Citrus Sinensis ID: 001466

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070---
MVRKKRTEQPSTGGESSESQETSAGGGRGSQRPSERSAPPSQGGGGGGTGYQGSGRGWGPPSQQGGRGGYGGGRGRGGPQQQHYGGTSEYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGGRGGHSGGPTRSSQIPELHQATPTPFSSGVMTQPTQSQAGSSSHSPELSEVSQQFQQLSLPEEVSSSQVIQPAPPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHccccccccEEccccEEEEccccccccccEEEEEEcccccccccccccEEEEEEEEEEEccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccEEEEEcEEccccccccEEEEEEEccEEEEEccccHHHHHHHHHccccccccccHHHHHHHHHHHcccEEEEEEccccccEEEEccccccccccccccccccccEEEHHHHHHHHcccccccccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHcccEEcccccEEEEEEEccccEEEccccccccccccccEEEccccEEEEcccccEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccccHHHHHHHHHcccccccccEEcccccccccHHHHHHHHHHHccccccEEEEEcccccccccccccccEEEEEEEcccccccccccccEEEEEEEEcccccccEEEEEEEcccccHHHHccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccccccccccccccccccccccEEEcccccccccccEEEEEccccccccccccEEEEEccccccHHHHHHHHHHHHHccccccccEEcHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHcccccEEEc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccccEEEEEEEEcccccccHHHHHHHHHHHHHHcHHHcccccccccccccEEccccccccccEEEEEEEccccccccccccEEEEEEEEEEEEccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccEcEEccccccccccccccccEEEEccccccccccccccEEEEEcccHHHcccHHHHHHHHHHHccccccccccHHHHHHHHHHHcccEEEEEcccccEEEEEEEccccccccccEccccccccEEEHHHHHHHHcccEEEcccccccEcccccccccccHHHHHHHcHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHcccEEccccEEEEEEEcccccEEEcccccEEEEcccccEEEccccEEEccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccEEEEEEccccEEEEEEEEEcccccccccHHHHHHHEEEEEEEcccccEEEcccccccccccccccEEEEEcccccccccccccccEEEEEEccccccccHHEEEEEcccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccEccccccccccccccccccccccEEcccccccccccEEEEcccccccccccccEEEEEccccccHHHHHHHHHHHcHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHcHHHHHEEEEc
mvrkkrteqpstggessesqetsagggrgsqrpsersappsqggggggtgyqgsgrgwgppsqqggrggygggrgrggpqqqhyggtseyqgrgrggppqpggrggygggrggvgmgsggrgghsggptrssqipelhqatptpfssgvmtqptqsqagssshspelsEVSQQFQqlslpeevsssqviqpappssksvrfplrpgrgstgtrcIVKANHffaelpdkdlhqydvtitpevtsrgvNRAVMEQLVKLYREShlgkrlpaydgrkslytagplpflskEFRITllddddgqggqrrEREFKVVIKLAARADLHHLGlflqgrqadapqEALQVLDIVLrelpttrycpvgrsfyspdlgrrqplgegleSWRGFYQsirptqmglslnidmsstafieplpviDFVQQLLnrdvssrplsdadRVKIKKALRGVRVEvthrgnmrrkyrisgltsqttgeltfpvdesgtlkSVVEYFYETYGFVIQhtqwpclqvgnqqrpnylpmevckivegqrySKRLNERQITALLKVTCqrphererDIMQTvhhnayhedpyarEFGIKISEKLASVEArilpapwlkyhdtgkekdclpqvgqwnmmnkkmvnggtvNHWICINFSRHVQDSIARGFCFELAQMCYisgmafnpepvippisarpeHVEKVLKTRYHDAMtklgqgkeLDLLIVIlpdnngslygdLKRICetdlglvsqccLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAIsrriplvsdrptiifgadvthphpgedsspsIAAVVAsqdwpevtkYAGLVCAQAHRQELIQDLFKtwqdpvrgavsGGMIKELLISFRRatgqkpqriifyrdgvsegqFYQVLLYELDAIRKACAslepnyqppvtFVVVQKRhhtrlfannhhdrnavdrsgnilpgtvvdskichptefdfylcshagiqgtsrpahyhvlwdenkftadgLQSLTNNLCytyarctrsvsivppaYYAHLAAFRARfymepetsdsgsmtsgtigrggmgggvgarstrgpgvgaavrplpalkeNVKRVMFYC
mvrkkrteqpstggessesqetsagggrgsqrpsersappsqggggGGTGYQGSGRGWGPPSQQGGRGGYGGGRGRGGPQQQHYGGTSEYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGGRGGHSGGPTRSSQIPELHQATPTPFSSGVMTQPTQSQAGSSSHSPELSEVSQQFQQLSLPEEVSSSQViqpappssksvrfplrpgrgstGTRCIVKANHFfaelpdkdlhqYDVTItpevtsrgvnrAVMEQLVKLYReshlgkrlpaydgrkSLYTAGPLPFLSKEFRITLLddddgqggqrrEREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRelpttrycpvgrsfyspdlgrrqPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRdvssrplsdadrvkikkalrgvrvevthrgnmrrkyrisgltsqttgeltfpvdesGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPapwlkyhdtgkEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAisrriplvsdrpTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFrratgqkpqRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLfannhhdrnavdrsgnilPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGTIGRGGMGGGVGARStrgpgvgaavrplpalkenvkrVMFYC
MVRKKRteqpstggessesqetsagggRGSQRPSERSAPPSQggggggtgyqgsgrgwgppsqqggrggygggrgrggpqqqhyggTSEYQgrgrggppqpggrggygggrggvgmgsggrgghsggptrssQIPELHQATPTPFSSGVMTQPTQSQAGssshspelsevsQQFQQLSLPEEVSSSQVIQPAPPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLddddgqggqrrereFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSgsmtsgtigrggmgggvgarstrgpgVGAAVRPLPALKENVKRVMFYC
******************************************************************************************************************************************************************************************************************GTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDD**********REFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDV*********RVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVT***********IAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYM*******************************************************
******************************************************************************************************************************************************************************************************************GTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITL************EREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLG**QPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTF**DESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLN**QITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPG****PSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFA*************NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY***************************************RPLPALKENVKRVMFYC
****************************************************GSGRG***************************GGTSEYQGRGRGGPPQPGGRGGYGGGRGGVGMGS****************PELHQATPTP*******************************************************RFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEP********TSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC
************************************************************************************GG********RG******************************************************************************************************VRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANN*********SGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEP**********************************AVRPLPALKENVKRVMFYC
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MVRKKRTEQPSTGGESSESQETSAGGGRGSQRPSERSAPPSQGGGGGGTGYQGSGRGWGPPSQQGGRGGYGGGRGRGGPQQQHYGGTSEYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGGRGGHSGGPTRSSQIPELHQATPTPFSSGVMTQPTQSQAGSSSHSPELSEVSQQFQQLSLPEEVSSSQVIQPAPPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1073 2.2.26 [Sep-21-2011]
O043791048 Protein argonaute 1 OS=Ar yes no 0.904 0.925 0.822 0.0
Q6EU141082 Protein argonaute 1A OS=O yes no 0.984 0.975 0.755 0.0
Q7XSA21118 Protein argonaute 1B OS=O no no 0.875 0.839 0.838 0.0
Q6K9721011 Protein argonaute 1C OS=O no no 0.816 0.866 0.808 0.0
Q5Z5B21038 Protein argonaute 1D OS=O no no 0.883 0.913 0.758 0.0
Q9XGW1988 Protein argonaute 10 OS=A no no 0.804 0.873 0.773 0.0
Q69VD5979 Protein argonaute PNH1 OS no no 0.805 0.882 0.765 0.0
Q851R21058 Protein argonaute MEL1 OS no no 0.914 0.927 0.549 0.0
Q9SJK3997 Protein argonaute 5 OS=Ar no no 0.849 0.914 0.565 0.0
Q7Y0011049 Protein argonaute 12 OS=O no no 0.792 0.810 0.569 0.0
>sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1 Back     alignment and function desciption
 Score = 1661 bits (4302), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 810/985 (82%), Positives = 877/985 (89%), Gaps = 15/985 (1%)

Query: 89   EYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGGRGGHSGGPTRSSQIPELHQATPTPFSSG 148
            EYQGRGRGGPP            G  G G G  GG S GP +   +PELHQAT +P    
Sbjct: 79   EYQGRGRGGPPH---------QGGRGGYGGGRGGGPSSGPPQRQSVPELHQAT-SPTYQA 128

Query: 149  VMTQPTQSQAGSSSHSPELSEVSQQFQQLSLPEEVSSSQVIQPAPPSSKSVRFPLRPGRG 208
            V +QPT S+  S +  PE + ++QQF+QLS+ E+ + SQ IQP P SSK+ +FP+RPG+G
Sbjct: 129  VSSQPTLSEV-SPTQVPEPTVLAQQFEQLSV-EQGAPSQAIQPIPSSSKAFKFPMRPGKG 186

Query: 209  STGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLP 268
             +G RCIVKANHFFAELPDKDLH YDVTITPEVTSRGVNRAVM+QLV  YR+SHLG RLP
Sbjct: 187  QSGKRCIVKANHFFAELPDKDLHHYDVTITPEVTSRGVNRAVMKQLVDNYRDSHLGSRLP 246

Query: 269  AYDGRKSLYTAGPLPFLSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFL 328
            AYDGRKSLYTAGPLPF SKEFRI LLD++ G GGQRREREFKVVIKL ARADLHHLG+FL
Sbjct: 247  AYDGRKSLYTAGPLPFNSKEFRINLLDEEVGAGGQRREREFKVVIKLVARADLHHLGMFL 306

Query: 329  QGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIR 388
            +G+Q+DAPQEALQVLDIVLRELPT+RY PVGRSFYSPD+G++Q LG+GLESWRGFYQSIR
Sbjct: 307  EGKQSDAPQEALQVLDIVLRELPTSRYIPVGRSFYSPDIGKKQSLGDGLESWRGFYQSIR 366

Query: 389  PTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVT 448
            PTQMGLSLNIDMSSTAFIE  PVI FV  LLNRD+SSRPLSDADRVKIKKALRGV+VEVT
Sbjct: 367  PTQMGLSLNIDMSSTAFIEANPVIQFVCDLLNRDISSRPLSDADRVKIKKALRGVKVEVT 426

Query: 449  HRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQ 508
            HRGNMRRKYRISGLT+  T ELTFPVDE  T KSVVEYF+ETYGF IQHTQ PCLQVGN 
Sbjct: 427  HRGNMRRKYRISGLTAVATRELTFPVDERNTQKSVVEYFHETYGFRIQHTQLPCLQVGNS 486

Query: 509  QRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPY 568
             RPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRP +RE+DI+QTV  N Y +D Y
Sbjct: 487  NRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPIDREKDILQTVQLNDYAKDNY 546

Query: 569  AREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWI 628
            A+EFGIKIS  LASVEARILP PWLKYH++G+E  CLPQVGQWNMMNKKM+NGGTVN+WI
Sbjct: 547  AQEFGIKISTSLASVEARILPPPWLKYHESGREGTCLPQVGQWNMMNKKMINGGTVNNWI 606

Query: 629  CINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMT 688
            CINFSR VQD++AR FC ELAQMCY+SGMAFNPEPV+PP+SARPE VEKVLKTRYHDA +
Sbjct: 607  CINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATS 666

Query: 689  KLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALK 748
            KL QGKE+DLLIVILPDNNGSLYGDLKRICET+LG+VSQCCLTKHVFKMSKQYMANVALK
Sbjct: 667  KLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALK 726

Query: 749  INVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEV 808
            INVKVGGRNTVLVDA+SRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPE+
Sbjct: 727  INVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEI 786

Query: 809  TKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRD 868
            TKYAGLVCAQAHRQELIQDLFK W+DP +G V+GGMIKELLI+FRR+TG KP RIIFYRD
Sbjct: 787  TKYAGLVCAQAHRQELIQDLFKEWKDPQKGVVTGGMIKELLIAFRRSTGHKPLRIIFYRD 846

Query: 869  GVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRS 928
            GVSEGQFYQVLLYELDAIRKACASLE  YQPPVTFVVVQKRHHTRLFA NH+DR++VDRS
Sbjct: 847  GVSEGQFYQVLLYELDAIRKACASLEAGYQPPVTFVVVQKRHHTRLFAQNHNDRHSVDRS 906

Query: 929  GNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLC 988
            GNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDEN FTADGLQSLTNNLC
Sbjct: 907  GNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLC 966

Query: 989  YTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGTIGRGGMGGGVGARSTR 1048
            YTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSM SG++ R   GGG+  RSTR
Sbjct: 967  YTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGSMAR---GGGMAGRSTR 1023

Query: 1049 GPGVGAAVRPLPALKENVKRVMFYC 1073
            GP V AAVRPLPALKENVKRVMFYC
Sbjct: 1024 GPNVNAAVRPLPALKENVKRVMFYC 1048
Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Requires DRB1 for directional loading of the small RNA duplex (guide stand and passenger strand) onto RISC for passenger strand degradation. Unlike animal RISC that associates in high molecular weight complex, Arabidopsis RISC is probably composed only of the AGO1 protein and associated RNA without any other proteins. Associates mainly with miRNAs of 21 nucleotide in length and preferentially recruits small RNAs with a 5' terminal uridine. Associates with 22 nucleotide miRNAs to trigger RDR6-dependent secondary siRNAs biogenesis. This pathway amplifies silencing by using the target RNA as substrate to generate secondary siRNAs. Binds to miR168 which targets its own mRNA for repression, establishing a homeostatic regulatory loop. Involved in antiviral RNA silencing by contributing to viral RNA clearance. Is capable of targeting viral RNAs with more compact structures than AGO7 which favors less structured RNA targets. May not associate with 24 nucleotide siRNAs involved in chromatin silencing. Essential for multiple processes in development. Essential for proper development of leaves and floral organs, and formation of axillary meristems. Like AGO10, required for stem cell function and organ polarity.
Arabidopsis thaliana (taxid: 3702)
>sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1 Back     alignment and function description
>sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3 Back     alignment and function description
>sp|Q6K972|AGO1C_ORYSJ Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1 Back     alignment and function description
>sp|Q5Z5B2|AGO1D_ORYSJ Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1 Back     alignment and function description
>sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1 Back     alignment and function description
>sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1 Back     alignment and function description
>sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SJK3|AGO5_ARATH Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2 Back     alignment and function description
>sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1073
2555706391063 eukaryotic translation initiation factor 0.986 0.996 0.870 0.0
2254642791085 PREDICTED: protein argonaute 1-like [Vit 0.996 0.985 0.831 0.0
2960880131038 unnamed protein product [Vitis vinifera] 0.955 0.987 0.817 0.0
3565600551053 PREDICTED: protein argonaute 1-like [Gly 0.976 0.995 0.833 0.0
2241204741062 argonaute protein group [Populus trichoc 0.874 0.883 0.898 0.0
3565310361058 PREDICTED: protein argonaute 1-like [Gly 0.981 0.995 0.847 0.0
4494392251064 PREDICTED: protein argonaute 1A-like [Cu 0.983 0.991 0.848 0.0
4091279481054 AGO1A [Solanum lycopersicum] gi|40989306 0.972 0.989 0.816 0.0
846889061052 AGO1-1, partial [Nicotiana benthamiana] 0.973 0.993 0.814 0.0
2986763331061 ARGONAUTE 1 [Nicotiana tabacum] 0.980 0.991 0.811 0.0
>gi|255570639|ref|XP_002526275.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223534406|gb|EEF36112.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1812 bits (4694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 937/1077 (87%), Positives = 979/1077 (90%), Gaps = 18/1077 (1%)

Query: 1    MVRKKRTEQPSTGGESSESQETSAGGGRGSQRPSERSAPPSQGGGGGGTGYQGSGRGWGP 60
            MVRK+RTE P++GGESSE  E ++GG   SQRP ER+A        G  G    GR WGP
Sbjct: 1    MVRKRRTEAPASGGESSEPHEAASGG---SQRPYERNA----PPQQGPGGPYQGGRSWGP 53

Query: 61   PSQQGGRGGYGGGRGRGGPQQQHYGGTSEYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGG 120
             SQQGGRGG G GR  G  QQQ YGG  EYQGRGRG           G G  G G  S  
Sbjct: 54   QSQQGGRGGGGRGRSGGMSQQQQYGGGPEYQGRGRGP------PQQGGRGGYGGGRSSSN 107

Query: 121  RGGH-SGGPTRSSQIPELHQATPTPFSSGVMTQPTQSQAGSSSHSPELSEV--SQQFQQL 177
            RGG  S GP+R   +PELHQAT  P+ +GV  Q   S+  SSS  PE S V  +QQ Q+L
Sbjct: 108  RGGPPSVGPSRPP-VPELHQATLAPYQAGVSPQLMPSEGSSSSGPPEPSPVVVAQQMQEL 166

Query: 178  SLPEEVSSSQVIQPAPPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTI 237
            S+ +EVSSSQ IQ  PPSSKS+RFPLRPG+GSTG RCIVKANHFFAELPDKDLHQYDVTI
Sbjct: 167  SIQQEVSSSQPIQAPPPSSKSMRFPLRPGKGSTGIRCIVKANHFFAELPDKDLHQYDVTI 226

Query: 238  TPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDDD 297
            TPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPF+SKEF+ITL+D+D
Sbjct: 227  TPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFISKEFKITLIDED 286

Query: 298  DGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCP 357
            DG GGQRREREF+VVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCP
Sbjct: 287  DGSGGQRREREFRVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCP 346

Query: 358  VGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQ 417
            VGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFV Q
Sbjct: 347  VGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVNQ 406

Query: 418  LLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDES 477
            LLNRDVSSRPLSDADRVKIKKALRGV+VEVTHRGNMRRKYRISGLTSQ T ELTFPVDE 
Sbjct: 407  LLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDER 466

Query: 478  GTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQIT 537
            GT+KSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCK+VEGQRYSKRLNERQIT
Sbjct: 467  GTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKVVEGQRYSKRLNERQIT 526

Query: 538  ALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHD 597
            ALLKVTCQRP ERERDIMQTVHHNAY  DPYA+EFGIKISEKLASVEARILPAPWLKYHD
Sbjct: 527  ALLKVTCQRPQERERDIMQTVHHNAYGNDPYAKEFGIKISEKLASVEARILPAPWLKYHD 586

Query: 598  TGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGM 657
            TG+EKDCLPQVGQWNMMNKKMVNGGTVN+WICINFSR+VQDS+ARGFC+ELAQMCYISGM
Sbjct: 587  TGREKDCLPQVGQWNMMNKKMVNGGTVNNWICINFSRNVQDSVARGFCYELAQMCYISGM 646

Query: 658  AFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRI 717
            AFNPEPV+PP+SARPE VEKVLKTRYHDAMTKL QGKELDLLIVILPDNNGSLYG+LKRI
Sbjct: 647  AFNPEPVLPPVSARPEQVEKVLKTRYHDAMTKLQQGKELDLLIVILPDNNGSLYGELKRI 706

Query: 718  CETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTI 777
            CETDLGLVSQCCLTKHVF+M+KQY+ANVALKINVKVGGRNTVLVDA+SRRIPLVSDRPTI
Sbjct: 707  CETDLGLVSQCCLTKHVFRMNKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTI 766

Query: 778  IFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVR 837
            IFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFK WQDPVR
Sbjct: 767  IFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKEWQDPVR 826

Query: 838  GAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNY 897
            G V+GGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNY
Sbjct: 827  GRVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNY 886

Query: 898  QPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGI 957
            QPPVTFVVVQKRHHTRLFANNH+DRNAVD+SGNILPGTVVDSKICHPTEFDFYLCSHAGI
Sbjct: 887  QPPVTFVVVQKRHHTRLFANNHNDRNAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGI 946

Query: 958  QGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY 1017
            QGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY
Sbjct: 947  QGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY 1006

Query: 1018 MEPETSDSGSMTSGTI-GRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC 1073
            MEPETSDSGSMTSG + GRGGMGGG GARSTRGP   AAVRPLPALKENVKRVMFYC
Sbjct: 1007 MEPETSDSGSMTSGPVGGRGGMGGGAGARSTRGPAASAAVRPLPALKENVKRVMFYC 1063

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225464279|ref|XP_002271225.1| PREDICTED: protein argonaute 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296088013|emb|CBI35296.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356560055|ref|XP_003548311.1| PREDICTED: protein argonaute 1-like [Glycine max] Back     alignment and taxonomy information
>gi|224120474|ref|XP_002318338.1| argonaute protein group [Populus trichocarpa] gi|222859011|gb|EEE96558.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356531036|ref|XP_003534084.1| PREDICTED: protein argonaute 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449439225|ref|XP_004137387.1| PREDICTED: protein argonaute 1A-like [Cucumis sativus] gi|449523970|ref|XP_004168996.1| PREDICTED: protein argonaute 1A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|409127948|gb|AFV15377.1| AGO1A [Solanum lycopersicum] gi|409893066|gb|AFV46190.1| argonaute1-1, partial [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|84688906|gb|ABC61502.1| AGO1-1, partial [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|298676333|dbj|BAJ09698.1| ARGONAUTE 1 [Nicotiana tabacum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1073
TAIR|locus:2170897988 AGO10 "ARGONAUTE 10" [Arabidop 0.805 0.874 0.761 0.0
UNIPROTKB|Q69VD5979 PHN1 "Protein argonaute PNH1" 0.779 0.853 0.780 0.0
UNIPROTKB|Q851R21058 MEL1 "Protein argonaute MEL1" 0.805 0.816 0.602 5.6e-290
TAIR|locus:2057851997 AGO5 "ARGONAUTE 5" [Arabidopsi 0.836 0.900 0.563 1.9e-273
UNIPROTKB|F1P3Z0860 EIF2C3 "Protein argonaute-3" [ 0.580 0.724 0.384 1.5e-188
UNIPROTKB|F1MG44860 EIF2C3 "Protein argonaute-3" [ 0.565 0.705 0.390 2.5e-188
UNIPROTKB|Q9H9G7860 EIF2C3 "Protein argonaute-3" [ 0.565 0.705 0.390 2.5e-188
UNIPROTKB|B0JYP5860 EIF2C2 "Protein argonaute-2" [ 0.575 0.717 0.377 2.5e-188
UNIPROTKB|F1LUS2854 Eif2c3 "Protein Eif2c3" [Rattu 0.565 0.710 0.388 3.2e-188
UNIPROTKB|Q6QME8860 EIF2C2 "Protein argonaute-2" [ 0.575 0.717 0.377 5.1e-188
TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3544 (1252.6 bits), Expect = 0., Sum P(2) = 0.
 Identities = 669/878 (76%), Positives = 750/878 (85%)

Query:   197 KSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVK 256
             K+  F  RPG G+ GT+CIVKANHF A+LP KDL+QYDVTITPEV+S+ VNRA++ +LV+
Sbjct:   124 KNSNFAPRPGFGTLGTKCIVKANHFLADLPTKDLNQYDVTITPEVSSKSVNRAIIAELVR 183

Query:   257 LYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLXXXXXXXXX-XXXXXFKVVIKL 315
             LY+ES LG+RLPAYDGRKSLYTAG LPF  KEF + ++               +KV IK 
Sbjct:   184 LYKESDLGRRLPAYDGRKSLYTAGELPFTWKEFSVKIVDEDDGIINGPKRERSYKVAIKF 243

Query:   316 AARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGE 375
              ARA++HHLG FL G++AD PQEA+Q+LDIVLREL   R+CPVGRSF+SPD+   Q LGE
Sbjct:   244 VARANMHHLGEFLAGKRADCPQEAVQILDIVLRELSVKRFCPVGRSFFSPDIKTPQRLGE 303

Query:   376 GLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVK 435
             GLESW GFYQSIRPTQMGLSLNIDM+S AFIEPLPVI+FV QLL +DV S+PLSD+DRVK
Sbjct:   304 GLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSKPLSDSDRVK 363

Query:   436 IKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVI 495
             IKK LRGV+VEVTHR N+RRKYR++GLT+Q T EL FPVDE+ T+KSV+EYF E YGF I
Sbjct:   364 IKKGLRGVKVEVTHRANVRRKYRVAGLTTQPTRELMFPVDENCTMKSVIEYFQEMYGFTI 423

Query:   496 QHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIM 555
             QHT  PCLQVGNQ++ +YLPME CKIVEGQRY+KRLNE+QITALLKVTCQRP +RE DI+
Sbjct:   424 QHTHLPCLQVGNQKKASYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDIL 483

Query:   556 QTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMN 615
             +TV HNAY +DPYA+EFG+ ISEKLASVEARILPAPWLKYH+ GKEKDCLPQVGQWNMMN
Sbjct:   484 RTVQHNAYDQDPYAKEFGMNISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMN 543

Query:   616 KKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHV 675
             KKM+NG TV+ W C+NFSR VQ+++ARGFC EL QMC +SGM FNPEPVIP  SARP+ V
Sbjct:   544 KKMINGMTVSRWACVNFSRSVQENVARGFCNELGQMCEVSGMEFNPEPVIPIYSARPDQV 603

Query:   676 EKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVF 735
             EK LK  YH +M K  +GKEL+LL+ ILPDNNGSLYGDLKRICET+LGL+SQCCLTKHVF
Sbjct:   604 EKALKHVYHTSMNKT-KGKELELLLAILPDNNGSLYGDLKRICETELGLISQCCLTKHVF 662

Query:   736 KMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPS 795
             K+SKQY+ANV+LKINVK+GGRNTVLVDAIS RIPLVSD PTIIFGADVTHP  GE+SSPS
Sbjct:   663 KISKQYLANVSLKINVKMGGRNTVLVDAISCRIPLVSDIPTIIFGADVTHPENGEESSPS 722

Query:   796 IAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRA 855
             IAAVVASQDWPEVTKYAGLVCAQAHRQELIQDL+KTWQDPVRG VSGGMI++LLISFR+A
Sbjct:   723 IAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLISFRKA 782

Query:   856 TGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLF 915
             TGQKP RIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTF+VVQKRHHTRLF
Sbjct:   783 TGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLF 842

Query:   916 ANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKF 975
             ANNH D+N+ DRSGNILPGTVVD+KICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDEN F
Sbjct:   843 ANNHRDKNSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNF 902

Query:   976 TADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXX 1035
             TADG+QSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY+EPE              
Sbjct:   903 TADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYLEPEIMQDNGSPGKKNTK 962

Query:  1036 XXXXXXXXXXXXXXXXVGAAVRPLPALKENVKRVMFYC 1073
                             VG  V+PLPALKENVKRVMFYC
Sbjct:   963 TTTVGD----------VG--VKPLPALKENVKRVMFYC 988
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003743 "translation initiation factor activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM;ISS
GO:0035019 "somatic stem cell maintenance" evidence=IMP
GO:0010586 "miRNA metabolic process" evidence=IMP
GO:0035198 "miRNA binding" evidence=IDA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009887 "organ morphogenesis" evidence=RCA
GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010050 "vegetative phase change" evidence=RCA
GO:0010051 "xylem and phloem pattern formation" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
GO:0048519 "negative regulation of biological process" evidence=RCA
UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3Z0 EIF2C3 "Protein argonaute-3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MG44 EIF2C3 "Protein argonaute-3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H9G7 EIF2C3 "Protein argonaute-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B0JYP5 EIF2C2 "Protein argonaute-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1LUS2 Eif2c3 "Protein Eif2c3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6QME8 EIF2C2 "Protein argonaute-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6EU14AGO1A_ORYSJNo assigned EC number0.75530.98410.9759yesno
Q6K972AGO1C_ORYSJNo assigned EC number0.80830.81640.8664nono
Q7XSA2AGO1B_ORYSJNo assigned EC number0.83800.87510.8398nono
O04379AGO1_ARATHNo assigned EC number0.82230.90400.9255yesno
Q69VD5PNH1_ORYSJNo assigned EC number0.76500.80520.8825nono
Q9XGW1AGO10_ARATHNo assigned EC number0.77360.80420.8734nono
Q5Z5B2AGO1D_ORYSJNo assigned EC number0.75880.88350.9132nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00000886001
SubName- Full=Chromosome undetermined scaffold_109, whole genome shotgun sequence; (1080 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1073
PLN03202900 PLN03202, PLN03202, protein argonaute; Provisional 0.0
cd04657426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 0.0
pfam02171296 pfam02171, Piwi, Piwi domain 1e-126
smart00950301 smart00950, Piwi, This domain is found in the prot 1e-112
cd02826393 cd02826, Piwi-like, Piwi-like: PIWI domain 3e-75
cd04658448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 2e-74
cd02846114 cd02846, PAZ_argonaute_like, PAZ domain, argonaute 7e-43
pfam02170114 pfam02170, PAZ, PAZ domain 8e-37
pfam12764102 pfam12764, Gly-rich_Ago1, Glycine-rich region of a 5e-27
pfam0869952 pfam08699, DUF1785, Domain of unknown function (DU 6e-23
cd02825115 cd02825, PAZ, PAZ domain, named PAZ after the prot 1e-12
smart00949138 smart00949, PAZ, This domain is named PAZ after th 2e-11
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 9e-08
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 2e-07
pfam12810248 pfam12810, Gly_rich, Glycine rich protein 3e-07
pfam03276582 pfam03276, Gag_spuma, Spumavirus gag protein 3e-06
PRK06958182 PRK06958, PRK06958, single-stranded DNA-binding pr 7e-06
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 2e-05
pfam06682317 pfam06682, DUF1183, Protein of unknown function (D 2e-05
pfam02084239 pfam02084, Bindin, Bindin 2e-05
pfam05268261 pfam05268, GP38, Phage tail fibre adhesin Gp38 2e-05
pfam0717291 pfam07172, GRP, Glycine rich protein family 6e-05
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 9e-05
pfam06682317 pfam06682, DUF1183, Protein of unknown function (D 2e-04
smart00157218 smart00157, PRP, Major prion protein 3e-04
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.001
pfam07466280 pfam07466, DUF1517, Protein of unknown function (D 0.002
PRK12678672 PRK12678, PRK12678, transcription termination fact 0.003
pfam04959211 pfam04959, ARS2, Arsenite-resistance protein 2 0.003
pfam06273496 pfam06273, eIF-4B, Plant specific eukaryotic initi 0.003
PRK06958182 PRK06958, PRK06958, single-stranded DNA-binding pr 0.004
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information 
 Score =  659 bits (1702), Expect = 0.0
 Identities = 351/947 (37%), Positives = 510/947 (53%), Gaps = 107/947 (11%)

Query: 178  SLPEEVSSSQVIQPAPPSSKSVRFPL-RPGRGSTGTRCIVKANHFFAEL--PDKDLHQYD 234
             +P  V   ++ +P    SK  R P+ R G GS G +  +  NHF   +  PD     Y 
Sbjct: 10   VVPPNVVPIKL-EPTKKPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYS 68

Query: 235  VTITPE----VTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFR 290
            V++T E    V  +G+ R V++++ + Y     GK   AYDG KSL+T G LP    EF 
Sbjct: 69   VSLTYEDGRPVDGKGIGRKVIDKVQETYSSDLAGKDF-AYDGEKSLFTVGALPQNKLEFT 127

Query: 291  ITL---------------LDDDDGQGGQRRER------EFKVVIKLAARADLHHLGLFLQ 329
            + L                +     G ++R R       FKV I  AA+  +  +   L+
Sbjct: 128  VVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANALR 187

Query: 330  GRQADAPQEALQVLDIVLRELPTTRYCPVGR-SFYSPDLGRRQPLGEGLESWRGFYQSIR 388
            G++++  Q+AL+VLDI+LR+    + C + R SF+  D      LG G+   RGF+ S R
Sbjct: 188  GQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFR 247

Query: 389  PTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVT 448
             TQ GLSLNID+S+T  ++P PV+DF+  + N++V   P    D  K K+ L+ +RV+V+
Sbjct: 248  TTQGGLSLNIDVSTTMIVQPGPVVDFL--IANQNVRD-PFQ-IDWSKAKRMLKNLRVKVS 303

Query: 449  HRGNMRRKYRISGLTSQTTGELTFPV-------DESGTLK-SVVEYFYETYGFVIQHT-Q 499
               N   +Y+I+GL+ +   E TF +       +E  T++ +V +YF +  G  ++++  
Sbjct: 304  PS-NQ--EYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGIELRYSGD 360

Query: 500  WPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVH 559
             PC+ VG  +RP Y P+E+C +V  QRY+K L+  Q ++L++ + Q+P ER + +   + 
Sbjct: 361  LPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALK 420

Query: 560  HNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMV 619
             + Y  DP  R  GI IS +   VE R+LPAP LK    G  +D  P+ G+WN  NKK+V
Sbjct: 421  SSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLK---VGNGEDFFPRNGRWNFNNKKLV 477

Query: 620  NGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAF-NPEPVIP--PISAR---PE 673
                +  W  +NFS        R    +L +   + G+    P  V    P   R   P 
Sbjct: 478  EPTKIERWAVVNFSARCD---IRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPV 534

Query: 674  HVEKVLKTRYHDAMTKLGQGKELDLLIVILPD-NNGSLYGDLKRICETDLGLVSQCCLTK 732
             VEK+ +       +KL    +   L+ ILP+  N  +YG  K+   ++ G+V+QC    
Sbjct: 535  RVEKMFEQ----IQSKLPGPPQF--LLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAP- 587

Query: 733  HVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDS 792
               +++ QY+ NV LKIN K+GG N++L    S  IPLVS  PTII G DV+H  PG+  
Sbjct: 588  --TRVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSD 645

Query: 793  SPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852
             PSIAAVV+S+ WP +++Y   V  Q+ + E+I  LFK    PV      G+I+ELL+ F
Sbjct: 646  VPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFK----PVGDKDDDGIIRELLLDF 701

Query: 853  RRATGQ-KPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHH 911
              ++G+ KP++II +RDGVSE QF QVL  ELD I +AC  L+ ++ P  T +V QK HH
Sbjct: 702  YTSSGKRKPEQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHH 761

Query: 912  TRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWD 971
            T+ F     D        N+ PGTVVD+KICHP   DFY+C+HAG+ GT+RP HYHVL D
Sbjct: 762  TKFFQAGSPD--------NVPPGTVVDNKICHPRNNDFYMCAHAGMIGTTRPTHYHVLLD 813

Query: 972  ENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYME----PETSDS-G 1026
            E  F+AD LQ L ++L Y Y R T ++S+V P  YAHLAA +   +M+     ETS S G
Sbjct: 814  EIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSHG 873

Query: 1027 SMTSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC 1073
             +TS            GA           V  LP L ENV   MF+C
Sbjct: 874  GITS-----------AGA---------VPVPELPRLHENVASSMFFC 900

Length = 900
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain Back     alignment and domain information
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily Back     alignment and domain information
>gnl|CDD|216914 pfam02170, PAZ, PAZ domain Back     alignment and domain information
>gnl|CDD|221759 pfam12764, Gly-rich_Ago1, Glycine-rich region of argonaut Back     alignment and domain information
>gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785) Back     alignment and domain information
>gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|221784 pfam12810, Gly_rich, Glycine rich protein Back     alignment and domain information
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein Back     alignment and domain information
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183) Back     alignment and domain information
>gnl|CDD|216868 pfam02084, Bindin, Bindin Back     alignment and domain information
>gnl|CDD|147458 pfam05268, GP38, Phage tail fibre adhesin Gp38 Back     alignment and domain information
>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183) Back     alignment and domain information
>gnl|CDD|197548 smart00157, PRP, Major prion protein Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|219420 pfam07466, DUF1517, Protein of unknown function (DUF1517) Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|218350 pfam04959, ARS2, Arsenite-resistance protein 2 Back     alignment and domain information
>gnl|CDD|218967 pfam06273, eIF-4B, Plant specific eukaryotic initiation factor 4B Back     alignment and domain information
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1073
PLN03202900 protein argonaute; Provisional 100.0
KOG1041876 consensus Translation initiation factor 2C (eIF-2C 100.0
KOG1042845 consensus Germ-line stem cell division protein Hiw 100.0
cd04657426 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut 100.0
cd04658448 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain 100.0
cd02826393 Piwi-like Piwi-like: PIWI domain. Domain found in 100.0
PF02171302 Piwi: Piwi domain; InterPro: IPR003165 This domain 100.0
cd04659404 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI 100.0
PF02170135 PAZ: PAZ domain; InterPro: IPR003100 This domain i 99.88
cd02846114 PAZ_argonaute_like PAZ domain, argonaute_like subf 99.84
cd02825115 PAZ PAZ domain, named PAZ after the proteins Piwi 99.82
cd02845117 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In 99.72
PF0869952 DUF1785: Domain of unknown function (DUF1785); Int 99.48
cd02844135 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( 99.43
PF12764104 Gly-rich_Ago1: Glycine-rich region of argonaut; In 99.23
COG1431685 Argonaute homolog, implicated in RNA metabolism [T 99.06
cd02843122 PAZ_dicer_like PAZ domain, dicer_like subfamily. D 98.45
PF12764104 Gly-rich_Ago1: Glycine-rich region of argonaut; In 97.01
PTZ00146293 fibrillarin; Provisional 94.66
KOG1596317 consensus Fibrillarin and related nucleolar RNA-bi 94.07
KOG1596317 consensus Fibrillarin and related nucleolar RNA-bi 93.85
PF13032138 DUF3893: Domain of unknown function (DUF3893) 88.88
COG4371334 Predicted membrane protein [Function unknown] 87.05
smart00157217 PRP Major prion protein. The prion protein is a ma 82.01
>PLN03202 protein argonaute; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.1e-173  Score=1611.99  Aligned_cols=833  Identities=38%  Similarity=0.650  Sum_probs=709.5

Q ss_pred             CCCCccCCCCCCCCCCCCcceEEeeeEEeecC--CCceeeeeEEEcCC----cccchhhHHHHHHHHHHHHhhccCCccc
Q 001466          195 SSKSVRFPLRPGRGSTGTRCIVKANHFFAELP--DKDLHQYDVTITPE----VTSRGVNRAVMEQLVKLYRESHLGKRLP  268 (1073)
Q Consensus       195 ~~~~~~~p~RP~~Gt~G~~v~l~tN~f~v~~~--~~~iy~YdV~i~p~----~~~k~~~r~i~~~l~~~~~~~~~~~~~~  268 (1073)
                      ..+...+|+||+|||.|++|.|+||||+|+++  +..||||||+|+|+    +.+++++++|++++++++... +.+..+
T Consensus        27 ~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~  105 (900)
T PLN03202         27 SKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSD-LAGKDF  105 (900)
T ss_pred             cccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHh-hCCCce
Confidence            34444678899999999999999999999974  67899999999964    445678889999998876443 444467


Q ss_pred             eeeccceEEecCCCCCCcceEEEEEecCCCC------------CC---------CCCCCcEEEEEEEEeeeeChhhHHHH
Q 001466          269 AYDGRKSLYTAGPLPFLSKEFRITLLDDDDG------------QG---------GQRREREFKVVIKLAARADLHHLGLF  327 (1073)
Q Consensus       269 ~yDG~~~lys~~~L~~~~~~~~v~~~~~~~~------------~~---------~~~~~~~~~v~i~~~~~~~l~~l~~~  327 (1073)
                      ||||+++|||+.+||++..+|.|++.+++++            ..         ...+.+.|+|+|++++++++.+|.+|
T Consensus       106 ~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~  185 (900)
T PLN03202        106 AYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANA  185 (900)
T ss_pred             eecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHH
Confidence            9999999999999998777788887643111            00         01246889999999999999999999


Q ss_pred             hccCCCCChHHHHHHHHHHHccCCCCC-cccccccccCCCCCCcccCCCCeEEEeeeeeeeeccCCceEEeeecceeeEe
Q 001466          328 LQGRQADAPQEALQVLDIVLRELPTTR-YCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFI  406 (1073)
Q Consensus       328 l~~~~~~~~~~~iq~Lniilr~~~~~~-~~~~gr~ff~~~~~~~~~lg~Gle~~~G~~~Svr~~~~~l~LniDvs~~~F~  406 (1073)
                      |.+.....+.++||+||||||+.++.. ++.+||+||+++.....+|+.|+|+|+||++|||+++++|+||||+++++||
T Consensus       186 l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~  265 (900)
T PLN03202        186 LRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIV  265 (900)
T ss_pred             HcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeee
Confidence            999887788999999999999988765 8899999998654445678999999999999999999999999999999999


Q ss_pred             cCccHHHHHHHHhcCCCCCCCCChHHHHHHHHHhcCcEEEEeecCCCCceEEEeccCCCCCCceeeeecCC--------C
Q 001466          407 EPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDES--------G  478 (1073)
Q Consensus       407 ~~~~l~d~~~~~~~~~~~~~~~~~~~~~~l~~~L~gl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~--------g  478 (1073)
                      +++||+|+|.++.+...    ....++.++.++|+|++|.++|+   +++|+|.+|++.++++.+|++++.        +
T Consensus       266 ~~~~l~~~l~~~~~~~~----~~~~~~~~~~~~lkGl~V~t~~~---~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~  338 (900)
T PLN03202        266 QPGPVVDFLIANQNVRD----PFQIDWSKAKRMLKNLRVKVSPS---NQEYKITGLSEKPCKEQTFSLKQRNGNGNEVET  338 (900)
T ss_pred             cCCcHHHHHHHhcCcCC----ccchhHHHHHHHhcCCEEEEecC---CceEEEeeccCCCCcceEEEcccCCcccccCCc
Confidence            99999999998765322    11234567999999999999998   579999999999999999986421        3


Q ss_pred             cEeeHHHHHHHHcCCccCCC-CCcEEEeccCCCCccccccceEeccCccccccCCHHHHHHHHHHhcCCchHHHHHHHHH
Q 001466          479 TLKSVVEYFYETYGFVIQHT-QWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQT  557 (1073)
Q Consensus       479 ~~isV~~Yf~~~Y~i~L~~p-~lP~v~vg~~~~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~I~~~  557 (1073)
                      ++|||+|||+++|||+|+|| +||||++|+..+++|||||||.|++||+++++|++.|+++||++|+.+|.+|.+.|.++
T Consensus       339 ~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~  418 (900)
T PLN03202        339 VEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDA  418 (900)
T ss_pred             ceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            58999999999999999996 99999999988999999999999999999999999999999999999999999999999


Q ss_pred             HHhccCCCCccccccceEEcccceEEeeEEcCCCceeecCCCCccccCCcCcceeccCceeeeCceeceeEEEEecCCcc
Q 001466          558 VHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQ  637 (1073)
Q Consensus       558 ~~~~~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~i~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~l~~W~~v~~~~~~~  637 (1073)
                      ++.++++.+++|++|||+|+++|++|+|||||+|+|.|+++.   .+.|.+|+|||++++|++++.+++|+|++|.++  
T Consensus       419 ~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~--  493 (900)
T PLN03202        419 LKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSAR--  493 (900)
T ss_pred             HHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCc--
Confidence            988888888999999999999999999999999999998742   245789999999999999999999999988654  


Q ss_pred             hHHHHHHHHHHHHHHHhcCcccCCCCcccCCCCCh--hhHHHHHHHHHHHHHhhccCCCCceEEEEEeeCC-CCcchhhh
Q 001466          638 DSIARGFCFELAQMCYISGMAFNPEPVIPPISARP--EHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDN-NGSLYGDL  714 (1073)
Q Consensus       638 ~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~~--~~~~~~l~~~~~~a~~~~~~~~~~~lvlvilp~~-~~~~Y~~I  714 (1073)
                       ..++.|++.|.+.|+.+||.+..++.+.....+.  ...+..++..++.+.++++  ..++|||||||++ +.++|+.|
T Consensus       494 -~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~qlv~vIlp~~~~~~~Y~~I  570 (900)
T PLN03202        494 -CDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLP--GPPQFLLCILPERKNSDIYGPW  570 (900)
T ss_pred             -hhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhcc--CCCeEEEEEEcCCCCcchHHHH
Confidence             2578999999999999999997643221111000  1112334555554444332  4689999999974 67899999


Q ss_pred             hHhhhcccCceeeeeeeccccccchhHHHHHHHHHHhhcCccccccccccccCCCccCCCCeEEEEEeecCCCCCCCCCC
Q 001466          715 KRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSP  794 (1073)
Q Consensus       715 K~~~d~~~GI~TQcv~~~~~~k~~~q~~~Nv~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g~~~~p  794 (1073)
                      |++||+++||+||||...   +.++||++|||||||+||||+||.+..+.+..+|++.+.+|||||+||+||+++....|
T Consensus       571 K~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~p  647 (900)
T PLN03202        571 KKKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVP  647 (900)
T ss_pred             HHHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCC
Confidence            999999999999999654   35789999999999999999999987654455788888899999999999999865579


Q ss_pred             cEEEEEeeecCCCccceEEEEEEccCchHhhhhhhhcccCCCcccchhHHHHHHHHHHHHHc-CCCCceEEEEecCCChh
Q 001466          795 SIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRAT-GQKPQRIIFYRDGVSEG  873 (1073)
Q Consensus       795 SiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f~~~~-~~~P~~IIiyRDGVSEg  873 (1073)
                      ||||||||+||+++++|++.+++|.+++|+|++|+....+    ..+++||+++|+.|++.+ +.+|++|||||||||||
T Consensus       648 Siaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~----~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVseG  723 (900)
T PLN03202        648 SIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGD----KDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSES  723 (900)
T ss_pred             ceEEEEeccCcccccceeeEEEecCCCceeeeehhccccc----cchHHHHHHHHHHHHHHcCCCCCceeEEEecCCCHH
Confidence            9999999999888999999999999999999987432111    235789999999999875 68999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCcCceeecccccCCCccceEecc
Q 001466          874 QFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCS  953 (1073)
Q Consensus       874 Qf~~Vl~~El~~Ik~a~~~~~~~y~P~iT~Ivv~KrHhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~S  953 (1073)
                      ||.+|+++|+++|++||++++++|+|+||||||+||||||||+.+        +.+||+||||||++||||..|||||||
T Consensus       724 Q~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~--------~~~N~~pGTvVD~~it~p~~~dFyL~S  795 (900)
T PLN03202        724 QFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG--------SPDNVPPGTVVDNKICHPRNNDFYMCA  795 (900)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC--------CCCCCCCceEeccccccCCcceEEEec
Confidence            999999999999999999998899999999999999999999863        358999999999999999999999999


Q ss_pred             cCCccccccCceEEEEecCCCCCHHHHHHHHHHhhcccccccCccccCchHHHHHHHHHHHhhhcCcCcCCCCCCccCCC
Q 001466          954 HAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGTI 1033 (1073)
Q Consensus       954 h~~~qGTarPthY~VL~De~~~~~d~Lq~lTy~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~~~~d~~s~~~~~~ 1033 (1073)
                      |+++|||||||||+||+||+++++|+||+|||+|||+|+|||++||||||||||||+|+|||+||..+.+++++++++++
T Consensus       796 h~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~~~~~~~~~~~~~  875 (900)
T PLN03202        796 HAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSHGGI  875 (900)
T ss_pred             ccccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhhhccccCCcccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999854322222111111


Q ss_pred             CCCCCCCCCCCccCCCCCCCCCCCCCcccccccccCeeeC
Q 001466         1034 GRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC 1073 (1073)
Q Consensus      1034 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~~~~~M~y~ 1073 (1073)
                      +         +  .    ...+...+++||++|+++||||
T Consensus       876 ~---------~--~----~~~~~~~~~~~h~~~~~~Mfy~  900 (900)
T PLN03202        876 T---------S--A----GAVPVPELPRLHENVASSMFFC  900 (900)
T ss_pred             C---------C--C----CccccccccccchhhcCCeeeC
Confidence            0         0  0    0111345788999999999998

>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>cd02826 Piwi-like Piwi-like: PIWI domain Back     alignment and domain information
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] Back     alignment and domain information
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily Back     alignment and domain information
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily Back     alignment and domain information
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO Back     alignment and domain information
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily Back     alignment and domain information
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins Back     alignment and domain information
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily Back     alignment and domain information
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins Back     alignment and domain information
>PTZ00146 fibrillarin; Provisional Back     alignment and domain information
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] Back     alignment and domain information
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] Back     alignment and domain information
>PF13032 DUF3893: Domain of unknown function (DUF3893) Back     alignment and domain information
>COG4371 Predicted membrane protein [Function unknown] Back     alignment and domain information
>smart00157 PRP Major prion protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1073
4f3t_A861 Human Argonaute-2 - Mir-20a Complex Length = 861 0.0
4ei1_A859 Crystal Structure Of Human Argonaute2 Length = 859 0.0
3vna_A154 Structural Insights Into Small Rna Sorting And Mrna 2e-77
4g0p_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 2e-76
3vnb_A155 Structural Insights Into Small Rna Sorting And Mrna 3e-74
4g0x_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 2e-73
4f1n_A1046 Crystal Structure Of Kluyveromyces Polysporus Argon 2e-46
2yhb_A437 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 8e-46
4g0o_A139 Crystal Structure Of Arabidopsis Thaliana Ago5 Mid 3e-37
2yha_A388 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 5e-29
1r4k_A169 Solution Structure Of The Drosophila Argonaute 1 Pa 1e-28
1si2_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 1e-26
1si3_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 4e-25
4g0m_A150 Crystal Structure Of Arabidopsis Thaliana Ago2 Mid 8e-12
3luc_A138 Crystal Structure Of Mid Domain From Hago2 Length = 5e-09
3luk_A138 Crystal Structure Of Mid Domain From Hago2 Length = 6e-08
1r6z_P509 The Crystal Structure Of The Argonaute2 Paz Domain 5e-07
1vyn_A143 Structure And Nucleic Acid Binding Of The Drosophil 6e-07
1t2r_A123 Structural Basis For 3' End Recognition Of Nucleic 9e-06
3mj0_A124 Crystal Structure Of Drosophia Ago-Paz Domain In Co 1e-05
2xdy_A145 Crystal Structure Of The N. Crassa Qde-2 Ago Mid Do 1e-04
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 Back     alignment and structure 
Iteration: 1

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/835 (43%), Positives = 507/835 (60%), Gaps = 47/835 (5%)
Query: 202  PLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRES 261
            P RP  G++G    ++AN F  ++P  D++ Y++ I PE   R VNR ++E +V+ ++  
Sbjct: 28   PPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQ 87
Query: 262  HLGKRLPAYDGRKSLYTAGPLPFLSK--EFRITLLXXXXXXXXXXXXXXFKVVIKLAARA 319
              G R P +DGRK+LYTA PLP      E  +TL               FKV IK  +  
Sbjct: 88   IFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTL-------PGEGKDRIFKVSIKWVSCV 140
Query: 320  DLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLES 379
             L  L   L GR    P E +Q LD+V+R LP+ RY PVGRSF++   G   PLG G E 
Sbjct: 141  SLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREV 200
Query: 380  WRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNR---DVSSRPLSDADRVKI 436
            W GF+QS+RP+   + LNID+S+TAF +  PVI+FV ++L+    +   +PL+D+ RVK 
Sbjct: 201  WFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKF 260
Query: 437  KKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVD-ESGTLK--SVVEYFYETYGF 493
             K ++G++VE+TH G M+RKYR+  +T +     TFP+  ESG     +V +YF + +  
Sbjct: 261  TKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKL 320
Query: 494  VIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERD 553
            V+++   PCLQVG +Q+  YLP+EVC IV GQR  K+L + Q + +++ T +   +R+ +
Sbjct: 321  VLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEE 380
Query: 554  IMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKD-CLPQVGQWN 612
            I + +   +++ DPY REFGI + +++  V  R+L  P + Y   G+ K    P  G W+
Sbjct: 381  ISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILY--GGRNKAIATPVQGVWD 438
Query: 613  MMNKKMVNGGTVNHWI--CINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISA 670
            M NK+   G  +  W   C    R   +   + F  +L ++   +GM    +P     + 
Sbjct: 439  MRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQ 498
Query: 671  RPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCL 730
              + VE + +   H   T  G    L L++VILP     +Y ++KR+ +T LG+ +QC  
Sbjct: 499  GADSVEPMFR---HLKNTYAG----LQLVVVILPGKT-PVYAEVKRVGDTVLGMATQCVQ 550
Query: 731  TKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGE 790
             K+V + + Q ++N+ LKINVK+GG N +L   + +  P V  +P I  GADVTHP  G+
Sbjct: 551  MKNVQRTTPQTLSNLCLKINVKLGGVNNIL---LPQGRPPVFQQPVIFLGADVTHPPAGD 607
Query: 791  DSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLI 850
               PSIAAVV S D     +Y   V  Q HRQE+IQDL               M++ELLI
Sbjct: 608  GKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLI 653
Query: 851  SFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRH 910
             F ++T  KP RIIFYRDGVSEGQF QVL +EL AIR+AC  LE +YQP +TF+VVQKRH
Sbjct: 654  QFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRH 713
Query: 911  HTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLW 970
            HTRLF  + ++R  V +SGNI  GT VD+KI HPTEFDFYLCSHAGIQGTSRP+HYHVLW
Sbjct: 714  HTRLFCTDKNER--VGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLW 771
Query: 971  DENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 1025
            D+N+F++D LQ LT  LC+TY RCTRSVSI  PAYYAHL AFRAR+++  +  DS
Sbjct: 772  DDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDS 826
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 Back     alignment and structure
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 Back     alignment and structure
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 Back     alignment and structure
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 Back     alignment and structure
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 Back     alignment and structure
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 Back     alignment and structure
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 Back     alignment and structure
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 Back     alignment and structure
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 Back     alignment and structure
>pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz Domain Length = 169 Back     alignment and structure
>pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Of Deoxynucleotide Overhang Length = 149 Back     alignment and structure
>pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Length = 149 Back     alignment and structure
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain Length = 150 Back     alignment and structure
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A Mbp Fusion) Length = 509 Back     alignment and structure
>pdb|1T2R|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids By The Drosophila Argonaute 2 Paz Domain Length = 123 Back     alignment and structure
>pdb|3MJ0|A Chain A, Crystal Structure Of Drosophia Ago-Paz Domain In Complex With 3'-End 2'-O-Methylated Rna Length = 124 Back     alignment and structure
>pdb|2XDY|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid Domain Length = 145 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1073
d1yvua2392 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 1e-109
d1w9ha1316 c.55.3.10 (A:93-408) Hypothetical protein AF1318 { 1e-79
d1u04a2447 c.55.3.10 (A:324-770) Argonaute homologue PF0537 { 2e-70
d1si2a_126 b.34.14.1 (A:) Eukaryotic translation initiation f 2e-46
d1t2sa_123 b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila 7e-46
d1u04a1322 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Py 8e-14
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

 Score =  343 bits (881), Expect = e-109
 Identities = 62/411 (15%), Positives = 130/411 (31%), Gaps = 70/411 (17%)

Query: 624  VNHWICINFSRHVQDSI-ARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTR 682
            V     I+ S + +       F  EL       G+    +     ++   E  ++ L   
Sbjct: 37   VLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPV 96

Query: 683  YHDAMTKLGQGKELDLLIVILPDNNGS-------LYGDLKRICETDLGLVSQCCLTKHVF 735
             +         K++DL+IV L +           LY  +KR       + SQ  L + + 
Sbjct: 97   INKI-------KDVDLVIVFLEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLK 148

Query: 736  KMSKQYMA-NVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSP 794
              + +++  NVA ++  K G     L +        +  +     G D++       +  
Sbjct: 149  NENLKFVLLNVAEQVLAKTGNIPYKLKE--------IEGKVDAFVGIDISRITRDGKTVN 200

Query: 795  SIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRR 854
            ++A         E+ +Y  L    A  ++L +                  I ++     +
Sbjct: 201  AVAFTKIFNSKGELVRYY-LTSYPAFGEKLTEK----------------AIGDVFSLLEK 243

Query: 855  ATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRL 914
               +K  +I+ +RDG            E+ A +K        Y   +  + + KR++ R 
Sbjct: 244  LGFKKGSKIVVHRDGRLYRD-------EVAAFKKYG----ELYGYSLELLEIIKRNNPRF 292

Query: 915  FANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENK 974
            F+N              + G           +       +   +GT +P     ++ E  
Sbjct: 293  FSN-----------EKFIKGYFYK----LSEDSVILATYNQVYEGTHQPIKVRKVYGELP 337

Query: 975  FTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 1025
               + L S   +L        + + +    +Y+          +EP   + 
Sbjct: 338  V--EVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEPIKKEG 386
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 322 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1073
d1yvua2392 Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax 100.0
d1w9ha1316 Hypothetical protein AF1318 {Archaeoglobus fulgidu 100.0
d1u04a2447 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
d1u04a1322 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
d1si2a_126 Eukaryotic translation initiation factor 2C 1, EIF 99.97
d1t2sa_123 Argonaute 2 {Fruit fly (Drosophila melanogaster) [ 99.96
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=0  Score=531.68  Aligned_cols=337  Identities=18%  Similarity=0.154  Sum_probs=269.7

Q ss_pred             EECEEEEEEEC--CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             20526999946--8855689999999999998842954589992068999905599999999999986506999850999
Q 001466          623 TVNHWICINFS--RHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLI  700 (1073)
Q Consensus       623 ~i~~W~~v~~~--~~~~~~~~~~f~~~l~~~~~~~Gi~i~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lvl  700 (1073)
                      .+..|.+|.+.  ++ .+..+++|+++|.+.|+.+||++..+|..........+.+..+...++.       .+.+++++
T Consensus        36 ~~~~~~~i~~~~~~~-~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~  107 (392)
T d1yvua2          36 DVLSVEIISVSVYKK-LEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPVINK-------IKDVDLVI  107 (392)
T ss_dssp             SEEEEEEEEEEC------CHHHHHHHHHHHHHHTTTCEEEEEEEEEEECSSTTHHHHHHHHHHTT-------TSSCSEEE
T ss_pred             CCCCCEEEEEEEEEH-HHHHHHHHHHHHHHHHHHCCCEECCCCCCEEECCCCCCHHHHHHHHHHH-------CCCCCEEE
T ss_conf             634424789999631-0667999999999999862926457886713127751159999999840-------26777899


Q ss_pred             EEEECCCC-------CCHHHHHHHHHCCCCCEEEEEEECCCCCCCHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99508998-------40445557621134710133310210234366-89999999985139623323211014777658
Q 001466          701 VILPDNNG-------SLYGDLKRICETDLGLVSQCCLTKHVFKMSKQ-YMANVALKINVKVGGRNTVLVDAISRRIPLVS  772 (1073)
Q Consensus       701 vilp~~~~-------~~Y~~iK~~~d~~~GI~TQci~~~~~~k~~~q-~~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~~  772 (1073)
                      ||++++..       ++|..||+.| ++.||+||||+.+++.+.+.+ ++.||+||||+||||+||.|.+.     +   
T Consensus       108 vi~~~~~~~~~~~~~~~Y~~IK~~~-~~~gIptQ~i~~~tl~~~~~~~~~~NIalqinaKlGGipw~l~~~-----~---  178 (392)
T d1yvua2         108 VFLEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEI-----E---  178 (392)
T ss_dssp             EEEC----------CHHHHHHHHHH-HHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESCC-----T---
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHH-HCCCCCCEEECHHHCCCCCCHHHHHHHHHHHHHHHCCCCEECCCC-----C---
T ss_conf             9976888866555404799999998-549966489886661689835899999999999849834688788-----9---


Q ss_pred             CCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             99919999962289999999982779996306888653377999716862765521100368976654057999999999
Q 001466          773 DRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF  852 (1073)
Q Consensus       773 ~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E~i~dl~~~~~~p~~~~~~~~mi~e~L~~f  852 (1073)
                      ..+|||||+||+|++++... ++++|++++.|......+......|..++|++.                +++.++|..|
T Consensus       179 ~~~tmiIGiDv~h~~~~~~~-~~~v~~~~~~~~~g~~~~~~~~~~~~~~ee~~~----------------~~~~~~l~~~  241 (392)
T d1yvua2         179 GKVDAFVGIDISRITRDGKT-VNAVAFTKIFNSKGELVRYYLTSYPAFGEKLTE----------------KAIGDVFSLL  241 (392)
T ss_dssp             TCCSEEEEECEEECCCSSSC-CCEEEEEEEECTTSCEEEEEEEEECSCTTHHHH----------------HHHHHHHHHH
T ss_pred             CCCEEEEEEEEEECCCCCCC-CCEEEEEEEECCCCCEEEEEEEECCCCCHHHHH----------------HHHHHHHHHH
T ss_conf             99759999998715888984-638999999868997789998854776078999----------------9999999999


Q ss_pred             HHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99809999449998257791579999999999999999950999999899999931222322224899988777888886
Q 001466          853 RRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNIL  932 (1073)
Q Consensus       853 ~~~~~~~P~~IIiyRDGVSEgQf~~Vl~~El~~Ik~a~~~~~~~y~P~it~Ivv~KRHhtRff~~~~~~~~~~~~~~N~~  932 (1073)
                      +++++.+|++|||||||+++       ++|+++|++||.++    .|+|+||+|+||||+|||+.+           |++
T Consensus       242 ~~~~~~~P~rIIi~RdG~~~-------~~El~~i~~a~~~~----~pki~~IvV~Krh~~Rff~~~-----------~~~  299 (392)
T d1yvua2         242 EKLGFKKGSKIVVHRDGRLY-------RDEVAAFKKYGELY----GYSLELLEIIKRNNPRFFSNE-----------KFI  299 (392)
T ss_dssp             HHTTCCTTCEEEEEESSCCC-------HHHHHHHHHHHHHH----TCEEEEEEEECSSCCCEECSC-----------SCC
T ss_pred             HHHCCCCCCEEEEEECCCCC-------HHHHHHHHHHHHHC----CCCEEEEEEEECCCEEECCCC-----------CCC
T ss_conf             99649998669999588773-------79999999999864----995899999815882656789-----------999


Q ss_pred             CCEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             73042056667885626702357854544686379994399889888999999952056423676446736787999999
Q 001466          933 PGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAF 1012 (1073)
Q Consensus       933 pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~VL~De~~~~~d~lq~lT~~LCy~y~r~t~sVSip~P~yYA~l~a~ 1012 (1073)
                      +||+|+    .+..++|||+||.++|||+||+||+||+||+  +.|+||++||+|||+|+|||++||+|+|+||||++|+
T Consensus       300 ~Gt~v~----~~~~~~~~~~s~~~~qGT~rP~~Y~vl~d~~--~~d~l~~lt~~Lc~l~~~~t~svslPapi~YA~~lA~  373 (392)
T d1yvua2         300 KGYFYK----LSEDSVILATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITK  373 (392)
T ss_dssp             TTEEEE----BSSSEEEECCSCCCSTTCCCCEEEEEEECSS--CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHH
T ss_pred             CCCEEE----CCCCEEEEEECCCCCCCCCCCCEEEEECCCC--CHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHH
T ss_conf             998771----7989299997688578777885899988989--9899999999977512671899800779999999999


Q ss_pred             HHHHHCCCC
Q ss_conf             975302767
Q 001466         1013 RARFYMEPE 1021 (1073)
Q Consensus      1013 Rar~~~~~~ 1021 (1073)
                      |+|.++++.
T Consensus       374 ~~r~~~~p~  382 (392)
T d1yvua2         374 LMLRGIEPI  382 (392)
T ss_dssp             HHHTCSSCC
T ss_pred             HHHHCCCCC
T ss_conf             975117865
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure