Citrus Sinensis ID: 001405

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080---
MGKQKQQVISRFFAPKSNQTTASSSASSPRPPQQTPPPKIAATVSFSPAKRKVVSSLFPPKTPKKPKLSPHTLNPIPTPSSQTTHNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAEDVGGGEDGCGGESNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCLHALATLSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQEQEAQENMPVSPESFYLGRVEASEDLISAYRDLFLNLKFATHDDNPAKSFQFLKHARSIAKELIIR
cccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHHHcEEEEccccccccccccccHHHHHHHHHHcccEEEEEcccccHHHHcccccccccEEEccEEEEcccccccccccccccccccccccEEEEEEEcccccccccccccccccccEEEEEEEEcccccEEEEEEcccHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHccccccEEEEccccccccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccEEEccccEEEEcHHHHHccccccccccccccccHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcEEEEEEEEEcccccccccEEHHHHccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccEEEEEcccccEEcccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEcccccccccHHHHHHHHHHHHHHHHHcccccEEEcccccHHHHHHHHccccEEEEEEEEEEcccccccccccccccEEEEEccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHc
ccccccEEEEEcccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccHHHccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHHHHcEEEccccccccccccHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHcccccEEEEEEEEEcccccccHHHHccccccccccccEEEEEEEcccccccccccccccccccEEEEEEEEEcccEEEEEEcccccHHHHHHHHHHHccccHEEccccccccHHHHHHHHHHHccccccEccccccccHHHHHHHHHHHHcccccHcccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccEEcccccEEEEcHHHHHHHEEHHccccccccccHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEccccccHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccEEcccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccEEEEEcEEEEEEEEEcccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccccccEEEEccccccEEHEHccccccccccEccccccEEEEEEccccccHHHHHHHHHHHHHHHHHcccccHHccEEcEEcEEEEEccccHHHccccccHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHcccccccEEEEEEEcccccccEEEEccccEEEEEEEccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHccHcHHHHHHccccccccHHHHccccHccccHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcc
MGKQKQQVISRffapksnqttasssassprppqqtpppkiaatvsfspakrkvvsslfppktpkkpklsphtlnpiptpssqtthnkkytpLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHldhnfmtasiptfrLNVHVRRLVNAGFKVGVVKQTETAAikahgpgkagpfgrglsALYTKATLEaaedvgggedgcggesnYLVCVvdddgnvgkirngvfgdgfdVRLGVVAVEIStgdvvygefndgfLRSGLEAVLLSLspaelllgqplsKQTEKMLLAyagpasnvrvecasrdcfigGGALAEVMSLYEnmgedtlsnnedqnmdvpeqgnhrsaiegimnmPDLAVQALALTIRHLKQFGLERIMCLGAsfrslsgsmemTLSANTLQQLEVLrnnsngseyGTLLHIMNHTLTIYgsrllrrwvthplcdrnlISARLDAVSEIAESMgsyrtsesvgqhdeknsdvtivePQFYYILSSVLtslgrspdiqrgitrifhrtatpSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKeaadqgdlLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQlgmrnlefmSVSGIthlielpanfkvplnwakvnstkktiryhspEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCLHALATLsrnknfvrpvfvddhepvqihicsgrhpvldtilldnfvpndtnlhaereycqiitgpnmggkscYIRQVALIGIMAQvgsfvpassaeLHVLDGIytrmgasdsiQQGRSTFLEELNEASYILRNCTAQSLVIVDelgrgtsthdGVAIAYATLDYLLEHKKCMVLFVTHypkiadiktkftgsvgTYHVSYLTshkvmgpmdsksdqdvTYLYKVvpgvsessfgfkvaqlaqlppsciSRATVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQEqeaqenmpvspesfylGRVEASEDLISAYRDLFLNLkfathddnpaksFQFLKHARSIAKELIIR
MGKQKQQVISrffapksnqttasssassprppqqtpppKIAATVSFSPAKRKVvsslfppktpkkpklsphtlnpiptpssqtthnkkytPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTEtaaikahgpgkagpfgRGLSALYTKATLEAAEDVGGGEDGCGGESNYLVCVVDDDGNVGKIRngvfgdgfdVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGsyrtsesvgqhdeknsdvTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCLHALATLSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAevssrvqnrsakrdLLVKLSDqeqeaqenmpvspesfyLGRVEASEDLISAYRDLFLNLKFATHDDNPAKSFQFLKHARSIAKELIIR
MGKQKQQVISRFFAPKsnqttasssassprppqqtpppkiaatVSFSPAKRKVVSSLFppktpkkpkLSPHTLNPIPTPSSQTTHNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLeaaedvgggedgcggeSNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGleavllslspaelllGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFqaavqalaaldclhalatlSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQEQEAQENMPVSPESFYLGRVEASEDLISAYRDLFLNLKFATHDDNPAKSFQFLKHARSIAKELIIR
*********************************************************************************************QQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAEDVGGGEDGCGGESNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGGGALAEVMSLYE***************************EGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSE***********************VTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARA*********ELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCLHALATLSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMG*******QDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKL**************************************FYLGRVEASEDLISAYRDLFLNLKFATHDDNPAKSFQFLKHAR*I*******
*******************************************************************************************LEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAEDVGGGEDGCGGESNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYRE*V*SKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCLHALATLSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVM****SKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIA**************************************************EDLISAYRDLFLNLKFATHDDNPAKSFQFLKHARSIAKEL***
********ISRFFAPK**********************KIAATVSFSPAKRKVVSSLFPPKTPKKPKLSPHTLNPIPTPSSQTTHNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAEDVGGGEDGCGGESNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAES****************NSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEV*************LDSLINMCRKQLGMRNLEFMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCLHALATLSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKRDLLVKLS************SPESFYLGRVEASEDLISAYRDLFLNLKFATHDDNPAKSFQFLKHARSIAKELIIR
*****QQVISRFFAPK*************RPPQQTPPPKIAATVSF*************************************THNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAEDVGGGEDGCGGESNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCLHALATLSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVS********************QEAQENMPVSPESFYLGRVEASEDLISAYRDLFLNLKFATHDDNPAKSFQFLKHARSIAKELIIR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGKQKQQVISRFFAPKSNQTTASSSASSPRPPQQTPPPKIAATVSFSPAKRKVVSSLFPPKTPKKPKLSPHTLNPIPTPSSQTTHNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAEDVGGGEDGCGGESNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSExxxxxxxxxxxxxxxxxxxxxCRKQLGMRNLEFMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCLHALATLSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQEQEAQENMPVSPESFYLGRVEASEDLISAYRDLFLNLKFATHDDNPAKSFQFLKHARSIAKELIIR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1083 2.2.26 [Sep-21-2011]
O656071081 DNA mismatch repair prote yes no 0.968 0.970 0.642 0.0
P205851137 DNA mismatch repair prote yes no 0.825 0.786 0.377 1e-179
P137051091 DNA mismatch repair prote yes no 0.791 0.785 0.385 1e-175
A2R1F61119 DNA mismatch repair prote yes no 0.786 0.761 0.356 1e-162
Q2UT701111 DNA mismatch repair prote yes no 0.780 0.760 0.360 1e-161
Q5B6T11105 DNA mismatch repair prote yes no 0.783 0.767 0.358 1e-161
A6R7S11166 DNA mismatch repair prote N/A no 0.797 0.740 0.352 1e-160
A1DCB21117 DNA mismatch repair prote N/A no 0.761 0.738 0.371 1e-159
Q4WGB71123 DNA mismatch repair prote yes no 0.761 0.734 0.368 1e-159
B0YCF61123 DNA mismatch repair prote N/A no 0.761 0.734 0.368 1e-159
>sp|O65607|MSH3_ARATH DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana GN=MSH3 PE=1 SV=2 Back     alignment and function desciption
 Score = 1395 bits (3611), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 713/1110 (64%), Positives = 851/1110 (76%), Gaps = 61/1110 (5%)

Query: 1    MGKQKQQVISRFFAPKSNQTTASSSASSPRPPQQTPPPKIAATVSFSPAKRKVVSSLFPP 60
            MGKQKQQ ISRFFAPK    T      +P     TPPPKI+ATVSFSP+KRK++S     
Sbjct: 1    MGKQKQQTISRFFAPKPKSPT---HEPNPVAESSTPPPKISATVSFSPSKRKLLSDHLAA 57

Query: 61   KTPKKPKLSPHTLNPIPTPS------------------SQTTHNKKYTPLEQQVVELKTK 102
             +PKKPKLSPHT NP+P P+                   +T+ ++KYTPLEQQVVELK+K
Sbjct: 58   ASPKKPKLSPHTQNPVPDPNLHQRFLQRFLEPSPEEYVPETSSSRKYTPLEQQVVELKSK 117

Query: 103  YPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVNAGF 162
            YPDV+LM+EVGY++RFFGEDAE+AA+VLGIYAH+DHNFMTAS+PTFRLN HVRRLVNAG+
Sbjct: 118  YPDVVLMVEVGYRYRFFGEDAEIAARVLGIYAHMDHNFMTASVPTFRLNFHVRRLVNAGY 177

Query: 163  KVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAEDVGGGEDGCG---GESNYL 219
            K+GVVKQTETAAIK+HG  + GPF RGLSALYTKATLEAAED+ GG  G      +SN+L
Sbjct: 178  KIGVVKQTETAAIKSHGANRTGPFFRGLSALYTKATLEAAEDISGGCGGEEGFGSQSNFL 237

Query: 220  VCVVDDDGNVGKIRNGVFGDG----FDVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVL 275
            VCVVD+     ++++   G G    FDVR+GVV VEISTG+VVY EFND F+RSGLEAV+
Sbjct: 238  VCVVDE-----RVKSETLGCGIEMSFDVRVGVVGVEISTGEVVYEEFNDNFMRSGLEAVI 292

Query: 276  LSLSPAELLLGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGGGALAEVMSLYENMGE 335
            LSLSPAELLLGQPLS+QTEK L+A+AGP SNVRVE AS DCF  G A+ EV+SL E +  
Sbjct: 293  LSLSPAELLLGQPLSQQTEKFLVAHAGPTSNVRVERASLDCFSNGNAVDEVISLCEKISA 352

Query: 336  DTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFR 395
              L ++++  ++  E+G     +  IMNMP L VQALALT  HLKQFG ERI+  GASFR
Sbjct: 353  GNLEDDKEMKLEAAEKGMSCLTVHTIMNMPHLTVQALALTFCHLKQFGFERILYQGASFR 412

Query: 396  SLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDR 455
            SLS + EMTLSANTLQQLEV++NNS+GSE G+L H MNHTLT+YGSRLLR WVTHPLCDR
Sbjct: 413  SLSSNTEMTLSANTLQQLEVVKNNSDGSESGSLFHNMNHTLTVYGSRLLRHWVTHPLCDR 472

Query: 456  NLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDI 515
            NLISARLDAVSEI+  MGS+ +S+   +  E+ S+  IV P+FY +LSSVLT++ RS DI
Sbjct: 473  NLISARLDAVSEISACMGSHSSSQLSSELVEEGSERAIVSPEFYLVLSSVLTAMSRSSDI 532

Query: 516  QRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHI--DGEYREKVTSKTLHSALLKRLI 573
            QRGITRIFHRTA  +EFIAVM+AIL AGKQ+Q+L I  D E R  + S T+ S LL++LI
Sbjct: 533  QRGITRIFHRTAKATEFIAVMEAILLAGKQIQRLGIKQDSEMR-SMQSATVRSTLLRKLI 591

Query: 574  LTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSL 633
               SSP V+  A KLLS +NKEAA +GDLL+++I S+ QF E+A AR+AV   +E+LDS 
Sbjct: 592  SVISSPVVVDNAGKLLSALNKEAAVRGDLLDILITSSDQFPELAEARQAVLVIREKLDSS 651

Query: 634  INMCRKQLGMRNLEFMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQ 693
            I   RK+L +RNLEF+ VSGITHLIELP + KVP+NW KVNSTKKTIRYH PE++  LD+
Sbjct: 652  IASFRKKLAIRNLEFLQVSGITHLIELPVDSKVPMNWVKVNSTKKTIRYHPPEIVAGLDE 711

Query: 694  LALANEELTIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCLHALATLSRNKNFVRPVF 753
            LALA E L IV RA+WDSFLK F  YY +F+AAVQALAALDCLH+L+TLSRNKN+VRP F
Sbjct: 712  LALATEHLAIVNRASWDSFLKSFSRYYTDFKAAVQALAALDCLHSLSTLSRNKNYVRPEF 771

Query: 754  VDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVA 813
            VDD EPV+I+I SGRHPVL+TIL DNFVPNDT LHAE EYCQIITGPNMGGKSCYIRQVA
Sbjct: 772  VDDCEPVEINIQSGRHPVLETILQDNFVPNDTILHAEGEYCQIITGPNMGGKSCYIRQVA 831

Query: 814  LIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQS 873
            LI IMAQVGSFVPAS A+LHVLDG++TRMGASDSIQ GRSTFLEEL+EAS+I+R C+++S
Sbjct: 832  LISIMAQVGSFVPASFAKLHVLDGVFTRMGASDSIQHGRSTFLEELSEASHIIRTCSSRS 891

Query: 874  LVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHV 933
            LVI+DELGRGTSTHDGVAIAYATL +LL  K+C+VLFVTHYP+IA+I   F GSVGTYHV
Sbjct: 892  LVILDELGRGTSTHDGVAIAYATLQHLLAEKRCLVLFVTHYPEIAEISNGFPGSVGTYHV 951

Query: 934  SYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKL 993
            SYLT  K  G  D     DVTYLYK+V G+   SFGFKVAQLAQ+PPSCI RA  +AAKL
Sbjct: 952  SYLTLQKDKGSYD---HDDVTYLYKLVRGLCSRSFGFKVAQLAQIPPSCIRRAISMAAKL 1008

Query: 994  EAEVSSRVQNRSAKRDLLVKLSDQEQEAQENMPVSPESFYLGRVEASEDLISAYRDLFLN 1053
            EAEV +R +N              E E  E                +E+ ISA  DLF +
Sbjct: 1009 EAEVRARERNTRMG----------EPEGHEE------------PRGAEESISALGDLFAD 1046

Query: 1054 LKFATHDDNPAKSFQFLKHARSIAKELIIR 1083
            LKFA  +++P K+F+FLKHA  IA ++ ++
Sbjct: 1047 LKFALSEEDPWKAFEFLKHAWKIAGKIRLK 1076
Not known. Probable DNA-repair protein.
Arabidopsis thaliana (taxid: 3702)
>sp|P20585|MSH3_HUMAN DNA mismatch repair protein Msh3 OS=Homo sapiens GN=MSH3 PE=1 SV=4 Back     alignment and function description
>sp|P13705|MSH3_MOUSE DNA mismatch repair protein Msh3 OS=Mus musculus GN=Msh3 PE=2 SV=3 Back     alignment and function description
>sp|A2R1F6|MSH3_ASPNC DNA mismatch repair protein msh3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=msh3 PE=3 SV=2 Back     alignment and function description
>sp|Q2UT70|MSH3_ASPOR DNA mismatch repair protein msh3 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=msh3 PE=3 SV=1 Back     alignment and function description
>sp|Q5B6T1|MSH3_EMENI DNA mismatch repair protein msh3 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=msh3 PE=3 SV=2 Back     alignment and function description
>sp|A6R7S1|MSH3_AJECN DNA mismatch repair protein MSH3 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=MSH3 PE=3 SV=2 Back     alignment and function description
>sp|A1DCB2|MSH3_NEOFI DNA mismatch repair protein msh3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=msh3 PE=3 SV=1 Back     alignment and function description
>sp|Q4WGB7|MSH3_ASPFU DNA mismatch repair protein msh3 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=msh3 PE=3 SV=1 Back     alignment and function description
>sp|B0YCF6|MSH3_ASPFC DNA mismatch repair protein msh3 OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=msh3 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1083
2555394771100 DNA mismatch repair protein MSH3, putati 0.989 0.974 0.715 0.0
3594903751137 PREDICTED: DNA mismatch repair protein M 0.987 0.940 0.684 0.0
2241369861092 predicted protein [Populus trichocarpa] 0.961 0.953 0.676 0.0
3565759551070 PREDICTED: DNA mismatch repair protein M 0.966 0.978 0.668 0.0
306869201081 DNA mismatch repair protein Msh3 [Arabid 0.968 0.970 0.642 0.0
2977994421078 hypothetical protein ARALYDRAFT_492273 [ 0.969 0.974 0.646 0.0
4494461751094 PREDICTED: DNA mismatch repair protein M 0.978 0.968 0.631 0.0
72694041076 putative DNA mismatch repair protein [Ar 0.936 0.942 0.603 0.0
29807961076 putative DNA mismatch repair protein [Ar 0.936 0.942 0.602 0.0
449523049966 PREDICTED: DNA mismatch repair protein M 0.852 0.955 0.657 0.0
>gi|255539477|ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [Ricinus communis] gi|223549918|gb|EEF51405.1| DNA mismatch repair protein MSH3, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1542 bits (3993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 795/1111 (71%), Positives = 901/1111 (81%), Gaps = 39/1111 (3%)

Query: 1    MGKQKQQVISRFFAPKSNQTTASSSASSPRPPQQTPPPK----IAATVSFSPAKRKVVSS 56
            MGKQKQQVISRFFAPK   T+ S+  S    P  T P      I ATVSFSPAKRK++S+
Sbjct: 1    MGKQKQQVISRFFAPKPKTTSPSTPPSPSASPPPTTPTPSSPKITATVSFSPAKRKLLST 60

Query: 57   LFPPKTPKKPKLSPHTLNPIPTPSSQ---------------------TTHNKKYTPLEQQ 95
                 TPKKPKLS    N IPTPSS                      +++ +KYTPLE+Q
Sbjct: 61   HLT-STPKKPKLSD---NDIPTPSSSLHQKFLNKFLEPSSPEIPQPPSSYPRKYTPLEKQ 116

Query: 96   VVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFRLNVHVR 155
            V++LKTKYPDVLLMIEVGYK+RFFGEDAE+A +VLGIYAH DHNFMTASIPTFRLNVHVR
Sbjct: 117  VLDLKTKYPDVLLMIEVGYKYRFFGEDAEIAGRVLGIYAHKDHNFMTASIPTFRLNVHVR 176

Query: 156  RLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAEDVGGGEDGCGGE 215
            RLV+AG+KVGVVKQTETAAIKAHG  KAGPF RGLSALYTKATLEAAEDVGG E+GC GE
Sbjct: 177  RLVSAGYKVGVVKQTETAAIKAHGDNKAGPFCRGLSALYTKATLEAAEDVGGREEGCCGE 236

Query: 216  SNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVL 275
            SNYL CVVD       I NGV   GFD R+G VAVEISTGDVVYGEFNDGFLRSGLEAV+
Sbjct: 237  SNYLCCVVDKS-----IENGV-DSGFDTRIGFVAVEISTGDVVYGEFNDGFLRSGLEAVV 290

Query: 276  LSLSPAELLLGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGGGALAEVMSLYENMGE 335
            LSL PAELLLG PLSKQTEK+LLAYAGP+SNVRVE AS   F  GGALAEV+ LYENMGE
Sbjct: 291  LSLMPAELLLGDPLSKQTEKLLLAYAGPSSNVRVERASGHHFNDGGALAEVILLYENMGE 350

Query: 336  DTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFR 395
                ++E+Q M+   Q     AIEGIMNMPDLAVQALALTI HLKQFG E+I+ LGASFR
Sbjct: 351  HKAEDDENQMMERTHQDISYLAIEGIMNMPDLAVQALALTISHLKQFGFEQILRLGASFR 410

Query: 396  SLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDR 455
             L+ ++EM LSANTLQQLEVLRNNSNGS+ G+L +IMNHTLTI GSRLLR WVTHPLCDR
Sbjct: 411  PLTSNVEMNLSANTLQQLEVLRNNSNGSDSGSLFNIMNHTLTISGSRLLRHWVTHPLCDR 470

Query: 456  NLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDI 515
            N+ISARLDAVSEIAESMGSY+  ++ G  DE++SDV I++P FY++LS+VL  LGRSPDI
Sbjct: 471  NMISARLDAVSEIAESMGSYKALQNTGDFDEEDSDVAIIQPDFYHLLSTVLEMLGRSPDI 530

Query: 516  QRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREK-VTSKTLHSALLKRLIL 574
            QRGITRIFHRTAT SEFIAV+QAIL AGKQL++L I+ E   K V +KT+ S LLK+LIL
Sbjct: 531  QRGITRIFHRTATASEFIAVIQAILIAGKQLRRLQIEEEQNNKRVQAKTVRSVLLKKLIL 590

Query: 575  TASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLI 634
            T SS +V+G AAKLLST+NKEAA+ GDL NL++ISNGQF EVA + KAV  AKE+LDSLI
Sbjct: 591  TVSSSSVVGHAAKLLSTLNKEAAEHGDLTNLIVISNGQFPEVASSNKAVHLAKEKLDSLI 650

Query: 635  NMCRKQLGMRNLEFMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQL 694
            N+ RKQL MR+LEFMSVSG THLIELPA+ KVPLNW K+NSTKK IRYH PEVLTALDQL
Sbjct: 651  NLYRKQLKMRSLEFMSVSGTTHLIELPADVKVPLNWVKINSTKKMIRYHPPEVLTALDQL 710

Query: 695  ALANEELTIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCLHALATLSRNKNFVRPVFV 754
            ALANEEL +VCRAAWDSFL+ F  +YAEFQA +QALAALDCLH+LA LS+NKN+VRPVFV
Sbjct: 711  ALANEELMVVCRAAWDSFLRSFAKHYAEFQAVIQALAALDCLHSLAILSKNKNYVRPVFV 770

Query: 755  DDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVAL 814
            DD+EPVQIHI SGRHPVL+TILLDNFVPNDT LH + E+CQ++TGPNMGGKSCYIRQVAL
Sbjct: 771  DDNEPVQIHISSGRHPVLETILLDNFVPNDTCLHVDGEHCQVVTGPNMGGKSCYIRQVAL 830

Query: 815  IGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSL 874
            I +MAQVGSFVPASSA+LHVLDGIYTRMGASDSIQQGRSTFLEEL+E S+ILR CT  SL
Sbjct: 831  IVMMAQVGSFVPASSAKLHVLDGIYTRMGASDSIQQGRSTFLEELSETSHILRKCTGYSL 890

Query: 875  VIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVS 934
            VI+DELGRGTSTHDG AIAYATL +LLE K+CMVLFVTHYPKIA+I+T F  SVG YHVS
Sbjct: 891  VIIDELGRGTSTHDGEAIAYATLCHLLEQKRCMVLFVTHYPKIANIRTGFLNSVGAYHVS 950

Query: 935  YLTSHKVMGPMDSKSD-QDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKL 993
            YL + K     DSK D +DVTYLYK+VPGVSE SFGFKVAQLAQLP SCI RATV+AA+L
Sbjct: 951  YLMAEKNNDATDSKFDNEDVTYLYKLVPGVSERSFGFKVAQLAQLPTSCIERATVMAARL 1010

Query: 994  EAEVSSRVQNRSAKRDLLVKLS-DQEQEAQENMPVSPESFYLGRVEASEDLISAYRDLFL 1052
            E  +S R++NR  K  LL  L  DQ QE QE +P SP +F+  R+E  E+L + Y   FL
Sbjct: 1011 EEAISCRIRNRLDKSQLLKALQIDQLQEIQEKIPESPGNFHDKRIENYEELNNTYEKFFL 1070

Query: 1053 NLKFATHDDNPAKSFQFLKHARSIAKELIIR 1083
            N K A   D+ AKSFQ+L++ARSIA+ LI R
Sbjct: 1071 NFKSALLGDD-AKSFQYLENARSIARALIKR 1100

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359490375|ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224136986|ref|XP_002322465.1| predicted protein [Populus trichocarpa] gi|222869461|gb|EEF06592.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356575955|ref|XP_003556101.1| PREDICTED: DNA mismatch repair protein Msh3-like [Glycine max] Back     alignment and taxonomy information
>gi|30686920|ref|NP_194284.2| DNA mismatch repair protein Msh3 [Arabidopsis thaliana] gi|12644077|sp|O65607.2|MSH3_ARATH RecName: Full=DNA mismatch repair protein MSH3; Short=AtMSH3; AltName: Full=MutS protein homolog 3 gi|3319876|emb|CAA07684.1| Msh3 protein [Arabidopsis thaliana] gi|332659675|gb|AEE85075.1| DNA mismatch repair protein Msh3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297799442|ref|XP_002867605.1| hypothetical protein ARALYDRAFT_492273 [Arabidopsis lyrata subsp. lyrata] gi|297313441|gb|EFH43864.1| hypothetical protein ARALYDRAFT_492273 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449446175|ref|XP_004140847.1| PREDICTED: DNA mismatch repair protein MSH3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|7269404|emb|CAB81364.1| putative DNA mismatch repair protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|2980796|emb|CAA18172.1| putative DNA mismatch repair protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449523049|ref|XP_004168537.1| PREDICTED: DNA mismatch repair protein MSH3-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1083
TAIR|locus:21318291081 MSH3 "AT4G25540" [Arabidopsis 0.847 0.849 0.644 0.0
UNIPROTKB|Q0J8X3813 Os04g0682900 "Os04g0682900 pro 0.707 0.942 0.513 2.5e-191
UNIPROTKB|P205851137 MSH3 "DNA mismatch repair prot 0.447 0.426 0.359 6.5e-151
UNIPROTKB|F1P9S91058 MSH3 "Uncharacterized protein" 0.447 0.458 0.358 9.5e-150
UNIPROTKB|F1MLH11120 MSH3 "Uncharacterized protein" 0.447 0.433 0.351 2.5e-149
UNIPROTKB|F1LQM81105 Msh3 "Protein Msh3" [Rattus no 0.457 0.447 0.365 3.2e-149
MGI|MGI:1095191091 Msh3 "mutS homolog 3 (E. coli) 0.462 0.459 0.364 1.2e-147
ASPGD|ASPL00000127041105 AN3749 [Emericella nidulans (t 0.435 0.427 0.329 5.2e-134
UNIPROTKB|Q5B6T11105 msh3 "DNA mismatch repair prot 0.435 0.427 0.329 5.2e-134
UNIPROTKB|F1RF091126 MSH3 "Uncharacterized protein" 0.450 0.433 0.321 7.2e-131
TAIR|locus:2131829 MSH3 "AT4G25540" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2984 (1055.5 bits), Expect = 0., Sum P(3) = 0.
 Identities = 605/939 (64%), Positives = 718/939 (76%)

Query:    77 PTPSS---QTTHNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIY 133
             P+P     +T+ ++KYTPLEQQVVELK+KYPDV+LM+EVGY++RFFGEDAE+AA+VLGIY
Sbjct:    89 PSPEEYVPETSSSRKYTPLEQQVVELKSKYPDVVLMVEVGYRYRFFGEDAEIAARVLGIY 148

Query:   134 AHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSAL 193
             AH+DHNFMTAS+PTFRLN HVRRLVNAG+K+GVVKQTETAAIK+HG  + GPF RGLSAL
Sbjct:   149 AHMDHNFMTASVPTFRLNFHVRRLVNAGYKIGVVKQTETAAIKSHGANRTGPFFRGLSAL 208

Query:   194 YTKATLXXXXXXXXX---XXXXXXXSNYLVCVVDDDGNVGKIRNGVFGDG----FDVRLG 246
             YTKATL                   SN+LVCVVD+     ++++   G G    FDVR+G
Sbjct:   209 YTKATLEAAEDISGGCGGEEGFGSQSNFLVCVVDE-----RVKSETLGCGIEMSFDVRVG 263

Query:   247 VVAVEISTGDVVYGEFNDGFLRSGXXXXXXXXXXXXXXXGQPLSKQTEKMLLAYAGPASN 306
             VV VEISTG+VVY EFND F+RSG               GQPLS+QTEK L+A+AGP SN
Sbjct:   264 VVGVEISTGEVVYEEFNDNFMRSGLEAVILSLSPAELLLGQPLSQQTEKFLVAHAGPTSN 323

Query:   307 VRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPD 366
             VRVE AS DCF  G A+ EV+SL E +    L ++++  ++  E+G     +  IMNMP 
Sbjct:   324 VRVERASLDCFSNGNAVDEVISLCEKISAGNLEDDKEMKLEAAEKGMSCLTVHTIMNMPH 383

Query:   367 LAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYG 426
             L VQALALT  HLKQFG ERI+  GASFRSLS + EMTLSANTLQQLEV++NNS+GSE G
Sbjct:   384 LTVQALALTFCHLKQFGFERILYQGASFRSLSSNTEMTLSANTLQQLEVVKNNSDGSESG 443

Query:   427 TLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDE 486
             +L H MNHTLT+YGSRLLR WVTHPLCDRNLISARLDAVSEI+  MGS+ +S+   +  E
Sbjct:   444 SLFHNMNHTLTVYGSRLLRHWVTHPLCDRNLISARLDAVSEISACMGSHSSSQLSSELVE 503

Query:   487 KNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQL 546
             + S+  IV P+FY +LSSVLT++ RS DIQRGITRIFHRTA  +EFIAVM+AIL AGKQ+
Sbjct:   504 EGSERAIVSPEFYLVLSSVLTAMSRSSDIQRGITRIFHRTAKATEFIAVMEAILLAGKQI 563

Query:   547 QQLHI--DGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLN 604
             Q+L I  D E R  + S T+ S LL++LI   SSP V+  A KLLS +NKEAA +GDLL+
Sbjct:   564 QRLGIKQDSEMRS-MQSATVRSTLLRKLISVISSPVVVDNAGKLLSALNKEAAVRGDLLD 622

Query:   605 LMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANF 664
             ++I S+ QF E+A AR+AV   +E+LDS I   RK+L +RNLEF+ VSGITHLIELP + 
Sbjct:   623 ILITSSDQFPELAEARQAVLVIREKLDSSIASFRKKLAIRNLEFLQVSGITHLIELPVDS 682

Query:   665 KVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFX 724
             KVP+NW KVNSTKKTIRYH PE++  LD+LALA E L IV RA+WDSFLK F  YY +F 
Sbjct:   683 KVPMNWVKVNSTKKTIRYHPPEIVAGLDELALATEHLAIVNRASWDSFLKSFSRYYTDFK 742

Query:   725 XXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPND 784
                               SRNKN+VRP FVDD EPV+I+I SGRHPVL+TIL DNFVPND
Sbjct:   743 AAVQALAALDCLHSLSTLSRNKNYVRPEFVDDCEPVEINIQSGRHPVLETILQDNFVPND 802

Query:   785 TNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGA 844
             T LHAE EYCQIITGPNMGGKSCYIRQVALI IMAQVGSFVPAS A+LHVLDG++TRMGA
Sbjct:   803 TILHAEGEYCQIITGPNMGGKSCYIRQVALISIMAQVGSFVPASFAKLHVLDGVFTRMGA 862

Query:   845 SDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHK 904
             SDSIQ GRSTFLEEL+EAS+I+R C+++SLVI+DELGRGTSTHDGVAIAYATL +LL  K
Sbjct:   863 SDSIQHGRSTFLEELSEASHIIRTCSSRSLVILDELGRGTSTHDGVAIAYATLQHLLAEK 922

Query:   905 KCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVS 964
             +C+VLFVTHYP+IA+I   F GSVGTYHVSYLT  K  G  D     DVTYLYK+V G+ 
Sbjct:   923 RCLVLFVTHYPEIAEISNGFPGSVGTYHVSYLTLQKDKGSYDH---DDVTYLYKLVRGLC 979

Query:   965 ESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQN 1003
               SFGFKVAQLAQ+PPSCI RA  +AAKLEAEV +R +N
Sbjct:   980 SRSFGFKVAQLAQIPPSCIRRAISMAAKLEAEVRARERN 1018
GO:0000228 "nuclear chromosome" evidence=IBA
GO:0000404 "loop DNA binding" evidence=IBA
GO:0000710 "meiotic mismatch repair" evidence=IBA
GO:0005634 "nucleus" evidence=ISM
GO:0006200 "ATP catabolic process" evidence=IBA
GO:0006298 "mismatch repair" evidence=IEA;ISS
GO:0007131 "reciprocal meiotic recombination" evidence=RCA;IBA
GO:0008094 "DNA-dependent ATPase activity" evidence=IBA
GO:0032300 "mismatch repair complex" evidence=IBA
GO:0043570 "maintenance of DNA repeat elements" evidence=IBA
GO:0003684 "damaged DNA binding" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0030983 "mismatched DNA binding" evidence=IDA
GO:0007126 "meiosis" evidence=RCA
GO:0007129 "synapsis" evidence=RCA
GO:0009410 "response to xenobiotic stimulus" evidence=RCA
GO:0048522 "positive regulation of cellular process" evidence=RCA
UNIPROTKB|Q0J8X3 Os04g0682900 "Os04g0682900 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|P20585 MSH3 "DNA mismatch repair protein Msh3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P9S9 MSH3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MLH1 MSH3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1LQM8 Msh3 "Protein Msh3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:109519 Msh3 "mutS homolog 3 (E. coli)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ASPGD|ASPL0000012704 AN3749 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5B6T1 msh3 "DNA mismatch repair protein msh3" [Aspergillus nidulans FGSC A4 (taxid:227321)] Back     alignment and assigned GO terms
UNIPROTKB|F1RF09 MSH3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O65607MSH3_ARATHNo assigned EC number0.64230.96860.9703yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XV.3307.1
hypothetical protein (1087 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XIX.1944.1
annotation not avaliable (727 aa)
• • • • 0.763
eugene3.00120511
hypothetical protein (944 aa)
  • • ••0.757
eugene3.00140751
SubName- Full=Putative uncharacterized protein; (915 aa)
    • • 0.504
fgenesh4_pg.C_scaffold_15300000001
Predicted protein (342 aa)
  •     0.503
eugene3.07100002
annotation not avaliable (68 aa)
  •     0.438
estExt_Genewise1_v1.C_LG_I1046
proliferating cell nuclear antigen (PCNA); This protein is an auxiliary protein of DNA polymera [...] (268 aa)
    • • 0.428
estExt_Genewise1_v1.C_LG_IX3930
proliferating cell nuclear antigen (PCNA); This protein is an auxiliary protein of DNA polymera [...] (265 aa)
    • • 0.423

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1083
COG0249843 COG0249, MutS, Mismatch repair ATPase (MutS family 1e-176
PRK05399854 PRK05399, PRK05399, DNA mismatch repair protein Mu 1e-147
cd03287222 cd03287, ABC_MSH3_euk, ATP-binding cassette domain 1e-122
TIGR01070840 TIGR01070, mutS1, DNA mismatch repair protein MutS 1e-110
pfam00488235 pfam00488, MutS_V, MutS domain V 3e-98
smart00534185 smart00534, MUTSac, ATPase domain of DNA mismatch 6e-84
cd03284216 cd03284, ABC_MutS1, ATP-binding cassette domain of 1e-83
cd03243202 cd03243, ABC_MutS_homologs, ATP-binding cassette d 4e-75
cd03285222 cd03285, ABC_MSH2_euk, ATP-binding cassette domain 6e-74
cd03286218 cd03286, ABC_MSH6_euk, ATP-binding cassette domain 2e-69
smart00533308 smart00533, MUTSd, DNA-binding domain of DNA misma 9e-63
cd03281213 cd03281, ABC_MSH5_euk, ATP-binding cassette domain 3e-57
cd03282204 cd03282, ABC_MSH4_euk, ATP-binding cassette domain 7e-50
pfam05192290 pfam05192, MutS_III, MutS domain III 3e-43
cd03280200 cd03280, ABC_MutS2, ATP-binding cassette domain of 9e-31
pfam01624113 pfam01624, MutS_I, MutS domain I 1e-30
TIGR01069 771 TIGR01069, mutS2, MutS2 family protein 9e-29
cd03227162 cd03227, ABC_Class2, ATP-binding cassette domain o 2e-28
COG1193 753 COG1193, COG1193, Mismatch repair ATPase (MutS fam 6e-25
cd03283199 cd03283, ABC_MutS-like, ATP-binding cassette domai 2e-24
PRK00409 782 PRK00409, PRK00409, recombination and DNA strand e 2e-24
pfam0519092 pfam05190, MutS_IV, MutS family domain IV 8e-08
cd00267157 cd00267, ABC_ATPase, ATP-binding cassette transpor 4e-07
pfam05188133 pfam05188, MutS_II, MutS domain II 5e-06
>gnl|CDD|223327 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  537 bits (1385), Expect = e-176
 Identities = 278/916 (30%), Positives = 443/916 (48%), Gaps = 126/916 (13%)

Query: 87  KKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGI-YAHLDHNFMTASI 145
            K TP+ QQ +E+K +YPD LL   +G  +  F EDA++AA++L I      +  M A +
Sbjct: 4   AKLTPMMQQYLEIKAQYPDTLLFFRMGDFYELFFEDAKIAARLLDITLTKRGNIPM-AGV 62

Query: 146 PTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAEDV 205
           P   L+ ++ +L+  G+KV + +Q E  A         G   R +  + T  TL     +
Sbjct: 63  PYHALDYYLAKLIELGYKVAICEQLEDPA------EAKGVVERKVVRVVTPGTLTDEALL 116

Query: 206 GGGEDGCGGESNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFNDG 265
              E      +NYL  +  D                D ++G+  +++STG+    EF   
Sbjct: 117 SDRE------NNYLAALAIDR---------------DGKVGLAFIDLSTGEFFVSEFE-- 153

Query: 266 FLRSGLEAVLLSLSPAELLLGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGGGALAE 325
             R  L + L  L P ELLL + L   T   +                            
Sbjct: 154 --REKLLSELKRLQPKELLLSESLLSSTLAEIQKG------------------------- 186

Query: 326 VMSLYENMGEDTLSNNEDQNMDVPEQ-GNHRSAIEGIMNMPDLAVQALALTIRHLKQFGL 384
              L+      +  + +D    + E  G       G+++ P LA+ A    + +LK    
Sbjct: 187 ---LFVVRLPASFFDEDDAEEILSEYFGVRDLDGFGLISTP-LALSAAGALLSYLKDTQK 242

Query: 385 ERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLL 444
             +  +    R       M L A T + LE+  N     + G+L  +++ T+T  GSRLL
Sbjct: 243 TFLPHIQIIQRYDLEDY-MVLDAATRRNLELFSNLRGNGKKGSLFWLLDRTVTPMGSRLL 301

Query: 445 RRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSS 504
           +RW+  PL D+  I  RLDAV E+ +                   +  + E         
Sbjct: 302 KRWLLQPLLDKEEIEERLDAVEELKD-------------------NPELREK-------- 334

Query: 505 VLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTL 564
           +   L + PD++R ++R+    A+P + +  ++  L    ++ +L         ++S   
Sbjct: 335 LREMLKKVPDLERLLSRLSLGRASPRDLLR-LRDSLEKIPEIFKL---------LSSLKS 384

Query: 565 HSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQ 624
            S LL  L    S   +      L + +N++       +   II  G   E+   R  + 
Sbjct: 385 ESDLLLLLEDIESLDYLAELLELLETAINEDPP---LAVRDGIIKEGYNIELDELRDLLN 441

Query: 625 SAKEELDSLINMCRKQLGMRNL--EFMSVSGITHLIELPAN--FKVPLNWAKVNSTKKTI 680
           +AKE +  L    R++ G+++L  ++  V G  + IE+  +    VP ++ +  + K   
Sbjct: 442 NAKEWIAKLELEERERTGIKSLKIKYNKVYG--YYIEVTKSNAKLVPDDYIRRQTLKNAE 499

Query: 681 RYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCLHALA 740
           R+ +PE+    ++L  A E++  +    +D   ++   +  E QA  +ALA LD L +LA
Sbjct: 500 RFTTPELKELEEKLLDAEEKILALEYELFDELREKILAHINELQALAKALAELDVLSSLA 559

Query: 741 TLSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGP 800
            ++  +N+VRP FVD +    + I  GRHPV++ +L + FVPND +L   R    +ITGP
Sbjct: 560 EIAAEQNYVRPEFVDSN---DLEIKEGRHPVVEAVLDNGFVPNDIDLSGNRR-IILITGP 615

Query: 801 NMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELN 860
           NMGGKS Y+RQVALI I+AQ+GSFVPA  A + ++D I+TR+GA+D +  GRSTF+ E+ 
Sbjct: 616 NMGGKSTYLRQVALIVILAQIGSFVPAEKARIGIVDRIFTRIGAADDLASGRSTFMVEML 675

Query: 861 EASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADI 920
           E + IL N T +SLVI+DE+GRGTST+DG+AIA+A L+YL E   C  LF THY ++ ++
Sbjct: 676 ETANILDNATERSLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCRTLFATHYHELTEL 735

Query: 921 KTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPP 980
           + K    V  YH+S             +   D+T+LYKV PG+++ S+G  VA+LA LP 
Sbjct: 736 EEKLPQ-VKNYHMS-----------AVEEGGDITFLYKVKPGIADKSYGIHVAKLAGLPE 783

Query: 981 SCISRATVIAAKLEAE 996
             I RA  I A+LE E
Sbjct: 784 EVIERAREILAELEKE 799

Length = 843
>gnl|CDD|235444 PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional Back     alignment and domain information
>gnl|CDD|213254 cd03287, ABC_MSH3_euk, ATP-binding cassette domain of eukaryotic MutS3 homolog Back     alignment and domain information
>gnl|CDD|233259 TIGR01070, mutS1, DNA mismatch repair protein MutS Back     alignment and domain information
>gnl|CDD|215944 pfam00488, MutS_V, MutS domain V Back     alignment and domain information
>gnl|CDD|197777 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS family Back     alignment and domain information
>gnl|CDD|213251 cd03284, ABC_MutS1, ATP-binding cassette domain of MutS1 homolog Back     alignment and domain information
>gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS homologs Back     alignment and domain information
>gnl|CDD|213252 cd03285, ABC_MSH2_euk, ATP-binding cassette domain of eukaryotic MutS2 homolog Back     alignment and domain information
>gnl|CDD|213253 cd03286, ABC_MSH6_euk, ATP-binding cassette domain of eukaryotic MutS6 homolog Back     alignment and domain information
>gnl|CDD|214710 smart00533, MUTSd, DNA-binding domain of DNA mismatch repair MUTS family Back     alignment and domain information
>gnl|CDD|213248 cd03281, ABC_MSH5_euk, ATP-binding cassette domain of eukaryotic MutS5 homolog Back     alignment and domain information
>gnl|CDD|213249 cd03282, ABC_MSH4_euk, ATP-binding cassette domain of eukaryotic MutS4 homolog Back     alignment and domain information
>gnl|CDD|218489 pfam05192, MutS_III, MutS domain III Back     alignment and domain information
>gnl|CDD|213247 cd03280, ABC_MutS2, ATP-binding cassette domain of MutS2 Back     alignment and domain information
>gnl|CDD|216613 pfam01624, MutS_I, MutS domain I Back     alignment and domain information
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein Back     alignment and domain information
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins Back     alignment and domain information
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|213250 cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like homolog Back     alignment and domain information
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>gnl|CDD|218487 pfam05190, MutS_IV, MutS family domain IV Back     alignment and domain information
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain Back     alignment and domain information
>gnl|CDD|218486 pfam05188, MutS_II, MutS domain II Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1083
KOG02181070 consensus Mismatch repair MSH3 [Replication, recom 100.0
TIGR01070840 mutS1 DNA mismatch repair protein MutS. 100.0
COG0249843 MutS Mismatch repair ATPase (MutS family) [DNA rep 100.0
PRK05399854 DNA mismatch repair protein MutS; Provisional 100.0
KOG02171125 consensus Mismatch repair ATPase MSH6 (MutS family 100.0
KOG0219902 consensus Mismatch repair ATPase MSH2 (MutS family 100.0
KOG0220867 consensus Mismatch repair ATPase MSH4 (MutS family 100.0
PRK00409 782 recombination and DNA strand exchange inhibitor pr 100.0
KOG0221849 consensus Mismatch repair ATPase MSH5 (MutS family 100.0
TIGR01069 771 mutS2 MutS2 family protein. Function of MutS2 is u 100.0
PF00488235 MutS_V: MutS domain V C-terminus.; InterPro: IPR00 100.0
cd03287222 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS 100.0
cd03286218 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS 100.0
cd03285222 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS 100.0
COG1193 753 Mismatch repair ATPase (MutS family) [DNA replicat 100.0
cd03284216 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr 100.0
smart00533308 MUTSd DNA-binding domain of DNA mismatch repair MU 100.0
cd03282204 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS 100.0
cd03281213 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS 100.0
smart00534185 MUTSac ATPase domain of DNA mismatch repair MUTS f 100.0
cd03283199 ABC_MutS-like MutS-like homolog in eukaryotes. The 100.0
cd03280200 ABC_MutS2 MutS2 homologs in bacteria and eukaryote 100.0
cd03243202 ABC_MutS_homologs The MutS protein initiates DNA m 100.0
PF01624113 MutS_I: MutS domain I C-terminus.; InterPro: IPR00 99.97
PF05192204 MutS_III: MutS domain III C-terminus.; InterPro: I 99.91
COG1121254 ZnuC ABC-type Mn/Zn transport systems, ATPase comp 99.84
COG4152300 ABC-type uncharacterized transport system, ATPase 99.84
COG1120258 FepC ABC-type cobalamin/Fe3+-siderophores transpor 99.83
COG1131293 CcmA ABC-type multidrug transport system, ATPase c 99.83
COG1116248 TauB ABC-type nitrate/sulfonate/bicarbonate transp 99.83
cd03227162 ABC_Class2 ABC-type Class 2 contains systems invol 99.82
COG1126240 GlnQ ABC-type polar amino acid transport system, A 99.81
COG4555245 NatA ABC-type Na+ transport system, ATPase compone 99.81
COG1127263 Ttg2A ABC-type transport system involved in resist 99.81
COG1136226 SalX ABC-type antimicrobial peptide transport syst 99.8
PRK13537306 nodulation ABC transporter NodI; Provisional 99.78
PRK13536340 nodulation factor exporter subunit NodI; Provision 99.78
COG1137243 YhbG ABC-type (unclassified) transport system, ATP 99.77
cd03214180 ABC_Iron-Siderophores_B12_Hemin ABC transporters, 99.77
cd03255218 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of 99.76
COG2884223 FtsE Predicted ATPase involved in cell division [C 99.76
TIGR01188302 drrA daunorubicin resistance ABC transporter ATP-b 99.76
COG1125309 OpuBA ABC-type proline/glycine betaine transport s 99.76
cd03259213 ABC_Carb_Solutes_like ABC Carbohydrate and Solute 99.76
cd03265220 ABC_DrrA DrrA is the ATP-binding protein component 99.75
cd03293220 ABC_NrtD_SsuB_transporters NrtD and SsuB are the A 99.75
cd03225211 ABC_cobalt_CbiO_domain1 Domain I of the ABC compon 99.75
TIGR00960216 3a0501s02 Type II (General) Secretory Pathway (IIS 99.75
cd03226205 ABC_cobalt_CbiO_domain2 Domain II of the ABC compo 99.75
COG3638258 ABC-type phosphate/phosphonate transport system, A 99.75
TIGR03608206 L_ocin_972_ABC putative bacteriocin export ABC tra 99.75
cd03268208 ABC_BcrA_bacitracin_resist The BcrA subfamily repr 99.75
TIGR02673214 FtsE cell division ATP-binding protein FtsE. This 99.75
TIGR01288303 nodI ATP-binding ABC transporter family nodulation 99.75
TIGR01166190 cbiO cobalt transport protein ATP-binding subunit. 99.74
cd03261235 ABC_Org_Solvent_Resistant ABC (ATP-binding cassett 99.74
cd03301213 ABC_MalK_N The N-terminal ATPase domain of the mal 99.74
PRK11247257 ssuB aliphatic sulfonates transport ATP-binding su 99.74
cd03218232 ABC_YhbG The ABC transporters belonging to the Yhb 99.74
TIGR02211221 LolD_lipo_ex lipoprotein releasing system, ATP-bin 99.74
cd03262213 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- 99.74
cd03235213 ABC_Metallic_Cations ABC component of the metal-ty 99.74
cd03269210 ABC_putative_ATPase This subfamily is involved in 99.74
PRK11629233 lolD lipoprotein transporter ATP-binding subunit; 99.74
cd03256241 ABC_PhnC_transporter ABC-type phosphate/phosphonat 99.74
TIGR03522301 GldA_ABC_ATP gliding motility-associated ABC trans 99.74
COG3842352 PotA ABC-type spermidine/putrescine transport syst 99.73
cd03238176 ABC_UvrA The excision repair protein UvrA; Nucleot 99.73
COG1119257 ModF ABC-type molybdenum transport system, ATPase 99.73
cd03266218 ABC_NatA_sodium_exporter NatA is the ATPase compon 99.73
TIGR03864236 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, 99.73
COG1117253 PstB ABC-type phosphate transport system, ATPase c 99.73
PRK11248255 tauB taurine transporter ATP-binding subunit; Prov 99.73
TIGR02315243 ABC_phnC phosphonate ABC transporter, ATP-binding 99.73
cd03267236 ABC_NatA_like Similar in sequence to NatA, this is 99.73
PRK11264250 putative amino-acid ABC transporter ATP-binding pr 99.73
cd03219236 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans 99.73
PRK09536402 btuD corrinoid ABC transporter ATPase; Reviewed 99.73
cd03292214 ABC_FtsE_transporter FtsE is a hydrophilic nucleot 99.73
cd03216163 ABC_Carb_Monos_I This family represents the domain 99.73
PRK10584228 putative ABC transporter ATP-binding protein YbbA; 99.73
TIGR03410230 urea_trans_UrtE urea ABC transporter, ATP-binding 99.73
COG0411250 LivG ABC-type branched-chain amino acid transport 99.73
PRK13538204 cytochrome c biogenesis protein CcmA; Provisional 99.72
PRK11650356 ugpC glycerol-3-phosphate transporter ATP-binding 99.72
cd03296239 ABC_CysA_sulfate_importer Part of the ABC transpor 99.72
TIGR03265353 PhnT2 putative 2-aminoethylphosphonate ABC transpo 99.72
TIGR02314343 ABC_MetN D-methionine ABC transporter, ATP-binding 99.72
PRK13539207 cytochrome c biogenesis protein CcmA; Provisional 99.72
cd03294269 ABC_Pro_Gly_Bertaine This family comprises the gly 99.72
cd03224222 ABC_TM1139_LivF_branched LivF (TM1139) is part of 99.72
cd03246173 ABCC_Protease_Secretion This family represents the 99.72
cd03258233 ABC_MetN_methionine_transporter MetN (also known a 99.72
PRK11300255 livG leucine/isoleucine/valine transporter ATP-bin 99.72
PRK10247225 putative ABC transporter ATP-binding protein YbbL; 99.72
cd03230173 ABC_DR_subfamily_A This family of ATP-binding prot 99.72
PRK10908222 cell division protein FtsE; Provisional 99.72
PRK09493240 glnQ glutamine ABC transporter ATP-binding protein 99.72
PRK11432351 fbpC ferric transporter ATP-binding subunit; Provi 99.72
cd03231201 ABC_CcmA_heme_exporter CcmA, the ATP-binding compo 99.72
PRK09544251 znuC high-affinity zinc transporter ATPase; Review 99.72
TIGR01186363 proV glycine betaine/L-proline transport ATP bindi 99.72
TIGR03740223 galliderm_ABC gallidermin-class lantibiotic protec 99.72
PRK13637287 cbiO cobalt transporter ATP-binding subunit; Provi 99.72
PRK13638271 cbiO cobalt transporter ATP-binding subunit; Provi 99.72
cd03263220 ABC_subfamily_A The ABCA subfamily mediates the tr 99.71
cd03217200 ABC_FeS_Assembly ABC-type transport system involve 99.71
COG3839338 MalK ABC-type sugar transport systems, ATPase comp 99.71
cd03260227 ABC_PstB_phosphate_transporter Phosphate uptake is 99.71
PRK13644274 cbiO cobalt transporter ATP-binding subunit; Provi 99.71
PRK10895241 lipopolysaccharide ABC transporter ATP-binding pro 99.71
PRK13635279 cbiO cobalt transporter ATP-binding subunit; Provi 99.71
PRK11000369 maltose/maltodextrin transporter ATP-binding prote 99.71
PRK13540200 cytochrome c biogenesis protein CcmA; Provisional 99.71
PRK13647274 cbiO cobalt transporter ATP-binding subunit; Provi 99.71
TIGR03258362 PhnT 2-aminoethylphosphonate ABC transport system, 99.71
PRK13548258 hmuV hemin importer ATP-binding subunit; Provision 99.71
TIGR01189198 ccmA heme ABC exporter, ATP-binding protein CcmA. 99.71
PRK11153343 metN DL-methionine transporter ATP-binding subunit 99.71
PRK11614237 livF leucine/isoleucine/valine transporter ATP-bin 99.71
cd03264211 ABC_drug_resistance_like ABC-type multidrug transp 99.71
PRK11831269 putative ABC transporter ATP-binding protein YrbF; 99.71
TIGR01978243 sufC FeS assembly ATPase SufC. SufC is part of the 99.71
PRK10851353 sulfate/thiosulfate transporter subunit; Provision 99.71
PRK10253265 iron-enterobactin transporter ATP-binding protein; 99.71
PRK09452375 potA putrescine/spermidine ABC transporter ATPase 99.71
cd03228171 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein 99.71
PRK13543214 cytochrome c biogenesis protein CcmA; Provisional 99.7
PRK14250241 phosphate ABC transporter ATP-binding protein; Pro 99.7
cd03229178 ABC_Class3 This class is comprised of all BPD (Bin 99.7
cd03298211 ABC_ThiQ_thiamine_transporter ABC-type thiamine tr 99.7
cd03295242 ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin 99.7
cd03222177 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi 99.7
TIGR03005252 ectoine_ehuA ectoine/hydroxyectoine ABC transporte 99.7
PRK13650279 cbiO cobalt transporter ATP-binding subunit; Provi 99.7
cd03245220 ABCC_bacteriocin_exporters ABC-type bacteriocin ex 99.7
PRK09984262 phosphonate/organophosphate ester transporter subu 99.7
cd03257228 ABC_NikE_OppD_transporters The ABC transporter sub 99.7
PRK13633280 cobalt transporter ATP-binding subunit; Provisiona 99.7
PRK11124242 artP arginine transporter ATP-binding subunit; Pro 99.7
PRK13652277 cbiO cobalt transporter ATP-binding subunit; Provi 99.7
cd03220224 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo 99.7
cd03297214 ABC_ModC_molybdenum_transporter ModC is an ABC-typ 99.7
PRK10575265 iron-hydroxamate transporter ATP-binding subunit; 99.7
cd03213194 ABCG_EPDR ABCG transporters are involved in eye pi 99.7
cd03232192 ABC_PDR_domain2 The pleiotropic drug resistance-li 99.7
TIGR02982220 heterocyst_DevA ABC exporter ATP-binding subunit, 99.7
TIGR03411242 urea_trans_UrtD urea ABC transporter, ATP-binding 99.69
PRK13632271 cbiO cobalt transporter ATP-binding subunit; Provi 99.69
cd03223166 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass 99.69
PRK11607377 potG putrescine transporter ATP-binding subunit; P 99.69
PRK10619257 histidine/lysine/arginine/ornithine transporter su 99.69
PRK13641287 cbiO cobalt transporter ATP-binding subunit; Provi 99.69
COG4586325 ABC-type uncharacterized transport system, ATPase 99.69
COG0410237 LivF ABC-type branched-chain amino acid transport 99.69
PRK11231255 fecE iron-dicitrate transporter ATP-binding subuni 99.69
COG1135339 AbcC ABC-type metal ion transport system, ATPase c 99.69
PRK13640282 cbiO cobalt transporter ATP-binding subunit; Provi 99.69
TIGR03873256 F420-0_ABC_ATP proposed F420-0 ABC transporter, AT 99.69
PRK13636283 cbiO cobalt transporter ATP-binding subunit; Provi 99.69
cd03247178 ABCC_cytochrome_bd The CYD subfamily implicated in 99.69
TIGR00968237 3a0106s01 sulfate ABC transporter, ATP-binding pro 99.69
COG1124252 DppF ABC-type dipeptide/oligopeptide/nickel transp 99.69
PRK13651305 cobalt transporter ATP-binding subunit; Provisiona 99.69
COG1118345 CysA ABC-type sulfate/molybdate transport systems, 99.69
PRK13648269 cbiO cobalt transporter ATP-binding subunit; Provi 99.69
PRK13646286 cbiO cobalt transporter ATP-binding subunit; Provi 99.69
cd03250204 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. 99.68
PRK14268258 phosphate ABC transporter ATP-binding protein; Pro 99.68
cd03300232 ABC_PotA_N PotA is an ABC-type transporter and the 99.68
PRK14242253 phosphate transporter ATP-binding protein; Provisi 99.68
PRK15056272 manganese/iron transporter ATP-binding protein; Pr 99.68
PRK10070400 glycine betaine transporter ATP-binding subunit; P 99.68
COG1122235 CbiO ABC-type cobalt transport system, ATPase comp 99.68
TIGR00972247 3a0107s01c2 phosphate ABC transporter, ATP-binding 99.68
PRK13634290 cbiO cobalt transporter ATP-binding subunit; Provi 99.68
TIGR03415382 ABC_choXWV_ATP choline ABC transporter, ATP-bindin 99.68
TIGR02142354 modC_ABC molybdenum ABC transporter, ATP-binding p 99.68
TIGR02323253 CP_lyasePhnK phosphonate C-P lyase system protein 99.68
PRK11701258 phnK phosphonate C-P lyase system protein PhnK; Pr 99.68
PRK13541195 cytochrome c biogenesis protein CcmA; Provisional 99.68
PRK14245250 phosphate ABC transporter ATP-binding protein; Pro 99.68
PRK13639275 cbiO cobalt transporter ATP-binding subunit; Provi 99.68
PRK13649280 cbiO cobalt transporter ATP-binding subunit; Provi 99.67
PRK10938 490 putative molybdenum transport ATP-binding protein 99.67
TIGR02324224 CP_lyasePhnL phosphonate C-P lyase system protein 99.67
PRK15093330 antimicrobial peptide ABC transporter ATP-binding 99.67
COG4619223 ABC-type uncharacterized transport system, ATPase 99.67
PRK10418254 nikD nickel transporter ATP-binding protein NikD; 99.67
cd03215182 ABC_Carb_Monos_II This family represents domain II 99.67
PRK15439 510 autoinducer 2 ABC transporter ATP-binding protein 99.67
TIGR02769265 nickel_nikE nickel import ATP-binding protein NikE 99.67
PRK13643288 cbiO cobalt transporter ATP-binding subunit; Provi 99.67
PRK11022326 dppD dipeptide transporter ATP-binding subunit; Pr 99.67
TIGR01184230 ntrCD nitrate transport ATP-binding subunits C and 99.67
TIGR02770230 nickel_nikD nickel import ATP-binding protein NikD 99.67
PRK11144352 modC molybdate transporter ATP-binding protein; Pr 99.67
PRK15112267 antimicrobial peptide ABC system ATP-binding prote 99.67
PRK03695248 vitamin B12-transporter ATPase; Provisional 99.67
cd00267157 ABC_ATPase ABC (ATP-binding cassette) transporter 99.67
PRK10771232 thiQ thiamine transporter ATP-binding subunit; Pro 99.67
PRK10744260 pstB phosphate transporter ATP-binding protein; Pr 99.66
cd03251234 ABCC_MsbA MsbA is an essential ABC transporter, cl 99.66
PRK14248268 phosphate ABC transporter ATP-binding protein; Pro 99.66
cd03248226 ABCC_TAP TAP, the Transporter Associated with Anti 99.66
PRK13549 506 xylose transporter ATP-binding subunit; Provisiona 99.66
PRK13547272 hmuV hemin importer ATP-binding subunit; Provision 99.66
PRK14273254 phosphate ABC transporter ATP-binding protein; Pro 99.66
PRK10762 501 D-ribose transporter ATP binding protein; Provisio 99.66
PRK13645289 cbiO cobalt transporter ATP-binding subunit; Provi 99.66
cd03252237 ABCC_Hemolysin The ABC-transporter hemolysin B is 99.66
PRK09580248 sufC cysteine desulfurase ATPase component; Review 99.66
PRK14247250 phosphate ABC transporter ATP-binding protein; Pro 99.66
cd03244221 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. 99.66
PRK14235267 phosphate transporter ATP-binding protein; Provisi 99.66
cd03254229 ABCC_Glucan_exporter_like Glucan exporter ATP-bind 99.66
PRK14237267 phosphate transporter ATP-binding protein; Provisi 99.66
PRK14259269 phosphate ABC transporter ATP-binding protein; Pro 99.66
PRK09700 510 D-allose transporter ATP-binding protein; Provisio 99.66
PRK13642277 cbiO cobalt transporter ATP-binding subunit; Provi 99.66
PRK14275286 phosphate ABC transporter ATP-binding protein; Pro 99.66
TIGR01277213 thiQ thiamine ABC transporter, ATP-binding protein 99.66
PRK14241258 phosphate transporter ATP-binding protein; Provisi 99.66
cd03289275 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic 99.66
cd03237246 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o 99.66
PRK10419268 nikE nickel transporter ATP-binding protein NikE; 99.65
PRK14274259 phosphate ABC transporter ATP-binding protein; Pro 99.65
PRK14256252 phosphate ABC transporter ATP-binding protein; Pro 99.65
cd03234226 ABCG_White The White subfamily represents ABC tran 99.65
TIGR03269 520 met_CoM_red_A2 methyl coenzyme M reductase system, 99.65
PRK14262250 phosphate ABC transporter ATP-binding protein; Pro 99.65
cd03249238 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) 99.65
cd03221144 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is 99.65
PRK14269246 phosphate ABC transporter ATP-binding protein; Pro 99.65
PRK14244251 phosphate ABC transporter ATP-binding protein; Pro 99.65
PRK14251251 phosphate ABC transporter ATP-binding protein; Pro 99.65
CHL00131252 ycf16 sulfate ABC transporter protein; Validated 99.65
PRK14239252 phosphate transporter ATP-binding protein; Provisi 99.65
PRK13631320 cbiO cobalt transporter ATP-binding subunit; Provi 99.65
cd03299235 ABC_ModC_like Archeal protein closely related to M 99.64
PRK13545 549 tagH teichoic acids export protein ATP-binding sub 99.64
PRK14240250 phosphate transporter ATP-binding protein; Provisi 99.64
PRK15079331 oligopeptide ABC transporter ATP-binding protein O 99.64
cd03290218 ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec 99.64
PRK14265274 phosphate ABC transporter ATP-binding protein; Pro 99.64
PRK14254285 phosphate ABC transporter ATP-binding protein; Pro 99.64
PRK10982 491 galactose/methyl galaxtoside transporter ATP-bindi 99.64
PRK13546264 teichoic acids export protein ATP-binding subunit; 99.64
PRK14264305 phosphate ABC transporter ATP-binding protein; Pro 99.64
PRK14253249 phosphate ABC transporter ATP-binding protein; Pro 99.64
PRK14270251 phosphate ABC transporter ATP-binding protein; Pro 99.64
PRK14267253 phosphate ABC transporter ATP-binding protein; Pro 99.64
COG4133209 CcmA ABC-type transport system involved in cytochr 99.64
PRK14263261 phosphate ABC transporter ATP-binding protein; Pro 99.64
cd03253236 ABCC_ATM1_transporter ATM1 is an ABC transporter t 99.64
cd03236255 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o 99.64
PRK10938490 putative molybdenum transport ATP-binding protein 99.64
PRK15177213 Vi polysaccharide export ATP-binding protein VexC; 99.64
TIGR02633 500 xylG D-xylose ABC transporter, ATP-binding protein 99.64
COG4598256 HisP ABC-type histidine transport system, ATPase c 99.63
PRK14246257 phosphate ABC transporter ATP-binding protein; Pro 99.63
PRK11308327 dppF dipeptide transporter ATP-binding subunit; Pr 99.63
COG4604252 CeuD ABC-type enterochelin transport system, ATPas 99.63
PRK14255252 phosphate ABC transporter ATP-binding protein; Pro 99.63
PRK14261253 phosphate ABC transporter ATP-binding protein; Pro 99.63
COG4525259 TauB ABC-type taurine transport system, ATPase com 99.63
COG3840231 ThiQ ABC-type thiamine transport system, ATPase co 99.63
PRK14249251 phosphate ABC transporter ATP-binding protein; Pro 99.63
PRK11288 501 araG L-arabinose transporter ATP-binding protein; 99.63
cd03233202 ABC_PDR_domain1 The pleiotropic drug resistance (P 99.63
PRK09473330 oppD oligopeptide transporter ATP-binding componen 99.63
COG0396251 sufC Cysteine desulfurase activator ATPase [Posttr 99.63
PRK14260259 phosphate ABC transporter ATP-binding protein; Pro 99.62
PRK14258261 phosphate ABC transporter ATP-binding protein; Pro 99.62
PRK14238271 phosphate transporter ATP-binding protein; Provisi 99.62
PRK14271276 phosphate ABC transporter ATP-binding protein; Pro 99.62
PRK14272252 phosphate ABC transporter ATP-binding protein; Pro 99.62
PRK14243264 phosphate transporter ATP-binding protein; Provisi 99.62
cd03369207 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty 99.62
cd03291282 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic 99.62
PRK14252265 phosphate ABC transporter ATP-binding protein; Pro 99.61
TIGR012572272 rim_protein retinal-specific rim ABC transporter. 99.61
PRK14266250 phosphate ABC transporter ATP-binding protein; Pro 99.61
PRK13549506 xylose transporter ATP-binding subunit; Provisiona 99.61
COG4175386 ProV ABC-type proline/glycine betaine transport sy 99.61
PRK14236272 phosphate transporter ATP-binding protein; Provisi 99.61
PRK15064 530 ABC transporter ATP-binding protein; Provisional 99.6
COG1129 500 MglA ABC-type sugar transport system, ATPase compo 99.6
PRK13409590 putative ATPase RIL; Provisional 99.6
PRK15134529 microcin C ABC transporter ATP-binding protein Yej 99.6
PRK09700510 D-allose transporter ATP-binding protein; Provisio 99.6
PRK15134 529 microcin C ABC transporter ATP-binding protein Yej 99.6
PRK10762501 D-ribose transporter ATP binding protein; Provisio 99.6
PRK15439510 autoinducer 2 ABC transporter ATP-binding protein 99.6
TIGR02633500 xylG D-xylose ABC transporter, ATP-binding protein 99.6
TIGR03771223 anch_rpt_ABC anchored repeat-type ABC transporter, 99.59
TIGR03269520 met_CoM_red_A2 methyl coenzyme M reductase system, 99.59
PRK10636 638 putative ABC transporter ATP-binding protein; Prov 99.59
cd03288257 ABCC_SUR2 The SUR domain 2. The sulfonylurea recep 99.59
COG4181228 Predicted ABC-type transport system involved in ly 99.59
PRK10261 623 glutathione transporter ATP-binding protein; Provi 99.58
TIGR01257 2272 rim_protein retinal-specific rim ABC transporter. 99.58
PRK11288501 araG L-arabinose transporter ATP-binding protein; 99.58
PRK14257329 phosphate ABC transporter ATP-binding protein; Pro 99.58
COG4559259 ABC-type hemin transport system, ATPase component 99.57
PRK10982491 galactose/methyl galaxtoside transporter ATP-bindi 99.57
COG0444316 DppD ABC-type dipeptide/oligopeptide/nickel transp 99.57
PRK10636638 putative ABC transporter ATP-binding protein; Prov 99.57
PRK11819 556 putative ABC transporter ATP-binding protein; Revi 99.57
PRK10261623 glutathione transporter ATP-binding protein; Provi 99.57
COG4107258 PhnK ABC-type phosphonate transport system, ATPase 99.57
PRK13409 590 putative ATPase RIL; Provisional 99.57
cd03270226 ABC_UvrA_I The excision repair protein UvrA domain 99.56
PRK15064530 ABC transporter ATP-binding protein; Provisional 99.56
PLN03211 659 ABC transporter G-25; Provisional 99.56
TIGR03719552 ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa 99.55
PRK11819556 putative ABC transporter ATP-binding protein; Revi 99.55
PRK11147635 ABC transporter ATPase component; Reviewed 99.55
cd03278197 ABC_SMC_barmotin Barmotin is a tight junction-asso 99.55
COG4674249 Uncharacterized ABC-type transport system, ATPase 99.54
PRK11147 635 ABC transporter ATPase component; Reviewed 99.54
COG3845 501 ABC-type uncharacterized transport systems, ATPase 99.54
COG1134249 TagH ABC-type polysaccharide/polyol phosphate tran 99.54
COG1123 539 ATPase components of various ABC-type transport sy 99.53
TIGR03719 552 ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa 99.53
COG0488 530 Uup ATPase components of ABC transporters with dup 99.53
PLN03073718 ABC transporter F family; Provisional 99.53
TIGR01842544 type_I_sec_PrtD type I secretion system ABC transp 99.52
PRK13657588 cyclic beta-1,2-glucan ABC transporter; Provisiona 99.52
COG0488530 Uup ATPase components of ABC transporters with dup 99.51
TIGR00954659 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA 99.51
PRK10522547 multidrug transporter membrane component/ATP-bindi 99.51
COG4161242 ArtP ABC-type arginine transport system, ATPase co 99.51
PRK10535 648 macrolide transporter ATP-binding /permease protei 99.51
PRK11176582 lipid transporter ATP-binding/permease protein; Pr 99.5
COG2274709 SunT ABC-type bacteriocin/lantibiotic exporters, c 99.49
PLN03073 718 ABC transporter F family; Provisional 99.49
COG4608268 AppF ABC-type oligopeptide transport system, ATPas 99.49
KOG0057591 consensus Mitochondrial Fe/S cluster exporter, ABC 99.49
TIGR02857529 CydD thiol reductant ABC exporter, CydD subunit. U 99.48
COG1101263 PhnK ABC-type uncharacterized transport system, AT 99.48
TIGR02203571 MsbA_lipidA lipid A export permease/ATP-binding pr 99.48
PRK10789569 putative multidrug transporter membrane\ATP-bindin 99.48
TIGR03375694 type_I_sec_LssB type I secretion system ATPase, Ls 99.48
TIGR02204576 MsbA_rel ABC transporter, permease/ATP-binding pro 99.47
PRK10790592 putative multidrug transporter membrane\ATP-bindin 99.47
TIGR01192585 chvA glucan exporter ATP-binding protein. This mod 99.47
TIGR01194555 cyc_pep_trnsptr cyclic peptide transporter. This m 99.47
PRK11174588 cysteine/glutathione ABC transporter membrane/ATP- 99.47
COG4778235 PhnL ABC-type phosphonate transport system, ATPase 99.47
cd03274212 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein 99.47
PRK11160574 cysteine/glutathione ABC transporter membrane/ATP- 99.46
TIGR00955 617 3a01204 The Eye Pigment Precursor Transporter (EPP 99.46
KOG0059885 consensus Lipid exporter ABCA1 and related protein 99.46
COG4988559 CydD ABC-type transport system involved in cytochr 99.45
PLN03140 1470 ABC transporter G family member; Provisional 99.45
TIGR03797686 NHPM_micro_ABC2 NHPM bacteriocin system ABC transp 99.45
COG4148352 ModC ABC-type molybdate transport system, ATPase c 99.44
cd03271261 ABC_UvrA_II The excision repair protein UvrA domai 99.44
TIGR01187325 potA spermidine/putrescine ABC transporter ATP-bin 99.44
TIGR03796710 NHPM_micro_ABC1 NHPM bacteriocin system ABC transp 99.44
PF05188137 MutS_II: MutS domain II; InterPro: IPR007860 Misma 99.43
COG4136213 ABC-type uncharacterized transport system, ATPase 99.43
TIGR01846694 type_I_sec_HlyB type I secretion system ABC transp 99.43
COG1123539 ATPase components of various ABC-type transport sy 99.42
TIGR00956 1394 3a01205 Pleiotropic Drug Resistance (PDR) Family p 99.42
TIGR00958711 3a01208 Conjugate Transporter-2 (CT2) Family prote 99.41
TIGR01193708 bacteriocin_ABC ABC-type bacteriocin transporter. 99.41
TIGR02868529 CydC thiol reductant ABC exporter, CydC subunit. T 99.4
PTZ00265 1466 multidrug resistance protein (mdr1); Provisional 99.4
cd03279213 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex 99.39
KOG0927614 consensus Predicted transporter (ABC superfamily) 99.39
KOG0062 582 consensus ATPase component of ABC transporters wit 99.39
COG4987573 CydC ABC-type transport system involved in cytochr 99.38
cd03272243 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein 99.38
COG4618580 ArpD ABC-type protease/lipase transport system, AT 99.38
PTZ00243 1560 ABC transporter; Provisional 99.38
COG4138248 BtuD ABC-type cobalamin transport system, ATPase c 99.35
TIGR01271 1490 CFTR_protein cystic fibrosis transmembrane conduct 99.34
TIGR00956 1394 3a01205 Pleiotropic Drug Resistance (PDR) Family p 99.34
cd03240204 ABC_Rad50 The catalytic domains of Rad50 are simil 99.33
PLN03140 1470 ABC transporter G family member; Provisional 99.33
KOG0061 613 consensus Transporter, ABC superfamily (Breast can 99.32
COG1132567 MdlB ABC-type multidrug transport system, ATPase a 99.3
cd03276198 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein 99.29
PLN03232 1495 ABC transporter C family member; Provisional 99.27
cd03275247 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein 99.26
PTZ002651466 multidrug resistance protein (mdr1); Provisional 99.26
TIGR00957 1522 MRP_assoc_pro multi drug resistance-associated pro 99.25
PLN03130 1622 ABC transporter C family member; Provisional 99.25
PF00005137 ABC_tran: ABC transporter This structure is on hol 99.25
cd03273251 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein 99.24
PLN032321495 ABC transporter C family member; Provisional 99.22
TIGR012711490 CFTR_protein cystic fibrosis transmembrane conduct 99.22
KOG0927 614 consensus Predicted transporter (ABC superfamily) 99.21
PLN031301622 ABC transporter C family member; Provisional 99.21
cd03239178 ABC_SMC_head The structural maintenance of chromos 99.21
KOG0055 1228 consensus Multidrug/pheromone exporter, ABC superf 99.19
TIGR009571522 MRP_assoc_pro multi drug resistance-associated pro 99.19
PTZ002431560 ABC transporter; Provisional 99.18
PF0519092 MutS_IV: MutS family domain IV C-terminus.; InterP 99.18
KOG0056790 consensus Heavy metal exporter HMT1, ABC superfami 99.16
COG2401593 ABC-type ATPase fused to a predicted acetyltransfe 99.14
KOG0058716 consensus Peptide exporter, ABC superfamily [Intra 99.14
TIGR00630924 uvra excinuclease ABC, A subunit. This family is b 99.13
PRK00635 1809 excinuclease ABC subunit A; Provisional 99.13
COG4172534 ABC-type uncharacterized transport system, duplica 99.13
cd03277213 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein 99.12
PRK00349943 uvrA excinuclease ABC subunit A; Reviewed 99.1
KOG0066807 consensus eIF2-interacting protein ABC50 (ABC supe 99.09
COG4178604 ABC-type uncharacterized transport system, permeas 99.08
COG1245591 Predicted ATPase, RNase L inhibitor (RLI) homolog 99.07
COG4615546 PvdE ABC-type siderophore export system, fused ATP 99.07
COG4172 534 ABC-type uncharacterized transport system, duplica 99.03
KOG0064728 consensus Peroxisomal long-chain acyl-CoA transpor 98.99
KOG2355291 consensus Predicted ABC-type transport, ATPase com 98.96
KOG0065 1391 consensus Pleiotropic drug resistance proteins (PD 98.95
COG1245 591 Predicted ATPase, RNase L inhibitor (RLI) homolog 98.94
KOG00551228 consensus Multidrug/pheromone exporter, ABC superf 98.87
COG4167267 SapF ABC-type antimicrobial peptide transport syst 98.85
KOG0054 1381 consensus Multidrug resistance-associated protein/ 98.83
COG3910233 Predicted ATPase [General function prediction only 98.82
cd03241276 ABC_RecN RecN ATPase involved in DNA repair; ABC ( 98.8
KOG0060659 consensus Long-chain acyl-CoA transporter, ABC sup 98.77
COG1129500 MglA ABC-type sugar transport system, ATPase compo 98.72
COG5265497 ATM1 ABC-type transport system involved in Fe-S cl 98.7
COG0178935 UvrA Excinuclease ATPase subunit [DNA replication, 98.67
COG4170330 SapD ABC-type antimicrobial peptide transport syst 98.67
PRK006351809 excinuclease ABC subunit A; Provisional 98.62
KOG0066 807 consensus eIF2-interacting protein ABC50 (ABC supe 98.55
KOG0062582 consensus ATPase component of ABC transporters wit 98.52
PF02463220 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: 98.5
KOG00541381 consensus Multidrug resistance-associated protein/ 98.5
TIGR02858270 spore_III_AA stage III sporulation protein AA. Mem 98.48
PRK08533230 flagellar accessory protein FlaH; Reviewed 98.42
PF13304303 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T 98.28
cd03242270 ABC_RecF RecF is a recombinational DNA repair ATPa 98.18
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 98.1
cd01124187 KaiC KaiC is a circadian clock protein primarily f 98.05
PRK06067234 flagellar accessory protein FlaH; Validated 98.05
PRK13695174 putative NTPase; Provisional 98.03
smart00382148 AAA ATPases associated with a variety of cellular 97.96
cd00820107 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC 97.88
TIGR02788308 VirB11 P-type DNA transfer ATPase VirB11. The VirB 97.85
TIGR00630 924 uvra excinuclease ABC, A subunit. This family is b 97.84
KOG0063592 consensus RNAse L inhibitor, ABC superfamily [RNA 97.81
PRK00349 943 uvrA excinuclease ABC subunit A; Reviewed 97.79
cd01131198 PilT Pilus retraction ATPase PilT. PilT is a nucle 97.78
PRK09183259 transposase/IS protein; Provisional 97.74
KOG0065 1391 consensus Pleiotropic drug resistance proteins (PD 97.65
PRK07721438 fliI flagellum-specific ATP synthase; Validated 97.63
PRK06995484 flhF flagellar biosynthesis regulator FlhF; Valida 97.63
PRK04296190 thymidine kinase; Provisional 97.59
COG3845501 ABC-type uncharacterized transport systems, ATPase 97.56
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 97.56
PF1355562 AAA_29: P-loop containing region of AAA domain 97.48
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 97.47
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 97.45
PRK14723 767 flhF flagellar biosynthesis regulator FlhF; Provis 97.44
PRK06793432 fliI flagellum-specific ATP synthase; Validated 97.42
TIGR03238 504 dnd_assoc_3 dnd system-associated protein 3. cereu 97.37
KOG0063 592 consensus RNAse L inhibitor, ABC superfamily [RNA 97.3
PRK10869553 recombination and repair protein; Provisional 97.3
PF00004132 AAA: ATPase family associated with various cellula 97.27
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 97.27
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 97.26
TIGR01420343 pilT_fam pilus retraction protein PilT. This model 97.25
PRK06526254 transposase; Provisional 97.24
cd01125239 repA Hexameric Replicative Helicase RepA. RepA is 97.24
cd01130186 VirB11-like_ATPase Type IV secretory pathway compo 97.22
TIGR03881229 KaiC_arch_4 KaiC domain protein, PAE1156 family. M 97.21
PRK06893229 DNA replication initiation factor; Validated 97.19
TIGR00634563 recN DNA repair protein RecN. All proteins in this 97.16
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 97.16
cd01123235 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r 97.15
PLN03210 1153 Resistant to P. syringae 6; Provisional 97.14
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 97.14
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 97.13
PRK07952244 DNA replication protein DnaC; Validated 97.12
PRK06921266 hypothetical protein; Provisional 97.11
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 97.08
TIGR00416454 sms DNA repair protein RadA. The gene protuct code 97.05
PRK14088440 dnaA chromosomal replication initiation protein; P 97.05
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 97.04
PRK11823446 DNA repair protein RadA; Provisional 97.0
cd01393226 recA_like RecA is a bacterial enzyme which has rol 96.99
TIGR03880224 KaiC_arch_3 KaiC domain protein, AF_0351 family. T 96.98
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 96.98
TIGR02237209 recomb_radB DNA repair and recombination protein R 96.98
COG3854308 SpoIIIAA ncharacterized protein conserved in bacte 96.97
cd01128249 rho_factor Transcription termination factor rho is 96.93
PF13481193 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. 96.91
PRK08181269 transposase; Validated 96.88
TIGR006181042 sbcc exonuclease SbcC. This family is based on the 96.86
PRK12377248 putative replication protein; Provisional 96.84
TIGR00767415 rho transcription termination factor Rho. Members 96.81
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 96.79
PRK03918880 chromosome segregation protein; Provisional 96.78
PF13173128 AAA_14: AAA domain 96.76
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 96.76
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=5.1e-162  Score=1362.79  Aligned_cols=866  Identities=45%  Similarity=0.693  Sum_probs=751.8

Q ss_pred             CCCCCHHHHHHHHHHhhCCCeEEEEEeCcEEEEecHHHHHHHHHhCccccCCCCceeccccccChHHHHHHHHHcCCEEE
Q 001405           86 NKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVNAGFKVG  165 (1083)
Q Consensus        86 ~~~~TP~~~Qy~~iK~~~~D~iL~fr~G~FYElf~~DA~~aa~~L~i~~~~~~~~~~aG~P~~~l~~~~~~Lv~~GykVa  165 (1083)
                      ..+|||++|||.++|.+|+|+||+++|||.|+|||+||++|||+|||+++.++||+.|+||.++++.|++|||++|||||
T Consensus       159 ks~yTPLeqQ~~elK~~h~d~VL~ievGYkyRfFgeDAeiasrvLgIych~dhnFmtaS~P~~Rl~vHleRLv~~g~KVa  238 (1070)
T KOG0218|consen  159 KSKYTPLEQQVKELKMHHRDKVLVIEVGYKYRFFGEDAEIASRVLGIYCHNDHNFMTASFPDVRLNVHLERLVHHGLKVA  238 (1070)
T ss_pred             ccccCcHHHHHHHHHhhCCceEEEEEecceEEeecccHHHHHHhhceEEEeccceeeccCCcchhhHHHHHHHhcCceEE
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecccchHHhcCCCCCCCCeeecceeecccceeecccc-cCCCCCCCCCCCceEEEEEeecCCCcccccCccCCCccce
Q 001405          166 VVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAED-VGGGEDGCGGESNYLVCVVDDDGNVGKIRNGVFGDGFDVR  244 (1083)
Q Consensus       166 iveQ~Et~~~k~~~~~k~~~v~R~v~~v~TpGT~~~~~~-l~~~~~~~~~~~~yLlaI~e~~~~~~~~~~~~~~~~~~~~  244 (1083)
                      ||+||||++.|++|.+++++|.|+|++|||+||+.++.. +-..+++.+..++|++|+.++..++.    ..   .+.++
T Consensus       239 VVkQtETAAiKs~gasRsslF~RklsavyTKaTl~eds~~~~r~e~~~~~~ssfllcv~dn~~ksk----~k---sg~v~  311 (1070)
T KOG0218|consen  239 VVKQTETAAIKSHGASRSSLFERKLSAVYTKATLGEDSTFVLRGERILGDTSSFLLCVRDNVHKSK----EK---SGVVK  311 (1070)
T ss_pred             EEeehhhHHHHhcCCcccchHHHHHHHHhhhhhhccccccccchhhhcCCcceEEEEEehhhhhhh----hh---cCceE
Confidence            999999999999998889999999999999999986532 21224555678999999997543311    11   24679


Q ss_pred             EEEEEEEcccCcEEEEEecCchhHHHHHHHHhccCccEEEeCCCCChHHHHHHHHhcCCCCcceeeecCccccccchhHH
Q 001405          245 LGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGGGALA  324 (1083)
Q Consensus       245 iGIa~vDvsTGe~~~~~f~D~~~~~~L~t~L~~~~P~EILl~~~ls~~~~k~l~~~~~~~~~~~v~~~~~~~F~~~~~~~  324 (1083)
                      ||+..|+++||++++++|.|+..+++|++.|..++|.|+|++.+++.++.+++.+     .+++++.....+|+.++++.
T Consensus       312 vgligVqlstGevVydeFqdnf~rseLqtrisslqP~ElLl~~~ls~qt~all~~-----~~Vsve~~~~rv~r~~naV~  386 (1070)
T KOG0218|consen  312 VGLIGVQLSTGEVVYDEFQDNFARSELQTRISSLQPIELLLNTDLSPQTVALLFK-----DNVSVELIHKRVYRLENAVV  386 (1070)
T ss_pred             EEEEEEecCCCcEehHhhhhhHHHHHHHHHHhccCcceeecCCCCcHHHHHHHHh-----cccchhhhhhhhhhchhHHH
Confidence            9999999999999999999999999999999999999999999999999988875     25666666666677666555


Q ss_pred             HHHHHhhcccCCccCcCcccCCCccccCCCcchhhhccCCcHHHHHH-HHHHHHHHHHhccchhhccCCCceecCCCCeE
Q 001405          325 EVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQA-LALTIRHLKQFGLERIMCLGASFRSLSGSMEM  403 (1083)
Q Consensus       325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~a~~A-l~all~YL~~~~~~~~l~~~~~~~~~~~~~~M  403 (1083)
                      ...++......+-  ...+.+++..      .-+..+++++.+.+.| +++++.||+++++++++..++-..+|....+|
T Consensus       387 q~ikla~e~~q~f--~~~k~~l~gs------~ii~li~nl~~psvic~la~~is~lkefnlE~~l~~psf~s~~ss~e~M  458 (1070)
T KOG0218|consen  387 QAIKLANEKIQNF--EDDKEMLEGS------EIICLIMNLSHPSVICLLAKLISHLKEFNLEQVLLIPSFYSPFSSKEHM  458 (1070)
T ss_pred             HHHHHHHHHHhhh--hhhhhhhhhh------hhhhhhhcCCCchHHHHHHHHHHHHHHhchHHheecccccCccccccee
Confidence            4444432211100  0011111111      1234577888665555 99999999999999988776333466666779


Q ss_pred             EeCHhhHhhccceeecCCCCccccHhhhhcccCCChhHHHHHHHhhCcCCChHHHHHHHHHHHHHHHhcCCccccccccc
Q 001405          404 TLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQ  483 (1083)
Q Consensus       404 ~LD~~Tl~nLEI~~n~~dgs~~gSL~~~Ln~T~T~~G~RLLR~WL~~PL~d~~~I~~RlDaVe~L~~~~~~~~~~~~~~~  483 (1083)
                      .|+++|+++||||.|++||+.+|||||+||||.|.+|.|+||+|+++||+|...|++|+|||+++..+.           
T Consensus       459 tls~ntLq~Leif~nqtd~~~kGSLfwvldhT~TsfG~RmLr~WvtkPLvd~~~I~eRLDAVeeitshs-----------  527 (1070)
T KOG0218|consen  459 TLSPNTLQSLEIFTNQTDGSEKGSLFWVLDHTRTSFGLRMLREWVTKPLVDVHQIEERLDAVEEITSHS-----------  527 (1070)
T ss_pred             eechhhhhceeeeeecCCCCcccceEEEeccchhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcc-----------
Confidence            999999999999999999999999999999999999999999999999999999999999999994321           


Q ss_pred             cCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHHHHhhcccc-hhhhhh
Q 001405          484 HDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATP-SEFIAVMQAILYAGKQLQQLHIDGEY-REKVTS  561 (1083)
Q Consensus       484 ~~~~~~~~~~~~~~~~~ll~~l~~~L~~i~DlERll~ri~~~~~~~-~d~~~l~~~l~~~~~~l~~l~~~~~~-~~~~~~  561 (1083)
                                   +....+++++..|.+.|||+|.|+||++++++| ++|..+++++..+...++.+....+. ......
T Consensus       528 -------------snS~vf~si~~~l~rlpDl~rgL~rIy~~tCtp~~eff~vlk~iy~a~s~fq~~~~~~~~~~~s~~~  594 (1070)
T KOG0218|consen  528 -------------SNSIVFESINQMLNRLPDLLRGLNRIYYGTCTPRKEFFFVLKQIYSAVSHFQMHQSYLEHFKSSDGR  594 (1070)
T ss_pred             -------------cchHHHHHHHHHHHhCcHhHhhHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccc
Confidence                         111478899999999999999999999999999 89999999999888888765322211 112233


Q ss_pred             chhhHHHHHHHHHhcCCchhhhhHHHHHHHHHHHhhhccCcccccccCCCCCHHHHHHHHHHHHH------HHHHHHHHH
Q 001405          562 KTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSA------KEELDSLIN  635 (1083)
Q Consensus       562 ~~~~s~lL~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~i~~g~~~eLd~~~~~~~~~------~~~l~~~l~  635 (1083)
                      ...+|+||++++..++.+....++..++.++|..++..|+..+.+.--.+ +|.+++.++.+..+      ...++..++
T Consensus       595 s~~qS~LLrrlisel~~p~~~s~~~hfL~mln~~aa~~gnk~d~fkd~sn-fpl~~e~~di~~virE~~ms~~~~~~hLa  673 (1070)
T KOG0218|consen  595 SGKQSPLLRRLISELNEPLSTSQLPHFLTMLNVSAAMEGNKDDQFKDFSN-FPLYDESEDIIKVIRESEMSRSQLKEHLA  673 (1070)
T ss_pred             chhccHHHHHHHHHhcCccccccHHHHHHHhhHHHHhhCChHHhhhhhcc-CcchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999998877777788899999999999988887666654333 56666555433333      234566999


Q ss_pred             HHHHHhCCCcceeeEecCceEEEEcccC--CCCCCcEEEeeecCCeEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001405          636 MCRKQLGMRNLEFMSVSGITHLIELPAN--FKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFL  713 (1083)
Q Consensus       636 ~~~~~~~~~~~~~~~~~~~~~~iev~~~--~~~p~~~~~~~~~~~~~r~~~~e~~~l~~~l~~~~~~~~~~~~~~~~~l~  713 (1083)
                      ++|+.++.|+++|..++|..|+|||+..  .++|.+|+++++++...||+||++.++..++..+++.+...+...|+.|+
T Consensus       674 eiRk~Lk~pnlef~~vsgv~flIEvkns~~kkiP~dWiKvnsTk~vsRfhtP~iq~~l~eL~~~~e~L~i~sea~~~sFL  753 (1070)
T KOG0218|consen  674 EIRKYLKRPNLEFRQVSGVDFLIEVKNSQIKKIPDDWIKVNSTKMVSRFHTPRIQKLLQELEYYKELLIIESEAQYKSFL  753 (1070)
T ss_pred             HHHHHhcCCCceeEEecCeeEEEEecccccccCCccceeeccceeeeecCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            9999999999999999999999999954  67999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeecCCCcceeeeecCccceeeecccccccccccccccCCce
Q 001405          714 KEFGGYYAEFQAAVQALAALDCLHALATLSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREY  793 (1083)
Q Consensus       714 ~~~~~~~~~l~~~~~~i~~lD~l~s~a~~a~~~~~~~P~~~~~~~~~~i~i~~~rhP~l~~~~~~~~v~ndi~l~~~~g~  793 (1083)
                      +.|..||..|+.+...+|.+||++|||..|.+.+||||+|+++.  ..|.|++||||+++...++.|||||+.++.+.++
T Consensus       754 ~kiSehYtelrkat~~LatlDCi~SlA~~s~n~nYvRPtfvd~~--~eI~ikngRhPvIe~Ll~d~fVPNdi~ls~eger  831 (1070)
T KOG0218|consen  754 NKISEHYTELRKATLNLATLDCILSLAATSCNVNYVRPTFVDGQ--QEIIIKNGRHPVIESLLVDYFVPNDIMLSPEGER  831 (1070)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCcccccch--hhhhhhcCCCchHHHHhhhccCCCcceecCCCce
Confidence            99999999999999999999999999999999999999999864  3799999999999988888999999999999999


Q ss_pred             EEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhCCCCc
Q 001405          794 CQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQS  873 (1083)
Q Consensus       794 i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~~~s  873 (1083)
                      |.+||||||||||.|+||+|++.+|||+|+||||+.+.++++|.+|+|||+.|++..|.|||+.||..+..|++.++..+
T Consensus       832 c~IITGPNMGGKSsyIrQvALitIMAQiGsfVPAeea~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil~kat~~S  911 (1070)
T KOG0218|consen  832 CNIITGPNMGGKSSYIRQVALITIMAQIGSFVPAEEARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEILKKATKRS  911 (1070)
T ss_pred             EEEEeCCCCCCchHHHHHHHHHHHHHHhcCccchHHhhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHHHhcccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhhccCCcceeEEEEEeecccCCCCCCCCCCce
Q 001405          874 LVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDV  953 (1083)
Q Consensus       874 LvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  953 (1083)
                      ||||||.||||+++||.+|++++++|+.+..+|.+||+|||+.++++...||+.|++|||+|+.. ..+..+|   .+.+
T Consensus       912 lvilDElGRGTsThDGiAIsYAtL~yf~~~~k~l~LFvTHfP~l~eie~~f~gqv~nyHmgyl~s-edk~~~d---~dsV  987 (1070)
T KOG0218|consen  912 LVILDELGRGTSTHDGIAISYATLKYFSELSKCLILFVTHFPMLGEIESGFPGQVRNYHMGYLES-EDKTGED---WDSV  987 (1070)
T ss_pred             hhhhHhhcCCCccccchhHHHHHHHHHHHhhceeEEeeecCcchhhhhcCCCccccceeeeeeee-ccccCCC---chhh
Confidence            99999999999999999999999999998789999999999999999999999999999999983 3333344   6889


Q ss_pred             eeeEeecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHhhhhh
Q 001405          954 TYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQ 1002 (1083)
Q Consensus       954 ~f~ykl~~G~~~~Sygi~vA~lag~p~~vi~~A~~~~~~l~~~~~~~~~ 1002 (1083)
                      +|+|||++|.|.+|||++||++|++|.+||+||-.++++++++.....+
T Consensus       988 tfLYklvrGlasrSyGlnVAklA~ip~sii~rA~siSeeleke~rn~rk 1036 (1070)
T KOG0218|consen  988 TFLYKLVRGLASRSYGLNVAKLARIPKSIINRAFSISEELEKESRNERK 1036 (1070)
T ss_pred             hhHHHHhhhhhhccccccHHHHhCCCHHHHHHHHHHHHHHHHHHhhHHH
Confidence            9999999999999999999999999999999999999999998876554

>TIGR01070 mutS1 DNA mismatch repair protein MutS Back     alignment and domain information
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05399 DNA mismatch repair protein MutS; Provisional Back     alignment and domain information
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair] Back     alignment and domain information
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair] Back     alignment and domain information
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair] Back     alignment and domain information
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair] Back     alignment and domain information
>TIGR01069 mutS2 MutS2 family protein Back     alignment and domain information
>PF00488 MutS_V: MutS domain V C-terminus Back     alignment and domain information
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes Back     alignment and domain information
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes Back     alignment and domain information
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes Back     alignment and domain information
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] Back     alignment and domain information
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes Back     alignment and domain information
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family Back     alignment and domain information
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes Back     alignment and domain information
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes Back     alignment and domain information
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family Back     alignment and domain information
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes Back     alignment and domain information
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes Back     alignment and domain information
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch Back     alignment and domain information
>PF01624 MutS_I: MutS domain I C-terminus Back     alignment and domain information
>PF05192 MutS_III: MutS domain III C-terminus Back     alignment and domain information
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport Back     alignment and domain information
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>PRK13537 nodulation ABC transporter NodI; Provisional Back     alignment and domain information
>PRK13536 nodulation factor exporter subunit NodI; Provisional Back     alignment and domain information
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] Back     alignment and domain information
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea Back     alignment and domain information
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) Back     alignment and domain information
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit Back     alignment and domain information
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] Back     alignment and domain information
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup Back     alignment and domain information
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin Back     alignment and domain information
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively Back     alignment and domain information
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota Back     alignment and domain information
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein Back     alignment and domain information
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota Back     alignment and domain information
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group Back     alignment and domain information
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance Back     alignment and domain information
>TIGR02673 FtsE cell division ATP-binding protein FtsE Back     alignment and domain information
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI Back     alignment and domain information
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit Back     alignment and domain information
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK Back     alignment and domain information
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional Back     alignment and domain information
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids Back     alignment and domain information
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein Back     alignment and domain information
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively Back     alignment and domain information
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters Back     alignment and domain information
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity Back     alignment and domain information
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system Back     alignment and domain information
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA Back     alignment and domain information
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] Back     alignment and domain information
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake Back     alignment and domain information
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system Back     alignment and domain information
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein Back     alignment and domain information
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake Back     alignment and domain information
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional Back     alignment and domain information
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine Back     alignment and domain information
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed Back     alignment and domain information
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane Back     alignment and domain information
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional Back     alignment and domain information
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE Back     alignment and domain information
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import Back     alignment and domain information
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein Back     alignment and domain information
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea Back     alignment and domain information
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids Back     alignment and domain information
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain Back     alignment and domain information
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport Back     alignment and domain information
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional Back     alignment and domain information
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity Back     alignment and domain information
>PRK10908 cell division protein FtsE; Provisional Back     alignment and domain information
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed Back     alignment and domain information
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter Back     alignment and domain information
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed Back     alignment and domain information
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit Back     alignment and domain information
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit Back     alignment and domain information
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds Back     alignment and domain information
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component Back     alignment and domain information
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient Back     alignment and domain information
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT Back     alignment and domain information
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA Back     alignment and domain information
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component Back     alignment and domain information
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional Back     alignment and domain information
>TIGR01978 sufC FeS assembly ATPase SufC Back     alignment and domain information
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional Back     alignment and domain information
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed Back     alignment and domain information
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export Back     alignment and domain information
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment Back     alignment and domain information
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP Back     alignment and domain information
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment Back     alignment and domain information
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids Back     alignment and domain information
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters Back     alignment and domain information
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional Back     alignment and domain information
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) Back     alignment and domain information
>PRK13633 cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export Back     alignment and domain information
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB Back     alignment and domain information
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) Back     alignment and domain information
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters Back     alignment and domain information
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family Back     alignment and domain information
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD Back     alignment and domain information
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome Back     alignment and domain information
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional Back     alignment and domain information
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional Back     alignment and domain information
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis Back     alignment and domain information
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein Back     alignment and domain information
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK13651 cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C Back     alignment and domain information
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D Back     alignment and domain information
>PRK14242 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein Back     alignment and domain information
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein Back     alignment and domain information
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK Back     alignment and domain information
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional Back     alignment and domain information
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional Back     alignment and domain information
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL Back     alignment and domain information
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional Back     alignment and domain information
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional Back     alignment and domain information
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE Back     alignment and domain information
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D Back     alignment and domain information
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD Back     alignment and domain information
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional Back     alignment and domain information
>PRK03695 vitamin B12-transporter ATPase; Provisional Back     alignment and domain information
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins Back     alignment and domain information
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules Back     alignment and domain information
>PRK13549 xylose transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10762 D-ribose transporter ATP binding protein; Provisional Back     alignment and domain information
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E Back     alignment and domain information
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed Back     alignment and domain information
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C Back     alignment and domain information
>PRK14235 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein Back     alignment and domain information
>PRK14237 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK09700 D-allose transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK14241 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 Back     alignment and domain information
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor Back     alignment and domain information
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional Back     alignment and domain information
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors Back     alignment and domain information
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 Back     alignment and domain information
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 Back     alignment and domain information
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth Back     alignment and domain information
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>CHL00131 ycf16 sulfate ABC transporter protein; Validated Back     alignment and domain information
>PRK14239 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03299 ABC_ModC_like Archeal protein closely related to ModC Back     alignment and domain information
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14240 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional Back     alignment and domain information
>cd03290 ABCC_SUR1_N The SUR domain 1 Back     alignment and domain information
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria Back     alignment and domain information
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor Back     alignment and domain information
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional Back     alignment and domain information
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional Back     alignment and domain information
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein Back     alignment and domain information
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional Back     alignment and domain information
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] Back     alignment and domain information
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters Back     alignment and domain information
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional Back     alignment and domain information
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14238 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14243 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) Back     alignment and domain information
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 Back     alignment and domain information
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR01257 rim_protein retinal-specific rim ABC transporter Back     alignment and domain information
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13549 xylose transporter ATP-binding subunit; Provisional Back     alignment and domain information
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK14236 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK15064 ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK13409 putative ATPase RIL; Provisional Back     alignment and domain information
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional Back     alignment and domain information
>PRK09700 D-allose transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional Back     alignment and domain information
>PRK10762 D-ribose transporter ATP binding protein; Provisional Back     alignment and domain information
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional Back     alignment and domain information
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein Back     alignment and domain information
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit Back     alignment and domain information
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 Back     alignment and domain information
>PRK10636 putative ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03288 ABCC_SUR2 The SUR domain 2 Back     alignment and domain information
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK10261 glutathione transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR01257 rim_protein retinal-specific rim ABC transporter Back     alignment and domain information
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10636 putative ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed Back     alignment and domain information
>PRK10261 glutathione transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK13409 putative ATPase RIL; Provisional Back     alignment and domain information
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>PRK15064 ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PLN03211 ABC transporter G-25; Provisional Back     alignment and domain information
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family Back     alignment and domain information
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed Back     alignment and domain information
>PRK11147 ABC transporter ATPase component; Reviewed Back     alignment and domain information
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function Back     alignment and domain information
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] Back     alignment and domain information
>PRK11147 ABC transporter ATPase component; Reviewed Back     alignment and domain information
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] Back     alignment and domain information
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] Back     alignment and domain information
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family Back     alignment and domain information
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] Back     alignment and domain information
>PLN03073 ABC transporter F family; Provisional Back     alignment and domain information
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family Back     alignment and domain information
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional Back     alignment and domain information
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] Back     alignment and domain information
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei Back     alignment and domain information
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional Back     alignment and domain information
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional Back     alignment and domain information
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional Back     alignment and domain information
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] Back     alignment and domain information
>PLN03073 ABC transporter F family; Provisional Back     alignment and domain information
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit Back     alignment and domain information
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA Back     alignment and domain information
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional Back     alignment and domain information
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family Back     alignment and domain information
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein Back     alignment and domain information
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional Back     alignment and domain information
>TIGR01192 chvA glucan exporter ATP-binding protein Back     alignment and domain information
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter Back     alignment and domain information
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed Back     alignment and domain information
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains Back     alignment and domain information
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed Back     alignment and domain information
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein Back     alignment and domain information
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] Back     alignment and domain information
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03140 ABC transporter G family member; Provisional Back     alignment and domain information
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein Back     alignment and domain information
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit Back     alignment and domain information
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein Back     alignment and domain information
>PF05188 MutS_II: MutS domain II; InterPro: IPR007860 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome Back     alignment and domain information
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family Back     alignment and domain information
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] Back     alignment and domain information
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein Back     alignment and domain information
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein Back     alignment and domain information
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter Back     alignment and domain information
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit Back     alignment and domain information
>PTZ00265 multidrug resistance protein (mdr1); Provisional Back     alignment and domain information
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends Back     alignment and domain information
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] Back     alignment and domain information
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains Back     alignment and domain information
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] Back     alignment and domain information
>PTZ00243 ABC transporter; Provisional Back     alignment and domain information
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] Back     alignment and domain information
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) Back     alignment and domain information
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein Back     alignment and domain information
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains Back     alignment and domain information
>PLN03140 ABC transporter G family member; Provisional Back     alignment and domain information
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] Back     alignment and domain information
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains Back     alignment and domain information
>PLN03232 ABC transporter C family member; Provisional Back     alignment and domain information
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains Back     alignment and domain information
>PTZ00265 multidrug resistance protein (mdr1); Provisional Back     alignment and domain information
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) Back     alignment and domain information
>PLN03130 ABC transporter C family member; Provisional Back     alignment and domain information
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems Back     alignment and domain information
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains Back     alignment and domain information
>PLN03232 ABC transporter C family member; Provisional Back     alignment and domain information
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) Back     alignment and domain information
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] Back     alignment and domain information
>PLN03130 ABC transporter C family member; Provisional Back     alignment and domain information
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms Back     alignment and domain information
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) Back     alignment and domain information
>PTZ00243 ABC transporter; Provisional Back     alignment and domain information
>PF05190 MutS_IV: MutS family domain IV C-terminus Back     alignment and domain information
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] Back     alignment and domain information
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR00630 uvra excinuclease ABC, A subunit Back     alignment and domain information
>PRK00635 excinuclease ABC subunit A; Provisional Back     alignment and domain information
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] Back     alignment and domain information
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains Back     alignment and domain information
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed Back     alignment and domain information
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] Back     alignment and domain information
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] Back     alignment and domain information
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] Back     alignment and domain information
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] Back     alignment and domain information
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] Back     alignment and domain information
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] Back     alignment and domain information
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>COG3910 Predicted ATPase [General function prediction only] Back     alignment and domain information
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] Back     alignment and domain information
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>PRK00635 excinuclease ABC subunit A; Provisional Back     alignment and domain information
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] Back     alignment and domain information
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR02858 spore_III_AA stage III sporulation protein AA Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A Back     alignment and domain information
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>PRK13695 putative NTPase; Provisional Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis Back     alignment and domain information
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 Back     alignment and domain information
>TIGR00630 uvra excinuclease ABC, A subunit Back     alignment and domain information
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] Back     alignment and domain information
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed Back     alignment and domain information
>cd01131 PilT Pilus retraction ATPase PilT Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PRK07721 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF13555 AAA_29: P-loop containing region of AAA domain Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK06793 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3 Back     alignment and domain information
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] Back     alignment and domain information
>PRK10869 recombination and repair protein; Provisional Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>TIGR01420 pilT_fam pilus retraction protein PilT Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>cd01125 repA Hexameric Replicative Helicase RepA Back     alignment and domain information
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases Back     alignment and domain information
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR00416 sms DNA repair protein RadA Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase Back     alignment and domain information
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>TIGR00618 sbcc exonuclease SbcC Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1083
3thw_B918 Human Mutsbeta Complexed With An Idl Of 4 Bases (Lo 1e-166
2o8b_B1022 Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T M 2e-66
1oh5_A800 The Crystal Structure Of E. Coli Muts Binding To Dn 2e-56
1wbd_A800 Crystal Structure Of E. Coli Dna Mismatch Repair En 2e-56
1wbb_A800 Crystal Structure Of E. Coli Dna Mismatch Repair En 3e-56
1wb9_A800 Crystal Structure Of E. Coli Dna Mismatch Repair En 3e-56
3k0s_A799 Crystal Structure Of E.Coli Dna Mismatch Repair Pro 1e-55
1ng9_A800 E.Coli Muts R697a: An Atpase-Asymmetry Mutant Lengt 2e-55
1e3m_A800 The Crystal Structure Of E. Coli Muts Binding To Dn 9e-52
1nne_A765 Crystal Structure Of The Muts-adpbef3-dna Complex L 1e-44
2o8b_A934 Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T M 3e-42
2o8e_A934 Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, 3e-42
1ewr_A649 Crystal Structure Of Taq Muts Length = 649 4e-41
1ewq_A765 Crystal Structure Taq Muts Complexed With A Heterod 6e-41
1fw6_A768 Crystal Structure Of A Taq Muts-Dna-Adp Ternary Com 6e-41
>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4) And Adp Length = 918 Back     alignment and structure 
Iteration: 1

 Score =  582 bits (1500), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 343/945 (36%), Positives = 517/945 (54%), Gaps = 85/945 (8%)
Query: 79   PSSQTTHNKK-YTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLD 137
            P S    +K  YTPLE Q +E+K ++ D +L +E GYK+RFFGEDAE+AA+ L IY HLD
Sbjct: 2    PKSANKRSKSIYTPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLD 61
Query: 138  HNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKA 197
            HNFMTASIPT RL VHVRRLV  G+KVGVVKQTETAA+KA G  ++  F R L+ALYTK+
Sbjct: 62   HNFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKS 121
Query: 198  TL---------XXXXXXXXXXXXXXXXSNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVV 248
            TL                         ++YL+C+ ++  NV   + G      ++ +G+V
Sbjct: 122  TLIGEDVNPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKG------NIFIGIV 175
Query: 249  AVEISTGDVVYGEFNDGFLRSGXXXXXXXXXXXXXXXGQPLSKQTEKML---LAYAGPAS 305
             V+ +TG+VV+  F D   RS                   LS+QTE ++    + +    
Sbjct: 176  GVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPSALSEQTEALIHRATSVSVQDD 235
Query: 306  NVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMP 365
             +RVE      F    A   V   Y    +DT+     Q             I GI+N+ 
Sbjct: 236  RIRVERMDNIYFEYSHAFQAVTEFY---AKDTVDIKGSQ------------IISGIVNLE 280
Query: 366  DLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSME-MTLSANTLQQLEVLRNNSNGSE 424
               + +LA  I++LK+F LE+++    +F+ LS  ME MT++  TL+ LE+L+N ++   
Sbjct: 281  KPVICSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMTINGTTLRNLEILQNQTDMKT 340
Query: 425  YGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQH 484
             G+LL +++HT T +G R L++WVT PL     I+ARLDAVSE+  S  S          
Sbjct: 341  KGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESS---------- 390
Query: 485  DEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGK 544
                            +   +   L + PDI+RG+  I+H+  +  EF  +++ +     
Sbjct: 391  ----------------VFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFLIVKTLY---- 430
Query: 545  QLQQLHIDGEYREKVTSKTLH--SALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDL 602
                 H+  E++  + +   H  S LL+ +IL    P ++      L  +N++AA  GD 
Sbjct: 431  -----HLKSEFQAIIPAVNSHIQSDLLRTVILEI--PELLSPVEHYLKILNEQAAKVGDK 483
Query: 603  LNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELP- 661
              L       F  + + +  +Q   +E+   +   RK L   + ++++VSG   +IE+  
Sbjct: 484  TELFK-DLSDFPLIKKRKDEIQGVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMIEIKN 542
Query: 662  -ANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYY 720
             A   +P +W KV STK   R+HSP ++     L    E+L + C A W  FL++F  +Y
Sbjct: 543  SAVSCIPTDWVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHY 602
Query: 721  AEFXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTIL--LD 778
                                  ++  ++ RP      E  +I I +GRHPV+D +L   D
Sbjct: 603  HSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTV---QEERKIVIKNGRHPVIDVLLGEQD 659
Query: 779  NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGI 838
             +VPN+T+L  + E   IITGPNMGGKS YI+QVALI IMAQ+GS+VPA  A + ++DGI
Sbjct: 660  QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGI 719
Query: 839  YTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLD 898
            +TRMGA+D+I +GRSTF+EEL + + I+R  T+QSLVI+DELGRGTSTHDG+AIAYATL+
Sbjct: 720  FTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLE 779
Query: 899  YLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTS--HKVMGPMDSKSDQD-VTY 955
            Y +   K + LFVTHYP + +++  ++  VG YH+ +L S     + P  ++   D VT+
Sbjct: 780  YFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTF 839
Query: 956  LYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSR 1000
            LY++  G++  S+G  VA+LA +P   + +A   + +LE  ++++
Sbjct: 840  LYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLINTK 884
>pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR Length = 1022 Back     alignment and structure
>pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A C:a Mismatch Length = 800 Back     alignment and structure
>pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38q Mutant, In Complex With A G.T Mismatch Length = 800 Back     alignment and structure
>pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38a Mutant, In Complex With A G.T Mismatch Length = 800 Back     alignment and structure
>pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38t Mutant, In Complex With A G.T Mismatch Length = 800 Back     alignment and structure
>pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein Muts, D693n Mutant, In Complex With Gt Mismatched Dna Length = 799 Back     alignment and structure
>pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant Length = 800 Back     alignment and structure
>pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A G:t Mismatch Length = 800 Back     alignment and structure
>pdb|1NNE|A Chain A, Crystal Structure Of The Muts-adpbef3-dna Complex Length = 765 Back     alignment and structure
>pdb|2O8B|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR Length = 934 Back     alignment and structure
>pdb|2O8E|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH ADP BOUND TO Msh2 Only Length = 934 Back     alignment and structure
>pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts Length = 649 Back     alignment and structure
>pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex Dna At 2.2 A Resolution Length = 765 Back     alignment and structure
>pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex Length = 768 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1083
3thx_B918 DNA mismatch repair protein MSH3; ABC family ATPas 0.0
2o8b_B1022 DNA mismatch repair protein MSH6; DNA damage respo 0.0
3thx_A934 DNA mismatch repair protein MSH2; ABC family ATPas 1e-158
1wb9_A800 DNA mismatch repair protein MUTS; DNA-binding, ATP 1e-145
1ewq_A765 DNA mismatch repair protein MUTS; multiple domains 1e-136
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 1e-04
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* Length = 918 Back     alignment and structure
 Score =  814 bits (2105), Expect = 0.0
 Identities = 355/965 (36%), Positives = 537/965 (55%), Gaps = 82/965 (8%)

Query: 79   PSSQTTHNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDH 138
             S+       YTPLE Q +E+K ++ D +L +E GYK+RFFGEDAE+AA+ L IY HLDH
Sbjct: 3    KSANKRSKSIYTPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDH 62

Query: 139  NFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKAT 198
            NFMTASIPT RL VHVRRLV  G+KVGVVKQTETAA+KA G  ++  F R L+ALYTK+T
Sbjct: 63   NFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKST 122

Query: 199  L--EAAEDVGGGEDGCGG-------ESNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVA 249
            L  E    +   +D            ++YL+C+ ++  NV   + G      ++ +G+V 
Sbjct: 123  LIGEDVNPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKG------NIFIGIVG 176

Query: 250  VEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTEKMLLAYAGPA---SN 306
            V+ +TG+VV+  F D   RS LE  + SL P ELLL   LS+QTE ++      +     
Sbjct: 177  VQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPSALSEQTEALIHRATSVSVQDDR 236

Query: 307  VRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPD 366
            +RVE      F    A   V   Y    +DT+     Q +             GI+N+  
Sbjct: 237  IRVERMDNIYFEYSHAFQAVTEFY---AKDTVDIKGSQIIS------------GIVNLEK 281

Query: 367  LAVQALALTIRHLKQFGLERIMCLGASFRSLSGSME-MTLSANTLQQLEVLRNNSNGSEY 425
              + +LA  I++LK+F LE+++    +F+ LS  ME MT++  TL+ LE+L+N ++    
Sbjct: 282  PVICSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMTINGTTLRNLEILQNQTDMKTK 341

Query: 426  GTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHD 485
            G+LL +++HT T +G R L++WVT PL     I+ARLDAVSE+  S  S           
Sbjct: 342  GSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQ------- 394

Query: 486  EKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQ 545
                            + + L  L   PDI+RG+  I+H+  +  EF  +++        
Sbjct: 395  ----------------IENHLRKL---PDIERGLCSIYHKKCSTQEFFLIVKT------- 428

Query: 546  LQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNL 605
            L  L  + +      +  + S LL+ +I     P ++      L  +N++AA  GD    
Sbjct: 429  LYHLKSEFQAIIPAVNSHIQSDLLRTVI--LEIPELLSPVEHYLKILNEQAAKVGDKTE- 485

Query: 606  MIISNGQFSEVARARKAVQSAKE-ELDSLINMCRKQLGMRNLEFMSVSGITHLIELP-AN 663
             +  +     + + RK        E+   +   RK L   + ++++VSG   +IE+  + 
Sbjct: 486  -LFKDLSDFPLIKKRKDEIQGVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMIEIKNSA 544

Query: 664  F-KVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAE 722
               +P +W KV STK   R+HSP ++     L    E+L + C A W  FL++F  +Y  
Sbjct: 545  VSCIPTDWVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHYHS 604

Query: 723  FQAAVQALAALDCLHALATLSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILL--DNF 780
               AV  LA +DC+ +LA +++  ++ RP   ++ +   I I +GRHPV+D +L   D +
Sbjct: 605  LCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEERK---IVIKNGRHPVIDVLLGEQDQY 661

Query: 781  VPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYT 840
            VPN+T+L  + E   IITGPNMGGKS YI+QVALI IMAQ+GS+VPA  A + ++DGI+T
Sbjct: 662  VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFT 721

Query: 841  RMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYL 900
            RMGA+D+I +GRSTF+EEL + + I+R  T+QSLVI+DELGRGTSTHDG+AIAYATL+Y 
Sbjct: 722  RMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYF 781

Query: 901  LEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDS---KSDQDVTYLY 957
            +   K + LFVTHYP + +++  ++  VG YH+ +L S            +    VT+LY
Sbjct: 782  IRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLY 841

Query: 958  KVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQ 1017
            ++  G++  S+G  VA+LA +P   + +A   + +LE  ++++ +       L    + Q
Sbjct: 842  QITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLINTKRKRLKYFAKLWTMHNAQ 901

Query: 1018 EQEAQ 1022
            + +  
Sbjct: 902  DLQKW 906
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* Length = 1022 Back     alignment and structure
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* Length = 934 Back     alignment and structure
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* Length = 800 Back     alignment and structure
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* Length = 765 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1083
d1wb9a2234 c.37.1.12 (A:567-800) DNA repair protein MutS, the 1e-54
d1ewqa2224 c.37.1.12 (A:542-765) DNA repair protein MutS, the 4e-47
d1wb9a1297 a.113.1.1 (A:270-566) DNA repair protein MutS, dom 3e-34
d1ewqa1275 a.113.1.1 (A:267-541) DNA repair protein MutS, dom 2e-33
d1wb9a4115 d.75.2.1 (A:2-116) DNA repair protein MutS, domain 3e-25
d1ewqa4120 d.75.2.1 (A:1-120) DNA repair protein MutS, domain 1e-23
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Length = 234 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  188 bits (477), Expect = 1e-54
 Identities = 100/248 (40%), Positives = 144/248 (58%), Gaps = 16/248 (6%)

Query: 748 FVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSC 807
           +  P F+D      I I  GRHPV++ +L + F+ N  NL  +R    IITGPNMGGKS 
Sbjct: 1   YTCPTFIDKPG---IRITEGRHPVVEQVLNEPFIANPLNLSPQRRML-IITGPNMGGKST 56

Query: 808 YIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILR 867
           Y+RQ ALI +MA +GS+VPA   E+  +D I+TR+GA+D +  GRSTF+ E+ E + IL 
Sbjct: 57  YMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILH 116

Query: 868 NCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGS 927
           N T  SLV++DE+GRGTST+DG+++A+A  + L    K + LF THY ++  +  K  G 
Sbjct: 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEG- 175

Query: 928 VGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRAT 987
           V   H+  L                + +++ V  G +  S+G  VA LA +P   I RA 
Sbjct: 176 VANVHLDALEHG-----------DTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRAR 224

Query: 988 VIAAKLEA 995
               +LE+
Sbjct: 225 QKLRELES 232
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} Length = 224 Back     information, alignment and structure
>d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III {Escherichia coli [TaxId: 562]} Length = 297 Back     information, alignment and structure
>d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III {Thermus aquaticus [TaxId: 271]} Length = 275 Back     information, alignment and structure
>d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I {Escherichia coli [TaxId: 562]} Length = 115 Back     information, alignment and structure
>d1ewqa4 d.75.2.1 (A:1-120) DNA repair protein MutS, domain I {Thermus aquaticus [TaxId: 271]} Length = 120 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1083
d1wb9a2234 DNA repair protein MutS, the C-terminal domain {Es 100.0
d1ewqa2224 DNA repair protein MutS, the C-terminal domain {Th 100.0
d1wb9a1297 DNA repair protein MutS, domain III {Escherichia c 100.0
d1ewqa1275 DNA repair protein MutS, domain III {Thermus aquat 100.0
d1wb9a4115 DNA repair protein MutS, domain I {Escherichia col 100.0
d1ewqa4120 DNA repair protein MutS, domain I {Thermus aquatic 100.0
d1vpla_238 Putative ABC transporter TM0544 {Thermotoga mariti 99.81
d1ji0a_240 Branched chain aminoacid ABC transporter {Thermoto 99.81
d1v43a3239 Hypothetical protein PH0022, N-terminal domain {Py 99.79
d2awna2232 Maltose transport protein MalK, N-terminal domain 99.79
d1g2912240 Maltose transport protein MalK, N-terminal domain 99.79
d3d31a2229 Sulfate/molybdate ABC transporter, ATP-binding pro 99.78
d1l2ta_230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 99.78
d1g6ha_254 MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 99.78
d1b0ua_258 ATP-binding subunit of the histidine permease {Sal 99.77
d3dhwc1240 Methionine import ATP-binding protein MetN {Escher 99.76
d1oxxk2242 Glucose transport protein GlcV, N-terminal domain 99.75
d1wb9a3153 DNA repair protein MutS, domain II {Escherichia co 99.74
d1l7vc_231 ABC transporter involved in vitamin B12 uptake, Bt 99.71
d2onka1240 Molybdate/tungstate import ATP-binding protein Wtp 99.7
d1ewqa3146 DNA repair protein MutS, domain II {Thermus aquati 99.69
d1jj7a_251 Peptide transporter Tap1, C-terminal ABC domain {H 99.68
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 99.66
d1mv5a_242 Multidrug resistance ABC transporter LmrA, C-termi 99.63
d1r0wa_281 Cystic fibrosis transmembrane conductance regulato 99.63
d3b60a1253 Multidrug resistance ABC transporter MsbA, C-termi 99.62
d2hyda1255 Putative multidrug export ATP-binding/permease pro 99.62
d1sgwa_200 Putative ABC transporter PF0895 {Pyrococcus furios 99.61
g1f2t.1292 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 99.0
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 98.8
g1ii8.1369 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 98.5
d1e69a_308 Smc head domain {Thermotoga maritima [TaxId: 2336] 98.16
g1xew.1329 Smc head domain {Pyrococcus furiosus [TaxId: 2261] 98.12
d1xp8a1268 RecA protein, ATPase-domain {Deinococcus radiodura 97.16
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 97.09
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 97.0
d1mo6a1269 RecA protein, ATPase-domain {Mycobacterium tubercu 96.97
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 96.95
d1nlfa_274 Hexameric replicative helicase repA {Escherichia c 96.94
d1ls1a2207 GTPase domain of the signal sequence recognition p 96.78
d1w1wa_427 Smc head domain {Baker's yeast (Saccharomyces cere 96.68
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 96.66
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 96.66
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 96.54
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 96.53
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 96.51
d1vmaa2213 GTPase domain of the signal recognition particle r 96.49
d1okkd2207 GTPase domain of the signal recognition particle r 96.4
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 96.38
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 96.35
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 96.27
d1w1wa_427 Smc head domain {Baker's yeast (Saccharomyces cere 96.18
d2qy9a2211 GTPase domain of the signal recognition particle r 96.12
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 95.86
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 95.57
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 95.52
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 95.49
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 95.33
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 95.32
d1j8yf2211 GTPase domain of the signal sequence recognition p 95.23
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 95.11
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 94.98
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 94.96
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 94.72
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 94.59
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 94.52
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 94.43
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 94.39
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 94.38
d1s96a_205 Guanylate kinase {Escherichia coli [TaxId: 562]} 94.36
d1qhla_222 Cell division protein MukB {Escherichia coli [TaxI 94.3
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 94.22
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 94.15
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 94.04
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 94.02
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 93.87
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 93.77
d1yrba1244 ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss 93.55
d1nn5a_209 Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 93.54
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 93.5
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 93.49
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 93.46
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 93.32
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 92.96
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 92.87
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 92.86
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 92.79
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 92.77
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 92.74
d1uj2a_213 Uridine-cytidine kinase 2 {Human (Homo sapiens) [T 92.51
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 92.35
d1kgda_178 Guanylate kinase-like domain of Cask {Human (Homo 92.05
d1lvga_190 Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 92.01
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 91.98
d1jjva_205 Dephospho-CoA kinase {Haemophilus influenzae [TaxI 91.84
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 91.68
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 91.64
d2p67a1327 LAO/AO transport system kinase ArgK {Escherichia c 91.24
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 91.18
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 90.99
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 90.88
d1m7ga_208 Adenosine-5'phosphosulfate kinase (APS kinase) {Fu 90.41
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 90.17
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 90.12
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 90.01
d4tmka_210 Thymidylate kinase {Escherichia coli [TaxId: 562]} 89.94
d1tmka_214 Thymidylate kinase {Baker's yeast (Saccharomyces c 89.9
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 89.79
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 89.78
d1u0la2225 Probable GTPase EngC (YjeQ), C-terminal domain {Th 89.71
d2vp4a1197 Deoxyribonucleoside kinase {Fruit fly (Drosophila 89.37
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 89.29
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 89.12
d1uf9a_191 Dephospho-CoA kinase {Thermus thermophilus [TaxId: 88.99
d1r6bx3315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 88.57
d1vhta_208 Dephospho-CoA kinase {Escherichia coli [TaxId: 562 88.56
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 88.56
d1nija1222 Hypothetical protein YjiA, N-terminal domain {Esch 88.47
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 88.34
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 88.18
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 87.79
d1sq5a_308 Pantothenate kinase PanK {Escherichia coli [TaxId: 87.55
d1p5zb_241 Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 87.48
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 87.08
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 87.02
d2qm8a1323 Metallochaperone MeaB {Methylobacterium extorquens 86.83
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 86.57
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 86.53
d2i1qa2258 DNA repair protein Rad51, catalytic domain {Archae 86.13
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 85.97
d1gsia_208 Thymidylate kinase {Mycobacterium tuberculosis [Ta 85.48
d1odfa_286 Hypothetical protein Ygr205W {Baker's yeast (Sacch 85.35
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 84.92
d2ocpa1241 Deoxyguanosine kinase {Human (Homo sapiens) [TaxId 84.88
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 84.61
d1q3ta_223 CMP kinase {Streptococcus pneumoniae [TaxId: 1313] 83.94
d1htwa_158 Hypothetical protein HI0065 {Haemophilus influenza 83.88
d1svma_362 Papillomavirus large T antigen helicase domain {Si 83.78
d1xpua3289 Transcription termination factor Rho, ATPase domai 83.77
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 83.69
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 83.68
d1t9ha2231 Probable GTPase EngC (YjeQ), C-terminal domain {Ba 83.03
d1deka_241 Deoxynucleoside monophosphate kinase {Bacteriophag 82.43
d1azta2221 Transducin (alpha subunit) {Cow (Bos taurus) [TaxI 82.22
d1ckea_225 CMP kinase {Escherichia coli [TaxId: 562]} 82.16
d1f6ba_186 SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 82.09
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 81.74
d1zd9a1164 ADP-ribosylation factor {Human (Homo sapiens), ARL 81.55
d1r8sa_160 ADP-ribosylation factor {Human (Homo sapiens), ARF 81.34
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 81.11
d1zj6a1177 ADP-ribosylation factor {Human (Homo sapiens), ARL 80.94
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 80.5
d1ksha_165 ADP-ribosylation factor {Mouse (Mus musculus), ARL 80.34
d2qtvb1166 SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 80.17
d2fh5b1207 Signal recognition particle receptor beta-subunit 80.03
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=419.31  Aligned_cols=232  Identities=43%  Similarity=0.732  Sum_probs=218.3

Q ss_pred             CCCCEEECCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             86643406999632566037656044013661012566556688628999838999813699777999998540553346
Q 001405          748 FVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPA  827 (1083)
Q Consensus       748 ~~~P~~~~~~~~~~i~i~~~rhP~l~~~~~~~~v~ndi~l~~~~~~i~~itGpN~~GKSTlLr~i~~~~~laq~g~~vpa  827 (1083)
                      ||||+|++++   .+.++++|||+++....+.+||||+.++. ..++++||||||||||||||++|++++|||+|+||||
T Consensus         1 y~~P~~~~~~---~l~i~~~rHPlle~~~~~~~VpNdi~l~~-~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA   76 (234)
T d1wb9a2           1 YTCPTFIDKP---GIRITEGRHPVVEQVLNEPFIANPLNLSP-QRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPA   76 (234)
T ss_dssp             CBCCEECSSS---CEEEEEECCTTHHHHCSSCCCCEEEEECS-SSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSS
T ss_pred             CCCCEECCCC---CEEEEEEECCEEECCCCCCCCCEEEEECC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEC
T ss_conf             9787781899---68999737877974469982640579889-9539999546731368999987999999872976741


Q ss_pred             CCCCCCHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             53102069999860895016972020258999999999995899929998299999997999999999999998279919
Q 001405          828 SSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCM  907 (1083)
Q Consensus       828 ~~~~~~~~d~i~~~~~~~d~~~~~~Stf~~em~~~~~il~~~~~~sLiilDE~~~Gtd~~~~~~i~~~il~~l~~~~~~~  907 (1083)
                      +.+.++++|+||++++..|++..+.|+|+.||.+++.++..+++++|||+||+|+||++.||.++++++++++....++.
T Consensus        77 ~~a~~~~~d~I~~~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~  156 (234)
T d1wb9a2          77 QKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKAL  156 (234)
T ss_dssp             SEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCE
T ss_pred             CCEECCCCHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             76661344202348746753436531899999999999974546608853222358774566678987645432045442


Q ss_pred             EEEEECCHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf             99980765799975230697211389998522557998999999445657654899988389999999899989999999
Q 001405          908 VLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRAT  987 (1083)
Q Consensus       908 vl~~TH~~~l~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~Sygi~vA~~aGip~~vi~~A~  987 (1083)
                      ++++||++++..+...+++ +.++||++...           ++.++|+||+.+|++++|||+++|+++|+|++||++|+
T Consensus       157 ~i~tTH~~~l~~~~~~~~~-v~~~~~~~~~~-----------~~~i~f~YkL~~G~~~~s~ai~iA~~~Glp~~ii~~A~  224 (234)
T d1wb9a2         157 TLFATHYFELTQLPEKMEG-VANVHLDALEH-----------GDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRAR  224 (234)
T ss_dssp             EEEECSCGGGGGHHHHSTT-EEEEEEEEEEE-----------TTEEEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHCCCC-EEEEEEEEEEC-----------CCCCEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHH
T ss_conf             8985246877643312455-47899887603-----------68401787746799997299999999196999999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q 001405          988 VIAAKLEA  995 (1083)
Q Consensus       988 ~i~~~l~~  995 (1083)
                      +++++++.
T Consensus       225 ~i~~~lE~  232 (234)
T d1wb9a2         225 QKLRELES  232 (234)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHC
T ss_conf             99998763
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ewqa4 d.75.2.1 (A:1-120) DNA repair protein MutS, domain I {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Back     information, alignment and structure
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1wb9a3 c.55.6.1 (A:117-269) DNA repair protein MutS, domain II {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ewqa3 c.55.6.1 (A:121-266) DNA repair protein MutS, domain II {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Back     information, alignment and structure
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Back     information, alignment and structure
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Back     information, alignment and structure
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure