE-GHSKRVTG 883 (1084)
Q Consensus 806 g~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg-~i~iwd~~~~~~~~~l~-~h~~~V~~ 883 (1084)
+..++++.++.+.+|+..+++....+..+. . ..++++ ++..+++++.++ .|++|++...+....+. .|.+.+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~ 167 (287)
T d1pgua2 92 GFTAVLTNDDDLLILQSFTGDIIKSVRLNS-P--GSAVSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSY 167 (287)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSS-C--EEEEEE-CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEE
T ss_pred CceEEEeecccceeeeccceeeeeeccccc-e--eeeeec-cCcceeeeccccceeeeeeccccceeeeeeeccCCceeE
Confidence 999999889999999999999888877443 3 345666 566777777664 79999998776655544 47889999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccC----------CCEEEE-EeCCeEE
Q 001403 884 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD----------QTRFLL-VHETHLA 952 (1084)
Q Consensus 884 l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d----------g~~la~-~~d~~i~ 952 (1084)
++|+|++.+|++++.||.|++||+.+++... ....+|.. .|.+++|+|+ +.+||+ +.|++|+
T Consensus 168 ~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~----~~~~~h~~---~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~ 240 (287)
T d1pgua2 168 ISISPSETYIAAGDVMGKILLYDLQSREVKT----SRWAFRTS---KINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 240 (287)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEE----CCSCCCSS---CEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred EEeccCccccccccccccccceeeccccccc----cccccccc---ccceeeecccccccccccCCCCeeEeecCCCeEE
Confidence 9999999999999999999999999865322 23445554 7999999875 467888 5789999
Q ss_pred EEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001403 953 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 999 (1084)
Q Consensus 953 vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~ 999 (1084)
+||+.++........+|...|++++|+|++ .|++++.||+|++|++
T Consensus 241 iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 241 IYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred EEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 999987665555577899999999999987 5889999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=7.3e-26 Score=254.69 Aligned_cols=270 Identities=11% Similarity=0.108 Sum_probs=200.9
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccc---cceeeeecccccEeEEEe------ecCCCcEEEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAF------SAPCKQISVITC 453 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~---~~~~~l~~h~~~V~~l~~------s~d~~~l~l~s~ 453 (1084)
..++|...|.++++++ ++|++++.|++|+|||..+.+.. ........|...+..+.. +.... .+++++
T Consensus 9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~ 85 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL-CLVATT 85 (393)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE-EEEEEE
T ss_pred cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCC-cEEEEE
Confidence 4678999999999875 69999999999999998765431 111122334443333322 22111 267899
Q ss_pred eCCCcEEEEECCCCceeeEe----------ccCCCcEEEEeecccCC---CcEEEEEecCCeEEEEECCCCCc-------
Q 001403 454 GDDKTIKVWDAVTGSRTYSF----------EGHGAPVYSLCPHAKEN---IHFIFSISVDGKIKAWLYDSLGA------- 513 (1084)
Q Consensus 454 ~~d~~i~vwd~~~g~~~~~~----------~~h~~~v~~~~~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~------- 513 (1084)
+.||.|++|++..+.....+ ..+...+..+++.+..+ +.++++++.||.+++|++.....
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence 99999999997654332111 22445677777765432 57899999999999999853221
Q ss_pred -----------eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccc---cccCceEEEEEc
Q 001403 514 -----------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ---LQHNSVSVVHFD 579 (1084)
Q Consensus 514 -----------~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~---~~~~~v~~~~~s 579 (1084)
......+...+.+++|+|++ ++++++. ++.|++||+.+++.+..+.... .|...|.+++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~----Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 240 (393)
T d1sq9a_ 166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240 (393)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeC----CCcEEEEeecccccccccccccccccccceEEEcccc
Confidence 00112333467899999998 7788775 7789999999998877665322 234899999999
Q ss_pred CCCCEEEEEECCCc---EEEEECCCCeEEEEEcCC-----------CCCCCcceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 580 TAKDQILAAGDDHV---IKIWDMNKVQLLTTIDAG-----------GGLPENPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 580 ~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~-----------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
|++++|++|+.|++ |++||+.+++.+..+... ++...|.+++|+|++++|++++.|++|++||+.+
T Consensus 241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 320 (393)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence 99999999998874 899999999998887532 3445699999999999999999999999999999
Q ss_pred CCeeeecccccccee
Q 001403 646 SNSVDAAGVLSDNLR 660 (1084)
Q Consensus 646 ~~~~~~~~~~~~~i~ 660 (1084)
++++..+++|.+.|.
T Consensus 321 g~~~~~l~gH~~~v~ 335 (393)
T d1sq9a_ 321 KERITTLNMHCDDIE 335 (393)
T ss_dssp TEEEEEEECCGGGCS
T ss_pred CCEEEEECCcCCccc
Confidence 999999999998875
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.8e-26 Score=247.42 Aligned_cols=269 Identities=10% Similarity=0.140 Sum_probs=214.0
Q ss_pred ceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEE
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 404 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la 404 (1084)
+.+++|+||.+.|++++|+| |++|+.| ++|++||+.+. ..+|...|.+++|++++ .++
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~D---------g~v~~Wd~~~~--------~~~h~~~V~~~~~~~~~-~~~ 61 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP----LISGSYD---------GRIMEWSSSSM--------HQDHSNLIVSLDNSKAQ-EYS 61 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT----TEEEETT---------SCEEETTTTEE--------ECCCCSCEEEEECCSTT-CCE
T ss_pred ceeEEECCCCCceEEEEECc----EEEEeCC---------CeEEEEECCCC--------CCCCCCCEEEEEecCCC-eEE
Confidence 56789999999999999998 9999988 99999998764 34699999999999765 578
Q ss_pred EEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEe
Q 001403 405 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 484 (1084)
Q Consensus 405 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~ 484 (1084)
+++.|++|++|++...+ ....+.++++++++. .+++ +.++.+.+|+..+++.+..+..+ ..+.++.
T Consensus 62 s~s~D~~v~~w~~~~~~----------~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 127 (287)
T d1pgua2 62 SISWDDTLKVNGITKHE----------FGSQPKVASANNDGF--TAVL-TNDDDLLILQSFTGDIIKSVRLN-SPGSAVS 127 (287)
T ss_dssp EEETTTEEEETTEEEEE----------CSSCEEEEEECSSSE--EEEE-ETTSEEEEEETTTCCEEEEEECS-SCEEEEE
T ss_pred EEeeccccccccccccc----------cccceeeeeeccCCc--eEEE-eecccceeeeccceeeeeecccc-ceeeeee
Confidence 99999999999976532 233567888999887 4554 45778999999999988887644 4454443
Q ss_pred ecccCCCcEEEEEecC-CeEEEEECCCCCceEeec-CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee
Q 001403 485 PHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 562 (1084)
. ++..+++++.+ +.+++|++.......... .+...+.+++|+|++.+|++++. ++.|++||+.+++....
T Consensus 128 ~----~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d~~~~~~~~~ 199 (287)
T d1pgua2 128 L----SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYDLQSREVKTS 199 (287)
T ss_dssp E----CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEEC
T ss_pred c----cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc----cccccceeecccccccc
Confidence 3 34567666666 479999987665555443 35668999999999999999986 66699999999887543
Q ss_pred -eeccccccCceEEEEEcCC----------CCEEEEEECCCcEEEEECCC-CeEEEEEcCCCCCCCcceEEEecCCCEEE
Q 001403 563 -YQGLQLQHNSVSVVHFDTA----------KDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLA 630 (1084)
Q Consensus 563 -~~~~~~~~~~v~~~~~s~~----------~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 630 (1084)
+.+|. ..|.+++|+|. +.++++|+.|++|++||+.+ ++.+..+..|. ..|.+++|+|++ .++
T Consensus 200 ~~~~h~---~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~--~~V~~v~~~~~~-~l~ 273 (287)
T d1pgua2 200 RWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK--DGVNNLLWETPS-TLV 273 (287)
T ss_dssp CSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSST--TCEEEEEEEETT-EEE
T ss_pred cccccc---cccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCC--CCeEEEEECCCC-EEE
Confidence 55666 88999999875 46899999999999999977 55666666554 469999999986 588
Q ss_pred EEECCCeEEEEEc
Q 001403 631 VIANENRIKILET 643 (1084)
Q Consensus 631 ~~~~dg~i~iwd~ 643 (1084)
+++.|+.|++|++
T Consensus 274 s~g~D~~v~iW~i 286 (287)
T d1pgua2 274 SSGADACIKRWNV 286 (287)
T ss_dssp EEETTSCEEEEEE
T ss_pred EEECCCeEEEEEE
Confidence 9999999999985
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=5.2e-26 Score=257.58 Aligned_cols=359 Identities=11% Similarity=0.036 Sum_probs=253.8
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccc--cceeeeecccccEeEEEee
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFS 442 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~--~~~~~l~~h~~~V~~l~~s 442 (1084)
++|.|||..+...... +..| ..+..++|||||+++++++.|++|.+||+.+++.. ..+....+|.+.+.+.+|+
T Consensus 42 g~v~v~D~~t~~v~~~---~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~S 117 (432)
T d1qksa2 42 GQIALIDGSTYEIKTV---LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEG 117 (432)
T ss_dssp TEEEEEETTTCCEEEE---EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTT
T ss_pred CEEEEEECCCCcEEEE---EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccC
Confidence 8999999998777655 3334 46999999999999999999999999999987642 2222344677788888999
Q ss_pred cCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCC
Q 001403 443 APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL 522 (1084)
Q Consensus 443 ~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 522 (1084)
|||++ ++++++.+++|++||.++++.+..+..|...+..+.+.+. .
T Consensus 118 pDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~---------------------------------~ 163 (432)
T d1qksa2 118 WEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE---------------------------------P 163 (432)
T ss_dssp CTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC---------------------------------C
T ss_pred CCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCC---------------------------------C
Confidence 99995 4578888999999999999999988877655444433222 1
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCC
Q 001403 523 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNK 601 (1084)
Q Consensus 523 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~ 601 (1084)
....+.++|+|..++.... .++.|.+||..+++......... ...+..++|+|+|+++++++ .++.+.++|..+
T Consensus 164 ~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~--g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~ 238 (432)
T d1qksa2 164 RVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISA--ERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 238 (432)
T ss_dssp CEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEEC--CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred ceeEEEECCCCCEEEEEEc---cCCeEEEEEccCCCcceEEEEcc--cCccccceECCCCCEEEEeccccceEEEeeccc
Confidence 3345678899988776543 25679999988876554433222 25688999999999888876 456899999999
Q ss_pred CeEEEEEcCCCC---CCCcceEEEecCCCEEEEEE-CCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccC
Q 001403 602 VQLLTTIDAGGG---LPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 677 (1084)
Q Consensus 602 ~~~~~~~~~~~~---~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~ 677 (1084)
++....+..... ........+...+...+... .++.+.+|.......
T Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~----------------------------- 289 (432)
T d1qksa2 239 GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH----------------------------- 289 (432)
T ss_dssp TEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC-----------------------------
T ss_pred ceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccc-----------------------------
Confidence 998887764321 11122333333333333332 255666665442210
Q ss_pred ceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccC
Q 001403 678 GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 757 (1084)
Q Consensus 678 ~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~ 757 (1084)
..+...+....+++++..+++++.+...++|....
T Consensus 290 ---------------------------------------------~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~ 324 (432)
T d1qksa2 290 ---------------------------------------------PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT 324 (432)
T ss_dssp ---------------------------------------------TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECT
T ss_pred ---------------------------------------------cccccEEEEEEEcCCCCeEEEEecCCccceeeccc
Confidence 01344567778888888888888888888876432
Q ss_pred CccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCC
Q 001403 758 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSP 836 (1084)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~ 836 (1084)
.. .+......+++ ||++.+++++ |+.+++|++.++..+ ..|..
T Consensus 325 ~~--------------------------------~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l---~~~~~ 368 (432)
T d1qksa2 325 LN--------------------------------PEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI---TEGQP 368 (432)
T ss_dssp TC--------------------------------SSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC---CSSCC
T ss_pred CC--------------------------------CCCCeeeEEEE-EechhhcccccCCceEeccccccccc---CCCCC
Confidence 11 13333445565 8999999998 789999998765433 35667
Q ss_pred CeEEEEEcCCCCcEEEEEe-----CCCeEEEEEcCCceeeeeeccc
Q 001403 837 TATSLAFNPHDNNVIAIGM-----DDSTILIYNARSSEVISKLEGH 877 (1084)
Q Consensus 837 ~i~~l~~s~~d~~~la~g~-----~dg~i~iwd~~~~~~~~~l~~h 877 (1084)
.+.+++||| ||++|+++. .+|.|.|||..++++...+.+.
T Consensus 369 ~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 369 RVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp EEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred cEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence 899999999 888775553 4689999999999988877753
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.8e-25 Score=238.16 Aligned_cols=271 Identities=17% Similarity=0.250 Sum_probs=220.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
..+|...|+|++ +||++||+|+.||+|+|||+.+++.++ ++.+|.+.|++++| +++ +|++|+.|+.|++|+
T Consensus 11 ~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 11 RSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD 81 (293)
T ss_dssp CCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred cCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEeeeec--ccc--eeecccccccccccc
Confidence 556888999865 579999999999999999999987665 78899999999987 566 899999999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc---eEeecCCCCeEEEEEEcCCCCEEEEEe
Q 001403 464 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLFSCG 540 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~~l~~~~ 540 (1084)
+..+........+......... ....++++..++.+.+|+...... ...+..+...+..+.+.+ ..+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s 155 (293)
T d1p22a2 82 VNTGEMLNTLIHHCEAVLHLRF----NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS 155 (293)
T ss_dssp SSSCCEEEEECCCCSCEEEEEC----CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEE
T ss_pred cccccccccccccccccccccc----cccceeecccccceeEeeccccccccccccccccccccccceecc--ccccccc
Confidence 9999888877766665554432 335899999999999999987654 334556666777766654 4566665
Q ss_pred eCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceE
Q 001403 541 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 620 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 620 (1084)
. ++.+++||..+++.+..+.++. ..+..+.++ +..+++++.||.|++||+.++..+.....+.. . ..
T Consensus 156 ~----d~~i~~~d~~~~~~~~~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~--v~ 222 (293)
T d1p22a2 156 G----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--L--VR 222 (293)
T ss_dssp T----TSEEEEEETTTCCEEEEEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--C--EE
T ss_pred C----CCceeeecCCCCcEEEEEcccc---cccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce--e--ee
Confidence 4 6779999999999999998887 677777665 56899999999999999999999988876543 2 34
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCC---------CCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCC
Q 001403 621 CFNKNGTLLAVIANENRIKILETPE---------SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 691 (1084)
Q Consensus 621 ~~s~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~ 691 (1084)
.+++++.+|++++.||.|++||+.. ...+..+.+|...|.+++++ +.
T Consensus 223 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d------------------------~~ 278 (293)
T d1p22a2 223 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EF 278 (293)
T ss_dssp EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SS
T ss_pred eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc------------------------CC
Confidence 5778899999999999999999753 24566777888888777664 56
Q ss_pred ccceecccCcccccc
Q 001403 692 PEISVEAENKSEVEK 706 (1084)
Q Consensus 692 ~l~~~~~d~~i~~w~ 706 (1084)
++++++.|++|++||
T Consensus 279 ~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 279 QIVSSSHDDTILIWD 293 (293)
T ss_dssp CEEECCSSSEEEEEC
T ss_pred EEEEEecCCEEEEeC
Confidence 799999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.4e-25 Score=252.36 Aligned_cols=288 Identities=13% Similarity=0.084 Sum_probs=212.5
Q ss_pred eeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccce---eeeecCCCCCeEEEEE------c
Q 001403 327 AQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFK---TALVRDPGVSVNRVVW------S 397 (1084)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~---~~~~~~h~~~V~~v~f------s 397 (1084)
....++|.++|.++++++ ++|++++.| ++|+|||..+...... ......|...+..+.. +
T Consensus 7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D---------~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (393)
T d1sq9a_ 7 ANAGKAHDADIFSVSACN--SFTVSCSGD---------GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERD 75 (393)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETT---------SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETT
T ss_pred eecCCcccCccEEEEEeC--CEEEEEECC---------CeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccC
Confidence 456689999999999875 689999888 9999999865432111 1112235544433332 2
Q ss_pred C-CCCEEEEEeCCCEEEEEEccCCccccceee-------eecccccEeEEEeecCCC---cEEEEEEeCCCcEEEEECCC
Q 001403 398 P-DGSLLGVAYSKHIVQLYAYHGGSDARQQLE-------IDAHVGNVNDLAFSAPCK---QISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 398 p-dg~~las~~~dg~v~iwd~~~~~~~~~~~~-------l~~h~~~V~~l~~s~d~~---~l~l~s~~~d~~i~vwd~~~ 466 (1084)
+ ++.++++++.||.|++|++........... ...+...+..++|.+++. ..++++++.|+++++|++..
T Consensus 76 ~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~ 155 (393)
T d1sq9a_ 76 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 155 (393)
T ss_dssp TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred CCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeec
Confidence 1 345788999999999999876554332111 123455678888887642 12788999999999999753
Q ss_pred Cc------------------eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee------cCCCC
Q 001403 467 GS------------------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY------DAPGL 522 (1084)
Q Consensus 467 g~------------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~------~~~~~ 522 (1084)
.. .......+...+.+++|++ ++ +|++|+.||+|++||+.+.+....+ ..|..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~ 232 (393)
T d1sq9a_ 156 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 232 (393)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred CCcccceeeeeeccceecccceecccCCCCcEEEEEECC--CC-EEEEEeCCCcEEEEeecccccccccccccccccccc
Confidence 21 0111234556688888854 54 8999999999999999987765543 45677
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeee-------------ccccccCceEEEEEcCCCCEEEEEE
Q 001403 523 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-------------GLQLQHNSVSVVHFDTAKDQILAAG 589 (1084)
Q Consensus 523 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-------------~~~~~~~~v~~~~~s~~~~~l~~~~ 589 (1084)
.|.+++|+|||++|++++.++. .+.|++||+.+++.+..+. +|. ..|.+++|+|++++|++++
T Consensus 233 ~V~~l~~spdg~~l~sgs~D~t-~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~---~~V~~l~fspd~~~l~S~s 308 (393)
T d1sq9a_ 233 SIRSVKFSPQGSLLAIAHDSNS-FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---SWVMSLSFNDSGETLCSAG 308 (393)
T ss_dssp CEEEEEECSSTTEEEEEEEETT-EEEEEEEETTTCCEEEEECBC--------CCBSBS---SCEEEEEECSSSSEEEEEE
T ss_pred eEEEcccccccceeeeecCCCC-cceeeecccccceeeeeeccccccccceeeeeccc---CceeeeccCCCCCeeEEEC
Confidence 9999999999999999986432 3579999999998887775 455 8899999999999999999
Q ss_pred CCCcEEEEECCCCeEEEEEcCCCCCC--CcceEEEecCCCEEEEE
Q 001403 590 DDHVIKIWDMNKVQLLTTIDAGGGLP--ENPRICFNKNGTLLAVI 632 (1084)
Q Consensus 590 ~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~v~~s~~~~~l~~~ 632 (1084)
.|++|++||+.+++++.++.+|.... ....++|+|++..++++
T Consensus 309 ~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 309 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred CCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence 99999999999999999998775421 12358899999887644
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.1e-25 Score=236.90 Aligned_cols=274 Identities=21% Similarity=0.309 Sum_probs=219.4
Q ss_pred eeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE
Q 001403 327 AQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 406 (1084)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~ 406 (1084)
++...+|...|+|++ +||++||+|+.| ++|+|||+.+.+... .+.+|...|.+++| ++++|++|
T Consensus 8 i~~~~~~~~~V~c~~--~d~~~l~sgs~D---------g~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~~l~s~ 71 (293)
T d1p22a2 8 IHCRSETSKGVYCLQ--YDDQKIVSGLRD---------NTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DERVIITG 71 (293)
T ss_dssp EECCCSSCCCEEEEE--CCSSEEEEEESS---------SCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSSEEEEE
T ss_pred EeccCCCCCCEEEEE--EcCCEEEEEeCC---------CeEEEEECCCCcEEE---EEecCCCCEeeeec--ccceeecc
Confidence 345568888999865 589999999998 999999998876543 37899999999887 67899999
Q ss_pred eCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce---eeEeccCCCcEEEE
Q 001403 407 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVYSL 483 (1084)
Q Consensus 407 ~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~---~~~~~~h~~~v~~~ 483 (1084)
+.|+.|++|++..+.... ....+.. ....+.+... .++++..++.+.+||..+... ...+..|...+..+
T Consensus 72 s~D~~i~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 144 (293)
T d1p22a2 72 SSDSTVRVWDVNTGEMLN---TLIHHCE--AVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 144 (293)
T ss_dssp ETTSCEEEEESSSCCEEE---EECCCCS--CEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEE
T ss_pred cccccccccccccccccc---ccccccc--cccccccccc--ceeecccccceeEeeccccccccccccccccccccccc
Confidence 999999999999886543 2222222 2334455555 688999999999999887653 45567788889888
Q ss_pred eecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeee
Q 001403 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 563 (1084)
Q Consensus 484 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 563 (1084)
.+.. ..+++++.|+.|++||+.+.+....+..+...+..+.++ +..+++++. ++.|++||+.+++.+..+
T Consensus 145 ~~~~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~~~~~~~~~ 214 (293)
T d1p22a2 145 DFDD----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIECGACLRVL 214 (293)
T ss_dssp EEET----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETTTCCEEEEE
T ss_pred eecc----cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecC----CCEEEEEecccceeeeee
Confidence 7632 578999999999999999999888888888888777765 568888875 667999999999999988
Q ss_pred eccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC---------CeEEEEEcCCCCCCCcceEEEecCCCEEEEEEC
Q 001403 564 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---------VQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 634 (1084)
Q Consensus 564 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 634 (1084)
.++. ..+.. +++++.+|++++.||.|++||+.+ ...+..+..|.. .|.+++|+ +++|++++.
T Consensus 215 ~~~~---~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~--~V~~v~~d--~~~l~s~s~ 285 (293)
T d1p22a2 215 EGHE---ELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQFD--EFQIVSSSH 285 (293)
T ss_dssp CCCS---SCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEEC--SSCEEECCS
T ss_pred cccc---eeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCC--CEEEEEEc--CCEEEEEec
Confidence 8877 56654 567788999999999999999643 346677776644 58899884 678999999
Q ss_pred CCeEEEEE
Q 001403 635 ENRIKILE 642 (1084)
Q Consensus 635 dg~i~iwd 642 (1084)
||+|++||
T Consensus 286 Dg~i~iWD 293 (293)
T d1p22a2 286 DDTILIWD 293 (293)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEeC
Confidence 99999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=2.7e-26 Score=252.21 Aligned_cols=264 Identities=11% Similarity=-0.011 Sum_probs=195.4
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
+.++|++.|++|+|||+|++||+|+.||+|+|||+.++..........+|.++|.+++|+|++.. ++++|+.|++|++|
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeee
Confidence 46789999999999999999999999999999999887655444455579999999999998654 79999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee----cC--CCCeEEEEEEcCCCCEE
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY----DA--PGLGCTRMAYSANGRRL 536 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~~--~~~~i~~~~~s~d~~~l 536 (1084)
++..+........+........+. ..+...+++++.++.+++||++........ .. .......+.+.+++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRIC-KYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL 163 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEE-EETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred eccccccccccccccccccccccc-ccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence 999888777776555544333332 224568999999999999998654432211 11 12244566778889999
Q ss_pred EEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEE-cCCCCEEEEEECCCcEEEEECCCCeEE---------E
Q 001403 537 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWDMNKVQLL---------T 606 (1084)
Q Consensus 537 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~---------~ 606 (1084)
++++. ++.|++||+.+.+..............+.+..+ ..++..+++++.||.+.+|+....... .
T Consensus 164 ~~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~ 239 (342)
T d1yfqa_ 164 IVGMN----NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp EEEES----TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred eeecC----CCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceee
Confidence 99876 667999999876654433322222244555554 456788999999999999987643211 1
Q ss_pred EEc----CCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeec
Q 001403 607 TID----AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 652 (1084)
Q Consensus 607 ~~~----~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 652 (1084)
... ...+...+.+++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus 240 ~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~ 289 (342)
T d1yfqa_ 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred eeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEe
Confidence 111 1123335789999999999999999999999999988766544
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=6.3e-26 Score=256.86 Aligned_cols=352 Identities=9% Similarity=0.039 Sum_probs=259.4
Q ss_pred CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeE--EEEEcCC-CCCCCcceEEE
Q 001403 546 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAG-GGLPENPRICF 622 (1084)
Q Consensus 546 ~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~-~~~~~v~~v~~ 622 (1084)
++.|.+||..+++++..+..+. .+..++|+|||+++++++.||++++||+.+++. ...+... .+...+.+.+|
T Consensus 41 ~g~v~v~D~~t~~v~~~~~~g~----~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~ 116 (432)
T d1qksa2 41 AGQIALIDGSTYEIKTVLDTGY----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKME 116 (432)
T ss_dssp TTEEEEEETTTCCEEEEEECSS----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCST
T ss_pred CCEEEEEECCCCcEEEEEeCCC----CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEeccc
Confidence 6779999999999999998765 589999999999999999999999999988764 3333321 11112344566
Q ss_pred ecCCCEE-EEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCc
Q 001403 623 NKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 701 (1084)
Q Consensus 623 s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~ 701 (1084)
+|||++| ++++.++.+++||..+++.+..+..+...+....+.
T Consensus 117 SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~------------------------------------ 160 (432)
T d1qksa2 117 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH------------------------------------ 160 (432)
T ss_dssp TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE------------------------------------
T ss_pred CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceecc------------------------------------
Confidence 7899986 677789999999999998887766544332211111
Q ss_pred cccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEe-ecCCceEEeeccCCccCcCcccceecCCeeecCCCC
Q 001403 702 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 780 (1084)
Q Consensus 702 i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1084)
+......+.++++|..++++ ..++.+.+|+....+. .+++.+.
T Consensus 161 -----------------------~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~-----------~~~~~i~-- 204 (432)
T d1qksa2 161 -----------------------PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-----------LKTTEIS-- 204 (432)
T ss_dssp -----------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-----------EEEEEEE--
T ss_pred -----------------------CCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCc-----------ceEEEEc--
Confidence 33456678899999887554 4568888887654221 1222211
Q ss_pred CccccccCcCCCCCCCccEEEecCCCCEEEEEe--CCeEEEEEcCCceeEEEEcC-----CCCCeEEEEEcCCCCcEEEE
Q 001403 781 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAI 853 (1084)
Q Consensus 781 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~la~ 853 (1084)
+...+.+++|+|||+++++++ ++.+.++|..+++....+.. +........+.. .+...++
T Consensus 205 ------------~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~g~~~~~ 271 (432)
T d1qksa2 205 ------------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT-FGPVWAT 271 (432)
T ss_dssp ------------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT-TEEEEEE
T ss_pred ------------ccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC-CCceecc
Confidence 345678899999999998887 57899999999988877643 333445555555 5655555
Q ss_pred Ee-CCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCce
Q 001403 854 GM-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 932 (1084)
Q Consensus 854 g~-~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 932 (1084)
.. .++.|.+|+..... +..|...|....++|++..+++++.+.+.++|+..+.. .+.. ...
T Consensus 272 ~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~-----------~~~~---~~~ 333 (432)
T d1qksa2 272 SHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN-----------PEAE---ISG 333 (432)
T ss_dssp EBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC-----------SSHH---HHT
T ss_pred cccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC-----------CCCC---eee
Confidence 54 47899999876543 35677889999999999999999999999999876522 1111 133
Q ss_pred EEEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEe-----CCCcEEEEEcCCCceeE
Q 001403 933 HIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNLEVQC 1006 (1084)
Q Consensus 933 ~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~-----~dg~i~vwd~~~~~~~~ 1006 (1084)
++++ ||++.+++ +.|+.+++|++.++..+ ..|...|.+++|||||++|+.+. .+|.|.|||..++++..
T Consensus 334 sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l----~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~ 408 (432)
T d1qksa2 334 SVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI----TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKH 408 (432)
T ss_dssp CEEE-EEGGGCCCSSSCCCEEEECHHHHHTC----CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred EEEE-EechhhcccccCCceEeccccccccc----CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEe
Confidence 4555 99999999 57889999998766433 24677899999999999886654 46889999999999987
Q ss_pred Eec
Q 001403 1007 RIL 1009 (1084)
Q Consensus 1007 ~~~ 1009 (1084)
.+.
T Consensus 409 ~i~ 411 (432)
T d1qksa2 409 VIK 411 (432)
T ss_dssp EEC
T ss_pred Eec
Confidence 776
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=8e-26 Score=251.16 Aligned_cols=195 Identities=13% Similarity=0.042 Sum_probs=162.3
Q ss_pred EEEcC-CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC--CcEEEEECCCCcee
Q 001403 394 VVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRT 470 (1084)
Q Consensus 394 v~fsp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d--~~i~vwd~~~g~~~ 470 (1084)
-.||| ||+++|+++. |.|.+||++++...+ + +|...|.+++|+|||+ .|++++.+ ..|++||+++++.
T Consensus 8 ~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~----~-~~~~~v~~~~~spDg~--~l~~~~~~~g~~v~v~d~~~~~~- 78 (360)
T d1k32a3 8 EDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLK----V-PEPLRIRYVRRGGDTK--VAFIHGTREGDFLGIYDYRTGKA- 78 (360)
T ss_dssp EEEEECGGGCEEEEET-TEEEEECTTSSBEEE----C-SCCSCEEEEEECSSSE--EEEEEEETTEEEEEEEETTTCCE-
T ss_pred ccccCCCCCEEEEEEC-CeEEEEECCCCcEEE----c-cCCCCEEEEEECCCCC--EEEEEEcCCCCEEEEEECCCCcE-
Confidence 56999 9999999875 689999999876443 2 6999999999999999 56655544 3799999988765
Q ss_pred eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeC------CC
Q 001403 471 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS------KE 544 (1084)
Q Consensus 471 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~------~~ 544 (1084)
..+..|...|.+++|+ +++++|++++.++.+++|++........+..+...+.+++|+|||++|+.+... +.
T Consensus 79 ~~~~~~~~~v~~~~~s--pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~ 156 (360)
T d1k32a3 79 EKFEENLGNVFAMGVD--RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY 156 (360)
T ss_dssp EECCCCCCSEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred EEeeCCCceEEeeeec--ccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeec
Confidence 4677899999999995 477899999999999999999999888888888899999999999999876532 23
Q ss_pred CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 001403 545 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 603 (1084)
Q Consensus 545 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 603 (1084)
.++.+++||..+++....... . ..+..++|+|+|++|++++.++.+.+|+.....
T Consensus 157 ~~~~~~v~d~~~~~~~~~~~~-~---~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~ 211 (360)
T d1k32a3 157 VMQAIHVYDMEGRKIFAATTE-N---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN 211 (360)
T ss_dssp CEEEEEEEETTTTEEEECSCS-S---SBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred cccceeeeccccCceeeeccc-c---cccccccccCCCCEEEEEeCCCceEcccccccc
Confidence 456799999998877655443 3 578889999999999999999999999976543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=9.5e-27 Score=258.74 Aligned_cols=316 Identities=13% Similarity=0.063 Sum_probs=217.9
Q ss_pred eEEEEcC-CCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC--EEEE
Q 001403 338 MSMDFHP-VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH--IVQL 414 (1084)
Q Consensus 338 ~~v~~sp-dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg--~v~i 414 (1084)
.+-.||| ||+++|+++ .+.|.|||+.++.... .+|...|.+++|||||++|++++.+. .|++
T Consensus 6 ~~~~fSP~dG~~~a~~~----------~g~v~v~d~~~~~~~~-----~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v 70 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVS----------RGQAFIQDVSGTYVLK-----VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGI 70 (360)
T ss_dssp GEEEEEECGGGCEEEEE----------TTEEEEECTTSSBEEE-----CSCCSCEEEEEECSSSEEEEEEEETTEEEEEE
T ss_pred hcccccCCCCCEEEEEE----------CCeEEEEECCCCcEEE-----ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEE
Confidence 4567999 999999963 2889999998765432 25899999999999999999876553 7999
Q ss_pred EEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEE
Q 001403 415 YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI 494 (1084)
Q Consensus 415 wd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l 494 (1084)
||+.+++.. .+..|...|.+++|+|||+ +|++++.++.+++|++.+++....+..|...+.+++|++ +|++|
T Consensus 71 ~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l 142 (360)
T d1k32a3 71 YDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD--NSRFI 142 (360)
T ss_dssp EETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT--TSCEE
T ss_pred EECCCCcEE----EeeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhhcc--ceeee
Confidence 999987643 4678999999999999999 899999999999999999999999999999999999954 67888
Q ss_pred EEEe----------cCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe----
Q 001403 495 FSIS----------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK---- 560 (1084)
Q Consensus 495 ~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~---- 560 (1084)
+.++ .++.+++|++.+.+. .....+...+..++|+|||++|++++. ++.+.+||.......
T Consensus 143 a~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~s~----~~~~~~~d~~~~~~~~~~~ 217 (360)
T d1k32a3 143 AYGFPLKHGETDGYVMQAIHVYDMEGRKI-FAATTENSHDYAPAFDADSKNLYYLSY----RSLDPSPDRVVLNFSFEVV 217 (360)
T ss_dssp EEEEEECSSTTCSCCEEEEEEEETTTTEE-EECSCSSSBEEEEEECTTSCEEEEEES----CCCCCEECSSSSCEECCSC
T ss_pred eeeccccccceeeccccceeeeccccCce-eeecccccccccccccCCCCEEEEEeC----CCceEcccccccceeeccc
Confidence 7654 345689999987544 344456667889999999999999875 555888987654332
Q ss_pred ---eeeeccccccCceEEEEEcCCCCEEEEEECCCc-----EEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEE
Q 001403 561 ---RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-----IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 632 (1084)
Q Consensus 561 ---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 632 (1084)
..+..+. ..+..+.|++++..++++..+.. +..++...+.... +...
T Consensus 218 ~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~--------- 272 (360)
T d1k32a3 218 SKPFVIPLIP---GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRM-------------IIPL--------- 272 (360)
T ss_dssp BEEEEEESST---TCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEE-------------EEEC---------
T ss_pred cceEEEeccc---CccccceECCCcCcccccceeecccccceeecccCcCceeE-------------eeec---------
Confidence 1122222 33344455666555544332211 2222222222111 1111
Q ss_pred ECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecC
Q 001403 633 ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP 712 (1084)
Q Consensus 633 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~ 712 (1084)
++.+..+.... ..+.+.++++++.++.+++|++...+.
T Consensus 273 --~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~i~~~d~~~~~~ 310 (360)
T d1k32a3 273 --ESSILIYSVPV----------------------------------------HGEFAAYYQGAPEKGVLLKYDVKTRKV 310 (360)
T ss_dssp --SSEEEEEECCC----------------------------------------CCSHHHHHHCCCCCEEEEEEETTTCCE
T ss_pred --CCCceEEEEEe----------------------------------------cCCCeeEEEecCCCCEEEEEECCCCeE
Confidence 11111111000 012334455556666666666543211
Q ss_pred ccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCC
Q 001403 713 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 758 (1084)
Q Consensus 713 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~ 758 (1084)
..+.+.|.+++|+|||++|++++.||.|++|++..+
T Consensus 311 ----------~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~ 346 (360)
T d1k32a3 311 ----------TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346 (360)
T ss_dssp ----------EEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred ----------EEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence 114457889999999999999999999999987654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=1.9e-24 Score=245.67 Aligned_cols=364 Identities=8% Similarity=-0.017 Sum_probs=239.8
Q ss_pred EEEcCCCc--eeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEc
Q 001403 340 MDFHPVQH--TLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAY 417 (1084)
Q Consensus 340 v~~spdg~--~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~ 417 (1084)
+.+++|.+ ++++...| ++|+|||+.+.+.... +..| ..+..++|||||++|++++.|++|++||+
T Consensus 24 ~~~~~d~~~~~~V~~~~d---------g~v~vwD~~t~~~~~~---l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~ 90 (426)
T d1hzua2 24 QLNDLDLPNLFSVTLRDA---------GQIALVDGDSKKIVKV---IDTG-YAVHISRMSASGRYLLVIGRDARIDMIDL 90 (426)
T ss_dssp CCSCCCGGGEEEEEETTT---------TEEEEEETTTCSEEEE---EECC-SSEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred ccccCCCCeEEEEEEcCC---------CEEEEEECCCCcEEEE---EeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEc
Confidence 34666654 33445444 9999999998766544 4445 46999999999999999999999999999
Q ss_pred cCCcccc--ceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEE
Q 001403 418 HGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF 495 (1084)
Q Consensus 418 ~~~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 495 (1084)
.+++... .+....+|.+.+.+++|+|||++ +++++..++++++||..++.++..+.+|...+..+.+.+.+. ...+
T Consensus 91 ~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i 168 (426)
T d1hzua2 91 WAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR-VAAI 168 (426)
T ss_dssp TSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC-EEEE
T ss_pred cCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCc-eeEE
Confidence 9987532 22233467788889999999995 346666899999999999999999888877776666644322 1233
Q ss_pred EEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEee-eeeccccccCceE
Q 001403 496 SISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVS 574 (1084)
Q Consensus 496 s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~~~v~ 574 (1084)
.+ ++++..++.... +.+.+.+++...+.... ....+. ..+.
T Consensus 169 ~~--------------------------------s~d~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~---~~~~ 210 (426)
T d1hzua2 169 IA--------------------------------SHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTSIGAA---PFLA 210 (426)
T ss_dssp EE--------------------------------CSSSSEEEEEET---TTTEEEEEECSSSSSCEEEEEECC---SSEE
T ss_pred EE--------------------------------CCCCCEEEEecC---CCCeEEEEEeccccceeeEEeccC---CccE
Confidence 33 344444443322 13334445444433221 122233 5788
Q ss_pred EEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCE-EEE--EECCCeEEEEEcCCCCeee
Q 001403 575 VVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL-LAV--IANENRIKILETPESNSVD 650 (1084)
Q Consensus 575 ~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~~--~~~dg~i~iwd~~~~~~~~ 650 (1084)
.+.|+|++++++++. .+..+.+++..+++.+................+...+.. +.. .+.++.+.+|+....
T Consensus 211 ~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~---- 286 (426)
T d1hzua2 211 DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK---- 286 (426)
T ss_dssp EEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTT----
T ss_pred eeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccc----
Confidence 999999999988876 566789999999999888875544333334444433221 111 112334444332211
Q ss_pred eccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEE
Q 001403 651 AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKIS 730 (1084)
Q Consensus 651 ~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~ 730 (1084)
.+.+|+
T Consensus 287 --------------------------------------------------~~~~~~------------------------ 292 (426)
T d1hzua2 287 --------------------------------------------------NHPQYA------------------------ 292 (426)
T ss_dssp --------------------------------------------------TCTTTB------------------------
T ss_pred --------------------------------------------------cccccc------------------------
Confidence 000000
Q ss_pred EEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEE
Q 001403 731 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 810 (1084)
Q Consensus 731 ~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 810 (1084)
+..... +. +|...+..++|+|||++|+
T Consensus 293 -------------------------------------------------~~~~~~--l~--g~~~~v~~v~~sPdg~~l~ 319 (426)
T d1hzua2 293 -------------------------------------------------WKKVAE--LQ--GQGGGSLFIKTHPKSSHLY 319 (426)
T ss_dssp -------------------------------------------------TSEEEE--EE--CSSSCCCCEECCTTCSEEE
T ss_pred -------------------------------------------------ceEeEE--Ee--cCCCceeEEEcCCCCceEE
Confidence 000100 11 2677788889999999988
Q ss_pred EE-------e-CCeEEEEEcCCceeEEEE---------cCCCCCeEEEEEcCCCCcEEE-EE----eCCCeEEEEEcCCc
Q 001403 811 SA-------S-GGVISLYIVMTFKTILTI---------MPPSPTATSLAFNPHDNNVIA-IG----MDDSTILIYNARSS 868 (1084)
Q Consensus 811 ~~-------s-dg~i~vwd~~~~~~~~~~---------~~~~~~i~~l~~s~~d~~~la-~g----~~dg~i~iwd~~~~ 868 (1084)
+. + +++|+|||+.+++...++ ..+...+.+++||| ||++++ ++ +.+|.|+|||..++
T Consensus 320 v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~~~i~v~D~~T~ 398 (426)
T d1hzua2 320 VDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDKTL 398 (426)
T ss_dssp ECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSCCEEEEEETTTT
T ss_pred EeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCCCeEEEEECCCC
Confidence 53 2 578999999998876554 24556799999999 787664 33 36789999999999
Q ss_pred eeeeeecccccCEEEEEEcCCCCEEE
Q 001403 869 EVISKLEGHSKRVTGLVFSDALNILV 894 (1084)
Q Consensus 869 ~~~~~l~~h~~~V~~l~~spd~~~l~ 894 (1084)
+....+.++. .++|+|++-+
T Consensus 399 k~~~~i~~~~------~~tp~Gk~~~ 418 (426)
T d1hzua2 399 KLKAVVKDPR------LITPTGKFNV 418 (426)
T ss_dssp EEEEEECCTT------CCSEEEEEEH
T ss_pred eEEEEECCCC------ccCCCceEeE
Confidence 9998888775 4467777643
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=4.8e-25 Score=250.56 Aligned_cols=346 Identities=8% Similarity=0.047 Sum_probs=236.9
Q ss_pred CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEc--CC-CCCCCcceEEE
Q 001403 546 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID--AG-GGLPENPRICF 622 (1084)
Q Consensus 546 ~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~-~~~~~v~~v~~ 622 (1084)
++.|.+||+.+++.+..+..+. .+..++|+|||+++++++.|++|++||+.+++...... .. ++...+.+++|
T Consensus 41 dg~v~vwD~~t~~~~~~l~~g~----~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~ 116 (426)
T d1hzua2 41 AGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFK 116 (426)
T ss_dssp TTEEEEEETTTCSEEEEEECCS----SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCST
T ss_pred CCEEEEEECCCCcEEEEEeCCC----CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeee
Confidence 7789999999999999998765 58999999999999999999999999999887554332 21 11122345667
Q ss_pred ecCCCEEEEE-ECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCc
Q 001403 623 NKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 701 (1084)
Q Consensus 623 s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~ 701 (1084)
+|||++++++ ..++.+++||..++........+...+....+.
T Consensus 117 spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 160 (426)
T d1hzua2 117 GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH------------------------------------ 160 (426)
T ss_dssp TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE------------------------------------
T ss_pred cCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeec------------------------------------
Confidence 7899987555 478999999999998887776555444322222
Q ss_pred cccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecC-CceEEeeccCCccCcCcccceecCCeeecCCCC
Q 001403 702 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 780 (1084)
Q Consensus 702 i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1084)
+......+.+++++..++....+ +.+.+++....
T Consensus 161 -----------------------~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~---------------------- 195 (426)
T d1hzua2 161 -----------------------PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI---------------------- 195 (426)
T ss_dssp -----------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSS----------------------
T ss_pred -----------------------CCCceeEEEECCCCCEEEEecCCCCeEEEEEeccc----------------------
Confidence 22334556677777766655443 44444432221
Q ss_pred CccccccCcCCCCCCCccEEEecCCCCEEEEEe--CCeEEEEEcCCceeEEEEcCCC--CCeEEEEEcCCCCcEE--EEE
Q 001403 781 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVI--AIG 854 (1084)
Q Consensus 781 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~l--a~g 854 (1084)
..+..... .+...+..++++|++++++++. ++.+.+++..+++......... .......+.......+ +..
T Consensus 196 ~~~~~~~~---~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (426)
T d1hzua2 196 DNLTVTSI---GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH 272 (426)
T ss_dssp SSCEEEEE---ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC
T ss_pred cceeeEEe---ccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEecc
Confidence 10111001 2566788999999999999887 5789999999999887765322 2222333333122222 233
Q ss_pred eCCCeEEEEEcCC-------ceeeeeecccccCEEEEEEcCCCCEEEE-------EeCCCcEEEEeCCCCceeeee-eee
Q 001403 855 MDDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVS-------SGGDAQIFVWDVDGWGIQTCR-SLQ 919 (1084)
Q Consensus 855 ~~dg~i~iwd~~~-------~~~~~~l~~h~~~V~~l~~spd~~~l~s-------~s~dg~I~iwd~~~~~~~~~~-~~~ 919 (1084)
+.|+.+.+|+... ++....+.+|...+..++|+||+++|++ ++.|++|+|||+.+++..... .+.
T Consensus 273 ~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~ 352 (426)
T d1hzua2 273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA 352 (426)
T ss_dssp TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH
T ss_pred CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccc
Confidence 4577888887654 4678889999999999999999999994 556889999999987643321 111
Q ss_pred cCCCCccCCCCceEEEEccCCCEEEEE------eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEE
Q 001403 920 TPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 986 (1084)
Q Consensus 920 ~~~~~~~~~~~v~~~~~s~dg~~la~~------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 986 (1084)
...++......+.+++|||||++++++ .++.|+|||..+++....+. ++. .++|+|+|-+
T Consensus 353 ~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~-~~~------~~tp~Gk~~~ 418 (426)
T d1hzua2 353 EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK-DPR------LITPTGKFNV 418 (426)
T ss_dssp HHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC-CTT------CCSEEEEEEH
T ss_pred hhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC-CCC------ccCCCceEeE
Confidence 111122222479999999999987542 46789999999999877643 332 4567777743
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.89 E-value=3.5e-20 Score=199.17 Aligned_cols=268 Identities=14% Similarity=0.167 Sum_probs=204.0
Q ss_pred EEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEE-EEECCCeEEEEEcCCCCeeeeccccccceeEEEE
Q 001403 586 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAGVLSDNLRKLSV 664 (1084)
Q Consensus 586 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 664 (1084)
++++.|++|.+||+.+++.++.+..... ...++|+|||++|+ +++.++.|++||+.+++.+..+..
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g~~---p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~---------- 72 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVGSN---PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA---------- 72 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSSS---EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC----------
T ss_pred EEECCCCEEEEEECCCCeEEEEEECCCC---ceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec----------
Confidence 4567899999999999999999986543 67899999999875 556789999999887644332210
Q ss_pred cCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEe
Q 001403 665 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL 744 (1084)
Q Consensus 665 ~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 744 (1084)
T Consensus 73 -------------------------------------------------------------------------------- 72 (301)
T d1l0qa2 73 -------------------------------------------------------------------------------- 72 (301)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--CCeEEEEEc
Q 001403 745 ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIV 822 (1084)
Q Consensus 745 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~ 822 (1084)
...+..+++++++.+++++. ++.+.+|+.
T Consensus 73 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (301)
T d1l0qa2 73 -------------------------------------------------GSSPQGVAVSPDGKQVYVTNMASSTLSVIDT 103 (301)
T ss_dssp -------------------------------------------------SSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred -------------------------------------------------cccccccccccccccccccccccceeeeccc
Confidence 11234566677777665554 477899999
Q ss_pred CCceeEEEEcCCCCCeEEEEEcCCCCcEE-EEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCC-C
Q 001403 823 MTFKTILTIMPPSPTATSLAFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-A 900 (1084)
Q Consensus 823 ~~~~~~~~~~~~~~~i~~l~~s~~d~~~l-a~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~d-g 900 (1084)
.+++....+..+ ....+++|+| ++..+ +++..++.+.+|+..+++.+..+..+ ..+..++++|+++.+++++.+ +
T Consensus 104 ~~~~~~~~~~~~-~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 180 (301)
T d1l0qa2 104 TSNTVAGTVKTG-KSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSM 180 (301)
T ss_dssp TTTEEEEEEECS-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTT
T ss_pred ccceeeeecccc-ccceEEEeec-CCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeeccccc
Confidence 998888887744 5678899999 56554 56667889999999999988887754 458899999999998888765 5
Q ss_pred cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-e---CCeEEEEEcCCcceeeEeecCCCCCEEEE
Q 001403 901 QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H---ETHLAIYEAEELTCLKQWFPISSVPISQA 976 (1084)
Q Consensus 901 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~---d~~i~vwd~~~~~~~~~~~~~h~~~v~~l 976 (1084)
.+.+|+....+... .... .. .+..++|++++..++++ . ++.|++||+.+++.+..+.. ...+.++
T Consensus 181 ~~~~~~~~~~~~~~--~~~~---~~----~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~--~~~~~~v 249 (301)
T d1l0qa2 181 SISVIDTVTNSVID--TVKV---EA----APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--GPDPAGI 249 (301)
T ss_dssp EEEEEETTTTEEEE--EEEC---SS----EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC--CSSEEEE
T ss_pred ccccccccceeeee--cccc---cC----CcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC--CCCEEEE
Confidence 67778777644222 1111 11 36789999999998773 2 35799999999998876543 4568999
Q ss_pred EEccCCCEE-EEEeCCCcEEEEEcCCCceeEEec
Q 001403 977 TFSCDCRMV-FTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 977 ~fs~dg~~l-~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
+|||||++| ++++.|+.|++||+.+++++.++.
T Consensus 250 a~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 250 AVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 999999987 567789999999999999988775
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=1.5e-21 Score=213.97 Aligned_cols=315 Identities=10% Similarity=0.047 Sum_probs=221.0
Q ss_pred CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEE-EEECCCeEEEEEcCCCCeeeeccccccceeE
Q 001403 583 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAGVLSDNLRK 661 (1084)
Q Consensus 583 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 661 (1084)
+++++++.|++|+|||+.+++.+..+..+.....+..++|+|||++++ +++.++.|.+||+.+++.+..+..+....
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~-- 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE-- 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE--
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc--
Confidence 478999999999999999999999998765555678999999999875 55678999999999988776554322111
Q ss_pred EEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeE
Q 001403 662 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 741 (1084)
Q Consensus 662 ~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 741 (1084)
+...+..++|+|+++.+
T Consensus 80 ---------------------------------------------------------------~~~~~~~v~~s~dg~~l 96 (337)
T d1pbyb_ 80 ---------------------------------------------------------------RVKSLFGAALSPDGKTL 96 (337)
T ss_dssp ---------------------------------------------------------------EEECTTCEEECTTSSEE
T ss_pred ---------------------------------------------------------------cccceeeEEEcCCCcEE
Confidence 11223357888888888
Q ss_pred EEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEE
Q 001403 742 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYI 821 (1084)
Q Consensus 742 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd 821 (1084)
+++..+.....|..... ...+.+||..++....... ....+..++|+|||+++++++ +.+.+||
T Consensus 97 ~~~~~~~~~~~~~~~~~----------~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~-~~~~~~d 160 (337)
T d1pbyb_ 97 AIYESPVRLELTHFEVQ----------PTRVALYDAETLSRRKAFE-----APRQITMLAWARDGSKLYGLG-RDLHVMD 160 (337)
T ss_dssp EEEEEEEEECSSCEEEC----------CCEEEEEETTTTEEEEEEE-----CCSSCCCEEECTTSSCEEEES-SSEEEEE
T ss_pred EEeecCCcceeeecccc----------ccceeeccccCCeEEEecc-----ccCCceEEEEcCCCCEEEEEc-CCcceee
Confidence 88777655555443221 1234567777766544433 345678899999999998876 4578899
Q ss_pred cCCceeEEEEcCCCCCeEEEEEcCCCCcEEE-EEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCC
Q 001403 822 VMTFKTILTIMPPSPTATSLAFNPHDNNVIA-IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA 900 (1084)
Q Consensus 822 ~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la-~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg 900 (1084)
..+++....+..+.. .....++| ++..+. .+...+....++ .....+......++.++
T Consensus 161 ~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 219 (337)
T d1pbyb_ 161 PEAGTLVEDKPIQSW-EAETYAQP-DVLAVWNQHESSGVMATPF-------------------YTARKDIDPADPTAYRT 219 (337)
T ss_dssp TTTTEEEEEECSTTT-TTTTBCCC-BCCCCCCCCTTTTEEEEEE-------------------EEEBTTSCTTSGGGEEE
T ss_pred eecCcEEEEeecCCc-cccceecC-Ccceeeccccccceeeeee-------------------eeeeeccceeeecccCc
Confidence 999998888765432 22334455 332222 222222222221 12222333334445566
Q ss_pred cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEcc
Q 001403 901 QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSC 980 (1084)
Q Consensus 901 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~ 980 (1084)
.+.+|+..++......... +. ..+..++++|++.++++. ++.|++||+.+++.+.... +...+.+++|||
T Consensus 220 ~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~ 289 (337)
T d1pbyb_ 220 GLLTMDLETGEMAMREVRI----MD---VFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP--LPHSYYSVNVST 289 (337)
T ss_dssp EEEEEETTTCCEEEEEEEE----CS---SCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE--CSSCCCEEEECT
T ss_pred cEEEEEcCCCcEEEEEecC----CC---cceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc--CCCCEEEEEECC
Confidence 7999999987644322221 11 257789999999988765 6899999999999988765 456789999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 981 DCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 981 dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
||++|++++.||.|+|||+.+++.+.++.
T Consensus 290 dG~~l~v~~~~~~i~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 290 DGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp TSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence 99999999999999999999999998886
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.88 E-value=1e-21 Score=216.10 Aligned_cols=327 Identities=9% Similarity=-0.013 Sum_probs=221.6
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEE-ECCCeEEEEEcCCCCeeeeccc
Q 001403 576 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGV 654 (1084)
Q Consensus 576 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~ 654 (1084)
++|+++++++++++.+++|.+||+.+++.+.++..+... .+..++|+|||++++++ ..++.|.+||+.+++.+..+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~-~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKF-GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCC-SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCC-CcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence 468999999999999999999999999999988754332 36799999999987554 5689999999998876654432
Q ss_pred cccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEE
Q 001403 655 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 734 (1084)
Q Consensus 655 ~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 734 (1084)
..... .+...+..++|
T Consensus 81 ~~~~~----------------------------------------------------------------~~~~~~~~v~~ 96 (346)
T d1jmxb_ 81 SSVPG----------------------------------------------------------------EVGRSMYSFAI 96 (346)
T ss_dssp CCSTT----------------------------------------------------------------EEEECSSCEEE
T ss_pred ccccc----------------------------------------------------------------ccCCceEEEEE
Confidence 11100 01112335677
Q ss_pred ecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeC
Q 001403 735 NNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG 814 (1084)
Q Consensus 735 s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sd 814 (1084)
+|||++++++..+.....|..... ...+.+|+..++......... .....+..+.++++++.++. +
T Consensus 97 s~DG~~l~v~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~ 162 (346)
T d1jmxb_ 97 SPDGKEVYATVNPTQRLNDHYVVK----------PPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRAADDGSLYVA--G 162 (346)
T ss_dssp CTTSSEEEEEEEEEEECSSCEEEC----------CCEEEEEEGGGGGGBCCSEEE--ECCSSCCCEEECTTSCEEEE--S
T ss_pred ecCCCEEEEEecCCcceeeeeccC----------cceEEEEecccceeeeEEEee--eccCceEEEEecCCCEEEEe--C
Confidence 888887777665432222211100 012333444433322221111 12345666778888876654 4
Q ss_pred CeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEE-EEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEE
Q 001403 815 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNIL 893 (1084)
Q Consensus 815 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~l-a~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l 893 (1084)
+.+.+|++.+++....+..+. ....+.++| ++..+ +.+..++.+.+++.. ..+.+....+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ 223 (346)
T d1jmxb_ 163 PDIYKMDVKTGKYTVALPLRN-WNRKGYSAP-DVLYFWPHQSPRHEFSMLYTI-----------------ARFKDDKQDP 223 (346)
T ss_dssp SSEEEECTTTCCEEEEECSTT-CCCTTBCCC-BCCCCCCCCCTTCEEEEEEEE-----------------EEC-------
T ss_pred CcceEEEccCCCEEEEEecCC-CccceEEec-cccEEEEEecCCCceEeeeee-----------------eeeccCceeE
Confidence 568999999999988887543 455677888 55444 444555566555422 2233445556
Q ss_pred EEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCE
Q 001403 894 VSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPI 973 (1084)
Q Consensus 894 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v 973 (1084)
+++..++.+.+||+.++......... +. ..+..+.+++++.+++...++.|.+||..+++.+..... ...+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~--~~~~ 294 (346)
T d1jmxb_ 224 ATADLLYGYLSVDLKTGKTHTQEFAD----LT---ELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANL--DHTY 294 (346)
T ss_dssp CCCEEEEEEEEEETTTCCEEEEEEEE----CS---SCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEEC--SSCC
T ss_pred eeccCCceEEEEECCCCceEEEEeec----cc---ceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcC--CCCE
Confidence 67777888999999987644322211 22 157889999999999988888999999999998887654 4468
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 974 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 974 ~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
.+++|||||++|++++.||.|+|||+.+++.+.++.
T Consensus 295 ~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~ 330 (346)
T d1jmxb_ 295 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330 (346)
T ss_dssp CEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence 999999999999999999999999999999998877
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=5.1e-21 Score=209.52 Aligned_cols=312 Identities=7% Similarity=0.010 Sum_probs=203.7
Q ss_pred CEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001403 401 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 480 (1084)
Q Consensus 401 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v 480 (1084)
+|+++++.|++|.|||+++++.+..+ .+..+...+.+++|+|||+. ++++++.++.|.+||+.+++.+.++..+....
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-~~~~~~~~~~~i~~spDg~~-l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~ 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEE-ECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEE-ECCCCCCCccEEEECCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence 58999999999999999999776633 23344566889999999994 34677789999999999999988877654332
Q ss_pred E-----EEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCC
Q 001403 481 Y-----SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 555 (1084)
Q Consensus 481 ~-----~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~ 555 (1084)
. .++| ++++.+++++..+.....|.. ...+..+.+||..
T Consensus 80 ~~~~~~~v~~--s~dg~~l~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~d~~ 123 (337)
T d1pbyb_ 80 RVKSLFGAAL--SPDGKTLAIYESPVRLELTHF----------------------------------EVQPTRVALYDAE 123 (337)
T ss_dssp EEECTTCEEE--CTTSSEEEEEEEEEEECSSCE----------------------------------EECCCEEEEEETT
T ss_pred cccceeeEEE--cCCCcEEEEeecCCcceeeec----------------------------------cccccceeecccc
Confidence 2 2233 223334444333222221110 0124568899999
Q ss_pred CceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC
Q 001403 556 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 635 (1084)
Q Consensus 556 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 635 (1084)
+++....+.... .+..++|+|+++++++++. .+.+||..+++....+..+.. .....++|++..+......
T Consensus 124 ~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 194 (337)
T d1pbyb_ 124 TLSRRKAFEAPR----QITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSW---EAETYAQPDVLAVWNQHES 194 (337)
T ss_dssp TTEEEEEEECCS----SCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTT---TTTTBCCCBCCCCCCCCTT
T ss_pred CCeEEEeccccC----CceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCc---cccceecCCcceeeccccc
Confidence 999888887654 5778999999999999864 477899999999888876543 2233445554332221111
Q ss_pred -CeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCcc
Q 001403 636 -NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE 714 (1084)
Q Consensus 636 -g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~ 714 (1084)
+....+... . ..+.........++.+.+|+..
T Consensus 195 ~~~~~~~~~~-------------------~----------------------~~~~~~~~~~~~~~~~~~~~~~------ 227 (337)
T d1pbyb_ 195 SGVMATPFYT-------------------A----------------------RKDIDPADPTAYRTGLLTMDLE------ 227 (337)
T ss_dssp TTEEEEEEEE-------------------E----------------------BTTSCTTSGGGEEEEEEEEETT------
T ss_pred cceeeeeeee-------------------e----------------------eeccceeeecccCccEEEEEcC------
Confidence 111111100 0 0111111222222222222221
Q ss_pred ceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCC
Q 001403 715 CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 794 (1084)
Q Consensus 715 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1084)
.+.+....+. .+.
T Consensus 228 -----------~~~~~~~~~~--------------------------------------------------------~~~ 240 (337)
T d1pbyb_ 228 -----------TGEMAMREVR--------------------------------------------------------IMD 240 (337)
T ss_dssp -----------TCCEEEEEEE--------------------------------------------------------ECS
T ss_pred -----------CCcEEEEEec--------------------------------------------------------CCC
Confidence 0011111111 145
Q ss_pred CCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee
Q 001403 795 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 874 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l 874 (1084)
..+..++++|++.+++.+ ++.+++||+.+++.+..+. +...+.+++|+| ||++|++++.|++|+|||..+++.+.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~~i 317 (337)
T d1pbyb_ 241 VFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp SCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred cceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 566778899999888765 5889999999999998886 556789999999 8999999999999999999999998877
Q ss_pred cc
Q 001403 875 EG 876 (1084)
Q Consensus 875 ~~ 876 (1084)
+-
T Consensus 318 ~~ 319 (337)
T d1pbyb_ 318 DL 319 (337)
T ss_dssp EC
T ss_pred EC
Confidence 63
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.88 E-value=6.3e-20 Score=197.15 Aligned_cols=266 Identities=12% Similarity=0.111 Sum_probs=209.0
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEE-EEeCCCEEEEEEccCCccccceeeeecccccEeEEEeec
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 443 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la-s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~ 443 (1084)
++|.|||+++++...... ....+..++|||||++|+ +++.++.|.+||+.+++.+. .+..|. .+..++|++
T Consensus 12 ~~v~v~D~~t~~~~~~i~----~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~---~~~~~~-~~~~~~~~~ 83 (301)
T d1l0qa2 12 DNISVIDVTSNKVTATIP----VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA---TVPAGS-SPQGVAVSP 83 (301)
T ss_dssp TEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE---EEECSS-SEEEEEECT
T ss_pred CEEEEEECCCCeEEEEEE----CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceee---eeeccc-ccccccccc
Confidence 899999999886554332 235688999999999885 56678999999999987665 455554 468899999
Q ss_pred CCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEE-EEEecCCeEEEEECCCCCceEeecCCCC
Q 001403 444 PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGL 522 (1084)
Q Consensus 444 d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 522 (1084)
++.. +++++..++.+.+|+..+++....+..+. ...++++++ ++..+ +++..++.+.+|+..+......+....
T Consensus 84 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 158 (301)
T d1l0qa2 84 DGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSP--DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR- 158 (301)
T ss_dssp TSSE-EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-
T ss_pred cccc-ccccccccceeeecccccceeeeeccccc-cceEEEeec--CCCeeeeeeccccceeeeeccccceeeecccCC-
Confidence 9985 55667778899999999999888887554 566778854 55555 566678889999998887776665544
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE---CCCcEEEEEC
Q 001403 523 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG---DDHVIKIWDM 599 (1084)
Q Consensus 523 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~ 599 (1084)
.+..++++|+++.++++..+ ...+.+|+....+.......+. .+..++|+++++.+++++ .++.|++||.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~ 231 (301)
T d1l0qa2 159 SPKGIAVTPDGTKVYVANFD---SMSISVIDTVTNSVIDTVKVEA----APSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (301)
T ss_dssp SEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEECSS----EEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred CceEEEeeccccceeeeccc---ccccccccccceeeeecccccC----Ccceeeccccccccccccccceeeeeeeeec
Confidence 56789999999999887642 4568888888887777666544 577899999999887754 3468999999
Q ss_pred CCCeEEEEEcCCCCCCCcceEEEecCCCEE-EEEECCCeEEEEEcCCCCeeeecc
Q 001403 600 NKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAG 653 (1084)
Q Consensus 600 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~ 653 (1084)
.+++.+..+..+. .+..++|+|||++| ++++.++.|++||+.+++.+..+.
T Consensus 232 ~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 232 GTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp TTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 9999998887543 36899999999987 566678999999999998776654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=6e-21 Score=209.87 Aligned_cols=323 Identities=10% Similarity=0.016 Sum_probs=212.9
Q ss_pred EEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeee-cccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001403 394 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 472 (1084)
Q Consensus 394 v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~ 472 (1084)
++|+++++||++++.+++|.|||+.+++.++ ++. .|...+.+++|+|||+. ++++++.++.|.+||+.+++.+.+
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~---t~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~ 77 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFH 77 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEE---EEEcCCCCCcceEEECCCCCE-EEEEECCCCcEEEEeCccCeeeee
Confidence 5789999999999999999999999997665 443 45567889999999994 456777899999999999998877
Q ss_pred eccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCC--------C
Q 001403 473 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK--------E 544 (1084)
Q Consensus 473 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~--------~ 544 (1084)
+........... .+..++|+|||++++++..+. .
T Consensus 78 ~~~~~~~~~~~~--------------------------------------~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~ 119 (346)
T d1jmxb_ 78 ANLSSVPGEVGR--------------------------------------SMYSFAISPDGKEVYATVNPTQRLNDHYVV 119 (346)
T ss_dssp EESCCSTTEEEE--------------------------------------CSSCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred ecccccccccCC--------------------------------------ceEEEEEecCCCEEEEEecCCcceeeeecc
Confidence 653222110000 011244555555554443210 1
Q ss_pred CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec
Q 001403 545 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 624 (1084)
Q Consensus 545 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 624 (1084)
.+..+.+||..+++....+..+.. ...+..+.+++++..+++ ++.+.+|+..+++.+..+..+.. ...+.++|
T Consensus 120 ~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 192 (346)
T d1jmxb_ 120 KPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRNW---NRKGYSAP 192 (346)
T ss_dssp CCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTTC---CCTTBCCC
T ss_pred CcceEEEEecccceeeeEEEeeec-cCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecCCC---ccceEEec
Confidence 245688898888776655544331 134556677777766554 35689999999999988876543 45566777
Q ss_pred CCCEEEEEEC-CCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccc
Q 001403 625 NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 703 (1084)
Q Consensus 625 ~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 703 (1084)
++..+..... ++.+.+++...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------- 214 (346)
T d1jmxb_ 193 DVLYFWPHQSPRHEFSMLYTIA---------------------------------------------------------- 214 (346)
T ss_dssp BCCCCCCCCCTTCEEEEEEEEE----------------------------------------------------------
T ss_pred cccEEEEEecCCCceEeeeeee----------------------------------------------------------
Confidence 7765543322 33333332110
Q ss_pred cccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCcc
Q 001403 704 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 783 (1084)
Q Consensus 704 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1084)
.+.+....+.+...++.+.+|+... +...
T Consensus 215 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~ 243 (346)
T d1jmxb_ 215 -----------------------------RFKDDKQDPATADLLYGYLSVDLKT----------------------GKTH 243 (346)
T ss_dssp -----------------------------EC-------CCCEEEEEEEEEETTT----------------------CCEE
T ss_pred -----------------------------eeccCceeEeeccCCceEEEEECCC----------------------CceE
Confidence 0011111122222233334443322 1111
Q ss_pred ccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001403 784 MVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 863 (1084)
Q Consensus 784 ~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iw 863 (1084)
... .. .+...+..+.+++++.+++...++.+.+||..+++.+..+. +...+.+++|+| ||++|++++.||.|++|
T Consensus 244 ~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~~l~v~~~d~~v~v~ 318 (346)
T d1jmxb_ 244 TQE-FA--DLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVF 318 (346)
T ss_dssp EEE-EE--ECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEE
T ss_pred EEE-ee--cccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcC-CCCEEEEEeCCCcEEEE
Confidence 110 00 25667778899999999998888899999999999988886 445689999999 89999999999999999
Q ss_pred EcCCceeeeeeccccc
Q 001403 864 NARSSEVISKLEGHSK 879 (1084)
Q Consensus 864 d~~~~~~~~~l~~h~~ 879 (1084)
|..+++.+.+++.+.+
T Consensus 319 D~~t~~~i~~i~~p~g 334 (346)
T d1jmxb_ 319 NPDTLEKVKNIKLPGG 334 (346)
T ss_dssp ETTTTEEEEEEECSSS
T ss_pred ECccCCEEEEEECCCC
Confidence 9999999988874443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.84 E-value=7e-18 Score=187.36 Aligned_cols=332 Identities=11% Similarity=0.028 Sum_probs=221.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-----CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEE-------
Q 001403 386 DPGVSVNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC------- 453 (1084)
Q Consensus 386 ~h~~~V~~v~fspdg~~las~~-----~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~------- 453 (1084)
.+..++..++++|||+.+++.. ..+.|.+||..+++.+. .+..+..+ .++|+|||+ +++++
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~~--~~a~SpDG~--~l~va~~~~~~~ 90 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFLP--NPVAAHSGS--EFALASTSFSRI 90 (373)
T ss_pred cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE---EEeCCCCc--cEEEcCCCC--EEEEEeecCCcc
Confidence 4778999999999999998752 34579999999997665 45555433 799999999 45544
Q ss_pred ---eCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEc
Q 001403 454 ---GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS 530 (1084)
Q Consensus 454 ---~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s 530 (1084)
..++.|.+||..+++.+..+..+......+...+ ..+.|+
T Consensus 91 ~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~s 133 (373)
T d2madh_ 91 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS-------------------------------------WMNANT 133 (373)
T ss_pred cccccceEEEEEECCCCcEEEEEecCCcceeEeccCC-------------------------------------CcEEEE
Confidence 3467899999999998888776655544432211 135677
Q ss_pred CCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEE-EEEECCCcEEEEECCCCeEEEEEc
Q 001403 531 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTTID 609 (1084)
Q Consensus 531 ~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~ 609 (1084)
++++.++....+. ++.+.+|+..+.+..... ....++.++|+++.+ ++.+.|+.+.+|+...+.......
T Consensus 134 ~dg~~~~v~~~~~--~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~ 204 (373)
T d2madh_ 134 PNNADLLFFQFAA--GPAVGLVVQGGSSDDQLL-------SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV 204 (373)
T ss_pred eCCCcEEEEEEcC--CCceEEeeccCCeEEEEe-------ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEe
Confidence 8888777665432 455888888877655443 345678899998766 568899999999999988776654
Q ss_pred CCC----CCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCC
Q 001403 610 AGG----GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 685 (1084)
Q Consensus 610 ~~~----~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~ 685 (1084)
... .........+++++. ++..+.++.+.+|+............
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~------------------------------- 252 (373)
T d2madh_ 205 GAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPI------------------------------- 252 (373)
T ss_pred eeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEee-------------------------------
Confidence 321 111223445555554 44556778899998876533211110
Q ss_pred CCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcc
Q 001403 686 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 765 (1084)
Q Consensus 686 ~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~ 765 (1084)
+. +........+.|.+...++.+.++...
T Consensus 253 --------------------~~-----------------~~~~~~~~~~~~~~~~~~~~~~d~~~~-------------- 281 (373)
T d2madh_ 253 --------------------DA-----------------LSGGRKADTWRPGGWQQVAYLKSSDGI-------------- 281 (373)
T ss_pred --------------------cc-----------------ccCcEEeeeeccCcceeeEEecCCCeE--------------
Confidence 00 001111222223222222222222111
Q ss_pred cceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEc
Q 001403 766 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN 844 (1084)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s 844 (1084)
..+.+++..++... ++.+.+||..+++.+..+. +...+.+++|+
T Consensus 282 ----------------------------------~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~s 326 (373)
T d2madh_ 282 ----------------------------------YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVA 326 (373)
T ss_pred ----------------------------------EEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEEC
Confidence 11222333444443 6889999999999998876 55678999999
Q ss_pred CCCCc--EEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCC
Q 001403 845 PHDNN--VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA 889 (1084)
Q Consensus 845 ~~d~~--~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd 889 (1084)
| ||+ ++++++.|++|++||+.+++.+..+.+|....+.|++.++
T Consensus 327 p-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 327 Q-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred C-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 9 776 4578899999999999999999999988888888887654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.81 E-value=1.8e-17 Score=183.98 Aligned_cols=310 Identities=13% Similarity=0.032 Sum_probs=212.8
Q ss_pred ccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe---
Q 001403 331 IEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY--- 407 (1084)
Q Consensus 331 ~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~--- 407 (1084)
..+..++..+++||||+++++..-. ..-..+.+.|||..+++.... +..+. ...++|||||++|++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~----~~~~~~~v~v~D~~tg~~~~~---~~~~~--~~~~a~SpDG~~l~va~~~~ 87 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPA----HHSAIIQQWVLDAGSGSILGH---VNGGF--LPNPVAAHSGSEFALASTSF 87 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEccc----ccCCCceEEEEECCCCCEEEE---EeCCC--CccEEEcCCCCEEEEEeecC
Confidence 4677799999999999999874221 111126799999988776644 33333 33799999999999875
Q ss_pred -------CCCEEEEEEccCCccccceeeeeccccc-------EeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe
Q 001403 408 -------SKHIVQLYAYHGGSDARQQLEIDAHVGN-------VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 473 (1084)
Q Consensus 408 -------~dg~v~iwd~~~~~~~~~~~~l~~h~~~-------V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~ 473 (1084)
.++.|.+||..+++.+. .+..+... ...+.|++|++.+++.....++.+.+|+..+++.....
T Consensus 88 ~~~~~~~~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (373)
T d2madh_ 88 SRIAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL 164 (373)
T ss_pred CcccccccceEEEEEECCCCcEEE---EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe
Confidence 35789999999987655 33334332 24578999999755566666788999998887765544
Q ss_pred ccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCC------CCeEEEEEEcCCCCEEEEEeeCCCCCe
Q 001403 474 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGES 547 (1084)
Q Consensus 474 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~s~d~~~l~~~~~~~~~~~ 547 (1084)
. ...++.+++.+. ..+++.+.||.+.+|+............. ......+.+++++..++... ++
T Consensus 165 ~----~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 234 (373)
T d2madh_ 165 S----SPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY-----SG 234 (373)
T ss_pred c----cceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecC-----Cc
Confidence 3 345667755432 46678999999999999877665443221 12344556667666665442 45
Q ss_pred eEEEecCCCceEeeeee--ccc-------cccCceEEEEEcCCCCEEE----------EEECCCcEEEEECCCCeEEEEE
Q 001403 548 FLVEWNESEGAIKRTYQ--GLQ-------LQHNSVSVVHFDTAKDQIL----------AAGDDHVIKIWDMNKVQLLTTI 608 (1084)
Q Consensus 548 ~i~~wd~~~~~~~~~~~--~~~-------~~~~~v~~~~~s~~~~~l~----------~~~~dg~i~iwd~~~~~~~~~~ 608 (1084)
.+.+|+..++....... ... ........+++++++..++ ....++.+.+||..+++.+..+
T Consensus 235 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~ 314 (373)
T d2madh_ 235 KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI 314 (373)
T ss_pred eEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe
Confidence 58888877665432221 111 0012233455666665544 4456778999999999999988
Q ss_pred cCCCCCCCcceEEEecCCCE--EEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEc
Q 001403 609 DAGGGLPENPRICFNKNGTL--LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVN 665 (1084)
Q Consensus 609 ~~~~~~~~v~~v~~s~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 665 (1084)
.... .+..++|+|||+. +++++.|+.|++||+.+++.+..+..+...-+.+++.
T Consensus 315 ~~~~---~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~ 370 (373)
T d2madh_ 315 SLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVM 370 (373)
T ss_pred cCCC---CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEe
Confidence 7543 3789999999984 4678889999999999999999888766655555543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.77 E-value=2.1e-17 Score=182.06 Aligned_cols=301 Identities=14% Similarity=0.058 Sum_probs=197.8
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe--------
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-------- 407 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~-------- 407 (1084)
++.-.+.+|||+++++..-. .+. ...+|.|||..+++..... ..+ .+..++|||||++|++.+
T Consensus 3 p~~~~a~spdg~~~~v~~~~--~~~--~~~~v~v~D~~tg~~~~~~---~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~ 73 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPA--HFA--AVTQQFVIDGEAGRVIGMI---DGG--FLPNPVVADDGSFIAHASTVFSRIAR 73 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECG--GGC--SSEEEEEEETTTTEEEEEE---EEC--SSCEEEECTTSSCEEEEEEEEEETTE
T ss_pred CcEeEeeCCCCCEEEEEecc--cCC--CcCeEEEEECCCCcEEEEE---ECC--CCCceEEcCCCCEEEEEeCCCccccc
Confidence 34445679999999874211 111 2378999999987665432 223 344799999999998753
Q ss_pred --CCCEEEEEEccCCccccceeeeecc----cccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEE
Q 001403 408 --SKHIVQLYAYHGGSDARQQLEIDAH----VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 481 (1084)
Q Consensus 408 --~dg~v~iwd~~~~~~~~~~~~l~~h----~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~ 481 (1084)
.++.|.+||+.+++..........+ ......++|+++++.++++..+.+..+.+|+..+++.+..+..+.....
T Consensus 74 g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (355)
T d2bbkh_ 74 GERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI 153 (355)
T ss_dssp EEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE
T ss_pred cCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE
Confidence 4788999999998766533221111 1234568999999965555556678999999999999888775543221
Q ss_pred EEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec------CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCC
Q 001403 482 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD------APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 555 (1084)
Q Consensus 482 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~ 555 (1084)
. . . .....++.+.||...++............ .+...+....+++++..++.++. ++.+++|+..
T Consensus 154 ~-~---~-~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~ 224 (355)
T d2bbkh_ 154 F-P---T-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY----TGKIHQIDLS 224 (355)
T ss_dssp E-E---E-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT----TSEEEEEECT
T ss_pred e-e---c-CCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC----CCeEEEEecC
Confidence 1 1 1 11234455566665555444333222111 12223445677888888887764 6679999998
Q ss_pred CceEee--eeeccc-------cccCceEEEEEcCCCCEEEEEECC----------CcEEEEECCCCeEEEEEcCCCCCCC
Q 001403 556 EGAIKR--TYQGLQ-------LQHNSVSVVHFDTAKDQILAAGDD----------HVIKIWDMNKVQLLTTIDAGGGLPE 616 (1084)
Q Consensus 556 ~~~~~~--~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~ 616 (1084)
.++... ....+. ........+++++++..++....+ ..|.+||..+++.+..+.....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~--- 301 (355)
T d2bbkh_ 225 SGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE--- 301 (355)
T ss_dssp TSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE---
T ss_pred CCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCC---
Confidence 775422 122111 001223457899999988876533 4699999999999988865433
Q ss_pred cceEEEecCCC--EEEEEECCCeEEEEEcCCCCeeeecccccc
Q 001403 617 NPRICFNKNGT--LLAVIANENRIKILETPESNSVDAAGVLSD 657 (1084)
Q Consensus 617 v~~v~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 657 (1084)
+.+++|+|||+ +++++..|+.|++||..+++.+..+..+..
T Consensus 302 ~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~ 344 (355)
T d2bbkh_ 302 IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH 344 (355)
T ss_dssp ECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS
T ss_pred EEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCC
Confidence 68999999998 345666789999999999999888765443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.77 E-value=2.7e-17 Score=181.10 Aligned_cols=317 Identities=10% Similarity=0.031 Sum_probs=210.4
Q ss_pred EEEcCCCCEEEEEeeC-CCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE----------CCCcEE
Q 001403 527 MAYSANGRRLFSCGTS-KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIK 595 (1084)
Q Consensus 527 ~~~s~d~~~l~~~~~~-~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~ 595 (1084)
.+.+|||+.+++.... ......|++||..+++.+..+..+. ...++|+|||++|++++ .|+.|+
T Consensus 7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~-----~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~ 81 (355)
T d2bbkh_ 7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF-----LPNPVVADDGSFIAHASTVFSRIARGERTDYVE 81 (355)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS-----SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC-----CCceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence 3568999999776432 1235679999999999998887654 33689999999888753 478999
Q ss_pred EEECCCCeEEEEEcCCCCC-----CCcceEEEecCCCEEEEEE--CCCeEEEEEcCCCCeeeeccccccceeEEEEcCCC
Q 001403 596 IWDMNKVQLLTTIDAGGGL-----PENPRICFNKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 668 (1084)
Q Consensus 596 iwd~~~~~~~~~~~~~~~~-----~~v~~v~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~ 668 (1084)
+||..+++.+..+..+... .....++|+|++++++++. .+..+.+|+..+++.+..+..+......
T Consensus 82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 154 (355)
T d2bbkh_ 82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF------- 154 (355)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEE-------
T ss_pred EEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEe-------
Confidence 9999999998887543221 1246789999999988775 4578999999998877666543221110
Q ss_pred ceeeeeccCceeEecCCCCCCCCccce-ecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecC
Q 001403 669 TVTGAGIANGSVSVNEDPKEDVKPEIS-VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 747 (1084)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 747 (1084)
.......+.+ +++++.+.. ...++.+.+++...... .+...+....+++++..++.++.+
T Consensus 155 ----~~~~~~~~~~----~~dg~~~~v~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 215 (355)
T d2bbkh_ 155 ----PTAPDTFFMH----CRDGSLAKVAFGTEGTPEITHTEVFHP-----------EDEFLINHPAYSQKAGRLVWPTYT 215 (355)
T ss_dssp ----EEETTEEEEE----ETTSCEEEEECCSSSCCEEEECCCCSC-----------TTSCBCSCCEEETTTTEEEEEBTT
T ss_pred ----ecCCcceEEE----cCCCCEEEEEecCCCeEEEEecccccc-----------eecceeeeccccCCCCeEEEecCC
Confidence 0001111222 234444332 22333344433322111 133334456778888889999999
Q ss_pred CceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-C----------Ce
Q 001403 748 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G----------GV 816 (1084)
Q Consensus 748 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-d----------g~ 816 (1084)
+.+.+|++..+. +.+++..++.......... .......+++++++..++... + +.
T Consensus 216 ~~~~v~~~~~~~------------~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 281 (355)
T d2bbkh_ 216 GKIHQIDLSSGD------------AKFLPAVEALTEAERADGW--RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF 281 (355)
T ss_dssp SEEEEEECTTSS------------CEECCCEESSCHHHHHTTE--EECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEE
T ss_pred CeEEEEecCCCc------------EEEEeccCCcccceEeeee--eccceEEEEEeCCCCeEEEEeccCCceeecCCCCe
Confidence 999999987653 2233322222111111100 123345689999999887764 1 36
Q ss_pred EEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCc--EEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCC
Q 001403 817 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL 890 (1084)
Q Consensus 817 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~ 890 (1084)
|.+||..+++.+.++. +...+.+++|+| ||+ +++++..|++|++||+.+++.+.++.++......+.+.++|
T Consensus 282 v~v~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~ 355 (355)
T d2bbkh_ 282 VVVLDAKTGERLAKFE-MGHEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355 (355)
T ss_dssp EEEEETTTCCEEEEEE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred EEEEeCCCCcEEEEec-CCCCEEEEEEcC-CCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence 9999999999988876 345688999999 776 45677889999999999999999998776666666665543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=3.1e-16 Score=170.65 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=111.9
Q ss_pred EEEEEecCCeEEEEECCCCCceE--eecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccccc
Q 001403 493 FIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 570 (1084)
Q Consensus 493 ~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 570 (1084)
.+++++.|++|++|+++...... ....+...+..++|+|||++|++++. .++.|.+|++........+..+....
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~---~d~~i~~~~i~~~~~~~~~~~~~~~~ 82 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESALP 82 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEeeecccC
Confidence 45778899999999998765433 23356678899999999999977653 26679999988665444443333233
Q ss_pred CceEEEEEcCCCCEEEEEEC-CCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEEC-CCeEEEEEcCCC
Q 001403 571 NSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-ENRIKILETPES 646 (1084)
Q Consensus 571 ~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~~~ 646 (1084)
..+..++|+|||+++++++. ++.+.+|+..................+.++.++|+++++++++. +..+.+|+....
T Consensus 83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~ 160 (333)
T d1ri6a_ 83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD 160 (333)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccC
Confidence 56778999999999999874 77899999887776655544344445788999999998888775 456888886654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=3.1e-16 Score=170.67 Aligned_cols=209 Identities=9% Similarity=0.094 Sum_probs=140.4
Q ss_pred CccEEEecCCCCEEEEEe--CCeEEEEEcCCceeEEE--EcCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEEcCCcee
Q 001403 796 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEV 870 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~la~g~-~dg~i~iwd~~~~~~ 870 (1084)
.+..++|+|||++|++++ ++.+.+|+......... ...+...+.++.++| +++++++++ .+..|.+|+..+...
T Consensus 84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~ 162 (333)
T d1ri6a_ 84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGH 162 (333)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccceeeEEEeccCCc
Confidence 355688888988888886 47788888776554333 344667788999999 777777666 456899999876532
Q ss_pred eee------ecccccCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcee--eeeeeecCCCCccCCCCceEEEEccCCC
Q 001403 871 ISK------LEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQ--TCRSLQTPDGVMTLAPSETHIQFHKDQT 941 (1084)
Q Consensus 871 ~~~------l~~h~~~V~~l~~spd~~~l~s~s-~dg~I~iwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 941 (1084)
... ...+......++|++++.++.... ..+...+|++...... ....+...............+++++|++
T Consensus 163 ~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 242 (333)
T d1ri6a_ 163 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 242 (333)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred ceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccC
Confidence 211 122345678899999999887655 4567888887653321 1122222222222223567889999999
Q ss_pred EEEEE--eCCeEEEEEcCCcceeeEee--cCCCCCEEEEEEccCCCEEEEEeC-CCcEEEE--EcCCCcee
Q 001403 942 RFLLV--HETHLAIYEAEELTCLKQWF--PISSVPISQATFSCDCRMVFTSFV-DGTLSIH--EASNLEVQ 1005 (1084)
Q Consensus 942 ~la~~--~d~~i~vwd~~~~~~~~~~~--~~h~~~v~~l~fs~dg~~l~t~~~-dg~i~vw--d~~~~~~~ 1005 (1084)
++.+. .++.+.+|++.......... ..+...+.+++|||||++|++++. ++.|++| |..+|++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 243 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH 313 (333)
T ss_dssp EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred ceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence 88874 56789999887554433222 223456788999999999887764 5889999 55677654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.59 E-value=2.2e-13 Score=155.52 Aligned_cols=238 Identities=13% Similarity=0.058 Sum_probs=148.2
Q ss_pred eEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccc--ceeeeecCCCCCeEEEEEcCCCCEEEEEeC-------
Q 001403 338 MSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSML--FKTALVRDPGVSVNRVVWSPDGSLLGVAYS------- 408 (1084)
Q Consensus 338 ~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~--~~~~~~~~h~~~V~~v~fspdg~~las~~~------- 408 (1084)
..+.|++|++++... | +.+.+||+.++... +....+..|...|.++.|||||++||+++.
T Consensus 20 ~~~~W~~d~~~~~~~--~---------~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~ 88 (470)
T d2bgra1 20 YSLRWISDHEYLYKQ--E---------NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRH 88 (470)
T ss_dssp CCCEECSSSEEEEES--S---------SCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSS
T ss_pred cCCEeCCCCEEEEEc--C---------CcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeee
Confidence 357799999988752 2 78999999987653 222345667789999999999999998854
Q ss_pred --CCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCC---------
Q 001403 409 --KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG--------- 477 (1084)
Q Consensus 409 --dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~--------- 477 (1084)
++.+.|||+.+++.. .+..|...+..+.|||||+ .+|.. .++.+.+|+..+|...+....+.
T Consensus 89 s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~ 161 (470)
T d2bgra1 89 SYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGIT 161 (470)
T ss_dssp CEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBC
T ss_pred ccCceEEEEECCCCccc----ccccCCccccccccccCcc--eeeEe-ecccceEEECCCCceeeeeeccCCCccccccc
Confidence 567899999998643 4678889999999999999 56654 47889999999887665433221
Q ss_pred ---------CcEEEEeecccCCCcEEEEEecCCe-EEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCe
Q 001403 478 ---------APVYSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 547 (1084)
Q Consensus 478 ---------~~v~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 547 (1084)
+....+.| ++||+.|+....|.+ +..|.+...... .........+.+...+.. ....
T Consensus 162 d~~~~~~~~~~~~~~~w--SPDGk~ia~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~--------~~~~ 228 (470)
T d2bgra1 162 DWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAV--------NPTV 228 (470)
T ss_dssp CHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSC--------CCEE
T ss_pred ceeeeeeecCCccccEE--CCCCCccceeEecCCcCceEEEEeeccC---CCCCCeeeeecccccccc--------CCcc
Confidence 22334556 558889988876644 544433211000 001112222333222221 1134
Q ss_pred eEEEecCCCceEeeeeeccc--------cccCceEEEEEcCCCCEEEEE-ECCC-----cEEEEECCCCeEEE
Q 001403 548 FLVEWNESEGAIKRTYQGLQ--------LQHNSVSVVHFDTAKDQILAA-GDDH-----VIKIWDMNKVQLLT 606 (1084)
Q Consensus 548 ~i~~wd~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~-~~dg-----~i~iwd~~~~~~~~ 606 (1084)
.+.+|++.++........+. .....+..+.|.+++..++.. ...+ .+..+|..++....
T Consensus 229 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~ 301 (470)
T d2bgra1 229 KFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNC 301 (470)
T ss_dssp EEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEE
T ss_pred eEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEE
Confidence 47888887765443322211 112345678888888766553 2222 23444566665543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.58 E-value=5e-14 Score=155.26 Aligned_cols=313 Identities=13% Similarity=-0.015 Sum_probs=193.3
Q ss_pred EEEEEcCCCCEEEEE-eeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE----------CCCc
Q 001403 525 TRMAYSANGRRLFSC-GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHV 593 (1084)
Q Consensus 525 ~~~~~s~d~~~l~~~-~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~ 593 (1084)
..++..++++..... .....+...+++||..+++.+....++. . ..++|+|||+.+++.+ .|+.
T Consensus 23 ~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~---~--~~~a~spDg~~i~~~~~~~~~~~~g~~d~~ 97 (368)
T d1mdah_ 23 CDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF---L--SLAVAGHSGSDFALASTSFARSAKGKRTDY 97 (368)
T ss_dssp BCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT---T--CEEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred cccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC---C--CcceECCCCCEEEEEcccCccccccccCCe
Confidence 344567888875432 2334556779999999999999888765 3 3588999999998864 3678
Q ss_pred EEEEECCCCeEEEEEcCCCCC-----CCcceEEEecCCCEEEEEE-CCCeEEEEEcCCCCeeeeccccccceeEEEEcCC
Q 001403 594 IKIWDMNKVQLLTTIDAGGGL-----PENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 667 (1084)
Q Consensus 594 i~iwd~~~~~~~~~~~~~~~~-----~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~ 667 (1084)
|.+||..+++.+..+..+... .....++|+|||++++++. .++.+.+||+.+++....+..+..... .|.
T Consensus 98 v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~----~~~ 173 (368)
T d1mdah_ 98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI----HPG 173 (368)
T ss_dssp EEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC----EEE
T ss_pred EEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE----ccC
Confidence 999999999999888644221 1235799999999998876 579999999999887776654332211 000
Q ss_pred CceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecC
Q 001403 668 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 747 (1084)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 747 (1084)
.....+.+ ++||..++....++....|... ......+...+....+.+++..+.. .+
T Consensus 174 -------~~~~~v~~----~~Dg~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~--~~ 230 (368)
T d1mdah_ 174 -------AAATHYLG----SCPASLAASDLAAAPAAAGIVG----------AQCTGAQNCSSQAAQANYPGMLVWA--VA 230 (368)
T ss_dssp -------ETTEEECC----CCTTSCEEEECCSSCCCCEECC----------CCSCTTSCBCSCCEEETTTTEEEEC--BS
T ss_pred -------CCceEEEE----cCCCCEEEEEecCCceeeeeee----------cccccccccceeecccccCcEEEEe--cC
Confidence 00001111 2344444433333333332211 1111112333445566667654443 34
Q ss_pred CceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--C--------CeE
Q 001403 748 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--G--------GVI 817 (1084)
Q Consensus 748 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--d--------g~i 817 (1084)
+.+.++++..+. +.+++...+......... ........+++++++..++... + ..|
T Consensus 231 ~~v~~~~~~~~~------------~~~~~~~~~~~~~~~~~~--~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v 296 (368)
T d1mdah_ 231 SSILQGDIPAAG------------ATMKAAIDGNESGRKADN--FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT 296 (368)
T ss_dssp SCCEEEECCSSC------------CEEECCCCSSCTHHHHTT--EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred CCEEEEeecCCc------------eEEEeecccccceeeeee--ecCCCceeEEEcCCCCEEEEEecCCCceeecCCceE
Confidence 556665554332 223333222211111100 0122345688999998877653 1 359
Q ss_pred EEEEcCCceeEEEEcCCCCCeEEEEEcCCCCc--EEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEE
Q 001403 818 SLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 886 (1084)
Q Consensus 818 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~ 886 (1084)
.+||..+++.+.++. +...+.+++|+| |++ +++++..|+.|++||..+++.+..++.... -..|++
T Consensus 297 ~v~D~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~ 364 (368)
T d1mdah_ 297 SSVTASVGQTSGPIS-NGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV 364 (368)
T ss_dssp EEEESSSCCEEECCE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred EEEECCCCcEeEEec-CCCceeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence 999999999887776 345688999999 665 456777899999999999999998875433 334443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.58 E-value=3.2e-14 Score=156.80 Aligned_cols=296 Identities=12% Similarity=0.011 Sum_probs=190.9
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe----
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---- 407 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~---- 407 (1084)
.+.+....++.++||+......-....|. ..+.+||..+++..-. ..++... .++|+|||++|++.+
T Consensus 17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~----~~~~~~d~~~~~~~~~---~~~~~~~--~~a~spDg~~i~~~~~~~~ 87 (368)
T d1mdah_ 17 ASDGSSCDHGPGAISRRSHITLPAYFAGT----TENWVSCAGCGVTLGH---SLGAFLS--LAVAGHSGSDFALASTSFA 87 (368)
T ss_dssp CCCCCCBCCCCCCCTTEEEEEECTTTCSS----EEEEEEETTTTEEEEE---EEECTTC--EEEECTTSSCEEEEEEEET
T ss_pred ccCCCccccccCCCCcceeEEeeccCCCc----ceEEEEeCCCCcEEEE---EeCCCCC--cceECCCCCEEEEEcccCc
Confidence 34446666778899886433211111121 5677778887765443 2333333 589999999999864
Q ss_pred ------CCCEEEEEEccCCccccceeeeeccc-------ccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEec
Q 001403 408 ------SKHIVQLYAYHGGSDARQQLEIDAHV-------GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 474 (1084)
Q Consensus 408 ------~dg~v~iwd~~~~~~~~~~~~l~~h~-------~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~ 474 (1084)
.|+.|.+||..+++.... +..+. .....++|+|||++ ++++...++.+.+||+.+++.+..+.
T Consensus 88 ~~~~g~~d~~v~v~D~~t~~~~~~---i~~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~d~~~~~~~~~~~ 163 (368)
T d1mdah_ 88 RSAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLSVPGASDDQLTK 163 (368)
T ss_dssp TTTSSSEEEEEEEECTTTCCEEEE---EEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEEETTTEEEEEEE
T ss_pred cccccccCCeEEEEECCCCcEeee---ecCCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEEECCCCcEeEEee
Confidence 367899999999876553 32222 12346899999995 23344468999999999999998887
Q ss_pred cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee------cCCCCeEEEEEEcCCCCEEEEEeeCCCCCee
Q 001403 475 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY------DAPGLGCTRMAYSANGRRLFSCGTSKEGESF 548 (1084)
Q Consensus 475 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~------~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 548 (1084)
.+..... .+. ....++..+.||.+.+|++......... ..+...+....+.+++..+...+ +.
T Consensus 164 ~~~~~~~----~~~-~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~ 232 (368)
T d1mdah_ 164 SASCFHI----HPG-AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA------SS 232 (368)
T ss_dssp CSSCCCC----EEE-ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS------SC
T ss_pred ccCcceE----ccC-CCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecC------CC
Confidence 6554321 112 2246777888999888888765543322 22233445677788887766542 22
Q ss_pred EEEecCCCceEeeee--eccc-------cccCceEEEEEcCCCCEEEEEECC---------CcEEEEECCCCeEEEEEcC
Q 001403 549 LVEWNESEGAIKRTY--QGLQ-------LQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWDMNKVQLLTTIDA 610 (1084)
Q Consensus 549 i~~wd~~~~~~~~~~--~~~~-------~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~ 610 (1084)
+++++...+...... .... ........+++++++..++....+ ..|.+||..+++.+..+..
T Consensus 233 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~ 312 (368)
T d1mdah_ 233 ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN 312 (368)
T ss_dssp CEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE
T ss_pred EEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC
Confidence 555555544332211 1111 000123457889998887765322 3589999999998887764
Q ss_pred CCCCCCcceEEEecCCCE--EEEEECCCeEEEEEcCCCCeeeeccc
Q 001403 611 GGGLPENPRICFNKNGTL--LAVIANENRIKILETPESNSVDAAGV 654 (1084)
Q Consensus 611 ~~~~~~v~~v~~s~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~ 654 (1084)
.. .+..++|+|||+. ++++..++.|++||..+++.+..+..
T Consensus 313 ~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~ 355 (368)
T d1mdah_ 313 GH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred CC---ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence 43 3778999999973 45566789999999999998887764
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.56 E-value=2.3e-13 Score=155.39 Aligned_cols=372 Identities=11% Similarity=0.035 Sum_probs=202.5
Q ss_pred EEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccc--cccCceEEEEEcCCCCEEEEEEC---------CCcE
Q 001403 526 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ--LQHNSVSVVHFDTAKDQILAAGD---------DHVI 594 (1084)
Q Consensus 526 ~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~---------dg~i 594 (1084)
.+.|.+++++++.. ++.+.+||+.+++....+..+. .+...|.++.||||+++|+.++. ++.+
T Consensus 21 ~~~W~~d~~~~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~ 94 (470)
T d2bgra1 21 SLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (470)
T ss_dssp CCEECSSSEEEEES------SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred CCEeCCCCEEEEEc------CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceE
Confidence 46788999877642 3459999999998876665543 12356899999999999998753 5778
Q ss_pred EEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeee
Q 001403 595 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 674 (1084)
Q Consensus 595 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~ 674 (1084)
.+||+.+++... +..+ ...+..+.|||||+.+|... ++.+.+|+..+++..+........+. ++
T Consensus 95 ~l~d~~~~~~~~-l~~~--~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~---~~--------- 158 (470)
T d2bgra1 95 DIYDLNKRQLIT-EERI--PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDII---YN--------- 158 (470)
T ss_dssp EEEETTTTEECC-SSCC--CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTE---EE---------
T ss_pred EEEECCCCcccc-cccC--CccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcc---cc---------
Confidence 999999987543 3333 33578999999999999965 57899999998866654432221110 00
Q ss_pred ccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCc-eEEe
Q 001403 675 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV-HLMW 753 (1084)
Q Consensus 675 ~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~-i~vw 753 (1084)
+..| |... ....+....+.|||||+.|+....|.. +..|
T Consensus 159 ---------------------g~~d-----~~~~--------------~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~ 198 (470)
T d2bgra1 159 ---------------------GITD-----WVYE--------------EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLI 198 (470)
T ss_dssp ---------------------SBCC-----HHHH--------------HHTSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred ---------------------cccc-----eeee--------------eeecCCccccEECCCCCccceeEecCCcCceE
Confidence 0000 0000 001111223445555555555544322 3333
Q ss_pred eccCCcc-------------CcCcccceecCCeeecCCCCCccccccCc-------CCCCCCCccEEEecCCCCEEEEEe
Q 001403 754 RWPRNDL-------------TLSTEATTKVPPRLYQPRHGPQFMVNDTT-------DSNSQEAVPCFALSKNDAYLFSAS 813 (1084)
Q Consensus 754 ~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~l~~s~dg~~l~~~s 813 (1084)
.+..... ...+.......+.+|++..+.......-. .......+..+.|.++++.++...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 278 (470)
T d2bgra1 199 EYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWL 278 (470)
T ss_dssp EEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEE
T ss_pred EEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEe
Confidence 3221100 01111111223444555444422111000 001234456788889888776653
Q ss_pred ---CC--eEEEE--EcCCceeEEEEc------CCCC-----CeEEEEEcCC-CCcEEEEEeCCCeEEEE--EcCCceeee
Q 001403 814 ---GG--VISLY--IVMTFKTILTIM------PPSP-----TATSLAFNPH-DNNVIAIGMDDSTILIY--NARSSEVIS 872 (1084)
Q Consensus 814 ---dg--~i~vw--d~~~~~~~~~~~------~~~~-----~i~~l~~s~~-d~~~la~g~~dg~i~iw--d~~~~~~~~ 872 (1084)
.+ .+.++ |..++....... .... ......++++ ++.++.....||..+|| +...+. ..
T Consensus 279 ~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~-~~ 357 (470)
T d2bgra1 279 RRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD-CT 357 (470)
T ss_dssp ESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSC-CE
T ss_pred eccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCc-ee
Confidence 12 23444 445555433211 0000 0112234442 34456667778765555 554444 44
Q ss_pred eecccccCEEEEEEcCCCCEE-EEEeCCC----cEEEEe--CCCCceeeeeeee-cCCCCccCCCCceEEEEccCCCEEE
Q 001403 873 KLEGHSKRVTGLVFSDALNIL-VSSGGDA----QIFVWD--VDGWGIQTCRSLQ-TPDGVMTLAPSETHIQFHKDQTRFL 944 (1084)
Q Consensus 873 ~l~~h~~~V~~l~~spd~~~l-~s~s~dg----~I~iwd--~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~dg~~la 944 (1084)
.+..+...|..+ +++|++.+ +++..++ .-.||. +..+.. ..++. ...++.. .+.+++|||||++++
T Consensus 358 ~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~--~~~lt~~~~~~~~---~~~s~~fSpdgky~~ 431 (470)
T d2bgra1 358 FITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTK--VTCLSCELNPERC---QYYSVSFSKEAKYYQ 431 (470)
T ss_dssp ESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTC--EEESSTTTSTTTB---CBEEEEECTTSSEEE
T ss_pred eeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCc--eeEecccccCCCC---CEEEEEECCCCCEEE
Confidence 444445667776 44455544 3443332 123444 443321 22332 2233333 688999999999988
Q ss_pred EEeC----CeEEEEEcCCcceeeEee
Q 001403 945 LVHE----THLAIYEAEELTCLKQWF 966 (1084)
Q Consensus 945 ~~~d----~~i~vwd~~~~~~~~~~~ 966 (1084)
.... -.+.+|+..+|+.+..+.
T Consensus 432 ~~~s~~~~P~~~l~~~~~g~~v~~le 457 (470)
T d2bgra1 432 LRCSGPGLPLYTLHSSVNDKGLRVLE 457 (470)
T ss_dssp EEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred EEecCCCCCeEEEEECCCCCEEEEEe
Confidence 6422 358999999999888754
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.52 E-value=4.8e-14 Score=152.72 Aligned_cols=296 Identities=10% Similarity=0.032 Sum_probs=188.2
Q ss_pred EEEEecCCeEEEEECCCCCceEeecC------------------------------CCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 494 IFSISVDGKIKAWLYDSLGARVDYDA------------------------------PGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 494 l~s~s~dg~i~iwd~~~~~~~~~~~~------------------------------~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
++|++.+|.|++|++.+++....+.. |........++|||++|++...
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~-- 91 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK-- 91 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET--
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC--
Confidence 56777899999999987766554321 1123444556899999988764
Q ss_pred CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCC--EEEEEECCC-----------------cEEEEECCCCeE
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD--QILAAGDDH-----------------VIKIWDMNKVQL 604 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg-----------------~i~iwd~~~~~~ 604 (1084)
.+.+|.++|+.+++....+.... ...+..++|+|+++ +++..+++. .+..+|..+.+.
T Consensus 92 -~~~rVavIDl~t~k~~~ii~iP~--g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v 168 (441)
T d1qnia2 92 -ANTRVARIRLDIMKTDKITHIPN--VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV 168 (441)
T ss_dssp -TTTEEEEEETTTTEEEEEEECTT--CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE
T ss_pred -CCCEEEEEECCCCcEeeEEecCC--CCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee
Confidence 36789999999999888766432 25789999999998 444444432 245688888888
Q ss_pred EEEEcCCCCCCCcceEEEecCCCEEEEEECCC-eEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEec
Q 001403 605 LTTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 683 (1084)
Q Consensus 605 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~ 683 (1084)
...+...+. ...++|+|+|+++++.+.+. .+..++..+......+
T Consensus 169 ~~qI~v~~~---p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i------------------------------- 214 (441)
T d1qnia2 169 AWQVIVDGN---LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWV------------------------------- 214 (441)
T ss_dssp EEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEE-------------------------------
T ss_pred eEEEecCCC---ccceEECCCCCEEEEEecCCCceEEEeccCcceEEEE-------------------------------
Confidence 887776544 57899999999998887652 1211111111111000
Q ss_pred CCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcC
Q 001403 684 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 763 (1084)
Q Consensus 684 ~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~ 763 (1084)
.+.+ ....++++++|+++.. +.++.+.++....
T Consensus 215 -------------------~v~n---------------------~p~~~~~~~dGk~~~v-~~~~v~vvd~~~~------ 247 (441)
T d1qnia2 215 -------------------VVFN---------------------VERIAAAVKAGNFKTI-GDSKVPVVDGRGE------ 247 (441)
T ss_dssp -------------------EEEE---------------------HHHHHHHHHTTCCBCC-TTCCCCEEECSSS------
T ss_pred -------------------EeCC---------------------ccceEEEecCCCEEEe-CCCCcEEEEcccC------
Confidence 0000 0011234566665433 2344444433211
Q ss_pred cccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--CCeEEEEEcCCcee-----------EEE
Q 001403 764 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT-----------ILT 830 (1084)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~-----------~~~ 830 (1084)
...+.... -......+.++|||+++++++ ++++.+||+++.+. +..
T Consensus 248 ----------------~~v~~~IP-----vgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~ 306 (441)
T d1qnia2 248 ----------------SEFTRYIP-----VPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA 306 (441)
T ss_dssp ----------------CSSEEEEC-----CBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred ----------------CceEEEEe-----CCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence 11111111 123356799999999998876 79999999875332 111
Q ss_pred EcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc----------eeeeee-----cccccCEEEEEEcCCCCEEEE
Q 001403 831 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS----------EVISKL-----EGHSKRVTGLVFSDALNILVS 895 (1084)
Q Consensus 831 ~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~----------~~~~~l-----~~h~~~V~~l~~spd~~~l~s 895 (1084)
.....-.....+|++ +|..+.+...|.+|..|++... ..+..+ .||...+.+.+|+|||++|++
T Consensus 307 ~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s 385 (441)
T d1qnia2 307 EPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVV 385 (441)
T ss_dssp CCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEE
T ss_pred ecccccCcccceecC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEe
Confidence 111122345668999 8989999999999999998521 223333 578888888899999999999
Q ss_pred Ee
Q 001403 896 SG 897 (1084)
Q Consensus 896 ~s 897 (1084)
++
T Consensus 386 ~~ 387 (441)
T d1qnia2 386 LS 387 (441)
T ss_dssp EE
T ss_pred cC
Confidence 94
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.43 E-value=1e-13 Score=150.14 Aligned_cols=328 Identities=9% Similarity=-0.018 Sum_probs=201.5
Q ss_pred EEEEeCCCEEEEEEccCCccccceeeee---------------------------cccccEeEEEeecCCCcEEEEEEeC
Q 001403 403 LGVAYSKHIVQLYAYHGGSDARQQLEID---------------------------AHVGNVNDLAFSAPCKQISVITCGD 455 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~~~~~~~~l~---------------------------~h~~~V~~l~~s~d~~~l~l~s~~~ 455 (1084)
+++++.+|.|.||++.+++.++.+..+. .|--......++|||++ ++++...
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~-lfV~d~~ 92 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKY-LFINDKA 92 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEE-EEEEETT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCE-EEEEcCC
Confidence 4566778889999988876554332221 12233555667899995 3456667
Q ss_pred CCcEEEEECCCCceeeEec-cCCCcEEEEeecccCCCcEEEEEecCC-----------------eEEEEECCCCCceEee
Q 001403 456 DKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDG-----------------KIKAWLYDSLGARVDY 517 (1084)
Q Consensus 456 d~~i~vwd~~~g~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg-----------------~i~iwd~~~~~~~~~~ 517 (1084)
+++|.++|++++++...+. .+...+..++|+++++-.+++..+.+. .+..+|..+.+.....
T Consensus 93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI 172 (441)
T d1qnia2 93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV 172 (441)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence 8899999999999887664 356788899997655444655555432 2345777776665555
Q ss_pred cCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEE
Q 001403 518 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 597 (1084)
Q Consensus 518 ~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 597 (1084)
.... ....+.++|||+++++.+.+.+ .+..++..+.+....+.... ....+.++|+|+++.. +.++.+.++
T Consensus 173 ~v~~-~p~~v~~spdGk~a~vt~~nse---~~~~id~~t~~~~d~i~v~n----~p~~~~~~~dGk~~~v-~~~~v~vvd 243 (441)
T d1qnia2 173 IVDG-NLDNTDADYTGKYATSTCYNSE---RAVDLAGTMRNDRDWVVVFN----VERIAAAVKAGNFKTI-GDSKVPVVD 243 (441)
T ss_dssp EESS-CCCCEEECSSSSEEEEEESCTT---CCSSHHHHTCSSBCEEEEEE----HHHHHHHHHTTCCBCC-TTCCCCEEE
T ss_pred ecCC-CccceEECCCCCEEEEEecCCC---ceEEEeccCcceEEEEEeCC----ccceEEEecCCCEEEe-CCCCcEEEE
Confidence 4333 4678999999999988765322 23344544444333332221 1223456788887655 446788888
Q ss_pred ECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEE-EECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeecc
Q 001403 598 DMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 676 (1084)
Q Consensus 598 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~ 676 (1084)
+......+..+..... ...+.++|||+++++ +..++++.+||+.... ..+.++.....++...
T Consensus 244 ~~~~~~v~~~IPvgks---PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~--~~~~~~~~~~~~~~~~----------- 307 (441)
T d1qnia2 244 GRGESEFTRYIPVPKN---PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLD--DLFEDKIELRDTIVAE----------- 307 (441)
T ss_dssp CSSSCSSEEEECCBSS---CCCEEECTTSCEEEEECTTSSBEEEEEGGGHH--HHTTTSSCGGGGEEEC-----------
T ss_pred cccCCceEEEEeCCCC---ccCceECCCCCEEEEeCCcCCcEEEEEeehhh--hHhhccCCcceEEEee-----------
Confidence 8887777877765443 468999999998765 4568999999987421 1111111111111110
Q ss_pred CceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeecc
Q 001403 677 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 756 (1084)
Q Consensus 677 ~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~ 756 (1084)
+. ..-.....+|+++|..+.+...|..|..|++.
T Consensus 308 -----------------------------------~~-----------~glgplh~~fd~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 308 -----------------------------------PE-----------LGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp -----------------------------------CB-----------CCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred -----------------------------------cc-----------cccCcccceecCCceEEEcccccceEEEeccc
Confidence 00 00122446799999888888889999999985
Q ss_pred CCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe
Q 001403 757 RNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 813 (1084)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s 813 (1084)
.......+.. .-.+|+... .. ..+ +|...+.+.+++|||+||++++
T Consensus 342 ~~~~~~~~~~----~~~v~~~~~---v~--y~~--GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 342 DAIKHYNGDR----VNYIRQKLD---VQ--YQP--GHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp HHHHHHTTCC----CCCEEEEEE---CS--SCE--EEEEETTTTSTTCCCCEEEEEE
T ss_pred hhhhhhccCC----CceeEeccc---cc--cCC--CCCccccccccCCCCcEEEecC
Confidence 3211111110 011222000 00 011 4777788889999999999995
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.26 E-value=1.4e-09 Score=117.85 Aligned_cols=253 Identities=9% Similarity=0.114 Sum_probs=152.2
Q ss_pred CCCCccEEEecCCCCEEEEEeCCeEEEEEcCC-ceeEEEE-cCCCCCeEEEEEcCCCCcE--EEEEe-CCCeEEEEEcCC
Q 001403 793 SQEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTI-MPPSPTATSLAFNPHDNNV--IAIGM-DDSTILIYNARS 867 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~-~~~~~~~-~~~~~~i~~l~~s~~d~~~--la~g~-~dg~i~iwd~~~ 867 (1084)
....+..|+++|++++|.+++.+.+..|.+.. +...... .........+++++ +++. +++.. ..++|..+.+..
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccC
Confidence 34556789999999999998888888887763 2222211 12234456788888 6764 33332 245665554422
Q ss_pred -c------------ee---eee-ecccccCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCC-ceeeeeeeecCCCCccCC
Q 001403 868 -S------------EV---ISK-LEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGW-GIQTCRSLQTPDGVMTLA 928 (1084)
Q Consensus 868 -~------------~~---~~~-l~~h~~~V~~l~~spd~~~l~s~s~-dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~ 928 (1084)
+ +. ... -......+.+++|+|||++|++++. ...|.+|+.... ............. .
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~----g 192 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP----G 192 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST----T
T ss_pred CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCC----C
Confidence 1 10 000 0112234789999999998888764 346888876543 2222112222211 1
Q ss_pred CCceEEEEccCCCEEEEE--eCCeEEEEEcCCcceeeEee------------------cCCCCCEEEEEEccCCCEEEEE
Q 001403 929 PSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWF------------------PISSVPISQATFSCDCRMVFTS 988 (1084)
Q Consensus 929 ~~v~~~~~s~dg~~la~~--~d~~i~vwd~~~~~~~~~~~------------------~~h~~~v~~l~fs~dg~~l~t~ 988 (1084)
.....++|+|||+++.+. .+++|.+|++..+....... ..+......+.++|||++|+++
T Consensus 193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs 272 (365)
T d1jofa_ 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence 258899999999999885 46789999987654321110 0112345678999999999887
Q ss_pred eC------CCcEEEEEcCCCceeEEe-ccccccCCCCcccceeeeEEEECCCCCCEEEEE-eCCCcEEEEcCCCC
Q 001403 989 FV------DGTLSIHEASNLEVQCRI-LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG-LTNGEVYVIEPNEP 1055 (1084)
Q Consensus 989 ~~------dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~-~~dg~v~vw~~~~~ 1055 (1084)
.. .+.|..|++.....+.+. ........+ -++..++++|.+|.+|+++ ..++.|.+|++...
T Consensus 273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G-----~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG-----GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC-----TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred cccCCCccceEEEEEEecCCCceeeEeEeeEEEcCC-----CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 43 234777887654332222 111111111 3455688998668876665 57789999998554
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.23 E-value=8.4e-09 Score=111.62 Aligned_cols=160 Identities=12% Similarity=0.115 Sum_probs=103.4
Q ss_pred CCccEEEecCCCCEEEEEe--CCeEEEEEcCC-ceeE--EEE--cCCCCCeEEEEEcCCCCcEEEE-EeCCCeEEEEEcC
Q 001403 795 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTI--LTI--MPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNAR 866 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~-~~~~--~~~--~~~~~~i~~l~~s~~d~~~la~-g~~dg~i~iwd~~ 866 (1084)
..+.+++|+|||+++++++ .+.|.+|+... +... ... .........++|+| +++++.+ ...+++|.+|++.
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~ 223 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEec
Confidence 3467899999999999887 36788887653 3222 222 22346789999999 7776655 4467899999997
Q ss_pred Cceeeeeec-------------------ccccCEEEEEEcCCCCEEEEEeC-C-----CcEEEEeCCCCce-eeeeeeec
Q 001403 867 SSEVISKLE-------------------GHSKRVTGLVFSDALNILVSSGG-D-----AQIFVWDVDGWGI-QTCRSLQT 920 (1084)
Q Consensus 867 ~~~~~~~l~-------------------~h~~~V~~l~~spd~~~l~s~s~-d-----g~I~iwd~~~~~~-~~~~~~~~ 920 (1084)
.++...... .+......+.++|||++|+++.. + +.|..|++..... .....+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 303 (365)
T d1jofa_ 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP 303 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence 654221110 12234567899999999987643 2 2377777765322 22112221
Q ss_pred CCCCccCCCCceEEEEcc-CCCEEEEE--eCCeEEEEEcCC
Q 001403 921 PDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEE 958 (1084)
Q Consensus 921 ~~~~~~~~~~v~~~~~s~-dg~~la~~--~d~~i~vwd~~~ 958 (1084)
.... ......++|+| +|++|+++ .++.|.+|++..
T Consensus 304 ~~~~---G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 304 TPTS---GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp CSSC---CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred EEcC---CCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence 1111 12456799998 89998885 668899998753
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.6e-09 Score=121.13 Aligned_cols=375 Identities=9% Similarity=-0.015 Sum_probs=210.5
Q ss_pred EEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE---------CCCcEEEEE
Q 001403 528 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG---------DDHVIKIWD 598 (1084)
Q Consensus 528 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---------~dg~i~iwd 598 (1084)
.|.+++.++... .++.|.+||+.+++....+.........+....||||+++++... ..+.+.++|
T Consensus 23 ~W~~~~~~~~~~-----~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d 97 (465)
T d1xfda1 23 KWISDTEFIYRE-----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (465)
T ss_dssp CBSSSSCBCCCC-----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred EEeCCCcEEEEe-----CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence 467787765432 245699999998876555554443334677788999999988764 357889999
Q ss_pred CCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCc
Q 001403 599 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 678 (1084)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~ 678 (1084)
+.++..............+....|||||+.+|... ++.|.+.+..++...+........
T Consensus 98 ~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~-------------------- 156 (465)
T d1xfda1 98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEG-------------------- 156 (465)
T ss_dssp SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTT--------------------
T ss_pred ccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcc--------------------
Confidence 99887655443333333466789999999999876 467888887766544332211100
Q ss_pred eeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecC-CceEEeeccC
Q 001403 679 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPR 757 (1084)
Q Consensus 679 ~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~vw~~~~ 757 (1084)
.+..|-.| |-.+. .-...-.++.|||||++|+....| ..+..+.+..
T Consensus 157 -------------~i~nG~~d-----~vyee--------------e~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~ 204 (465)
T d1xfda1 157 -------------VIYNGLSD-----WLYEE--------------EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPT 204 (465)
T ss_dssp -------------TEEEEECC-----HHHHH--------------TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECC
T ss_pred -------------eeeccccc-----hhhhh--------------hhccccceEEECCCCCeEEEEEecccccceeeccc
Confidence 00000000 10000 000112356788888888776543 5555555432
Q ss_pred Ccc-----------CcCcccceecCCeeecCCCCCccccccCcC--CCCCCCccEEEecCCCCEEEEEeC-----CeEEE
Q 001403 758 NDL-----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTD--SNSQEAVPCFALSKNDAYLFSASG-----GVISL 819 (1084)
Q Consensus 758 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~l~~s~dg~~l~~~sd-----g~i~v 819 (1084)
... ...|.......+.++|+.++.......... ......+..+.|++++++++...+ ..+.+
T Consensus 205 ~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~ 284 (465)
T d1xfda1 205 YTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL 284 (465)
T ss_dssp CSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred ccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEE
Confidence 111 112222222345677776665322111110 012234677899999987776642 34888
Q ss_pred EEcCCceeEEEEcCCC-CC----eEEEEEcCCCCcEEE---EEeCCC--eEEEEEcC------CceeeeeecccccCEEE
Q 001403 820 YIVMTFKTILTIMPPS-PT----ATSLAFNPHDNNVIA---IGMDDS--TILIYNAR------SSEVISKLEGHSKRVTG 883 (1084)
Q Consensus 820 wd~~~~~~~~~~~~~~-~~----i~~l~~s~~d~~~la---~g~~dg--~i~iwd~~------~~~~~~~l~~h~~~V~~ 883 (1084)
+|..+++....+.... .. -....|++ +|+.++ ....+| .++...+. .++.+..+....-.|..
T Consensus 285 ~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~ 363 (465)
T d1xfda1 285 CDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTK 363 (465)
T ss_dssp EETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEE
T ss_pred EcCCCCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEE
Confidence 9999998766544221 11 23467899 665332 222333 34443332 23334445444445666
Q ss_pred E-EEcCCCCEEEE-EeCCC--cEEEEe--CCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeC----CeEEE
Q 001403 884 L-VFSDALNILVS-SGGDA--QIFVWD--VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE----THLAI 953 (1084)
Q Consensus 884 l-~~spd~~~l~s-~s~dg--~I~iwd--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d----~~i~v 953 (1084)
+ +|.++++.+.. +..++ .-.+|. +..+.. ..++....... ....++.|||+|++++.... -.+.+
T Consensus 364 i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~--~~~lt~~~~~~---~~~~~~~~S~~~~y~v~~~s~~~~P~~~~ 438 (465)
T d1xfda1 364 ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN--RQCLSCDLVEN---CTYFSASFSHSMDFFLLKCEGPGVPMVTV 438 (465)
T ss_dssp EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC--CBCSSTTSSSS---CCCCEEEECTTSSEEEEECCSSSSCCEEE
T ss_pred EEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc--ceeeccccCCC---CCEEEEEECCCCCEEEEEeecCCCCeEEE
Confidence 5 68888877654 43332 223444 443321 12222211111 24679999999999997422 25788
Q ss_pred EEcCCcceeeEee
Q 001403 954 YEAEELTCLKQWF 966 (1084)
Q Consensus 954 wd~~~~~~~~~~~ 966 (1084)
++..+++.+..+.
T Consensus 439 ~~~~~~~~~~~Le 451 (465)
T d1xfda1 439 HNTTDKKKMFDLE 451 (465)
T ss_dssp EETTTCCEEEEEE
T ss_pred EECCCCCEEEEEc
Confidence 8888888776643
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=3.4e-08 Score=101.98 Aligned_cols=238 Identities=11% Similarity=0.120 Sum_probs=143.7
Q ss_pred eEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC---EEEEEEccCCccccceeeeecccccEeEEEee
Q 001403 366 NFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH---IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS 442 (1084)
Q Consensus 366 ~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg---~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s 442 (1084)
.|.|-|........ +..+...+...+|||||++||...... .+.+.+..++... .+..+.+......|+
T Consensus 20 ~l~i~d~dG~~~~~----l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s 91 (269)
T d2hqsa1 20 ELRVSDYDGYNQFV----VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFS 91 (269)
T ss_dssp EEEEEETTSCSCEE----EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEEC
T ss_pred EEEEEcCCCCCcEE----EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee----EEeeeecccccceec
Confidence 56666765433322 222567788999999999999875543 4667777665432 355677888999999
Q ss_pred cCCCcEEEEEEeCCCc--EEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCe--EEEEECCCCCceEeec
Q 001403 443 APCKQISVITCGDDKT--IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK--IKAWLYDSLGARVDYD 518 (1084)
Q Consensus 443 ~d~~~l~l~s~~~d~~--i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~ 518 (1084)
|+|+.+.+ ....++. +..+......... ............+.+.. ...+++...+|. |...++..... ....
T Consensus 92 pdg~~i~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~ 167 (269)
T d2hqsa1 92 PDGSKLAF-ALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAP-QRIT 167 (269)
T ss_dssp TTSSEEEE-EECTTSSCEEEEEETTTCCEEE-CCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCC-EECC
T ss_pred CCCCeeeE-eeecCCccceeeccccccccee-eeecccccccccccccc-ccceecccccCCceEeeeecccccc-eeee
Confidence 99995322 2323333 2333333333222 22233333333443332 234555555665 44445544433 2334
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEEC---CCcEE
Q 001403 519 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIK 595 (1084)
Q Consensus 519 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~ 595 (1084)
..........++|+++.++...... +...+.+.+...+..... . .. .......|+|||+.|+..+. ...|+
T Consensus 168 ~~~~~~~~~~~spdg~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~-~~---~~~~~p~~SPDG~~i~f~s~~~~~~~l~ 241 (269)
T d2hqsa1 168 WEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQVL-S-ST---FLDETPSLAPNGTMVIYSSSQGMGSVLN 241 (269)
T ss_dssp CSSSEEEEEEECTTSSEEEEEEECS-SCEEEEEEETTTCCEEEC-C-CS---SSCEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred cccccccccccccccceeEEEeecC-CceeeeEeecccccceEe-e-cC---ccccceEECCCCCEEEEEEcCCCCcEEE
Confidence 4455777889999999999887543 455677777776654322 2 22 45667889999999987553 35688
Q ss_pred EEECCCCeEEEEEcCCCCCCCcceEEEec
Q 001403 596 IWDMNKVQLLTTIDAGGGLPENPRICFNK 624 (1084)
Q Consensus 596 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 624 (1084)
++++..+...+..... ..+...+|+|
T Consensus 242 ~~~~dg~~~~~lt~~~---g~~~~p~WSP 267 (269)
T d2hqsa1 242 LVSTDGRFKARLPATD---GQVKFPAWSP 267 (269)
T ss_dssp EEETTSCCEEECCCSS---SEEEEEEECC
T ss_pred EEECCCCCEEEEeCCC---CcEEeEEeCC
Confidence 9999877655433322 2366778888
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=2.4e-08 Score=103.17 Aligned_cols=240 Identities=15% Similarity=0.112 Sum_probs=149.7
Q ss_pred CCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC
Q 001403 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 399 (1084)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd 399 (1084)
.+......+.+..+...+...+|||||++||....+ .+. ..+.+.+........ +..+........||||
T Consensus 24 ~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~--~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~spd 93 (269)
T d2hqsa1 24 SDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFE--SGR----SALVIQTLANGAVRQ----VASFPRHNGAPAFSPD 93 (269)
T ss_dssp EETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECT--TSS----CEEEEEETTTCCEEE----EECCSSCEEEEEECTT
T ss_pred EcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEee--ccC----cceeeeecccCceeE----EeeeecccccceecCC
Confidence 344555566666667788999999999999985433 111 445566665544332 3447788899999999
Q ss_pred CCEEEEEeC-CCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCC--cEEEEECCCCceeeEeccC
Q 001403 400 GSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGH 476 (1084)
Q Consensus 400 g~~las~~~-dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~--~i~vwd~~~g~~~~~~~~h 476 (1084)
|+.++.... ++...++....... .......+........+++++.. .+++...++ .|.+.++..+.. ..+..+
T Consensus 94 g~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~ 169 (269)
T d2hqsa1 94 GSKLAFALSKTGSLNLYVMDLASG--QIRQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGGAP-QRITWE 169 (269)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTC--CEEECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSSCC-EECCCS
T ss_pred CCeeeEeeecCCccceeecccccc--cceeeeecccccccccccccccc-ceecccccCCceEeeeecccccc-eeeecc
Confidence 999998754 33333333222211 11122334445566678888875 344444455 455666665543 334445
Q ss_pred CCcEEEEeecccCCCcEEEEEec-CCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCC
Q 001403 477 GAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 555 (1084)
Q Consensus 477 ~~~v~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~ 555 (1084)
........+++ ++..++..+. .+...+|..+...................|||||+.|+..+.. .+...|+++++.
T Consensus 170 ~~~~~~~~~sp--dg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~-~~~~~l~~~~~d 246 (269)
T d2hqsa1 170 GSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ-GMGSVLNLVSTD 246 (269)
T ss_dssp SSEEEEEEECT--TSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE-TTEEEEEEEETT
T ss_pred ccccccccccc--ccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcC-CCCcEEEEEECC
Confidence 56666667754 6666666554 4555555555444444444555566788999999999877643 346779999998
Q ss_pred CceEeeeeeccccccCceEEEEEcC
Q 001403 556 EGAIKRTYQGLQLQHNSVSVVHFDT 580 (1084)
Q Consensus 556 ~~~~~~~~~~~~~~~~~v~~~~~s~ 580 (1084)
.+...+ +.... +.+...+|+|
T Consensus 247 g~~~~~-lt~~~---g~~~~p~WSP 267 (269)
T d2hqsa1 247 GRFKAR-LPATD---GQVKFPAWSP 267 (269)
T ss_dssp SCCEEE-CCCSS---SEEEEEEECC
T ss_pred CCCEEE-EeCCC---CcEEeEEeCC
Confidence 776544 44334 5778888998
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.03 E-value=3.5e-08 Score=103.73 Aligned_cols=243 Identities=10% Similarity=0.009 Sum_probs=157.5
Q ss_pred ccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCE
Q 001403 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 402 (1084)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 402 (1084)
|.+.+..+...+ .+..++++|||+++++...+ ++|..|+....... +......+.+++|+|||++
T Consensus 17 ~~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~---------~~I~~i~p~g~~~~-----~~~~~~~~~gla~~~dG~l 81 (302)
T d2p4oa1 17 PAKIITSFPVNT-FLENLASAPDGTIFVTNHEV---------GEIVSITPDGNQQI-----HATVEGKVSGLAFTSNGDL 81 (302)
T ss_dssp CEEEEEEECTTC-CEEEEEECTTSCEEEEETTT---------TEEEEECTTCCEEE-----EEECSSEEEEEEECTTSCE
T ss_pred cccEEEECCCCC-CcCCEEECCCCCEEEEeCCC---------CEEEEEeCCCCEEE-----EEcCCCCcceEEEcCCCCe
Confidence 445555565444 68899999999999986655 77777775543222 2335678999999999999
Q ss_pred EEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEec--------
Q 001403 403 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-------- 474 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~-------- 474 (1084)
+++...++.+.+|+......................+++.++++ ++++.+.++.+..+|..++.......
T Consensus 82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 159 (302)
T d2p4oa1 82 VATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSN 159 (302)
T ss_dssp EEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred EEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeEecCCccceee
Confidence 99998888888888765432221111123445688999999998 78888888899999988775332211
Q ss_pred --cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEe--ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEE
Q 001403 475 --GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 550 (1084)
Q Consensus 475 --~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 550 (1084)
........+.+ ++ +.++++.+..+.|..++......... ..........+++.++|++.++... ++.|.
T Consensus 160 ~~~~~~~~ngi~~--~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~----~~~V~ 232 (302)
T d2p4oa1 160 SESVFPAANGLKR--FG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI----YNSVV 232 (302)
T ss_dssp TTCCSCSEEEEEE--ET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT----TCCEE
T ss_pred ccCcccccccccc--cC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcC----CCcEE
Confidence 11123445554 32 35667777888888888776443221 1112223457999999997666543 45688
Q ss_pred EecCCCceEeeeeeccccccCceEEEEE---cCCCCEEEEEECC
Q 001403 551 EWNESEGAIKRTYQGLQLQHNSVSVVHF---DTAKDQILAAGDD 591 (1084)
Q Consensus 551 ~wd~~~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~l~~~~~d 591 (1084)
.++... +......... ......+++| ++|++.|++++..
T Consensus 233 ~i~p~G-~~~~~~~~~~-~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 233 RIAPDR-STTIIAQAEQ-GVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EECTTC-CEEEEECGGG-TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred EECCCC-CEEEEEecCC-CCCCceEEEEcCCCCCCCEEEEECCC
Confidence 888753 3322222211 1245789999 6788888776543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=4.5e-07 Score=100.79 Aligned_cols=261 Identities=9% Similarity=0.045 Sum_probs=146.3
Q ss_pred EEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeC---------CCE
Q 001403 341 DFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---------KHI 411 (1084)
Q Consensus 341 ~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~---------dg~ 411 (1084)
.|.+|+.++... . ++.+.+||+.++..........-....+....|||||++++.... .+.
T Consensus 23 ~W~~~~~~~~~~-~---------~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~ 92 (465)
T d1xfda1 23 KWISDTEFIYRE-Q---------KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (465)
T ss_dssp CBSSSSCBCCCC-S---------SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred EEeCCCcEEEEe-C---------CCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeecccc
Confidence 477888776541 1 277889999876543221111112346778899999999988743 567
Q ss_pred EEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEec-cCCCcE----------
Q 001403 412 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPV---------- 480 (1084)
Q Consensus 412 v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~-~h~~~v---------- 480 (1084)
+.++|+.++.... +.........+....|||||+. +|-.. ++.|.+.+..++..++... +..+.|
T Consensus 93 ~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~--iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vye 168 (465)
T d1xfda1 93 YVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQ--LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE 168 (465)
T ss_dssp EEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTC--EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred EEEEEccCCceee-ccCccCCccccceeeeccCCce--EEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhh
Confidence 8999999886422 2122233455677899999995 44333 6778888887776554332 222222
Q ss_pred -------EEEeecccCCCcEEEEEecC-CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEe
Q 001403 481 -------YSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 552 (1084)
Q Consensus 481 -------~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~w 552 (1084)
.++-| ++||+.|+....| ..|..+.+..... .....+..+.+..-|.. .....+.++
T Consensus 169 ee~~~~~~a~~W--SPDgk~iaf~~~D~s~V~~~~~~~~~~-----~~~p~~~~~~Yp~~G~~--------np~~~l~v~ 233 (465)
T d1xfda1 169 EEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTG-----SIYPTVKPYHYPKAGSE--------NPSISLHVI 233 (465)
T ss_dssp HTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSS-----SSSCCCEEEECCBTTSC--------CCEEEEEEE
T ss_pred hhhccccceEEE--CCCCCeEEEEEecccccceeecccccc-----cccceeeeeeccccCCC--------CCceeEEEE
Confidence 23445 5577888876543 3344443321100 00111222332222211 112347788
Q ss_pred cCCCceEeeeeec---cccccCceEEEEEcCCCCEEEEEE-CC---CcEEEEECCCCeEEEEEcCCCCC--C-CcceEEE
Q 001403 553 NESEGAIKRTYQG---LQLQHNSVSVVHFDTAKDQILAAG-DD---HVIKIWDMNKVQLLTTIDAGGGL--P-ENPRICF 622 (1084)
Q Consensus 553 d~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~-~d---g~i~iwd~~~~~~~~~~~~~~~~--~-~v~~v~~ 622 (1084)
|+.++........ ......-+..+.|+|+++.++... .+ ..+.++|..+|+....+...... . .-....|
T Consensus 234 d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~ 313 (465)
T d1xfda1 234 GLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVF 313 (465)
T ss_dssp ESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEE
T ss_pred ecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeE
Confidence 8876654322211 111113467889999987666533 22 35888999999876655432210 0 1234678
Q ss_pred ecCCCEEE
Q 001403 623 NKNGTLLA 630 (1084)
Q Consensus 623 s~~~~~l~ 630 (1084)
++||+.++
T Consensus 314 ~~dg~~~~ 321 (465)
T d1xfda1 314 SKDGRKFF 321 (465)
T ss_dssp CTTSCSEE
T ss_pred ccCCCeeE
Confidence 89887543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.97 E-value=8.6e-08 Score=98.02 Aligned_cols=238 Identities=10% Similarity=0.051 Sum_probs=153.8
Q ss_pred CCCCccEEEecCCCCEEEEEe--CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee
Q 001403 793 SQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 870 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~ 870 (1084)
+......++++++|...++.. .+.+..++...................+++++ +++++++....+.+++++-.++..
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~ 90 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQT 90 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeecccee
Confidence 445668999999999766654 46676666543332222222224567889999 788888777777777776555554
Q ss_pred eeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCC
Q 001403 871 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET 949 (1084)
Q Consensus 871 ~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~ 949 (1084)
+....+ .....++++.++++++++-.....+..++........ ....+.. ....++++++|+++++ ..++
T Consensus 91 ~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~----~~~~~~~----~p~~i~~~~~g~~~v~~~~~~ 161 (260)
T d1rwia_ 91 VLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV----LPFTGLN----DPDGVAVDNSGNVYVTDTDNN 161 (260)
T ss_dssp ECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE----CCCCSCC----SCCEEEECTTCCEEEEEGGGT
T ss_pred eeeeee-eeecccccccccceeEeeccccccccccccccceeee----eeecccC----CcceeeecCCCCEeeeccccc
Confidence 444332 3457899999999988877677777777776633111 1111111 3568999999998777 4667
Q ss_pred eEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEE
Q 001403 950 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1029 (1084)
Q Consensus 950 ~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1029 (1084)
.|..++........ .....-.....|++.++|.++++....+.|..++....... .+.. ..--.|..++
T Consensus 162 ~i~~~d~~~~~~~~-~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-~~~~---------~~~~~P~~i~ 230 (260)
T d1rwia_ 162 RVVKLEAESNNQVV-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLPF---------TGLNTPLAVA 230 (260)
T ss_dssp EEEEECTTTCCEEE-CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-ECCC---------CSCCCEEEEE
T ss_pred cccccccccceeee-eeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-EEcc---------CCCCCeEEEE
Confidence 89999977544332 23334556789999999998888877888888876654322 1110 1112467789
Q ss_pred ECCCCCCEEEEEeCCCcEEEEcC
Q 001403 1030 AHPLKPTQFAVGLTNGEVYVIEP 1052 (1084)
Q Consensus 1030 ~~p~d~~~l~~~~~dg~v~vw~~ 1052 (1084)
+++ +|+.+++-..++.|+.++.
T Consensus 231 ~d~-~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 231 VDS-DRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp ECT-TCCEEEEEGGGTEEEEECC
T ss_pred EeC-CCCEEEEECCCCEEEEEeC
Confidence 998 4777777666666665544
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.89 E-value=1.6e-07 Score=98.49 Aligned_cols=235 Identities=10% Similarity=0.042 Sum_probs=149.3
Q ss_pred CCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee-ee
Q 001403 795 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-IS 872 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~-~~ 872 (1084)
..+..++++|||+++++.. +++|..|+... + ...+......+.+++|++ +++++++...++.+..|+...... ..
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 104 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEeccccccee
Confidence 3577899999999888776 68888888553 3 333444567899999999 889999998888888888764321 11
Q ss_pred ee--cccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeec--CCCCccCCCCceEEEEccCCCEEEE--E
Q 001403 873 KL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT--PDGVMTLAPSETHIQFHKDQTRFLL--V 946 (1084)
Q Consensus 873 ~l--~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~dg~~la~--~ 946 (1084)
.+ .........+++.++++++++.+.++.+..++...+.......-.. .............+.++ +..+.. .
T Consensus 105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~ 182 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT 182 (302)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET
T ss_pred eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC
Confidence 12 1234568899999999999998889999999888765322111100 00111111134455554 444444 4
Q ss_pred eCCeEEEEEcCCcceeeEe-ecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceee
Q 001403 947 HETHLAIYEAEELTCLKQW-FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1025 (1084)
Q Consensus 947 ~d~~i~vwd~~~~~~~~~~-~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1025 (1084)
..+.|+.++.......... ...+......++|.+||+++++...++.|..++.... ....... . .....+
T Consensus 183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~-~~~~~~~----~----~~~~~p 253 (302)
T d2p4oa1 183 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS-TTIIAQA----E----QGVIGS 253 (302)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC-EEEEECG----G----GTCTTE
T ss_pred CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC-EEEEEec----C----CCCCCc
Confidence 6678888887654332211 1112334567999999998888888899999977643 3222210 0 111346
Q ss_pred eEEEE---CCCCCCEEEEEeCC
Q 001403 1026 HAIAA---HPLKPTQFAVGLTN 1044 (1084)
Q Consensus 1026 ~~~~~---~p~d~~~l~~~~~d 1044 (1084)
.+++| .| |++.|.+++..
T Consensus 254 t~vafg~~~~-D~~~Lyvtt~~ 274 (302)
T d2p4oa1 254 TAVAFGQTEG-DCTAIYVVTNG 274 (302)
T ss_dssp EEEEECCSTT-TTTEEEEEECT
T ss_pred eEEEEcCCCC-CCCEEEEECCC
Confidence 67889 44 56777666544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.87 E-value=1.2e-06 Score=90.32 Aligned_cols=239 Identities=10% Similarity=0.090 Sum_probs=161.3
Q ss_pred CccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCC------CCCeEEEEEcCCCCcEEEEE-eCCCeEEEEEcCC
Q 001403 796 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIG-MDDSTILIYNARS 867 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~la~g-~~dg~i~iwd~~~ 867 (1084)
....++++++|+.+++-. ++.|++||.+ |+.+..+... ......+++.++.+.++++. +.++.|.+++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence 457899999999776644 5889999965 6776666421 12345667666345555543 345678888754
Q ss_pred ceeeeeec-ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE
Q 001403 868 SEVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 946 (1084)
Q Consensus 868 ~~~~~~l~-~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 946 (1084)
++....+. ........+++.++|.++++....+.+.+++..... .. .+... .+. .....+++.++|..+++.
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~-~~--~~g~~-~~~---~~~~~i~~d~~g~i~v~d 174 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-LH--KFGCS-KHL---EFPNGVVVNDKQEIFISD 174 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EE--EEECT-TTC---SSEEEEEECSSSEEEEEE
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCce-ee--ccccc-ccc---cccceeeeccceeEEeee
Confidence 56555553 345667899999999999888888888888876522 11 11111 111 257789999999887774
Q ss_pred -eCCeEEEEEcCCcceeeEee-cCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcCCCceeEEeccccccCCCCcccce
Q 001403 947 -HETHLAIYEAEELTCLKQWF-PISSVPISQATFSCDCRMVFTSFV-DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHV 1023 (1084)
Q Consensus 947 -~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~l~fs~dg~~l~t~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 1023 (1084)
..+.|++|+.. |+.+..+- .++......|++.++|+.+++-.. ++.|.+++ .+|+++..+.... ..-
T Consensus 175 ~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~--------~~~ 244 (279)
T d1q7fa_ 175 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKV--------KHA 244 (279)
T ss_dssp GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESS--------CCS
T ss_pred ccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCC--------CCC
Confidence 66789999975 66665542 234556789999999997776543 45799998 4688776665211 112
Q ss_pred eeeEEEECCCCCCEEEEEeCCCcEEEEcCCCC
Q 001403 1024 YPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1055 (1084)
Q Consensus 1024 ~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~ 1055 (1084)
.+..++.+| ||. |++++.++.|++|+...-
T Consensus 245 ~p~~vav~~-dG~-l~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 245 QCFDVALMD-DGS-VVLASKDYRLYIYRYVQL 274 (279)
T ss_dssp CEEEEEEET-TTE-EEEEETTTEEEEEECSCC
T ss_pred CEeEEEEeC-CCc-EEEEeCCCeEEEEEeeee
Confidence 466788888 464 566778999999987543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.86 E-value=4.3e-07 Score=95.24 Aligned_cols=239 Identities=13% Similarity=0.137 Sum_probs=154.1
Q ss_pred CccEEEecCCCCEEEEEe--------CCeEEEEEcCCceeEEEEcCC----CCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001403 796 AVPCFALSKNDAYLFSAS--------GGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIY 863 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~s--------dg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~la~g~~dg~i~iw 863 (1084)
....++|.++|+++++.. +++|..||..+++........ ......++|.+ ++..|+++...+.|..+
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEE
Confidence 456789999999887643 367888998887655443322 23467899999 78777778777789999
Q ss_pred EcCCceeeeeecccc----cCEEEEEEcCCCCEEEEEeC---------------CCcEEEEeCCCCceeeeeeeecCCCC
Q 001403 864 NARSSEVISKLEGHS----KRVTGLVFSDALNILVSSGG---------------DAQIFVWDVDGWGIQTCRSLQTPDGV 924 (1084)
Q Consensus 864 d~~~~~~~~~l~~h~----~~V~~l~~spd~~~l~s~s~---------------dg~I~iwd~~~~~~~~~~~~~~~~~~ 924 (1084)
+...+.......... ...+.+++.++|.+.++-.. +|.|..++.+. +.. .......
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~--~~~~~~~-- 172 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMI--QVDTAFQ-- 172 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEE--EEEEEES--
T ss_pred eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-cee--EeeCCcc--
Confidence 987654322111111 13577999999998887532 23344444332 211 1111111
Q ss_pred ccCCCCceEEEEccCCC----EEEEE--eCCeEEEEEcCCcceee------EeecCCCCCEEEEEEccCCCEEEEEeCCC
Q 001403 925 MTLAPSETHIQFHKDQT----RFLLV--HETHLAIYEAEELTCLK------QWFPISSVPISQATFSCDCRMVFTSFVDG 992 (1084)
Q Consensus 925 ~~~~~~v~~~~~s~dg~----~la~~--~d~~i~vwd~~~~~~~~------~~~~~h~~~v~~l~fs~dg~~l~t~~~dg 992 (1084)
....++|+|++. .|.++ ..+.|..|++.....+. .+...+......+++..+|++.++....+
T Consensus 173 -----~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g 247 (314)
T d1pjxa_ 173 -----FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp -----SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred -----eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCC
Confidence 245789999875 45443 56788888875332221 11111233457899999999888887889
Q ss_pred cEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCC-EEEEEeCCCcEEEEcCCCCC
Q 001403 993 TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT-QFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 993 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~-~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
.|.+||.+++.....+.... -.+.+++|.| |++ ++++.+.+|.|...++...+
T Consensus 248 ~I~~~dp~~g~~~~~i~~p~----------~~~t~~afg~-d~~~lyVt~~~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 248 HIEVFGPDGGQPKMRIRCPF----------EKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EEEEECTTCBSCSEEEECSS----------SCEEEEEECT-TSSEEEEEETTTTEEEEEECSSCB
T ss_pred EEEEEeCCCCEEEEEEECCC----------CCEEEEEEeC-CCCEEEEEECCCCcEEEEECCCCC
Confidence 99999999888776554111 2345788998 565 55667778888888886666
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.86 E-value=1.3e-06 Score=90.16 Aligned_cols=244 Identities=12% Similarity=0.103 Sum_probs=163.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeee---ecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI---DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l---~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
....++++|+|+.+++-..++.|++||.+ |+.+...... .+....-..+++.++....+++..+.++.|.+++ ..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QY 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TT
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccc-cc
Confidence 46789999999988887778889999976 3333321111 0112234556766665543444455567888888 46
Q ss_pred CceeeEec-cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee--cCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 467 GSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 467 g~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
|.....+. ........+++ .+++.++++....+.+.+++.+. +....+ ..+......+++.++++.+++...
T Consensus 102 g~~~~~~~~~~~~~p~~~av--d~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~-- 176 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTV--DNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR-- 176 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEE--CTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGG--
T ss_pred ccceeecCCCcccccceecc--ccCCcEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeecc--
Confidence 77666663 33455677777 45667777777778788887543 333333 334456788999999987776543
Q ss_pred CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEE
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 622 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 622 (1084)
.+.|++||.. |+.+..+.... .......+++.++|+.+++-. .++.|.+|+. +|+.+..+...........+++
T Consensus 177 --~~~V~~~d~~-G~~~~~~g~~g-~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav 251 (279)
T d1q7fa_ 177 --AHCVKVFNYE-GQYLRQIGGEG-ITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVAL 251 (279)
T ss_dssp --GTEEEEEETT-CCEEEEESCTT-TSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEE
T ss_pred --ccceeeeecC-Cceeeeecccc-cccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEE
Confidence 5679999964 56666653211 124578899999999777644 3457999985 6888877765444445678999
Q ss_pred ecCCCEEEEEECCCeEEEEEcCCC
Q 001403 623 NKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 623 s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
.|||.+ +++..++.|++|.....
T Consensus 252 ~~dG~l-~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 252 MDDGSV-VLASKDYRLYIYRYVQL 274 (279)
T ss_dssp ETTTEE-EEEETTTEEEEEECSCC
T ss_pred eCCCcE-EEEeCCCeEEEEEeeee
Confidence 999975 45567899999998754
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.85 E-value=2.7e-07 Score=94.17 Aligned_cols=239 Identities=10% Similarity=-0.007 Sum_probs=150.4
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC
Q 001403 389 VSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 467 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~-~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g 467 (1084)
.....++++++|+..++. +..+.+..++..+.... .....+. .....++++++|. ++++....+.+++++-.++
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~--~~~~~~~-~~p~gvav~~~g~--i~v~d~~~~~i~~~~~~~~ 88 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT--VLPFNGL-YQPQGLAVDGAGT--VYVTDFNNRVVTLAAGSNN 88 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEE--ECCCCSC-CSCCCEEECTTCC--EEEEETTTEEEEECTTCSC
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE--EeccCCc-cCceEEEEcCCCC--EEEeeeeeceeeeeeeccc
Confidence 456899999999976665 45566777665543221 1122222 2356889999998 6777776667777765555
Q ss_pred ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCe
Q 001403 468 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 547 (1084)
Q Consensus 468 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 547 (1084)
..+....+ ......+++. +++.++++-..+..+..++...................++++++|+.+++... ..
T Consensus 89 ~~~~~~~~-~~~p~~iavd--~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~----~~ 161 (260)
T d1rwia_ 89 QTVLPFDG-LNYPEGLAVD--TQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NN 161 (260)
T ss_dssp CEECCCCS-CCSEEEEEEC--TTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGG----GT
T ss_pred eeeeeeee-eeeccccccc--ccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccc----cc
Confidence 54433332 2456788884 46677777666777777766554433322222334568999999997766543 55
Q ss_pred eEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC
Q 001403 548 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 627 (1084)
Q Consensus 548 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 627 (1084)
.|..+|.............. .....+++.++++.+++....+.|..++...... ..+. .........++++++|.
T Consensus 162 ~i~~~d~~~~~~~~~~~~~~---~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~-~~~~~~P~~i~~d~~g~ 236 (260)
T d1rwia_ 162 RVVKLEAESNNQVVLPFTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLP-FTGLNTPLAVAVDSDRT 236 (260)
T ss_dssp EEEEECTTTCCEEECCCSSC---CSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECC-CCSCCCEEEEEECTTCC
T ss_pred cccccccccceeeeeecccc---CCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEc-cCCCCCeEEEEEeCCCC
Confidence 69999977654433222222 4578899999998888877788888888765432 2222 12223457899999998
Q ss_pred EEEEEECCCeEEEEEcC
Q 001403 628 LLAVIANENRIKILETP 644 (1084)
Q Consensus 628 ~l~~~~~dg~i~iwd~~ 644 (1084)
++++-..+++|+.++..
T Consensus 237 l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 237 VYVADRGNDRVVKLTSL 253 (260)
T ss_dssp EEEEEGGGTEEEEECCC
T ss_pred EEEEECCCCEEEEEeCC
Confidence 77776666767655443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.79 E-value=2.2e-06 Score=89.74 Aligned_cols=252 Identities=12% Similarity=0.030 Sum_probs=155.1
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceee-eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA-LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL 414 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~-~~~~h~~~V~~v~fspdg~~las~~~dg~v~i 414 (1084)
....++|.|||++.++.......+ ...++|..||..+........ ...........++|+++|+.|+++...+.|..
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~--~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~ 96 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNG--KPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETT--EECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred CCeEeEEeCCCCEEEEECcccccc--ccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEE
Confidence 567889999999887632110001 113678888887654432211 01111234678999999998888887777999
Q ss_pred EEccCCccccceeeeeccc-ccEeEEEeecCCCcEEEEEEeC---------------CCcEEEEECCCCceeeEeccCCC
Q 001403 415 YAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---------------DKTIKVWDAVTGSRTYSFEGHGA 478 (1084)
Q Consensus 415 wd~~~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~l~s~~~---------------d~~i~vwd~~~g~~~~~~~~h~~ 478 (1084)
.+.+++..........+.. ...+.+++.++|. +.++... +|.|..++. .|+..... ..-.
T Consensus 97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~-~~~~ 172 (314)
T d1pjxa_ 97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVD-TAFQ 172 (314)
T ss_dssp EETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEE-EEES
T ss_pred EeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEEEee-cCceeEee-CCcc
Confidence 9987754221110111111 1357899999998 5565321 234444443 34433222 2233
Q ss_pred cEEEEeecccCCC---cEEEEEecCCeEEEEECCCCCceE------eecC-CCCeEEEEEEcCCCCEEEEEeeCCCCCee
Q 001403 479 PVYSLCPHAKENI---HFIFSISVDGKIKAWLYDSLGARV------DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESF 548 (1084)
Q Consensus 479 ~v~~~~~~~~~~~---~~l~s~s~dg~i~iwd~~~~~~~~------~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 548 (1084)
.-+.++|++.+++ .++++-+..+.|..|++....... .+.. .......+++..+|+..++... .+.
T Consensus 173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~----~g~ 248 (314)
T d1pjxa_ 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG----SSH 248 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET----TTE
T ss_pred eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC----CCE
Confidence 3467888765543 244555677889998876544322 1111 1224568999999998776543 567
Q ss_pred EEEecCCCceEeeeeeccccccCceEEEEEcCCCCEE-EEEECCCcEEEEECC
Q 001403 549 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMN 600 (1084)
Q Consensus 549 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~ 600 (1084)
|.+||..+++.+..+.... ....+++|.|+++.| ++.+.+|.|...++.
T Consensus 249 I~~~dp~~g~~~~~i~~p~---~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 249 IEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEEEeCCCCEEEEEEECCC---CCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 9999999888777666554 568899999998755 445677888877764
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.76 E-value=2.8e-06 Score=89.29 Aligned_cols=232 Identities=9% Similarity=0.083 Sum_probs=148.3
Q ss_pred CccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCC----CeEEEEEcCCcee
Q 001403 796 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSEV 870 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d----g~i~iwd~~~~~~ 870 (1084)
.+..++|.++|++.++-. ++.|..|+..+++....+.........+++++ +|+++++...+ +.+...+..++..
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCcee
Confidence 446899999998655543 68899999888776666665667789999999 88887765432 3455556555444
Q ss_pred eeeecc--cccCEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCE
Q 001403 871 ISKLEG--HSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 942 (1084)
Q Consensus 871 ~~~l~~--h~~~V~~l~~spd~~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 942 (1084)
...... -......+++.++|++.++.... +.+..++.+.+.... ...... ....++|+||++.
T Consensus 120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~--~~~~~~-------~pnGia~s~dg~~ 190 (319)
T d2dg1a1 120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQNIS-------VANGIALSTDEKV 190 (319)
T ss_dssp EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEEES-------SEEEEEECTTSSE
T ss_pred eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEE--Eeeccc-------eeeeeeeccccce
Confidence 333321 12357789999999987764322 235555544432111 111111 3467999999997
Q ss_pred EEEE--eCCeEEEEEcCCc-ceeeE------eecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccc
Q 001403 943 FLLV--HETHLAIYEAEEL-TCLKQ------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1013 (1084)
Q Consensus 943 la~~--~d~~i~vwd~~~~-~~~~~------~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~ 1013 (1084)
|.++ ..+.|..|++... ..... ...........+++.++|++.++....+.|.+++- .|+.+.++.....
T Consensus 191 lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~ 269 (319)
T d2dg1a1 191 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR 269 (319)
T ss_dssp EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG
T ss_pred EEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCc
Confidence 7664 5688999987532 21111 01111233568999999998888888999999995 7888887763322
Q ss_pred cCCCCcccceeeeEEEECCCCCCEEEEEeC
Q 001403 1014 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1043 (1084)
Q Consensus 1014 ~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~ 1043 (1084)
.+ .....+.+++|.|. ++.+++...
T Consensus 270 ~~----~~~~~~~~~~~~~~-~~~~~~t~~ 294 (319)
T d2dg1a1 270 DE----GHMLRSTHPQFIPG-TNQLIICSN 294 (319)
T ss_dssp GG----TCSCBCCEEEECTT-SCEEEEEEE
T ss_pred CC----CcCceeeeEEEeCC-CCEEEEEcC
Confidence 11 12244568889884 555555443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.67 E-value=1.7e-05 Score=83.08 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=67.7
Q ss_pred CCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEEC----CCcEEE
Q 001403 521 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD----DHVIKI 596 (1084)
Q Consensus 521 ~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~i 596 (1084)
......++|.++|++.++-. ..+.|+.|+..+++....+.... .....++++++|+.+++... .+.+..
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~----~~g~I~ri~p~g~~~~~~~~~~~---~~p~gla~~~dG~l~va~~~~~~~~~~i~~ 111 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDV----FEGNIFKINPETKEIKRPFVSHK---ANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 111 (319)
T ss_dssp CCCEEEEEECTTSCEEEEET----TTCEEEEECTTTCCEEEEEECSS---SSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred CcCcEeCEECCCCCEEEEEC----CCCEEEEEECCCCeEEEEEeCCC---CCeeEEEECCCCCEEEEecCCCccceeEEE
Confidence 33557899999998555533 25679999988876665554444 56789999999988777543 234555
Q ss_pred EECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEE
Q 001403 597 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 631 (1084)
Q Consensus 597 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 631 (1084)
.+..++...............+.+++.++|++.++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vt 146 (319)
T d2dg1a1 112 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFT 146 (319)
T ss_dssp ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEE
T ss_pred EcCCCceeeeeccCCCcccCCcceeEEeccceeec
Confidence 56655555544443333334566778888765544
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.35 E-value=6.7e-06 Score=84.65 Aligned_cols=199 Identities=13% Similarity=0.115 Sum_probs=120.6
Q ss_pred EecCC--CCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeC-C-----CeEEEEEcCCceeee
Q 001403 801 ALSKN--DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-D-----STILIYNARSSEVIS 872 (1084)
Q Consensus 801 ~~s~d--g~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~-d-----g~i~iwd~~~~~~~~ 872 (1084)
..||| |+.++..++|.|.+.|+.+++.. .+..+.+.+...+||| ||+.||.... + ..|.+++..+++...
T Consensus 5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTR-KIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEETTEEEEEETTTCCEE-EEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEeCCcEEEEECCCCCEE-EEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 46899 99999999999999999987764 5565677889999999 8888886542 2 258888888876543
Q ss_pred eec------ccccCEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCceeee--------------eeeec--CCC-
Q 001403 873 KLE------GHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTC--------------RSLQT--PDG- 923 (1084)
Q Consensus 873 ~l~------~h~~~V~~l~~spd~~~l~s~s~d------g~I~iwd~~~~~~~~~--------------~~~~~--~~~- 923 (1084)
... .........+|+|||+.|+..... ..+...+...+..... ..+.. ...
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELP 162 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCT
T ss_pred eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccc
Confidence 221 122345678999999999875332 2244444443321110 00000 000
Q ss_pred C------------------------ccCCCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcceeeEeecCCCCCEEEEE
Q 001403 924 V------------------------MTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQAT 977 (1084)
Q Consensus 924 ~------------------------~~~~~~v~~~~~s~dg~~la~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~ 977 (1084)
. ...........++++..+.... ....|.++|+.+++... +....... ...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~~~~~--~~~ 239 (281)
T d1k32a2 163 HWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRK-HTSFTDYY--PRH 239 (281)
T ss_dssp TSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEE-CCCCCSSC--EEE
T ss_pred eeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEeCCCCceEE-eecCCCcc--ccc
Confidence 0 0000122333444443222222 23468888887665443 22222223 346
Q ss_pred EccCCCEEEEEeCCCcEEEEEcCCCcee
Q 001403 978 FSCDCRMVFTSFVDGTLSIHEASNLEVQ 1005 (1084)
Q Consensus 978 fs~dg~~l~t~~~dg~i~vwd~~~~~~~ 1005 (1084)
|||||+.|+.. .++.|.++|+.+++..
T Consensus 240 ~SpDG~~I~f~-~~~~l~~~d~~~g~~~ 266 (281)
T d1k32a2 240 LNTDGRRILFS-KGGSIYIFNPDTEKIE 266 (281)
T ss_dssp EEESSSCEEEE-ETTEEEEECTTTCCEE
T ss_pred CcCCCCEEEEE-eCCEEEEEECCCCCEE
Confidence 89999998864 5789999999998765
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.30 E-value=0.00027 Score=72.44 Aligned_cols=216 Identities=9% Similarity=0.021 Sum_probs=142.0
Q ss_pred EEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee
Q 001403 438 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 517 (1084)
Q Consensus 438 ~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 517 (1084)
...|.+.+.. +..+--..+.|..||.++++.. .+. ....+.++++. +++.++++ +.+ .+..+|..+++.....
T Consensus 22 gp~wd~~~~~-l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~--~dg~l~va-~~~-gl~~~d~~tg~~~~l~ 94 (295)
T d2ghsa1 22 GPTFDPASGT-AWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKI--SDSKQLIA-SDD-GLFLRDTATGVLTLHA 94 (295)
T ss_dssp EEEEETTTTE-EEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEE--ETTEEEEE-ETT-EEEEEETTTCCEEEEE
T ss_pred CCeEECCCCE-EEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEe--cCCCEEEE-EeC-ccEEeecccceeeEEe
Confidence 4568876554 3444446788999999888653 232 34567788774 45555554 444 5778998887654433
Q ss_pred cC----CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEE-ECCC
Q 001403 518 DA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDH 592 (1084)
Q Consensus 518 ~~----~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg 592 (1084)
.. ....+..+.+.|+|++.++........+.-.+|.+..++........ .....++|+++++.++.+ +..+
T Consensus 95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~----~~~Ng~~~s~d~~~l~~~dt~~~ 170 (295)
T d2ghsa1 95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI----SIPNSICFSPDGTTGYFVDTKVN 170 (295)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE----SSEEEEEECTTSCEEEEEETTTC
T ss_pred eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc----CCcceeeecCCCceEEEeecccc
Confidence 22 22368889999999987765433222333455666667665555443 356789999999877654 5678
Q ss_pred cEEEEECCC------CeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEc
Q 001403 593 VIKIWDMNK------VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVN 665 (1084)
Q Consensus 593 ~i~iwd~~~------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 665 (1084)
.|+.+++.. ++........+.......+++..+|++.++....+.|..|+. .++.+..+......+++++|.
T Consensus 171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FG 248 (295)
T d2ghsa1 171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI 248 (295)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEe
Confidence 898888642 122222222222233568899999998888888899999994 677888887776778888875
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.29 E-value=8.9e-06 Score=83.67 Aligned_cols=239 Identities=12% Similarity=0.081 Sum_probs=129.2
Q ss_pred CCCC--cchhhhcccccCCCccCCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccc
Q 001403 300 YSPK--SSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSM 377 (1084)
Q Consensus 300 fsP~--~s~~~~~f~~~~~~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~ 377 (1084)
.||+ +..+ .|...+..|+.+++....+.|..+.+.+...+|||||++||...+..... ....|.+++..++..
T Consensus 6 ~sPdi~G~~v--~f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~---~~~~i~~~~~~~g~~ 80 (281)
T d1k32a2 6 LNPDIHGDRI--IFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSL---NTADLYFYNGENGEI 80 (281)
T ss_dssp EEEEEETTEE--EEEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTC---CEEEEEEEETTTTEE
T ss_pred cCCCCCCCEE--EEEeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCC---CceEEEEEEecCCce
Confidence 3566 5544 34444456667777777788888888899999999999999865441111 114567777766543
Q ss_pred cceee---eecCCCCCeEEEEEcCCCCEEEEEeCC------CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcE
Q 001403 378 LFKTA---LVRDPGVSVNRVVWSPDGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQI 448 (1084)
Q Consensus 378 ~~~~~---~~~~h~~~V~~v~fspdg~~las~~~d------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l 448 (1084)
..... ............+|+|||+.|+..... ..+...+..++... ..+....... +.+++..
T Consensus 81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~- 152 (281)
T d1k32a2 81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV------PLNLGPATHI-LFADGRR- 152 (281)
T ss_dssp EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE------ECCSCSCSEE-EEETTEE-
T ss_pred EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE------EecCCcccee-eecCCCe-
Confidence 32110 011223456788999999999986432 23556666554321 1223333333 4445543
Q ss_pred EEEEEeCCC-----------cEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCC--eEEEEECCCCCceE
Q 001403 449 SVITCGDDK-----------TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARV 515 (1084)
Q Consensus 449 ~l~s~~~d~-----------~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~ 515 (1084)
.++....+. ...++....+...... .+........+ .++ ..+.....++ .|.++|++......
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~ 228 (281)
T d1k32a2 153 VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVI--VGH-RIYFITDIDGFGQIYSTDLDGKDLRK 228 (281)
T ss_dssp EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEE--ETT-EEEEEECTTSSCEEEEEETTSCSCEE
T ss_pred EEEeeccccceeeeeccCCcceeeeeccccceeecc-CCccccceeee--ecc-ccceecccccccceEEEeCCCCceEE
Confidence 333332221 1112222222222222 22222333333 222 2333333433 46667777665544
Q ss_pred eecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee
Q 001403 516 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 516 ~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 562 (1084)
........ ...|+|||+.|+... ++.|+++|+.+++....
T Consensus 229 lt~~~~~~--~~~~SpDG~~I~f~~-----~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 229 HTSFTDYY--PRHLNTDGRRILFSK-----GGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp CCCCCSSC--EEEEEESSSCEEEEE-----TTEEEEECTTTCCEEEC
T ss_pred eecCCCcc--cccCcCCCCEEEEEe-----CCEEEEEECCCCCEEEe
Confidence 33322223 346899999988754 34599999998876544
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.25 E-value=0.0016 Score=66.50 Aligned_cols=220 Identities=8% Similarity=-0.000 Sum_probs=141.7
Q ss_pred EEEecCCCCEEEEEe--CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec-
Q 001403 799 CFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE- 875 (1084)
Q Consensus 799 ~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~- 875 (1084)
+..|++....|...+ .+.|..||..+++.. .+. ....+.++++.+ ++.++++ +.+ .+.++|..+++......
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~~ 96 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAEL 96 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence 456777555555555 688999999988654 332 345688999998 7777764 555 58999999887543221
Q ss_pred -c--cccCEEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE--
Q 001403 876 -G--HSKRVTGLVFSDALNILVSSGGD----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-- 946 (1084)
Q Consensus 876 -~--h~~~V~~l~~spd~~~l~s~s~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-- 946 (1084)
. ....++.+.+.|+|++.++.... +.-.+|.+..++... ...... ....++|+++++.+..+
T Consensus 97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~--~~~~~~-------~~Ng~~~s~d~~~l~~~dt 167 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTK--LFADIS-------IPNSICFSPDGTTGYFVDT 167 (295)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEE--EEEEES-------SEEEEEECTTSCEEEEEET
T ss_pred ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEE--EeeccC-------CcceeeecCCCceEEEeec
Confidence 1 12357889999999987765432 344667766654322 121111 34689999999987764
Q ss_pred eCCeEEEEEcCCc--c----e-eeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCc
Q 001403 947 HETHLAIYEAEEL--T----C-LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTS 1019 (1084)
Q Consensus 947 ~d~~i~vwd~~~~--~----~-~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1019 (1084)
..+.|..|++... . . ......+..+....+++..+|.+.++.-..+.|..|| ..|+.+..+... ..
T Consensus 168 ~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP----~~-- 240 (295)
T d2ghsa1 168 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVP----GK-- 240 (295)
T ss_dssp TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECS----CS--
T ss_pred ccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCC----CC--
Confidence 4577888887421 1 1 1111222355678899999999888777788999999 568888777621 11
Q ss_pred ccceeeeEEEECCCCCCEE-EEEeC
Q 001403 1020 CLHVYPHAIAAHPLKPTQF-AVGLT 1043 (1084)
Q Consensus 1020 ~~~v~~~~~~~~p~d~~~l-~~~~~ 1043 (1084)
.+.+++|-..|.+.| ++...
T Consensus 241 ----~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 241 ----QTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp ----BEEEEEEESTTSCEEEEEEBC
T ss_pred ----ceEEEEEeCCCCCEEEEEECC
Confidence 345677854344444 44443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.08 E-value=0.00039 Score=74.82 Aligned_cols=294 Identities=9% Similarity=-0.049 Sum_probs=152.9
Q ss_pred CceEEEEcCCCceeeeecccccC--ccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC-CEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIV 412 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~s--g~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d-g~v 412 (1084)
.+...+...||+.++.|.++... +.......+.+||..+............|.......++.+||++++.|+.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence 44456667799999998876332 111112357899999876554333334454455667899999999998655 579
Q ss_pred EEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC------CcEEEEECCCCceeeEec---------cCC
Q 001403 413 QLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVTGSRTYSFE---------GHG 477 (1084)
Q Consensus 413 ~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d------~~i~vwd~~~g~~~~~~~---------~h~ 477 (1084)
.+||..+..-.. ...+... ..-..++..+||+ +++.|+.+ ..+.+||..+.+-...-. .+.
T Consensus 101 ~~yd~~~~~w~~-~~~~~~~-r~~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 176 (387)
T d1k3ia3 101 SLYDSSSDSWIP-GPDMQVA-RGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ 176 (387)
T ss_dssp EEEEGGGTEEEE-CCCCSSC-CSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT
T ss_pred eEecCccCcccc-ccccccc-ccccceeeecCCc--eeeeccccccccccceeeeecCCCCceeecCCCccccccccccc
Confidence 999998764321 1111111 1223567778998 67776642 368999988765321100 000
Q ss_pred CcE----EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecC---------CCCeEEEEEEcCCCCEEEEEeeCCC
Q 001403 478 APV----YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---------PGLGCTRMAYSANGRRLFSCGTSKE 544 (1084)
Q Consensus 478 ~~v----~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------~~~~i~~~~~s~d~~~l~~~~~~~~ 544 (1084)
..+ ....+. ..++..++.+..++.+.+++..+......... ....-..+....+++.++.++....
T Consensus 177 ~~~~~~~~~~~~~-~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~ 255 (387)
T d1k3ia3 177 GLYRSDNHAWLFG-WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY 255 (387)
T ss_dssp GGGTTTCSCCEEE-CGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred ceeeccceeEEEE-eCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCC
Confidence 000 000110 22455666666666666666655432221100 0011122223346777777664321
Q ss_pred C----CeeEEE---ecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC-----------CcEEEEECCCCeEEE
Q 001403 545 G----ESFLVE---WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----------HVIKIWDMNKVQLLT 606 (1084)
Q Consensus 545 ~----~~~i~~---wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~ 606 (1084)
. .....+ ++...................-.+....++++.+++|+.+ .++.+||..+.+...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~ 335 (387)
T d1k3ia3 256 QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK 335 (387)
T ss_dssp SSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE
T ss_pred CCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEE
Confidence 1 111222 2222211111111100001122345556889988887743 147889998876544
Q ss_pred EEcCCCCCCCcceEEEecCCCEEEEEEC
Q 001403 607 TIDAGGGLPENPRICFNKNGTLLAVIAN 634 (1084)
Q Consensus 607 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 634 (1084)
.-........-....+.+||+.++.|+.
T Consensus 336 ~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 336 QNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp CCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 3222211111123446789999999874
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.92 E-value=0.014 Score=57.83 Aligned_cols=240 Identities=11% Similarity=-0.005 Sum_probs=147.8
Q ss_pred CEEEEEeCCCEEEEEEccCCccc--cceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001403 401 SLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 478 (1084)
Q Consensus 401 ~~las~~~dg~v~iwd~~~~~~~--~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~ 478 (1084)
.+|+.+.. +.|+-.+++..... .....+..+...+..++|.+.++. +..+-..++.|...++..+.....+..-..
T Consensus 2 ~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~-iywsd~~~~~I~~~~l~g~~~~~v~~~~~~ 79 (263)
T d1npea_ 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (263)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred CEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCE-EEEEECCCCeEEEEEcccCCcEEEEEeccc
Confidence 34554443 35777777654321 122234455566888999988775 344445678899889876655444443345
Q ss_pred cEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCce
Q 001403 479 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 558 (1084)
Q Consensus 479 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~ 558 (1084)
.+..+++.... +.+.++-...+.|.+.+++.................+++.|...+++...... +...|..-++....
T Consensus 80 ~p~~iAvD~~~-~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~-~~~~I~r~~~dG~~ 157 (263)
T d1npea_ 80 SPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGTN 157 (263)
T ss_dssp CEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSCC
T ss_pred cccEEEEeccC-CeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCC-CCcEEEEecCCCCC
Confidence 67888885432 23445556678999999987665544444445788999999888887654321 23345555555433
Q ss_pred EeeeeeccccccCceEEEEEcCCCCEEEEE-ECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEE-ECCC
Q 001403 559 IKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANEN 636 (1084)
Q Consensus 559 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg 636 (1084)
........ ......+++.+.++.|+.+ ...+.|...++........+.... ....+++. +..|... ...+
T Consensus 158 ~~~i~~~~---~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~---~P~~lav~--~~~lYwtd~~~~ 229 (263)
T d1npea_ 158 RRILAQDN---LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY--GKNLYYTDWKTN 229 (263)
T ss_dssp CEEEECTT---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE--TTEEEEEETTTT
T ss_pred ceeeeeec---ccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC---CcEEEEEE--CCEEEEEECCCC
Confidence 32222222 2456889999888888666 467889999997655544443322 23467765 3445444 4568
Q ss_pred eEEEEEcCCCCeeeec
Q 001403 637 RIKILETPESNSVDAA 652 (1084)
Q Consensus 637 ~i~iwd~~~~~~~~~~ 652 (1084)
.|...|..+++.....
T Consensus 230 ~I~~~~~~~g~~~~~~ 245 (263)
T d1npea_ 230 SVIAMDLAISKEMDTF 245 (263)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCccceEE
Confidence 8888888887665544
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.89 E-value=0.0018 Score=66.69 Aligned_cols=165 Identities=9% Similarity=0.056 Sum_probs=99.7
Q ss_pred cEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCC-------------cEEEEEecCCeEEEEECCCCCc
Q 001403 447 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-------------HFIFSISVDGKIKAWLYDSLGA 513 (1084)
Q Consensus 447 ~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~-------------~~l~s~s~dg~i~iwd~~~~~~ 513 (1084)
+..+.||+..|.|+|+-+.+++.+..+.-....-. --|-.+++. .+|.. ..+.+..|
T Consensus 13 yy~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~-~G~G~~~es~~il~~~~~~~t~~~l~~--~g~~~~~~------- 82 (459)
T d1fwxa2 13 YYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSA-TGWGQTNESVRIHERTMSERTKKFLAA--NGKRIHDN------- 82 (459)
T ss_dssp EEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTT-TCTTTBHHHHHHHHTTCC----------------CCC-------
T ss_pred EEEEeeCCccceEEEEecCCcceEEEeeeecCCCC-cccCcchhHHHHhhcccChhhhhhhhc--cCcccccC-------
Confidence 34678899999999999999999888753211000 000000000 01110 00111111
Q ss_pred eEeecCCCCeEEEEEEc---CCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEc--CCCCEEEEE
Q 001403 514 RVDYDAPGLGCTRMAYS---ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD--TAKDQILAA 588 (1084)
Q Consensus 514 ~~~~~~~~~~i~~~~~s---~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~ 588 (1084)
+..+. ..+++. +||+++++... .+.+|.+.|+.+.+..+...... ...+..++.. |+..+++++
T Consensus 83 -----GD~HH-P~~S~TdGtyDGrylFVNDk---an~RVAvIdl~~fkt~kIi~iPn--~~~~HG~r~~~~p~T~YV~~~ 151 (459)
T d1fwxa2 83 -----GDLHH-VHMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCN 151 (459)
T ss_dssp -----CCBCC-EEEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSS--CCSEEEEEECCSSBCSEEEEE
T ss_pred -----CCcCC-CcccccCCccceeEEEEEcC---CCceEEEEECcceeeeEEEecCC--CCCCceeecccCCCeEEEEcc
Confidence 01111 144554 48999998763 47789999999998876555433 2345666654 556678777
Q ss_pred ECCC------------------cEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC
Q 001403 589 GDDH------------------VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 635 (1084)
Q Consensus 589 ~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 635 (1084)
+++. .+.++|..+.+....+...+. ...+.++++|+++++.+.+
T Consensus 152 ~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~---ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 152 GEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp ECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESC
T ss_pred CccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeCCC---hhccccCCCCCEEEEEecc
Confidence 7532 367789999888888776544 5678999999988887653
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.86 E-value=0.014 Score=56.59 Aligned_cols=226 Identities=13% Similarity=0.099 Sum_probs=147.4
Q ss_pred cEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-eeeeeecc
Q 001403 798 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEG 876 (1084)
Q Consensus 798 ~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~-~~~~~l~~ 876 (1084)
.+.-.+|..+.||.-+..++.+||+++.+.+..+.- ...|.--.|-. .+.|+..+ +..|+-|+++.. ++.+.+.-
T Consensus 66 dsAIMhP~~~IiALrag~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT-~taVYHW~~~g~s~P~k~fdR 141 (327)
T d1utca2 66 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 141 (327)
T ss_dssp SEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCCCEEEESS--SSEEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred hhhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEc-CCCcEEEEecC--CCEEEEEc-CCceEEEcccCCCCchhhhhh
Confidence 355678999999988888999999999998888773 34677777874 45677666 557999999542 45666665
Q ss_pred cc----cCEEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCC-----
Q 001403 877 HS----KRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ----- 940 (1084)
Q Consensus 877 h~----~~V~~l~~spd~~~l~s~s~-------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg----- 940 (1084)
|. ..|..-..++|.++++..|- .|.+.+|.++.+. -+..+||.. .-..+.-+|
T Consensus 142 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~ 210 (327)
T d1utca2 142 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEES 210 (327)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE------EEEECCSEE-----EEEEECCTTCSSCE
T ss_pred cccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc------Cccccceee-----eeEEEEcCCCCCCc
Confidence 54 46888888999999886542 3678899998743 344556543 112221222
Q ss_pred CEEEEE----eCCeEEEEEcCCcc---ee-----eEe-ecC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 001403 941 TRFLLV----HETHLAIYEAEELT---CL-----KQW-FPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1005 (1084)
Q Consensus 941 ~~la~~----~d~~i~vwd~~~~~---~~-----~~~-~~~--h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~ 1005 (1084)
.+++.+ ..+++.|.++.+.. .. ..+ ++. -..---++..|+.-..++.-+.-|.|.+||+.+|.++
T Consensus 211 ~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i 290 (327)
T d1utca2 211 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 290 (327)
T ss_dssp EEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEE
Confidence 223323 22578898886522 10 111 111 1334456777887778888889999999999999998
Q ss_pred EEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEE
Q 001403 1006 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1049 (1084)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~v 1049 (1084)
.+-. -+.+.|+.. .... +..-+++...+|+|.-
T Consensus 291 ~~nR--------Is~~~iF~~-a~~~--~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 291 YMNR--------ISGETIFVT-APHE--ATAGIIGVNRKGQVLS 323 (327)
T ss_dssp EEEE--------CCSSCEEEE-EEET--TTTEEEEEETTSEEEE
T ss_pred EEee--------cCCCceEEe-ccCC--CCceEEEECCCCeEEE
Confidence 6554 123445532 2222 2455666668888764
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.84 E-value=0.0066 Score=67.94 Aligned_cols=193 Identities=14% Similarity=0.136 Sum_probs=119.9
Q ss_pred CeEEEEEcCCceeEEEEcCCC------------------------------CCe-EEEEEcCCCCcEEEEEeC-------
Q 001403 815 GVISLYIVMTFKTILTIMPPS------------------------------PTA-TSLAFNPHDNNVIAIGMD------- 856 (1084)
Q Consensus 815 g~i~vwd~~~~~~~~~~~~~~------------------------------~~i-~~l~~s~~d~~~la~g~~------- 856 (1084)
|.|.-+|..||+.+-.+..-. ..+ ..+++.+ ...++..+..
T Consensus 178 G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~-~~~l~y~~tgn~~~~~~ 256 (560)
T d1kv9a2 178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNR 256 (560)
T ss_dssp CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCH
T ss_pred ceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCccccccccc-ccCeeeecCCCCccccc
Confidence 679999999999988764211 011 2356666 4555554332
Q ss_pred ------------CCeEEEEEcCCceeeeeecccccC---------EEEEEEcCCC---CEEEEEeCCCcEEEEeCCCCce
Q 001403 857 ------------DSTILIYNARSSEVISKLEGHSKR---------VTGLVFSDAL---NILVSSGGDAQIFVWDVDGWGI 912 (1084)
Q Consensus 857 ------------dg~i~iwd~~~~~~~~~l~~h~~~---------V~~l~~spd~---~~l~s~s~dg~I~iwd~~~~~~ 912 (1084)
...|.-.|+++|+.+..++..... ..-+.+..++ +.++.++.+|.+.++|-.+++.
T Consensus 257 ~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~ 336 (560)
T d1kv9a2 257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (560)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred ccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcc
Confidence 235777799999987666532211 1112222344 3677788999999999999885
Q ss_pred eeeeeeecC---------CC--------C---------ccCC--CCceEEEEccCCCEEEE-Ee----------------
Q 001403 913 QTCRSLQTP---------DG--------V---------MTLA--PSETHIQFHKDQTRFLL-VH---------------- 947 (1084)
Q Consensus 913 ~~~~~~~~~---------~~--------~---------~~~~--~~v~~~~~s~dg~~la~-~~---------------- 947 (1084)
......... .+ . .... ..-...+++|+..++.+ ..
T Consensus 337 i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~ 416 (560)
T d1kv9a2 337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR 416 (560)
T ss_dssp EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred cccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccc
Confidence 432211100 00 0 0000 01135678888887776 22
Q ss_pred --------------------CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEE
Q 001403 948 --------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1007 (1084)
Q Consensus 948 --------------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~ 1007 (1084)
.+.|.-||+.+|+.+.+...+. +..+-.++..|.++++++.||.++.+|..+|+.+.+
T Consensus 417 ~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~--~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~ 494 (560)
T d1kv9a2 417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT--HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ 494 (560)
T ss_dssp SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCC--CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEE
Confidence 1467889999999887755432 222223344567888999999999999999999988
Q ss_pred ecc
Q 001403 1008 ILS 1010 (1084)
Q Consensus 1008 ~~~ 1010 (1084)
+..
T Consensus 495 ~~l 497 (560)
T d1kv9a2 495 FEA 497 (560)
T ss_dssp EEC
T ss_pred EEC
Confidence 773
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.82 E-value=0.005 Score=69.02 Aligned_cols=193 Identities=12% Similarity=0.028 Sum_probs=112.0
Q ss_pred CCCcEEEEECC-CCceeeEeccCCC----------cE-EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCC
Q 001403 455 DDKTIKVWDAV-TGSRTYSFEGHGA----------PV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL 522 (1084)
Q Consensus 455 ~d~~i~vwd~~-~g~~~~~~~~h~~----------~v-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 522 (1084)
.++.|.-.|.. +|+.+-++..... .+ ..+++. +..++.++.||.+.-.|.++++..........
T Consensus 71 ~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~----~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~ 146 (571)
T d2ad6a1 71 FPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG----AGQIVKKQANGHLLALDAKTGKINWEVEVCDP 146 (571)
T ss_dssp TTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEEECCCG
T ss_pred CCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee----CCeEEEEeCCCcEEeeehhhhhhhcccccccc
Confidence 35677777764 6887766531100 00 122331 23678888999998889999887665432211
Q ss_pred ----eEEEEEEcCCCCEEEEEee-CCCCCeeEEEecCCCceEeeeeecccc-----------------------------
Q 001403 523 ----GCTRMAYSANGRRLFSCGT-SKEGESFLVEWNESEGAIKRTYQGLQL----------------------------- 568 (1084)
Q Consensus 523 ----~i~~~~~s~d~~~l~~~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~----------------------------- 568 (1084)
.+++--.-.++..++..+. +....+.|+-+|+.+|+.+-.+.....
T Consensus 147 ~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (571)
T d2ad6a1 147 KVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEG 226 (571)
T ss_dssp GGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSST
T ss_pred ccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCC
Confidence 1111111123433333221 111356799999999999876643210
Q ss_pred -----ccCce-EEEEEcCCCCEEEEEEC----------------CCcEEEEECCCCeEEEEEcCCCCC-------CCcce
Q 001403 569 -----QHNSV-SVVHFDTAKDQILAAGD----------------DHVIKIWDMNKVQLLTTIDAGGGL-------PENPR 619 (1084)
Q Consensus 569 -----~~~~v-~~~~~s~~~~~l~~~~~----------------dg~i~iwd~~~~~~~~~~~~~~~~-------~~v~~ 619 (1084)
....+ ...++.++...++.+.. ...+.-.|.++|+.+..++...+. .....
T Consensus 227 ~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l 306 (571)
T d2ad6a1 227 DAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL 306 (571)
T ss_dssp TGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE
T ss_pred cccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccccccccce
Confidence 00111 23466677777766543 345778899999999877643221 11112
Q ss_pred EEEecCCC---EEEEEECCCeEEEEEcCCCCeeee
Q 001403 620 ICFNKNGT---LLAVIANENRIKILETPESNSVDA 651 (1084)
Q Consensus 620 v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~ 651 (1084)
.....+++ .++.++.+|.+.++|..+++.+..
T Consensus 307 ~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~ 341 (571)
T d2ad6a1 307 TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA 341 (571)
T ss_dssp EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred eeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence 22333454 467788899999999999987754
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=0.023 Score=56.35 Aligned_cols=239 Identities=9% Similarity=-0.040 Sum_probs=142.4
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc----eeeEeccCC
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS----RTYSFEGHG 477 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~----~~~~~~~h~ 477 (1084)
+|+.+... .|+-.++++.+.. .+......+.+++|.+.++. +..+-..++.|.--++.... ....+....
T Consensus 3 fLl~s~~~-~I~~~~l~~~~~~----~~~~~~~~~~~id~d~~~~~-lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~ 76 (266)
T d1ijqa1 3 YLFFTNRH-EVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (266)
T ss_dssp EEEEECBS-SEEEEETTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECCC-eEEEEECCCCcce----eeeCCCCceEEEEEEeCCCE-EEEEECCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence 34444433 3888888775432 23334556789999988874 23344456677766664321 112222233
Q ss_pred CcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc
Q 001403 478 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~ 557 (1084)
..+..+++.+.. +.+.++-...+.|.+.+++.................+++.|...+|+..... ....|...++...
T Consensus 77 ~~p~glAvD~~~-~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~--~~~~I~r~~~dGs 153 (266)
T d1ijqa1 77 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 153 (266)
T ss_dssp SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceEEEeecc-ceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccC--CCcceeEeccCCC
Confidence 446677775433 3455555667889999998776666566555678899999977777765432 1345777776544
Q ss_pred eEeeeeeccccccCceEEEEEcCCCCEEEEE-ECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCC
Q 001403 558 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 636 (1084)
Q Consensus 558 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 636 (1084)
.........- .....+++.+.++.|+.+ ...+.|...++....................+++. ++..+.+-..++
T Consensus 154 ~~~~l~~~~~---~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~ 229 (266)
T d1ijqa1 154 DIYSLVTENI---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (266)
T ss_dssp CEEEEECSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred ceeccccccc---ceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCC
Confidence 3333332222 457889999988877776 45688998898765544444433333334466666 233344334567
Q ss_pred eEEEEEcCCCCeeeecc
Q 001403 637 RIKILETPESNSVDAAG 653 (1084)
Q Consensus 637 ~i~iwd~~~~~~~~~~~ 653 (1084)
.|...+..++.....+.
T Consensus 230 ~I~~~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 230 AIFSANRLTGSDVNLLA 246 (266)
T ss_dssp EEEEEETTTCCCCEEEE
T ss_pred eEEEEECCCCcceEEEE
Confidence 88888877775554444
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.75 E-value=0.01 Score=64.06 Aligned_cols=256 Identities=13% Similarity=0.088 Sum_probs=142.5
Q ss_pred CCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC---
Q 001403 333 GSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK--- 409 (1084)
Q Consensus 333 h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d--- 409 (1084)
+.-.+...++||||+++|.+..+ .|.-. ..+++.|+.++...-.. +.+ .....++|++|++.|.....+
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~--~G~e~--~~l~v~Dl~tg~~~~~~--i~~--~~~~~~~W~~D~~~~~Y~~~~~~~ 194 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSA--SGSDW--VTIKFMKVDGAKELPDV--LER--VKFSCMAWTHDGKGMFYNAYPQQD 194 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEE--TTCSC--EEEEEEETTTTEEEEEE--EEE--ECSCCEEECTTSSEEEEEECCCCS
T ss_pred ccceecceEecCCCCEEEEEecc--ccCch--heeEEeccCcceecccc--ccc--ccccceEEcCCCCEEEEEEecccc
Confidence 33345567899999999996544 23222 78999999998754322 111 123568999999988765432
Q ss_pred -------------CEEEEEEccCCccccceeeeecc--cccEeEEEeecCCCcEEEEEEe-CCCcEEEE--ECCCCc---
Q 001403 410 -------------HIVQLYAYHGGSDARQQLEIDAH--VGNVNDLAFSAPCKQISVITCG-DDKTIKVW--DAVTGS--- 468 (1084)
Q Consensus 410 -------------g~v~iwd~~~~~~~~~~~~l~~h--~~~V~~l~~s~d~~~l~l~s~~-~d~~i~vw--d~~~g~--- 468 (1084)
..|..|.+.+...-... .+... ...+..+..++|++.+++.+.. .+....+| |+....
T Consensus 195 ~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~-v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~ 273 (430)
T d1qfma1 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDIL-CAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (430)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEE-EECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred CcccccccccCCcceEEEEECCCCcccccc-ccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccc
Confidence 25788888776432211 23332 2346677889999953333332 23344444 433221
Q ss_pred -----eeeEeccCCCcEEEEeecccCCCcEEEEEe---cCCeEEEEECCCCCc---eEeecCCCCeEEEEEEcCCCCEEE
Q 001403 469 -----RTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLF 537 (1084)
Q Consensus 469 -----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~~l~ 537 (1084)
....+......+..+.. . ++.+++... .++.|...++..... ...+..+...+..-.++..+.+|+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lv 350 (430)
T d1qfma1 274 TGILKWVKLIDNFEGEYDYVTN--E-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV 350 (430)
T ss_dssp CSSCCCEEEECSSSSCEEEEEE--E-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred ccccceeEeecccccceEEEec--C-CceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEE
Confidence 11122222233332221 1 222333332 235666667765443 122333444454444555556666
Q ss_pred EEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE----CCCcEEEEECCCCeE
Q 001403 538 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL 604 (1084)
Q Consensus 538 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~ 604 (1084)
.... .++...|.+++..++.......... +.+..+...++...+.... .-.+++-+|+.+++.
T Consensus 351 l~~~-~~~~~~l~v~~~~~~~~~~~~~~~~---~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 351 LCYL-HDVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEEE-ETTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEEE-cCCEeEEEEEECCCCcEEEecCCCC---ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 5543 2457789999999887765544433 5566666666666554432 347788899988753
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.69 E-value=0.031 Score=55.16 Aligned_cols=225 Identities=12% Similarity=0.054 Sum_probs=140.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEe-CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 385 RDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 385 ~~h~~~V~~v~fspdg~~las~~-~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
..+...+..++|.+..+.|.... .++.|...+++++.... .+......+..+++..-++. +.++-...+.|.+.+
T Consensus 32 ~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~ 107 (263)
T d1npea_ 32 HIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAK 107 (263)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEE
T ss_pred ccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEEe
Confidence 33445688899998888777664 56778888887654322 23233356889999876664 334455577999999
Q ss_pred CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCC--eEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEee
Q 001403 464 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 541 (1084)
+........+...-.....+++.|.. |.++.+-...+ .|..-+++...........-.....+++.+.++.|+.+..
T Consensus 108 ~dg~~~~~l~~~~l~~p~~l~vdp~~-g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~ 186 (263)
T d1npea_ 108 MDGTQRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA 186 (263)
T ss_dssp TTSCSCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred cCCceEEEEecccccCCcEEEEeccc-CcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC
Confidence 87655433333334667888886543 33333433222 3444456554444434344456789999999988877642
Q ss_pred CCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceE
Q 001403 542 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 620 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 620 (1084)
+.+.|...|+........+.+.. ...++++. +..|+... ..+.|...|..+++.+..+..... .....+
T Consensus 187 ---~~~~I~~~~~~g~~~~~v~~~~~----~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~-~~~~gi 256 (263)
T d1npea_ 187 ---GTHRAECLNPAQPGRRKVLEGLQ----YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGI 256 (263)
T ss_dssp ---TTTEEEEEETTEEEEEEEEECCC----SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCE
T ss_pred ---CCCEEEEEECCCCCeEEEECCCC----CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCC-CCcceE
Confidence 35678888887655544444433 34567664 45565554 678899999999988877653332 234455
Q ss_pred EEec
Q 001403 621 CFNK 624 (1084)
Q Consensus 621 ~~s~ 624 (1084)
+..+
T Consensus 257 ~v~~ 260 (263)
T d1npea_ 257 TIAL 260 (263)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 5544
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.68 E-value=0.0085 Score=67.26 Aligned_cols=379 Identities=11% Similarity=0.059 Sum_probs=190.9
Q ss_pred EEEEeCCCcEEEEECCCCceeeEeccCC----------CcE-EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec
Q 001403 450 VITCGDDKTIKVWDAVTGSRTYSFEGHG----------APV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 518 (1084)
Q Consensus 450 l~s~~~d~~i~vwd~~~g~~~~~~~~h~----------~~v-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 518 (1084)
++.++.++.|.-+|.++|+.+-++.... ..+ ..+.+. ...++.++.|+.+.-.|..+++......
T Consensus 80 vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~v~~~t~~g~l~alda~tG~~~W~~~ 155 (573)
T d1kb0a2 80 MYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW----KGKVYVGAWDGRLIALDAATGKEVWHQN 155 (573)
T ss_dssp EEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE----CCcEEEEecccceeeeccccccceeccc
Confidence 5566678888899999999887664211 011 112221 1357778888888888888888766543
Q ss_pred CCCCe--EEEEEEcC--CCCEEEEEeeC--CCCCeeEEEecCCCceEeeeeeccccc-----------------------
Q 001403 519 APGLG--CTRMAYSA--NGRRLFSCGTS--KEGESFLVEWNESEGAIKRTYQGLQLQ----------------------- 569 (1084)
Q Consensus 519 ~~~~~--i~~~~~s~--d~~~l~~~~~~--~~~~~~i~~wd~~~~~~~~~~~~~~~~----------------------- 569 (1084)
..... -..+.-.| -+..+++++.. ....+.|+.+|..+|+.+-.+......
T Consensus 156 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~ 235 (573)
T d1kb0a2 156 TFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKW 235 (573)
T ss_dssp TTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCH
T ss_pred CccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCce
Confidence 22110 00000011 13334443321 123567999999999998776432100
Q ss_pred -----cCce-EEEEEcCCCCEEEEEEC-------------------CCcEEEEECCCCeEEEEEcCCCCC-------CCc
Q 001403 570 -----HNSV-SVVHFDTAKDQILAAGD-------------------DHVIKIWDMNKVQLLTTIDAGGGL-------PEN 617 (1084)
Q Consensus 570 -----~~~v-~~~~~s~~~~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~-------~~v 617 (1084)
...+ ...++.++...++.+.. ...|.-.|.++++.....+...+. ...
T Consensus 236 ~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~ 315 (573)
T d1kb0a2 236 WEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPM 315 (573)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCC
T ss_pred eecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCccccccccccee
Confidence 0111 23456677666665331 124667788888887766542211 011
Q ss_pred ceEEEecCC---CEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccc
Q 001403 618 PRICFNKNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 694 (1084)
Q Consensus 618 ~~v~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 694 (1084)
.......++ ..++.++.+|.+.++|..+++.+........... ..+.+... .+.
T Consensus 316 ~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~-~~~~~~~~----------------------~~~ 372 (573)
T d1kb0a2 316 ILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA-SGYDKHGK----------------------PIG 372 (573)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE-EEECTTSC----------------------EEE
T ss_pred eecceecCCCceeeeeeccccceeEEeccccccccccccccccccc-cccccccc----------------------eee
Confidence 112222333 3567778899999999999988765543211110 00110000 000
Q ss_pred eecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCee
Q 001403 695 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 774 (1084)
Q Consensus 695 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 774 (1084)
.... ..........+.......-...+++|+...+++...+....++.....+.....
T Consensus 373 -----------~~~~-~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~---------- 430 (573)
T d1kb0a2 373 -----------IAAA-RDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAG---------- 430 (573)
T ss_dssp -----------CGGG-GCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCC----------
T ss_pred -----------eeec-cccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCC----------
Confidence 0000 000000001111001111124578898888888777765554433221110000
Q ss_pred ecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEE
Q 001403 775 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG 854 (1084)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g 854 (1084)
.+..... ........ +.+.-.....-|.+.-||+.+++.+.......... .-.++- .+.+|++|
T Consensus 431 ----~~~~~~g-------~~~~~~~~---~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~-gg~lst-agglVF~G 494 (573)
T d1kb0a2 431 ----PGKPQSG-------TGWNTAKF---FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWN-GGTLTT-AGNVVFQG 494 (573)
T ss_dssp ----TTSTTGG-------GTCCCCEE---ECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCC-CCEEEE-TTTEEEEE
T ss_pred ----CCccccc-------cccccccc---cccCCCCCCCcccEEEeCCCCCceEeeecCCCCCC-CceEEE-cCCEEEEE
Confidence 0000000 00000000 00000000012678899999999887765432211 111222 45688889
Q ss_pred eCCCeEEEEEcCCceeeeeecc----cccCEEEEEEcCCCC-EEEEE
Q 001403 855 MDDSTILIYNARSSEVISKLEG----HSKRVTGLVFSDALN-ILVSS 896 (1084)
Q Consensus 855 ~~dg~i~iwd~~~~~~~~~l~~----h~~~V~~l~~spd~~-~l~s~ 896 (1084)
+.||.++.+|..+|+.+.+++- +..+ +.|..||+ |++..
T Consensus 495 ~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~GkQYv~v~ 538 (573)
T d1kb0a2 495 TADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGRQYVSVA 538 (573)
T ss_dssp CTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEEEEEEE
T ss_pred CCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCEEEEEEE
Confidence 9999999999999999987763 2223 45556786 44433
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.65 E-value=0.01 Score=66.23 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=52.3
Q ss_pred CeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccC-EEEEEEcCCCC-E
Q 001403 815 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALN-I 892 (1084)
Q Consensus 815 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~spd~~-~ 892 (1084)
|.+.-||+.+++.+........ ...-.++- .+.++++|+.||.++-+|..+|+.+.+++-.... -.-+.+..||+ +
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~-~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy 515 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTH-WNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY 515 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cceEEEeCCCCeEeeeccCCCC-CCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 4688899999998877653221 11112222 3457888999999999999999999887632211 11145556785 5
Q ss_pred EEEEe
Q 001403 893 LVSSG 897 (1084)
Q Consensus 893 l~s~s 897 (1084)
|+..+
T Consensus 516 v~v~a 520 (560)
T d1kv9a2 516 VAIMA 520 (560)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55443
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.63 E-value=0.0022 Score=72.34 Aligned_cols=77 Identities=10% Similarity=0.081 Sum_probs=51.3
Q ss_pred CeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc----cccCEEEEEEcCCC
Q 001403 815 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG----HSKRVTGLVFSDAL 890 (1084)
Q Consensus 815 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~----h~~~V~~l~~spd~ 890 (1084)
|.+.-||+.+++.+....... ....-.++. .+.++++|+.||.++-+|..+|+.+.+++- +..+ +.|..||
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~-~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P---~tY~~dG 527 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERF-AVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYP---MTYTHKG 527 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETT
T ss_pred ceEEEEeCCCCceecccCCCC-CCccceeEe-cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCC---eEEEECC
Confidence 678889999998876654222 111112233 456788899999999999999999988753 2333 4455677
Q ss_pred C-EEEEE
Q 001403 891 N-ILVSS 896 (1084)
Q Consensus 891 ~-~l~s~ 896 (1084)
+ |++..
T Consensus 528 kQYvav~ 534 (596)
T d1w6sa_ 528 TQYVAIY 534 (596)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5 45543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.57 E-value=0.0021 Score=66.19 Aligned_cols=191 Identities=10% Similarity=0.054 Sum_probs=123.0
Q ss_pred CCCCEEEEEe--CCeEEEEEcCCceeEEEEcC-CCCCeEEEEEcCC-CCcEEEEEeCCC------------------eEE
Q 001403 804 KNDAYLFSAS--GGVISLYIVMTFKTILTIMP-PSPTATSLAFNPH-DNNVIAIGMDDS------------------TIL 861 (1084)
Q Consensus 804 ~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~-d~~~la~g~~dg------------------~i~ 861 (1084)
+||+++.+.+ +++|.+.|+.+.+..+.... ....+..+...++ ...+++.++++. .+.
T Consensus 97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence 4899999998 58899999999998665443 3345666666441 445777666532 367
Q ss_pred EEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCc---------------EEEEeC-------------------
Q 001403 862 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ---------------IFVWDV------------------- 907 (1084)
Q Consensus 862 iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~---------------I~iwd~------------------- 907 (1084)
++|..+.+...+..- .+....+++++||+++++.+.+.. +.+++.
T Consensus 177 ~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~ 255 (459)
T d1fwxa2 177 AVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 255 (459)
T ss_dssp EEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence 789988887766552 234667999999999998875421 333332
Q ss_pred ----CCCc-eeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcceee----------EeecCCC
Q 001403 908 ----DGWG-IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLK----------QWFPISS 970 (1084)
Q Consensus 908 ----~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~i~vwd~~~~~~~~----------~~~~~h~ 970 (1084)
.... ......+... .....+.++|||++++++ -+.++.|+|++.-.... .-.....
T Consensus 256 VVD~~~~~~~~v~~yIPVp-------KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elg 328 (459)
T d1fwxa2 256 VVDGRKEASSLFTRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG 328 (459)
T ss_dssp EEECSGG--CSSEEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCC
T ss_pred eecccccCCcceeEEEecC-------CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccC
Confidence 2100 0001112221 234578999999999995 57899999986432210 0011123
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001403 971 VPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 971 ~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
-.-...+|..+|.-..|-.-|..|.-|++...
T Consensus 329 lgPLht~fd~~g~aytslfids~v~kw~~~~~ 360 (459)
T d1fwxa2 329 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA 360 (459)
T ss_dssp SCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred cCccccccCCCceEEEEeeccceEEEEecchh
Confidence 44567789998866666668999999998643
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.54 E-value=0.0062 Score=64.87 Aligned_cols=123 Identities=11% Similarity=0.179 Sum_probs=77.8
Q ss_pred EEEEEEcCCCCEEEEEeeCCC-------CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC-CcEE
Q 001403 524 CTRMAYSANGRRLFSCGTSKE-------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-HVIK 595 (1084)
Q Consensus 524 i~~~~~s~d~~~l~~~~~~~~-------~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~ 595 (1084)
+...+...+|+.++.++...+ ....+.+||..+++..........+.......++.+++..++.|+.+ ..+.
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~ 101 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 101 (387)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence 334445567888887774221 11247789999876543222111111223456788999998887654 6899
Q ss_pred EEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC------CeEEEEEcCCCC
Q 001403 596 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE------NRIKILETPESN 647 (1084)
Q Consensus 596 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------g~i~iwd~~~~~ 647 (1084)
+||..+......-..... ..-..++..+||++++.++.+ ..+.+||..+.+
T Consensus 102 ~yd~~~~~w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 102 LYDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp EEEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred EecCccCccccccccccc-ccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence 999998776543332222 123567788899999998753 468899988764
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.52 E-value=0.024 Score=63.48 Aligned_cols=187 Identities=12% Similarity=0.052 Sum_probs=103.5
Q ss_pred eEEEEEcCCceeEEEEcCCCC---------CeEEEEEcC--CCCcEEEEEeCCCeEEEEEcCCceeeeeeccccc-----
Q 001403 816 VISLYIVMTFKTILTIMPPSP---------TATSLAFNP--HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK----- 879 (1084)
Q Consensus 816 ~i~vwd~~~~~~~~~~~~~~~---------~i~~l~~s~--~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~----- 879 (1084)
.|...|+.+++....++.... ......... .....++.++.+|.++++|..+|+.+........
T Consensus 284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~ 363 (573)
T d1kb0a2 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (573)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccc
Confidence 466667777777665543211 111222222 1124677888999999999999987654321100
Q ss_pred ------------------------------CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCC
Q 001403 880 ------------------------------RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 929 (1084)
Q Consensus 880 ------------------------------~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 929 (1084)
.-..++++|+..++.....+....++.....+... ...+......
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~ 438 (573)
T d1kb0a2 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ-----AGPGKPQSGT 438 (573)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC-----CCTTSTTGGG
T ss_pred cccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeeccccccccc-----CCCCcccccc
Confidence 01124677777777776666666665554422111 0000000000
Q ss_pred CceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 930 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 930 ~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
......+ +++.-.....-|.+.-||+.+|+.+.+...+. +...=..+..|.++++++.||.++.+|..+|+.+.++.
T Consensus 439 ~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~--p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~ 515 (573)
T d1kb0a2 439 GWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS--PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (573)
T ss_dssp TCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccccc-cccCCCCCCCcccEEEeCCCCCceEeeecCCC--CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence 0000000 00000000122578889999999887755432 22222234567899999999999999999999998877
Q ss_pred c
Q 001403 1010 S 1010 (1084)
Q Consensus 1010 ~ 1010 (1084)
.
T Consensus 516 ~ 516 (573)
T d1kb0a2 516 T 516 (573)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.52 E-value=0.02 Score=63.85 Aligned_cols=193 Identities=8% Similarity=0.050 Sum_probs=118.2
Q ss_pred CCeEEEEEcCCceeEEEEcCCC-------------------------------------CCe-EEEEEcCCCCcEEEEEe
Q 001403 814 GGVISLYIVMTFKTILTIMPPS-------------------------------------PTA-TSLAFNPHDNNVIAIGM 855 (1084)
Q Consensus 814 dg~i~vwd~~~~~~~~~~~~~~-------------------------------------~~i-~~l~~s~~d~~~la~g~ 855 (1084)
.|.|+-+|+.||+.+..+.... ..+ ...++.+ ...++..+.
T Consensus 175 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~-~~g~~y~~t 253 (571)
T d2ad6a1 175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGS 253 (571)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred cCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccch-hcCeeeeec
Confidence 5789999999999988754221 111 2346666 455555554
Q ss_pred C----------------CCeEEEEEcCCceeeeeeccccc---------CEEEEEEcCCCC---EEEEEeCCCcEEEEeC
Q 001403 856 D----------------DSTILIYNARSSEVISKLEGHSK---------RVTGLVFSDALN---ILVSSGGDAQIFVWDV 907 (1084)
Q Consensus 856 ~----------------dg~i~iwd~~~~~~~~~l~~h~~---------~V~~l~~spd~~---~l~s~s~dg~I~iwd~ 907 (1084)
. ...+.-.|..+|+.+..++.+.. .........+++ .++.++.+|.+.+.|.
T Consensus 254 g~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr 333 (571)
T d2ad6a1 254 GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNR 333 (571)
T ss_dssp CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEET
T ss_pred ccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEec
Confidence 4 24677889999998877664211 112222333453 4678889999999999
Q ss_pred CCCceeeeeeeec------------------CCCCcc-----------CCC--CceEEEEccCCCEEEEE-eC-------
Q 001403 908 DGWGIQTCRSLQT------------------PDGVMT-----------LAP--SETHIQFHKDQTRFLLV-HE------- 948 (1084)
Q Consensus 908 ~~~~~~~~~~~~~------------------~~~~~~-----------~~~--~v~~~~~s~dg~~la~~-~d------- 948 (1084)
.+|+......... ...... ..+ .-...+++|+..++.+. .+
T Consensus 334 ~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~ 413 (571)
T d2ad6a1 334 ENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEP 413 (571)
T ss_dssp TTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred CCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEecccccccccc
Confidence 9988542110000 000000 000 01236788887777652 11
Q ss_pred ------------------------------CeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 001403 949 ------------------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 998 (1084)
Q Consensus 949 ------------------------------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd 998 (1084)
|.|.-+|+.+|+.+.+...+. +..+=..+..|.++++++.||.++.+|
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~--~~~~g~l~TagglVf~G~~dg~l~A~D 491 (571)
T d2ad6a1 414 FMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp CCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred ccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCC--CCCcceeEecCCEEEEECCCCeEEEEE
Confidence 357778888888887654432 111111233466888899999999999
Q ss_pred cCCCceeEEec
Q 001403 999 ASNLEVQCRIL 1009 (1084)
Q Consensus 999 ~~~~~~~~~~~ 1009 (1084)
.++|+.+.++.
T Consensus 492 a~tGe~lW~~~ 502 (571)
T d2ad6a1 492 NKDGKELWNFK 502 (571)
T ss_dssp TTTCCEEEEEE
T ss_pred CCCCcEEEEEE
Confidence 99999998876
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.51 E-value=0.077 Score=59.22 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=45.9
Q ss_pred CeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 949 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 949 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
|.|.-+|+.+|+.+.+...++ ++.+-..+..|.++++++.||.++.+|.++|+.+.++.
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~--p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~ 524 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEcCCCCcEEeecCCCC--CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence 568889999999888765433 23222344567788899999999999999999998877
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.49 E-value=0.13 Score=57.25 Aligned_cols=380 Identities=11% Similarity=0.038 Sum_probs=190.9
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCC--------CcE-EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecC
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHG--------APV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 519 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~--------~~v-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 519 (1084)
.++.++.++.|.-.|.++|+.+-++.... ..+ ..+++ .+..++.++.++.+.-.|..+++.......
T Consensus 70 ~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~----~~~~i~~~t~~~~l~alda~tG~~~W~~~~ 145 (582)
T d1flga_ 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred EEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE----eCCceEEecCCCeEEEecccccceeeeecc
Confidence 36667778888888999999887653210 001 11222 124677888999988889888887654332
Q ss_pred CCC--------eEEEEEEcCCCCEEEEEeeCC---CCCeeEEEecCCCceEeeeeecccc--------------------
Q 001403 520 PGL--------GCTRMAYSANGRRLFSCGTSK---EGESFLVEWNESEGAIKRTYQGLQL-------------------- 568 (1084)
Q Consensus 520 ~~~--------~i~~~~~s~d~~~l~~~~~~~---~~~~~i~~wd~~~~~~~~~~~~~~~-------------------- 568 (1084)
... .-....--..+..++..+... ...+.|.-+|..+|+.+-.+.....
T Consensus 146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~ 225 (582)
T d1flga_ 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccccc
Confidence 111 000011111233333332211 1245688899999988776543210
Q ss_pred -----------------ccCce-EEEEEcCCCCEEEEEEC------------------------CCcEEEEECCCCeEEE
Q 001403 569 -----------------QHNSV-SVVHFDTAKDQILAAGD------------------------DHVIKIWDMNKVQLLT 606 (1084)
Q Consensus 569 -----------------~~~~v-~~~~~s~~~~~l~~~~~------------------------dg~i~iwd~~~~~~~~ 606 (1084)
....+ ..+++.+....++.+.. ...+.-.|..+|+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W 305 (582)
T d1flga_ 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence 00111 23567777777776541 2346778899999887
Q ss_pred EEcCCCCCCC-------cceEEEe-cCCC---EEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeec
Q 001403 607 TIDAGGGLPE-------NPRICFN-KNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 675 (1084)
Q Consensus 607 ~~~~~~~~~~-------v~~v~~s-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~ 675 (1084)
.++...+... ..-+.+. .+++ .++..+.++.+.++|..+++.+....................
T Consensus 306 ~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~------ 379 (582)
T d1flga_ 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTG------ 379 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTC------
T ss_pred cccccccccccccccccccccccccccccccceeEeecccccEEeecccCCcccccccccCccccccccccccc------
Confidence 7764322111 0111121 2333 566677889999999999987765443333322222221110
Q ss_pred cCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeec
Q 001403 676 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 755 (1084)
Q Consensus 676 ~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~ 755 (1084)
.........+ .....+.. ........|.......-...+++|+...+++...+....+|..
T Consensus 380 ---~~~~~~~~~~--~~~~~~~~--------------~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~ 440 (582)
T d1flga_ 380 ---RPVEREGQRP--PLPEPGQK--------------HGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTE 440 (582)
T ss_dssp ---CEEECTTCSC--CCCCTTCS--------------SCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEEC
T ss_pred ---cceecccccc--cccccccc--------------ccceEEECCCccCCcccccceecCCCCceeeeccccccccccc
Confidence 0000000000 00000000 0000000111001111223567777766666665543333321
Q ss_pred cCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe---CCeEEEEEcCCceeEEEEc
Q 001403 756 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIM 832 (1084)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~~~~~~~ 832 (1084)
.... ..+ ......... +.... .|.+.-+|+.+|+.+....
T Consensus 441 ~~~~------------------~~g------------~~~~~~~~~-------~~~~~~~~~G~l~AiD~~TG~i~W~~~ 483 (582)
T d1flga_ 441 EVSY------------------TKG------------SAYLGMGFR-------IKRMYDDHVGSLRAMDPVSGKVVWEHK 483 (582)
T ss_dssp CCCC------------------CTT------------SCCCCEEEE-------EEESCSSCSEEEEEECTTTCCEEEEEE
T ss_pred cccc------------------ccc------------ccccccCcc-------ccccccCCCCeEEEEcCCCCcEEeecC
Confidence 1100 000 000000000 11111 3678889999998887766
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccC-EEEEEEcCCCC-EEEEE
Q 001403 833 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALN-ILVSS 896 (1084)
Q Consensus 833 ~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~spd~~-~l~s~ 896 (1084)
.+... ..-.++. .+.++++|+.||.++-+|.++|+.+.+++-.... -.-+.|..||+ |++..
T Consensus 484 ~~~p~-~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~ 547 (582)
T d1flga_ 484 EHLPL-WAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp ESSCC-CSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCCC-ccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence 43322 1112233 4568888999999999999999999887632211 11156667885 55543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.33 E-value=0.082 Score=58.96 Aligned_cols=193 Identities=14% Similarity=0.170 Sum_probs=118.3
Q ss_pred CCeEEEEEcCCceeEEEEcCCC-------------------------------------C-CeEEEEEcCCCCcEEEEEe
Q 001403 814 GGVISLYIVMTFKTILTIMPPS-------------------------------------P-TATSLAFNPHDNNVIAIGM 855 (1084)
Q Consensus 814 dg~i~vwd~~~~~~~~~~~~~~-------------------------------------~-~i~~l~~s~~d~~~la~g~ 855 (1084)
.|.|+-+|+.||+.+-++.... . .-..+++.+ ...++..+.
T Consensus 181 ~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~-~~~lvy~~t 259 (596)
T d1w6sa_ 181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGT 259 (596)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred cCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCcccccccccc-CCCeeeccc
Confidence 3789999999999988754211 0 112345666 455555553
Q ss_pred CC----------------CeEEEEEcCCceeeeeecc--cc-------cCEEEEEE-cCCC---CEEEEEeCCCcEEEEe
Q 001403 856 DD----------------STILIYNARSSEVISKLEG--HS-------KRVTGLVF-SDAL---NILVSSGGDAQIFVWD 906 (1084)
Q Consensus 856 ~d----------------g~i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~-spd~---~~l~s~s~dg~I~iwd 906 (1084)
.+ ..|.-.|+.+|+.+..++. |. .....+.. ..+| +.++..+.+|.+.++|
T Consensus 260 g~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlD 339 (596)
T d1w6sa_ 260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLD 339 (596)
T ss_dssp CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeec
Confidence 32 3577889999998876653 21 11211221 2344 4678889999999999
Q ss_pred CCCCceeeeeeeecC------------------CCCccC-----------C--CCceEEEEccCCCEEEEE-e-------
Q 001403 907 VDGWGIQTCRSLQTP------------------DGVMTL-----------A--PSETHIQFHKDQTRFLLV-H------- 947 (1084)
Q Consensus 907 ~~~~~~~~~~~~~~~------------------~~~~~~-----------~--~~v~~~~~s~dg~~la~~-~------- 947 (1084)
-.+|+.......... ...... . ..-...+++|+..++.+. .
T Consensus 340 r~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~ 419 (596)
T d1w6sa_ 340 RTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWE 419 (596)
T ss_dssp TTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred CCCCceeeeccccccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccc
Confidence 999886542211100 000000 0 001245677776665542 1
Q ss_pred --------------------------------CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 001403 948 --------------------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLS 995 (1084)
Q Consensus 948 --------------------------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~ 995 (1084)
-|.|.-||..+|+.+.+...+ .++.+=.++..|.++++|+.||.++
T Consensus 420 ~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~--~~~~gg~lsTagglVF~G~~Dg~l~ 497 (596)
T d1w6sa_ 420 PFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTMATAGDLVFYGTLDGYLK 497 (596)
T ss_dssp ECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEE
T ss_pred cccccccccccccccccccccCcccCcccCCCcceEEEEeCCCCceecccCCC--CCCccceeEecCCEEEEECCCCeEE
Confidence 146778888888887664432 2222223345677888999999999
Q ss_pred EEEcCCCceeEEec
Q 001403 996 IHEASNLEVQCRIL 1009 (1084)
Q Consensus 996 vwd~~~~~~~~~~~ 1009 (1084)
.+|..+|+.+.++.
T Consensus 498 A~Da~TGe~LW~~~ 511 (596)
T d1w6sa_ 498 ARDSDTGDLLWKFK 511 (596)
T ss_dssp EEETTTCCEEEEEE
T ss_pred EEECCCCcEeeEEE
Confidence 99999999998887
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.24 E-value=0.1 Score=50.50 Aligned_cols=230 Identities=14% Similarity=0.144 Sum_probs=143.3
Q ss_pred EEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEcc
Q 001403 339 SMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 418 (1084)
Q Consensus 339 ~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~ 418 (1084)
+.-.+|..+.||... | .++.|+|+++..+..... ...+|..=.|-.+. .|+..... .|.-|+++
T Consensus 67 sAIMhP~~~IiALra-----g-----~~LQiFnletK~klks~~----~~e~VvfWkWis~~-~L~lVT~t-aVYHW~~~ 130 (327)
T d1utca2 67 SAIMNPASKVIALKA-----G-----KTLQIFNIEMKSKMKAHT----MTDDVTFWKWISLN-TVALVTDN-AVYHWSME 130 (327)
T ss_dssp EEEECSSSSEEEEEE-----T-----TEEEEEETTTTEEEEEEE----CSSCCCEEEESSSS-EEEEECSS-EEEEEESS
T ss_pred hhhcCCCCcEEEEec-----C-----CeEEEEehhHhhhhceEE----cCCCcEEEEecCCC-EEEEEcCC-ceEEEccc
Confidence 556789999998852 2 789999999877655433 33577777776543 55555444 59999997
Q ss_pred CCccccceeeeecccc----cEeEEEeecCCCcEEEEEE--e----CCCcEEEEECCCCceeeEeccCCCcEEEEeeccc
Q 001403 419 GGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITC--G----DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 488 (1084)
Q Consensus 419 ~~~~~~~~~~l~~h~~----~V~~l~~s~d~~~l~l~s~--~----~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~ 488 (1084)
+... +...+..|.. .|..-..+++.+++ +++| . -.|.+.+|..+.+ .-+.++||.+.-..+.+...
T Consensus 131 g~s~--P~k~fdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~ 206 (327)
T d1utca2 131 GESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGN 206 (327)
T ss_dssp SSCC--CEEEEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTC
T ss_pred CCCC--chhhhhhcccccCceEEEEEECCCCCEE-EEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCC
Confidence 6442 3334555543 57777788899863 3332 1 2356889996654 45678888877666655333
Q ss_pred CCCcEEE-EEe---cCCeEEEEECCCCC---ce-----Eee----cCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEe
Q 001403 489 ENIHFIF-SIS---VDGKIKAWLYDSLG---AR-----VDY----DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 552 (1084)
Q Consensus 489 ~~~~~l~-s~s---~dg~i~iwd~~~~~---~~-----~~~----~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~w 552 (1084)
.....|+ .+. ..+.+++-++.... .. ..+ .....-..++..|+.-..++..+. -|.+++|
T Consensus 207 ~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK----~G~i~ly 282 (327)
T d1utca2 207 AEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----YGYIHLY 282 (327)
T ss_dssp SSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET----TSEEEEE
T ss_pred CCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEec----CcEEEEE
Confidence 2222233 222 22578888886532 11 111 112334567888888888888775 7789999
Q ss_pred cCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEE
Q 001403 553 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 595 (1084)
Q Consensus 553 d~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 595 (1084)
|+.++.++..-+-.. ..|...+-..+..-+++...+|.|.
T Consensus 283 DleTgt~i~~nRIs~---~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 283 DLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp ETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTSEEE
T ss_pred EcccccEEEEeecCC---CceEEeccCCCCceEEEECCCCeEE
Confidence 999999876655444 4555444444545555555555543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.05 E-value=0.17 Score=54.05 Aligned_cols=105 Identities=7% Similarity=-0.068 Sum_probs=66.8
Q ss_pred EEEEEcCCCCEEEEEe-eCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC------------
Q 001403 525 TRMAYSANGRRLFSCG-TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD------------ 591 (1084)
Q Consensus 525 ~~~~~s~d~~~l~~~~-~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------ 591 (1084)
..+++|||+++++.+- ..|.....++++|+.+|+.+...-.. .....++|++|++.|+....+
T Consensus 128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~----~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~ 203 (430)
T d1qfma1 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER----VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (430)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE----ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred cceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc----ccccceEEcCCCCEEEEEEeccccCcccccccc
Confidence 4567899999988554 34555678999999999876432111 123567899999988765432
Q ss_pred ----CcEEEEECCCCeE--EEEEcCCCCCCCcceEEEecCCCEEEEEE
Q 001403 592 ----HVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIA 633 (1084)
Q Consensus 592 ----g~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 633 (1084)
..|..+.+.+... ...+........+..+..++++++++...
T Consensus 204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~ 251 (430)
T d1qfma1 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI 251 (430)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred cCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEe
Confidence 2577777766432 23333322222345667788998876543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.81 E-value=0.27 Score=48.11 Aligned_cols=233 Identities=9% Similarity=-0.045 Sum_probs=137.7
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe-CCCEEEEEEccCCccccce-eeeecccccEeEEEee
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFS 442 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~-~dg~v~iwd~~~~~~~~~~-~~l~~h~~~V~~l~~s 442 (1084)
..|+-.++.+..... +......+.+++|.+..+.|.... ..+.|.--+++........ ..+......+..+++.
T Consensus 10 ~~I~~~~l~~~~~~~----~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD 85 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 85 (266)
T ss_dssp SSEEEEETTSCCCEE----EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred CeEEEEECCCCccee----eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEe
Confidence 346666665433221 122445778999999888887765 4566776666542211111 1222333457789998
Q ss_pred cCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEE-ecCCeEEEEECCCCCceEeecCCC
Q 001403 443 APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAPG 521 (1084)
Q Consensus 443 ~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~ 521 (1084)
+.++. +..+-...+.|.+.++........+.........+++++. .|.++.+. +..+.|...+++...........-
T Consensus 86 ~~~~~-lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~-~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~ 163 (266)
T d1ijqa1 86 WIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI 163 (266)
T ss_dssp TTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCCEEEEECSSC
T ss_pred eccce-EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcc-cCeEEEeccCCCcceeEeccCCCceeccccccc
Confidence 87775 3344556778999998766655555555667788888654 33444443 234567767776655444444444
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEE-ECCCcEEEEECC
Q 001403 522 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMN 600 (1084)
Q Consensus 522 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~ 600 (1084)
.....+++.+.++.|+.+.. ..+.|...++............. .......+++. +..|+.+ ..++.|+..+..
T Consensus 164 ~~p~gl~iD~~~~~lYw~d~---~~~~I~~~~~dG~~~~~~~~~~~-~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~ 237 (266)
T d1ijqa1 164 QWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 237 (266)
T ss_dssp SCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTT-TTSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred ceeeEEEeeccccEEEEecC---CcCEEEEEECCCCCEEEEEeCCC-cccccEEEEEE--CCEEEEEECCCCeEEEEECC
Confidence 56789999999998888743 25578888886554333333322 11234566665 3455554 466778878877
Q ss_pred CCeEEEEEc
Q 001403 601 KVQLLTTID 609 (1084)
Q Consensus 601 ~~~~~~~~~ 609 (1084)
++.....+.
T Consensus 238 ~g~~~~~~~ 246 (266)
T d1ijqa1 238 TGSDVNLLA 246 (266)
T ss_dssp TCCCCEEEE
T ss_pred CCcceEEEE
Confidence 776555554
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.08 E-value=0.0017 Score=48.13 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhhhhcChHHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhccc
Q 001403 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLSSF 60 (1084)
Q Consensus 5 ~~~~~rli~q~L~~~g~~~s~~~l~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~~~ 60 (1084)
++|+-+-|++||...||.+++.+|.+|..+.++ ...-..-+++-+|..++.+-+++
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkKI 64 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV 64 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHHH
Confidence 578999999999999999999999999988765 56666778888998887775553
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.39 E-value=1.9 Score=43.46 Aligned_cols=184 Identities=9% Similarity=0.112 Sum_probs=99.4
Q ss_pred eEEEeecCCCcEEEEEEe------------CCCcEEEEECCCCcee-eEe--ccC-----CCcEEEEeecccCCCc-EEE
Q 001403 437 NDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRT-YSF--EGH-----GAPVYSLCPHAKENIH-FIF 495 (1084)
Q Consensus 437 ~~l~~s~d~~~l~l~s~~------------~d~~i~vwd~~~g~~~-~~~--~~h-----~~~v~~~~~~~~~~~~-~l~ 495 (1084)
..++..|||. ++++++ ..|.|.++|+.+.... ..+ .+. .-....+.+....++. +|+
T Consensus 38 EDi~~~~dg~--~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~ 115 (340)
T d1v04a_ 38 EDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 115 (340)
T ss_dssp CEEEECTTSE--EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred ceEEECCCCc--EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence 3566667765 444332 1478889998765432 122 111 1123444443344554 344
Q ss_pred EEe---cCCeEEEEECCCCCceEe----ecC-CCCeEEEEEEcCCCCEEEEEeeCC-------------CCCeeEEEecC
Q 001403 496 SIS---VDGKIKAWLYDSLGARVD----YDA-PGLGCTRMAYSANGRRLFSCGTSK-------------EGESFLVEWNE 554 (1084)
Q Consensus 496 s~s---~dg~i~iwd~~~~~~~~~----~~~-~~~~i~~~~~s~d~~~l~~~~~~~-------------~~~~~i~~wd~ 554 (1084)
+.. ...+|.+|++........ ... .......+++..+|.++++-.... ...+.+.-||.
T Consensus 116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~ 195 (340)
T d1v04a_ 116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 195 (340)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence 432 456788888865543322 222 223578889999998888732110 12344555654
Q ss_pred CCceEeeeeeccccccCceEEEEEcCCCCEEEEE-ECCCcEEEEECCCCeEE---EEEcCCCCCCCcceEEEec-CCCEE
Q 001403 555 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLL---TTIDAGGGLPENPRICFNK-NGTLL 629 (1084)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~v~~s~-~~~~l 629 (1084)
.. ......+. ...+.++++||+++|+++ +..+.|++|++.....+ ......+ ..-.+.+.+ +|.+.
T Consensus 196 ~~--~~~~~~~l----~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~---~pDNi~~d~~~g~lw 266 (340)
T d1v04a_ 196 ND--VRVVAEGF----DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDT---LVDNISVDPVTGDLW 266 (340)
T ss_dssp SC--EEEEEEEE----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSS---EEEEEEECTTTCCEE
T ss_pred Cc--eEEEcCCC----CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCC---CCCccEEecCCCEEE
Confidence 33 32223322 467899999999888775 46788999988754322 2222222 134566765 34444
Q ss_pred EE
Q 001403 630 AV 631 (1084)
Q Consensus 630 ~~ 631 (1084)
+.
T Consensus 267 va 268 (340)
T d1v04a_ 267 VG 268 (340)
T ss_dssp EE
T ss_pred EE
Confidence 33
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.68 E-value=4.2 Score=41.10 Aligned_cols=184 Identities=10% Similarity=0.077 Sum_probs=108.1
Q ss_pred CCCccEEEecCCCCEEEEEeCCeEEEEEcCCc-----------eeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 001403 794 QEAVPCFALSKNDAYLFSASGGVISLYIVMTF-----------KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 862 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~-----------~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~i 862 (1084)
.....-+++++...++++++...+.|..+..- ....... -..|..++|+. + .|++. .++.+..
T Consensus 36 ~~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~-d--~l~v~-~~~~l~~ 109 (381)
T d1xipa_ 36 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHG-D--QVLVS-TRNALYS 109 (381)
T ss_dssp SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEET-T--EEEEE-ESSEEEE
T ss_pred ccccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeC-C--EEEEE-eCCCEEE
Confidence 34567889999888888888777888875321 1111111 23689999986 3 45544 4566888
Q ss_pred EEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCE
Q 001403 863 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 942 (1084)
Q Consensus 863 wd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 942 (1084)
++..+-........-..++..+.++|. .++....++.+.++++..+...... ....+ ....+.+.+++|++.|+.
T Consensus 110 ~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~--~~v~~-~~~~~~~~~v~ws~kgkq 184 (381)
T d1xipa_ 110 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLA--QNVTS-FDVTNSQLAVLLKDRSFQ 184 (381)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEE--ESEEE-EEECSSEEEEEETTSCEE
T ss_pred EEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcccccc--CCcce-EEecCCceEEEEeCCcEE
Confidence 877653333333333456788888775 4666778899999999987533211 10000 001125778888888888
Q ss_pred EEEEeCCeEEEE-EcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEe
Q 001403 943 FLLVHETHLAIY-EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 989 (1084)
Q Consensus 943 la~~~d~~i~vw-d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 989 (1084)
++++.++...+- ++.....+.. .......|.+|.|..+..++++-+
T Consensus 185 ~v~~~g~~~q~k~~i~~~~~~~~-p~~~~~~v~sI~WL~~~~F~vvy~ 231 (381)
T d1xipa_ 185 SFAWRNGEMEKQFEFSLPSELEE-LPVEEYSPLSVTILSPQDFLAVFG 231 (381)
T ss_dssp EEEEETTEEEEEEEECCCHHHHT-SCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEeCCCceeeccCCCCccccCC-CcCCCcceeEEEEecCceEEEEEC
Confidence 887644433321 1111111110 011245788999998877777553
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.68 E-value=2.3 Score=38.07 Aligned_cols=160 Identities=13% Similarity=0.099 Sum_probs=96.1
Q ss_pred EEEEEcCCceeEEEEcCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee--eeeccc-------ccCEEEEEE
Q 001403 817 ISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLEGH-------SKRVTGLVF 886 (1084)
Q Consensus 817 i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~--~~l~~h-------~~~V~~l~~ 886 (1084)
+.+-++...-....+.... -.|.+++.. |.+.+.+|+......+|-++.|++. ..+.+. .+.|..+.|
T Consensus 84 i~~~Nlk~~GEE~~i~spk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~ 161 (313)
T d2hu7a1 84 LFKVNTSRPGEEQRLEAVKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGF 161 (313)
T ss_dssp EEEEETTSTTCEEECTTSCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEE
T ss_pred EEEEccCCCCeeeEecCCceEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEee
Confidence 5555554323333444333 567777775 6788889998888999999888653 333322 123333332
Q ss_pred -cCCCCEEEEEeC-CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE----eCCeEEEEEcCCcc
Q 001403 887 -SDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELT 960 (1084)
Q Consensus 887 -spd~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~----~d~~i~vwd~~~~~ 960 (1084)
.++.+-+.++.- .|.++|++-..| .++....+++.+. ++. .+....-+|..+++
T Consensus 162 ~~g~~~sfF~adl~SG~lri~tpkeG-------------------S~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~ 221 (313)
T d2hu7a1 162 FGGGRVSLFTSNLSSGGLRVFDSGEG-------------------SFSSASISPGMKV-TAGLETAREARLVTVDPRDGS 221 (313)
T ss_dssp EETTEEEEEEEETTTEEEEEECCSSE-------------------EEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCC
T ss_pred ecCCcceEEEEecccCCEEEecCCCC-------------------cccceeEccCcee-eeccCCCCceEEEEEecccCc
Confidence 223233444443 455555554442 4667777888777 443 22233355888776
Q ss_pred eeeEeecCC------CCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 001403 961 CLKQWFPIS------SVPISQATFSCDCRMVFTSFVDGTLSIHE 998 (1084)
Q Consensus 961 ~~~~~~~~h------~~~v~~l~fs~dg~~l~t~~~dg~i~vwd 998 (1084)
.-..-++.. .-.|+-+-+.||+++++.+-.||.-+++.
T Consensus 222 yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~ 265 (313)
T d2hu7a1 222 VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI 265 (313)
T ss_dssp EEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred eeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee
Confidence 544433322 44566677999999989999999999885
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=93.58 E-value=4.1 Score=40.68 Aligned_cols=233 Identities=12% Similarity=0.092 Sum_probs=124.3
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcC----C-CCcEEEEEe--CC--CeEEEEEcCC-ceeeee
Q 001403 805 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNP----H-DNNVIAIGM--DD--STILIYNARS-SEVISK 873 (1084)
Q Consensus 805 dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~----~-d~~~la~g~--~d--g~i~iwd~~~-~~~~~~ 873 (1084)
+..+++... .+.+.+||++ |+.+..+. .+.+..+..-. . ...-+++++ .+ .+|.+|.+.. ...+..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence 344555554 4569999985 88877765 34555544321 0 223344554 22 3688887753 222333
Q ss_pred eccc-------ccCEEEEEE--cCC-CC-EEEEEeCCCcEEEEeCCCCc--eeeeeeeecCCCCccCCCCceEEEEccCC
Q 001403 874 LEGH-------SKRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKDQ 940 (1084)
Q Consensus 874 l~~h-------~~~V~~l~~--spd-~~-~l~s~s~dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 940 (1084)
+... ...+..+|+ ++. |. +++....+|.+..|.+.... ......++.+... ..+..|.+.+..
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~----~q~EGCVvDde~ 191 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN----SQTEGMAADDEY 191 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS----SCEEEEEEETTT
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC----CccceEEEeCCC
Confidence 3221 124667777 554 44 45667778999988874321 1222333333222 258899999999
Q ss_pred CEEEEEeCC-eEEEEEcC--C---cceeeEeecCC-CCCEEEEEEc--cCCC-EE-EEEeCCCcEEEEEcCCC-ceeEEe
Q 001403 941 TRFLLVHET-HLAIYEAE--E---LTCLKQWFPIS-SVPISQATFS--CDCR-MV-FTSFVDGTLSIHEASNL-EVQCRI 1008 (1084)
Q Consensus 941 ~~la~~~d~-~i~vwd~~--~---~~~~~~~~~~h-~~~v~~l~fs--~dg~-~l-~t~~~dg~i~vwd~~~~-~~~~~~ 1008 (1084)
..|.++.++ .|..+++. . +..+.....++ ...+-.|+.- .++. || +|.-.+++..|||..+. +.+.+|
T Consensus 192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F 271 (353)
T d1h6la_ 192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF 271 (353)
T ss_dssp TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence 999998554 45555543 1 12222211222 5667777643 3433 44 44446788999999874 677666
Q ss_pred cccc--ccCCCCcccceeeeEEEECCCC-CCEEEEEeCC
Q 001403 1009 LSTA--YLRPTTSCLHVYPHAIAAHPLK-PTQFAVGLTN 1044 (1084)
Q Consensus 1009 ~~~~--~~~~~~~~~~v~~~~~~~~p~d-~~~l~~~~~d 1044 (1084)
.... .+-.-.+.+.+-.....+.|.= ..+||+-+..
T Consensus 272 ~i~~~~~iDgvs~TDGi~v~~~~lg~~fp~Gl~VvqDg~ 310 (353)
T d1h6la_ 272 QITDGPETDGTSDTDGIDVLGFGLGPEYPFGLFVAQNGE 310 (353)
T ss_dssp EECCCSSSCCCCSCCCEEEECSCCSTTCTTCEEEEEESS
T ss_pred EEecCCCcCccccCchheEEcccCCCCCCCeeEEEEcCC
Confidence 5221 1211223454544444333310 2356655443
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.00 E-value=2 Score=43.60 Aligned_cols=136 Identities=7% Similarity=-0.014 Sum_probs=84.9
Q ss_pred CccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec
Q 001403 796 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 875 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~ 875 (1084)
.|..++|+.| .++...++.+..++..+.............+..+.+.| . .++....+|.+.++++..++......
T Consensus 88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p-~--~~~l~~~~~~~~~~~l~~~~~~~~~~ 162 (381)
T d1xipa_ 88 DVIFVCFHGD--QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQLAQ 162 (381)
T ss_dssp TEEEEEEETT--EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEeeCC--EEEEEeCCCEEEEEeeccccccccccccccccceecCC-c--eeEEEecCCCEEEEEeccCccccccC
Confidence 5788899755 57777788888898876555544444456788888887 3 56667779999999998875432221
Q ss_pred c-----cccCEEEEEEcCCCCEEEEEeCCCcEEE-EeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE
Q 001403 876 G-----HSKRVTGLVFSDALNILVSSGGDAQIFV-WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 945 (1084)
Q Consensus 876 ~-----h~~~V~~l~~spd~~~l~s~s~dg~I~i-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 945 (1084)
+ -++.+.+++|++.|+.++++..++ ..+ -++.. ...+..... ....+.++.|-.+..++++
T Consensus 163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~-----~~~~~~p~~---~~~~v~sI~WL~~~~F~vv 229 (381)
T d1xipa_ 163 NVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSL-----PSELEELPV---EEYSPLSVTILSPQDFLAV 229 (381)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECC-----CHHHHTSCT---TTSEEEEEEESSSSEEEEE
T ss_pred CcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCC-----ccccCCCcC---CCcceeEEEEecCceEEEE
Confidence 1 235678888888888777764332 111 11111 111111111 1124778888888877776
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=92.96 E-value=5.1 Score=39.97 Aligned_cols=193 Identities=14% Similarity=0.138 Sum_probs=108.8
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecc----cCCCcEEEEEec--C--CeEEEEECCCCCc-eEeecC
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA----KENIHFIFSISV--D--GKIKAWLYDSLGA-RVDYDA 519 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~s~--d--g~i~iwd~~~~~~-~~~~~~ 519 (1084)
+++.....+-|.+||+ .|+.+..+. .+.++.+.... ..+...++.++. + .+|.+|.++.... ...+..
T Consensus 42 lI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~ 118 (353)
T d1h6la_ 42 KLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD 118 (353)
T ss_dssp EEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred EEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence 5666666777999997 588887764 34566554321 222223444442 2 3688888764333 222222
Q ss_pred C-------CCeEEEEEE--cCC-CCEEEEEeeCCCCCeeEEEecC---CCc----eEeeeeeccccccCceEEEEEcCCC
Q 001403 520 P-------GLGCTRMAY--SAN-GRRLFSCGTSKEGESFLVEWNE---SEG----AIKRTYQGLQLQHNSVSVVHFDTAK 582 (1084)
Q Consensus 520 ~-------~~~i~~~~~--s~d-~~~l~~~~~~~~~~~~i~~wd~---~~~----~~~~~~~~~~~~~~~v~~~~~s~~~ 582 (1084)
. ...+..+|+ ++. |...+.... + ++.+..|.+ ..+ +.++.+... ..+..|.+....
T Consensus 119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~-k--~G~v~q~~l~~~~~g~v~~~lvr~f~~~----~q~EGCVvDde~ 191 (353)
T d1h6la_ 119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG-K--EGEFEQYELNADKNGYISGKKVRAFKMN----SQTEGMAADDEY 191 (353)
T ss_dssp SSSCEECSSSSCCCEEEEECTTTCCEEEEEEC-S--SSEEEEEEEEECTTSSEEEEEEEEEECS----SCEEEEEEETTT
T ss_pred cccccccccCcceEEEEEecCCCCeEEEEEEc-C--CceEEEEEEEcCCCCceeeEeeeccCCC----CccceEEEeCCC
Confidence 1 123556666 664 555444442 2 445666654 233 344455443 478899999999
Q ss_pred CEEEEEECCCcEEEEECC-----CCeEEEEEcCCCCCCCcceEEEec--CCC-EEE-EEECCCeEEEEEcCCC-Ceeee
Q 001403 583 DQILAAGDDHVIKIWDMN-----KVQLLTTIDAGGGLPENPRICFNK--NGT-LLA-VIANENRIKILETPES-NSVDA 651 (1084)
Q Consensus 583 ~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~s~--~~~-~l~-~~~~dg~i~iwd~~~~-~~~~~ 651 (1084)
..|+.+-++.-|+.++.. .+..+.......-...+..++.-. ++. +|+ +.-.+++..+||.... +.+..
T Consensus 192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~ 270 (353)
T d1h6la_ 192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVAD 270 (353)
T ss_dssp TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccce
Confidence 999999998877766654 223333332222233456666543 333 444 4445789999998763 44433
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.30 E-value=0.66 Score=45.71 Aligned_cols=224 Identities=11% Similarity=0.031 Sum_probs=105.7
Q ss_pred CeEEEEEcCCceeEE--EEcCCCCCeEEEEEcCCCCcEEEEEeCC---------CeEEEEEcCCceee--eeecccccCE
Q 001403 815 GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARSSEVI--SKLEGHSKRV 881 (1084)
Q Consensus 815 g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~la~g~~d---------g~i~iwd~~~~~~~--~~l~~h~~~V 881 (1084)
..+.+||..+++-.. .+......- +++.. ++++++.|+.. ..+.+||..+.+-. ..+......-
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~ 95 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI 95 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred ceEEEEECCCCeEEECCCCCCcccee-EEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecce
Confidence 358899988765322 232222222 22222 56677776531 36778888765432 2221111111
Q ss_pred EEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-e-----CCe
Q 001403 882 TGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-----ETH 950 (1084)
Q Consensus 882 ~~l~~spd~~~l~s~s~dg~-----I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~-----d~~ 950 (1084)
.++. .++++++.++.++. +..+|..+............ .....+..-++.+++.+ . ...
T Consensus 96 ~~~~--~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------r~~~~~~~~~~~~~~~GG~~~~~~~~~ 165 (288)
T d1zgka1 96 GVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR--------RIGVGVAVLNRLLYAVGGFDGTNRLNS 165 (288)
T ss_dssp EEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC--------CBSCEEEEETTEEEEECCBCSSCBCCC
T ss_pred eccc--cceeeEEecceecccccceeeeeccccCccccccccccc--------cccceeeeeeecceEecCcccccccce
Confidence 1222 26677766654443 44566666432221111111 11111222344455543 2 245
Q ss_pred EEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeEEeccccccCCCCcccceee
Q 001403 951 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1025 (1084)
Q Consensus 951 i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1025 (1084)
+..||..+.+..............+.+ ..++..++.++.+ .....+|..+.+....-. .+.. ...
T Consensus 166 ~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~----r~~- 235 (288)
T d1zgka1 166 AECYYPERNEWRMITAMNTIRSGAGVC-VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP----MKHR----RSA- 235 (288)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC----CSSC----CBS-
T ss_pred EEEeecccccccccccccccccccccc-ceeeeEEEecCccccccccceeeeeecceeeecccC----ccCc----ccc-
Confidence 888888776543321111111111222 2345566666544 346677777765542111 1111 111
Q ss_pred eEEEECCCCCCEEEEEeCCCc-----EEEEcCCCCCCCcccCCCC
Q 001403 1026 HAIAAHPLKPTQFAVGLTNGE-----VYVIEPNEPGDTWAVLPPD 1065 (1084)
Q Consensus 1026 ~~~~~~p~d~~~l~~~~~dg~-----v~vw~~~~~~~~~~~~~~~ 1065 (1084)
.+++.. +++.++.|+.++. +.+||+.. .+|...+|.
T Consensus 236 ~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~ 276 (288)
T d1zgka1 236 LGITVH--QGRIYVLGGYDGHTFLDSVECYDPDT--DTWSEVTRM 276 (288)
T ss_dssp CEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT--TEEEEEEEC
T ss_pred eEEEEE--CCEEEEEecCCCCeecceEEEEECCC--CEEEECCCC
Confidence 123333 4688888877664 77888854 468877544
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.04 E-value=3.1 Score=43.73 Aligned_cols=112 Identities=11% Similarity=0.089 Sum_probs=64.2
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccC---CCEEEEE-e-------
Q 001403 879 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD---QTRFLLV-H------- 947 (1084)
Q Consensus 879 ~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---g~~la~~-~------- 947 (1084)
...++|+|.|||++|++--..|.|++++..++......-+........-......++|+|+ ..++.++ .
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~ 106 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence 4678999999999998765579999999888765443222211111111236789999986 3444432 1
Q ss_pred C----Ce--EEEEEcCCcce-------e-eEeecCCCCCEEEEEEccCCCEEEEEeC
Q 001403 948 E----TH--LAIYEAEELTC-------L-KQWFPISSVPISQATFSCDCRMVFTSFV 990 (1084)
Q Consensus 948 d----~~--i~vwd~~~~~~-------~-~~~~~~h~~~v~~l~fs~dg~~l~t~~~ 990 (1084)
+ +. +..+....... + .............|.|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence 0 12 33333222111 1 1111111234578999999988887764
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=91.36 E-value=7.8 Score=38.58 Aligned_cols=190 Identities=12% Similarity=0.055 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCEEEEEeC------------CCEEEEEEccCCccccceeeeeccc-----ccEeEEEe--ecCCCcEEEE
Q 001403 391 VNRVVWSPDGSLLGVAYS------------KHIVQLYAYHGGSDARQQLEIDAHV-----GNVNDLAF--SAPCKQISVI 451 (1084)
Q Consensus 391 V~~v~fspdg~~las~~~------------dg~v~iwd~~~~~~~~~~~~l~~h~-----~~V~~l~~--s~d~~~l~l~ 451 (1084)
.-.++..|||..+++++. .|.|.++|+++.+.......+.+.. -.-..+.. .++|+. +|+
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~-~L~ 115 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV-YLL 115 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCE-EEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcE-EEE
Confidence 335778899988877642 4889999988764322221222110 01122332 456664 344
Q ss_pred EE---eCCCcEEEEECCCCce-e---eEecc-CCCcEEEEeecccCCCcEEEEEec---------------CCeEEEEEC
Q 001403 452 TC---GDDKTIKVWDAVTGSR-T---YSFEG-HGAPVYSLCPHAKENIHFIFSISV---------------DGKIKAWLY 508 (1084)
Q Consensus 452 s~---~~d~~i~vwd~~~g~~-~---~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~---------------dg~i~iwd~ 508 (1084)
.. ....+|.++++..+.. + .++.. .....+.+++. +++.+++|-.. -+...+|..
T Consensus 116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~--~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~ 193 (340)
T d1v04a_ 116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 193 (340)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEe--cCCCEEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence 43 2456788888754332 1 22221 12346777764 35567777311 123344555
Q ss_pred CCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEE
Q 001403 509 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 588 (1084)
Q Consensus 509 ~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 588 (1084)
+........ ..-.....++++||+++|+++... ...|+.|++............. -....-.+.+.+++..+.++
T Consensus 194 ~~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t~---~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva 268 (340)
T d1v04a_ 194 SPNDVRVVA-EGFDFANGINISPDGKYVYIAELL---AHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVG 268 (340)
T ss_dssp CSSCEEEEE-EEESSEEEEEECTTSSEEEEEEGG---GTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEE
T ss_pred cCCceEEEc-CCCCccceeEECCCCCEEEEEeCC---CCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEE
Confidence 544433322 223356789999999999888653 5568888876433222211111 01445667777644344443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.41 E-value=6.1 Score=41.31 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=38.0
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee--eeec------ccccCEEEEEEcCC
Q 001403 836 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLE------GHSKRVTGLVFSDA 889 (1084)
Q Consensus 836 ~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~--~~l~------~h~~~V~~l~~spd 889 (1084)
...++|+|.| +++++++--..|.|++++..+++.. ..+. .-.+....|+|+|+
T Consensus 27 ~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 4678999999 8888876656899999998776532 2221 11346788999985
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.41 E-value=7.4 Score=37.41 Aligned_cols=176 Identities=13% Similarity=0.034 Sum_probs=82.6
Q ss_pred eEEEEEcCCceeEEE--EcCCCCCeEEEEEcCCCCcEEEEEeCCC-----eEEEEEcCCceeeeee--cccccCEEEEEE
Q 001403 816 VISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVISKL--EGHSKRVTGLVF 886 (1084)
Q Consensus 816 ~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~la~g~~dg-----~i~iwd~~~~~~~~~l--~~h~~~V~~l~~ 886 (1084)
.+.+||..+.+-... +......-.++.+ ++++++.|+.++ ....++..+..-...- .........+.
T Consensus 71 ~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~---~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~- 146 (288)
T d1zgka1 71 ALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV- 146 (288)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-
T ss_pred hhhhcccccccccccccccceecceecccc---ceeeEEecceecccccceeeeeccccCccccccccccccccceeee-
Confidence 477888876544322 1111111222222 566666665544 3445666654322111 11111111122
Q ss_pred cCCCCEEEEEeCC-----CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeC-----CeEEEEE
Q 001403 887 SDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----THLAIYE 955 (1084)
Q Consensus 887 spd~~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d-----~~i~vwd 955 (1084)
.++.+++.|+.+ ..+..||..+.+........... ....+ ...++++++. +.+ .....+|
T Consensus 147 -~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~i~i~GG~~~~~~~~~~~~~~ 217 (288)
T d1zgka1 147 -LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIR-------SGAGV-CVLHNCIYAAGGYDGQDQLNSVERYD 217 (288)
T ss_dssp -ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCC-------BSCEE-EEETTEEEEECCBCSSSBCCCEEEEE
T ss_pred -eeecceEecCcccccccceEEEeecccccccccccccccc-------ccccc-cceeeeEEEecCccccccccceeeee
Confidence 244566666553 35788888775533322111111 11122 2234455554 322 3577888
Q ss_pred cCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCc-----EEEEEcCCCcee
Q 001403 956 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-----LSIHEASNLEVQ 1005 (1084)
Q Consensus 956 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~-----i~vwd~~~~~~~ 1005 (1084)
..+.+.... ......+...-+...+++.++.|+.++. |.+||+.+.+..
T Consensus 218 ~~~~~~~~~-~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~ 271 (288)
T d1zgka1 218 VETETWTFV-APMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 271 (288)
T ss_dssp TTTTEEEEC-CCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred ecceeeecc-cCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCEEE
Confidence 776654332 1111122222222347888888876543 788999988654
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.18 E-value=26 Score=34.09 Aligned_cols=199 Identities=9% Similarity=0.120 Sum_probs=103.9
Q ss_pred CCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEE---eeccCCccCcCc
Q 001403 688 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM---WRWPRNDLTLST 764 (1084)
Q Consensus 688 ~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~v---w~~~~~~~~~~~ 764 (1084)
++...+++-+.+|.|+--..............+ .....+..+........++..++.|.++. |+++..+....|
T Consensus 3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~---k~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G 79 (323)
T d1wp5a_ 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAM---KDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCC---CTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCcc---cCCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccccc
Confidence 345556667777777543322110000011111 13345666666666667777777776643 444332221111
Q ss_pred ccceecCCeeecCCCCCccccccCcCCCCCCCcc-EEEecC--CCCEEEEEe-CCeEEEEEcCCcee------EEEEc-C
Q 001403 765 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP-CFALSK--NDAYLFSAS-GGVISLYIVMTFKT------ILTIM-P 833 (1084)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~s~--dg~~l~~~s-dg~i~vwd~~~~~~------~~~~~-~ 833 (1084)
.. +. ..++. .....+. .+...+ ...+++..+ .|.++...+..... ...+. .
T Consensus 80 ~p----------------i~-~ll~l-~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~ 141 (323)
T d1wp5a_ 80 QH----------------IA-NIIPI-DRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK 141 (323)
T ss_dssp EE----------------GG-GTSCC-CTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC
T ss_pred cc----------------ce-eeecc-cCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhcccc
Confidence 11 11 11111 1233333 333332 244555544 79999988754321 11111 2
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee-------e--eeecccccCEEEE-EEcCCCCEEEEEeCCCcEE
Q 001403 834 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-------I--SKLEGHSKRVTGL-VFSDALNILVSSGGDAQIF 903 (1084)
Q Consensus 834 ~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~-------~--~~l~~h~~~V~~l-~~spd~~~l~s~s~dg~I~ 903 (1084)
....+..+.+.. +...++.++..|.+..++...-.. + -.+. ..+.|.+. ...+++..|++.+..|..+
T Consensus 142 ~~D~l~~v~~~~-~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~-~~D~vv~~~~~~~~~~~ll~~T~~G~gK 219 (323)
T d1wp5a_ 142 NDDQVVDVHLTD-GMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVK 219 (323)
T ss_dssp TTCCEEEEEEEC-SCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEE
T ss_pred ccccccceeccC-CCeEEEEEEecceeeEeecccccccCcccccccccccc-cccccchhhhccccccceeeeeeeheee
Confidence 445667777776 667888899999999998764211 1 2222 23445544 4556778888899999888
Q ss_pred EEeCCC
Q 001403 904 VWDVDG 909 (1084)
Q Consensus 904 iwd~~~ 909 (1084)
.-.+..
T Consensus 220 r~~~~e 225 (323)
T d1wp5a_ 220 KMKLTE 225 (323)
T ss_dssp EEEGGG
T ss_pred cccchh
Confidence 866654
|
| >d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.87 E-value=1.1 Score=38.55 Aligned_cols=57 Identities=12% Similarity=0.208 Sum_probs=45.5
Q ss_pred hhhHHHHhHHHhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhccccccchh
Q 001403 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHE 128 (1084)
Q Consensus 72 ~~~~l~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~ 128 (1084)
++|.|+-+.||||+..|...+|..++++.-.-+.....++.++|..+.....+.+.+
T Consensus 45 lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~ 101 (149)
T d2nxpa1 45 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNE 101 (149)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhH
Confidence 999999999999999999999999999865555444567788888776665554444
|