Citrus Sinensis ID: 001405

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080---

MGKQKQQVISRFFAPKSNQTTASSSASSPRPPQQTPPPKIAATVSFSPAKRKVVSSLFPPKTPKKPKLSPHTLNPIPTPSSQTTHNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAEDVGGGEDGCGGESNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCLHALATLSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQEQEAQENMPVSPESFYLGRVEASEDLISAYRDLFLNLKFATHDDNPAKSFQFLKHARSIAKELIIR

ccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHHHcEEEEccccccccccccccHHHHHHHHHHcccEEEEEcccccHHHHcccccccccEEEccEEEEcccccccccccccccccccccccEEEEEEEcccccccccccccccccccEEEEEEEEcccccEEEEECccccHHHHHHHHHHcccccEEECcccccHHHHHHHHHHccccccCEEEccccccccccHHHHHHHHHHHHccccccccccccccccccccccccHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccEECccccEEEEcHHHHHccccccccccccccccHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcEEEEEEEECcccccccccEEHHHHccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEECccccccEEEECcccccEEcccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEccccccccccHHHHHHHHHHHHHHHHcccccEEEcccccHHHHHHHHccccCEEEEEEEEEcccccccccccccccEEEEEccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHc

*******************************************************************************************LEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAEDVGGGEDGCGGESNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCLHALATLSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMG***SKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKL**************************************FYLGRVEASEDLISAYRDLFLNLKFATHDDNPAKSFQFLKHARSIAKEL***

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MGKQKQQVISRFFAPKSNQTTASSSASSPRPPQQTPPPKIAATVSFSPAKRKVVSSLFPPKTPKKPKLSPHTLNPIPTPSSQTTHNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAEDVGGGEDGCGGESNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSExxxxxxxxxxxxxxxxxxxxxCRKQLGMRNLEFMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCLHALATLSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQEQEAQENMPVSPESFYLGRVEASEDLISAYRDLFLNLKFATHDDNPAKSFQFLKHARSIAKELIIR

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
DNA mismatch repair protein MSH3	Not known. Probable DNA-repair protein.	probable	O65607

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2O8B, chain B
Confidence level:very confident
Coverage over the Query: 36-470,495-940,954-1005
View the alignment between query and template
View the model in PyMOL

Template: 1WB9, chain A
Confidence level:very confident
Coverage over the Query: 81-227,244-314,328-341,360-478,509-843,855-996
View the alignment between query and template
View the model in PyMOL

Template: 3THX, chain B
Confidence level:confident
Coverage over the Query: 86-226,242-334,361-478,502-842,853-938,953-1022
View the alignment between query and template
View the model in PyMOL