Citrus Sinensis ID: 001421
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1079 | 2.2.26 [Sep-21-2011] | |||||||
| Q941L0 | 1065 | Cellulose synthase A cata | yes | no | 0.987 | 1.0 | 0.858 | 0.0 | |
| Q84ZN6 | 1081 | Probable cellulose syntha | yes | no | 0.982 | 0.980 | 0.820 | 0.0 | |
| Q84M43 | 1073 | Probable cellulose syntha | no | no | 0.978 | 0.984 | 0.811 | 0.0 | |
| A2XN66 | 1073 | Probable cellulose syntha | N/A | no | 0.978 | 0.984 | 0.811 | 0.0 | |
| Q6AT26 | 1076 | Probable cellulose syntha | no | no | 0.965 | 0.968 | 0.708 | 0.0 | |
| A2Y0X2 | 1076 | Probable cellulose syntha | N/A | no | 0.965 | 0.968 | 0.708 | 0.0 | |
| O48946 | 1081 | Cellulose synthase A cata | no | no | 0.966 | 0.964 | 0.697 | 0.0 | |
| Q9SKJ5 | 1065 | Probable cellulose syntha | no | no | 0.961 | 0.973 | 0.678 | 0.0 | |
| Q69P51 | 1055 | Cellulose synthase A cata | no | no | 0.943 | 0.964 | 0.682 | 0.0 | |
| A2Z1C8 | 1055 | Cellulose synthase A cata | N/A | no | 0.943 | 0.964 | 0.682 | 0.0 |
| >sp|Q941L0|CESA3_ARATH Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2 | Back alignment and function desciption |
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Score = 1914 bits (4957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 926/1079 (85%), Positives = 996/1079 (92%), Gaps = 14/1079 (1%)
Query: 1 MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQ 60
MESEGET K +KN+ Q CQIC DNVGKTVDG+ FVACD+C+FPVCRPCYEYERKDGNQ
Sbjct: 1 MESEGETAGKPMKNIVPQTCQICSDNVGKTVDGDRFVACDICSFPVCRPCYEYERKDGNQ 60
Query: 61 SCPQCKTRYKKHKGSPAILGDREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYG 120
SCPQCKTRYK+ KGSPAI GD++EDG AD+G +FNY QK+KISERML WH+ G
Sbjct: 61 SCPQCKTRYKRLKGSPAIPGDKDEDGLADEGTVEFNYP-----QKEKISERMLGWHLTRG 115
Query: 121 QGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDIN 180
+GE+ P+YD EVSHNH+PRLT Q+ SGE SAASPE LS++S G GKR+ YS D+N
Sbjct: 116 KGEEMGEPQYDKEVSHNHLPRLTSRQDTSGEFSAASPERLSVSSTIAG-GKRLPYSSDVN 174
Query: 181 QSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDAST 240
QSP+ R+VDPV GLGNVAWKERVDGWKMKQEKN P+ST QA SERGG DIDAST
Sbjct: 175 QSPNRRIVDPV------GLGNVAWKERVDGWKMKQEKNTGPVST-QAASERGGVDIDAST 227
Query: 241 DVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIAL 300
D+L D++LLNDEARQPLSRKV IPSSRINPYRMVI LRL+IL +FL+YRI NPV NA AL
Sbjct: 228 DILADEALLNDEARQPLSRKVSIPSSRINPYRMVIMLRLVILCLFLHYRITNPVPNAFAL 287
Query: 301 WLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDP 360
WL+SVICEIWFA+SWI DQFPKW PVNRETYLDRL+LRY+REGEPSQLAAVDIFVSTVDP
Sbjct: 288 WLVSVICEIWFALSWILDQFPKWFPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDP 347
Query: 361 LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYN 420
LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML+FE+L+ETSEFARKWVPFCKKY+
Sbjct: 348 LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLAETSEFARKWVPFCKKYS 407
Query: 421 IEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVM 480
IEPRAPEWYFA KIDYLKDKVQ SFVKDRRAMKREYEEFKIRIN LV+KA K PEEGWVM
Sbjct: 408 IEPRAPEWYFAAKIDYLKDKVQTSFVKDRRAMKREYEEFKIRINALVSKALKCPEEGWVM 467
Query: 481 QDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA 540
QDGTPWPGNNTRDHPGMIQVFLG+NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA
Sbjct: 468 QDGTPWPGNNTRDHPGMIQVFLGQNGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA 527
Query: 541 LVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRN 600
LVRVSAVLTNGPF+LNLDCDHYINNSKALREAMCF+MDPNLGK VCYVQFPQRFDGID+N
Sbjct: 528 LVRVSAVLTNGPFILNLDCDHYINNSKALREAMCFLMDPNLGKQVCYVQFPQRFDGIDKN 587
Query: 601 DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFG 660
DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPP+K KH+KP LLS L G
Sbjct: 588 DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKVKHKKPSLLSKLCG 647
Query: 661 GSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKR 720
GSRKKNSK+ K+ SDKKKS +H D TVP+F+L+DIEEGVEGAGFDDEK+LLMSQMSLEKR
Sbjct: 648 GSRKKNSKAKKE-SDKKKSGRHTDSTVPVFNLDDIEEGVEGAGFDDEKALLMSQMSLEKR 706
Query: 721 FGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDI 780
FGQSAVFVASTLMENGGVP SAT E LLKEAIHVISCGYEDK++WG EIGWIYGSVTEDI
Sbjct: 707 FGQSAVFVASTLMENGGVPPSATPENLLKEAIHVISCGYEDKSDWGMEIGWIYGSVTEDI 766
Query: 781 LTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGY 840
LTGFKMHARGWRSIYCMPK PAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGY
Sbjct: 767 LTGFKMHARGWRSIYCMPKLPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGY 826
Query: 841 GGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLS 900
GRLKFLERFAYVNTTIYP+T+IPLLMYCTLPAVCL TN+FI+PQISN+ASI F+SLFLS
Sbjct: 827 NGRLKFLERFAYVNTTIYPITSIPLLMYCTLPAVCLFTNQFIIPQISNIASIWFLSLFLS 886
Query: 901 IFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKAS 960
IFATGILEMRWSGVGIDEWWRNEQFWVIGGVS+HLFAVFQG+LKVLAGIDTNFTVTSKAS
Sbjct: 887 IFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGILKVLAGIDTNFTVTSKAS 946
Query: 961 DEDGDFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWV 1020
DEDGDF ELY+FKWTTLLIPPTTLL++NLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWV
Sbjct: 947 DEDGDFAELYLFKWTTLLIPPTTLLIVNLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWV 1006
Query: 1021 IVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 1079
IVHLYPFLKGLMGRQNRTPTIVVVWS+LLASIFSLLWVR+DPFT+RVTGPD+ +CGINC
Sbjct: 1007 IVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTSRVTGPDILECGINC 1065
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Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. Involved in the primary cell wall formation, especially in roots. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 2 |
| >sp|Q84ZN6|CESA8_ORYSJ Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q84M43|CESA2_ORYSJ Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1 | Back alignment and function description |
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| >sp|A2XN66|CESA2_ORYSI Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6AT26|CESA1_ORYSJ Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1 | Back alignment and function description |
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| >sp|A2Y0X2|CESA1_ORYSI Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1 | Back alignment and function description |
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| >sp|O48946|CESA1_ARATH Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9SKJ5|CESAA_ARATH Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q69P51|CESA9_ORYSJ Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1 | Back alignment and function description |
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| >sp|A2Z1C8|CESA9_ORYSI Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1079 | ||||||
| 255582781 | 1085 | Cellulose synthase A catalytic subunit 6 | 1.0 | 0.994 | 0.917 | 0.0 | |
| 183211890 | 1084 | cellulose synthase [Betula platyphylla] | 1.0 | 0.995 | 0.916 | 0.0 | |
| 340343837 | 1080 | cellulose synthase A [Eucalyptus camaldu | 0.998 | 0.997 | 0.916 | 0.0 | |
| 162955780 | 1080 | cellulose synthase [Eucalyptus grandis] | 0.998 | 0.997 | 0.915 | 0.0 | |
| 429326428 | 1079 | cellulose synthase [Populus tomentosa] | 1.0 | 1.0 | 0.920 | 0.0 | |
| 162955786 | 1080 | cellulose synthase [Eucalyptus grandis] | 0.998 | 0.997 | 0.914 | 0.0 | |
| 347953823 | 1067 | cellulose synthase catalytic subunit [Go | 0.988 | 1.0 | 0.906 | 0.0 | |
| 307557871 | 1075 | cellulose synthase [Leucaena leucocephal | 0.993 | 0.997 | 0.905 | 0.0 | |
| 347953853 | 1067 | cellulose synthase catalytic subunit [Go | 0.988 | 1.0 | 0.906 | 0.0 | |
| 347953863 | 1067 | cellulose synthase catalytic subunit [Go | 0.988 | 1.0 | 0.906 | 0.0 |
| >gi|255582781|ref|XP_002532166.1| Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis] gi|223528153|gb|EEF30219.1| Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 2027 bits (5252), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 995/1085 (91%), Positives = 1034/1085 (95%), Gaps = 6/1085 (0%)
Query: 1 MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQ 60
MESEGETG K +K+VG QVCQIC DNVG T+DG+PFVAC+VCAFPVCRPCYEYERKDGNQ
Sbjct: 1 MESEGETGAKPVKSVGRQVCQICSDNVGTTLDGDPFVACNVCAFPVCRPCYEYERKDGNQ 60
Query: 61 SCPQCKTRYKKHKGSPAILGDREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYG 120
SCPQCKTRYK+ KGSPAILGDREED DADDGA DFNY +E QNQ+QKI+ERMLSW M YG
Sbjct: 61 SCPQCKTRYKRQKGSPAILGDREEDCDADDGAKDFNYPTETQNQRQKIAERMLSWQMNYG 120
Query: 121 QGED-ASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIH---YS 176
+GED APKYD EVSHNHIP LT G EVSGELSAASPEH+SMASPGVG KRIH Y+
Sbjct: 121 RGEDDVGAPKYDKEVSHNHIPLLTNGHEVSGELSAASPEHVSMASPGVGGAKRIHTLPYA 180
Query: 177 GDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQE--KNVVPMSTGQATSERGGG 234
DIN SP+ RVVDPVREFGSPGLGNVAWKERVDGWKMKQ+ KNV+PMS+GQA SERG G
Sbjct: 181 ADINASPNPRVVDPVREFGSPGLGNVAWKERVDGWKMKQDPVKNVIPMSSGQAPSERGVG 240
Query: 235 DIDASTDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPV 294
DIDASTDVLVDDSLLNDEARQPLSRKV IPSSRINPYRMVI LRLIIL IFL+YRI NPV
Sbjct: 241 DIDASTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLIILCIFLHYRITNPV 300
Query: 295 HNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIF 354
NA ALWLISVICEIWFAISWI DQFPKWLP+NRETYLDRLSLRY+REGEPSQLAAVDIF
Sbjct: 301 TNAYALWLISVICEIWFAISWILDQFPKWLPINRETYLDRLSLRYDREGEPSQLAAVDIF 360
Query: 355 VSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVP 414
VSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVP
Sbjct: 361 VSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVP 420
Query: 415 FCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIP 474
FCKKYNIEPRAPEWYF QKIDYLKDKVQ SFVK+RRAMKREYEEFK+ INGLVAKAQKIP
Sbjct: 421 FCKKYNIEPRAPEWYFTQKIDYLKDKVQTSFVKERRAMKREYEEFKVHINGLVAKAQKIP 480
Query: 475 EEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKK 534
EEGW+MQDGTPWPGNNTRDHPGMIQVFLG+NGGLDAEGNELPRLVYVSREKRPGFQHHKK
Sbjct: 481 EEGWIMQDGTPWPGNNTRDHPGMIQVFLGQNGGLDAEGNELPRLVYVSREKRPGFQHHKK 540
Query: 535 AGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRF 594
AGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCF+MDPNLGK VCYVQFPQRF
Sbjct: 541 AGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGKQVCYVQFPQRF 600
Query: 595 DGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGL 654
DGIDRNDRYANRNTVFFDINLRGLDG+QGPVYVGTGCVFNRTALYGYEPPLKPKH+KPGL
Sbjct: 601 DGIDRNDRYANRNTVFFDINLRGLDGVQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGL 660
Query: 655 LSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQ 714
LSSL GGSRKKNSKS+KKG DKKKS KHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQ
Sbjct: 661 LSSLCGGSRKKNSKSNKKGLDKKKSGKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQ 720
Query: 715 MSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYG 774
MSLEKRFGQSAVFVASTLMENGGVPQSAT ETLLKEAIHVISCGYEDKT+WGSEIGWIYG
Sbjct: 721 MSLEKRFGQSAVFVASTLMENGGVPQSATSETLLKEAIHVISCGYEDKTDWGSEIGWIYG 780
Query: 775 SVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHC 834
SVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHC
Sbjct: 781 SVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHC 840
Query: 835 PIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVF 894
PIWYGY GRLK+LERFAYVNTTIYP+TAIPLLMYCTLPAVCLLT+KFI+PQISNLASI F
Sbjct: 841 PIWYGYSGRLKWLERFAYVNTTIYPVTAIPLLMYCTLPAVCLLTDKFIIPQISNLASIWF 900
Query: 895 ISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFT 954
ISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVS+HLFAVFQGLLKVLAGIDTNFT
Sbjct: 901 ISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFT 960
Query: 955 VTSKASDEDGDFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKL 1014
VTSKASDEDGDF ELYMFKWTTLL+PPTTLL+IN +GVVAG+S+AINSGYQSWGPLFGKL
Sbjct: 961 VTSKASDEDGDFAELYMFKWTTLLVPPTTLLIINFIGVVAGISHAINSGYQSWGPLFGKL 1020
Query: 1015 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQ 1074
FFAFWVI+HLYPFLKGLMGRQNR PTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQ
Sbjct: 1021 FFAFWVIIHLYPFLKGLMGRQNRMPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQ 1080
Query: 1075 CGINC 1079
CGINC
Sbjct: 1081 CGINC 1085
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: N/A Phylum: Streptophyta Superkingdom: |
| >gi|183211890|gb|ACC59195.1| cellulose synthase [Betula platyphylla] | Back alignment and taxonomy information |
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| >gi|340343837|gb|AEK31218.1| cellulose synthase A [Eucalyptus camaldulensis] | Back alignment and taxonomy information |
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| >gi|162955780|gb|ABY25274.1| cellulose synthase [Eucalyptus grandis] | Back alignment and taxonomy information |
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| >gi|429326428|gb|AFZ78554.1| cellulose synthase [Populus tomentosa] | Back alignment and taxonomy information |
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| >gi|162955786|gb|ABY25277.1| cellulose synthase [Eucalyptus grandis] | Back alignment and taxonomy information |
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| >gi|347953823|gb|AEP33537.1| cellulose synthase catalytic subunit [Gossypium laxum] | Back alignment and taxonomy information |
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| >gi|307557871|gb|ACU87559.2| cellulose synthase [Leucaena leucocephala] | Back alignment and taxonomy information |
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| >gi|347953853|gb|AEP33552.1| cellulose synthase catalytic subunit [Gossypium armourianum] | Back alignment and taxonomy information |
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| >gi|347953863|gb|AEP33557.1| cellulose synthase catalytic subunit [Gossypium gossypioides] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1079 | ||||||
| TAIR|locus:2156789 | 1065 | CEV1 "CONSTITUTIVE EXPRESSION | 0.987 | 1.0 | 0.815 | 0.0 | |
| TAIR|locus:2127776 | 1081 | CESA1 "cellulose synthase 1" [ | 0.962 | 0.961 | 0.669 | 0.0 | |
| TAIR|locus:2136308 | 1084 | CESA2 "cellulose synthase A2" | 0.974 | 0.969 | 0.622 | 0.0 | |
| TAIR|locus:2176090 | 1084 | CESA6 "cellulose synthase 6" [ | 0.974 | 0.969 | 0.621 | 0.0 | |
| TAIR|locus:2052576 | 1088 | CESA9 "cellulose synthase A9" | 0.974 | 0.965 | 0.611 | 0.0 | |
| TAIR|locus:2040080 | 1065 | CESA10 "cellulose synthase 10" | 0.849 | 0.861 | 0.689 | 0.0 | |
| TAIR|locus:2124167 | 985 | IRX1 "IRREGULAR XYLEM 1" [Arab | 0.803 | 0.880 | 0.669 | 0.0 | |
| TAIR|locus:2178193 | 1069 | CESA5 "cellulose synthase 5" [ | 0.465 | 0.469 | 0.666 | 0.0 | |
| TAIR|locus:2172457 | 1049 | CESA4 "cellulose synthase A4" | 0.468 | 0.482 | 0.652 | 0.0 | |
| TAIR|locus:2178935 | 1026 | IRX3 "IRREGULAR XYLEM 3" [Arab | 0.376 | 0.395 | 0.789 | 0.0 |
| TAIR|locus:2156789 CEV1 "CONSTITUTIVE EXPRESSION OF VSP 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4687 (1655.0 bits), Expect = 0., P = 0.
Identities = 880/1079 (81%), Positives = 940/1079 (87%)
Query: 1 MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQ 60
MESEGET K +KN+ Q CQIC DNVGKTVDG+ FVACD+C+FPVCRPCYEYERKDGNQ
Sbjct: 1 MESEGETAGKPMKNIVPQTCQICSDNVGKTVDGDRFVACDICSFPVCRPCYEYERKDGNQ 60
Query: 61 SCPQCKTRYKKHKGSPAILXXXXXXXXXXXXXXXFNYSSENQNQKQKISERMLSWHMRYG 120
SCPQCKTRYK+ KGSPAI FNY QK+KISERML WH+ G
Sbjct: 61 SCPQCKTRYKRLKGSPAIPGDKDEDGLADEGTVEFNYP-----QKEKISERMLGWHLTRG 115
Query: 121 QGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDIN 180
+GE+ P+YD EVSHNH+PRLT Q+ SGE SAASPE LS++S G GKR+ YS D+N
Sbjct: 116 KGEEMGEPQYDKEVSHNHLPRLTSRQDTSGEFSAASPERLSVSSTIAG-GKRLPYSSDVN 174
Query: 181 QSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDAST 240
QSP+ R+VDPV GLGNVAWKERVDGWKMKQEKN P+ST QA SERGG DIDAST
Sbjct: 175 QSPNRRIVDPV------GLGNVAWKERVDGWKMKQEKNTGPVST-QAASERGGVDIDAST 227
Query: 241 DVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVXXXXXXXXXXXXXXXXKNPVHNAIAL 300
D+L D++LLNDEARQPLSRKV IPSSRINPYRMV NPV NA AL
Sbjct: 228 DILADEALLNDEARQPLSRKVSIPSSRINPYRMVIMLRLVILCLFLHYRITNPVPNAFAL 287
Query: 301 WLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDP 360
WL+SVICEIWFA+SWI DQFPKW PVNRETYLDRL+LRY+REGEPSQLAAVDIFVSTVDP
Sbjct: 288 WLVSVICEIWFALSWILDQFPKWFPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDP 347
Query: 361 LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYN 420
LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML+FE+L+ETSEFARKWVPFCKKY+
Sbjct: 348 LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLAETSEFARKWVPFCKKYS 407
Query: 421 IEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVM 480
IEPRAPEWYFA KIDYLKDKVQ SFVKDRRAMKREYEEFKIRIN LV+KA K PEEGWVM
Sbjct: 408 IEPRAPEWYFAAKIDYLKDKVQTSFVKDRRAMKREYEEFKIRINALVSKALKCPEEGWVM 467
Query: 481 QDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA 540
QDGTPWPGNNTRDHPGMIQVFLG+NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA
Sbjct: 468 QDGTPWPGNNTRDHPGMIQVFLGQNGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA 527
Query: 541 LVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRN 600
LVRVSAVLTNGPF+LNLDCDHYINNSKALREAMCF+MDPNLGK VCYVQFPQRFDGID+N
Sbjct: 528 LVRVSAVLTNGPFILNLDCDHYINNSKALREAMCFLMDPNLGKQVCYVQFPQRFDGIDKN 587
Query: 601 DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFX 660
DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPP+K KH+KP LLS L
Sbjct: 588 DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKVKHKKPSLLSKLCG 647
Query: 661 XXXXXXXXXXXXXXXXXXXXXHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKR 720
H D TVP+F+L+DIEEGVEGAGFDDEK+LLMSQMSLEKR
Sbjct: 648 GSRKKNSKAKKESDKKKSGR-HTDSTVPVFNLDDIEEGVEGAGFDDEKALLMSQMSLEKR 706
Query: 721 FGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDI 780
FGQSAVFVASTLMENGGVP SAT E LLKEAIHVISCGYEDK++WG EIGWIYGSVTEDI
Sbjct: 707 FGQSAVFVASTLMENGGVPPSATPENLLKEAIHVISCGYEDKSDWGMEIGWIYGSVTEDI 766
Query: 781 LTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGY 840
LTGFKMHARGWRSIYCMPK PAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGY
Sbjct: 767 LTGFKMHARGWRSIYCMPKLPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGY 826
Query: 841 GGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLS 900
GRLKFLERFAYVNTTIYP+T+IPLLMYCTLPAVCL TN+FI+PQISN+ASI F+SLFLS
Sbjct: 827 NGRLKFLERFAYVNTTIYPITSIPLLMYCTLPAVCLFTNQFIIPQISNIASIWFLSLFLS 886
Query: 901 IFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKAS 960
IFATGILEMRWSGVGIDEWWRNEQFWVIGGVS+HLFAVFQG+LKVLAGIDTNFTVTSKAS
Sbjct: 887 IFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGILKVLAGIDTNFTVTSKAS 946
Query: 961 DEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWV 1020
DEDGDF ELY+FKW ++NLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWV
Sbjct: 947 DEDGDFAELYLFKWTTLLIPPTTLLIVNLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWV 1006
Query: 1021 IVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 1079
IVHLYPFLKGLMGRQNRTPTIVVVWS+LLASIFSLLWVR+DPFT+RVTGPD+ +CGINC
Sbjct: 1007 IVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTSRVTGPDILECGINC 1065
|
|
| TAIR|locus:2127776 CESA1 "cellulose synthase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2136308 CESA2 "cellulose synthase A2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2176090 CESA6 "cellulose synthase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2052576 CESA9 "cellulose synthase A9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2040080 CESA10 "cellulose synthase 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2124167 IRX1 "IRREGULAR XYLEM 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2178193 CESA5 "cellulose synthase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2172457 CESA4 "cellulose synthase A4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2178935 IRX3 "IRREGULAR XYLEM 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A2XN66 | CESA2_ORYSI | 2, ., 4, ., 1, ., 1, 2 | 0.8114 | 0.9786 | 0.9841 | N/A | no |
| A2Z1C8 | CESA9_ORYSI | 2, ., 4, ., 1, ., 1, 2 | 0.6825 | 0.9434 | 0.9649 | N/A | no |
| Q84M43 | CESA2_ORYSJ | 2, ., 4, ., 1, ., 1, 2 | 0.8114 | 0.9786 | 0.9841 | no | no |
| A2XNT2 | CESA5_ORYSI | 2, ., 4, ., 1, ., 1, 2 | 0.6721 | 0.9759 | 0.9642 | N/A | no |
| A2Y0X2 | CESA1_ORYSI | 2, ., 4, ., 1, ., 1, 2 | 0.7088 | 0.9657 | 0.9684 | N/A | no |
| Q941L0 | CESA3_ARATH | 2, ., 4, ., 1, ., 1, 2 | 0.8582 | 0.9870 | 1.0 | yes | no |
| Q6AT26 | CESA1_ORYSJ | 2, ., 4, ., 1, ., 1, 2 | 0.7088 | 0.9657 | 0.9684 | no | no |
| Q84ZN6 | CESA8_ORYSJ | 2, ., 4, ., 1, ., 1, 2 | 0.8206 | 0.9823 | 0.9805 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.4.1 | 0.998 |
| 4th Layer | 2.4.1.12 | 0.994 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
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 | estExt_Genewise1_v1.C_LG_I1792 | cellulose synthase (EC-2.4.1.12) (1081 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | ACT9 | • | 0.686 | ||||||||
 | MYB103 | • | 0.510 | ||||||||
 | grail3.0064002701 | • | 0.510 | ||||||||
 | lac1 | • | 0.510 | ||||||||
 | lac90 | • | 0.510 | ||||||||
 | lac110 | • | 0.510 | ||||||||
 | lac2 | • | 0.510 | ||||||||
 | 4CL1 | • | 0.510 | ||||||||
 | CCR | • | 0.508 | ||||||||
 | PAL2 | • | 0.507 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1079 | |||
| PLN02638 | 1079 | PLN02638, PLN02638, cellulose synthase A (UDP-form | 0.0 | |
| PLN02400 | 1085 | PLN02400, PLN02400, cellulose synthase | 0.0 | |
| PLN02436 | 1094 | PLN02436, PLN02436, cellulose synthase A | 0.0 | |
| PLN02189 | 1040 | PLN02189, PLN02189, cellulose synthase | 0.0 | |
| PLN02915 | 1044 | PLN02915, PLN02915, cellulose synthase A [UDP-form | 0.0 | |
| pfam03552 | 716 | pfam03552, Cellulose_synt, Cellulose synthase | 0.0 | |
| PLN02195 | 977 | PLN02195, PLN02195, cellulose synthase A | 0.0 | |
| PLN02248 | 1135 | PLN02248, PLN02248, cellulose synthase-like protei | 0.0 | |
| PLN02190 | 756 | PLN02190, PLN02190, cellulose synthase-like protei | 1e-144 | |
| PLN02893 | 734 | PLN02893, PLN02893, Cellulose synthase-like protei | 1e-93 | |
| PLN02893 | 734 | PLN02893, PLN02893, Cellulose synthase-like protei | 2e-61 | |
| cd06421 | 234 | cd06421, CESA_CelA_like, CESA_CelA_like are involv | 4e-14 | |
| cd06421 | 234 | cd06421, CESA_CelA_like, CESA_CelA_like are involv | 7e-13 | |
| TIGR03030 | 713 | TIGR03030, CelA, cellulose synthase catalytic subu | 9e-13 | |
| PRK11498 | 852 | PRK11498, bcsA, cellulose synthase catalytic subun | 5e-11 | |
| COG1215 | 439 | COG1215, COG1215, Glycosyltransferases, probably i | 5e-11 | |
| PLN02195 | 977 | PLN02195, PLN02195, cellulose synthase A | 6e-10 | |
| TIGR03030 | 713 | TIGR03030, CelA, cellulose synthase catalytic subu | 2e-07 | |
| TIGR03030 | 713 | TIGR03030, CelA, cellulose synthase catalytic subu | 2e-07 | |
| pfam13632 | 194 | pfam13632, Glyco_trans_2_3, Glycosyl transferase f | 1e-05 | |
| cd06423 | 180 | cd06423, CESA_like, CESA_like is the cellulose syn | 2e-05 | |
| cd06421 | 234 | cd06421, CESA_CelA_like, CESA_CelA_like are involv | 8e-05 | |
| pfam14446 | 55 | pfam14446, Prok-RING_1, Prokaryotic RING finger fa | 2e-04 | |
| PRK11498 | 852 | PRK11498, bcsA, cellulose synthase catalytic subun | 0.004 |
| >gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic subunit | Back alignment and domain information |
|---|
Score = 2321 bits (6017), Expect = 0.0
Identities = 996/1080 (92%), Positives = 1037/1080 (96%), Gaps = 2/1080 (0%)
Query: 1 MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQ 60
MESEGETG K +K+ GGQVCQICGDNVGKTVDG PFVACDVCAFPVCRPCYEYERKDGNQ
Sbjct: 1 MESEGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQ 60
Query: 61 SCPQCKTRYKKHKGSPAILGDREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYG 120
SCPQCKT+YK+HKGSPAILGD EEDGDADDGASDFNY S NQ+QKQKI+ERMLSW M G
Sbjct: 61 SCPQCKTKYKRHKGSPAILGDEEEDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSG 120
Query: 121 QGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDIN 180
+GED AP YD EVSHNHIP LT GQ VSGELSAASPE LSMASPG G GKRI Y+ D+N
Sbjct: 121 RGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPERLSMASPGAG-GKRIPYASDVN 179
Query: 181 QSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSE-RGGGDIDAS 239
QSP+IRVVDPVREFGSPGLGNVAWKERVDGWKMKQ+KN +PMSTG A SE RGGGDIDAS
Sbjct: 180 QSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDAS 239
Query: 240 TDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIA 299
TDVL+DD+LLNDEARQPLSRKV IPSSRINPYRMVI LRL+IL IFL+YRI NPV NA A
Sbjct: 240 TDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYA 299
Query: 300 LWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVD 359
LWLISVICEIWFA+SWI DQFPKWLPVNRETYLDRL+LRY+REGEPSQLAAVDIFVSTVD
Sbjct: 300 LWLISVICEIWFALSWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVD 359
Query: 360 PLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKY 419
PLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKY
Sbjct: 360 PLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKY 419
Query: 420 NIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWV 479
NIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFK+RINGLVAKAQK+PEEGW+
Sbjct: 420 NIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWI 479
Query: 480 MQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMN 539
MQDGTPWPGNNTRDHPGMIQVFLG +GGLD EGNELPRLVYVSREKRPGFQHHKKAGAMN
Sbjct: 480 MQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMN 539
Query: 540 ALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDR 599
ALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCF+MDPNLGK VCYVQFPQRFDGIDR
Sbjct: 540 ALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDR 599
Query: 600 NDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLF 659
NDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPP+KPKH+KPG LSSL
Sbjct: 600 NDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKPKHKKPGFLSSLC 659
Query: 660 GGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEK 719
GGSRKK+SKSSKKGSDKKKS KHVDPTVP+F+LEDIEEGVEGAGFDDEKSLLMSQMSLEK
Sbjct: 660 GGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLMSQMSLEK 719
Query: 720 RFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTED 779
RFGQSAVFVASTLMENGGVPQSAT E+LLKEAIHVISCGYEDKT+WGSEIGWIYGSVTED
Sbjct: 720 RFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTED 779
Query: 780 ILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYG 839
ILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYG
Sbjct: 780 ILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYG 839
Query: 840 YGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFL 899
YGGRLK+LERFAYVNTTIYP+T+IPLL+YCTLPAVCLLT KFI+PQISN+ASI FISLFL
Sbjct: 840 YGGRLKWLERFAYVNTTIYPITSIPLLLYCTLPAVCLLTGKFIIPQISNIASIWFISLFL 899
Query: 900 SIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKA 959
SIFATGILEMRWSGVGIDEWWRNEQFWVIGGVS+HLFAVFQGLLKVLAGIDTNFTVTSKA
Sbjct: 900 SIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKA 959
Query: 960 SDEDGDFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFW 1019
SDEDGDF ELYMFKWTTLLIPPTTLL+INLVGVVAG+SYAINSGYQSWGPLFGKLFFAFW
Sbjct: 960 SDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFW 1019
Query: 1020 VIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 1079
VIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVR+DPFTTRVTGPDVEQCGINC
Sbjct: 1020 VIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1079
|
Length = 1079 |
| >gnl|CDD|215224 PLN02400, PLN02400, cellulose synthase | Back alignment and domain information |
|---|
| >gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A | Back alignment and domain information |
|---|
| >gnl|CDD|215121 PLN02189, PLN02189, cellulose synthase | Back alignment and domain information |
|---|
| >gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic subunit | Back alignment and domain information |
|---|
| >gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase | Back alignment and domain information |
|---|
| >gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A | Back alignment and domain information |
|---|
| >gnl|CDD|215138 PLN02248, PLN02248, cellulose synthase-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|215122 PLN02190, PLN02190, cellulose synthase-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|215483 PLN02893, PLN02893, Cellulose synthase-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|215483 PLN02893, PLN02893, Cellulose synthase-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
| >gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
| >gnl|CDD|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming) | Back alignment and domain information |
|---|
| >gnl|CDD|236918 PRK11498, bcsA, cellulose synthase catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A | Back alignment and domain information |
|---|
| >gnl|CDD|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming) | Back alignment and domain information |
|---|
| >gnl|CDD|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming) | Back alignment and domain information |
|---|
| >gnl|CDD|222273 pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 2 | Back alignment and domain information |
|---|
| >gnl|CDD|133045 cd06423, CESA_like, CESA_like is the cellulose synthase superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
| >gnl|CDD|222758 pfam14446, Prok-RING_1, Prokaryotic RING finger family 1 | Back alignment and domain information |
|---|
| >gnl|CDD|236918 PRK11498, bcsA, cellulose synthase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1079 | |||
| PLN02638 | 1079 | cellulose synthase A (UDP-forming), catalytic subu | 100.0 | |
| PLN02400 | 1085 | cellulose synthase | 100.0 | |
| PLN02436 | 1094 | cellulose synthase A | 100.0 | |
| PLN02915 | 1044 | cellulose synthase A [UDP-forming], catalytic subu | 100.0 | |
| PLN02189 | 1040 | cellulose synthase | 100.0 | |
| PLN02195 | 977 | cellulose synthase A | 100.0 | |
| PLN02248 | 1135 | cellulose synthase-like protein | 100.0 | |
| PF03552 | 720 | Cellulose_synt: Cellulose synthase; InterPro: IPR0 | 100.0 | |
| PLN02190 | 756 | cellulose synthase-like protein | 100.0 | |
| PLN02893 | 734 | Cellulose synthase-like protein | 100.0 | |
| TIGR03030 | 713 | CelA cellulose synthase catalytic subunit (UDP-for | 100.0 | |
| PRK11498 | 852 | bcsA cellulose synthase catalytic subunit; Provisi | 100.0 | |
| PF14569 | 80 | zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A. | 100.0 | |
| PRK05454 | 691 | glucosyltransferase MdoH; Provisional | 100.0 | |
| cd04191 | 254 | Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon | 100.0 | |
| COG1215 | 439 | Glycosyltransferases, probably involved in cell wa | 99.97 | |
| PRK14583 | 444 | hmsR N-glycosyltransferase; Provisional | 99.97 | |
| PRK11204 | 420 | N-glycosyltransferase; Provisional | 99.96 | |
| TIGR03111 | 439 | glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0 | 99.96 | |
| PRK14716 | 504 | bacteriophage N4 adsorption protein B; Provisional | 99.94 | |
| cd06421 | 234 | CESA_CelA_like CESA_CelA_like are involved in the | 99.93 | |
| PRK11234 | 727 | nfrB bacteriophage N4 adsorption protein B; Provis | 99.93 | |
| cd06437 | 232 | CESA_CaSu_A2 Cellulose synthase catalytic subunit | 99.92 | |
| cd06435 | 236 | CESA_NdvC_like NdvC_like proteins in this family a | 99.91 | |
| cd06427 | 241 | CESA_like_2 CESA_like_2 is a member of the cellulo | 99.9 | |
| PF13641 | 228 | Glyco_tranf_2_3: Glycosyltransferase like family 2 | 99.88 | |
| TIGR03472 | 373 | HpnI hopanoid biosynthesis associated glycosyl tra | 99.84 | |
| cd04190 | 244 | Chitin_synth_C C-terminal domain of Chitin Synthas | 99.83 | |
| PRK15489 | 703 | nfrB bacteriophage N4 adsorption protein B; Provis | 99.83 | |
| cd04192 | 229 | GT_2_like_e Subfamily of Glycosyltransferase Famil | 99.81 | |
| cd02520 | 196 | Glucosylceramide_synthase Glucosylceramide synthas | 99.79 | |
| COG2943 | 736 | MdoH Membrane glycosyltransferase [Cell envelope b | 99.77 | |
| cd06434 | 235 | GT2_HAS Hyaluronan synthases catalyze polymerizati | 99.77 | |
| cd06439 | 251 | CESA_like_1 CESA_like_1 is a member of the cellulo | 99.74 | |
| TIGR03469 | 384 | HonB hopene-associated glycosyltransferase HpnB. T | 99.74 | |
| cd02525 | 249 | Succinoglycan_BP_ExoA ExoA is involved in the bios | 99.66 | |
| PF13632 | 193 | Glyco_trans_2_3: Glycosyl transferase family group | 99.63 | |
| cd06436 | 191 | GlcNAc-1-P_transferase N-acetyl-glucosamine transf | 99.51 | |
| cd06438 | 183 | EpsO_like EpsO protein participates in the methano | 99.42 | |
| cd04184 | 202 | GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot | 99.39 | |
| cd04195 | 201 | GT2_AmsE_like GT2_AmsE_like is involved in exopoly | 99.35 | |
| PF13506 | 175 | Glyco_transf_21: Glycosyl transferase family 21 | 99.21 | |
| cd06433 | 202 | GT_2_WfgS_like WfgS and WfeV are involved in O-ant | 99.2 | |
| PF03142 | 527 | Chitin_synth_2: Chitin synthase; InterPro: IPR0048 | 99.17 | |
| cd04196 | 214 | GT_2_like_d Subfamily of Glycosyltransferase Famil | 99.13 | |
| cd02510 | 299 | pp-GalNAc-T pp-GalNAc-T initiates the formation of | 99.11 | |
| cd04186 | 166 | GT_2_like_c Subfamily of Glycosyltransferase Famil | 99.05 | |
| cd06420 | 182 | GT2_Chondriotin_Pol_N N-terminal domain of Chondro | 99.04 | |
| cd02522 | 221 | GT_2_like_a GT_2_like_a represents a glycosyltrans | 99.04 | |
| PF14570 | 48 | zf-RING_4: RING/Ubox like zinc-binding domain; PDB | 99.0 | |
| cd06423 | 180 | CESA_like CESA_like is the cellulose synthase supe | 98.98 | |
| PLN02726 | 243 | dolichyl-phosphate beta-D-mannosyltransferase | 98.96 | |
| cd02526 | 237 | GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr | 98.94 | |
| cd06913 | 219 | beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran | 98.93 | |
| cd06442 | 224 | DPM1_like DPM1_like represents putative enzymes si | 98.92 | |
| PF00535 | 169 | Glycos_transf_2: Glycosyl transferase family 2; In | 98.91 | |
| cd04185 | 202 | GT_2_like_b Subfamily of Glycosyltransferase Famil | 98.9 | |
| cd04188 | 211 | DPG_synthase DPG_synthase is involved in protein N | 98.63 | |
| PRK10073 | 328 | putative glycosyl transferase; Provisional | 98.61 | |
| cd04179 | 185 | DPM_DPG-synthase_like DPM_DPG-synthase_like is a m | 98.58 | |
| PRK10018 | 279 | putative glycosyl transferase; Provisional | 98.56 | |
| TIGR01556 | 281 | rhamnosyltran L-rhamnosyltransferase. Rhamnolipids | 98.54 | |
| PRK10063 | 248 | putative glycosyl transferase; Provisional | 98.45 | |
| KOG2571 | 862 | consensus Chitin synthase/hyaluronan synthase (gly | 98.42 | |
| cd00761 | 156 | Glyco_tranf_GTA_type Glycosyltransferase family A | 98.38 | |
| cd04187 | 181 | DPM1_like_bac Bacterial DPM1_like enzymes are rela | 98.33 | |
| PF10111 | 281 | Glyco_tranf_2_2: Glycosyltransferase like family 2 | 98.27 | |
| COG1216 | 305 | Predicted glycosyltransferases [General function p | 98.27 | |
| PTZ00260 | 333 | dolichyl-phosphate beta-glucosyltransferase; Provi | 98.16 | |
| PRK13915 | 306 | putative glucosyl-3-phosphoglycerate synthase; Pro | 98.03 | |
| KOG2547 | 431 | consensus Ceramide glucosyltransferase [Lipid tran | 97.38 | |
| PRK10714 | 325 | undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi | 97.35 | |
| COG0463 | 291 | WcaA Glycosyltransferases involved in cell wall bi | 96.99 | |
| cd02511 | 229 | Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 | 96.97 | |
| COG5175 | 480 | MOT2 Transcriptional repressor [Transcription] | 96.7 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 95.82 | |
| cd02514 | 334 | GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an es | 95.13 | |
| PF14446 | 54 | Prok-RING_1: Prokaryotic RING finger family 1 | 95.05 | |
| PF02364 | 817 | Glucan_synthase: 1,3-beta-glucan synthase componen | 91.5 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 89.27 | |
| KOG2978 | 238 | consensus Dolichol-phosphate mannosyltransferase [ | 89.13 | |
| PF05290 | 140 | Baculo_IE-1: Baculovirus immediate-early protein ( | 88.49 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 85.37 |
| >PLN02638 cellulose synthase A (UDP-forming), catalytic subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-317 Score=2811.73 Aligned_cols=1077 Identities=92% Similarity=1.494 Sum_probs=1000.6
Q ss_pred CCCCCCCCCccccccCCCcccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCccccccccCCCcccC
Q 001421 1 MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILG 80 (1079)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~g 80 (1079)
||++|+.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|
T Consensus 1 ~~~~~~~~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~g 80 (1079)
T PLN02638 1 MESEGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILG 80 (1079)
T ss_pred CCCCCCCCCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCcccccCCCccchhhhhhhHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCcccCCccccCCCCCCCcccc
Q 001421 81 DREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHL 160 (1079)
Q Consensus 81 d~e~e~~~dd~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1079)
|||||||+||+||||++..+++.+.++++|+|+||+|+||++.|.++..++++.+.+++|+|||||.+++|+++++++|+
T Consensus 81 Deeed~~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 160 (1079)
T PLN02638 81 DEEEDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPERL 160 (1079)
T ss_pred cccccCcchhhhhhhccccccccchhHHHHHHhhhhcccCcCcccccccccccCCCCCCcccccCccccCccCCCCCccc
Confidence 95555558999999998654555668889999999999999998888788877555688999999988999997776766
Q ss_pred ccCCCCCCCCccccccCCCCCCCCccccCCCCcCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCC-CCCCC
Q 001421 161 SMASPGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGG-DIDAS 239 (1079)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 239 (1079)
.+++|.+ .||||||+|+.+.+.+.|.|||+||+++|||||++||||||+||+||+||+.++.++...++++|+ ++++.
T Consensus 161 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 239 (1079)
T PLN02638 161 SMASPGA-GGKRIPYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDAS 239 (1079)
T ss_pred cccCccc-cCCcccccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcCCCCCc
Confidence 6666654 689999999766678899999999999999999999999999999999887766665444565544 33221
Q ss_pred CCCccCccccccccCCCCeeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHhh
Q 001421 240 TDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQ 319 (1079)
Q Consensus 240 ~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q 319 (1079)
++.+++|+++++++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|
T Consensus 240 ~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wll~q 319 (1079)
T PLN02638 240 TDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWILDQ 319 (1079)
T ss_pred cccccccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 22346789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhhhHHhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhh
Q 001421 320 FPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (1079)
Q Consensus 320 ~~kw~Pi~R~~~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf 399 (1079)
++||+||+|+||+|||++||++|+++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+++|||
T Consensus 320 ~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf 399 (1079)
T PLN02638 320 FPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (1079)
T ss_pred cccccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHH
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHhhhhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCccccc
Q 001421 400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWV 479 (1079)
Q Consensus 400 ~al~E~~~fA~~WvpfCkk~~iepRaPe~yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~ 479 (1079)
|||.|||+|||+||||||||+|||||||+||++|.|++|++++|+|++|||+|||||||||+|||+|+++++++|+++|.
T Consensus 400 ~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~ 479 (1079)
T PLN02638 400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWI 479 (1079)
T ss_pred HHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCccccceecccCCCCCCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecC
Q 001421 480 MQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDC 559 (1079)
Q Consensus 480 m~dgt~wpg~~~rdhp~~iqv~l~~~G~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDc 559 (1079)
|+||++|||+++||||+||||+++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+||||||||||||
T Consensus 480 m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDC 559 (1079)
T PLN02638 480 MQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDC 559 (1079)
T ss_pred ccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccCchhhhhhhc
Q 001421 560 DHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (1079)
Q Consensus 560 Dh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALy 639 (1079)
|||+|||++||+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+|+||+|||+||||||+|||+|||
T Consensus 560 DmYiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALY 639 (1079)
T PLN02638 560 DHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (1079)
T ss_pred CcccCchHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCcceeehhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccccCCC-cccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHH
Q 001421 640 GYEPPLKPKHRKPGLLSSLFGGS-RKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLE 718 (1079)
Q Consensus 640 g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1079)
|++||...+..... +++|||++ +++.++.+.+...+++..++.+.+.+++++++++++.++...+++++.++++..++
T Consensus 640 G~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1079)
T PLN02638 640 GYEPPIKPKHKKPG-FLSSLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLMSQMSLE 718 (1079)
T ss_pred CcCCcccccccccc-cccccccccccccccccchhhccccccccccccccccccccccccccccccchhhhhhhhhhhhh
Confidence 99998754322222 22345555 33322222111112222334455667888899888888766777888899999999
Q ss_pred HhccchHHHHHhHhhhcCCCCCCCchHhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecC
Q 001421 719 KRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMP 798 (1079)
Q Consensus 719 ~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p 798 (1079)
++||+|.+|++|++++.+|.+...+++++++||++|+||+||++|+||+||||.|+|+|||+.||++||++|||++|++|
T Consensus 719 ~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~P 798 (1079)
T PLN02638 719 KRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMP 798 (1079)
T ss_pred hhccccHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHHHHHHcCCCcEEecCC
Confidence 99999999999999999999988899999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcccccCCCCHHHHHHHHHHHhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHh
Q 001421 799 KRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLT 878 (1079)
Q Consensus 799 ~~aaf~G~aPetl~a~lkQR~RWA~G~lQIl~~r~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylllPil~Ll~ 878 (1079)
++++|.|++|+|+.+++.||+|||+|++||++++++|+++|++++|+++|||+|+++++||++++++++|+++|++||++
T Consensus 799 ~r~AF~GlAP~~l~d~L~Qr~RWA~G~lqI~fsr~nPl~~G~~~rL~l~QRL~Yl~~~~yp~~sip~liY~llP~l~Ll~ 878 (1079)
T PLN02638 799 KRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVNTTIYPITSIPLLLYCTLPAVCLLT 878 (1079)
T ss_pred CchHhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88889999999999999999999999999999999999987778999999999999999999999999999999999999
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeeCCC
Q 001421 879 NKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSK 958 (1079)
Q Consensus 879 G~~iip~~s~~~l~~fi~lfls~~~~~lLe~rwsgvsi~~wWrneqfW~i~~vsa~LfAvl~aLLk~L~g~~~~F~VTpK 958 (1079)
|++++|.++.+++++|+++|++++++++||++|+|+++++||||||||+|+++++++||++++++|+|++++++|.||+|
T Consensus 879 G~~i~P~vs~~~~~~f~~lfl~~~~~~llE~~wsG~si~~WWrnQr~w~I~~tSa~lfavl~~iLK~Lggs~~~F~VTsK 958 (1079)
T PLN02638 879 GKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSK 958 (1079)
T ss_pred CCccCCCccchHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhhhhheehhhhHHHHHHHHHHHHHHHccCcccceeccc
Confidence 99999998888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccceeecccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 001421 959 ASDEDGDFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRT 1038 (1079)
Q Consensus 959 g~~~d~~~~~ly~f~ws~L~iP~~~Llilnligiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nL~p~l~gL~gR~~r~ 1038 (1079)
..+.++.++++|+|+|+++++|+++|+++|++|+++|+++++++++++|+++++++|+++|+++|+|||++|||||++|+
T Consensus 959 ~~d~~~~~~ely~f~wS~l~iP~ttl~iiNlvaiv~g~~~~~~~g~~~~~~~~~~~~~~~wvv~~l~Pf~kgl~gR~~r~ 1038 (1079)
T PLN02638 959 ASDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRT 1038 (1079)
T ss_pred cccccccccceeEecceehhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 98766678999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHhhheeecCCCCCCCCCCccccCCCC
Q 001421 1039 PTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 1079 (1079)
Q Consensus 1039 p~~v~~~s~~la~~~~~lwv~i~~~~~~~~~~~~~~~~~~~ 1079 (1079)
||||++||++||++||||||+|+||+++++||.+++|||+|
T Consensus 1039 P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1079 (1079)
T PLN02638 1039 PTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1079 (1079)
T ss_pred CeeehHHHHHHHHHHHHHHheecccccCCCCchhhccCcCC
Confidence 99999999999999999999999999999999999999999
|
|
| >PLN02400 cellulose synthase | Back alignment and domain information |
|---|
| >PLN02436 cellulose synthase A | Back alignment and domain information |
|---|
| >PLN02915 cellulose synthase A [UDP-forming], catalytic subunit | Back alignment and domain information |
|---|
| >PLN02189 cellulose synthase | Back alignment and domain information |
|---|
| >PLN02195 cellulose synthase A | Back alignment and domain information |
|---|
| >PLN02248 cellulose synthase-like protein | Back alignment and domain information |
|---|
| >PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals | Back alignment and domain information |
|---|
| >PLN02190 cellulose synthase-like protein | Back alignment and domain information |
|---|
| >PLN02893 Cellulose synthase-like protein | Back alignment and domain information |
|---|
| >TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming) | Back alignment and domain information |
|---|
| >PRK11498 bcsA cellulose synthase catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A | Back alignment and domain information |
|---|
| >PRK05454 glucosyltransferase MdoH; Provisional | Back alignment and domain information |
|---|
| >cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan | Back alignment and domain information |
|---|
| >COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PRK14583 hmsR N-glycosyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK11204 N-glycosyltransferase; Provisional | Back alignment and domain information |
|---|
| >TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111 | Back alignment and domain information |
|---|
| >PRK14716 bacteriophage N4 adsorption protein B; Provisional | Back alignment and domain information |
|---|
| >cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
| >PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional | Back alignment and domain information |
|---|
| >cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex | Back alignment and domain information |
|---|
| >cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase | Back alignment and domain information |
|---|
| >cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily | Back alignment and domain information |
|---|
| >PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A | Back alignment and domain information |
|---|
| >TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI | Back alignment and domain information |
|---|
| >cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin | Back alignment and domain information |
|---|
| >PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional | Back alignment and domain information |
|---|
| >cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
| >cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis | Back alignment and domain information |
|---|
| >COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan | Back alignment and domain information |
|---|
| >cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily | Back alignment and domain information |
|---|
| >TIGR03469 HonB hopene-associated glycosyltransferase HpnB | Back alignment and domain information |
|---|
| >cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan | Back alignment and domain information |
|---|
| >PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2 | Back alignment and domain information |
|---|
| >cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine | Back alignment and domain information |
|---|
| >cd06438 EpsO_like EpsO protein participates in the methanolan synthesis | Back alignment and domain information |
|---|
| >cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis | Back alignment and domain information |
|---|
| >cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis | Back alignment and domain information |
|---|
| >PF13506 Glyco_transf_21: Glycosyl transferase family 21 | Back alignment and domain information |
|---|
| >cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis | Back alignment and domain information |
|---|
| >PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2 | Back alignment and domain information |
|---|
| >cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
| >cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans | Back alignment and domain information |
|---|
| >cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
| >cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase | Back alignment and domain information |
|---|
| >cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function | Back alignment and domain information |
|---|
| >PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B | Back alignment and domain information |
|---|
| >cd06423 CESA_like CESA_like is the cellulose synthase superfamily | Back alignment and domain information |
|---|
| >PLN02726 dolichyl-phosphate beta-D-mannosyltransferase | Back alignment and domain information |
|---|
| >cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase | Back alignment and domain information |
|---|
| >cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine | Back alignment and domain information |
|---|
| >cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1 | Back alignment and domain information |
|---|
| >PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
| >cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
| >cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation | Back alignment and domain information |
|---|
| >PRK10073 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
| >cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily | Back alignment and domain information |
|---|
| >PRK10018 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
| >TIGR01556 rhamnosyltran L-rhamnosyltransferase | Back alignment and domain information |
|---|
| >PRK10063 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
| >KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
| >cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
| >cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1 | Back alignment and domain information |
|---|
| >PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ] | Back alignment and domain information |
|---|
| >COG1216 Predicted glycosyltransferases [General function prediction only] | Back alignment and domain information |
|---|
| >PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional | Back alignment and domain information |
|---|
| >KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
| >PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional | Back alignment and domain information |
|---|
| >COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide | Back alignment and domain information |
|---|
| >COG5175 MOT2 Transcriptional repressor [Transcription] | Back alignment and domain information |
|---|
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
| >cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides | Back alignment and domain information |
|---|
| >PF14446 Prok-RING_1: Prokaryotic RING finger family 1 | Back alignment and domain information |
|---|
| >PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
| >KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only] | Back alignment and domain information |
|---|
| >PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0 | Back alignment and domain information |
|---|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1079 | ||||
| 1weo_A | 93 | Solution Structure Of Ring-Finger In The Catalytic | 2e-24 | ||
| 4hg6_A | 802 | Structure Of A Cellulose Synthase - Cellulose Trans | 2e-05 |
| >pdb|1WEO|A Chain A, Solution Structure Of Ring-Finger In The Catalytic Subunit (Irx3) Of Cellulose Synthase Length = 93 | Back alignment and structure |
|
| >pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate Length = 802 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1 Length = 93 | Back alignment and structure |
|---|
Score = 151 bits (382), Expect = 3e-43
Identities = 51/91 (56%), Positives = 68/91 (74%)
Query: 3 SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSC 62
S G +G K +KN+ GQ C+ICGD +G TV+G+ FVAC+ C FP CRPCYEYER++G Q+C
Sbjct: 2 SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNC 61
Query: 63 PQCKTRYKKHKGSPAILGDREEDGDADDGAS 93
PQCKTRYK+ +GSP + GD +E+ +S
Sbjct: 62 PQCKTRYKRLRGSPRVEGDEDEEDIDSGPSS 92
|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1079 | ||||
| d1weoa_ | 93 | g.44.1.1 (A:) Cellulose synthase A catalytic subun | 5e-50 | |
| d1g25a_ | 65 | g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi | 3e-05 | |
| d1weva_ | 88 | g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu | 6e-04 | |
| d1mm2a_ | 61 | g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens | 0.001 |
| >d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 93 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Cellulose synthase A catalytic subunit 7, IRX3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 168 bits (428), Expect = 5e-50
Identities = 54/92 (58%), Positives = 70/92 (76%), Gaps = 1/92 (1%)
Query: 3 SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSC 62
S G +G K +KN+ GQ C+ICGD +G TV+G+ FVAC+ C FP CRPCYEYER++G Q+C
Sbjct: 2 SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNC 61
Query: 63 PQCKTRYKKHKGSPAILGDREEDGDADDGASD 94
PQCKTRYK+ +GSP + GD +E+ D D G S
Sbjct: 62 PQCKTRYKRLRGSPRVEGDEDEE-DIDSGPSS 92
|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1079 | |||
| d1weoa_ | 93 | Cellulose synthase A catalytic subunit 7, IRX3 {Th | 100.0 | |
| d1xhba2 | 328 | Polypeptide N-acetylgalactosaminyltransferase 1, N | 99.55 | |
| d1qg8a_ | 255 | Spore coat polysaccharide biosynthesis protein Sps | 99.07 | |
| d1omza_ | 265 | Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga | 98.48 | |
| d2bo4a1 | 381 | Mannosylglycerate synthase, MGS {Rhodothermus mari | 96.02 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 94.51 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 94.44 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 92.46 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 85.42 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 83.84 |
| >d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Cellulose synthase A catalytic subunit 7, IRX3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.4e-43 Score=314.84 Aligned_cols=89 Identities=60% Similarity=1.281 Sum_probs=84.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88888787644665887544347775457899930038999997451238989850798898870001134688754599
Q 001421 2 ESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGD 81 (1079)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd 81 (1079)
-|+|++++||++++++|+||||||+||+++|||+|||||||+|||||||||||||||||+|||||||||||||||||+||
T Consensus 1 g~~g~~g~kp~~~~~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr~kgsprv~gD 80 (93)
T d1weoa_ 1 GSSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGD 80 (93)
T ss_dssp CCCSSSSSSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTS
T ss_pred CCCCCCCCCCHHHCCCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCC
T ss_conf 98877799773451552201154632417899888875236986450789999851670274448724552589877787
Q ss_pred CCCCCCCCCC
Q ss_conf 8767888886
Q 001421 82 REEDGDADDG 91 (1079)
Q Consensus 82 ~e~e~~~dd~ 91 (1079)
++||++||-
T Consensus 81 -e~e~~~d~~ 89 (93)
T d1weoa_ 81 -EDEEDIDSG 89 (93)
T ss_dssp -CCCCCSCCC
T ss_pred -CCCCCCCCC
T ss_conf -100143468
|
| >d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]} | Back information, alignment and structure |
|---|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|