Citrus Sinensis ID: 001472
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1072 | 2.2.26 [Sep-21-2011] | |||||||
| Q8H0T9 | 837 | Katanin p80 WD40 repeat-c | no | no | 0.279 | 0.358 | 0.710 | 1e-139 | |
| O61585 | 690 | Katanin p80 WD40 repeat-c | yes | no | 0.286 | 0.444 | 0.529 | 1e-104 | |
| Q9BVA0 | 655 | Katanin p80 WD40 repeat-c | yes | no | 0.270 | 0.442 | 0.474 | 3e-94 | |
| Q6NVM2 | 655 | Katanin p80 WD40 repeat-c | yes | no | 0.279 | 0.458 | 0.483 | 4e-94 | |
| Q4V7Y7 | 655 | Katanin p80 WD40 repeat-c | N/A | no | 0.297 | 0.487 | 0.459 | 1e-93 | |
| Q5ZIU8 | 657 | Katanin p80 WD40 repeat-c | yes | no | 0.263 | 0.429 | 0.470 | 8e-93 | |
| Q8BG40 | 658 | Katanin p80 WD40 repeat-c | yes | no | 0.256 | 0.417 | 0.481 | 1e-92 | |
| Q7ZUV2 | 694 | Katanin p80 WD40 repeat-c | yes | no | 0.271 | 0.419 | 0.468 | 1e-90 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | yes | no | 0.264 | 0.186 | 0.324 | 3e-38 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.245 | 0.209 | 0.338 | 5e-35 |
| >sp|Q8H0T9|KTNB1_ARATH Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust.
Identities = 216/304 (71%), Positives = 260/304 (85%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
KR YKLQEFVAHSA VNC+ IG+K+ R L+TGG+D KVNLWAIGKP A++SL G SS +D
Sbjct: 4 KRAYKLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGID 63
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
SV FD++EVLV AGA++G IKLWDLEE+K+VRTLTGH+SNC +V+FHPFGEFFASG +DT
Sbjct: 64 SVTFDASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT 123
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
NLKIWDIRKKGCIHTYKGHTRG+N +RFTPDGRWVVSGG DN+VKVWDLTAGKLL +FK
Sbjct: 124 NLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKS 183
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
HEG I+S+DFHP EFLLATGSADRTVKFWDLETFELIGS PE GV ++F+PDG+T+
Sbjct: 184 HEGQIQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGKTVL 243
Query: 243 SGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEP 302
G ++LK++SWEP+ CHD VD+GWS L D+ +++GKLLGCS+ ++ VG+WV D+S EP
Sbjct: 244 CGLQESLKIFSWEPIRCHDGVDVGWSRLSDMNVHEGKLLGCSYNQSCVGVWVVDLSRTEP 303
Query: 303 YGVG 306
G
Sbjct: 304 CMAG 307
|
May participate in a complex which severs microtubules in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Arabidopsis thaliana (taxid: 3702) |
| >sp|O61585|KTNB1_STRPU Katanin p80 WD40 repeat-containing subunit B1 OS=Strongylocentrotus purpuratus GN=KATNB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 163/308 (52%), Positives = 230/308 (74%), Gaps = 1/308 (0%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
KR +KLQE VAHS+NVNC+++G + R ++TGG+D+KVNLWA+GK ++SL G +SPVD
Sbjct: 4 KRAWKLQELVAHSSNVNCLALGPMSGRVMVTGGEDKKVNLWAVGKQNCIISLSGHTSPVD 63
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
SV F+S+E LV+AG+ +G +K++DLE +K+VRTLTGH+++ ++FHPFGEF ASG DT
Sbjct: 64 SVKFNSSEELVVAGSQSGTMKIYDLEPAKIVRTLTGHRNSIRCMDFHPFGEFVASGSTDT 123
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
N+K+WD+R+KGCI+TYKGH+ +N I+F+PDG+W+V+ D +K+WDLT GKL +FK
Sbjct: 124 NVKLWDVRRKGCIYTYKGHSDQVNMIKFSPDGKWLVTASEDTTIKLWDLTMGKLFQEFKN 183
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
H G + I+FHP EFLLA+GS+DRTV+FWDLETF+L+ ST P + V +I+FHPDG LF
Sbjct: 184 HTGGVTGIEFHPNEFLLASGSSDRTVQFWDLETFQLVSSTSPGASAVRSISFHPDGSYLF 243
Query: 243 SGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEP 302
D L + WEP+ C D+ +GW + D I +L+G SF +V ++VAD+S +
Sbjct: 244 CSSQDMLHAFGWEPIRCFDTFSVGWGKVADTVIASTQLIGASFNATNVSVYVADLSRMST 303
Query: 303 YGVGAPEP 310
G+ A EP
Sbjct: 304 TGI-AQEP 310
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Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Strongylocentrotus purpuratus (taxid: 7668) |
| >sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (890), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 148/312 (47%), Positives = 224/312 (71%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
+ K +KLQE VAH++NV+ + +GK + R L TGGDD +VNLW+I KP +MSL G +SP
Sbjct: 6 VTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP 65
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SV ++ E L++AG+ +G I++WDLE +K++RTL GHK+N +++FHP+GEF ASG
Sbjct: 66 VESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQ 125
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTN+K+WDIR+KGC+ Y+GH++ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +F
Sbjct: 126 DTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEF 185
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
H G + ++FHP E+LLA+GS+DRT++FWDLE F+++ E V ++ F+PDG
Sbjct: 186 PGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCC 245
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
L+SG D+L+VY WEP C D V + W + DL I + +L+G +F +++V +V D++ V
Sbjct: 246 LYSGCQDSLRVYGWEPERCFDVVLVNWGKVADLAICNDQLIGVAFSQSNVSSYVVDLTRV 305
Query: 301 EPYGVGAPEPDQ 312
G A +P Q
Sbjct: 306 TRTGTVARDPVQ 317
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Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth. Homo sapiens (taxid: 9606) |
| >sp|Q6NVM2|KTNB1_XENTR Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (889), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 149/308 (48%), Positives = 222/308 (72%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
K +KLQE VAH ++V+ + +GK + R + TGGDD +VNLW++ KP +MSL G ++PV+
Sbjct: 8 KTTWKLQEIVAHGSSVSSVVLGKSSGRLVATGGDDCRVNLWSVNKPNCIMSLTGHTTPVE 67
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
SV F++AE L++AG+ +G +++WDLE +K++RTL GHK+N +++FHP+G+F ASG +DT
Sbjct: 68 SVRFNNAEELIVAGSQSGSLRVWDLEAAKILRTLMGHKANVCSLDFHPYGDFVASGSLDT 127
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
N+K+WD+R+KGC+ YKGHT+ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +
Sbjct: 128 NIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSE 187
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
H+G + I+FHP E+LLA+GSADRTV+FWDLE F+LIG T E V AI F DG +F
Sbjct: 188 HKGPVNIIEFHPNEYLLASGSADRTVRFWDLEKFQLIGCTEGETIPVRAILFSSDGGCIF 247
Query: 243 SGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEP 302
G D L+VY WEP C D+V +GW + DL I + +L+G S ++++ +V D++ V+
Sbjct: 248 CGGRDALRVYGWEPDQCFDTVPVGWGKVCDLAICNKQLIGVSSAQSTISSFVVDLTRVKM 307
Query: 303 YGVGAPEP 310
G P
Sbjct: 308 TGCAPQGP 315
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Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Xenopus tropicalis (taxid: 8364) |
| >sp|Q4V7Y7|KTNB1_XENLA Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 345 bits (885), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 148/322 (45%), Positives = 228/322 (70%), Gaps = 3/322 (0%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
K +KLQE VAH +V+ + +G+ + R + TGGDD +V+LW++ KP +MSL G ++PV+
Sbjct: 8 KTTWKLQEIVAHGCSVSSVVLGRSSGRLVATGGDDCRVHLWSVNKPNCIMSLTGHTTPVE 67
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
SV F+++E L++AG+ +G +++WDLE +K++RTL GHK+N ++++FHP+GEF ASG +DT
Sbjct: 68 SVRFNNSEELIVAGSQSGSLRIWDLEAAKILRTLMGHKANVSSLDFHPYGEFVASGSLDT 127
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
N+K+WD+R+KGC+ YKGHT+ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +
Sbjct: 128 NIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSE 187
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
H+G + I+FHP E+LLA+GSADRTV+FWDLE F+L+G T E V AI F DG +F
Sbjct: 188 HKGPVNIIEFHPNEYLLASGSADRTVRFWDLEKFQLVGCTEGETIPVRAILFSNDGGCIF 247
Query: 243 SGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEP 302
G D+L+VY WEP C D+V +GW + DL I + +L+G S ++++ +V D++ V+
Sbjct: 248 CGGKDSLRVYGWEPDQCFDTVPVGWGKVSDLAICNNQLIGVSSAQSNISSFVVDLTRVKM 307
Query: 303 YGVGAPEPDQSICTEVKFNPPG 324
G P + E+ + P
Sbjct: 308 TGCA---PQGPVPAEIPISQPA 326
|
Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Xenopus laevis (taxid: 8355) |
| >sp|Q5ZIU8|KTNB1_CHICK Katanin p80 WD40 repeat-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 342 bits (878), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 143/304 (47%), Positives = 215/304 (70%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
+ K +KLQE VAHS+NV+ + +GK R L TGGDD +VN+W++ KP +MSL G ++P
Sbjct: 6 VTKTAWKLQEIVAHSSNVSSLVLGKSTGRLLATGGDDCRVNVWSVNKPNCVMSLTGHTTP 65
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
++S+ + E L++AG+ +G I++WDLE +K++RTL GHK+N +++FHP+G F ASG +
Sbjct: 66 IESLQISAKEELIVAGSQSGSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSFVASGSL 125
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DT++K+WD+R+KGCI YK HT+ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +F
Sbjct: 126 DTDIKLWDVRRKGCIFKYKSHTQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKVMFEF 185
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
H G + ++FHP E+LLA+GS+DRT++FWDLE F ++ E T V I F+PDG
Sbjct: 186 TGHSGPVNVVEFHPSEYLLASGSSDRTIRFWDLEKFHVVSCIEEEATPVRCILFNPDGCC 245
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
L+ GF D+L+VY WEP C D V + W + DL + +L+G SF +++V +V D+S V
Sbjct: 246 LYGGFQDSLRVYGWEPERCFDVVVVNWGKVADLSVCHNQLIGVSFAQSTVSSFVVDLSRV 305
Query: 301 EPYG 304
G
Sbjct: 306 TKSG 309
|
Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Gallus gallus (taxid: 9031) |
| >sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 342 bits (876), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 143/297 (48%), Positives = 217/297 (73%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
+ K +KLQE VAH++NV+ + +GK + R L TGGDD +VNLW+I KP +MSL G +SP
Sbjct: 6 VTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP 65
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SV ++ E L++AG+ +G I++WDLE +K++RTL GHK+N +++FHP+GEF ASG
Sbjct: 66 VESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQ 125
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTN+K+WDIR+KGC+ Y+GH++ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +F
Sbjct: 126 DTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEF 185
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
H G + ++FHP E+LLA+GS+DRT++FWDLE F+++ E V ++ F+PDG
Sbjct: 186 PGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCC 245
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADV 297
L+SG D+L+VY WEP C D V + W + DL I + +L+G +F +++V +V D+
Sbjct: 246 LYSGCQDSLRVYGWEPERCFDVVLVNWGKVADLAICNDQLIGVAFSQSNVSSYVVDL 302
|
Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth. Mus musculus (taxid: 10090) |
| >sp|Q7ZUV2|KTNB1_DANRE Katanin p80 WD40 repeat-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 335 bits (859), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 140/299 (46%), Positives = 214/299 (71%)
Query: 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVA 65
+KLQE VAHS+NV+ + +GK + R L TGG+D +VN+WA+ KP +MSL G +S V +
Sbjct: 11 WKLQEIVAHSSNVSSLVLGKSSGRLLATGGEDCRVNIWAVSKPNCIMSLTGHTSAVGCIQ 70
Query: 66 FDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLK 125
F+S+E V+AG+ +G ++LWDLE +K++RTL GHK++ ++++FHP GE+ ASG +D+N+K
Sbjct: 71 FNSSEERVVAGSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIK 130
Query: 126 IWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG 185
+WD+R+KGC+ YKGHT+ + + F+PDG+W+ S D+ VK+WDL AGK++ +F H
Sbjct: 131 LWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFTSHTS 190
Query: 186 HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF 245
+ + FHP E+LLA+GSADRTVK WDLE F +IGS+ E V ++ F+PDG L+SG
Sbjct: 191 AVNVVQFHPNEYLLASGSADRTVKLWDLEKFNMIGSSEGETGVVRSVLFNPDGSCLYSGS 250
Query: 246 DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYG 304
++ L+VY WEP C D V +GW + DL I++ +++ S+ +V +V D++ V+ G
Sbjct: 251 ENTLRVYGWEPDRCFDVVHVGWGKVSDLAISNNQMIAVSYSHTNVSWYVVDLNRVKKSG 309
|
Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Danio rerio (taxid: 7955) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 152/290 (52%), Gaps = 6/290 (2%)
Query: 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVA 65
Y LQ H+ VN ++ L +G DQ V LW I L L G +S V+SV
Sbjct: 1152 YTLQ---GHTNWVNAVAFSPDGAT-LASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVV 1207
Query: 66 FDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLK 125
F+ + +G+S ++LW++ SK + T GH S +V F+P G ASG D ++
Sbjct: 1208 FNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVR 1267
Query: 126 IWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG 185
+WDI C+HT++GHT +N++ F PDG + SG D V++W++++ K LH F+ H
Sbjct: 1268 LWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTS 1327
Query: 186 HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF 245
+ S+ F P +LA+GS D+TV+ W + + E + + V ++ F PDG L SG
Sbjct: 1328 WVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGS 1387
Query: 246 -DDNLKVYSWEPVICHDSVDMGWSTLGDLCIN-DGKLLGCSFYRNSVGIW 293
D ++++S C ++ + +G + + DG LL +V +W
Sbjct: 1388 GDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLW 1437
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 140/269 (52%), Gaps = 6/269 (2%)
Query: 29 RFLITGGDDQKVNLWAIGKPTALMSLC-GLSSPVDSVAFD-SAEVLVLAGASTGVIKLWD 86
+ L T D V +W + K L+ +C G S+ V V F E+L GA V KLW
Sbjct: 655 QLLATCDTDCHVRVWEV-KSGKLLLICRGHSNWVRFVVFSPDGEILASCGADENV-KLWS 712
Query: 87 LEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGIN 146
+ + ++TLTGH+ +V FHP GE AS D +K+WDI+ C+ T GHT +
Sbjct: 713 VRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVR 772
Query: 147 TIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADR 206
+ F+PDG + S D+ +K+WD++ GK L K H G +RS+ F LA+GS DR
Sbjct: 773 CVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDR 832
Query: 207 TVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD-NLKVYSWEPVICHDSVDM 265
T+K W+ T E + + V++I + PD + L SG D +K++ + IC ++
Sbjct: 833 TIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHG 892
Query: 266 GWSTLGDLCIN-DGKLLGCSFYRNSVGIW 293
+ + + + DG+ L C SV +W
Sbjct: 893 HTNEVCSVAFSPDGQTLACVSLDQSVRLW 921
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1072 | ||||||
| 357446405 | 1131 | Katanin p80 WD40-containing subunit B1 [ | 0.970 | 0.919 | 0.500 | 0.0 | |
| 334183464 | 1181 | transducin/WD-40 repeat-containing prote | 0.966 | 0.877 | 0.462 | 0.0 | |
| 334183466 | 1179 | transducin/WD-40 repeat-containing prote | 0.964 | 0.877 | 0.460 | 0.0 | |
| 255560798 | 936 | katanin P80 subunit, putative [Ricinus c | 0.692 | 0.792 | 0.560 | 0.0 | |
| 356549389 | 824 | PREDICTED: katanin p80 WD40 repeat-conta | 0.552 | 0.718 | 0.66 | 0.0 | |
| 359497299 | 545 | PREDICTED: katanin p80 WD40 repeat-conta | 0.497 | 0.977 | 0.695 | 0.0 | |
| 356555068 | 825 | PREDICTED: katanin p80 WD40 repeat-conta | 0.569 | 0.740 | 0.643 | 0.0 | |
| 296088927 | 506 | unnamed protein product [Vitis vinifera] | 0.472 | 1.0 | 0.691 | 0.0 | |
| 449457803 | 922 | PREDICTED: katanin p80 WD40 repeat-conta | 0.629 | 0.732 | 0.581 | 0.0 | |
| 449488504 | 906 | PREDICTED: katanin p80 WD40 repeat-conta | 0.527 | 0.623 | 0.642 | 0.0 |
| >gi|357446405|ref|XP_003593480.1| Katanin p80 WD40-containing subunit B1 [Medicago truncatula] gi|355482528|gb|AES63731.1| Katanin p80 WD40-containing subunit B1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 989 bits (2558), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 582/1163 (50%), Positives = 734/1163 (63%), Gaps = 123/1163 (10%)
Query: 1 MAKRGYKL--------------------QEFVAHSANVNCISIGKKACRFLITGGDDQKV 40
MAKRGYK+ +EFVAHS+NVNC++IGKKACR +TGGDD KV
Sbjct: 1 MAKRGYKIRILFYFLINVLCLMKFQLTSEEFVAHSSNVNCLNIGKKACRLFVTGGDDHKV 60
Query: 41 NLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHK 100
NLW IGKPT+L SL G +SPV+SV FDS EVLVLAG+++GVI+LWDLEESKMVRT+ GH+
Sbjct: 61 NLWTIGKPTSLSSLSGHTSPVESVTFDSGEVLVLAGSTSGVIRLWDLEESKMVRTVAGHR 120
Query: 101 SNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSG 160
SNCT+VEFHPFGEFFASG MDTNLKIWD RKKGCIHTYKGH++GI+TI+FTPDGRWVVSG
Sbjct: 121 SNCTSVEFHPFGEFFASGSMDTNLKIWDNRKKGCIHTYKGHSQGISTIKFTPDGRWVVSG 180
Query: 161 GFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIG 220
GFDNVVKVWDLTAGKLLHDF FH+GHI S+DFHPLEFLLATGSADRTVKFWDLE+FELIG
Sbjct: 181 GFDNVVKVWDLTAGKLLHDFNFHDGHITSLDFHPLEFLLATGSADRTVKFWDLESFELIG 240
Query: 221 STRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKL 280
S R E TGV ++ FHPDGRTLFSG +D LKV+SWEPVICHD+VDMGW+ LGDLCI+DGKL
Sbjct: 241 SARREATGVRSMAFHPDGRTLFSGHEDGLKVFSWEPVICHDTVDMGWTKLGDLCIHDGKL 300
Query: 281 LGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSG 340
LGCS+YRNSVG+WVAD+S +EPYG G + + I TE K + GS LE V + T+G
Sbjct: 301 LGCSYYRNSVGVWVADISLIEPYGDGL-DLKKDIGTEQKHSLKGS-KLENVEVDVGPTAG 358
Query: 341 FRSTSPDYETKDIKTIYVDSTGGKPVASQKIGPLNSPKVVPPLDSEEISDLQTEKQNPAI 400
FRS SPD E+K+IK IY+DS+GGKPV+ Q+ +S KV +S+EI DL+T KQNPA
Sbjct: 359 FRSISPD-ESKEIKNIYIDSSGGKPVSLQRSASYHSAKVDLAEESKEIYDLETLKQNPAT 417
Query: 401 GVPELSNGQALDKSFIVPSIVPQESPAGKDSSFSAGESITFSRTKPGMLLRPAHVQKPSN 460
V SN Q KS IVP+I P KDS+ E+ITFS+TKPGMLL+PAHV++ S
Sbjct: 418 KVHVKSNEQETRKSIIVPNI-----PDSKDSAKPVKETITFSKTKPGMLLKPAHVRRAST 472
Query: 461 SKYDAERLSTAAESESLNSKKSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEI 520
++D +R S S + S LDSA P ++ S + ++SCE+K IK +T +
Sbjct: 473 GRFDVDRFSD-VNSRTFCDTASKLDSAKFPKFESYVGSQNEVKESCEDKH-PIKNVTDKS 530
Query: 521 ENIFSPQKPPKQEDGDKSRDCSKITNSVKFVNGVAVVPGRTRSLVERFERREKVNSNEDL 580
SP K +S C++ VK+VNGVAVV GRTRSLVERFERRE V NED
Sbjct: 531 NKTVSPYKIFNLAKRVESSTCNEEITPVKYVNGVAVVRGRTRSLVERFERREIVQVNEDE 590
Query: 581 AANVIPQTRLS----RNEDQ-----AADVTPQTTLSSNEDHVANVTS-----QTRLNGNE 626
+P + NEDQ + + + NED + S + ++ NE
Sbjct: 591 INAPLPTINEAGVNIHNEDQTNSYPTSVFERKEIIPCNEDQTSETPSVVFERKEKIPRNE 650
Query: 627 YQAATAP-----QQTRLSSN------IDPVANVTPQTLPSGNEDQAANVTPQT------R 669
Q + +P ++ R+ N P+ + LP +EDQ N +P + +
Sbjct: 651 DQTSESPSTAFERKERIPRNEVQTNAYPPMVFERKEKLPR-DEDQ-TNESPSSVFERKEK 708
Query: 670 PSSNEDQT----------ANVIRQTRPSSNEDQAVIVNPQTRRHSNEDQASNIAPYTRHD 719
+E QT I ++ +N +V+ + R E Q +N P T +
Sbjct: 709 IPRDEGQTNASPSTVFEMKERIPRSEVQTNAPPSVVFERKDRIPRTEVQ-TNAPPSTVFE 767
Query: 720 RNE-----DRATNITPQSKISRNQDQATNITSHMGLNSNENRATNIPSRSRLNSREDQST 774
R E + TN +P + R + + + +N + + + R+ E Q+
Sbjct: 768 RKERIPRDEVQTNASPSTVFERKER-----IPRIEVQTNASSSVVFERKERIPRNEVQA- 821
Query: 775 NTPSQTIVNGAENKATKTPTQMRLKSSENQVTSTP----------PRARLNSSIEGQATN 824
N P T+ E R+ SE Q ++P PR+ + ++ +
Sbjct: 822 NAPPSTVFERKE----------RIPRSEGQTNASPSMVFERKERIPRSEVQTN---APPS 868
Query: 825 IPIRRRFNRNVDQT----TNVTRHRRSIS-NTDQATSTTAHVA-----VKNNDDIATVIT 874
+ + R RNV QT T V+ + IS N QA ++ A V+ + N+D +
Sbjct: 869 LERKERIPRNVVQTNASLTLVSERKERISRNGVQANASLAMVSERKERIPRNEDRNNFPS 928
Query: 875 PHVTALSYERTST---PKGEPQISGRDTPVANEGEAVESLMETHDIFISTLRSRLTKLQV 931
T + + + PK EPQ+S RD+ NE +E LMETHD+ +S LRSRLTKLQV
Sbjct: 929 IPNTPSDIDESPSPNIPKLEPQVSQRDSSSPNEMAIIEGLMETHDVTLSNLRSRLTKLQV 988
Query: 932 VRHFWERNDIKGGINALRKLPDHS--ADVMSVLMEKMEILNLDLFLCLLPMLMGLLDSKM 989
VRHFWERNDIKG I+ALRKLPD S ADV+SVLMEKMEIL LDL LLP+L GLLDSK
Sbjct: 989 VRHFWERNDIKGAISALRKLPDQSVQADVISVLMEKMEILTLDLLASLLPVLTGLLDSKT 1048
Query: 990 ERHASISLEMLLKLVVVFGPMIHSTLSAPPAVGVDLHAEQRRECCNRCFMQLQKIQKILP 1049
ERH +SL+MLLK VFG I +T+SAPP+VGVDLH EQRRECCN CFM+LQK+Q ILP
Sbjct: 1049 ERHVKVSLDMLLKFAAVFGSTITATISAPPSVGVDLHREQRRECCNECFMELQKVQTILP 1108
Query: 1050 ILERRGGLLAKCAHELNLVLQES 1072
+L RRGGLLAK + ELNLVLQ S
Sbjct: 1109 MLIRRGGLLAKSSMELNLVLQRS 1131
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334183464|ref|NP_176316.4| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|332195682|gb|AEE33803.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2319), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/1213 (46%), Positives = 710/1213 (58%), Gaps = 177/1213 (14%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
MAKRGYKLQEF+AHSANVNC+SIGKK R ITGGDD KVNLWAIGKPT+LMSLCG +S
Sbjct: 1 MAKRGYKLQEFLAHSANVNCLSIGKKTSRLFITGGDDYKVNLWAIGKPTSLMSLCGHTSA 60
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
VDSVAFDSAEVLVLAGAS+GVIKLWD+EE+KMVR TGH+SNC+AVEFHPFGEF ASG
Sbjct: 61 VDSVAFDSAEVLVLAGASSGVIKLWDVEEAKMVRAFTGHRSNCSAVEFHPFGEFLASGSS 120
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
D NLKIWDIRKKGCI TYKGH+RGI+TIRFTPDGRWVVSGG DNVVKVWDLTAGKLLH+F
Sbjct: 121 DANLKIWDIRKKGCIQTYKGHSRGISTIRFTPDGRWVVSGGLDNVVKVWDLTAGKLLHEF 180
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
KFHEG IRS+DFHPLEFLLATGSADRTVKFWDLETFELIGSTRPE TGV +I FHPDGRT
Sbjct: 181 KFHEGPIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEATGVRSIKFHPDGRT 240
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
LF G DD+LKVYSWEPV+CHD VDMGWSTLGDLCI++GKLLGCS+Y+NSVGIWV+D+S +
Sbjct: 241 LFCGLDDSLKVYSWEPVVCHDGVDMGWSTLGDLCISEGKLLGCSYYQNSVGIWVSDISQI 300
Query: 301 EPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDS 360
EPYG+G+ D+ C E + S +++ R RS+SPDYETK+IK IY+DS
Sbjct: 301 EPYGIGSA--DKKECVEKILSALDDQSFDRIKSTPR-----RSSSPDYETKEIKNIYIDS 353
Query: 361 TGGKPVASQKIGPLNSPKV---------------VPPLDSEEISDL-------------- 391
TGG + K G L++P V P DS+ D
Sbjct: 354 TGGNSAVAHKSGSLSTPATSTGQAGDNKSLVVHSVVPRDSDIGKDSSDSGKESITFSKTK 413
Query: 392 ------------------QTEKQNPAIGVPE---LSNGQALDKSFIVPSIVPQESPAGKD 430
+T+KQ+ A+G + L + LD S + +P D
Sbjct: 414 PGMLLRPAYVRKTPTKFDETKKQSVAVGYLKKSGLDGEKKLDTETAFDSEMSGRNPYDAD 473
Query: 431 SSFSAGESITFSRT---------KPGMLLRPAHVQKPSNSKYDAERLSTAAESESLNSKK 481
S + F + MLL+P VQ+ ++KY+ R +T+ +S +L+SKK
Sbjct: 474 DSIIKSITNKFEQALLPESPTDEAKCMLLKPPRVQRSPSTKYNEARWATSTDSGALDSKK 533
Query: 482 SDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQKPPKQEDGDKSRDC 541
+ L+S+ D ++ T G+ CEE D K+I+ E + SP+K + +S
Sbjct: 534 NGLESSRDMDLPTGLRDDRGS-NPCEE-DIENKSISSRSERVLSPEKAGDELKSLESPGG 591
Query: 542 SKITNSVKFVNGVAVVPGRTRSLVERFERREKVNSNEDLAANV-IPQTRLSRNED----- 595
SK + SVK V GV VV GRTRSLVERFER EK+ +ED AA+ + + S E+
Sbjct: 592 SKESKSVKVVRGVKVVSGRTRSLVERFERGEKITHSEDKAASATVVHSSNSVEEEPLTAS 651
Query: 596 -QAADVTPQTTLSSNEDHVANVTSQTRLNGNEYQAATAPQQTRLSSNIDPVANVTPQTLP 654
Q + P + D N T+ P + + PV V P L
Sbjct: 652 VQTVSMMPTQVMPVKLDQATNSTT-----------VDVPVLSTRRTKSTPV-RVMPVVL- 698
Query: 655 SGNEDQAANVTP---QTRP--SSNEDQTANVI-----RQTRPSSNEDQAVIVNPQTRRHS 704
G + A TP TRP +S + T++V RQTR S +I+N T+ S
Sbjct: 699 -GRDTSMATDTPPVTSTRPDRTSATNLTSDVSGVTSKRQTRTSPAPVMPMILNQTTKMKS 757
Query: 705 NEDQASNIAP--YTRHDRNED-------RATNITP----------QSKISRNQ------- 738
+E ++ P + D D R T +P ++KI ++
Sbjct: 758 DEPSITSTWPDRTSATDLTSDVSGVISSRQTRTSPAPVMPMKLNQKTKIKSDEPPITSTR 817
Query: 739 ---DQATNITSHMGLNSNENRATNIPS---------RSRLNSREDQS---TNTPSQT--- 780
ATN+TS ++ +A P+ R N + D+ + P +T
Sbjct: 818 PDRPSATNLTSDESPVTSTRQAKTSPAPVTPVILNQRQTTNMKSDEPPVISTRPLRTSSA 877
Query: 781 -----IVNGAENKATKTPTQ--------------MRLKSSENQVTSTPPRARLNSSIEGQ 821
I+N A + P M+L ++N + PP A S+
Sbjct: 878 RVMPVILNQASTTYDERPLSSSRSARTSPARIMPMKLNQADNMPSYEPPVALTRSARNSP 937
Query: 822 ATNIPIRRRFNRNVDQTTNVTRHRRSISNTDQATSTTAHVAVKNNDDIATVITPHVTALS 881
A IP++ ++Q TNVT I + Q S T +A D T +T T +
Sbjct: 938 ARVIPVK------LNQATNVTADASHI-RSRQRFSPTQTLATPAVFDQVTDMTLDETTKT 990
Query: 882 YERTS--TPKGEPQISGRDTPVANEGEAVESLMETHDIFISTLRSRLTKLQVVRHFWERN 939
+ + T K EPQISGR+ ++G+ E LM TH ++TL+SRLTKLQ+VRHFWER+
Sbjct: 991 QQSSDILTQKEEPQISGRE----DDGDIWEILMRTHSEVLNTLQSRLTKLQIVRHFWERS 1046
Query: 940 DIKGGINALRKLPDHS--ADVMSVLMEKMEILNLDLFLCLLPMLMGLLDSKMERHASISL 997
DIKG I ALRKL DHS ADV+++L +K EIL LDLF L P+L GLL SK ER ++SL
Sbjct: 1047 DIKGAIAALRKLSDHSVQADVINILTDKTEILTLDLFSQLAPVLTGLLGSKTERPVNVSL 1106
Query: 998 EMLLKLVVVFGPMIHSTLSAPPAVGVDLHAEQRRECCNRCFMQLQKIQKILPILERRGGL 1057
EMLLKLV VFG +I ST+SA VGVDLHAE+R + C C +LQK+QKILP+L RRGGL
Sbjct: 1107 EMLLKLVAVFGTVIQSTVSARRVVGVDLHAEERLQICQSCSAELQKVQKILPLLTRRGGL 1166
Query: 1058 LAKCAHELNLVLQ 1070
+A+ A ELNLVLQ
Sbjct: 1167 IARKAQELNLVLQ 1179
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334183466|ref|NP_001185277.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|332195683|gb|AEE33804.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 887 bits (2291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/1213 (46%), Positives = 707/1213 (58%), Gaps = 179/1213 (14%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
MAKRGYKLQEF+AHSANVNC+SIGKK R ITGGDD KVNLWAIGKPT+LMSLCG +S
Sbjct: 1 MAKRGYKLQEFLAHSANVNCLSIGKKTSRLFITGGDDYKVNLWAIGKPTSLMSLCGHTSA 60
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
VDSVAFDSAEVLVLAGAS+GVIKLWD+EE+KMVR TGH+SNC+AVEFHPFGEF ASG
Sbjct: 61 VDSVAFDSAEVLVLAGASSGVIKLWDVEEAKMVRAFTGHRSNCSAVEFHPFGEFLASGSS 120
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
D NLKIWDIRKKGCI TYKGH+RGI+TIRFTPDGRWVVSGG DNVVKVWDLTAGKLLH+F
Sbjct: 121 DANLKIWDIRKKGCIQTYKGHSRGISTIRFTPDGRWVVSGGLDNVVKVWDLTAGKLLHEF 180
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
KFHEG IRS+DFHPLEFLLATGSADRTVKFWDLETFELIGSTRPE TGV +I FHPDGRT
Sbjct: 181 KFHEGPIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEATGVRSIKFHPDGRT 240
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
LF G DD+LKVYSWEPV+CHD VDMGWSTLGDLCI++GKLLGCS+Y+NSVGIWV+D+S +
Sbjct: 241 LFCGLDDSLKVYSWEPVVCHDGVDMGWSTLGDLCISEGKLLGCSYYQNSVGIWVSDISQI 300
Query: 301 EPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDS 360
EPYG+G+ D+ C E + S +++ R RS+SPDYETK+IK IY+D
Sbjct: 301 EPYGIGSA--DKKECVEKILSALDDQSFDRIKSTPR-----RSSSPDYETKEIKNIYIDC 353
Query: 361 TGGKPVASQKIGPLNSPKV---------------VPPLDSEEISDL-------------- 391
G + K G L++P V P DS+ D
Sbjct: 354 --GNSAVAHKSGSLSTPATSTGQAGDNKSLVVHSVVPRDSDIGKDSSDSGKESITFSKTK 411
Query: 392 ------------------QTEKQNPAIGVPE---LSNGQALDKSFIVPSIVPQESPAGKD 430
+T+KQ+ A+G + L + LD S + +P D
Sbjct: 412 PGMLLRPAYVRKTPTKFDETKKQSVAVGYLKKSGLDGEKKLDTETAFDSEMSGRNPYDAD 471
Query: 431 SSFSAGESITFSRT---------KPGMLLRPAHVQKPSNSKYDAERLSTAAESESLNSKK 481
S + F + MLL+P VQ+ ++KY+ R +T+ +S +L+SKK
Sbjct: 472 DSIIKSITNKFEQALLPESPTDEAKCMLLKPPRVQRSPSTKYNEARWATSTDSGALDSKK 531
Query: 482 SDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQKPPKQEDGDKSRDC 541
+ L+S+ D ++ T G+ CEE D K+I+ E + SP+K + +S
Sbjct: 532 NGLESSRDMDLPTGLRDDRGS-NPCEE-DIENKSISSRSERVLSPEKAGDELKSLESPGG 589
Query: 542 SKITNSVKFVNGVAVVPGRTRSLVERFERREKVNSNEDLAANV-IPQTRLSRNED----- 595
SK + SVK V GV VV GRTRSLVERFER EK+ +ED AA+ + + S E+
Sbjct: 590 SKESKSVKVVRGVKVVSGRTRSLVERFERGEKITHSEDKAASATVVHSSNSVEEEPLTAS 649
Query: 596 -QAADVTPQTTLSSNEDHVANVTSQTRLNGNEYQAATAPQQTRLSSNIDPVANVTPQTLP 654
Q + P + D N T+ P + + PV V P L
Sbjct: 650 VQTVSMMPTQVMPVKLDQATNSTT-----------VDVPVLSTRRTKSTPV-RVMPVVL- 696
Query: 655 SGNEDQAANVTP---QTRP--SSNEDQTANVI-----RQTRPSSNEDQAVIVNPQTRRHS 704
G + A TP TRP +S + T++V RQTR S +I+N T+ S
Sbjct: 697 -GRDTSMATDTPPVTSTRPDRTSATNLTSDVSGVTSKRQTRTSPAPVMPMILNQTTKMKS 755
Query: 705 NEDQASNIAP--YTRHDRNED-------RATNITP----------QSKISRNQ------- 738
+E ++ P + D D R T +P ++KI ++
Sbjct: 756 DEPSITSTWPDRTSATDLTSDVSGVISSRQTRTSPAPVMPMKLNQKTKIKSDEPPITSTR 815
Query: 739 ---DQATNITSHMGLNSNENRATNIPS---------RSRLNSREDQS---TNTPSQT--- 780
ATN+TS ++ +A P+ R N + D+ + P +T
Sbjct: 816 PDRPSATNLTSDESPVTSTRQAKTSPAPVTPVILNQRQTTNMKSDEPPVISTRPLRTSSA 875
Query: 781 -----IVNGAENKATKTPTQ--------------MRLKSSENQVTSTPPRARLNSSIEGQ 821
I+N A + P M+L ++N + PP A S+
Sbjct: 876 RVMPVILNQASTTYDERPLSSSRSARTSPARIMPMKLNQADNMPSYEPPVALTRSARNSP 935
Query: 822 ATNIPIRRRFNRNVDQTTNVTRHRRSISNTDQATSTTAHVAVKNNDDIATVITPHVTALS 881
A IP++ ++Q TNVT I + Q S T +A D T +T T +
Sbjct: 936 ARVIPVK------LNQATNVTADASHI-RSRQRFSPTQTLATPAVFDQVTDMTLDETTKT 988
Query: 882 YERTS--TPKGEPQISGRDTPVANEGEAVESLMETHDIFISTLRSRLTKLQVVRHFWERN 939
+ + T K EPQISGR+ ++G+ E LM TH ++TL+SRLTKLQ+VRHFWER+
Sbjct: 989 QQSSDILTQKEEPQISGRE----DDGDIWEILMRTHSEVLNTLQSRLTKLQIVRHFWERS 1044
Query: 940 DIKGGINALRKLPDHS--ADVMSVLMEKMEILNLDLFLCLLPMLMGLLDSKMERHASISL 997
DIKG I ALRKL DHS ADV+++L +K EIL LDLF L P+L GLL SK ER ++SL
Sbjct: 1045 DIKGAIAALRKLSDHSVQADVINILTDKTEILTLDLFSQLAPVLTGLLGSKTERPVNVSL 1104
Query: 998 EMLLKLVVVFGPMIHSTLSAPPAVGVDLHAEQRRECCNRCFMQLQKIQKILPILERRGGL 1057
EMLLKLV VFG +I ST+SA VGVDLHAE+R + C C +LQK+QKILP+L RRGGL
Sbjct: 1105 EMLLKLVAVFGTVIQSTVSARRVVGVDLHAEERLQICQSCSAELQKVQKILPLLTRRGGL 1164
Query: 1058 LAKCAHELNLVLQ 1070
+A+ A ELNLVLQ
Sbjct: 1165 IARKAQELNLVLQ 1177
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255560798|ref|XP_002521412.1| katanin P80 subunit, putative [Ricinus communis] gi|223539311|gb|EEF40902.1| katanin P80 subunit, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 857 bits (2213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/798 (56%), Positives = 558/798 (69%), Gaps = 56/798 (7%)
Query: 1 MAKRGYKL-----------QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT 49
MAKRGYKL +EFVAHS+NVNC++IGKK CR ITGGDD KVNLWAIGKPT
Sbjct: 1 MAKRGYKLRILFSLTEMKLEEFVAHSSNVNCLNIGKKTCRMYITGGDDYKVNLWAIGKPT 60
Query: 50 ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFH 109
+LMSLCG +SPV+S+AFD+AEVLVL GASTGVIKLWDLEE+KMVRTLTGH+SNCTA+EFH
Sbjct: 61 SLMSLCGHTSPVESLAFDTAEVLVLGGASTGVIKLWDLEEAKMVRTLTGHRSNCTAIEFH 120
Query: 110 PFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW 169
PFGEFFASG DTNLK+WDIRKKG +HTYKGHTRGI+TIRFTPDGRWVVSGG DNVVKVW
Sbjct: 121 PFGEFFASGSADTNLKLWDIRKKGTLHTYKGHTRGISTIRFTPDGRWVVSGGLDNVVKVW 180
Query: 170 DLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGV 229
DLTAGKLLHDFKFHEGHIRS+DFHPLEFLLATGSADRTVKFWDLETFELIGS RPE TGV
Sbjct: 181 DLTAGKLLHDFKFHEGHIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSARPEATGV 240
Query: 230 HAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNS 289
AI+FHPDGRTLF G DD+LKVYSWEPVICHDSVD+GWSTLGDLCI++ KLLGCS+YRNS
Sbjct: 241 RAISFHPDGRTLFCGLDDSLKVYSWEPVICHDSVDIGWSTLGDLCIHEEKLLGCSYYRNS 300
Query: 290 VGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYE 349
V +WVADVS +EPYGVG P++S C E KF+ P S S +KV RSTS RS SPDYE
Sbjct: 301 VAVWVADVSLIEPYGVGFI-PEESDCIEKKFSIPKSDSPDKVRSGMRSTSHLRSLSPDYE 359
Query: 350 TKDIKTIYVDSTGGKPVASQKIGPLNSPKVVPPLDSEEISDLQTEKQNPAIGVPELSNGQ 409
+K+IK IYVDS GKPV+SQK+G L SPK V PLDS+E+S+ ++K+ P G ++G+
Sbjct: 360 SKEIKNIYVDSADGKPVSSQKVGSLTSPKRVLPLDSKEMSNPPSDKKIPVTGGNAKADGE 419
Query: 410 ALDKSFIVPSIVPQESPAGKDSSFSAGESITFSRTKPGMLLRPAHVQKPSNSKYDAERLS 469
A +KSF+VP++VP+++P K+SS S E++TFSRT+PGMLLRPAH+Q+ SNSK D E+LS
Sbjct: 420 AFNKSFVVPTVVPRDNPIEKNSSNSGRETVTFSRTRPGMLLRPAHMQRLSNSKNDVEKLS 479
Query: 470 TAAESESLNSKKSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQKP 529
A ESE+ ++ S+ SA+D +++ V +G +KS EEK K + + E SP+KP
Sbjct: 480 VALESETFSNMPSEKVSAMDLKLQSLNVLEEGVQKSYEEKSSDFKNVAEKFEKDLSPEKP 539
Query: 530 PKQEDGDKSRDCSKITNSVKFVNGVAVVPGRTRSLVERFERREKVNSNEDLAANVIPQTR 589
QE D+S + ++ SVK +NGVAVV GRTRSLVERFERREK +
Sbjct: 540 SSQEHCDESVNNNRAIPSVKIINGVAVVAGRTRSLVERFERREKFS-------------- 585
Query: 590 LSRNEDQAADVTPQTTLSSNEDHVANVTSQTRLNGNEYQAATAPQQTRLSSNIDPVA-NV 648
NEDQ+ + QT A +T+ T + P+ R P+A ++
Sbjct: 586 ---NEDQSTSMESQT---------AGLTNSTPTMSTNVTPLSLPEAGRKP----PIAISM 629
Query: 649 TPQTLPSGNE--DQAANVTPQTRPSSNEDQTANVIRQTR-----PSSNEDQAVIVNPQTR 701
TP+ +P + A N++P P + T + R P + + +V P+T
Sbjct: 630 TPRIVPETKTKPEIATNMSPHVFPEMDRTPTVATVVTPRVMDRIPVTATNMIPLVIPETD 689
Query: 702 RHSNEDQASNIAPYTRHDRNED--RATNITPQ--SKISRNQDQATNITSHMGLNSNENRA 757
R A+N+ +RN T++TP+ S+ R+ ATN+T H+ +
Sbjct: 690 R--TPIAATNMTRRVISERNRSPIATTDMTPEAISERGRSPSTATNMTCHVVHEMDRRTL 747
Query: 758 TNIPSRSRLNSREDQSTN 775
+ +++ R+ S+N
Sbjct: 748 PAMKEEPQISGRDSNSSN 765
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549389|ref|XP_003543076.1| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/600 (66%), Positives = 468/600 (78%), Gaps = 8/600 (1%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
MAKRGYK+QEFVAHSA+VNC++IGKKACR ITGGDD KVNLW IGKPT + SL G +SP
Sbjct: 1 MAKRGYKIQEFVAHSASVNCLNIGKKACRLFITGGDDHKVNLWTIGKPTPITSLSGHTSP 60
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SVAFDS EVLVL GASTGVIKLWDLEE+KMVRT+ GH+SNCTAVEFHPFGEFFASG M
Sbjct: 61 VESVAFDSGEVLVLGGASTGVIKLWDLEEAKMVRTVAGHRSNCTAVEFHPFGEFFASGSM 120
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTNLKIWDIRKKGCIHTYKGH++GI+ I+FTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF
Sbjct: 121 DTNLKIWDIRKKGCIHTYKGHSQGISIIKFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS RPE TGV +I FHPDGR
Sbjct: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSARPEATGVRSIAFHPDGRA 240
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
LF+G +D LKVYSWEPVICHD++DMGW+TLGDLCI+DGKLLGCSFYRNSVG+WVAD+S +
Sbjct: 241 LFTGHEDGLKVYSWEPVICHDTIDMGWTTLGDLCIHDGKLLGCSFYRNSVGVWVADISLI 300
Query: 301 EPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDS 360
EPYG G +P ++ TE K GS LEKV + TSG RS SPD E+K+IK IY+DS
Sbjct: 301 EPYGTGL-DPKKNESTEQKLGLQGS-KLEKVEVNVGPTSGSRSMSPD-ESKEIKNIYIDS 357
Query: 361 TGGKPVASQKIGPLNSPKVVPPLDSEEISDLQTEKQNPAIGVPELSNGQALDKSFIVPSI 420
+GGKPV Q+ G L+S KV P + +EI +L T KQ+PA G SN QA+ KSFI P+I
Sbjct: 358 SGGKPVTLQRSGSLSSTKVDLPEEFKEICNLGTMKQSPATGARVKSNEQAIRKSFIAPNI 417
Query: 421 VPQESPAGKDSSFSAGESITFSRTKPGMLLRPAHVQKPSNSKYDAERLSTAAESESLNSK 480
VP+++P GK S+ S E+ITFS+TKPGMLLRPAHV++ S ++D +R S S +
Sbjct: 418 VPRDTPDGKVSAKSEKETITFSKTKPGMLLRPAHVRRASTGRFDVDRFSEDVNSGTFCDT 477
Query: 481 KSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQKPPKQEDGDKSRD 540
LDS +P + S + ++SCE+K IK++T + + SP + +Q D+S
Sbjct: 478 AIKLDSTKEPKFQPNLGSQNEVKESCEDKH-PIKSVTDKFDKTLSPSRFSEQTKCDESSL 536
Query: 541 CSKITNSVKFVNGVAVVPGRTRSLVERFERREKVNSNEDLAANVIPQTRLSR----NEDQ 596
C + + VK+VNGVAVV GRTRSLVERFERR+K+ NED +P +R NEDQ
Sbjct: 537 CKEEISPVKYVNGVAVVRGRTRSLVERFERRDKIQINEDQTTVFLPTINETREKVHNEDQ 596
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359497299|ref|XP_002266048.2| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/545 (69%), Positives = 446/545 (81%), Gaps = 12/545 (2%)
Query: 1 MAKRGYKL-----------QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT 49
MAKRGYKL +EFVAH+ NVNC++IGKKACR LI+GGDD KVNLWAIGKPT
Sbjct: 1 MAKRGYKLRILFCLTKLNIEEFVAHTTNVNCLNIGKKACRLLISGGDDHKVNLWAIGKPT 60
Query: 50 ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFH 109
+LMSLCG +SPV+SV FDSAEVLV AGASTGVIKLWDLEE+KMVRTLTGH+SNCTAVEFH
Sbjct: 61 SLMSLCGHTSPVESVTFDSAEVLVAAGASTGVIKLWDLEEAKMVRTLTGHRSNCTAVEFH 120
Query: 110 PFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW 169
PFGEFFASG +DTNLK+WDIRKKGCIHTYKGHTRGI+TIRFTPDGRWVVSGGFDNVVKVW
Sbjct: 121 PFGEFFASGSLDTNLKVWDIRKKGCIHTYKGHTRGISTIRFTPDGRWVVSGGFDNVVKVW 180
Query: 170 DLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGV 229
DLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS RPE TGV
Sbjct: 181 DLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSARPEATGV 240
Query: 230 HAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNS 289
+ITFHPDGRTLF G DD+LKVYSWEPV+CHD+VDMGWS LGD+CI++GKLLGCS+YRNS
Sbjct: 241 RSITFHPDGRTLFCGLDDSLKVYSWEPVVCHDAVDMGWSILGDICIHEGKLLGCSYYRNS 300
Query: 290 VGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYE 349
VG+WVAD+S +EPYG G C E KF+ SHS+EKVG RSTSGFRS SPDY+
Sbjct: 301 VGVWVADISKIEPYGSGLLSKKNG-CVERKFDLQESHSVEKVGSSVRSTSGFRSMSPDYD 359
Query: 350 TKDIKTIYVDSTGGKPVASQKIGPLNSPKVVPPLDSEEISDLQTEKQNPAIGVPELSNGQ 409
TK+IK IYVDS+GG VASQK+ N+PKV+ P DS+EI++L T+K +P +G+ + G+
Sbjct: 360 TKEIKNIYVDSSGGNSVASQKVRSFNTPKVLFPSDSKEITNLPTQKHSPGVGLHAKTQGR 419
Query: 410 ALDKSFIVPSIVPQESPAGKDSSFSAGESITFSRTKPGMLLRPAHVQKPSNSKYDAERLS 469
A+ +SF+VPSIV +++ GKD + S ESIT +R GM L+ +H+++PSNSKY+AERL
Sbjct: 420 AITRSFVVPSIVTRDNSDGKDLANSRRESITPARANTGMSLKTSHIRRPSNSKYEAERLL 479
Query: 470 TAAESESLNSKKSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQKP 529
A ES S +S +DLDSA+ N +R V D A +SCEEK+ +I ++ + E + SPQ
Sbjct: 480 MAVESGSFDSMPNDLDSAMKQNFHSRLVVDDEASESCEEKNSNISSVAEKFEKVLSPQPS 539
Query: 530 PKQED 534
QE+
Sbjct: 540 SNQEN 544
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555068|ref|XP_003545861.1| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 800 bits (2066), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/620 (64%), Positives = 471/620 (75%), Gaps = 9/620 (1%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
MAKRGYK+QEFVAHSA+VNC++IGKKACR ITGGDD KVNLW IGKPT L SL G +SP
Sbjct: 1 MAKRGYKIQEFVAHSASVNCLNIGKKACRLFITGGDDHKVNLWTIGKPTFLTSLSGHTSP 60
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SVAFDS EVLVL GASTGVIKLWDLEE+KMVRT+ GH+SNCTAVEFHPFGEFFASG M
Sbjct: 61 VESVAFDSGEVLVLGGASTGVIKLWDLEEAKMVRTVAGHRSNCTAVEFHPFGEFFASGSM 120
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTNLKIWDIRKKGCIHTYKGH++GI+TI+FTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF
Sbjct: 121 DTNLKIWDIRKKGCIHTYKGHSQGISTIKFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS R E TGV +I FHPDGRT
Sbjct: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSARREATGVRSIAFHPDGRT 240
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
LF+G +D LKVYSWEPVICHD+VDMGW+TLGDLCI+D KLLGCSFYRNSVG+WVAD+S +
Sbjct: 241 LFTGHEDGLKVYSWEPVICHDTVDMGWTTLGDLCIHDEKLLGCSFYRNSVGVWVADISLI 300
Query: 301 EPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDS 360
EPYG G +P ++ TE K GS LEKV + TSGFRS SPD E+K+IK IY+DS
Sbjct: 301 EPYGAGL-DPKKNEGTEQKLGLQGS-KLEKVEVNVGPTSGFRSMSPD-ESKEIKNIYIDS 357
Query: 361 TGGKPVASQKIGPLNSPKVVPPLDSEEISDLQTEKQNPAIGVPELSNGQALDKSFIVPSI 420
+GGKPV Q+ G L+S KV P + +EI +L T KQ+PA G SN QA+ KSFI P+I
Sbjct: 358 SGGKPVTLQRSGSLSSTKVDLPEEFKEICNLGTMKQSPATGARVKSNEQAIRKSFIAPNI 417
Query: 421 VPQESPAGKDSSFSAGESITFSRTKPGMLLRPAHVQKPSNSKYDAERLSTAAESESLNSK 480
VP+++P GK S+ S E+I+FS+TKPGMLLRPAHV++ S ++D +R S S +
Sbjct: 418 VPRDTPDGKVSAKSEKETISFSKTKPGMLLRPAHVRRASTGRFDVDRFSEDVNSRTFCDT 477
Query: 481 KSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQKPPKQEDGDKSRD 540
+P+ + + ++SCE+K IK +T + + SP + +Q D+S
Sbjct: 478 AIKSGITKEPSFQLNLGFQNEVKESCEDKH-PIKNVTDKFDKTLSPSRFSEQTKRDESSP 536
Query: 541 CSKITNSVKFVNGVAVVPGRTRSLVERFERREKVNSNEDLAANVIPQTRLSR----NEDQ 596
C + + VK+VNGVAVV GRTRSLVERFERREK+ +ED +P +R NEDQ
Sbjct: 537 CKEEISPVKYVNGVAVVRGRTRSLVERFERREKIQIDEDQTNVFLPTINETREKVHNEDQ 596
Query: 597 -AADVTPQTTLSSNEDHVAN 615
A TP E + N
Sbjct: 597 IKASPTPTAVFERRERNPLN 616
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088927|emb|CBI38493.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/534 (69%), Positives = 427/534 (79%), Gaps = 28/534 (5%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
MAKRGYKLQEFVAH+ NVNC++IGKKACR LI+GGDD KVNLWAIGKPT+LMSLCG +SP
Sbjct: 1 MAKRGYKLQEFVAHTTNVNCLNIGKKACRLLISGGDDHKVNLWAIGKPTSLMSLCGHTSP 60
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SV FDSAEVLV AGASTGVIKLWDLEE+KMVRTLTGH+SNCTAVEFHPFGEFFASG +
Sbjct: 61 VESVTFDSAEVLVAAGASTGVIKLWDLEEAKMVRTLTGHRSNCTAVEFHPFGEFFASGSL 120
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTNLK+WDIRKKGCIHTYKGHTRGI+TIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF
Sbjct: 121 DTNLKVWDIRKKGCIHTYKGHTRGISTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS RPE TGV +ITFHPDGRT
Sbjct: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSARPEATGVRSITFHPDGRT 240
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
LF G DD+LKVYSWEPV+CHD+VDMGWS LGD+CI++GKLLGCS+YRNSVG+WVAD+S +
Sbjct: 241 LFCGLDDSLKVYSWEPVVCHDAVDMGWSILGDICIHEGKLLGCSYYRNSVGVWVADISKI 300
Query: 301 EPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDS 360
EPYG G C E KF+ SHS+EKVG RSTSGFRS SPDY+TK+IK IYVDS
Sbjct: 301 EPYGSGLLSKKNG-CVERKFDLQESHSVEKVGSSVRSTSGFRSMSPDYDTKEIKNIYVDS 359
Query: 361 TGGKPVASQKIGPLNSPKVVPPLDSEEISDLQTEKQNPAIGVPELSNGQALDKSFIVPSI 420
+GG VASQK+ N+PK + G+A+ +SF+VPSI
Sbjct: 360 SGGNSVASQKVRSFNTPK---------------------------TQGRAITRSFVVPSI 392
Query: 421 VPQESPAGKDSSFSAGESITFSRTKPGMLLRPAHVQKPSNSKYDAERLSTAAESESLNSK 480
V +++ GKD + S ESIT +R GM L+ +H+++PSNSKY+AERL A ES S +S
Sbjct: 393 VTRDNSDGKDLANSRRESITPARANTGMSLKTSHIRRPSNSKYEAERLLMAVESGSFDSM 452
Query: 481 KSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQKPPKQED 534
+DLDSA+ N +R V D A +SCEEK+ +I ++ + E + SPQ QE+
Sbjct: 453 PNDLDSAMKQNFHSRLVVDDEASESCEEKNSNISSVAEKFEKVLSPQPSSNQEN 506
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457803|ref|XP_004146637.1| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/720 (58%), Positives = 497/720 (69%), Gaps = 45/720 (6%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
MAKRGYKLQEF AHS NVNC+SIGKKACR ITGGDD KVNLWAIGKP +LMSLCG ++P
Sbjct: 1 MAKRGYKLQEFAAHSGNVNCLSIGKKACRLFITGGDDYKVNLWAIGKPNSLMSLCGHTNP 60
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SVAFDSAEVLVLAGAS+G IKLWDLEE+KMVRTL+GH+SNCTAVEFHPFGEFFASG
Sbjct: 61 VESVAFDSAEVLVLAGASSGAIKLWDLEEAKMVRTLSGHRSNCTAVEFHPFGEFFASGSR 120
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTNLKIWDIRKKGCIHTYKGHT+GI+TI+FTPDGRWVVSGGFD+ VKVWDLTAGKL+HDF
Sbjct: 121 DTNLKIWDIRKKGCIHTYKGHTQGISTIKFTPDGRWVVSGGFDSAVKVWDLTAGKLMHDF 180
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
KFHEG IRSIDFHPLEFLLATGSAD+TVKFWDLETFELIGSTRPE GV AITFHPDGRT
Sbjct: 181 KFHEGPIRSIDFHPLEFLLATGSADKTVKFWDLETFELIGSTRPEAAGVRAITFHPDGRT 240
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
LFSG D++LKVYSWEPVICHDSVDMGWSTLGDLCI+ GKLL CS YRNSVG+WVADV+ +
Sbjct: 241 LFSGLDESLKVYSWEPVICHDSVDMGWSTLGDLCIHAGKLLSCSSYRNSVGVWVADVALI 300
Query: 301 EPYGV----GAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTI 356
EPYG G EP + N S S + TS +S SPDYETK+IK I
Sbjct: 301 EPYGASSVSGQKEPKEQNLGSAFKNSLASKSTGSDLV----TSNLQSLSPDYETKEIKNI 356
Query: 357 YVDSTGGKPVASQKIGPLNSPKVVPPLDSEEISDLQTEKQNPAIGVPELSNGQALDKSFI 416
Y+D+TGGKPV+ QK L+SPK+V LDS+EIS ++KQN A V S+ + DK
Sbjct: 357 YIDTTGGKPVSPQKAESLSSPKIVFALDSKEISYNASKKQNLASRVEVKSSELSKDK--- 413
Query: 417 VPSIVPQESPAGKDSSFSAGESITFSRTKPGMLLRPAHVQKPSNSKYDAERLSTAAES-- 474
P ++P +SP KD S ESITFS+T+ GMLLRPAH++KPSNSK D E+LS + +S
Sbjct: 414 -PPVIPCDSPEVKDPPSSVRESITFSKTRRGMLLRPAHIRKPSNSKIDLEKLSVSVDSSR 472
Query: 475 ----------ESLN--SKKSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIEN 522
+S+N + +DL+ A N+KT VS C I E
Sbjct: 473 KTDLERLPVVDSVNVCNTTNDLNKAPVQNLKTSVVSEVIHVDPCGTNSDLISIEKFEKIP 532
Query: 523 IFSPQKPPKQEDGDKSRDCSKITNSVKFVNGVAVVPGRTRSLVERFERREKVNSNEDLAA 582
S + +QE +KS + S+ NSVKFVNGVAVVPGRTR+LVERFERREK N D+
Sbjct: 533 SVSAETTSEQETCNKSVENSEGANSVKFVNGVAVVPGRTRTLVERFERREKTN---DVQT 589
Query: 583 NVIP-------QTRLSRNEDQAADVTPQTTLSSNEDHVANVTSQTRLNGNEYQAATAPQQ 635
+ P +TR N + VTPQ L + + H T+ R++ + + +
Sbjct: 590 TISPSNVLEPEKTREQTNSLEVQVVTPQ-ILETEKTH--EQTNDFRVHEVTMPSHVSETE 646
Query: 636 TRL--SSNIDPVANVTPQTL--PSGNEDQAAN--VTPQTRPSSNEDQTANVIRQTRPSSN 689
TR +SN + A P + P +Q N V P + E + + + +P SN
Sbjct: 647 TRCERTSNYEVQAVAIPSHVSEPEKAREQTNNYEVRAMVIPRTPETKRMGINYEAKPRSN 706
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449488504|ref|XP_004158060.1| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/605 (64%), Positives = 447/605 (73%), Gaps = 40/605 (6%)
Query: 1 MAKRGYKL--------------QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIG 46
MAKRGYKL +EF AHS NVNC+SIGKKACR ITGGDD KVNLWAIG
Sbjct: 1 MAKRGYKLRILSNLIFLTYLKLEEFAAHSGNVNCLSIGKKACRLFITGGDDYKVNLWAIG 60
Query: 47 KPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAV 106
KP +LMSLCG ++PV+SVAFDSAEVLVLAGAS+G IKLWDLEE+KMVRTL+GH+SNCTAV
Sbjct: 61 KPNSLMSLCGHTNPVESVAFDSAEVLVLAGASSGAIKLWDLEEAKMVRTLSGHRSNCTAV 120
Query: 107 EFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVV 166
EFHPFGEFFASG DTNLKIWDIRKKGCIHTYKGHT+GI+TI+FTPDGRWVVSGGFD+ V
Sbjct: 121 EFHPFGEFFASGSRDTNLKIWDIRKKGCIHTYKGHTQGISTIKFTPDGRWVVSGGFDSAV 180
Query: 167 KVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEV 226
KVWDLTAGKL+HDFKFHEG IRSIDFHPLEFLLATGSAD+TVKFWDLETFELIGSTRPE
Sbjct: 181 KVWDLTAGKLMHDFKFHEGPIRSIDFHPLEFLLATGSADKTVKFWDLETFELIGSTRPEA 240
Query: 227 TGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFY 286
GV AITFHPDGRTLFSG D++LKVYSWEPVICHDSVDMGWSTLGDLCI+ GKLL CS Y
Sbjct: 241 AGVRAITFHPDGRTLFSGLDESLKVYSWEPVICHDSVDMGWSTLGDLCIHAGKLLSCSSY 300
Query: 287 RNSVGIWVADVSHVEPYGV----GAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFR 342
RNSVG+WVADV+ +EPYG G EP + N S S + TS +
Sbjct: 301 RNSVGVWVADVALIEPYGASSVSGQKEPKEQNLGSAFKNSLASKSTGSDLV----TSNLQ 356
Query: 343 STSPDYETKDIKTIYVDSTGGKPVASQKIGPLNSPKVVPPLDSEEISDLQTEKQNPAIGV 402
S SPDYETK+IK IY+D+TGGKPV+ QK L+SPK+V LDS+EIS ++KQN A V
Sbjct: 357 SLSPDYETKEIKNIYIDTTGGKPVSPQKAESLSSPKIVFALDSKEISYNASKKQNLASRV 416
Query: 403 PELSNGQALDKSFIVPSIVPQESPAGKDSSFSAGESITFSRTKPGMLLRPAHVQKPSNSK 462
S+ + DK P ++P +SP KD S ESITFS+T+ GMLLRPAH++KPSNSK
Sbjct: 417 EVKSSELSKDK----PPVIPCDSPEVKDPPSSVRESITFSKTRRGMLLRPAHIRKPSNSK 472
Query: 463 YDAERLSTAAES------------ESLN--SKKSDLDSAVDPNVKTRFVSSDGARKSCEE 508
D E+LS + +S +S+N + +DL+ A N+KT VS C
Sbjct: 473 IDLEKLSVSVDSSRKTDLERLPVVDSVNVCNTTNDLNKAPVQNLKTSVVSEVIHVDPCGT 532
Query: 509 KDCHIKTITGEIENIFSPQKPPKQEDGDKSRDCSKITNSVKFVNGVAVVPGRTRSLVERF 568
I E S + +QE +KS + S+ NSVKFVNGVAVVPGRTR+LVERF
Sbjct: 533 NSDLISIEKFEKIPSVSAETTSEQETCNKSVENSEGANSVKFVNGVAVVPGRTRTLVERF 592
Query: 569 ERREK 573
ERREK
Sbjct: 593 ERREK 597
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1072 | ||||||
| TAIR|locus:2154438 | 837 | AT5G23430 "AT5G23430" [Arabido | 0.283 | 0.363 | 0.710 | 2.4e-166 | |
| TAIR|locus:2150788 | 839 | AT5G08390 "AT5G08390" [Arabido | 0.487 | 0.623 | 0.475 | 3.5e-165 | |
| TAIR|locus:2202129 | 1021 | AT1G11160 "AT1G11160" [Arabido | 0.817 | 0.857 | 0.413 | 4.9e-156 | |
| RGD|1311256 | 655 | Katnb1 "katanin p80 (WD repeat | 0.308 | 0.505 | 0.453 | 6.4e-106 | |
| UNIPROTKB|Q9BVA0 | 655 | KATNB1 "Katanin p80 WD40 repea | 0.291 | 0.476 | 0.474 | 1.3e-105 | |
| UNIPROTKB|E2QTQ5 | 655 | KATNB1 "Uncharacterized protei | 0.291 | 0.476 | 0.471 | 2.7e-105 | |
| MGI|MGI:1921437 | 658 | Katnb1 "katanin p80 (WD40-cont | 0.308 | 0.503 | 0.453 | 4.1e-102 | |
| UNIPROTKB|A6QQU1 | 663 | KATNB1 "KATNB1 protein" [Bos t | 0.466 | 0.754 | 0.362 | 5.2e-102 | |
| ZFIN|ZDB-GENE-040426-1954 | 694 | katnb1 "katanin p80 (WD repeat | 0.278 | 0.430 | 0.468 | 1.6e-100 | |
| UNIPROTKB|Q5ZIU8 | 657 | KATNB1 "Katanin p80 WD40 repea | 0.283 | 0.462 | 0.470 | 1.4e-99 |
| TAIR|locus:2154438 AT5G23430 "AT5G23430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1228 (437.3 bits), Expect = 2.4e-166, Sum P(2) = 2.4e-166
Identities = 216/304 (71%), Positives = 260/304 (85%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
KR YKLQEFVAHSA VNC+ IG+K+ R L+TGG+D KVNLWAIGKP A++SL G SS +D
Sbjct: 4 KRAYKLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGID 63
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
SV FD++EVLV AGA++G IKLWDLEE+K+VRTLTGH+SNC +V+FHPFGEFFASG +DT
Sbjct: 64 SVTFDASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT 123
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
NLKIWDIRKKGCIHTYKGHTRG+N +RFTPDGRWVVSGG DN+VKVWDLTAGKLL +FK
Sbjct: 124 NLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKS 183
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
HEG I+S+DFHP EFLLATGSADRTVKFWDLETFELIGS PE GV ++F+PDG+T+
Sbjct: 184 HEGQIQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGKTVL 243
Query: 243 SGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEP 302
G ++LK++SWEP+ CHD VD+GWS L D+ +++GKLLGCS+ ++ VG+WV D+S EP
Sbjct: 244 CGLQESLKIFSWEPIRCHDGVDVGWSRLSDMNVHEGKLLGCSYNQSCVGVWVVDLSRTEP 303
Query: 303 YGVG 306
G
Sbjct: 304 CMAG 307
|
|
| TAIR|locus:2150788 AT5G08390 "AT5G08390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1240 (441.6 bits), Expect = 3.5e-165, Sum P(2) = 3.5e-165
Identities = 262/551 (47%), Positives = 341/551 (61%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
KR YKLQEFVAHSA VNC+ IG+K+ R L+TGG+D KVNLWAIGKP A++SL G SS +D
Sbjct: 4 KRAYKLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGID 63
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
SV FD++E LV AGA++G IKLWDLEE+K+VRTLTGH+SNC +V FHPFGEFFASG +DT
Sbjct: 64 SVTFDASEGLVAAGAASGTIKLWDLEEAKVVRTLTGHRSNCVSVNFHPFGEFFASGSLDT 123
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
NLKIWDIRKKGCIHTYKGHTRG+N +RFTPDGRW+VSGG DNVVKVWDLTAGKLLH+FK
Sbjct: 124 NLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVWDLTAGKLLHEFKS 183
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
HEG I+S+DFHP EFLLATGSAD+TVKFWDLETFELIGS E TGV +TF+PDG+++
Sbjct: 184 HEGKIQSLDFHPHEFLLATGSADKTVKFWDLETFELIGSGGTETTGVRCLTFNPDGKSVL 243
Query: 243 SGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEP 302
G ++LK++SWEP+ CHD VD+GWS L D+ +++GKLLGCS+ +N VG+WV D+S EP
Sbjct: 244 CGLQESLKIFSWEPIRCHDGVDVGWSNLSDMNVHEGKLLGCSYNQNCVGVWVVDLSRTEP 303
Query: 303 YGVGAPEPDQ--SICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDY-ETKDIKTIYVD 359
GA + + + + G + I+G+ G + P ETK + + V
Sbjct: 304 MSGGATQSNSHPEKTSGSGRDQAGLNDNSSKVILGK-LPGSQKVDPLLKETKSLGKLSVS 362
Query: 360 STG----------GKPVASQKIGPL-NSPKVVPPLDSEEISDLQTEKQNPAIGVPELSNG 408
G+ SQ PL PK + + SD T K++ + S G
Sbjct: 363 QNSDPLPKDTKSTGRSSVSQSSDPLVKEPKPLGRFSATHSSD--TVKESRTLS----STG 416
Query: 409 QALDKSFIVPSIVPQESPAGKDSSF--SAGESITFSRTKPGMLLRPAHVQKPSNSKYDAE 466
D V +S +G + +A F + P P V K
Sbjct: 417 SVSDSPHRVTLTSAPKSASGISTVVPNAAASKRNFGKANPKA--NPPVVNKEDYFPVIVP 474
Query: 467 RLSTAAESESLNSKKSDLDSAVDP-NVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFS 525
R E S + + D+ P +++++ S S E D ++ ++
Sbjct: 475 RTEPIIEQASESRAELDIIGRTMPYSLQSKAADSRRLSSSRNEPDLPTSSLLERSQS--Q 532
Query: 526 PQKPPKQEDGD 536
P +P +DG+
Sbjct: 533 PIEPITLQDGN 543
|
|
| TAIR|locus:2202129 AT1G11160 "AT1G11160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1521 (540.5 bits), Expect = 4.9e-156, P = 4.9e-156
Identities = 404/976 (41%), Positives = 539/976 (55%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
MAKRGYKLQEFVAHS NVNC+SIGKK R L+TGGDD KVNLW+IGK T+ MSLCG +SP
Sbjct: 1 MAKRGYKLQEFVAHSGNVNCLSIGKKTSRLLLTGGDDYKVNLWSIGKTTSPMSLCGHTSP 60
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
VDSVAF+S EVLVLAGAS+GVIKLWDLEESKMVR TGH+SNC+AVEFHPFGEF ASG
Sbjct: 61 VDSVAFNSEEVLVLAGASSGVIKLWDLEESKMVRAFTGHRSNCSAVEFHPFGEFLASGSS 120
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTNL++WD RKKGCI TYKGHTRGI+TI F+PDGRWVVSGG DNVVKVWDLTAGKLLH+F
Sbjct: 121 DTNLRVWDTRKKGCIQTYKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDLTAGKLLHEF 180
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
K HEG IRS+DFHPLEFLLATGSADRTVKFWDLETFELIG+TRPE TGV AI FHPDG+T
Sbjct: 181 KCHEGPIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGTTRPEATGVRAIAFHPDGQT 240
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
LF G DD LKVYSWEPVIC D VDMGWSTLGD CIN+GK +GCS+YRNSVGIWV+D+S +
Sbjct: 241 LFCGLDDGLKVYSWEPVICRDGVDMGWSTLGDFCINEGKFIGCSYYRNSVGIWVSDISEL 300
Query: 301 EPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFR-STSPDYETKDIKTIYVD 359
EPYG A D++ C +F+ S E++G SG R S SPDYET++IK IYVD
Sbjct: 301 EPYG--AVSEDKNECMVKRFSVLNDQS-ERMG------SGPRGSVSPDYETREIKNIYVD 351
Query: 360 STGGKPVASQKIGPLNSPKVVPPLDSEEISDLQTEKQNPAIGVP---ELSNGQALDKSFI 416
STGG +Q G L K PL+S +++ + +EKQN A P + S+ S
Sbjct: 352 STGGNLNVAQNPGSL---KATLPLESGKVATMVSEKQNAAYFGPAGDKYSSTSRDSDSGE 408
Query: 417 VPSIVPQES-PAGKDSS------FSAGESIT-FSRTKPGMLLRPAHVQKPSNSKYDAERL 468
S +ES P + S +++ F +K +++ A +K + + +
Sbjct: 409 ESSYSERESIPFSRTKSGMLLRPAHVRKTLAKFEESKQSAVVQSATRKKSGLAVEEEPQT 468
Query: 469 STAAESESLNSKKSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQK 528
A SE SK D + ++ + +F EK + T E +F K
Sbjct: 469 QNAFLSEQNASKPFDAEDSIIKGITNKF-----------EKALSSEPPTDEANRMFL--K 515
Query: 529 PPK--QEDGDKSRDCSKITNS--VKFVNG-------VAVVPGRTRSLVERFERR-EKVNS 576
PP+ + K D + ++ F G V +P +T ++ R + E+ N+
Sbjct: 516 PPRIHRSSNSKYNDTRRAMSADPATFGKGGMENSGDVEDIPSKTERVLSREKPGDEQKNT 575
Query: 577 NEDLAANVIPQTRLSRNEDQAADVTPQTT--LSSNEDHVANVTSQTRLNGNEYQAATAPQ 634
+ + ++ + + T E + T + N P+
Sbjct: 576 EYPSGSRELNPVKIVEGVNVVSGRTRSLVEKFERGEKTTHTEGASTTIEQNNNAVQEDPR 635
Query: 635 QTRLSSNIDPV-----ANVTP-QTLPSG-NEDQAANVTPQTRPSSNEDQTANVIRQTRPS 687
+T + PV A TP + +P N D +NVT P + Q A R S
Sbjct: 636 KTSRQTGETPVISTRRARSTPARVMPIVLNRD--SNVTSDEPPLT---QPA------RTS 684
Query: 688 SNEDQAVIVNPQTRRHSNEDQASNIAPYTRHDRNEDRATNITPQSKISRNQDQATNITSH 747
S VI+N + + D+ S +A T+ R I P ++ NQ ATNITS
Sbjct: 685 SFPVMPVILNQAS--NVTYDEPS-VA-LTQESRTSH--ARILP---VTFNQ--ATNITSE 733
Query: 748 MGLNSNENRATNIPSRSR-LNSREDQSTNTPSQTIVNGAENKATKTPTQMRLKSSENQVT 806
+ + N +R R + + S P ++ + A PT +L S N +
Sbjct: 734 EASVTLRRQRRNSAARVRPVLLSQATSHECPVTSVRPLRTSPARVMPT--KLNQSVNMTS 791
Query: 807 STPPRARLN--SSIEGQATNIPIRRRFNRNVDQT--TNVT--------RHRRSISNTDQA 854
T A ++ S + AT I + + +D+T T + + +IS+ +
Sbjct: 792 DTSHIASMHRVSPTQMLATPTVIDQVADMTLDETHATQIQPACDNMPQKEEPNISDREDD 851
Query: 855 TSTTAHVAVKNNDDIATVITPHVTALSYER----TSTPKGEPQISGRDTPVANEGEAVES 910
+ T ++ + +N+ ++T + +T L R S KG + T + + + +
Sbjct: 852 SDITENLMLTHNEFLST-LQSRLTKLQIVRHFWERSDVKGAIGALRKLTDQSVQADVISI 910
Query: 911 LMETHDIFISTLRSRL 926
L E +I + S+L
Sbjct: 911 LTEKIEILTLDMFSQL 926
|
|
| RGD|1311256 Katnb1 "katanin p80 (WD repeat containing) subunit B 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 864 (309.2 bits), Expect = 6.4e-106, Sum P(3) = 6.4e-106
Identities = 150/331 (45%), Positives = 231/331 (69%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
+ K +KLQE VAH++NV+ + +GK + R L TGGDD +VNLW+I KP +MSL G +SP
Sbjct: 6 VTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP 65
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SV ++ E L++AG+ +G I++WDLE +K++RTL GHK+N +++FHP+GEF ASG
Sbjct: 66 VESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQ 125
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTN+K+WDIR+KGC+ Y+GH++ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +F
Sbjct: 126 DTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEF 185
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
H G + ++FHP E+LLA+GS+DRT++FWDLE F+++ E V ++ F+PDG
Sbjct: 186 PGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCC 245
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
L+SG D+L+VY WEP C D V + W + DL I + +L+G +F +++V +V D++ V
Sbjct: 246 LYSGCQDSLRVYGWEPERCFDVVLVNWGKVADLAICNDQLIGVAFSQSNVSSYVVDLTRV 305
Query: 301 EPYGVGAPEPDQSICTEVKFNPPGSHSLEKV 331
G +P Q+ + + P SL ++
Sbjct: 306 TRTGTVTQDPVQASQPQTQQTPNPGVSLRRI 336
|
|
| UNIPROTKB|Q9BVA0 KATNB1 "Katanin p80 WD40 repeat-containing subunit B1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 859 (307.4 bits), Expect = 1.3e-105, Sum P(3) = 1.3e-105
Identities = 148/312 (47%), Positives = 224/312 (71%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
+ K +KLQE VAH++NV+ + +GK + R L TGGDD +VNLW+I KP +MSL G +SP
Sbjct: 6 VTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP 65
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SV ++ E L++AG+ +G I++WDLE +K++RTL GHK+N +++FHP+GEF ASG
Sbjct: 66 VESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQ 125
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTN+K+WDIR+KGC+ Y+GH++ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +F
Sbjct: 126 DTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEF 185
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
H G + ++FHP E+LLA+GS+DRT++FWDLE F+++ E V ++ F+PDG
Sbjct: 186 PGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCC 245
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
L+SG D+L+VY WEP C D V + W + DL I + +L+G +F +++V +V D++ V
Sbjct: 246 LYSGCQDSLRVYGWEPERCFDVVLVNWGKVADLAICNDQLIGVAFSQSNVSSYVVDLTRV 305
Query: 301 EPYGVGAPEPDQ 312
G A +P Q
Sbjct: 306 TRTGTVARDPVQ 317
|
|
| UNIPROTKB|E2QTQ5 KATNB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 859 (307.4 bits), Expect = 2.7e-105, Sum P(3) = 2.7e-105
Identities = 147/312 (47%), Positives = 224/312 (71%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
+ K +KLQE VAH++NV+ + +GK + R L TGGDD +VNLW+I KP +MSL G +SP
Sbjct: 6 VTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP 65
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SV ++ E L++AG+ +G I++WDLE +K++RTL GHK+N +++FHP+GEF ASG
Sbjct: 66 VESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQ 125
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTN+K+WDIR+KGC+ Y+GH++ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +F
Sbjct: 126 DTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEF 185
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
H G + ++FHP E+LLA+GS+DRT++FWDLE F+++ E V ++ F+PDG
Sbjct: 186 PGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCC 245
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
L+SG D+L+VY WEP C D V + W + DL + + +L+G +F +++V +V D++ V
Sbjct: 246 LYSGCQDSLRVYGWEPERCFDVVLVSWGKVADLAVCNDQLIGVAFSQSNVSSYVVDLTRV 305
Query: 301 EPYGVGAPEPDQ 312
G A +P Q
Sbjct: 306 TRTGTVAQDPVQ 317
|
|
| MGI|MGI:1921437 Katnb1 "katanin p80 (WD40-containing) subunit B 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 858 (307.1 bits), Expect = 4.1e-102, Sum P(2) = 4.1e-102
Identities = 150/331 (45%), Positives = 230/331 (69%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
+ K +KLQE VAH++NV+ + +GK + R L TGGDD +VNLW+I KP +MSL G +SP
Sbjct: 6 VTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP 65
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SV ++ E L++AG+ +G I++WDLE +K++RTL GHK+N +++FHP+GEF ASG
Sbjct: 66 VESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQ 125
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTN+K+WDIR+KGC+ Y+GH++ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +F
Sbjct: 126 DTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEF 185
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
H G + ++FHP E+LLA+GS+DRT++FWDLE F+++ E V ++ F+PDG
Sbjct: 186 PGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCC 245
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
L+SG D+L+VY WEP C D V + W + DL I + +L+G +F +++V +V D++ V
Sbjct: 246 LYSGCQDSLRVYGWEPERCFDVVLVNWGKVADLAICNDQLIGVAFSQSNVSSYVVDLTRV 305
Query: 301 EPYGVGAPEPDQSICTEVKFNPPGSHSLEKV 331
G +P Q+ + P SL ++
Sbjct: 306 TRTGTVTQDPVQANQPLTQQTPNPGVSLRRI 336
|
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| UNIPROTKB|A6QQU1 KATNB1 "KATNB1 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 863 (308.9 bits), Expect = 5.2e-102, Sum P(2) = 5.2e-102
Identities = 194/535 (36%), Positives = 296/535 (55%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
+ K +KLQE VAH++NV+ + +GK + R L TGGDD +VNLW+I KP +MSL G +SP
Sbjct: 6 VTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP 65
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SV ++ E L++AG+ +G I++WDLE +K++RTL GHK+N +++FHP+GEF ASG
Sbjct: 66 VESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQ 125
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTN+K+WDIR+KGC+ Y+GH++ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +F
Sbjct: 126 DTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEF 185
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
H G + ++FHP E+LLA+GS+DRT++FWDLE F+++ E V +I F+PDG
Sbjct: 186 PGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSILFNPDGCC 245
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
L+SG D+L+VY WEP C D V + W + DL I + +L+G +F +++V +V D++ V
Sbjct: 246 LYSGCQDSLRVYGWEPERCFDVVLVHWGKVADLAICNNQLIGVAFSQSNVSSYVVDLTRV 305
Query: 301 EPYGVGAPEPDQSICTEVKFNPPGSHSLEKV------------GIIGRSTSGFRSTSPDY 348
G A +P Q + P S L ++ + S S RS S +
Sbjct: 306 TRTGTVARDPVQDSRPPTQQPPHPSAPLRRIYERPSTACSKPQRVKQNSESERRSPSSE- 364
Query: 349 ETKDIKTIYVDSTGGKPVASQKIGPLNSPKVVPPLDSEEISDLQTEKQNPAIGVPELSNG 408
+ +D + + + ++ P NS PP SE + + A
Sbjct: 365 DDRDERESRAEIQNAEDY-NEIFQPKNSISRTPPRRSEPFP--APPEDDMATAKEAAKPS 421
Query: 409 QALDKSFIVPSIVPQESPAGKDSSFSAGESITFSRTKPGMLLRPAHVQKPSNSKYDAERL 468
A D F VP+I P G AG SR P + PA +P+ +
Sbjct: 422 PATDAQFPVPNICP-----G-----GAGTLEVLSRP-PVVTSTPAPKAEPA--------I 462
Query: 469 STAAESESLNSKKSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENI 523
A +E + K SD AV + V D + + D +T +N+
Sbjct: 463 FPATRNEPIGLKASDFLPAVKIPQQAELVDEDAMSQIRKGHDTMCVVLTSRHKNL 517
|
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| ZFIN|ZDB-GENE-040426-1954 katnb1 "katanin p80 (WD repeat containing) subunit B 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 825 (295.5 bits), Expect = 1.6e-100, Sum P(2) = 1.6e-100
Identities = 140/299 (46%), Positives = 214/299 (71%)
Query: 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVA 65
+KLQE VAHS+NV+ + +GK + R L TGG+D +VN+WA+ KP +MSL G +S V +
Sbjct: 11 WKLQEIVAHSSNVSSLVLGKSSGRLLATGGEDCRVNIWAVSKPNCIMSLTGHTSAVGCIQ 70
Query: 66 FDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLK 125
F+S+E V+AG+ +G ++LWDLE +K++RTL GHK++ ++++FHP GE+ ASG +D+N+K
Sbjct: 71 FNSSEERVVAGSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIK 130
Query: 126 IWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG 185
+WD+R+KGC+ YKGHT+ + + F+PDG+W+ S D+ VK+WDL AGK++ +F H
Sbjct: 131 LWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFTSHTS 190
Query: 186 HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF 245
+ + FHP E+LLA+GSADRTVK WDLE F +IGS+ E V ++ F+PDG L+SG
Sbjct: 191 AVNVVQFHPNEYLLASGSADRTVKLWDLEKFNMIGSSEGETGVVRSVLFNPDGSCLYSGS 250
Query: 246 DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYG 304
++ L+VY WEP C D V +GW + DL I++ +++ S+ +V +V D++ V+ G
Sbjct: 251 ENTLRVYGWEPDRCFDVVHVGWGKVSDLAISNNQMIAVSYSHTNVSWYVVDLNRVKKSG 309
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| UNIPROTKB|Q5ZIU8 KATNB1 "Katanin p80 WD40 repeat-containing subunit B1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 849 (303.9 bits), Expect = 1.4e-99, Sum P(2) = 1.4e-99
Identities = 143/304 (47%), Positives = 215/304 (70%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
+ K +KLQE VAHS+NV+ + +GK R L TGGDD +VN+W++ KP +MSL G ++P
Sbjct: 6 VTKTAWKLQEIVAHSSNVSSLVLGKSTGRLLATGGDDCRVNVWSVNKPNCVMSLTGHTTP 65
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
++S+ + E L++AG+ +G I++WDLE +K++RTL GHK+N +++FHP+G F ASG +
Sbjct: 66 IESLQISAKEELIVAGSQSGSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSFVASGSL 125
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DT++K+WD+R+KGCI YK HT+ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +F
Sbjct: 126 DTDIKLWDVRRKGCIFKYKSHTQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKVMFEF 185
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
H G + ++FHP E+LLA+GS+DRT++FWDLE F ++ E T V I F+PDG
Sbjct: 186 TGHSGPVNVVEFHPSEYLLASGSSDRTIRFWDLEKFHVVSCIEEEATPVRCILFNPDGCC 245
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
L+ GF D+L+VY WEP C D V + W + DL + +L+G SF +++V +V D+S V
Sbjct: 246 LYGGFQDSLRVYGWEPERCFDVVVVNWGKVADLSVCHNQLIGVSFAQSTVSSFVVDLSRV 305
Query: 301 EPYG 304
G
Sbjct: 306 TKSG 309
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | AT1G61210 | WD-40 repeat family protein / katanin p80 subunit, putative; WD-40 repeat family protein / katanin p80 subunit, putative; FUNCTIONS IN- nucleotide binding; LOCATED IN- CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN- 10 plant structures; EXPRESSED DURING- 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s- WD40 repeat-like (InterPro-IPR011046), WD40 repeat, region (InterPro-IPR017986), WD40/YVTN repeat-like (InterPro-IPR015943), WD40 repeat (InterPro-IPR001680); BES [...] (1180 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | DDB1B | DDB1B (Damaged DNA Binding Protein 1 B); damaged DNA binding / protein binding; One of two clos [...] (1088 aa) | • | • | 0.884 | ||||||
 | DDB1A | DDB1A (DAMAGED DNA BINDING PROTEIN 1A); DNA binding / protein binding; Structurally similar to [...] (1088 aa) | • | • | 0.873 | ||||||
 | ERH3 | ERH3 (ECTOPIC ROOT HAIR 3); ATP binding / nucleoside-triphosphatase/ nucleotide binding; encode [...] (523 aa) | • | 0.869 | |||||||
 | CUL4 | CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase; Arabidopsis CULLIN4 (CUL4) forms an [...] (792 aa) | • | 0.847 | |||||||
 | AT5G49430 | transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (1677 aa) | • | • | 0.536 | ||||||
 | AT2G47410 | nucleotide binding; nucleotide binding; FUNCTIONS IN- nucleotide binding; LOCATED IN- CUL4 RING [...] (1520 aa) | • | • | 0.525 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1072 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-60 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-57 | |
| pfam13925 | 164 | pfam13925, Katanin_con80, con80 domain of Katanin | 4e-56 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-43 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-31 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-26 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-19 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-10 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 4e-10 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-08 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-08 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-08 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-08 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 1e-07 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 1e-06 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 1e-05 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 2e-05 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 1e-04 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 1e-04 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 207 bits (528), Expect = 5e-60
Identities = 87/254 (34%), Positives = 134/254 (52%), Gaps = 2/254 (0%)
Query: 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFD 67
+ H+ V C++ + L TG D + +W + L +L G + PV VA
Sbjct: 2 RRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 68 SAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIW 127
+ + +G+S I+LWDLE + VRTLTGH S ++V F P G +S D +K+W
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 128 DIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHI 187
D+ C+ T +GHT +N++ F+PDG +V S D +K+WDL GK + H G +
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV 180
Query: 188 RSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247
S+ F P L + S+D T+K WDL T + +G+ R GV+++ F PDG L SG +D
Sbjct: 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240
Query: 248 N-LKVYSWEPVICH 260
++V+ C
Sbjct: 241 GTIRVWDLRTGECV 254
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 197 bits (504), Expect = 7e-57
Identities = 84/255 (32%), Positives = 135/255 (52%), Gaps = 8/255 (3%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKAC---RFLITGGDDQKVNLWAIGKPTALMSLCGLSS 59
+ G L+ H+ V ++ A +L +G D+ + LW + + +L G +S
Sbjct: 39 ETGELLRTLKGHTGPVRDVA----ASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS 94
Query: 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGC 119
V SVAF ++ + + IK+WD+E K + TL GH +V F P G F AS
Sbjct: 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS 154
Query: 120 MDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHD 179
D +K+WD+R C+ T GHT +N++ F+PDG ++S D +K+WDL+ GK L
Sbjct: 155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT 214
Query: 180 FKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGR 239
+ HE + S+ F P +LLA+GS D T++ WDL T E + + V ++ + PDG+
Sbjct: 215 LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGK 274
Query: 240 TLFSG-FDDNLKVYS 253
L SG D ++++
Sbjct: 275 RLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|222456 pfam13925, Katanin_con80, con80 domain of Katanin | Back alignment and domain information |
|---|
Score = 190 bits (486), Expect = 4e-56
Identities = 78/164 (47%), Positives = 105/164 (64%), Gaps = 5/164 (3%)
Query: 912 METHDIFISTLRSRLTKLQVVRHFWERNDIKGGINALRKLPDHS--ADVMSVLM--EKME 967
+ HD +S L SRLTKL+VVR W +NDIKG I A R++ D + DV+SVL K E
Sbjct: 1 SKDHDTMLSVLSSRLTKLKVVRTLWRQNDIKGAIAAARRMNDLAVLVDVLSVLTQSLKKE 60
Query: 968 ILNLDLFLCLLPMLMGLLDSKMERHASISLEMLLKLVVVFGPMIHSTLSAPPA-VGVDLH 1026
+ LDL + LLP++ LL SK ERH + LE L ++ FGP+I S LSA P+ VGVDL
Sbjct: 61 SITLDLCVDLLPLVEELLQSKYERHILVGLETLRSILKKFGPVIRSALSAAPSSVGVDLS 120
Query: 1027 AEQRRECCNRCFMQLQKIQKILPILERRGGLLAKCAHELNLVLQ 1070
E+R + C +C QL+KI++I+ +L RR G + + A EL L L
Sbjct: 121 REERLQKCQKCKQQLKKIKQIVKLLARRKGSVGELARELQLELP 164
|
The con80 domain of katanin is the C-terminal region of the protein that binds to the N-terminal domain of katanin-p60, the catalytic ATPase. The complex associates with a specific subregion of the mitotic spindle leading to increased microtubule disassembly and targeting of p60 to the spindle poles. The assembly and function of the mitotic spindle requires the activity of a number of microtubule-binding proteins. Katanin, a heterodimeric microtubule-severing ATPase, is found localized at mitotic spindle poles. A proposed model is that katanin is targeted to spindle poles through a combination of direct microtubule binding by the p60 subunit and through interactions between the WD40 domain and an unknown protein. Length = 164 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 4e-43
Identities = 52/163 (31%), Positives = 88/163 (53%), Gaps = 1/163 (0%)
Query: 92 MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFT 151
+ RTL GH T V F P G+ A+G D +K+WD+ + T KGHT + + +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 152 PDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFW 211
DG ++ SG D +++WDL G+ + H ++ S+ F P +L++ S D+T+K W
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 212 DLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN-LKVYS 253
D+ET + + + R V+++ F PDG + S D +K++
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD 163
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 129 bits (323), Expect = 2e-31
Identities = 77/256 (30%), Positives = 124/256 (48%), Gaps = 10/256 (3%)
Query: 2 AKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMS--LCGLSS 59
+ H ++ I+ L++G D + LW + L+ S
Sbjct: 52 SLPDLSSLLLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDS 110
Query: 60 PVDSVAF---DSAEVLVLAGASTGVIKLWDLE-ESKMVRTLTGHKSNCTAVEFHPFGEFF 115
V +A D +L+ + + G +KLWDL K++RTL GH + T++ F P G+
Sbjct: 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLL 170
Query: 116 ASG-CMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW-VVSGGFDNVVKVWDLTA 173
ASG +D +K+WD+R + T GHT ++++ F+PDG + SG D +++WDL+
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230
Query: 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF-ELIGSTRPEVTGVHAI 232
GKLL F P LLA+GS+D T++ WDL + L+ + + V ++
Sbjct: 231 GKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV 290
Query: 233 TFHPDGRTLFSGFDDN 248
F PDG+ L SG D
Sbjct: 291 AFSPDGKLLASGSSDG 306
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 112 bits (280), Expect = 5e-26
Identities = 79/224 (35%), Positives = 118/224 (52%), Gaps = 17/224 (7%)
Query: 29 RFLITGGDDQKVNLWAI-GKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87
L +G D + LW + + L +L G SS V SVAF L+ +G+S G ++LWDL
Sbjct: 254 SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL 313
Query: 88 EESK--MVRTLTGHKSNCTAVEFHPFGEFFASGCM-DTNLKIWDIRKKGCIHTYKGHTRG 144
E K TL GH+ +++ F P G SG D +++WD+R + T +GH+
Sbjct: 314 ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN- 372
Query: 145 INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA 204
+ ++ F+PDGR V SG D V++WDL+ G LL + H + S+DF P LA+GS+
Sbjct: 373 VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS 432
Query: 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN 248
D T++ WDL+T ++F PDG+ L S D
Sbjct: 433 DNTIRLWDLKTSLKS------------VSFSPDGKVLASKSSDL 464
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.5 bits (228), Expect = 2e-19
Identities = 65/204 (31%), Positives = 107/204 (52%), Gaps = 17/204 (8%)
Query: 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAI--GKPTALMSLCGLSSPVDSVA 65
L+ HS++V ++ + L +G D V LW + GK + ++L G PV S++
Sbjct: 277 LRTLSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335
Query: 66 F-DSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124
F +LV G+ G I+LWDL K ++TL GH SN +V F P G +SG D +
Sbjct: 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTV 394
Query: 125 KIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE 184
++WD+ + GHT + ++ F+PDG+ + SG DN +++WDL +
Sbjct: 395 RLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL------------K 442
Query: 185 GHIRSIDFHPLEFLLATGSADRTV 208
++S+ F P +LA+ S+D +V
Sbjct: 443 TSLKSVSFSPDGKVLASKSSDLSV 466
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-10
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWD 170
+ T KGHT + ++ F+PDG+++ SG D +K+WD
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 4e-10
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWD 170
+ T KGHT + ++ F+PDG + SG D V+VWD
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-08
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWD 212
G+LL K H G + S+ F P LA+GS D T+K WD
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-08
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD 128
K++RTL GH T+V F P G ASG D +++WD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-08
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWD 212
GKLL K H G + S+ F P LLA+GS D TV+ WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-08
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD 128
++++TL GH T+V F P G++ ASG D +K+WD
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 1e-07
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 17/129 (13%)
Query: 55 CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHP-FGE 113
CG++ S F + V G G I+L + V L GH S+ ++F+P F E
Sbjct: 32 CGIAC---SSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSE 88
Query: 114 FFASGCMDTNLKIWDIRKKG----------CIHTYKGHTRGINTIRFTPDGRWVV-SGGF 162
ASG D +++W+I CI KGH + I+ I + P +++ S GF
Sbjct: 89 ILASGSEDLTIRVWEIPHNDESVKEIKDPQCI--LKGHKKKISIIDWNPMNYYIMCSSGF 146
Query: 163 DNVVKVWDL 171
D+ V +WD+
Sbjct: 147 DSFVNIWDI 155
|
Length = 568 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (125), Expect = 1e-06
Identities = 47/161 (29%), Positives = 80/161 (49%), Gaps = 12/161 (7%)
Query: 105 AVEFHPFGEFFASGCMDTNLKIWD----IRKKGCIH----TYKGHTRGINTIRFTPDGRW 156
A+ F GEFFA+ ++ +KI++ I+ IH ++ +
Sbjct: 488 AIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQ 547
Query: 157 VVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE-FLLATGSADRTVKFWDLET 215
V S F+ VV+VWD+ +L+ + K HE + SID+ + LLA+GS D +VK W +
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607
Query: 216 FELIGSTRPEVTGVHAITFHPD-GRTLFSGFDDNLKVYSWE 255
IG+ + + + + F + GR+L G D+ KVY ++
Sbjct: 608 GVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADH-KVYYYD 646
|
Length = 793 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-05
Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 96 LTGHKSNCTAVEFHPFGE---FFASGCMDTNLKIWDIRKKGC-------IHTYKGHTRGI 145
L G + V F+PF F AS D + W I ++G I +GHT+ +
Sbjct: 71 LLGQEGPIIDVAFNPFDPQKLFTAS--EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKV 128
Query: 146 NTIRFTPDGRWVV-SGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA 204
+ F P V+ S G D VV VWD+ GK + K H I S++++ LL T S
Sbjct: 129 GIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSK 188
Query: 205 DRTVKFWD 212
D+ + D
Sbjct: 189 DKKLNIID 196
|
Length = 493 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 2e-05
Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 11/181 (6%)
Query: 37 DQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLA-GASTGVIKLWDLEESKMVRT 95
+ V +W + + + + V S+ + SA+ +LA G+ G +KLW + + + T
Sbjct: 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613
Query: 96 LTGHKSNCTAVEF-HPFGEFFASGCMDTNLKIWDIRK-KGCIHTYKGHTRGINTIRFTPD 153
+ K+N V+F G A G D + +D+R K + T GH++ ++ +RF D
Sbjct: 614 IKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-D 671
Query: 154 GRWVVSGGFDNVVKVWDLTAG------KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
+VS DN +K+WDL+ LH F H + + +ATGS
Sbjct: 672 SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE 731
Query: 208 V 208
V
Sbjct: 732 V 732
|
Length = 793 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 1e-04
Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 26/195 (13%)
Query: 28 CRFLITGGDDQKVNLWAIGKPTALMSLCG---LSSPVDSVAFDSAEVLVLAGASTGVIKL 84
C +I G D + + + L +C + S V S F+ GV+++
Sbjct: 512 CESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFE------------GVVQV 559
Query: 85 WDLEESKMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGCIHTYKGHTR 143
WD+ S++V + H+ ++++ ASG D ++K+W I + I T K
Sbjct: 560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKA- 618
Query: 144 GINTIRFTPD-GRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFL---- 198
I ++F + GR + G D+ V +DL KL GH +++ + + F+
Sbjct: 619 NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL--PLCTMIGHSKTVSY--VRFVDSST 674
Query: 199 LATGSADRTVKFWDL 213
L + S D T+K WDL
Sbjct: 675 LVSSSTDNTLKLWDL 689
|
Length = 793 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 9/141 (6%)
Query: 54 LCGLSSPVDSVAFDSAEVLVLAGAST-GVIKLWDLEE-------SKMVRTLTGHKSNCTA 105
L G P+ VAF+ + L AS G I W + E S + L GH
Sbjct: 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGI 130
Query: 106 VEFHPFGE-FFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN 164
V FHP AS D + +WD+ + + K H+ I ++ + DG + + D
Sbjct: 131 VSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDK 190
Query: 165 VVKVWDLTAGKLLHDFKFHEG 185
+ + D G ++ + H
Sbjct: 191 KLNIIDPRDGTIVSSVEAHAS 211
|
Length = 493 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 26/182 (14%)
Query: 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLW------AIGKPTALMSLCGL 57
R + E H V I L +G DD V LW +IG ++C +
Sbjct: 564 RSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCV 623
Query: 58 SSPVD---SVAFDSAEVLVLAGASTGVIKLWDLEESKM-VRTLTGHKSNCTAVEFHPFGE 113
P + S+AF SA+ V +DL K+ + T+ GH + V F
Sbjct: 624 QFPSESGRSLAFGSADHKVY---------YYDLRNPKLPLCTMIGHSKTVSYVRFVDSST 674
Query: 114 FFASGCMDTNLKIWDIR------KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVK 167
+S D LK+WD+ + +H++ GHT N + + ++ +G N V
Sbjct: 675 LVSSS-TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVF 733
Query: 168 VW 169
V+
Sbjct: 734 VY 735
|
Length = 793 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1072 | |||
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 100.0 | |
| PF13925 | 164 | Katanin_con80: con80 domain of Katanin | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.98 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.98 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.98 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.98 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.98 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.98 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.97 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.97 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.96 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.95 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.95 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.95 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.95 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.95 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.95 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.95 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.94 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.94 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| PTZ00421 | 493 | coronin; Provisional | 99.93 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.93 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.93 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.93 | |
| PTZ00421 | 493 | coronin; Provisional | 99.93 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.93 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.93 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.93 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.92 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.92 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.92 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.92 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.92 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.92 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.92 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.92 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.91 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.91 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.91 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.91 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.91 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.9 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.9 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.9 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.89 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.88 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.88 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.88 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.88 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.88 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.87 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.86 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.86 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.86 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.85 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.85 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.85 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.84 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.83 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.83 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.83 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.83 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.82 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.81 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.81 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.81 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.8 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.79 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.79 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.78 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.78 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.78 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.78 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.77 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.77 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.76 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.76 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.75 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.75 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.74 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.74 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.74 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.74 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.74 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.74 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.73 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.72 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.71 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.7 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.7 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.68 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.68 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.67 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.67 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.67 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.66 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.64 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.64 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.63 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.63 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.62 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.6 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.6 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.59 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.59 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.59 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.59 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.59 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.58 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.58 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.58 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.57 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.57 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.56 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.56 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.56 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.56 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.55 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.55 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.55 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.54 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.53 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.53 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.52 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.52 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.52 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.51 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.49 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.49 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.47 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.47 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.46 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.45 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.45 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.43 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.43 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.43 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.42 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.4 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.4 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.39 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.37 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.37 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.36 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.36 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.36 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.35 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.35 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.35 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.34 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.34 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.33 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.31 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.3 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.3 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.3 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.3 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.29 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.26 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.26 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.24 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.24 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.22 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.22 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.18 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.17 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.16 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.16 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.16 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.14 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.14 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.13 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.12 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.09 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.09 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.04 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.04 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.02 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.99 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.99 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.96 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.95 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.93 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.93 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.93 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.92 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.92 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.91 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.91 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.9 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.9 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.89 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.88 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.86 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.85 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.83 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.78 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.75 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.75 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.73 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.71 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.67 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.66 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.64 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.56 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.56 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.55 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.53 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.5 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.49 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.48 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.48 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.47 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.46 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.43 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.42 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.42 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.42 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.37 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.35 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.35 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.31 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.3 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.29 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.27 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.26 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.25 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.23 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.22 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.21 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.21 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.21 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.19 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.18 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.16 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.15 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.13 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.12 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.11 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.1 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.08 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.04 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.02 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.02 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.01 | |
| PF08149 | 80 | BING4CT: BING4CT (NUC141) domain; InterPro: IPR012 | 98.01 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.0 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.0 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.97 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.96 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.95 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.91 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.9 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.85 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.83 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.8 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.8 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.76 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.76 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.74 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.74 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.72 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.7 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.69 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.68 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.67 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.66 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.63 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.6 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.37 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.31 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.28 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.27 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.24 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.23 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.2 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.18 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.18 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.16 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.02 | |
| PRK10115 | 686 | protease 2; Provisional | 97.0 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.95 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.86 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.84 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.83 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.78 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.76 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.76 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.71 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.7 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.67 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.66 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.66 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.66 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.65 | |
| PRK10115 | 686 | protease 2; Provisional | 96.6 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.55 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 96.5 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.49 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.48 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.42 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.33 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.3 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.3 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.28 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.27 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.17 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.15 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.14 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.0 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.94 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.93 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.9 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.9 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.84 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.8 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.74 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.74 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 95.66 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.58 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.53 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.39 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 95.06 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.03 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 94.91 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.74 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 94.7 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.7 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.66 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.66 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 94.62 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 94.46 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.24 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.24 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.18 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 94.11 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 94.09 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 94.02 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.85 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.55 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.54 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 93.05 | |
| PLN02153 | 341 | epithiospecifier protein | 92.89 | |
| PLN02153 | 341 | epithiospecifier protein | 92.71 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 92.36 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 92.26 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 92.25 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 92.02 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 91.85 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 91.84 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 91.51 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 91.33 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 91.22 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 90.91 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 90.86 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 90.83 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 90.7 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 90.68 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 90.61 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 90.54 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 90.23 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 90.17 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 89.89 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 89.54 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 89.41 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 89.34 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 89.22 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 89.08 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 88.88 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 88.65 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 88.63 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 88.42 | |
| PLN02193 | 470 | nitrile-specifier protein | 88.25 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 87.96 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 87.59 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 87.49 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 87.22 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 86.22 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 86.21 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 86.0 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 85.91 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 85.86 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 85.53 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 85.4 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 84.89 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 84.63 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 84.58 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 84.42 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 83.73 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 83.46 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 82.88 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 82.78 | |
| PRK05560 | 805 | DNA gyrase subunit A; Validated | 82.7 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 81.94 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 81.76 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 81.62 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 81.34 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 81.2 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 80.47 |
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-90 Score=791.87 Aligned_cols=771 Identities=42% Similarity=0.616 Sum_probs=570.4
Q ss_pred EEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001472 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88 (1072)
Q Consensus 9 ~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~ 88 (1072)
+++.+|...|.|+..-..+ +.+++|+.|..+.||.+.....+..+.+|..+|.++.|++...+|++|+.+|+|++||++
T Consensus 22 ~~~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred hhhhhhhhhhceeeeeccc-eeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 5778899999999985544 899999999999999999998888999999999999999999999999999999999999
Q ss_pred CCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEE
Q 001472 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKV 168 (1072)
Q Consensus 89 tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~I 168 (1072)
.++.++++.+|...+..+.|+|.+.|++.|+.|+.+.+||++...|.+.+.+|...+.++.|+|+|+|++.|++|..++|
T Consensus 101 eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki 180 (825)
T KOG0267|consen 101 EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKI 180 (825)
T ss_pred hhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCc
Q 001472 169 WDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN 248 (1072)
Q Consensus 169 WDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~ 248 (1072)
||+..|+....|+.|.+.+.++.|+|...+++.|+.|+++++||+++++.+........+|.+..|+++|..+++|....
T Consensus 181 ~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 181 WDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999987665
Q ss_pred EEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccc
Q 001472 249 LKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSL 328 (1072)
Q Consensus 249 I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lL 328 (1072)
+..-... ...+...-..|.+.. ++ +-..-.|... ...... .....--+|+-+-
T Consensus 261 l~~~~~a-~ah~~~~~~~~Ep~~-----~~--------~~vqs~~~~e----k~v~v~-----~d~~~ln~~~s~~---- 313 (825)
T KOG0267|consen 261 LSESRTA-SAHVRKTLARWEPEM-----DG--------AVVQSNSHKE----KVVAVG-----RDPQDLNAFSSKV---- 313 (825)
T ss_pred hhhhhcc-cceeecccccccccc-----cc--------ceeeecCCcc----cccccc-----cCccccccccccc----
Confidence 4431000 000000011111110 00 0011112111 001000 0000000111100
Q ss_pred eEEEEEeccCcceEEeecCCcccceEEEeecCCCCccceeeeecCCCCCCcCCCCChhhhhhhccccCCCCCCCCCcccc
Q 001472 329 EKVGIIGRSTSGFRSTSPDYETKDIKTIYVDSTGGKPVASQKIGPLNSPKVVPPLDSEEISDLQTEKQNPAIGVPELSNG 408 (1072)
Q Consensus 329 a~VlaiG~stG~~r~ivpD~et~eI~~i~iDs~gGepv~~~~~sP~~s~k~~~~~~~~~l~~~~s~k~s~~~~~~~~~~~ 408 (1072)
..+ ...+...-.+.... ++ ++..-.|+
T Consensus 314 --------~~~----kl~~~~~~p~l~~t--------------~~-----------------l~rl~~S~---------- 340 (825)
T KOG0267|consen 314 --------NLS----KLEDSTYVPLLKET--------------KS-----------------LGRLSVSY---------- 340 (825)
T ss_pred --------ccc----ccccccccceeccc--------------cc-----------------hhcccccc----------
Confidence 000 00110000000000 00 00000000
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCccccccCCCCCcCcccccCCCCCchhhhhhhhcccccccccccCC-CCcC
Q 001472 409 QALDKSFIVPSIVPQESPAGKDSSFSAGESITFSRTKPGMLLRPAHVQKPSNSKYDAERLSTAAESESLNSKKSD-LDSA 487 (1072)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 487 (1072)
+.|.+ ..++++| |-| |..++..++. ++. +.+.. +.+.
T Consensus 341 -------------q~dep-------------------~~~~~k~-~~~--s~t~~~s~~~--~~~-----s~P~~r~~s~ 378 (825)
T KOG0267|consen 341 -------------QTDEP-------------------LDKSTKP-HRR--SSTSQNSDRS--EVE-----SKPLTRESSN 378 (825)
T ss_pred -------------ccCCC-------------------cccCCCC-ccc--cccccccccc--ccc-----cCccccccCC
Confidence 00000 1112222 222 1211111110 000 00000 0111
Q ss_pred cCCCcccccccCcccccccccccccccccccccccccCCCCCCCCcCCCCCCCCCCcCcceeEeeceeeecCCcchhhhH
Q 001472 488 VDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQKPPKQEDGDKSRDCSKITNSVKFVNGVAVVPGRTRSLVER 567 (1072)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (1072)
..|...++ ..+.+|++ +..++|....+.+++|.|-|| ..+++|+..++
T Consensus 379 ~~~di~~~-----s~~lss~e-------------------------~~~~~P~r~s~tn~~k~~sgv--Ss~~~rs~ts~ 426 (825)
T KOG0267|consen 379 LSPDIPKE-----SRTLSSTE-------------------------SNSEYPHRVSPTNPVKIVSGV--SSSVTRSPTSP 426 (825)
T ss_pred CCcccccc-----cccccccc-------------------------cCCCCCCcccccCcccccccc--ccccccCCCCC
Confidence 11211111 12222222 445788899999999999998 99999999999
Q ss_pred hhhhccccccchhcccccccccccccccccccCCCccccCCCcccccccccccccCCccccccccccccccccCCCCCCC
Q 001472 568 FERREKVNSNEDLAANVIPQTRLSRNEDQAADVTPQTTLSSNEDHVANVTSQTRLNGNEYQAATAPQQTRLSSNIDPVAN 647 (1072)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1072)
+++.|+..+.+-. ... ++-+|+ ++ + ..+|....+|+++....+.+ +.| +.
T Consensus 427 ~~~~k~n~ka~~~-~~e-------------~~~~~v--------~~-~-~~p~~~q~~Esp~~~~~~ar-----ttP-~s 476 (825)
T KOG0267|consen 427 VNPGKANPKAEIA-SVE-------------QDNNPV--------IQ-D-PLPTIEQATESPVPSTRIAR-----TTP-AS 476 (825)
T ss_pred CCccccCcccccc-ccc-------------cccccc--------cC-C-CcccccccccCccccccccc-----cCC-cc
Confidence 9999976444311 111 111121 10 1 23455666888886664443 447 99
Q ss_pred ccCccCCCCCccccccCCCCC--CCCCCcccccccccccCCCCCcccceecCcccccCCCccccccCCCCCcCCCCcccc
Q 001472 648 VTPQTLPSGNEDQAANVTPQT--RPSSNEDQTANVIRQTRPSSNEDQAVIVNPQTRRHSNEDQASNIAPYTRHDRNEDRA 725 (1072)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1072)
++|..|++ .+++.++++|.+ +|+ |+|+.++||+++|+.-- .++..| .. .+
T Consensus 477 ~~P~~~~~-r~~~rs~~~~~~st~~~-------------rtssspvmpv~lp~~s~-------~ty~~~------~v-~a 528 (825)
T KOG0267|consen 477 VQPIALNS-RSNSRSDPPPPTSTVPE-------------RTSSSPVMPVILPQASM-------STYPEP------PV-GA 528 (825)
T ss_pred cccccccc-cccCCCCCCCccccccc-------------ccccCCccccccCCCcc-------cccCCC------Cc-cc
Confidence 99999999 588888888775 555 55666799999954321 111111 00 00
Q ss_pred ccccCccccccccccccccccccCCCCccccccCCCcccccCccccccCCCCcceeecccccccCCCcchhccccccccc
Q 001472 726 TNITPQSKISRNQDQATNITSHMGLNSNENRATNIPSRSRLNSREDQSTNTPSQTIVNGAENKATKTPTQMRLKSSENQV 805 (1072)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1072)
...++++.++++ ++..||.
T Consensus 529 ------------------------------------------------------------~~~a~~s~~r~~-~~~~~~a 547 (825)
T KOG0267|consen 529 ------------------------------------------------------------SSTARTSSARIL-PVTFNQA 547 (825)
T ss_pred ------------------------------------------------------------cCcccccccccc-ccccccc
Confidence 011111222221 2333333
Q ss_pred cCCC--------cccccCcccccccccccccccccccccccccccccccccCccccccccceeecccCCcccc--ccccC
Q 001472 806 TSTP--------PRARLNSSIEGQATNIPIRRRFNRNVDQTTNVTRHRRSISNTDQATSTTAHVAVKNNDDIA--TVITP 875 (1072)
Q Consensus 806 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 875 (1072)
.|++ .++|+|+++++.|++++++.++..+++++.+ |||+++ +++.|||++.|++.+|..+++ ++.+|
T Consensus 548 ~~~~~~~~~~~l~r~r~~~pa~~~~tk~~~~~~~t~~~s~ias--r~r~s~-t~~~~tPa~~~~~~~mt~~et~~t~~~~ 624 (825)
T KOG0267|consen 548 NNISSEEAPVTLRRQRRNSPARVMPTKLNQSVNMTSDTSHIAS--RHRVSP-TQMLATPAVIDQVGDMTADETRPTNMQP 624 (825)
T ss_pred ccccCcCCccccccccCCCcccccccccchhhcccccccchhh--hhccCc-cccccccceecccccccccccccccccc
Confidence 3332 1367889999999999999999999999999 999998 999999999999999977777 99999
Q ss_pred cccccccccCCCCCCCCcccCCCCCCCChhHHHHHHHHhHHHHHHHHHHhhhhhHHHHhhhccCChhHHHHHHHhCCCCc
Q 001472 876 HVTALSYERTSTPKGEPQISGRDTPVANEGEAVESLMETHDIFISTLRSRLTKLQVVRHFWERNDIKGGINALRKLPDHS 955 (1072)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~l~~r~~~l~~~~~~w~~~~~~~~i~~~~~~~d~~ 955 (1072)
..+++ .+ +||+++++ |+||+++||.+|++|++.|++||+|||+|||||+++||||+|.++.||.|++
T Consensus 625 q~~n~------~~-ee~~~s~~------eedI~e~im~~Hde~lstlqSRl~kLqiVR~~Wer~DiK~sI~s~~kl~D~s 691 (825)
T KOG0267|consen 625 QRDNL------VQ-EEPIISDR------EEDIVEDIMGTHNEFLSTLQSRLTKLQIVRHFWERSDIKGSIGSLRKLADNS 691 (825)
T ss_pred ccccc------cc-cccccCcc------hhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhh
Confidence 98888 66 88888775 5679999999999999999999999999999999999999999999999999
Q ss_pred --hhHHHHhhhhchhhhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhhhhhcccCCCCCcccCchhHHHhhH
Q 001472 956 --ADVMSVLMEKMEILNLDLFLCLLPMLMGLLDSKMERHASISLEMLLKLVVVFGPMIHSTLSAPPAVGVDLHAEQRREC 1033 (1072)
Q Consensus 956 --~dv~~~l~~~~~~~~l~~c~~~lp~~~~ll~s~~e~~~~~~l~~l~~~~~~f~~~i~~~~~~~~~vgvd~~~e~r~~~ 1033 (1072)
||||+||++|++||+||+|+.|||+|++||.|+||+|+.|+|+||++||+.||++|+++++||.+|||||+||||.++
T Consensus 692 V~ADvL~Iltek~eiLtLDl~t~l~P~lt~LLgS~~e~~v~vsld~Llklv~~fgt~I~stlsAp~~VGVDi~aeer~~~ 771 (825)
T KOG0267|consen 692 VQADVLNILTEKIEILTLDLCTQLLPVLTALLGSKTERPVNVSLDMLLKLVAVFGTVIYSTLSAPRSVGVDIHAEERKER 771 (825)
T ss_pred HHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHHHHhhhhhhhhhhCCcccccccchHHHHhh
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhhHHHHHhhh
Q 001472 1034 CNRCFMQLQKIQKILPILERRGGLLAKCAHELNLVL 1069 (1072)
Q Consensus 1034 c~~c~~~l~~i~~~~~~l~~~~g~~~~~a~e~~~~l 1069 (1072)
|..||.+|.||...|+.+++..|...++.+++|.+.
T Consensus 772 ~~lc~~~l~kl~~~~~s~s~~s~s~~~~~~s~~~~~ 807 (825)
T KOG0267|consen 772 YSLCFVELPKLFCGLASLSKNSSSFIKKRRSLNKKG 807 (825)
T ss_pred hhhhhhhcchhhccccccccccccchhhhhhhcccc
Confidence 999999999999999999999999999999999764
|
|
| >PF13925 Katanin_con80: con80 domain of Katanin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=361.79 Aligned_cols=159 Identities=53% Similarity=0.770 Sum_probs=156.9
Q ss_pred HHhHHHHHHHHHHhhhhhHHHHhhhccCChhHHHHHHHhCCCCc--hhHHHHhh--hhchhhhHHHHHHHHHHHHhhhhc
Q 001472 912 METHDIFISTLRSRLTKLQVVRHFWERNDIKGGINALRKLPDHS--ADVMSVLM--EKMEILNLDLFLCLLPMLMGLLDS 987 (1072)
Q Consensus 912 ~~~h~~~~~~l~~r~~~l~~~~~~w~~~~~~~~i~~~~~~~d~~--~dv~~~l~--~~~~~~~l~~c~~~lp~~~~ll~s 987 (1072)
|++|+.|+++|++|+++|++||+||+++|+|+||+++++|+|+| +|+|++|+ .|++.||||+|..+||+|+.||+|
T Consensus 1 ~~~H~~~~~vL~~R~~~L~~v~~~W~~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~S 80 (164)
T PF13925_consen 1 SKGHDTMISVLQSRLTNLQVVRTFWRRNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQS 80 (164)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999 99999999 999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhhhcccCC-CCCcccCchhHHHhhHHHHHHHHHHHHHHHHHHHHHhCCchhhhHHHHH
Q 001472 988 KMERHASISLEMLLKLVVVFGPMIHSTLSA-PPAVGVDLHAEQRRECCNRCFMQLQKIQKILPILERRGGLLAKCAHELN 1066 (1072)
Q Consensus 988 ~~e~~~~~~l~~l~~~~~~f~~~i~~~~~~-~~~vgvd~~~e~r~~~c~~c~~~l~~i~~~~~~l~~~~g~~~~~a~e~~ 1066 (1072)
|||+|+.+||++|+.|++.||++|++++++ ++++|||+.+|||++||..||.+|++|+.++..|++++|.+|+.||||+
T Consensus 81 k~E~~i~~aL~~L~~i~~~f~~~I~~~~~~~~~~~gVDl~~EeR~~kc~~c~~~L~~i~~~l~~l~~~~g~~g~~a~el~ 160 (164)
T PF13925_consen 81 KYESYISVALEMLRSILKKFGPVIRSNLSAPSPSIGVDLSAEERMEKCQECYQQLRKIVQILKSLARRSGEVGSLARELN 160 (164)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 999999999999999999999999999996 5799999999999999999999999999999999999999999999999
Q ss_pred hhhc
Q 001472 1067 LVLQ 1070 (1072)
Q Consensus 1067 ~~lq 1070 (1072)
+.||
T Consensus 161 ~~l~ 164 (164)
T PF13925_consen 161 LELQ 164 (164)
T ss_pred HhcC
Confidence 9998
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=362.66 Aligned_cols=312 Identities=25% Similarity=0.404 Sum_probs=283.2
Q ss_pred EEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001472 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88 (1072)
Q Consensus 9 ~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~ 88 (1072)
..+.||.++|.|+.|+|+| ..|++|+.|.++++||+.+..+.++.++|...|.|++|+|||+.|++|+.||.|++||..
T Consensus 109 sS~~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred cccCCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 4688999999999999998 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCee-EEEEeCCCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEec
Q 001472 89 ESKM-VRTLTGHKSNCTAVEFHP-----FGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF 162 (1072)
Q Consensus 89 tgk~-i~tl~~h~~~VtsLafSP-----dg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~ 162 (1072)
+|++ ...+.+|...|++++|.| ..++|++++.||.|+|||+..+.++..+.+|..+|+|+.|--+| +|++|+.
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~ 266 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQ 266 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCC
Confidence 8875 467899999999999976 46799999999999999999999999999999999999998665 8999999
Q ss_pred CCeEEEEECCCCceEEEeeecCCceEEEEEc-----------CCCc-------------------------EEEEEECCC
Q 001472 163 DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFH-----------PLEF-------------------------LLATGSADR 206 (1072)
Q Consensus 163 DGsI~IWDl~tgk~i~~~~~h~g~ItsLafS-----------Pdg~-------------------------lLaTgS~DG 206 (1072)
|++|++|+...|.+...+++|...|+.++++ |.++ .|++|+.|.
T Consensus 267 DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~ 346 (480)
T KOG0271|consen 267 DRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF 346 (480)
T ss_pred CceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc
Confidence 9999999999999999999999999999876 2233 499999999
Q ss_pred eEEEEECCC-CcEEEeeCCCCCCeEEEEEeCCCCEEEEE-ECCcEEEEEecCCeeecccccC-CCeeeeEEecCCCEEEE
Q 001472 207 TVKFWDLET-FELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDMG-WSTLGDLCINDGKLLGC 283 (1072)
Q Consensus 207 tIrIWDl~t-ge~i~~~~~h~~~VtsIafSPDG~~LasG-sdg~I~Vwd~~s~~~~~~l~~~-~s~i~~l~spDGk~LAs 283 (1072)
++.+|+... .+++..+.+|..-|..+.|+||+++++++ .|..+++|+-++++....+..+ ..+....|+.|.++|++
T Consensus 347 tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS 426 (480)
T KOG0271|consen 347 TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS 426 (480)
T ss_pred eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE
Confidence 999999765 45788899999999999999999999997 5778999999999999988855 45567778899999999
Q ss_pred EEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCc
Q 001472 284 SFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSH 326 (1072)
Q Consensus 284 gs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~ 326 (1072)
|+.|.++++|++..+++..-. .+|.+.|.++.|+|||..
T Consensus 427 ~SkDsTLKvw~V~tkKl~~DL----pGh~DEVf~vDwspDG~r 465 (480)
T KOG0271|consen 427 GSKDSTLKVWDVRTKKLKQDL----PGHADEVFAVDWSPDGQR 465 (480)
T ss_pred cCCCceEEEEEeeeeeecccC----CCCCceEEEEEecCCCce
Confidence 999999999999877765543 579999999999999993
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=333.66 Aligned_cols=282 Identities=26% Similarity=0.516 Sum_probs=266.1
Q ss_pred ecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCC--CCEEEEEEcCCeEEEEEcCC
Q 001472 12 VAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSA--EVLVLAGASTGVIKLWDLEE 89 (1072)
Q Consensus 12 ~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPd--G~~LatGS~DGsI~IWDl~t 89 (1072)
.|-+.+|..+.|+.++ ..|+||+.+|.+++|+..+...+..+.+|...|.++.|+|. +..|++|+.||++++|++.+
T Consensus 172 ~gd~rPis~~~fS~ds-~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDS-KHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred ccCCCcceeeEeecCC-CeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 3667899999999999 89999999999999999999999999999999999999996 67999999999999999999
Q ss_pred CeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEE
Q 001472 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW 169 (1072)
Q Consensus 90 gk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IW 169 (1072)
..++..+.+|...|..++|+|+|++|++++.|.+-++||+.++..+....+|..+|.+++|.+||.++++|+.|..-+||
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW 330 (459)
T ss_pred CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeC-CCCEEEEE-ECC
Q 001472 170 DLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHP-DGRTLFSG-FDD 247 (1072)
Q Consensus 170 Dl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSP-DG~~LasG-sdg 247 (1072)
|+++|.++..+.+|..+|.+++|+|+|..|++|+.|++++|||++....+..+..|..-|..+.|+| .|.+|+++ .|+
T Consensus 331 DlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~ 410 (459)
T KOG0272|consen 331 DLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDN 410 (459)
T ss_pred ecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 68888875 677
Q ss_pred cEEEEEecCCeeecccccCCC-eeeeEEecCCCEEEEEEcCCeEEEEE
Q 001472 248 NLKVYSWEPVICHDSVDMGWS-TLGDLCINDGKLLGCSFYRNSVGIWV 294 (1072)
Q Consensus 248 ~I~Vwd~~s~~~~~~l~~~~s-~i~~l~spDGk~LAsgs~DGsVrIWD 294 (1072)
.++||.-.+..+.+.+..+.. +++.-.++|+.++++++.|.++++|.
T Consensus 411 t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 411 TVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 899999999999988876654 55666779999999999999999994
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=325.08 Aligned_cols=289 Identities=23% Similarity=0.383 Sum_probs=262.1
Q ss_pred cCceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceE-EEeeCCCCCeEEEEEcC-----CCCEEEEEE
Q 001472 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTAL-MSLCGLSSPVDSVAFDS-----AEVLVLAGA 77 (1072)
Q Consensus 4 tGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l-~sl~~hs~~ItsLafSP-----dG~~LatGS 77 (1072)
+..++.+.++|...|.|++|+||| +.||+|+.||.|++||..+++.+ ..+.+|...|++++|.| ..++|++++
T Consensus 146 TeTp~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~s 224 (480)
T KOG0271|consen 146 TETPLFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSS 224 (480)
T ss_pred CCCcceeecCCccEEEEEEECCCc-chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceeccc
Confidence 445678899999999999999999 88999999999999999887665 56899999999999975 677999999
Q ss_pred cCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEc------
Q 001472 78 STGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFT------ 151 (1072)
Q Consensus 78 ~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafS------ 151 (1072)
.||.|+|||+..+.++..+.+|..+|+|++|--+ .+|++|+.|++|++|+...|.+.+.+++|...|+.++++
T Consensus 225 kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LR 303 (480)
T KOG0271|consen 225 KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLR 303 (480)
T ss_pred CCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhh
Confidence 9999999999999999999999999999999743 489999999999999999999999999999999999887
Q ss_pred -----CCCC-------------------------EEEEEecCCeEEEEECCCC-ceEEEeeecCCceEEEEEcCCCcEEE
Q 001472 152 -----PDGR-------------------------WVVSGGFDNVVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPLEFLLA 200 (1072)
Q Consensus 152 -----PDG~-------------------------~LaTGS~DGsI~IWDl~tg-k~i~~~~~h~g~ItsLafSPdg~lLa 200 (1072)
|.++ .|++|+.|+++.+|+.... +++..+.+|..-|..+.|+||+.+++
T Consensus 304 tgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IA 383 (480)
T KOG0271|consen 304 TGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIA 383 (480)
T ss_pred ccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEE
Confidence 2233 4999999999999997654 47778889999999999999999999
Q ss_pred EEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEE-CCcEEEEEecCCeeecccc-cCCCeeeeEEecCC
Q 001472 201 TGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVD-MGWSTLGDLCINDG 278 (1072)
Q Consensus 201 TgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGs-dg~I~Vwd~~s~~~~~~l~-~~~s~i~~l~spDG 278 (1072)
+++.|..|++||-++|+.+..+.+|...|+.++|+.|.++|++|+ |.++++|++.+.+....+. +...++..-|+|||
T Consensus 384 SaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG 463 (480)
T KOG0271|consen 384 SASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDG 463 (480)
T ss_pred EeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCC
Confidence 999999999999999999999999999999999999999999986 4569999999998887777 44566777788999
Q ss_pred CEEEEEEcCCeEEEEE
Q 001472 279 KLLGCSFYRNSVGIWV 294 (1072)
Q Consensus 279 k~LAsgs~DGsVrIWD 294 (1072)
+.+++|+.|..+++|.
T Consensus 464 ~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 464 QRVASGGKDKVLRLWR 479 (480)
T ss_pred ceeecCCCceEEEeec
Confidence 9999999999999994
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=289.87 Aligned_cols=286 Identities=33% Similarity=0.611 Sum_probs=259.4
Q ss_pred EEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001472 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87 (1072)
Q Consensus 8 I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl 87 (1072)
++.|.+|.+.|.+++|+|++ .+|++++.||.|.+|++.++.....+..|...+..+.|++++++|++++.+|.|.+||+
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred chHhcccCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 45678999999999999998 78999999999999999988888888899999999999999999999999999999999
Q ss_pred CCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEE
Q 001472 88 EESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVK 167 (1072)
Q Consensus 88 ~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~ 167 (1072)
.+++.+..+..|...+.++.|+++++++++++.+|.|.+||+.+++....+..|...+.+++|+|++.++++++.+|.|.
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred CcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 99888888888998999999999988888888899999999998888888888888999999999999888888899999
Q ss_pred EEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEE-C
Q 001472 168 VWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-D 246 (1072)
Q Consensus 168 IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGs-d 246 (1072)
+||+.+++.+..+..|...+.+++|+|++..+++++.||.|++||+..++.+..+..+...+.++.|++++.+++++. +
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCC
Confidence 999999999888988888999999999999999999999999999999888888878888999999999999999887 8
Q ss_pred CcEEEEEecCCeeecccccCC-CeeeeEEecCCCEEEEEEcCCeEEEEE
Q 001472 247 DNLKVYSWEPVICHDSVDMGW-STLGDLCINDGKLLGCSFYRNSVGIWV 294 (1072)
Q Consensus 247 g~I~Vwd~~s~~~~~~l~~~~-s~i~~l~spDGk~LAsgs~DGsVrIWD 294 (1072)
+.+++|++........+..+. .+....+.+++.+|++++.||.|++|+
T Consensus 241 ~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 889999998777666555433 455566778899999999999999995
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=299.24 Aligned_cols=291 Identities=23% Similarity=0.404 Sum_probs=259.9
Q ss_pred cCceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECC-----CCceEEEeeCCCCCeEEEEEcCCCCEEEEEEc
Q 001472 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIG-----KPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS 78 (1072)
Q Consensus 4 tGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~-----t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~ 78 (1072)
.-.+...|.+|.+.|+.++..+.+..+|++++.|..+.+|++. .|.....+.+|...|..+..+++|++.++++.
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc
Confidence 3445567999999999999999988999999999999999873 46678889999999999999999999999999
Q ss_pred CCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC--CCCeEEEEEcCC--C
Q 001472 79 TGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGH--TRGINTIRFTPD--G 154 (1072)
Q Consensus 79 DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h--~~~VtsLafSPD--G 154 (1072)
|+.+++||+.+++..+.|.+|...|.+++|++|.+.+++|+.|.+|.+|++... +..++..+ ...|.|+.|+|+ .
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~ 162 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESN 162 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCC
Confidence 999999999999999999999999999999999999999999999999998654 44444333 678999999997 6
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEE
Q 001472 155 RWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITF 234 (1072)
Q Consensus 155 ~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIaf 234 (1072)
.+|++++.|++|++||+++.+....+.+|.+.++.++++|||.++++|+.||.+.+||++.++.+..+. +...|.+++|
T Consensus 163 p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~f 241 (315)
T KOG0279|consen 163 PIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCF 241 (315)
T ss_pred cEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEe
Confidence 799999999999999999999999999999999999999999999999999999999999999977765 4578999999
Q ss_pred eCCCCEEEEEECCcEEEEEecCCeeecccccC----------CCeeeeEEecCCCEEEEEEcCCeEEEEEcC
Q 001472 235 HPDGRTLFSGFDDNLKVYSWEPVICHDSVDMG----------WSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 235 SPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~----------~s~i~~l~spDGk~LAsgs~DGsVrIWDld 296 (1072)
+|+.-+|+.+.+..|+||++++..++..+... -..+...++.||..|++|..|+.|++|.+.
T Consensus 242 spnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 242 SPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 99999999999999999999998877655322 123456677899999999999999999763
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=298.19 Aligned_cols=285 Identities=23% Similarity=0.400 Sum_probs=259.2
Q ss_pred EEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001472 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87 (1072)
Q Consensus 8 I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl 87 (1072)
-+.|+||.+.|.++.|++|. ++|++++.||.+.|||.-+..+.+.+......|..++|+|.|+++++|+-|+...||++
T Consensus 48 rr~LkGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred EEEecccccceeeeEecCCc-CeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 36799999999999999998 89999999999999999999999999988999999999999999999999999999999
Q ss_pred CCC------eeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEE
Q 001472 88 EES------KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP-DGRWVVSG 160 (1072)
Q Consensus 88 ~tg------k~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSP-DG~~LaTG 160 (1072)
.+. ...+.+.+|.+.+.|+.|.. ...|++++.|.+..+||+++++.+..|.+|.+.|.++.++| +++.|++|
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg 205 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSG 205 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEec
Confidence 754 45677899999999999997 45689999999999999999999999999999999999999 99999999
Q ss_pred ecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCC--CCCCeEEEEEeCCC
Q 001472 161 GFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP--EVTGVHAITFHPDG 238 (1072)
Q Consensus 161 S~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~--h~~~VtsIafSPDG 238 (1072)
+-|+..++||++.+..++.|.+|...|.+++|.|+|.-+++|+.|++.++||++....+..+.. ...+|++++|+..|
T Consensus 206 ~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG 285 (343)
T KOG0286|consen 206 GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG 285 (343)
T ss_pred ccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccc
Confidence 9999999999999999999999999999999999999999999999999999999888776653 34689999999999
Q ss_pred CEEEEEE-CCcEEEEEecCCeeecccccCCCee-eeEEecCCCEEEEEEcCCeEEEEE
Q 001472 239 RTLFSGF-DDNLKVYSWEPVICHDSVDMGWSTL-GDLCINDGKLLGCSFYRNSVGIWV 294 (1072)
Q Consensus 239 ~~LasGs-dg~I~Vwd~~s~~~~~~l~~~~s~i-~~l~spDGk~LAsgs~DGsVrIWD 294 (1072)
++|++|. |.++.+||.-.......+..+..-+ +.-.+|||-.+++|++|..++||.
T Consensus 286 RlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999975 4569999987777777666655444 445569999999999999999993
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=318.49 Aligned_cols=250 Identities=28% Similarity=0.494 Sum_probs=240.0
Q ss_pred cCceEEEEecCCCCeEEEEEecC-CCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 001472 4 RGYKLQEFVAHSANVNCISIGKK-ACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVI 82 (1072)
Q Consensus 4 tGk~I~~L~gHsg~Vt~IafSPd-g~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI 82 (1072)
....++.|.||.+.|.++.|+|. ...-+|+|+.||++++|++.+...+..+.+|...|..++|+|+|++|++++.|.+-
T Consensus 206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tW 285 (459)
T KOG0272|consen 206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTW 285 (459)
T ss_pred CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccch
Confidence 45778999999999999999998 35789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEec
Q 001472 83 KLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF 162 (1072)
Q Consensus 83 ~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~ 162 (1072)
++||+.++..+....+|...|.+++|++||..+++|+.|..-+|||+++|.++..+.+|..+|..+.|+|+|..|++|+.
T Consensus 286 RlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~ 365 (459)
T KOG0272|consen 286 RLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS 365 (459)
T ss_pred hhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC
Confidence 99999999988888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeeecCCceEEEEEcC-CCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEE
Q 001472 163 DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHP-LEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTL 241 (1072)
Q Consensus 163 DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSP-dg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~L 241 (1072)
|++++|||++..+.+..+.+|..-|+.++|+| .|.+|++++.|++++||...++.+++.+.+|.+.|.++.+++||.++
T Consensus 366 Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i 445 (459)
T KOG0272|consen 366 DNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAI 445 (459)
T ss_pred CCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceE
Confidence 99999999999999999999999999999999 68999999999999999999999999999999999999999999999
Q ss_pred EEE-ECCcEEEEE
Q 001472 242 FSG-FDDNLKVYS 253 (1072)
Q Consensus 242 asG-sdg~I~Vwd 253 (1072)
+++ .|.++++|.
T Consensus 446 ~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 446 ATSSFDRTIKLWR 458 (459)
T ss_pred EEeccCceeeecc
Confidence 985 577899984
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-30 Score=290.48 Aligned_cols=317 Identities=17% Similarity=0.319 Sum_probs=271.8
Q ss_pred EecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCC----ceEEEe------e----CCCCCeEEEEEcCCCCEEEEE
Q 001472 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP----TALMSL------C----GLSSPVDSVAFDSAEVLVLAG 76 (1072)
Q Consensus 11 L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~----~~l~sl------~----~hs~~ItsLafSPdG~~LatG 76 (1072)
+..|..+|.+.+|+|-...+|++|+.|-..++|++... .....+ . ..+..|++++|+.+|..|++|
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 33499999999999987558999999999999998531 110011 1 124679999999999999999
Q ss_pred EcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 001472 77 ASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW 156 (1072)
Q Consensus 77 S~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~ 156 (1072)
+.||.++||+. +|.++.++..|.++|.++.|+..|.||++++.||++.+||..++.....+..|..+...+.|-.+. .
T Consensus 254 ~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~-~ 331 (524)
T KOG0273|consen 254 SEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND-E 331 (524)
T ss_pred ecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc-e
Confidence 99999999996 577888899999999999999999999999999999999999999999998888877788997654 5
Q ss_pred EEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeC
Q 001472 157 VVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHP 236 (1072)
Q Consensus 157 LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSP 236 (1072)
|++++.||.|+++.+....++.++.+|.+.|.++.|+|.|.+|++++.|++++||..........+..|...|..+.|+|
T Consensus 332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp 411 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSP 411 (524)
T ss_pred EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC---------EEE-EEECCcEEEEEecCCeeeccc-ccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeec
Q 001472 237 DGR---------TLF-SGFDDNLKVYSWEPVICHDSV-DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGV 305 (1072)
Q Consensus 237 DG~---------~La-sGsdg~I~Vwd~~s~~~~~~l-~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v 305 (1072)
+|. .++ ++.++.+++||...+.+...+ .+...+....|+|+|+|+|+|+.||.|.||+...+.+..-
T Consensus 412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s-- 489 (524)
T KOG0273|consen 412 TGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS-- 489 (524)
T ss_pred CCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe--
Confidence 753 344 467888999999999998887 4555666778889999999999999999998876665443
Q ss_pred CCCCCCCCCeeEEEECCCCCccceEEEEEeccCc
Q 001472 306 GAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTS 339 (1072)
Q Consensus 306 ~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG 339 (1072)
....+.|..++|+.+|+ .+......|
T Consensus 490 ---~~~~~~Ifel~Wn~~G~-----kl~~~~sd~ 515 (524)
T KOG0273|consen 490 ---YQGTGGIFELCWNAAGD-----KLGACASDG 515 (524)
T ss_pred ---ecCCCeEEEEEEcCCCC-----EEEEEecCC
Confidence 24456799999999998 454555554
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-29 Score=261.97 Aligned_cols=281 Identities=28% Similarity=0.514 Sum_probs=243.2
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001472 52 MSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK 131 (1072)
Q Consensus 52 ~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrt 131 (1072)
..+.+|..+|.+++|+|++++|++++.+|.|.+|++.+++....+..|...+..+.|++++++|++++.+|.|++||+..
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 34668999999999999999999999999999999999888888888999999999999999999999999999999998
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEE
Q 001472 132 KGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFW 211 (1072)
Q Consensus 132 gk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIW 211 (1072)
++.+..+..|...+.++.|++++.++++++.+|.|.+||+.+++....+..|...+.+++|+|++.++++++.||.|++|
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 88888888888899999999998888888889999999999999988888899999999999999999988889999999
Q ss_pred ECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEE-CCcEEEEEecCCeeeccc-ccCCCeeeeEEecCCCEEEEEEcCCe
Q 001472 212 DLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSV-DMGWSTLGDLCINDGKLLGCSFYRNS 289 (1072)
Q Consensus 212 Dl~tge~i~~~~~h~~~VtsIafSPDG~~LasGs-dg~I~Vwd~~s~~~~~~l-~~~~s~i~~l~spDGk~LAsgs~DGs 289 (1072)
|+.+++.+..+..+...+.++.|++++..+++++ ++.+.+|++........+ ..........+.+++.++++++.+|.
T Consensus 163 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 242 (289)
T cd00200 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242 (289)
T ss_pred EccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc
Confidence 9999888888888888999999999998777764 778999999887776666 33335556667788888888888999
Q ss_pred EEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcce
Q 001472 290 VGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGF 341 (1072)
Q Consensus 290 VrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~ 341 (1072)
|++|++......... ..+...+.+++|+|+|. .++.+...|.+
T Consensus 243 i~i~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~-----~l~~~~~d~~i 285 (289)
T cd00200 243 IRVWDLRTGECVQTL----SGHTNSVTSLAWSPDGK-----RLASGSADGTI 285 (289)
T ss_pred EEEEEcCCceeEEEc----cccCCcEEEEEECCCCC-----EEEEecCCCeE
Confidence 999998754433332 36677899999999988 55566666533
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-29 Score=291.74 Aligned_cols=336 Identities=21% Similarity=0.374 Sum_probs=281.1
Q ss_pred eEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCce--EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001472 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTA--LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1072)
Q Consensus 7 ~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~--l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~I 84 (1072)
..+++.||...|.+|.|+.|. ++|++|+.|..++||++...+. ...+.+|..+|.++-|..+...+++.+.||.+.+
T Consensus 137 l~r~~~g~fddi~si~Ws~DS-r~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~ 215 (893)
T KOG0291|consen 137 LHRTYLGHFDDITSIDWSDDS-RLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFV 215 (893)
T ss_pred EeeeecCCccceeEEEeccCC-ceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEE
Confidence 456899999999999999998 9999999999999999976655 6667899999999999999999999999999999
Q ss_pred EEcCC-----------------------Cee-----E-------------------------------------------
Q 001472 85 WDLEE-----------------------SKM-----V------------------------------------------- 93 (1072)
Q Consensus 85 WDl~t-----------------------gk~-----i------------------------------------------- 93 (1072)
|.... ++. .
T Consensus 216 W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP 295 (893)
T KOG0291|consen 216 WTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELP 295 (893)
T ss_pred EEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecC
Confidence 97650 110 0
Q ss_pred -----EEEeCCCCCeEEEEEcCCCCEEEEEeCC-CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEE
Q 001472 94 -----RTLTGHKSNCTAVEFHPFGEFFASGCMD-TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVK 167 (1072)
Q Consensus 94 -----~tl~~h~~~VtsLafSPdg~~LaSgs~D-GsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~ 167 (1072)
+.+.-....|..+.|+..|++|+.||.. |.+.||++++...+...++|...+.+++++|||+++++|+.||.|+
T Consensus 296 ~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVK 375 (893)
T KOG0291|consen 296 DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVK 375 (893)
T ss_pred CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEE
Confidence 0001112345666677777778777664 7888888888888888889999999999999999999999999999
Q ss_pred EEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCC-CCCeEEEEEeCCCCEEEEEEC
Q 001472 168 VWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPE-VTGVHAITFHPDGRTLFSGFD 246 (1072)
Q Consensus 168 IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h-~~~VtsIafSPDG~~LasGsd 246 (1072)
|||..+|-++.+|..|...|+.++|+..|+.|++.+-||+|+.||+..+....++... .....+++..|.|..+++|.-
T Consensus 376 vWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 376 VWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQ 455 (893)
T ss_pred EEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeecc
Confidence 9999999999999999999999999999999999999999999999999888887654 345678999999999999977
Q ss_pred Cc--EEEEEecCCeeecccccCCCeeee-EEecCCCEEEEEEcCCeEEEEEcCCC--ceeeeecCCCCCCCCCeeEEEEC
Q 001472 247 DN--LKVYSWEPVICHDSVDMGWSTLGD-LCINDGKLLGCSFYRNSVGIWVADVS--HVEPYGVGAPEPDQSICTEVKFN 321 (1072)
Q Consensus 247 g~--I~Vwd~~s~~~~~~l~~~~s~i~~-l~spDGk~LAsgs~DGsVrIWDlds~--~l~~~~v~~~~~~~~~ItsVaFS 321 (1072)
+. |.||++++++....+..+..++.. .+.++|..|+++++|.+|++||+=.. ..+++. +...+..++|+
T Consensus 456 d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~------i~sdvl~vsfr 529 (893)
T KOG0291|consen 456 DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE------IRSDVLAVSFR 529 (893)
T ss_pred ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe------eccceeEEEEc
Confidence 65 999999999999999888777765 56689999999999999999998433 555554 46689999999
Q ss_pred CCCCccceEEEEEeccCcceEEeecCCcccceEE
Q 001472 322 PPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKT 355 (1072)
Q Consensus 322 PDGs~lLa~VlaiG~stG~~r~ivpD~et~eI~~ 355 (1072)
|||+ -+++.+..|-+.++-.. +.+++..
T Consensus 530 PdG~-----elaVaTldgqItf~d~~-~~~q~~~ 557 (893)
T KOG0291|consen 530 PDGK-----ELAVATLDGQITFFDIK-EAVQVGS 557 (893)
T ss_pred CCCC-----eEEEEEecceEEEEEhh-hceeecc
Confidence 9999 67777888877777655 4554444
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-30 Score=275.62 Aligned_cols=250 Identities=25% Similarity=0.475 Sum_probs=222.0
Q ss_pred ccCceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 001472 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVI 82 (1072)
Q Consensus 3 ktGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI 82 (1072)
+.|..++.|.||+..|..+..++|| ++.++++.|+.+++||+.+++....|.+|...|.+++|++|.+.|++|+.|.+|
T Consensus 51 ~~G~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTi 129 (315)
T KOG0279|consen 51 KYGVPVRRLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTI 129 (315)
T ss_pred ccCceeeeeeccceEecceEEccCC-ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCccee
Confidence 4688899999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCeeEEEEeCC-CCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 001472 83 KLWDLEESKMVRTLTGH-KSNCTAVEFHPF--GEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVS 159 (1072)
Q Consensus 83 ~IWDl~tgk~i~tl~~h-~~~VtsLafSPd--g~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaT 159 (1072)
.+|+............. .+.|.|++|+|+ ..+|++++.|+.|++||+++.+....+.+|.+.++.++++|||.++++
T Consensus 130 klwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcas 209 (315)
T KOG0279|consen 130 KLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCAS 209 (315)
T ss_pred eeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEec
Confidence 99998755444333332 788999999998 679999999999999999999999999999999999999999999999
Q ss_pred EecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCC---------CCeE
Q 001472 160 GGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEV---------TGVH 230 (1072)
Q Consensus 160 GS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~---------~~Vt 230 (1072)
|+.||.+.+||++.++.++.+. +...|.+++|+|+..+|+.+. +..|+|||+.++..+..+.... ....
T Consensus 210 Ggkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cl 287 (315)
T KOG0279|consen 210 GGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICL 287 (315)
T ss_pred CCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEE
Confidence 9999999999999999988877 788899999999887776655 4569999999988776654332 2356
Q ss_pred EEEEeCCCCEEEEE-ECCcEEEEEec
Q 001472 231 AITFHPDGRTLFSG-FDDNLKVYSWE 255 (1072)
Q Consensus 231 sIafSPDG~~LasG-sdg~I~Vwd~~ 255 (1072)
+++|++||..|++| +++.|++|.+.
T Consensus 288 slaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 288 SLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEcCCCcEEEeeecCCcEEEEEee
Confidence 88999999999998 56779999764
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-30 Score=288.52 Aligned_cols=278 Identities=23% Similarity=0.396 Sum_probs=258.7
Q ss_pred CCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEE
Q 001472 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRT 95 (1072)
Q Consensus 16 g~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~t 95 (1072)
..|+|++|+.+| .+||+|..||.++||+. .+..+.++..|.++|.++.|+..|.||++++.||++.+||..++...+.
T Consensus 236 kdVT~L~Wn~~G-~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 236 KDVTSLDWNNDG-TLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred CCcceEEecCCC-CeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 579999999999 89999999999999996 6777888999999999999999999999999999999999999999999
Q ss_pred EeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCc
Q 001472 96 LTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK 175 (1072)
Q Consensus 96 l~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk 175 (1072)
+.-|..+-.++.|-.+ ..|++++.||.|+++.+....++.++.+|.+.|.++.|.|.|.+|++++.|++++||......
T Consensus 314 f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred eeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence 9888888788999854 458888999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeecCCceEEEEEcCCC---------cEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEE-
Q 001472 176 LLHDFKFHEGHIRSIDFHPLE---------FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF- 245 (1072)
Q Consensus 176 ~i~~~~~h~g~ItsLafSPdg---------~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGs- 245 (1072)
....+.+|...|..+.|+|.| ..+++++.|++|++||+..+.++..+..|..+|++++|+|+|+|+++|+
T Consensus 393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~ 472 (524)
T KOG0273|consen 393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL 472 (524)
T ss_pred chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCC
Confidence 999999999999999999964 4789999999999999999999999999999999999999999999985
Q ss_pred CCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcC
Q 001472 246 DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 246 dg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDld 296 (1072)
++.+.+|+...+...+.+.....+....|..+|.+|..+..||.+++.|+.
T Consensus 473 dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 473 DGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 677999999999999988888788888888899999999999999998763
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.7e-31 Score=285.31 Aligned_cols=288 Identities=22% Similarity=0.454 Sum_probs=260.0
Q ss_pred eEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 001472 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWD 86 (1072)
Q Consensus 7 ~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWD 86 (1072)
..+.+.||.+.|.|+++.|.+ .+|++|+.|++|+|||+.+++...++.+|...|..+++|+...||++++.|+.|+.||
T Consensus 143 l~rVi~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred ehhhhhhccceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 345688999999999999986 8999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeE
Q 001472 87 LEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVV 166 (1072)
Q Consensus 87 l~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI 166 (1072)
++..+.++.+.+|-..|+|++.+|.-+.|++|+.|..+++||+++...++.+.+|..+|..+.+.|-.-.+++|+.|++|
T Consensus 222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tv 301 (460)
T KOG0285|consen 222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTV 301 (460)
T ss_pred chhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999977789999999999
Q ss_pred EEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEEC
Q 001472 167 KVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFD 246 (1072)
Q Consensus 167 ~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsd 246 (1072)
++||+..|+....+..|...+.+++.+|....+++++.| .|+-|++..|..+..+.+|..-|.+++...||-++..|..
T Consensus 302 rlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dn 380 (460)
T KOG0285|consen 302 RLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDN 380 (460)
T ss_pred EEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEEcCCc
Confidence 999999999999999999999999999999999999886 6999999999999999999999999999998766655666
Q ss_pred CcEEEEEecCCeeeccc---------ccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcC
Q 001472 247 DNLKVYSWEPVICHDSV---------DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 247 g~I~Vwd~~s~~~~~~l---------~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDld 296 (1072)
+.+.+|||+.+...+.. .....+....|-..|..|++|..|.+|++|.-+
T Consensus 381 g~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 381 GSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred eEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 67999999987654432 112233344444578899999999999999765
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=269.55 Aligned_cols=283 Identities=18% Similarity=0.324 Sum_probs=251.5
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001472 51 LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130 (1072)
Q Consensus 51 l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlr 130 (1072)
...+++|.+.|+++.|++|.++|++++.||.+.|||.-+...++.+.-....|..++|+|.|+++|+|+.|....||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 46789999999999999999999999999999999999888888888888999999999999999999999999999998
Q ss_pred CC------eEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcC-CCcEEEEEE
Q 001472 131 KK------GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHP-LEFLLATGS 203 (1072)
Q Consensus 131 tg------k~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSP-dg~lLaTgS 203 (1072)
+. ...+.+.+|.+.+.|+.|..|+ .|++++.|.+..+||+++++.+..|.+|.+.|.+++++| +++.+++|+
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~ 206 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG 206 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence 54 3456788999999999999865 589999999999999999999999999999999999999 999999999
Q ss_pred CCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECC-cEEEEEecCCeeeccccc---CCCeeeeEEecCCC
Q 001472 204 ADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD-NLKVYSWEPVICHDSVDM---GWSTLGDLCINDGK 279 (1072)
Q Consensus 204 ~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg-~I~Vwd~~s~~~~~~l~~---~~s~i~~l~spDGk 279 (1072)
-|+..++||++.+.++..|.+|...|.++.|.|+|.-+++|+|+ ..++||++.......+.. ...+....|+..|+
T Consensus 207 cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR 286 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR 286 (343)
T ss_pred cccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccccc
Confidence 99999999999999999999999999999999999999999876 599999998766655543 23556777888999
Q ss_pred EEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcceEE
Q 001472 280 LLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRS 343 (1072)
Q Consensus 280 ~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ 343 (1072)
+|++|..|..+.+||.-.+...... .+|...|.++..+|||. .++.|.-..++++
T Consensus 287 lLfagy~d~~c~vWDtlk~e~vg~L----~GHeNRvScl~~s~DG~-----av~TgSWDs~lri 341 (343)
T KOG0286|consen 287 LLFAGYDDFTCNVWDTLKGERVGVL----AGHENRVSCLGVSPDGM-----AVATGSWDSTLRI 341 (343)
T ss_pred EEEeeecCCceeEeeccccceEEEe----eccCCeeEEEEECCCCc-----EEEecchhHheee
Confidence 9999999999999987544444333 68999999999999999 7777776654444
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=281.85 Aligned_cols=342 Identities=17% Similarity=0.236 Sum_probs=287.5
Q ss_pred CCccCceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCC
Q 001472 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTG 80 (1072)
Q Consensus 1 LaktGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DG 80 (1072)
|..+|..+-++.||...|++++|-|..+..+++|+.|++|.+|+-.-.+...++..|..-|.|+.|+|||.++++.+.||
T Consensus 133 ~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg 212 (603)
T KOG0318|consen 133 LWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG 212 (603)
T ss_pred EecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCc
Confidence 45678889999999999999999999999999999999999999766666777889999999999999999999999999
Q ss_pred eEEEEEcCCCeeEEEEe---CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC---CCeEEEEEcCCC
Q 001472 81 VIKLWDLEESKMVRTLT---GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHT---RGINTIRFTPDG 154 (1072)
Q Consensus 81 sI~IWDl~tgk~i~tl~---~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~---~~VtsLafSPDG 154 (1072)
.|.+||-.+|+.+..+. +|.+.|.++.|+||+..|++++.|.+++|||+.+.+++.++.... .....+.|. +
T Consensus 213 ki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--k 290 (603)
T KOG0318|consen 213 KIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--K 290 (603)
T ss_pred cEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--C
Confidence 99999999999999998 899999999999999999999999999999999999988886332 234455665 5
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEee-CCCCCCeEEEE
Q 001472 155 RWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGST-RPEVTGVHAIT 233 (1072)
Q Consensus 155 ~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~-~~h~~~VtsIa 233 (1072)
..|++.+.+|.|.+++...+..+..+.+|...|+++..++++.+|++|+.||.|.-|+..++..-... ..|...|.+++
T Consensus 291 d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~ 370 (603)
T KOG0318|consen 291 DHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMA 370 (603)
T ss_pred CeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEe
Confidence 57999999999999999999999999999999999999999999999999999999999988765443 66788899999
Q ss_pred EeCCCCEEEEEECCcEEEEEecCCee----------------------------------------ecccccCCCeeeeE
Q 001472 234 FHPDGRTLFSGFDDNLKVYSWEPVIC----------------------------------------HDSVDMGWSTLGDL 273 (1072)
Q Consensus 234 fSPDG~~LasGsdg~I~Vwd~~s~~~----------------------------------------~~~l~~~~s~i~~l 273 (1072)
-+..+.++.+|.|+.+++.++....+ ....+..+.....+
T Consensus 371 ~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vA 450 (603)
T KOG0318|consen 371 ASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVA 450 (603)
T ss_pred ecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEE
Confidence 98888888889999988887632111 01112334455666
Q ss_pred EecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcceEEeecCCcccce
Q 001472 274 CINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDI 353 (1072)
Q Consensus 274 ~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD~et~eI 353 (1072)
.++++..+++|+.||+|+||.+....+...... ..|...+++++|||||. .++.+...+ ..++.|.++++.
T Consensus 451 v~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~--~~h~a~iT~vaySpd~~-----yla~~Da~r--kvv~yd~~s~~~ 521 (603)
T KOG0318|consen 451 VSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL--LEHRAAITDVAYSPDGA-----YLAAGDASR--KVVLYDVASREV 521 (603)
T ss_pred EcCCCCEEEEecccceEEEEEecCCcccceeee--ecccCCceEEEECCCCc-----EEEEeccCC--cEEEEEcccCce
Confidence 778999999999999999999987665444322 57899999999999999 566666655 344455555555
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=291.06 Aligned_cols=320 Identities=21% Similarity=0.374 Sum_probs=280.0
Q ss_pred CCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcC-CeEEEEEcCCCeeE
Q 001472 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAST-GVIKLWDLEESKMV 93 (1072)
Q Consensus 15 sg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~D-GsI~IWDl~tgk~i 93 (1072)
...|+|.+|++.. ++|++|-..|...||++.....++.+.-...+|..++|+..|.+|+.|+.. |.+.||+|++...+
T Consensus 265 ~~kvtaa~fH~~t-~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV 343 (893)
T KOG0291|consen 265 SSKVTAAAFHKGT-NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV 343 (893)
T ss_pred ccceeeeeccCCc-eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecccee
Confidence 3789999999987 899999999999999999999999998888999999999999999999876 89999999999888
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 001472 94 RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTA 173 (1072)
Q Consensus 94 ~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~t 173 (1072)
...++|...+.+++++|||+++++|+.||.|+|||..++-|+.+|..|...|+.+.|+..|+.+++.+.||+|+.||+..
T Consensus 344 lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 344 LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeeecC-CceEEEEEcCCCcEEEEEECCCe-EEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEE-ECCcEE
Q 001472 174 GKLLHDFKFHE-GHIRSIDFHPLEFLLATGSADRT-VKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLK 250 (1072)
Q Consensus 174 gk~i~~~~~h~-g~ItsLafSPdg~lLaTgS~DGt-IrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasG-sdg~I~ 250 (1072)
....++|.... -...|++..|.|.+++.|+.|.. |++|++.+|+.+..+.+|.++|.+++|+|+|..|++| .|.+|+
T Consensus 424 YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVR 503 (893)
T KOG0291|consen 424 YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVR 503 (893)
T ss_pred cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEE
Confidence 99988887543 45678999999999999988864 9999999999999999999999999999999999997 577899
Q ss_pred EEEecC-CeeecccccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeee----------------ecCCCCCCCC
Q 001472 251 VYSWEP-VICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPY----------------GVGAPEPDQS 313 (1072)
Q Consensus 251 Vwd~~s-~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~----------------~v~~~~~~~~ 313 (1072)
+|++-. ...+..+......+...+.|||+-|++++-||.|.+||......... ..........
T Consensus 504 iW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K 583 (893)
T KOG0291|consen 504 IWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGK 583 (893)
T ss_pred EEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCC
Confidence 999754 44566677777888899999999999999999999999743322200 0000012346
Q ss_pred CeeEEEECCCCCccceEEEEEeccCc
Q 001472 314 ICTEVKFNPPGSHSLEKVGIIGRSTS 339 (1072)
Q Consensus 314 ~ItsVaFSPDGs~lLa~VlaiG~stG 339 (1072)
..+.+++|+||.. +++.|.+..
T Consensus 584 ~Ftti~ySaDG~~----IlAgG~sn~ 605 (893)
T KOG0291|consen 584 TFTTICYSADGKC----ILAGGESNS 605 (893)
T ss_pred ceEEEEEcCCCCE----EEecCCccc
Confidence 8899999999994 555555554
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=299.73 Aligned_cols=288 Identities=27% Similarity=0.529 Sum_probs=253.0
Q ss_pred EEEEecC-CCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCc--eEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001472 8 LQEFVAH-SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT--ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1072)
Q Consensus 8 I~~L~gH-sg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~--~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~I 84 (1072)
.+.+.+| ...|.|+.|+++| .++++++.|+.+++|+..... ....+.+|...|.+++|+|++.++++++.|++|+|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeeecccccCceEEEEEcCCC-CeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence 3445555 7899999999999 779999999999999997776 67777899999999999999999999999999999
Q ss_pred EEc-CCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecC
Q 001472 85 WDL-EESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163 (1072)
Q Consensus 85 WDl-~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~D 163 (1072)
||+ ..+..++.+.+|...|++++|+|+|+++++|+.|+.|+|||+++++++..+.+|.+.|.+++|++++.+|++++.|
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 999 5668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCc--eEEEeeecCCc--eEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCC---eEEEEEeC
Q 001472 164 NVVKVWDLTAGK--LLHDFKFHEGH--IRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG---VHAITFHP 236 (1072)
Q Consensus 164 GsI~IWDl~tgk--~i~~~~~h~g~--ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~---VtsIafSP 236 (1072)
+.|++||+.++. +...+..+... +++++|+|++.+|++++.|+.+++||+..+..+..+..|... +.+..+++
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST 389 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC
Confidence 999999999999 55666665554 999999999999999999999999999999999888888764 44455678
Q ss_pred CCCEEEEEEC-CcEEEEEecCCeeecccccC-C-CeeeeEEecCCCEEEEEE--cCCeEEEEEcC
Q 001472 237 DGRTLFSGFD-DNLKVYSWEPVICHDSVDMG-W-STLGDLCINDGKLLGCSF--YRNSVGIWVAD 296 (1072)
Q Consensus 237 DG~~LasGsd-g~I~Vwd~~s~~~~~~l~~~-~-s~i~~l~spDGk~LAsgs--~DGsVrIWDld 296 (1072)
.|.++++|+. +.|++|+..+......+..+ . ......+.+...++++++ .|+.+++|..+
T Consensus 390 ~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 390 GGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999999865 56999999987766666655 3 334455567888999888 68999999754
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=275.79 Aligned_cols=315 Identities=17% Similarity=0.251 Sum_probs=279.2
Q ss_pred ceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 001472 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1072)
Q Consensus 6 k~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IW 85 (1072)
..+..|..|++.|.+++.+|+. +++++|+.|..-+||++.++..+..+.+|+..|+++.|+.+|.+||+|..+|.|.||
T Consensus 55 dS~~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred cceeehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 3567899999999999999965 999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCe
Q 001472 86 DLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNV 165 (1072)
Q Consensus 86 Dl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGs 165 (1072)
+..++.....+...-..|.-+.|||-+..|+.|+.||.+.+|.+.++...+.+.+|..++++-.|.|+|+.++++..||+
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 99999988888767778999999999999999999999999999998889999999999999999999999999999999
Q ss_pred EEEEECCCCceEEEeee-cCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCC--------CCCC---eEEEE
Q 001472 166 VKVWDLTAGKLLHDFKF-HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP--------EVTG---VHAIT 233 (1072)
Q Consensus 166 I~IWDl~tgk~i~~~~~-h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~--------h~~~---VtsIa 233 (1072)
|++|++.+++++..+.. ......++.++..+..++.|..++.+++....+|+.+....+ +... |.++.
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP 293 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence 99999999999888763 234578899999999999999999999999999988877663 2233 44445
Q ss_pred EeCCCCEEEEE-ECCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCC
Q 001472 234 FHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQ 312 (1072)
Q Consensus 234 fSPDG~~LasG-sdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~ 312 (1072)
|+..=.+.++| -++.|.|||+......+...+...++...|.+ ..+|++++.+|.|++||..++.+.... .+|.
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y----~GH~ 368 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTY----TGHQ 368 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEE----ecCc
Confidence 55555666776 47889999999888888777777788888877 789999999999999999998887665 5889
Q ss_pred CCeeEEEECCCCCc
Q 001472 313 SICTEVKFNPPGSH 326 (1072)
Q Consensus 313 ~~ItsVaFSPDGs~ 326 (1072)
..|.+.+.+|+++.
T Consensus 369 ~~Il~f~ls~~~~~ 382 (399)
T KOG0296|consen 369 MGILDFALSPQKRL 382 (399)
T ss_pred hheeEEEEcCCCcE
Confidence 99999999999993
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=302.38 Aligned_cols=252 Identities=25% Similarity=0.526 Sum_probs=233.1
Q ss_pred EEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCC-------------------------------CceEEEeeC
Q 001472 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGK-------------------------------PTALMSLCG 56 (1072)
Q Consensus 8 I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t-------------------------------~~~l~sl~~ 56 (1072)
..++..-...++|..|++|+ .+||.|-.|..|++|.+.. ......+.+
T Consensus 371 ~YT~~nt~~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEcCCcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 44555555789999999998 7999999999999998752 112345789
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 001472 57 LSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH 136 (1072)
Q Consensus 57 hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~ 136 (1072)
|.++|+.+.|+|+.++|++++.|+++++|.+.+...+..+++|..+|+++.|+|.|-|||+++.|++-++|......+++
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR 529 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR 529 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCC
Q 001472 137 TYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF 216 (1072)
Q Consensus 137 ~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tg 216 (1072)
.+.+|...|.|+.|+|++.|+++|+.|.++++||+.+|..++.|.+|.++|.+++|+|+|.+|++|+.||.|.+||+.++
T Consensus 530 ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeeCCCCCCeEEEEEeCCCCEEEEE-ECCcEEEEEecCCeee
Q 001472 217 ELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICH 260 (1072)
Q Consensus 217 e~i~~~~~h~~~VtsIafSPDG~~LasG-sdg~I~Vwd~~s~~~~ 260 (1072)
..+..+..|.+.|.++.|+.||..|++| .|+.+++||+......
T Consensus 610 ~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 610 SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 9999999999999999999999999996 5667999998765443
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=280.90 Aligned_cols=288 Identities=22% Similarity=0.427 Sum_probs=265.8
Q ss_pred ceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 001472 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1072)
Q Consensus 6 k~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IW 85 (1072)
...+.+.+|..+|+.+-|+|+- .++++++.|++|++||..+++....+++|...+..++|+..|++|++++.|-.+.+|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSE-ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred CchhhhhccccceeeeeeccCc-eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence 3456688999999999999997 788899999999999999999999999999999999999999999999999999999
Q ss_pred EcCC-CeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCC
Q 001472 86 DLEE-SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN 164 (1072)
Q Consensus 86 Dl~t-gk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DG 164 (1072)
|.++ .++++.+.+|...|.+++|-|.|+++++++.|.+|+.|++.++-++.++.+|...|..+..+.||.++++++.|.
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dq 257 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQ 257 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCc
Confidence 9986 567778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCceEEEeeecCCceEEEEEcCC---------------CcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCe
Q 001472 165 VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPL---------------EFLLATGSADRTVKFWDLETFELIGSTRPEVTGV 229 (1072)
Q Consensus 165 sI~IWDl~tgk~i~~~~~h~g~ItsLafSPd---------------g~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~V 229 (1072)
+|++|-+.++++...+..|.-+|-+++|.|. +.++.+++.|++|++||+.++.++.++.+|...|
T Consensus 258 tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwV 337 (406)
T KOG0295|consen 258 TLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWV 337 (406)
T ss_pred eEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccccee
Confidence 9999999999998999999999999999763 2589999999999999999999999999999999
Q ss_pred EEEEEeCCCCEEEEEEC-CcEEEEEecCCeeecccccCCCeeeeEEec-CCCEEEEEEcCCeEEEEE
Q 001472 230 HAITFHPDGRTLFSGFD-DNLKVYSWEPVICHDSVDMGWSTLGDLCIN-DGKLLGCSFYRNSVGIWV 294 (1072)
Q Consensus 230 tsIafSPDG~~LasGsd-g~I~Vwd~~s~~~~~~l~~~~s~i~~l~sp-DGk~LAsgs~DGsVrIWD 294 (1072)
+.++|+|.|+||+++.| +.+++||++...|...+..+......+-++ +..|+++|+-|..+++|.
T Consensus 338 r~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 338 RGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 99999999999999765 569999999999999988776666666665 455999999999999995
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-29 Score=262.05 Aligned_cols=287 Identities=20% Similarity=0.323 Sum_probs=244.8
Q ss_pred CcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe--eEEEEeCCCCCeEE
Q 001472 28 CRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK--MVRTLTGHKSNCTA 105 (1072)
Q Consensus 28 ~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk--~i~tl~~h~~~Vts 105 (1072)
.-+|++++.|.+|++|...+|.+..++......|..+...|+++.|++++. -.|++||+.++. ++.++.+|...|.+
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEE
Confidence 368999999999999999999999999988899999999999999999886 569999998765 58899999999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEee-ecC
Q 001472 106 VEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK-FHE 184 (1072)
Q Consensus 106 LafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~-~h~ 184 (1072)
+.|..+|+++++|+.||.++|||++...+.+.+. +..+|+++..+|+...|++|..+|.|++||+....+..++- ...
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 9999999999999999999999999977777776 67999999999999999999999999999998876655543 334
Q ss_pred CceEEEEEcCCCcEEEEEECCCeEEEEECCCC------cEEEeeCCCCCCeEEEEEeCCCCEEEEE-ECCcEEEEEecCC
Q 001472 185 GHIRSIDFHPLEFLLATGSADRTVKFWDLETF------ELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPV 257 (1072)
Q Consensus 185 g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tg------e~i~~~~~h~~~VtsIafSPDG~~LasG-sdg~I~Vwd~~s~ 257 (1072)
..|.++...|||.+|+.+...|..++|++-+. +++.++..|.+.+..+.+|||+++|+++ +|..++||..+..
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 67999999999999999999999999998753 4567788899999999999999999986 5667999999987
Q ss_pred -eeecccccC-CCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEE
Q 001472 258 -ICHDSVDMG-WSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKF 320 (1072)
Q Consensus 258 -~~~~~l~~~-~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaF 320 (1072)
+....+..+ .-...+.|+.||.||++++.|+.+++|++..++..... .+|.....|++.
T Consensus 248 ~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy----~gh~K~~vc~~l 308 (311)
T KOG0315|consen 248 FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY----QGHHKAAVCVAL 308 (311)
T ss_pred eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec----CCcccccEEEEe
Confidence 333334433 23566788899999999999999999999776644332 355555555543
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=301.57 Aligned_cols=210 Identities=30% Similarity=0.605 Sum_probs=204.0
Q ss_pred CceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001472 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1072)
Q Consensus 5 Gk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~I 84 (1072)
+...+.+.||.++|..+.|+|+. ++|++++.|++|+||.+.+...+..+.+|..+|+++.|+|.|-|+|+++.|++-++
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArL 519 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARL 519 (707)
T ss_pred CceeEEeecCCCceeeeeecccc-cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeee
Confidence 44556799999999999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCC
Q 001472 85 WDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN 164 (1072)
Q Consensus 85 WDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DG 164 (1072)
|......+.+.+.+|.+.|.|+.|||+..|+++|+.|.+|++||+.+|..++.|.+|.++|.+++|+|+|++|++|+.||
T Consensus 520 Ws~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 520 WSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDG 599 (707)
T ss_pred eecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCC
Q 001472 165 VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET 215 (1072)
Q Consensus 165 sI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~t 215 (1072)
.|++||+.++..+..+.+|.+.|.++.|+.+|.+|++|+.|.+|++||+..
T Consensus 600 ~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 999999999999999999999999999999999999999999999999875
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=291.77 Aligned_cols=288 Identities=22% Similarity=0.363 Sum_probs=248.6
Q ss_pred ceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCC-CceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001472 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGK-PTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1072)
Q Consensus 6 k~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t-~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~I 84 (1072)
+.++.|.||+..|.++.|.|....+|++|+.|+.|+||++-. +.++.++.+|..+|..++|+++|..|++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 357789999999999999995559999999999999999855 8899999999999999999999999999999999999
Q ss_pred EEcCCCeeEEEEeCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecC
Q 001472 85 WDLEESKMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163 (1072)
Q Consensus 85 WDl~tgk~i~tl~~h~~~VtsLafSPdg-~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~D 163 (1072)
||+++|+++..+. ....++|+.|+|++ +.|++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+++++.+.|
T Consensus 285 wDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 285 WDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 9999999999887 46678999999998 789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCceEEEee-ecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCc---EEEeeCCCC--CCeEEEEEeCC
Q 001472 164 NVVKVWDLTAGKLLHDFK-FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE---LIGSTRPEV--TGVHAITFHPD 237 (1072)
Q Consensus 164 GsI~IWDl~tgk~i~~~~-~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge---~i~~~~~h~--~~VtsIafSPD 237 (1072)
+.++||+.+.+-.+..+. .+.....++..+|++.++++-+.|..|.+|.+...- ....+.+|. +.-..+.||||
T Consensus 364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 999999998876654433 233456789999999999999999999999875421 223344443 45678999999
Q ss_pred CCEEEEE-ECCcEEEEEecCCeeecccccCCCeeeeEEe-c-CCCEEEEEEcCCeEEEEE
Q 001472 238 GRTLFSG-FDDNLKVYSWEPVICHDSVDMGWSTLGDLCI-N-DGKLLGCSFYRNSVGIWV 294 (1072)
Q Consensus 238 G~~LasG-sdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~s-p-DGk~LAsgs~DGsVrIWD 294 (1072)
|.+|++| ++|.+.+|||++.+....+..+..++..+.+ | ....+|++++||.|++|+
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999998 5677999999999888888877555555544 4 345789999999999995
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-28 Score=303.58 Aligned_cols=282 Identities=20% Similarity=0.285 Sum_probs=235.6
Q ss_pred EEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCC----c----eEEEeeCCCCCeEEEEEcC-CCCEEEEEEcCC
Q 001472 10 EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP----T----ALMSLCGLSSPVDSVAFDS-AEVLVLAGASTG 80 (1072)
Q Consensus 10 ~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~----~----~l~sl~~hs~~ItsLafSP-dG~~LatGS~DG 80 (1072)
.+.+|.+.|.+++|+|+| .+||+|+.||.|+||++... . ....+. +...+.+++|++ ++.+|++++.||
T Consensus 478 ~~~~~~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred cccCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCC
Confidence 355699999999999998 89999999999999997531 1 122233 356789999987 578999999999
Q ss_pred eEEEEEcCCCeeEEEEeCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEc-CCCCEEE
Q 001472 81 VIKLWDLEESKMVRTLTGHKSNCTAVEFHP-FGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFT-PDGRWVV 158 (1072)
Q Consensus 81 sI~IWDl~tgk~i~tl~~h~~~VtsLafSP-dg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafS-PDG~~La 158 (1072)
.|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||.|++||++++..+..+..+ ..+.++.|+ ++|.+|+
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~la 634 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLA 634 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEE
Confidence 999999999999999999999999999997 7889999999999999999999988888754 579999995 5799999
Q ss_pred EEecCCeEEEEECCCCc-eEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCC------CcEEEeeCCCCCCeEE
Q 001472 159 SGGFDNVVKVWDLTAGK-LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET------FELIGSTRPEVTGVHA 231 (1072)
Q Consensus 159 TGS~DGsI~IWDl~tgk-~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~t------ge~i~~~~~h~~~Vts 231 (1072)
+|+.||.|++||++.++ .+..+.+|...|.++.|. ++.+|++++.|+.|++||+.. +..+..+.+|...+..
T Consensus 635 tgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~ 713 (793)
T PLN00181 635 FGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF 713 (793)
T ss_pred EEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence 99999999999998876 466778899999999997 688999999999999999974 3567788889889999
Q ss_pred EEEeCCCCEEEEEE-CCcEEEEEecCCeeeccc-------------ccC-CCeeeeEEecCCCEEEEEEcCCeEEEEEc
Q 001472 232 ITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSV-------------DMG-WSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1072)
Q Consensus 232 IafSPDG~~LasGs-dg~I~Vwd~~s~~~~~~l-------------~~~-~s~i~~l~spDGk~LAsgs~DGsVrIWDl 295 (1072)
++|+++|.+|++|+ ++.+++|+.........+ ..+ ..+....|.+++.+|++|+.||.|+||++
T Consensus 714 v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 714 VGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 99999999999986 566999997543221110 111 12445556689999999999999999985
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=285.43 Aligned_cols=279 Identities=23% Similarity=0.390 Sum_probs=246.0
Q ss_pred CCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEE
Q 001472 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVR 94 (1072)
Q Consensus 15 sg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~ 94 (1072)
...|..+.|.|+| +.|++|+..|.+.||+......-..+..|..+|.++.|+++|.++++|..+|.|++|+..-. .+.
T Consensus 96 kc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVK 173 (464)
T ss_pred ccceeeEEEcCCC-ceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhH
Confidence 3579999999999 88999999999999997554444456789999999999999999999999999999997543 344
Q ss_pred EEeCC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 001472 95 TLTGH-KSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTA 173 (1072)
Q Consensus 95 tl~~h-~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~t 173 (1072)
.+..| ...|++++|+|+...|++++.||.|+|||....+....+.+|.-.|.++.|+|...+|++|+.|..|++||.++
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence 44544 48999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred CceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEE--EECCcEEE
Q 001472 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS--GFDDNLKV 251 (1072)
Q Consensus 174 gk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~Las--Gsdg~I~V 251 (1072)
|.++.++..|...|..+.|++++++|++++.|..+++||+++.+.+..+++|...++++.|+|-..-|++ |+|+.+..
T Consensus 254 g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh 333 (464)
T KOG0284|consen 254 GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH 333 (464)
T ss_pred cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999999996554443 67889999
Q ss_pred EEecCCeeecccc--cCCCeeeeEEecCCCEEEEEEcCCeEEEEEc
Q 001472 252 YSWEPVICHDSVD--MGWSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1072)
Q Consensus 252 wd~~s~~~~~~l~--~~~s~i~~l~spDGk~LAsgs~DGsVrIWDl 295 (1072)
|.+........+. +...+....+.|-|.+|++|+.|.++++|.-
T Consensus 334 ~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 334 WVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred EeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 9998555544443 3345566677799999999999999999953
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-28 Score=284.30 Aligned_cols=265 Identities=28% Similarity=0.485 Sum_probs=234.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe--eEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCe
Q 001472 57 LSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK--MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDI-RKKG 133 (1072)
Q Consensus 57 hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk--~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDl-rtgk 133 (1072)
+...|.++.|+++|+++++++.++.+++|+...++ ..+.+.+|...|.+++|+|+++++++++.|++|+|||+ ..+.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 36889999999999999999999999999998777 77777899999999999999999999999999999999 5568
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEEC
Q 001472 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213 (1072)
Q Consensus 134 ~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl 213 (1072)
.+..+.+|...|++++|+|+|+++++|+.|+.|+|||+++++++..+.+|.+.|.+++|++++++|++++.||.|++||+
T Consensus 238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~ 317 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDL 317 (456)
T ss_pred EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEEC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCc--EEEeeCCCCCC--eEEEEEeCCCCEEEEEECC-cEEEEEecCCeeecccccCCCe----eeeEEecCCCEEEEE
Q 001472 214 ETFE--LIGSTRPEVTG--VHAITFHPDGRTLFSGFDD-NLKVYSWEPVICHDSVDMGWST----LGDLCINDGKLLGCS 284 (1072)
Q Consensus 214 ~tge--~i~~~~~h~~~--VtsIafSPDG~~LasGsdg-~I~Vwd~~s~~~~~~l~~~~s~----i~~l~spDGk~LAsg 284 (1072)
.++. ++..+..+... ++++.|+|+|.+++++..+ .+++|++....+...+..+... .....+++|.++++|
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg 397 (456)
T KOG0266|consen 318 ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSG 397 (456)
T ss_pred CCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEE
Confidence 9998 45666655544 9999999999999998766 7999999988776665544332 222334789999999
Q ss_pred EcCCeEEEEEcCCCceeeeecCCCCCC-CCCeeEEEECCCCC
Q 001472 285 FYRNSVGIWVADVSHVEPYGVGAPEPD-QSICTEVKFNPPGS 325 (1072)
Q Consensus 285 s~DGsVrIWDlds~~l~~~~v~~~~~~-~~~ItsVaFSPDGs 325 (1072)
+.|+.|.+|+...+...... .+| ...+..+.|+|...
T Consensus 398 ~~d~~v~~~~~~s~~~~~~l----~~h~~~~~~~~~~~~~~~ 435 (456)
T KOG0266|consen 398 SEDGSVYVWDSSSGGILQRL----EGHSKAAVSDLSSHPTEN 435 (456)
T ss_pred eCCceEEEEeCCccchhhhh----cCCCCCceeccccCCCcC
Confidence 99999999999865554444 466 78899999999888
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-27 Score=248.16 Aligned_cols=286 Identities=20% Similarity=0.317 Sum_probs=235.0
Q ss_pred ceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCc---eEEEe-eCCCCCeEEEEEcCCCCEEEEEEcCCe
Q 001472 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT---ALMSL-CGLSSPVDSVAFDSAEVLVLAGASTGV 81 (1072)
Q Consensus 6 k~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~---~l~sl-~~hs~~ItsLafSPdG~~LatGS~DGs 81 (1072)
..++.+.+|.+.|..++|+|-.+.+||+|+.|..|+||+...+. ....+ .+|+..|+.++|+|.|++|++++.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 46778999999999999999833799999999999999987532 22223 478999999999999999999999999
Q ss_pred EEEEEcCCC--eeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eEEEEEecCCCCeEEEEEcCCCCE
Q 001472 82 IKLWDLEES--KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK---GCIHTYKGHTRGINTIRFTPDGRW 156 (1072)
Q Consensus 82 I~IWDl~tg--k~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtg---k~v~~l~~h~~~VtsLafSPDG~~ 156 (1072)
+.||.-..+ +++..+.+|...|.|++|+++|++||+++.|+.|.||.+..+ .+...++.|...|..+.|+|...+
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 999986644 678899999999999999999999999999999999998744 467888999999999999999999
Q ss_pred EEEEecCCeEEEEECC---CCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEE
Q 001472 157 VVSGGFDNVVKVWDLT---AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAIT 233 (1072)
Q Consensus 157 LaTGS~DGsI~IWDl~---tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIa 233 (1072)
|++++.|.+|++|+-. ...++.++.+|...|.+++|++.|..|++++.|++++||-..+. .-..|...++.+.
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v~ 240 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDVP 240 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEeee
Confidence 9999999999999876 33678999999999999999999999999999999999986521 1123456789999
Q ss_pred EeCCCCEEEEEECCcEEEEEecCCeee--------cccccCCCeeeeEEecC-CCEEEEEEcCCeEEEEEcC
Q 001472 234 FHPDGRTLFSGFDDNLKVYSWEPVICH--------DSVDMGWSTLGDLCIND-GKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 234 fSPDG~~LasGsdg~I~Vwd~~s~~~~--------~~l~~~~s~i~~l~spD-Gk~LAsgs~DGsVrIWDld 296 (1072)
|. +|-...+|.|+.|++|.-...... ....+...+....+.|. ...|++|+.||.|++|.+.
T Consensus 241 W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 241 WD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ec-ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 98 554444467888999986632110 11122334555666674 6789999999999999753
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=279.97 Aligned_cols=306 Identities=23% Similarity=0.438 Sum_probs=263.6
Q ss_pred CceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001472 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1072)
Q Consensus 5 Gk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~I 84 (1072)
|.++..|..|.|+|..++|+|.+ .++++||.|-.|++|+....+++.++.+|-..|..+.|++.-.+|++++.|-+|+|
T Consensus 41 ~tli~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrI 119 (1202)
T KOG0292|consen 41 GTLIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRI 119 (1202)
T ss_pred hhHHhhhhccCCccceeeecCCC-CeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEE
Confidence 45678899999999999999998 79999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--------C-------------------e--EE
Q 001472 85 WDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK--------K-------------------G--CI 135 (1072)
Q Consensus 85 WDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrt--------g-------------------k--~v 135 (1072)
|+|++.+++..+.+|...|.|..|+|....+++++-|.+|++||+.. + . ..
T Consensus 120 WNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK 199 (1202)
T KOG0292|consen 120 WNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK 199 (1202)
T ss_pred EeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee
Confidence 99999999999999999999999999999999999999999999852 1 0 12
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCc--eEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEEC
Q 001472 136 HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK--LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213 (1072)
Q Consensus 136 ~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk--~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl 213 (1072)
+.+.+|..+|+.++|+|.-.+|++|+.|..|++|.+...+ .+.+..+|...|.++-|+|..+++++.+.|++|++||+
T Consensus 200 ~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 200 HVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred eeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence 4567899999999999999999999999999999986554 24456689999999999999999999999999999999
Q ss_pred CCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCCeEEEE
Q 001472 214 ETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIW 293 (1072)
Q Consensus 214 ~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrIW 293 (1072)
...+.+..+.......+.++.+|..+++++|.|+++.||.++.... ..+.+++.++. . .|..|+.+
T Consensus 280 ~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErp------------a~~v~~n~LfY-v-kd~~i~~~ 345 (1202)
T KOG0292|consen 280 TKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERP------------AYAVNGNGLFY-V-KDRFIRSY 345 (1202)
T ss_pred ccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCc------------eEEEcCCEEEE-E-ccceEEee
Confidence 9999999999888999999999999999999999999999874322 12223344444 3 38899999
Q ss_pred EcCCCceeeee-cCCCCCCCCCeeEEEECCCCC
Q 001472 294 VADVSHVEPYG-VGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 294 Dlds~~l~~~~-v~~~~~~~~~ItsVaFSPDGs 325 (1072)
|+.+..-.++. +..+.....++.++.|+|-.+
T Consensus 346 d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~ 378 (1202)
T KOG0292|consen 346 DLRTQKDTAVASLRRPGTLWQPPRSLSYNPAEN 378 (1202)
T ss_pred eccccccceeEeccCCCcccCCcceeeeccccC
Confidence 98764433333 222223357788999999777
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-28 Score=279.28 Aligned_cols=715 Identities=17% Similarity=0.231 Sum_probs=429.9
Q ss_pred CCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEE
Q 001472 70 EVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIR 149 (1072)
Q Consensus 70 G~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLa 149 (1072)
+.+++.+..+-.+++||.+. +..|...+.++..-..++.+++|+.|..+-+|.+..-..+..+.+|..+|.++.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~ 77 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLT 77 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeee
Confidence 34455555566788888643 345777888888777788999999999999999988778888999999999999
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCe
Q 001472 150 FTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGV 229 (1072)
Q Consensus 150 fSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~V 229 (1072)
|+++..+|++|+.+|+|++||+..++.++.+.+|...+.++.|+|.+.+.+.|+.|+.+.+||++...+.+.+..|...+
T Consensus 78 f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv 157 (825)
T KOG0267|consen 78 FDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVV 157 (825)
T ss_pred cCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred EEEEEeCCCCEEEEEEC-CcEEEEEecCCeeecccccCCC-eeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCC
Q 001472 230 HAITFHPDGRTLFSGFD-DNLKVYSWEPVICHDSVDMGWS-TLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGA 307 (1072)
Q Consensus 230 tsIafSPDG~~LasGsd-g~I~Vwd~~s~~~~~~l~~~~s-~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~ 307 (1072)
..+.|+|+|+|++.|++ ..++|||...++....+..+.. ....-+.|..-+++.|+.|+.|++||+.+-.+...
T Consensus 158 ~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s---- 233 (825)
T KOG0267|consen 158 DVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS---- 233 (825)
T ss_pred EEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeec----
Confidence 99999999999999876 6799999998888777764333 33333556667889999999999998863322221
Q ss_pred CCCCCCCeeEEEECCCCCccceEEEEEeccCcceEEeecCCcccceEEEeecCCCCccceeeeecCCCCCCcCCCCChhh
Q 001472 308 PEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDSTGGKPVASQKIGPLNSPKVVPPLDSEE 387 (1072)
Q Consensus 308 ~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD~et~eI~~i~iDs~gGepv~~~~~sP~~s~k~~~~~~~~~ 387 (1072)
..+....|.+++|+|||.. .. .|+......
T Consensus 234 ~~~~~~~v~~~~fn~~~~~-----~~----------------------------~G~q~sl~~----------------- 263 (825)
T KOG0267|consen 234 GKPETDGVRSLAFNPDGKI-----VL----------------------------SGEQISLSE----------------- 263 (825)
T ss_pred cCCccCCceeeeecCCcee-----ee----------------------------cCchhhhhh-----------------
Confidence 1455788999999999992 11 222211111
Q ss_pred hhhhccccCCCCCCCCCccccccccccccccccccCCCCCCCCCCCCCCCCccccccCCCCCcCcccccCCCCCchhhhh
Q 001472 388 ISDLQTEKQNPAIGVPELSNGQALDKSFIVPSIVPQESPAGKDSSFSAGESITFSRTKPGMLLRPAHVQKPSNSKYDAER 467 (1072)
Q Consensus 388 l~~~~s~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1072)
.++.+ +|+|+ +..+++.+.
T Consensus 264 ----------------------------------------~~~a~--------------------ah~~~-~~~~~Ep~~ 282 (825)
T KOG0267|consen 264 ----------------------------------------SRTAS--------------------AHVRK-TLARWEPEM 282 (825)
T ss_pred ----------------------------------------hhccc--------------------ceeec-ccccccccc
Confidence 00000 67777 566666666
Q ss_pred hhhcccccccccccCCCCcCcCCCcccccccCcccccccccccccccccccccccccCCCCCCCCcCCCCCCCCCCcCcc
Q 001472 468 LSTAAESESLNSKKSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQKPPKQEDGDKSRDCSKITNS 547 (1072)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (1072)
....+.+.. .+...+..+.+|..+.- -.++.+++|++.. ..
T Consensus 283 ~~~~vqs~~--~~ek~v~v~~d~~~ln~---------------~~s~~~~~kl~~~----------------------~~ 323 (825)
T KOG0267|consen 283 DGAVVQSNS--HKEKVVAVGRDPQDLNA---------------FSSKVNLSKLEDS----------------------TY 323 (825)
T ss_pred ccceeeecC--CcccccccccCcccccc---------------ccccccccccccc----------------------cc
Confidence 554444222 12222222223322222 1133344443332 00
Q ss_pred eeEeeceeeecCCcchhhhHhhhhcc-ccccchhcccccccccccccccccccCCCccccCCCcccccccccccccCCcc
Q 001472 548 VKFVNGVAVVPGRTRSLVERFERREK-VNSNEDLAANVIPQTRLSRNEDQAADVTPQTTLSSNEDHVANVTSQTRLNGNE 626 (1072)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (1072)
| .+.+.|.+| +|--- ...+|+......| .++|.|.+|++.
T Consensus 324 ~-------p~l~~t~~l----~rl~~S~q~dep~~~~~k~----------------------------~~~s~t~~~s~~ 364 (825)
T KOG0267|consen 324 V-------PLLKETKSL----GRLSVSYQTDEPLDKSTKP----------------------------HRRSSTSQNSDR 364 (825)
T ss_pred c-------ceeccccch----hccccccccCCCcccCCCC----------------------------cccccccccccc
Confidence 1 122333331 11100 0112211111111 245667777776
Q ss_pred ccccccccccccccCCCCCCCccCccCCCCCccccccCCCCCCCCCCc-----cccccc-ccccCCCCCcccceecCccc
Q 001472 627 YQAATAPQQTRLSSNIDPVANVTPQTLPSGNEDQAANVTPQTRPSSNE-----DQTANV-IRQTRPSSNEDQAVIVNPQT 700 (1072)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~ 700 (1072)
+.+ ...+++|.+ ++.+|.++.+ ...+...+.-.++|.+.. ++..+| ..++|....+++|.++|+++
T Consensus 365 ~~~-~s~P~~r~~------s~~~~di~~~-s~~lss~e~~~~~P~r~s~tn~~k~~sgvSs~~~rs~ts~~~~~k~n~ka 436 (825)
T KOG0267|consen 365 SEV-ESKPLTRES------SNLSPDIPKE-SRTLSSTESNSEYPHRVSPTNPVKIVSGVSSSVTRSPTSPVNPGKANPKA 436 (825)
T ss_pred ccc-ccCcccccc------CCCCcccccc-cccccccccCCCCCCcccccCccccccccccccccCCCCCCCccccCccc
Confidence 666 344555533 5556777666 788888886667777655 445554 89999999999999999999
Q ss_pred ccCCCccccc----cCCC-CCcCCCCc---cccccc--cCccccccccccccccccccCCCCccccccCCCcccccCccc
Q 001472 701 RRHSNEDQAS----NIAP-YTRHDRNE---DRATNI--TPQSKISRNQDQATNITSHMGLNSNENRATNIPSRSRLNSRE 770 (1072)
Q Consensus 701 ~~~~~~~~~~----~~~~-~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (1072)
+.++.+.+.. +..| -....-++ +..... .+..++.+|++ +|..+++.+... +++.|++
T Consensus 437 ~~~~~e~~~~~v~~~~~p~~~q~~Esp~~~~~~arttP~s~~P~~~~~r--~~~rs~~~~~~s--------t~~~rts-- 504 (825)
T KOG0267|consen 437 EIASVEQDNNPVIQDPLPTIEQATESPVPSTRIARTTPASVQPIALNSR--SNSRSDPPPPTS--------TVPERTS-- 504 (825)
T ss_pred cccccccccccccCCCcccccccccCccccccccccCCccccccccccc--ccCCCCCCCccc--------ccccccc--
Confidence 9866632211 1111 00111111 111122 33445566766 777777776443 4455665
Q ss_pred cccCCCCcceeecccccccCCCcchhccccccccccCCCcccccCcccccccccccccccccccccccccccccccccCc
Q 001472 771 DQSTNTPSQTIVNGAENKATKTPTQMRLKSSENQVTSTPPRARLNSSIEGQATNIPIRRRFNRNVDQTTNVTRHRRSISN 850 (1072)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (1072)
+..++|+++.++.-.-.+.++-.+ ...++-+..+.-+..++|+.++++-..-..- +|+|.. -
T Consensus 505 --sspvmpv~lp~~s~~ty~~~~v~a-------------~~~a~~s~~r~~~~~~~~a~~~~~~~~~~~l-~r~r~~--~ 566 (825)
T KOG0267|consen 505 --SSPVMPVILPQASMSTYPEPPVGA-------------SSTARTSSARILPVTFNQANNISSEEAPVTL-RRQRRN--S 566 (825)
T ss_pred --cCCccccccCCCcccccCCCCccc-------------cCcccccccccccccccccccccCcCCcccc-ccccCC--C
Confidence 567778887777533222222222 1244556677777788888887655544444 222221 1
Q ss_pred cccccccceeecccCCccccccccCcccccccccCCCC-CCCCcccCCCCCCCChhHHHHHHHHhHHHHHHHHHHhhhhh
Q 001472 851 TDQATSTTAHVAVKNNDDIATVITPHVTALSYERTSTP-KGEPQISGRDTPVANEGEAVESLMETHDIFISTLRSRLTKL 929 (1072)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~l~~r~~~l 929 (1072)
--+--++..++..+|..|.--..+ --++++++ ++.|...++-..-.=+|-...++.++-+.+.. .+..-+
T Consensus 567 pa~~~~tk~~~~~~~t~~~s~ias------r~r~s~t~~~~tPa~~~~~~~mt~~et~~t~~~~q~~n~~~---ee~~~s 637 (825)
T KOG0267|consen 567 PARVMPTKLNQSVNMTSDTSHIAS------RHRVSPTQMLATPAVIDQVGDMTADETRPTNMQPQRDNLVQ---EEPIIS 637 (825)
T ss_pred cccccccccchhhcccccccchhh------hhccCccccccccceeccccccccccccccccccccccccc---cccccC
Confidence 112223333444444332211100 01122222 46664333322222223333333333333322 111111
Q ss_pred HHHHhhhccCChhHHHHHHHhCCCCchhHHHHhhhhch----hhhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHH
Q 001472 930 QVVRHFWERNDIKGGINALRKLPDHSADVMSVLMEKME----ILNLDLFLCLLPMLMGLLDSKMERHASISLEMLLKLVV 1005 (1072)
Q Consensus 930 ~~~~~~w~~~~~~~~i~~~~~~~d~~~dv~~~l~~~~~----~~~l~~c~~~lp~~~~ll~s~~e~~~~~~l~~l~~~~~ 1005 (1072)
. +..| ..+-+.+.-| .+|+.|..++. .|-+==|..+++.|..|...---.-.-..|+.|-..+-
T Consensus 638 ~------~eed---I~e~im~~Hd---e~lstlqSRl~kLqiVR~~Wer~DiK~sI~s~~kl~D~sV~ADvL~Iltek~e 705 (825)
T KOG0267|consen 638 D------REED---IVEDIMGTHN---EFLSTLQSRLTKLQIVRHFWERSDIKGSIGSLRKLADNSVQADVLNILTEKIE 705 (825)
T ss_pred c------chhh---hhhhhhhcch---HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhHHHHHHHHHhhhhh
Confidence 0 1112 2233333333 45555555544 66666788999999988765432222255666655555
Q ss_pred HhhhhhhcccCC-CCCcccCchhHHHhhHHHHHHHHHH
Q 001472 1006 VFGPMIHSTLSA-PPAVGVDLHAEQRRECCNRCFMQLQ 1042 (1072)
Q Consensus 1006 ~f~~~i~~~~~~-~~~vgvd~~~e~r~~~c~~c~~~l~ 1042 (1072)
+++-=..++|.- --.++++-+++.+-.+|..|.+.|.
T Consensus 706 iLtLDl~t~l~P~lt~LLgS~~e~~v~vsld~Llklv~ 743 (825)
T KOG0267|consen 706 ILTLDLCTQLLPVLTALLGSKTERPVNVSLDMLLKLVA 743 (825)
T ss_pred HhhHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHHH
Confidence 543322222221 1257889999999999999877654
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=248.93 Aligned_cols=265 Identities=24% Similarity=0.400 Sum_probs=232.1
Q ss_pred CccCceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCc--eEEEeeCCCCCeEEEEEcCCCCEEEEEEcC
Q 001472 2 AKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT--ALMSLCGLSSPVDSVAFDSAEVLVLAGAST 79 (1072)
Q Consensus 2 aktGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~--~l~sl~~hs~~ItsLafSPdG~~LatGS~D 79 (1072)
+.+|.+.+++....+.|+.+.+.|++ ++||+++. -.|++||+.++. ++.++.+|...|.++.|..+|+++++|+.|
T Consensus 27 a~tG~C~rTiqh~dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD 104 (311)
T KOG0315|consen 27 ALTGICSRTIQHPDSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED 104 (311)
T ss_pred hhcCeEEEEEecCccceeeEEEcCCc-chhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC
Confidence 35789999999889999999999998 77777775 579999996654 688999999999999999999999999999
Q ss_pred CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEE
Q 001472 80 GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK-GHTRGINTIRFTPDGRWVV 158 (1072)
Q Consensus 80 GsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~-~h~~~VtsLafSPDG~~La 158 (1072)
|+++|||++.-...+.+. |..+|.++..+|+...|++|..+|.|++||+....+.+.+- .....|.++...|||.+++
T Consensus 105 gt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~ 183 (311)
T KOG0315|consen 105 GTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLA 183 (311)
T ss_pred ceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEE
Confidence 999999999866666655 77999999999999999999999999999999887766654 3445799999999999999
Q ss_pred EEecCCeEEEEECCCC------ceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCC-cEEEeeCCCCCCeEE
Q 001472 159 SGGFDNVVKVWDLTAG------KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF-ELIGSTRPEVTGVHA 231 (1072)
Q Consensus 159 TGS~DGsI~IWDl~tg------k~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tg-e~i~~~~~h~~~Vts 231 (1072)
.+...|..++|++-.. +++..++.|.+.+..+.++|++++|++++.|.+++||+.++. +.-..+.+|...+..
T Consensus 184 a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWd 263 (311)
T KOG0315|consen 184 AANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWD 263 (311)
T ss_pred EecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEe
Confidence 9999999999998664 356778899999999999999999999999999999999987 555667888889999
Q ss_pred EEEeCCCCEEEEE-ECCcEEEEEecCCeeecccccCCCe
Q 001472 232 ITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDMGWST 269 (1072)
Q Consensus 232 IafSPDG~~LasG-sdg~I~Vwd~~s~~~~~~l~~~~s~ 269 (1072)
.+||.||.||++| +|+..++|++..++....+..+...
T Consensus 264 c~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 264 CAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKA 302 (311)
T ss_pred eeeccCccEEEecCCCCceeecccccCceeeecCCcccc
Confidence 9999999999997 4666999999988877766655443
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=256.72 Aligned_cols=285 Identities=22% Similarity=0.363 Sum_probs=247.5
Q ss_pred eEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEEC-CCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 001472 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAI-GKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1072)
Q Consensus 7 ~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl-~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IW 85 (1072)
.+-.+.||.+.|.++.|+|+| .+||+|+.|..|.||++ ...+....+++|.+.|..+.|.++++.|++++.|.+|+.|
T Consensus 39 p~m~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhhcCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 344678999999999999988 89999999999999995 5667788889999999999999999999999999999999
Q ss_pred EcCCCeeEEEEeCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCC
Q 001472 86 DLEESKMVRTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN 164 (1072)
Q Consensus 86 Dl~tgk~i~tl~~h~~~VtsLafSPdg~-~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DG 164 (1072)
|.++|+.++.+++|...|..+.-+.-|. ++.+++.||++++||+++...++.+. ....++++.|..++..+++|+-|+
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccC
Confidence 9999999999999999999988555554 56777889999999999999888886 445799999999999999999999
Q ss_pred eEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCC----cEEEeeCCCC----CCeEEEEEeC
Q 001472 165 VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF----ELIGSTRPEV----TGVHAITFHP 236 (1072)
Q Consensus 165 sI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tg----e~i~~~~~h~----~~VtsIafSP 236 (1072)
.|++||++.+...+.+.+|...|+.+..+++|.++.+-+.|.++++||++-+ .++..+.++. .....++|+|
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp 276 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP 276 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence 9999999999999999999999999999999999999999999999999853 3455555543 2356789999
Q ss_pred CCCEEEEEE-CCcEEEEEecCCeeecccccCCCe-eeeEEecCCCEEEEEEcCCeEEEE
Q 001472 237 DGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWST-LGDLCINDGKLLGCSFYRNSVGIW 293 (1072)
Q Consensus 237 DG~~LasGs-dg~I~Vwd~~s~~~~~~l~~~~s~-i~~l~spDGk~LAsgs~DGsVrIW 293 (1072)
++.++.+|+ |..+++||.....+.-.++.+... ....|.|...+|.+++.|.+|.+=
T Consensus 277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 999999985 556899998887776666666544 455667899999999999988763
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=260.40 Aligned_cols=276 Identities=24% Similarity=0.361 Sum_probs=248.6
Q ss_pred eEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001472 50 ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDI 129 (1072)
Q Consensus 50 ~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDl 129 (1072)
....+.+|.+.|.|+++.|...+|++|+.|++|.|||+.+|++..++.+|...|..+++++-..|+++++.|+.|+.||+
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEE
Q 001472 130 RKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVK 209 (1072)
Q Consensus 130 rtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIr 209 (1072)
...+.++.+.+|-..|.|++.+|.-..|++|+.|..+++||+++...+..+.+|..+|.++.+.|....+++|+.|++|+
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 99999999999999999999999989999999999999999999999999999999999999999888999999999999
Q ss_pred EEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCCe
Q 001472 210 FWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNS 289 (1072)
Q Consensus 210 IWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGs 289 (1072)
+||+..|+....+..|...+++++.+|....+++++.+.|+-|++..+.....+..+..++..+......++++|+..|.
T Consensus 303 lWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~ 382 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGS 382 (460)
T ss_pred EeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceE
Confidence 99999999999999999999999999999999999999999999999888888888888888888888889999999999
Q ss_pred EEEEEcCCCceeeeecCCC----CCCCCCeeEEEECCCCC
Q 001472 290 VGIWVADVSHVEPYGVGAP----EPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 290 VrIWDlds~~l~~~~v~~~----~~~~~~ItsVaFSPDGs 325 (1072)
+.+||...+..-....... ......|.+.+|--.|.
T Consensus 383 ~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~ 422 (460)
T KOG0285|consen 383 IMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGS 422 (460)
T ss_pred EEEEecCcCcccccccccccCCccccccceeEEeecccCc
Confidence 9999987665433221110 11234566667766666
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=278.85 Aligned_cols=332 Identities=23% Similarity=0.414 Sum_probs=271.9
Q ss_pred cCceEEEEecCCCCeEEEEEecCCCc-EEEEEECCCeEEEEECCCCce-EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCe
Q 001472 4 RGYKLQEFVAHSANVNCISIGKKACR-FLITGGDDQKVNLWAIGKPTA-LMSLCGLSSPVDSVAFDSAEVLVLAGASTGV 81 (1072)
Q Consensus 4 tGk~I~~L~gHsg~Vt~IafSPdg~~-lLaTGs~DGtV~IWDl~t~~~-l~sl~~hs~~ItsLafSPdG~~LatGS~DGs 81 (1072)
.++..+.|+||.|.|.++.|+|+-.+ +|++|+.|+.+++||+.+... +..+..|...|++++|++++..+++++.|..
T Consensus 136 ~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkv 215 (775)
T KOG0319|consen 136 NGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKV 215 (775)
T ss_pred CCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcE
Confidence 57789999999999999999998633 578999999999999985554 7777889999999999999998888888888
Q ss_pred EEEEEcCCCee--------------------------E------------------------------------------
Q 001472 82 IKLWDLEESKM--------------------------V------------------------------------------ 93 (1072)
Q Consensus 82 I~IWDl~tgk~--------------------------i------------------------------------------ 93 (1072)
+.|||+.+.+. +
T Consensus 216 i~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~ 295 (775)
T KOG0319|consen 216 IIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQ 295 (775)
T ss_pred EEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCc
Confidence 88888732100 0
Q ss_pred ---------------------------------------------------------------EEEeCCCCCeEEEEEcC
Q 001472 94 ---------------------------------------------------------------RTLTGHKSNCTAVEFHP 110 (1072)
Q Consensus 94 ---------------------------------------------------------------~tl~~h~~~VtsLafSP 110 (1072)
..+.+|.+.|.++....
T Consensus 296 ~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~ 375 (775)
T KOG0319|consen 296 LLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWS 375 (775)
T ss_pred eEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecc
Confidence 11235666666666444
Q ss_pred CCCEEEEEeCCCeEEEEECCCCe----EEEEEecCCCCeEEEEEcCCC-CEEEEEecCCeEEEEECCCCc-----eEE--
Q 001472 111 FGEFFASGCMDTNLKIWDIRKKG----CIHTYKGHTRGINTIRFTPDG-RWVVSGGFDNVVKVWDLTAGK-----LLH-- 178 (1072)
Q Consensus 111 dg~~LaSgs~DGsI~IWDlrtgk----~v~~l~~h~~~VtsLafSPDG-~~LaTGS~DGsI~IWDl~tgk-----~i~-- 178 (1072)
+|.+|++|+.|.++++|.++++. ++....+|...|.+++++..+ .+|+++|.|++|++|++...+ .+.
T Consensus 376 ~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~ 455 (775)
T KOG0319|consen 376 SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC 455 (775)
T ss_pred cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehh
Confidence 66788999999999999774432 355567899999999997754 489999999999999997622 111
Q ss_pred --EeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEE-ECCcEEEEEec
Q 001472 179 --DFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWE 255 (1072)
Q Consensus 179 --~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasG-sdg~I~Vwd~~ 255 (1072)
....|+..|++++++|+..++++|+.|.+.+||++........+.+|.-+|.++.|++..+.++++ +|.+|+||.+.
T Consensus 456 ~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 456 RYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS 535 (775)
T ss_pred hHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec
Confidence 223689999999999999999999999999999999999999999999999999999999999986 56679999999
Q ss_pred CCeeecccccC-CCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEE
Q 001472 256 PVICHDSVDMG-WSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGII 334 (1072)
Q Consensus 256 s~~~~~~l~~~-~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~Vlai 334 (1072)
+..|.+.+..+ ..++.+.|..+|+.|++++.||-|+||++.++...... +.|.+.|..+.-+|++. ....
T Consensus 536 ~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl----D~H~DrvWaL~~~~~~~-----~~~t 606 (775)
T KOG0319|consen 536 TFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL----DAHNDRVWALSVSPLLD-----MFVT 606 (775)
T ss_pred cceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh----hhccceeEEEeecCccc-----eeEe
Confidence 99999999854 56677788899999999999999999999877654443 78999999999999998 4555
Q ss_pred eccCcceEEe
Q 001472 335 GRSTSGFRST 344 (1072)
Q Consensus 335 G~stG~~r~i 344 (1072)
|..+|.+.++
T Consensus 607 gg~Dg~i~~w 616 (775)
T KOG0319|consen 607 GGGDGRIIFW 616 (775)
T ss_pred cCCCeEEEEe
Confidence 6666643333
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=261.88 Aligned_cols=250 Identities=25% Similarity=0.458 Sum_probs=235.5
Q ss_pred ccCceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCC-CceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCe
Q 001472 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGK-PTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGV 81 (1072)
Q Consensus 3 ktGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t-~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGs 81 (1072)
.+|+..+.++||.+.|..|+|+..| ++|++++.|-.+++||+.+ .+++..+.+|...|.++.|-|.|.+|++++.|.+
T Consensus 138 ~tg~~e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t 216 (406)
T KOG0295|consen 138 ETGELERSLRGHTDSVFDISFDASG-KYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNT 216 (406)
T ss_pred cchhhhhhhhccccceeEEEEecCc-cEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccc
Confidence 4677788899999999999999999 9999999999999999976 5677788899999999999999999999999999
Q ss_pred EEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC--------
Q 001472 82 IKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPD-------- 153 (1072)
Q Consensus 82 I~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPD-------- 153 (1072)
|+.|++.+|-++.++.+|.+.|..+..+.||..+++++.|.+|++|-+.++.+...+..|..+|.|++|-|.
T Consensus 217 ik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~ 296 (406)
T KOG0295|consen 217 IKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISE 296 (406)
T ss_pred eeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999762
Q ss_pred -------CCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCC
Q 001472 154 -------GRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEV 226 (1072)
Q Consensus 154 -------G~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~ 226 (1072)
+.++.+++.|++|++||+.++.++.++.+|...|..++|+|.|+||+++..|+++++||++++++...+..|.
T Consensus 297 at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~ 376 (406)
T KOG0295|consen 297 ATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHE 376 (406)
T ss_pred ccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCc
Confidence 3589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCEEEEEE-CCcEEEEE
Q 001472 227 TGVHAITFHPDGRTLFSGF-DDNLKVYS 253 (1072)
Q Consensus 227 ~~VtsIafSPDG~~LasGs-dg~I~Vwd 253 (1072)
.-++++.|+.+..++++|+ +..+++|.
T Consensus 377 hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 377 HFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999999986 55688885
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-27 Score=267.75 Aligned_cols=282 Identities=20% Similarity=0.397 Sum_probs=257.7
Q ss_pred EEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001472 10 EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89 (1072)
Q Consensus 10 ~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~t 89 (1072)
.|..|+..|.|+.|||.. .+++++-.+|.|.||+.++...+..+.....+|.++.|-...+++++|+.|..|+||+..+
T Consensus 8 k~~~rSdRVKsVd~HPte-Pw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTE-PWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred HhhccCCceeeeecCCCC-ceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 456699999999999998 7888899999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEEecCCCCeEEEEEcC-CCCEEEEEecCCeEE
Q 001472 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK-GCIHTYKGHTRGINTIRFTP-DGRWVVSGGFDNVVK 167 (1072)
Q Consensus 90 gk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtg-k~v~~l~~h~~~VtsLafSP-DG~~LaTGS~DGsI~ 167 (1072)
++.+..+..|.+.|.+++.||...++++++.|-.|++||.+.+ .+.+.+.+|...|.+++|.| |.+.+++++.|++|+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 9999999999999999999999999999999999999999764 57889999999999999999 677999999999999
Q ss_pred EEECCCCceEEEeeecCCceEEEEEcCCC--cEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEE
Q 001472 168 VWDLTAGKLLHDFKFHEGHIRSIDFHPLE--FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF 245 (1072)
Q Consensus 168 IWDl~tgk~i~~~~~h~g~ItsLafSPdg--~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGs 245 (1072)
+|.+.+..+..++.+|...|.|+++-+-| .+|++|+.|.+|+|||..+..++.++.+|...|..+.|+|.-.++++|+
T Consensus 167 VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs 246 (794)
T KOG0276|consen 167 VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS 246 (794)
T ss_pred EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec
Confidence 99999999999999999999999998854 6999999999999999999999999999999999999999999999986
Q ss_pred -CCcEEEEEecCCeeecccccCCCeeeeEEe-cCCCEEEEEEcCCeEEE
Q 001472 246 -DDNLKVYSWEPVICHDSVDMGWSTLGDLCI-NDGKLLGCSFYRNSVGI 292 (1072)
Q Consensus 246 -dg~I~Vwd~~s~~~~~~l~~~~s~i~~l~s-pDGk~LAsgs~DGsVrI 292 (1072)
||+++||.-.+......+..+..-..++.. ..++.++.|...|.|.|
T Consensus 247 EDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 247 EDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 556999999998888888877766665554 45667888877776554
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-28 Score=265.61 Aligned_cols=280 Identities=22% Similarity=0.362 Sum_probs=237.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE
Q 001472 56 GLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCI 135 (1072)
Q Consensus 56 ~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v 135 (1072)
....+|..+.|.|+|+.|++|+..|.+.+|+.........++.|...|.++.|+++|.++++|+.+|.|++|+..-. .+
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nV 172 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NV 172 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hh
Confidence 34578999999999999999999999999997554444456789999999999999999999999999999997544 34
Q ss_pred EEEecCC-CCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECC
Q 001472 136 HTYKGHT-RGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLE 214 (1072)
Q Consensus 136 ~~l~~h~-~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~ 214 (1072)
..+.+|. ..|++++|+|+...|++++.||.|+|||....+....+.+|...|.+++|+|...+|++|+.|..|++||.+
T Consensus 173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 4555444 889999999988999999999999999999999888899999999999999999999999999999999999
Q ss_pred CCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECC-cEEEEEecCCeeecccccCC-CeeeeEEec-CCCEEEEEEcCCeEE
Q 001472 215 TFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD-NLKVYSWEPVICHDSVDMGW-STLGDLCIN-DGKLLGCSFYRNSVG 291 (1072)
Q Consensus 215 tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg-~I~Vwd~~s~~~~~~l~~~~-s~i~~l~sp-DGk~LAsgs~DGsVr 291 (1072)
++.++.++..|...|..+.|.+++.+|++++.+ .+++||++..+....+..+. ......|+| ...+|.+|+.||.|.
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceE
Confidence 999999999999999999999999999998655 59999999777666666443 444555565 567899999999999
Q ss_pred EEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcceEEe
Q 001472 292 IWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRST 344 (1072)
Q Consensus 292 IWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~i 344 (1072)
.|.+. ..+++. ..+..|...|.+++|+|=|- +++.|...-..++.
T Consensus 333 h~~v~--~~~p~~-~i~~AHd~~iwsl~~hPlGh-----il~tgsnd~t~rfw 377 (464)
T KOG0284|consen 333 HWVVG--LEEPLG-EIPPAHDGEIWSLAYHPLGH-----ILATGSNDRTVRFW 377 (464)
T ss_pred EEecc--cccccc-CCCcccccceeeeeccccce-----eEeecCCCcceeee
Confidence 99887 233333 23478899999999999888 77776665544444
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-25 Score=251.64 Aligned_cols=314 Identities=18% Similarity=0.318 Sum_probs=263.6
Q ss_pred CceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCce--EEEeeCCCCCeEEEEEcCCCCEEEEEEcC---
Q 001472 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTA--LMSLCGLSSPVDSVAFDSAEVLVLAGAST--- 79 (1072)
Q Consensus 5 Gk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~--l~sl~~hs~~ItsLafSPdG~~LatGS~D--- 79 (1072)
......|..|...++-..|+|.| .|+|+|...|+|+|||...... ...++...++|..++|+.+++.|++.+..
T Consensus 49 ~~~~~iYtEH~~~vtVAkySPsG-~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer 127 (603)
T KOG0318|consen 49 PASVDIYTEHAHQVTVAKYSPSG-FYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER 127 (603)
T ss_pred ccceeeeccccceeEEEEeCCCc-eEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc
Confidence 34466789999999999999998 7999999999999999855332 33467778999999999999999887753
Q ss_pred -CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 001472 80 -GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWV 157 (1072)
Q Consensus 80 -GsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~-~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~L 157 (1072)
|.+.+|| +|..+..+.+|...|.++.|-|.-. .+++|+.|+.|.+|+-.-.+....+..|...|.|+.|+|||.+|
T Consensus 128 fg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~F 205 (603)
T KOG0318|consen 128 FGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRF 205 (603)
T ss_pred eeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeE
Confidence 4566665 7888889999999999999998765 68999999999999977777777788899999999999999999
Q ss_pred EEEecCCeEEEEECCCCceEEEee---ecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCC---CeEE
Q 001472 158 VSGGFDNVVKVWDLTAGKLLHDFK---FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVT---GVHA 231 (1072)
Q Consensus 158 aTGS~DGsI~IWDl~tgk~i~~~~---~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~---~Vts 231 (1072)
++++.||.|.+||-.+|+.+..+. +|.+.|.+++|+||+..+++++.|.+++|||+.+.+++.++..... .-..
T Consensus 206 at~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG 285 (603)
T KOG0318|consen 206 ATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVG 285 (603)
T ss_pred EEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEE
Confidence 999999999999999999999998 8999999999999999999999999999999999988887754332 3445
Q ss_pred EEEeCCCCEEEEEECCcEEEEEecCCeeecccccCCCeeee-EEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCC
Q 001472 232 ITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGD-LCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEP 310 (1072)
Q Consensus 232 IafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~~s~i~~-l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~ 310 (1072)
+.|. .+.++.+..+|.|.+++.........+..+...+.. ..++|+++|++|++||.|.-|+...+....+. +..
T Consensus 286 ~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~---g~~ 361 (603)
T KOG0318|consen 286 CLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLA---GKG 361 (603)
T ss_pred EEEe-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccc---ccc
Confidence 5666 556666678889999999887777777666555544 45689999999999999999998776655543 257
Q ss_pred CCCCeeEEEECCCCC
Q 001472 311 DQSICTEVKFNPPGS 325 (1072)
Q Consensus 311 ~~~~ItsVaFSPDGs 325 (1072)
|...|.+++-+..|.
T Consensus 362 h~nqI~~~~~~~~~~ 376 (603)
T KOG0318|consen 362 HTNQIKGMAASESGE 376 (603)
T ss_pred ccceEEEEeecCCCc
Confidence 888899888887666
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=248.73 Aligned_cols=270 Identities=20% Similarity=0.337 Sum_probs=235.0
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcC-CCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001472 51 LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE-ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDI 129 (1072)
Q Consensus 51 l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~-tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDl 129 (1072)
+..+.+|.+.|+.+.|+|+|.+|++|+.|..|.+|++. ..+....+++|.+.|..+.|.+|+..+++++.|.+|+.||.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 44567999999999999999999999999999999954 45667788899999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeE
Q 001472 130 RKKGCIHTYKGHTRGINTIRFTPDGR-WVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTV 208 (1072)
Q Consensus 130 rtgk~v~~l~~h~~~VtsLafSPDG~-~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtI 208 (1072)
++|+.+..+++|...++.+.-+.-|. ++.+|+.||++++||+++...++.+. ...+++++.|...+..+++|+-|+.|
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~i 198 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDI 198 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCce
Confidence 99999999999999999988555444 56778899999999999988888775 45679999999999999999999999
Q ss_pred EEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEE-EECCcEEEEEecCCe----eeccccc-----CCCeeeeEEecCC
Q 001472 209 KFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWEPVI----CHDSVDM-----GWSTLGDLCINDG 278 (1072)
Q Consensus 209 rIWDl~tge~i~~~~~h~~~VtsIafSPDG~~Las-Gsdg~I~Vwd~~s~~----~~~~l~~-----~~s~i~~l~spDG 278 (1072)
++||++..+....+.+|...|+.+..+++|.++.+ +.+..+++||+++.. ++..+.. ....+.+.|+|++
T Consensus 199 kvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~ 278 (338)
T KOG0265|consen 199 KVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG 278 (338)
T ss_pred eeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC
Confidence 99999999999999999999999999999999998 567889999998643 2333322 2345677888999
Q ss_pred CEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCC
Q 001472 279 KLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 279 k~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs 325 (1072)
.++..|+.|..+++||.......-. + .+|.+.|.+++|+|...
T Consensus 279 ~~i~ags~dr~vyvwd~~~r~~lyk-l---pGh~gsvn~~~Fhp~e~ 321 (338)
T KOG0265|consen 279 TKITAGSADRFVYVWDTTSRRILYK-L---PGHYGSVNEVDFHPTEP 321 (338)
T ss_pred CccccccccceEEEeecccccEEEE-c---CCcceeEEEeeecCCCc
Confidence 9999999999999999865443322 2 68999999999999988
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=280.82 Aligned_cols=300 Identities=19% Similarity=0.236 Sum_probs=234.7
Q ss_pred CCeEEEEECCCCceEEE-----eeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC----e----eEEEEeCCCCCe
Q 001472 37 DQKVNLWAIGKPTALMS-----LCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES----K----MVRTLTGHKSNC 103 (1072)
Q Consensus 37 DGtV~IWDl~t~~~l~s-----l~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tg----k----~i~tl~~h~~~V 103 (1072)
+|.+++|+......... +..|...|.+++|+|+|++|++|+.||.|+||++... . ....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 67788888876554333 3458899999999999999999999999999997532 1 122333 35678
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEecCCeEEEEECCCCceEEEee
Q 001472 104 TAVEFHPF-GEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181 (1072)
Q Consensus 104 tsLafSPd-g~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSP-DG~~LaTGS~DGsI~IWDl~tgk~i~~~~ 181 (1072)
.+++|++. +.+|++++.||.|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||.|++||+.++..+..+.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 99999874 78999999999999999999999999999999999999997 78899999999999999999999888887
Q ss_pred ecCCceEEEEEc-CCCcEEEEEECCCeEEEEECCCCc-EEEeeCCCCCCeEEEEEeCCCCEEEEE-ECCcEEEEEecCC-
Q 001472 182 FHEGHIRSIDFH-PLEFLLATGSADRTVKFWDLETFE-LIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPV- 257 (1072)
Q Consensus 182 ~h~g~ItsLafS-Pdg~lLaTgS~DGtIrIWDl~tge-~i~~~~~h~~~VtsIafSPDG~~LasG-sdg~I~Vwd~~s~- 257 (1072)
.+ ..+.++.|+ +++.+|++|+.||.|++||+++.. .+..+..|...|.++.|. ++.+|+++ .|+.|++||+...
T Consensus 616 ~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~ 693 (793)
T PLN00181 616 TK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSI 693 (793)
T ss_pred cC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCc
Confidence 44 678999995 579999999999999999998765 466777898999999997 66777765 5677999998742
Q ss_pred -----eeecccccCCC-eeeeEEecCCCEEEEEEcCCeEEEEEcCCCcee-eeecC--------CCCCCCCCeeEEEECC
Q 001472 258 -----ICHDSVDMGWS-TLGDLCINDGKLLGCSFYRNSVGIWVADVSHVE-PYGVG--------APEPDQSICTEVKFNP 322 (1072)
Q Consensus 258 -----~~~~~l~~~~s-~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~-~~~v~--------~~~~~~~~ItsVaFSP 322 (1072)
.....+..+.. .....+.+++.+|++|+.||.|.+|+....... .+... ....+...|.+++|+|
T Consensus 694 ~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 694 SGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred cccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence 23333433333 334556789999999999999999997543211 11110 0123456799999999
Q ss_pred CCCccceEEEEEeccCcceEEe
Q 001472 323 PGSHSLEKVGIIGRSTSGFRST 344 (1072)
Q Consensus 323 DGs~lLa~VlaiG~stG~~r~i 344 (1072)
+|. .++.|...|.+.++
T Consensus 774 ~~~-----~lva~~~dG~I~i~ 790 (793)
T PLN00181 774 QSS-----TLVAANSTGNIKIL 790 (793)
T ss_pred CCC-----eEEEecCCCcEEEE
Confidence 999 66777777755543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=271.34 Aligned_cols=285 Identities=22% Similarity=0.417 Sum_probs=254.3
Q ss_pred EEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001472 10 EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89 (1072)
Q Consensus 10 ~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~t 89 (1072)
.|..-+..|..++|+|.. .+++++-..|.|.+||..-+..+..+..|.++|..++|+|.+.++++|+.|..|+||+..+
T Consensus 4 kfEskSsRvKglsFHP~r-PwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKR-PWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred hhhcccccccceecCCCC-CEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 455667889999999998 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEE
Q 001472 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW 169 (1072)
Q Consensus 90 gk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IW 169 (1072)
.+++.++.+|-+.|..+.||+.-.+|++++.|.+|+||++.+++++..+.+|...|.|..|+|....+++++.|.+|++|
T Consensus 83 rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC---------------------------c--eEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcE--
Q 001472 170 DLTAG---------------------------K--LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFEL-- 218 (1072)
Q Consensus 170 Dl~tg---------------------------k--~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~-- 218 (1072)
|+..- . ..+.+.+|+..|.-++|+|.-.++++|+.|..|++|.+...+.
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWE 242 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 242 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccccee
Confidence 98421 0 1234568999999999999999999999999999999876543
Q ss_pred EEeeCCCCCCeEEEEEeCCCCEEEEE-ECCcEEEEEecCCeeecccccCCCeeeeEEe-cCCCEEEEEEcCCeEEEEEcC
Q 001472 219 IGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDMGWSTLGDLCI-NDGKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 219 i~~~~~h~~~VtsIafSPDG~~LasG-sdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~s-pDGk~LAsgs~DGsVrIWDld 296 (1072)
+.+..+|...|.++-|+|...++++. -|+.|+|||+....++..+.....-++.+.. |..+++|+| .|+.+.||.++
T Consensus 243 vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkle 321 (1202)
T KOG0292|consen 243 VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLE 321 (1202)
T ss_pred ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEc
Confidence 45678899999999999988888885 5667999999999998888766666655554 688888877 67778888775
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=260.58 Aligned_cols=251 Identities=24% Similarity=0.439 Sum_probs=231.3
Q ss_pred cCceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEE
Q 001472 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIK 83 (1072)
Q Consensus 4 tGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~ 83 (1072)
+...++.|....-+|.+..|-... +++++|+.|..|+||+.++++.+..+..|...|.+++.+|...++++++.|-.|+
T Consensus 44 tqtmVksfeV~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iK 122 (794)
T KOG0276|consen 44 TQTMVKSFEVSEVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIK 122 (794)
T ss_pred cceeeeeeeecccchhhheeeecc-ceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEE
Confidence 445677888888899999998876 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCC-eeEEEEeCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC--CEEEE
Q 001472 84 LWDLEES-KMVRTLTGHKSNCTAVEFHP-FGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDG--RWVVS 159 (1072)
Q Consensus 84 IWDl~tg-k~i~tl~~h~~~VtsLafSP-dg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG--~~LaT 159 (1072)
+||++.+ .+.+++.+|...|.+++|+| |.+.|++++.|++|++|.+.+..+..++.+|..+|+|+.|.+.| .||++
T Consensus 123 lW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIs 202 (794)
T KOG0276|consen 123 LWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLIS 202 (794)
T ss_pred EeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEe
Confidence 9999864 67889999999999999999 56799999999999999999999999999999999999999854 59999
Q ss_pred EecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCC
Q 001472 160 GGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGR 239 (1072)
Q Consensus 160 GS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~ 239 (1072)
|+.|..|+|||.++..+++++.+|...|..++|+|.-.++++|+.||+++||...+.+....+.-..+.+.+|+-.+.+.
T Consensus 203 gaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~ 282 (794)
T KOG0276|consen 203 GADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDG 282 (794)
T ss_pred cCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999888888877778899999999988
Q ss_pred EEEEEECCcEEEEEec
Q 001472 240 TLFSGFDDNLKVYSWE 255 (1072)
Q Consensus 240 ~LasGsdg~I~Vwd~~ 255 (1072)
.+++|.|.+..+..+.
T Consensus 283 ~i~vG~Deg~i~v~lg 298 (794)
T KOG0276|consen 283 KIAVGFDEGSVTVKLG 298 (794)
T ss_pred eEEEeccCCcEEEEcc
Confidence 8999988876555543
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=268.13 Aligned_cols=291 Identities=23% Similarity=0.355 Sum_probs=256.0
Q ss_pred ccCceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 001472 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVI 82 (1072)
Q Consensus 3 ktGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI 82 (1072)
++...++++-|..+.|..+.|-.....+||+++..+.+++|++.+.... .+.+|...|.++....+|.+|++|+.|.++
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~sv 389 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSV 389 (775)
T ss_pred cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceE
Confidence 3566777889999999999987665689999999999999998776654 789999999999966778999999999999
Q ss_pred EEEEcCCCe----eEEEEeCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeE-----EE----EEecCCCCeEEE
Q 001472 83 KLWDLEESK----MVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGC-----IH----TYKGHTRGINTI 148 (1072)
Q Consensus 83 ~IWDl~tgk----~i~tl~~h~~~VtsLafSPdg-~~LaSgs~DGsI~IWDlrtgk~-----v~----~l~~h~~~VtsL 148 (1072)
++|.++++. ++....+|...|.+++++..+ .+|++++.|++|++|++...+. +. ....|...|+|+
T Consensus 390 ilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~V 469 (775)
T KOG0319|consen 390 ILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCV 469 (775)
T ss_pred EEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccce
Confidence 999885442 345567899999999997755 4899999999999999976221 11 224688999999
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCC
Q 001472 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG 228 (1072)
Q Consensus 149 afSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~ 228 (1072)
+++|+.+++++|+.|.+.+||++........+.+|...|.++.|+|....+++++.|++|+||.+.++.+++++.+|...
T Consensus 470 aia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a 549 (775)
T KOG0319|consen 470 AIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA 549 (775)
T ss_pred EecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCEEEE-EECCcEEEEEecCCeeecccccCCCeeeeE-EecCCCEEEEEEcCCeEEEEE
Q 001472 229 VHAITFHPDGRTLFS-GFDDNLKVYSWEPVICHDSVDMGWSTLGDL-CINDGKLLGCSFYRNSVGIWV 294 (1072)
Q Consensus 229 VtsIafSPDG~~Las-Gsdg~I~Vwd~~s~~~~~~l~~~~s~i~~l-~spDGk~LAsgs~DGsVrIWD 294 (1072)
|..+.|-.+|+.|++ |++|-+++|++.+..|...++.+..-++.+ ..+.+.++++|+.||.|.+|.
T Consensus 550 Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 550 VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 999999999999988 567779999999999999998887666554 457888999999999999995
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-27 Score=257.32 Aligned_cols=287 Identities=17% Similarity=0.304 Sum_probs=241.3
Q ss_pred eEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCC---ceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEE
Q 001472 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP---TALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIK 83 (1072)
Q Consensus 7 ~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~---~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~ 83 (1072)
..+.|..|.+.|+-+.||++| +|||+++.|.+..||++... +..+++.+|..+|..+.||||.++|++++.+..+.
T Consensus 216 t~qil~~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 356688999999999999999 99999999999999988443 44778899999999999999999999999999999
Q ss_pred EEEcCCCeeEEEEeC-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEEe
Q 001472 84 LWDLEESKMVRTLTG-HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHT-RGINTIRFTPDGRWVVSGG 161 (1072)
Q Consensus 84 IWDl~tgk~i~tl~~-h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~-~~VtsLafSPDG~~LaTGS 161 (1072)
+||+.+|.....+.. +...+.+++|.|||..|++|+.|+.|+.||+. |..+..+++.. ..|.+++..+||+++++.+
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEe
Confidence 999999998776653 45789999999999999999999999999985 44455454432 4599999999999999999
Q ss_pred cCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCC--eEEEEEeC-CC
Q 001472 162 FDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG--VHAITFHP-DG 238 (1072)
Q Consensus 162 ~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~--VtsIafSP-DG 238 (1072)
.|..|++|+..+......+. ...+|++++++.+++++++.-.+..|++||+.....+..+.+|..+ +..-+|-. +.
T Consensus 374 ~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~ 452 (519)
T KOG0293|consen 374 VDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGND 452 (519)
T ss_pred cccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCc
Confidence 99999999988765554444 4567999999999999999999999999999988888888777654 44445554 44
Q ss_pred CEEEEEECC-cEEEEEecCCeeecccccCCCeeeeEEe-c-CCCEEEEEEcCCeEEEEEcC
Q 001472 239 RTLFSGFDD-NLKVYSWEPVICHDSVDMGWSTLGDLCI-N-DGKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 239 ~~LasGsdg-~I~Vwd~~s~~~~~~l~~~~s~i~~l~s-p-DGk~LAsgs~DGsVrIWDld 296 (1072)
.++++|+++ .|+||+..++.....+..+...+.++.+ | +..++|+++.||+|+||-..
T Consensus 453 ~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 453 KFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 788888754 5999999999999998888776666655 4 66799999999999999543
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=246.61 Aligned_cols=291 Identities=18% Similarity=0.234 Sum_probs=250.8
Q ss_pred cCceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEE
Q 001472 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIK 83 (1072)
Q Consensus 4 tGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~ 83 (1072)
+|..+.++.+|.+.|+|+.|+.+| .|||+|+.+|.|+||+..++.....+...-..|.-+.|+|.+..|++|+.||.+.
T Consensus 95 ~ge~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvW 173 (399)
T KOG0296|consen 95 TGEFAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVW 173 (399)
T ss_pred CCcceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEE
Confidence 466778899999999999999999 9999999999999999999998888876778899999999999999999999999
Q ss_pred EEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEec
Q 001472 84 LWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG-HTRGINTIRFTPDGRWVVSGGF 162 (1072)
Q Consensus 84 IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~-h~~~VtsLafSPDG~~LaTGS~ 162 (1072)
+|.+.++...+.+.+|+.++++-.|.|+|+.++++..||+|++||..++.+++.+.. ......++.++..+..++.|+.
T Consensus 174 mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~ 253 (399)
T KOG0296|consen 174 MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS 253 (399)
T ss_pred EEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence 999999888899999999999999999999999999999999999999999888863 3446788999999999999999
Q ss_pred CCeEEEEECCCCceEEEeee--------cCCceEEE---EEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEE
Q 001472 163 DNVVKVWDLTAGKLLHDFKF--------HEGHIRSI---DFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHA 231 (1072)
Q Consensus 163 DGsI~IWDl~tgk~i~~~~~--------h~g~ItsL---afSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~Vts 231 (1072)
++.+++....+|+.+..+.+ +...+.++ .|+..-.+.|+|+-||+|.|||+...+.... ..|..+|..
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~-c~he~~V~~ 332 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI-CEHEDGVTK 332 (399)
T ss_pred CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee-ccCCCceEE
Confidence 99999999999998877662 33334444 4455567899999999999999997765444 456678999
Q ss_pred EEEeCCCCEEEEEECCcEEEEEecCCeeecccccCCC-eeeeEEecCCCEEEEEEcCCeEEEEEcC
Q 001472 232 ITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWS-TLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 232 IafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~~s-~i~~l~spDGk~LAsgs~DGsVrIWDld 296 (1072)
+.|.++..+++++.++.++.||.+++.+...+..+.. ++..+.+|+++++++++.|+..+||++.
T Consensus 333 l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 333 LKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999944444446788899999999999988876654 4556677999999999999999999753
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-27 Score=262.72 Aligned_cols=277 Identities=22% Similarity=0.432 Sum_probs=237.2
Q ss_pred ceEEEeeCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEcCC-CeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 001472 49 TALMSLCGLSSPVDSVAFDS-AEVLVLAGASTGVIKLWDLEE-SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKI 126 (1072)
Q Consensus 49 ~~l~sl~~hs~~ItsLafSP-dG~~LatGS~DGsI~IWDl~t-gk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~I 126 (1072)
+.+..+.+|...|.++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45677899999999999999 899999999999999999976 8899999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECC
Q 001472 127 WDIRKKGCIHTYKGHTRGINTIRFTPDG-RWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSAD 205 (1072)
Q Consensus 127 WDlrtgk~v~~l~~h~~~VtsLafSPDG-~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~D 205 (1072)
||+++|+++..+. ....+.|+.|+|++ +.|++|+.|+.|+.||+++++.++++..|-+.|..+.|-++|..+++.+.|
T Consensus 285 wDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 285 WDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 9999999999997 45678999999988 789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCcEEEee-CCCCCCeEEEEEeCCCCEEEEE-ECCcEEEEEecCCee---eccc---ccCCCeeeeEEecC
Q 001472 206 RTVKFWDLETFELIGST-RPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVIC---HDSV---DMGWSTLGDLCIND 277 (1072)
Q Consensus 206 GtIrIWDl~tge~i~~~-~~h~~~VtsIafSPDG~~LasG-sdg~I~Vwd~~s~~~---~~~l---~~~~s~i~~l~spD 277 (1072)
+.++||+....-.+..+ ........++..+|++.++++- .++.|.+|....... ...+ ......+.+-|+||
T Consensus 364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 99999999877655443 2334457899999999999984 566788888654221 1122 22345567788999
Q ss_pred CCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccceE
Q 001472 278 GKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEK 330 (1072)
Q Consensus 278 Gk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~ 330 (1072)
|.+|++|..||.+.+||..+..+.... ..|.+.|..+.|+|-....+++
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~kl~~~l----kah~~~ci~v~wHP~e~Skvat 492 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTTKLVSKL----KAHDQPCIGVDWHPVEPSKVAT 492 (503)
T ss_pred CCeEEeecCCccEEEeechhhhhhhcc----ccCCcceEEEEecCCCcceeEe
Confidence 999999999999999998766554433 5778999999999987754443
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-27 Score=255.00 Aligned_cols=270 Identities=20% Similarity=0.422 Sum_probs=230.8
Q ss_pred CCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEE
Q 001472 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVR 94 (1072)
Q Consensus 15 sg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~ 94 (1072)
...|.|+.+..+ .+++|..|.+|+|||..+...+..+.+|.+.|.|+.|. .+.|++|+.|.+|+|||+++|+++.
T Consensus 197 skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 197 SKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred CCceEEEEecch---hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 468999998754 58999999999999999999999999999999999995 5699999999999999999999999
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---EEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEEC
Q 001472 95 TLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG---CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171 (1072)
Q Consensus 95 tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk---~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl 171 (1072)
++-+|.+.|..+.|+ +.++++++.|..|.+||+.... +.+.+.+|...|..+.|+ .+|+++++.|.+|++|++
T Consensus 272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST 347 (499)
T ss_pred HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence 999999999999998 6799999999999999997654 235567899999999996 569999999999999999
Q ss_pred CCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEE-EECCcEE
Q 001472 172 TAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLK 250 (1072)
Q Consensus 172 ~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~Las-Gsdg~I~ 250 (1072)
.+++.+..+.+|...|.|+.+. ++++++|+.|.+|++||+..|.++..+.+|..-|+++.|. .+.+++ +.||.|+
T Consensus 348 st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkik 423 (499)
T KOG0281|consen 348 STCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIK 423 (499)
T ss_pred cceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEE
Confidence 9999999999999999988874 8999999999999999999999999999999999999996 355666 5788999
Q ss_pred EEEecCCeeec---------cc-ccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCc
Q 001472 251 VYSWEPVICHD---------SV-DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSH 299 (1072)
Q Consensus 251 Vwd~~s~~~~~---------~l-~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~ 299 (1072)
|||+....... .+ .....++... -|...+++++.|.+|.|||...+.
T Consensus 424 vWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ--FD~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 424 VWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ--FDEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred EEecccccCCcccccchHHHhhhhccceeEEEe--ecceEEEeccCCCeEEEEEcCCCC
Confidence 99998654331 11 1111222222 256678888899999999986543
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=229.73 Aligned_cols=287 Identities=19% Similarity=0.312 Sum_probs=229.3
Q ss_pred eEEEeeCCCCCeEEEEEcCC-CCEEEEEEcCCeEEEEEcCCC---eeEEEE-eCCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 001472 50 ALMSLCGLSSPVDSVAFDSA-EVLVLAGASTGVIKLWDLEES---KMVRTL-TGHKSNCTAVEFHPFGEFFASGCMDTNL 124 (1072)
Q Consensus 50 ~l~sl~~hs~~ItsLafSPd-G~~LatGS~DGsI~IWDl~tg---k~i~tl-~~h~~~VtsLafSPdg~~LaSgs~DGsI 124 (1072)
.++.+.+|.+.+..++|+|. |..|++|+.|..|++|+...+ .+...+ .+|...|..++|+|.|++|++|+.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 45677899999999999997 899999999999999998753 233333 3688999999999999999999999999
Q ss_pred EEEECCC--CeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCC---ceEEEeeecCCceEEEEEcCCCcEE
Q 001472 125 KIWDIRK--KGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAG---KLLHDFKFHEGHIRSIDFHPLEFLL 199 (1072)
Q Consensus 125 ~IWDlrt--gk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tg---k~i~~~~~h~g~ItsLafSPdg~lL 199 (1072)
.||.-.. .+++..+.+|...|.|++|+++|.|||+++.|..|-||.+..+ ++...++.|...|..+.|+|...+|
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 9997553 3678999999999999999999999999999999999998754 4677888999999999999999999
Q ss_pred EEEECCCeEEEEECC---CCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECC-cEEEEEecCCeeecccccCCCeeeeEEe
Q 001472 200 ATGSADRTVKFWDLE---TFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD-NLKVYSWEPVICHDSVDMGWSTLGDLCI 275 (1072)
Q Consensus 200 aTgS~DGtIrIWDl~---tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg-~I~Vwd~~s~~~~~~l~~~~s~i~~l~s 275 (1072)
++++.|.+|++|+-. ...++.++..|...|.+++|++.|..|++++++ .++||-...... ..+.+......+.
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~---~~~sr~~Y~v~W~ 242 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS---GMHSRALYDVPWD 242 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc---hhcccceEeeeec
Confidence 999999999999866 456889999999999999999999999988655 588987542211 1111222222222
Q ss_pred cCCCEEEEEEcCCeEEEEEcCCCceeee---ecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcceEEee
Q 001472 276 NDGKLLGCSFYRNSVGIWVADVSHVEPY---GVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTS 345 (1072)
Q Consensus 276 pDGk~LAsgs~DGsVrIWDlds~~l~~~---~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~iv 345 (1072)
...|++++.|+.|++|........+. .......|...|++++|.|.++. .++.|...|..+++.
T Consensus 243 --~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~----~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 243 --NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSN----RLASGGDDGIVNFWE 309 (312)
T ss_pred --ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCC----ceeecCCCceEEEEE
Confidence 56899999999999997654322221 11223567889999999996553 666777777666553
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-25 Score=231.67 Aligned_cols=283 Identities=19% Similarity=0.303 Sum_probs=243.2
Q ss_pred ceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 001472 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1072)
Q Consensus 6 k~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IW 85 (1072)
+.++.+.+|.++|..+.|+-+| +|.++++.|.+|++|+...+..++++.+|...|..++.+.|...|++|+.|..+.+|
T Consensus 8 kr~~~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred hhceeecccccceEEEEEccCC-CEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 4677889999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEEecCCCCeEEEEEcCCCCEEEEEecC
Q 001472 86 DLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK--GCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163 (1072)
Q Consensus 86 Dl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtg--k~v~~l~~h~~~VtsLafSPDG~~LaTGS~D 163 (1072)
|+.+|+.++.+.+|.+.|..+.|+.+...+++|+.|..+++||.++. ++++.+......|.++... +..|++|+.|
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~D 164 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVD 164 (307)
T ss_pred EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccC
Confidence 99999999999999999999999999999999999999999998764 5778887778889999986 5579999999
Q ss_pred CeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCe--EEEEEeCCCCEE
Q 001472 164 NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGV--HAITFHPDGRTL 241 (1072)
Q Consensus 164 GsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~V--tsIafSPDG~~L 241 (1072)
|+++.||++.|.....+- ..+|++++|+++++.++.++.|++|++.|-.+|+.+..+.+|...- ...++......+
T Consensus 165 GtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV 242 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHV 242 (307)
T ss_pred CcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeE
Confidence 999999999998876655 4579999999999999999999999999999999999999887653 345666777888
Q ss_pred EEEEC-CcEEEEEecCCeeecccccCCCe--eeeEEecCCCEEEEEEcCCeEEEEE
Q 001472 242 FSGFD-DNLKVYSWEPVICHDSVDMGWST--LGDLCINDGKLLGCSFYRNSVGIWV 294 (1072)
Q Consensus 242 asGsd-g~I~Vwd~~s~~~~~~l~~~~s~--i~~l~spDGk~LAsgs~DGsVrIWD 294 (1072)
++|++ |.+++||+........+..+..+ ....+.|.-.-|+++. ++.+.+|.
T Consensus 243 ~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 243 FSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred EeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceecee
Confidence 88865 45999999887776666655444 3344455544455553 45567773
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-25 Score=258.49 Aligned_cols=282 Identities=22% Similarity=0.365 Sum_probs=248.9
Q ss_pred EEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001472 10 EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89 (1072)
Q Consensus 10 ~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~t 89 (1072)
++.||...|.+++++.+. .+++ .+..+.++||+..+.+++.++... .+.+..|-|.++++++|...|.+.+||+.+
T Consensus 368 ~~~GHR~dVRsl~vS~d~-~~~~-Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDS-ILLA-SGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeccchhheeEEEeecCc-eeee-ecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 578999999999999986 4444 445679999999999999998753 889999999999999999999999999999
Q ss_pred CeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-----Ce--EE------EEEecCCCCeEEEEEcCCCCE
Q 001472 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK-----KG--CI------HTYKGHTRGINTIRFTPDGRW 156 (1072)
Q Consensus 90 gk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrt-----gk--~v------~~l~~h~~~VtsLafSPDG~~ 156 (1072)
...+.++..|.+.|+.++.+||++.+++|+.|.+|++||+.- +. .+ .++. -...|.|+.+||||++
T Consensus 444 ~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 444 ASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKL 522 (888)
T ss_pred hhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcE
Confidence 999999999999999999999999999999999999999741 11 11 1122 3457999999999999
Q ss_pred EEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeC
Q 001472 157 VVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHP 236 (1072)
Q Consensus 157 LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSP 236 (1072)
|+++-.|.+++||-+.+.+....+.+|.-+|.|+.++||++++++|+.|..|++|-++-|.+-..+.+|...|.++.|.|
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P 602 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP 602 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEE-EECCcEEEEEecCCeeecccccCCCe-eeeEEecCCCEEEEEEcCCeEEEEEcC
Q 001472 237 DGRTLFS-GFDDNLKVYSWEPVICHDSVDMGWST-LGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 237 DG~~Las-Gsdg~I~Vwd~~s~~~~~~l~~~~s~-i~~l~spDGk~LAsgs~DGsVrIWDld 296 (1072)
+...+++ |-|+.++-||-+...+...++.+... .+.+.+|+|.++++++.|.+|++|.-+
T Consensus 603 ~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 603 KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 8777776 45777999999998888888766544 455667999999999999999999654
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=235.67 Aligned_cols=286 Identities=20% Similarity=0.253 Sum_probs=242.9
Q ss_pred EEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001472 10 EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89 (1072)
Q Consensus 10 ~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~t 89 (1072)
.+.||..+++.|.|+.+| .+|++++.|....+|-..+|+.+.++.+|.+.|+|++.+.+.+++++|+.|.++++||+.+
T Consensus 5 ~l~GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCC-cEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 478999999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEeCCCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEECC-------CCeEEEEEecCCCCeEEEEEcCCCCEE
Q 001472 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCM-----DTNLKIWDIR-------KKGCIHTYKGHTRGINTIRFTPDGRWV 157 (1072)
Q Consensus 90 gk~i~tl~~h~~~VtsLafSPdg~~LaSgs~-----DGsI~IWDlr-------tgk~v~~l~~h~~~VtsLafSPDG~~L 157 (1072)
|+++..++ ....|..+.|+.+|++++.+.. .+.|.++|++ ...++..+..+...++.+.|.|-+++|
T Consensus 84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 99999988 5788999999999998877754 3679999998 445677777788999999999999999
Q ss_pred EEEecCCeEEEEECCCCc-eEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeC
Q 001472 158 VSGGFDNVVKVWDLTAGK-LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHP 236 (1072)
Q Consensus 158 aTGS~DGsI~IWDl~tgk-~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSP 236 (1072)
++|..+|.|.+||+++|+ .+.....|...|+.|++++|..++++++.|.+-++||..+.+.++++... .+|++.+++|
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-~PvN~aaisP 241 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-RPVNTAAISP 241 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec-ccccceeccc
Confidence 999999999999999985 45555788999999999999999999999999999999999998888654 7899999999
Q ss_pred CCCEEEEEECCc-EEEE--EecCCe------------eecccccCCCeee-eEEecCCCEEEEEEcCCeEEEEEcCCC
Q 001472 237 DGRTLFSGFDDN-LKVY--SWEPVI------------CHDSVDMGWSTLG-DLCINDGKLLGCSFYRNSVGIWVADVS 298 (1072)
Q Consensus 237 DG~~LasGsdg~-I~Vw--d~~s~~------------~~~~l~~~~s~i~-~l~spDGk~LAsgs~DGsVrIWDlds~ 298 (1072)
-..+++.|+... .-|- +-+.++ ....+..++.++. ..++|+|+..++|+.||.|++...+..
T Consensus 242 ~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 242 LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 877777754322 1111 111111 1223455555554 566799999999999999999876643
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=233.70 Aligned_cols=276 Identities=20% Similarity=0.286 Sum_probs=245.1
Q ss_pred EEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEE--eeCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEE
Q 001472 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMS--LCGLSSPVDSVAFDS-AEVLVLAGASTGVIKLW 85 (1072)
Q Consensus 9 ~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~s--l~~hs~~ItsLafSP-dG~~LatGS~DGsI~IW 85 (1072)
+++.+|...|.+++|+.+| ..|++|+.|+++.+|++........ ..+|...|..++|+| +...|++++.|..|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccC-ceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 5688999999999999999 8999999999999999977655443 468899999999998 56789999999999999
Q ss_pred EcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCe
Q 001472 86 DLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNV 165 (1072)
Q Consensus 86 Dl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGs 165 (1072)
|++.++++..+....+.+ -+.|+|+|.++++++.|..|.+.|.++.+.....+ ....+..++|+.++.+|+.....|.
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCce
Confidence 999999998887655555 48999999999999999999999999888777665 4456888999988888777777899
Q ss_pred EEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEE
Q 001472 166 VKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF 245 (1072)
Q Consensus 166 I~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGs 245 (1072)
|.|.....-+++..+++|.....|+.|+|+|++||+|+.|..+.+||+...-+...+..+.-+|+.+.|+.||++|++++
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999998
Q ss_pred CCc-EEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcC
Q 001472 246 DDN-LKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYR 287 (1072)
Q Consensus 246 dg~-I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~D 287 (1072)
++. |-|-..+++.....++.........|.|...+||.+..|
T Consensus 251 EDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence 775 777777888877778888888889999999999888755
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-27 Score=263.70 Aligned_cols=311 Identities=19% Similarity=0.273 Sum_probs=268.3
Q ss_pred EeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001472 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK 132 (1072)
Q Consensus 53 sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtg 132 (1072)
.+.-.....+.+.|+.+|++|+.|+..|.|..+||.++++...+. -...|.++.|..+.++||++ +...++||| ..|
T Consensus 124 ~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~G 200 (545)
T KOG1272|consen 124 DLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNG 200 (545)
T ss_pred cccccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEec-CCC
Confidence 333335566889999999999999999999999999999998887 56789999999999988887 678899999 678
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEE
Q 001472 133 GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWD 212 (1072)
Q Consensus 133 k~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWD 212 (1072)
..++.++.+. .|..+.|.|..-+|++++..|.++..|+.+|+++..+....+.+..++-+|-...+.+|..+|+|.+|.
T Consensus 201 tElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 201 TELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWS 279 (545)
T ss_pred cEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecC
Confidence 8899998664 699999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred CCCCcEEEeeCCCCCCeEEEEEeCCCCEEEE-EECCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCCeEE
Q 001472 213 LETFELIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVG 291 (1072)
Q Consensus 213 l~tge~i~~~~~h~~~VtsIafSPDG~~Las-Gsdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVr 291 (1072)
....+++..+..|.++|.+|++.++|+|+++ |.|..++|||++.......+... .+...+..++..+||++ .+..|.
T Consensus 280 P~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp-~~a~~ls~SqkglLA~~-~G~~v~ 357 (545)
T KOG1272|consen 280 PNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP-HPASNLSLSQKGLLALS-YGDHVQ 357 (545)
T ss_pred CCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC-CCccccccccccceeee-cCCeee
Confidence 9999999999999999999999999999998 56778999999987765555542 33344445666677776 566799
Q ss_pred EEE-c-C--CCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcceEEeecCCcccceEEEeecCCCCccc-
Q 001472 292 IWV-A-D--VSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDSTGGKPV- 366 (1072)
Q Consensus 292 IWD-l-d--s~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD~et~eI~~i~iDs~gGepv- 366 (1072)
||. . . .....+|... .-.+.|..+.|+|..+ ++.+|+..|+..+++|+ +|||+
T Consensus 358 iw~d~~~~s~~~~~pYm~H---~~~~~V~~l~FcP~ED-----vLGIGH~~G~tsilVPG--------------sGePN~ 415 (545)
T KOG1272|consen 358 IWKDALKGSGHGETPYMNH---RCGGPVEDLRFCPYED-----VLGIGHAGGITSILVPG--------------SGEPNY 415 (545)
T ss_pred eehhhhcCCCCCCcchhhh---ccCcccccceeccHHH-----eeeccccCCceeEeccC--------------CCCCCc
Confidence 994 2 2 2233455532 2345999999999999 99999999999999999 99999
Q ss_pred eeeeecCCCCCCcCCCCChhhhhhh
Q 001472 367 ASQKIGPLNSPKVVPPLDSEEISDL 391 (1072)
Q Consensus 367 ~~~~~sP~~s~k~~~~~~~~~l~~~ 391 (1072)
|....+||+++|||++.|++.||+.
T Consensus 416 Ds~e~nPfetrKQRqE~EVr~LLeK 440 (545)
T KOG1272|consen 416 DSLEDNPFETRKQRQEKEVRSLLEK 440 (545)
T ss_pred chhccCcchhhhHHhHHHHHHHHhh
Confidence 9999999999999999999999986
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=245.71 Aligned_cols=288 Identities=15% Similarity=0.233 Sum_probs=236.9
Q ss_pred eEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC---eeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 001472 50 ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES---KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKI 126 (1072)
Q Consensus 50 ~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tg---k~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~I 126 (1072)
..+.+..|...|+-+.||++|+|||+++.|.+..+|++... +..+++.+|..+|..+.|+||.++|++|+.+..+.+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 34556789999999999999999999999999999987543 457788899999999999999999999999999999
Q ss_pred EECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecC-CceEEEEEcCCCcEEEEEEC
Q 001472 127 WDIRKKGCIHTYKG-HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE-GHIRSIDFHPLEFLLATGSA 204 (1072)
Q Consensus 127 WDlrtgk~v~~l~~-h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~-g~ItsLafSPdg~lLaTgS~ 204 (1072)
||+.+|.+.+.+.. +...+.+++|.|||..+++|+.|+.|..||+. |.....+++.. ..|.+++..+||+++++.+.
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 99999998888763 35679999999999999999999999999986 55555555433 55999999999999999999
Q ss_pred CCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEE-ECCcEEEEEecCCeeecccccCC---CeeeeEEe-cCCC
Q 001472 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDMGW---STLGDLCI-NDGK 279 (1072)
Q Consensus 205 DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasG-sdg~I~Vwd~~s~~~~~~l~~~~---s~i~~l~s-pDGk 279 (1072)
|..|++|+..+......+ ....+|++++.|.||+++++. .+..+.+||++.......+..+. ..+..+|- .+..
T Consensus 375 d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred ccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcc
Confidence 999999999876555433 344789999999999999986 56779999999766655554332 22232232 4668
Q ss_pred EEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcceEEeecC
Q 001472 280 LLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPD 347 (1072)
Q Consensus 280 ~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD 347 (1072)
++++|+.|+.|+||+...+...... .+|...|++|+|+|-..+ ..+.+..+|.++++-|+
T Consensus 454 fiaSGSED~kvyIWhr~sgkll~~L----sGHs~~vNcVswNP~~p~----m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISGKLLAVL----SGHSKTVNCVSWNPADPE----MFASASDDGTIRIWGPS 513 (519)
T ss_pred eEEecCCCceEEEEEccCCceeEee----cCCcceeeEEecCCCCHH----HhhccCCCCeEEEecCC
Confidence 9999999999999998777665554 688999999999998886 45566777777777665
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-24 Score=248.12 Aligned_cols=310 Identities=20% Similarity=0.377 Sum_probs=265.0
Q ss_pred ceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 001472 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1072)
Q Consensus 6 k~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IW 85 (1072)
..+-.|.||...|+++.|...| ..|++|+.|+.|.+||+-...-...+.+|+..|+..-|..+.+++++.+.|+.|++|
T Consensus 98 ~~~~tfngHK~AVt~l~fd~~G-~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~W 176 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKFDKIG-TRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFW 176 (888)
T ss_pred ceeeeecccccceEEEEEcccC-ceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEE
Confidence 5566799999999999999999 889999999999999998888889999999999999999989999999999999999
Q ss_pred EcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-----------------------------------
Q 001472 86 DLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR----------------------------------- 130 (1072)
Q Consensus 86 Dl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlr----------------------------------- 130 (1072)
|+.+..+..+.-.|.+.|+.+++++ +.+++++.|+.+.+|++.
T Consensus 177 dL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~ 254 (888)
T KOG0306|consen 177 DLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDF 254 (888)
T ss_pred ecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecC
Confidence 9999999999999999999999996 788999999999999881
Q ss_pred CCe-----------------------------------------------------------------------------
Q 001472 131 KKG----------------------------------------------------------------------------- 133 (1072)
Q Consensus 131 tgk----------------------------------------------------------------------------- 133 (1072)
+..
T Consensus 255 s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~ 334 (888)
T KOG0306|consen 255 SDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGT 334 (888)
T ss_pred cccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCc
Confidence 000
Q ss_pred E------------E------------------EEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeec
Q 001472 134 C------------I------------------HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH 183 (1072)
Q Consensus 134 ~------------v------------------~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h 183 (1072)
. . ..+.+|...|.+++++.+...+++|+ ++.|++|+..+.+++.++..
T Consensus 335 ~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~- 412 (888)
T KOG0306|consen 335 ENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC- 412 (888)
T ss_pred ceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc-
Confidence 0 0 00113555677888887776565554 67899999999999999974
Q ss_pred CCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEE-CCcEEEEEecCCee---
Q 001472 184 EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVIC--- 259 (1072)
Q Consensus 184 ~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGs-dg~I~Vwd~~s~~~--- 259 (1072)
+.+.+..|-|.++++++|...|.+.+||+.+...+..+..|.+.|++++.+||++.+++|+ |..+++|++.-...
T Consensus 413 -~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~g 491 (888)
T KOG0306|consen 413 -GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPG 491 (888)
T ss_pred -ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCc
Confidence 4788999999999999999999999999999999999999999999999999999999875 56799999863211
Q ss_pred ----------ecccccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCC
Q 001472 260 ----------HDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 260 ----------~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs 325 (1072)
...+.....+.+..++|||++|+++--|++|+||-+++-+..--. .+|+-+|.|+..|||++
T Consensus 492 t~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL----YGHkLPV~smDIS~DSk 563 (888)
T KOG0306|consen 492 TQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL----YGHKLPVLSMDISPDSK 563 (888)
T ss_pred ccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee----cccccceeEEeccCCcC
Confidence 134556677888889999999999999999999998865433322 78999999999999999
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-24 Score=238.95 Aligned_cols=345 Identities=17% Similarity=0.283 Sum_probs=276.2
Q ss_pred eEEEEecCCCCeEEEEEecCCCcEEEEEECCC--------eEEEEECCCCceEEEeeCCCCCeEEEEEcC--CCCEEEEE
Q 001472 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQ--------KVNLWAIGKPTALMSLCGLSSPVDSVAFDS--AEVLVLAG 76 (1072)
Q Consensus 7 ~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DG--------tV~IWDl~t~~~l~sl~~hs~~ItsLafSP--dG~~LatG 76 (1072)
..+.+.||...|.|++++|+. -.+++|...| .++|||..+...+..+......|.|++|++ .|.+|+..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdr-i~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~v 174 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDR-IRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAV 174 (626)
T ss_pred hcccccCCCCceEEEeecCCc-eeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEe
Confidence 346789999999999999996 5667676555 499999988888888888889999999997 45566554
Q ss_pred E--cCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE---ec-CCCCeEEEEE
Q 001472 77 A--STGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY---KG-HTRGINTIRF 150 (1072)
Q Consensus 77 S--~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l---~~-h~~~VtsLaf 150 (1072)
. .+..+.+||++.+......+..++.|....|+|.+..+++.+..|++++|+.+.+...... .. ....|.|++|
T Consensus 175 D~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F 254 (626)
T KOG2106|consen 175 DDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF 254 (626)
T ss_pred cCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEE
Confidence 3 3567999999998888888888899999999998887777788999999999887655432 22 2356999999
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEe--eCCCCCC
Q 001472 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS--TRPEVTG 228 (1072)
Q Consensus 151 SPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~--~~~h~~~ 228 (1072)
.++|. +++|..+|.|.||+..+.+..+....|++.|.+++...+|.+|- |+.|..|..|| ...+.+.. +....++
T Consensus 255 ~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~elPe~~G~ 331 (626)
T KOG2106|consen 255 LENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETELPEQFGP 331 (626)
T ss_pred cCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecc-ccccccccccCchhcCC
Confidence 99997 88999999999999988888887779999999999999998776 99999999999 44444333 3344567
Q ss_pred eEEEEEeCCCCEEEEEECCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCC
Q 001472 229 VHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAP 308 (1072)
Q Consensus 229 VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~ 308 (1072)
|+.++=...+ +++..+.+.|..=.++.......+-.+....+.+..|+...+++++.|+.+++|+ ..++.+..
T Consensus 332 iRtv~e~~~d-i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~---- 404 (626)
T KOG2106|consen 332 IRTVAEGKGD-ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK---- 404 (626)
T ss_pred eeEEecCCCc-EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE----
Confidence 8877654433 4444455666666677666665555666677777778999999999999999998 34444443
Q ss_pred CCCCCCeeEEEECCCCCccceEEEEEeccCcceEEeecCCcccceEEEeecCCCCccceeeeecCC
Q 001472 309 EPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDSTGGKPVASQKIGPL 374 (1072)
Q Consensus 309 ~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD~et~eI~~i~iDs~gGepv~~~~~sP~ 374 (1072)
....++.|+.|+|.| +++.|...| +|++.|.++..++.++.| ++|+++++|+|-
T Consensus 405 -~~~d~~~~~~fhpsg------~va~Gt~~G--~w~V~d~e~~~lv~~~~d---~~~ls~v~ysp~ 458 (626)
T KOG2106|consen 405 -IIEDPAECADFHPSG------VVAVGTATG--RWFVLDTETQDLVTIHTD---NEQLSVVRYSPD 458 (626)
T ss_pred -EecCceeEeeccCcc------eEEEeeccc--eEEEEecccceeEEEEec---CCceEEEEEcCC
Confidence 346788999999977 367888888 899999999999999998 999999999986
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-25 Score=263.09 Aligned_cols=288 Identities=19% Similarity=0.375 Sum_probs=215.5
Q ss_pred EEEEe-cCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCC----------CCCeEEEEEcC---CCC--
Q 001472 8 LQEFV-AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGL----------SSPVDSVAFDS---AEV-- 71 (1072)
Q Consensus 8 I~~L~-gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~h----------s~~ItsLafSP---dG~-- 71 (1072)
.+.+. +|.+.|+|+.|++|| +|||+||.||.|+||.+...+....-.+. ...+..+.-++ .++
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred eeccccccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 45677 999999999999999 99999999999999998542221100000 00011111111 011
Q ss_pred EEEEEEcCCeEEEEEcC----CCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEE
Q 001472 72 LVLAGASTGVIKLWDLE----ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINT 147 (1072)
Q Consensus 72 ~LatGS~DGsI~IWDl~----tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~Vts 147 (1072)
..-.+..... .+.+.. ..++++.+.+|.+.|.++.|+. .++|++++.|.+|++|++....|+..|. |...|+|
T Consensus 338 ~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 338 SSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTC 414 (712)
T ss_pred ccccccCCcc-ccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEE
Confidence 1111112222 122211 2467788999999999999996 5589999999999999999999999998 9999999
Q ss_pred EEEcC-CCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCC--
Q 001472 148 IRFTP-DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP-- 224 (1072)
Q Consensus 148 LafSP-DG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~-- 224 (1072)
++|+| |.+||++|+.||.|+||++...+.+.-... ..-|++++|.|||++.++|+.+|.+++|+....+.......
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 99999 888999999999999999987776655554 47799999999999999999999999999987665543321
Q ss_pred ------CCCCeEEEEEeCCC--CEEEEEECCcEEEEEecCCeeeccc---ccCCCeeeeEEecCCCEEEEEEcCCeEEEE
Q 001472 225 ------EVTGVHAITFHPDG--RTLFSGFDDNLKVYSWEPVICHDSV---DMGWSTLGDLCINDGKLLGCSFYRNSVGIW 293 (1072)
Q Consensus 225 ------h~~~VtsIafSPDG--~~LasGsdg~I~Vwd~~s~~~~~~l---~~~~s~i~~l~spDGk~LAsgs~DGsVrIW 293 (1072)
....|+.+.|.|.. +.|++..|..|+|||.........+ ......+.+.++.||++|++++.|..|+||
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 12369999999754 3788888999999999655544333 334456677788899999999999999999
Q ss_pred EcCCCce
Q 001472 294 VADVSHV 300 (1072)
Q Consensus 294 Dlds~~l 300 (1072)
+.+....
T Consensus 574 ~~~~~~~ 580 (712)
T KOG0283|consen 574 KNDSFNS 580 (712)
T ss_pred eCCCCcc
Confidence 9865443
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=249.63 Aligned_cols=248 Identities=20% Similarity=0.316 Sum_probs=199.7
Q ss_pred CCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceE-------------EEeeCCCCCeEEEEEcC-CCCEEEEEEcC
Q 001472 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTAL-------------MSLCGLSSPVDSVAFDS-AEVLVLAGAST 79 (1072)
Q Consensus 14 Hsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l-------------~sl~~hs~~ItsLafSP-dG~~LatGS~D 79 (1072)
|-..|.....++++ ..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++|+.|
T Consensus 19 ~~~~i~~~~~~~d~-~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 19 HFLNVTPSTALWDC-SNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred ceeccccccccCCC-CCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 34566666777776 34566666666677765333221 23678999999999999 88999999999
Q ss_pred CeEEEEEcCCC-------eeEEEEeCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEc
Q 001472 80 GVIKLWDLEES-------KMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFT 151 (1072)
Q Consensus 80 GsI~IWDl~tg-------k~i~tl~~h~~~VtsLafSPdg-~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafS 151 (1072)
|.|++||+.++ ..+..+.+|...|.+++|+|++ ++|++|+.|+.|+|||+.++..+..+..|...|.+++|+
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEE
Confidence 99999999765 3467788999999999999985 699999999999999999999999999999999999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceEEEeeecCCc-eEEEEEcCCCcEEEEEE----CCCeEEEEECCCCc-EEEeeCCC
Q 001472 152 PDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGH-IRSIDFHPLEFLLATGS----ADRTVKFWDLETFE-LIGSTRPE 225 (1072)
Q Consensus 152 PDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~-ItsLafSPdg~lLaTgS----~DGtIrIWDl~tge-~i~~~~~h 225 (1072)
|+|.+|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+++.. .+.....+
T Consensus 178 pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d 257 (493)
T PTZ00421 178 LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD 257 (493)
T ss_pred CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC
Confidence 99999999999999999999999999988888765 45678999887777654 47899999998754 33333222
Q ss_pred -CCCeEEEEEeCCCCEEEEEE--CCcEEEEEecCCeeecc
Q 001472 226 -VTGVHAITFHPDGRTLFSGF--DDNLKVYSWEPVICHDS 262 (1072)
Q Consensus 226 -~~~VtsIafSPDG~~LasGs--dg~I~Vwd~~s~~~~~~ 262 (1072)
...+....|++++.+|++|+ |+.|++|++........
T Consensus 258 ~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 258 QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 34566678999999988764 77899999987765443
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=224.43 Aligned_cols=269 Identities=20% Similarity=0.286 Sum_probs=229.8
Q ss_pred eEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001472 50 ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDI 129 (1072)
Q Consensus 50 ~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDl 129 (1072)
.+..+..+.++|.++.|+-+|+|.++++.|.+|++|+...|.+++++.+|...|..++.+.|+..|++|+.|..|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCC--ceEEEeeecCCceEEEEEcCCCcEEEEEECCCe
Q 001472 130 RKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAG--KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207 (1072)
Q Consensus 130 rtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tg--k~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGt 207 (1072)
.+|+.++.+.+|...|+.+.|+.+...+++|+.|..+++||.++. ++++.+......|.++... +..|++|+.||+
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt 166 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT 166 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence 999999999999999999999999999999999999999999764 6788888777889999886 677999999999
Q ss_pred EEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEE-CCcEEEEEecCCeeecccccCCCe---eeeEEecCCCEEEE
Q 001472 208 VKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWST---LGDLCINDGKLLGC 283 (1072)
Q Consensus 208 IrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGs-dg~I~Vwd~~s~~~~~~l~~~~s~---i~~l~spDGk~LAs 283 (1072)
++.||++.|.......+ .+|+++.|++||+..++++ ++.+++.|-++++....+..+... +.+.+......+++
T Consensus 167 vRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~s 244 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFS 244 (307)
T ss_pred EEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEe
Confidence 99999999988766654 4799999999999988865 667999999998887776554322 22333345568999
Q ss_pred EEcCCeEEEEEcCCCceeeeecCCCCCCCC-CeeEEEECCCCCc
Q 001472 284 SFYRNSVGIWVADVSHVEPYGVGAPEPDQS-ICTEVKFNPPGSH 326 (1072)
Q Consensus 284 gs~DGsVrIWDlds~~l~~~~v~~~~~~~~-~ItsVaFSPDGs~ 326 (1072)
|+.||.|.+||+-...+..-. ..+.. .+.++.++|--..
T Consensus 245 gSEDG~Vy~wdLvd~~~~sk~----~~~~~v~v~dl~~hp~~~~ 284 (307)
T KOG0316|consen 245 GSEDGKVYFWDLVDETQISKL----SVVSTVIVTDLSCHPTMDD 284 (307)
T ss_pred ccCCceEEEEEeccceeeeee----ccCCceeEEeeecccCccc
Confidence 999999999998655543332 22333 4889999997664
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-26 Score=243.79 Aligned_cols=280 Identities=19% Similarity=0.355 Sum_probs=242.2
Q ss_pred cCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEE--------eeCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001472 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMS--------LCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1072)
Q Consensus 13 gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~s--------l~~hs~~ItsLafSPdG~~LatGS~DGsI~I 84 (1072)
|..+.+-|..|+||| +||++|+.||.|.+|++.+|+.... +.-+..+|.|+.|+.|...|++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 556789999999999 8999999999999999988765443 3456789999999999999999999999999
Q ss_pred EEcCCCeeEEEEe-CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecC
Q 001472 85 WDLEESKMVRTLT-GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163 (1072)
Q Consensus 85 WDl~tgk~i~tl~-~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~D 163 (1072)
|.+++|.+++.+. .|...|+|+.|+.|+..+++++.|..++|.-+++|+++..+.+|...|+...|.+||.++++++.|
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 9999999999887 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCceEEEeee--cCCceEEEEEcC-CCcEEEEEECCCeEEEEECCCCcEEEeeCC---CCCCeEEEEEeCC
Q 001472 164 NVVKVWDLTAGKLLHDFKF--HEGHIRSIDFHP-LEFLLATGSADRTVKFWDLETFELIGSTRP---EVTGVHAITFHPD 237 (1072)
Q Consensus 164 GsI~IWDl~tgk~i~~~~~--h~g~ItsLafSP-dg~lLaTgS~DGtIrIWDl~tge~i~~~~~---h~~~VtsIafSPD 237 (1072)
|+|++|+..+.+++.+|+. .+.+|.++-.-| +...++++....+|+|.++. |+.+..+.. ..+...+.+++|.
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpk 448 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPK 448 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCC
Confidence 9999999999999988874 445677877777 45678888888999999986 666666543 3456778889999
Q ss_pred CCEEEE-EECCcEEEEEecCCeeecccccC-CCeeeeEEecCCCEEEEEEcCCeEEEEE
Q 001472 238 GRTLFS-GFDDNLKVYSWEPVICHDSVDMG-WSTLGDLCINDGKLLGCSFYRNSVGIWV 294 (1072)
Q Consensus 238 G~~Las-Gsdg~I~Vwd~~s~~~~~~l~~~-~s~i~~l~spDGk~LAsgs~DGsVrIWD 294 (1072)
|.|+.+ |.|+.++.|...++.....+..+ ..+++..-.|..++||+-+.||.+++|.
T Consensus 449 GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999988 55666888888888877666544 3455556668889999999999999994
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=250.79 Aligned_cols=272 Identities=24% Similarity=0.375 Sum_probs=235.2
Q ss_pred EEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeC-
Q 001472 20 CISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG- 98 (1072)
Q Consensus 20 ~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~- 98 (1072)
-++|+..+ .|++|.. ..|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+
T Consensus 182 lldWss~n--~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 182 LLDWSSAN--VLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred HhhcccCC--eEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 45777554 6666654 5799999988876555555589999999999999999999999999999999999999998
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceE
Q 001472 99 HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHT-YKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLL 177 (1072)
Q Consensus 99 h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~-l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i 177 (1072)
|...|-+++|. +..+.+|+.+|.|.++|++..+.... +.+|...|+.+.|++|+.+|++|+.|+.+.|||.....+.
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 99999999998 77899999999999999998776555 7889999999999999999999999999999999888899
Q ss_pred EEeeecCCceEEEEEcCC-CcEEEEEE--CCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEE---ECCcEEE
Q 001472 178 HDFKFHEGHIRSIDFHPL-EFLLATGS--ADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG---FDDNLKV 251 (1072)
Q Consensus 178 ~~~~~h~g~ItsLafSPd-g~lLaTgS--~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasG---sdg~I~V 251 (1072)
..+..|.+.|.+++|+|. ..+||+|+ .|++|++||..++..+..+... ..|.++.|++..+-|+++ +++.|.|
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg-sQVcsL~Wsk~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG-SQVCSLIWSKKYKELLSTHGYSENQITL 415 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC-CceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence 999999999999999994 67888876 5999999999999988777544 679999999999888875 4567999
Q ss_pred EEecCCeeecccccCC-CeeeeEEecCCCEEEEEEcCCeEEEEEcCC
Q 001472 252 YSWEPVICHDSVDMGW-STLGDLCINDGKLLGCSFYRNSVGIWVADV 297 (1072)
Q Consensus 252 wd~~s~~~~~~l~~~~-s~i~~l~spDGk~LAsgs~DGsVrIWDlds 297 (1072)
|++.+......+..+. .++...++|||..+++|+.|.++++|++-.
T Consensus 416 w~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 416 WKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred EeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 9999877766665443 456667789999999999999999998754
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=255.52 Aligned_cols=278 Identities=26% Similarity=0.470 Sum_probs=244.2
Q ss_pred CCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEE-eeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCee
Q 001472 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMS-LCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM 92 (1072)
Q Consensus 14 Hsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~s-l~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~ 92 (1072)
|...+.|..|+ + .++++++.|++|++||..++..+.. +.+|.+.|++++|...+.+|++|+.|.++++||..+|++
T Consensus 207 ~~~~~~~~q~~-~--~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 207 DDHVVLCLQLH-D--GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred Ccchhhhheee-c--CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 56788999998 3 3799999999999999999998888 999999999999988889999999999999999999999
Q ss_pred EEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECC
Q 001472 93 VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172 (1072)
Q Consensus 93 i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~ 172 (1072)
...+.+|.+.|.++... +.++++|+.|.+|++|++.++.+++.+.+|..+|.++.++ +.++++|+.||.|++||+.
T Consensus 284 ~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 99999999999998876 5678888999999999999999999999999999999998 7799999999999999999
Q ss_pred CCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCC-cEEEeeCCCCCCeEEEEEeCCCCEEEEE-ECCcEE
Q 001472 173 AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF-ELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLK 250 (1072)
Q Consensus 173 tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tg-e~i~~~~~h~~~VtsIafSPDG~~LasG-sdg~I~ 250 (1072)
+++++..+.+|.+.|.++.+... ..+++|+.|++|++||+.++ +++..+..|..-+..+.+ .+++|+++ .|+.|+
T Consensus 360 ~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik 436 (537)
T KOG0274|consen 360 TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIK 436 (537)
T ss_pred hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEE
Confidence 99999999999999999988765 89999999999999999999 999999999888866655 45777775 567799
Q ss_pred EEEecCCeeecccccC-CCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceee
Q 001472 251 VYSWEPVICHDSVDMG-WSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEP 302 (1072)
Q Consensus 251 Vwd~~s~~~~~~l~~~-~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~ 302 (1072)
+||...+.+...+... ...+..+.. ....+++++.||.+.+||+..+....
T Consensus 437 ~WD~~~~~~~~~~~~~~~~~v~~l~~-~~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 437 LWDAEEGECLRTLEGRHVGGVSALAL-GKEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred EeecccCceeeeeccCCcccEEEeec-CcceEEEEecCCeeEEEecccCchhh
Confidence 9999999999888774 222222222 24778888999999999998765543
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-24 Score=238.58 Aligned_cols=278 Identities=22% Similarity=0.354 Sum_probs=241.2
Q ss_pred CCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEE
Q 001472 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRT 95 (1072)
Q Consensus 16 g~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~t 95 (1072)
-.|.++...+.. ..+++|+.|..+.++|....+.+..+.+|...|+.+.|+++...+++++.|-.|+||..........
T Consensus 220 pgi~ald~~~s~-~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSS-SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCeeEEeecCCC-CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 468888888873 6899999999999999999999999999999999999999999999999999999999987777777
Q ss_pred EeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec--CCCCeEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 001472 96 LTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG--HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTA 173 (1072)
Q Consensus 96 l~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~--h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~t 173 (1072)
...|.++|+.+..+|.|.||++++.||+..+.|++++..+..... ..-.+++.+|+|||.+|.+|..||.|+|||+.+
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 888999999999999999999999999999999999998777664 234589999999999999999999999999999
Q ss_pred CceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCC-CCeEEEEEeCCCCEEEEEECCcEEEE
Q 001472 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEV-TGVHAITFHPDGRTLFSGFDDNLKVY 252 (1072)
Q Consensus 174 gk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~-~~VtsIafSPDG~~LasGsdg~I~Vw 252 (1072)
+..+..|.+|.++|..++|+.+|.+|++++.|+.|++||++..+...++.... .++.++.|+..|.+|+.+ ...++||
T Consensus 379 ~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy 457 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVY 457 (506)
T ss_pred ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-cceeEEE
Confidence 99999999999999999999999999999999999999999887766665433 479999999999999998 3446777
Q ss_pred Eec----CCeeecccccCCCeeee-EEecCCCEEEEEEcCCeEEEEEc
Q 001472 253 SWE----PVICHDSVDMGWSTLGD-LCINDGKLLGCSFYRNSVGIWVA 295 (1072)
Q Consensus 253 d~~----s~~~~~~l~~~~s~i~~-l~spDGk~LAsgs~DGsVrIWDl 295 (1072)
.+. ...+...+..+...... .|-...+++++++.|..++++.+
T Consensus 458 ~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 458 ICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 766 44555555544433333 44467889999999998888743
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=234.65 Aligned_cols=278 Identities=24% Similarity=0.448 Sum_probs=238.9
Q ss_pred ecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCC---CEEEEEEcCCeEEEEEcC
Q 001472 12 VAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE---VLVLAGASTGVIKLWDLE 88 (1072)
Q Consensus 12 ~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG---~~LatGS~DGsI~IWDl~ 88 (1072)
..|.+.|.++...+ .++++|++||.++|||. .|+....+.+|.++|..++|.... ..|++++.|.++++|.++
T Consensus 102 ~~hdDWVSsv~~~~---~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 102 FLHDDWVSSVKGAS---KWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred ccchhhhhhhcccC---ceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 46888999998873 58999999999999996 678889999999999999886433 359999999999999998
Q ss_pred CCee----EEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-------------------------CCeEEEEEe
Q 001472 89 ESKM----VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR-------------------------KKGCIHTYK 139 (1072)
Q Consensus 89 tgk~----i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlr-------------------------tgk~v~~l~ 139 (1072)
.+.. +....+|...|-++...++|..|++|+.|..|.||+.. .+.++..+.
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred CchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 7653 23334899999999999999999999999999999932 123456678
Q ss_pred cCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCc--
Q 001472 140 GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE-- 217 (1072)
Q Consensus 140 ~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge-- 217 (1072)
+|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+.+ ...+.++.++|..++|++|+.|..|++||.+++.
T Consensus 258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS 335 (423)
T ss_pred ccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCc
Confidence 9999999999998 56799999999999999999999888874 5679999999999999999999999999999753
Q ss_pred -EEEeeCCCCCCeEEEEEeCCCCEEEE-E-ECCcEEEEEecCCe-eecccccCCCeeeeEEecCCCEEEEEEcCCeEEEE
Q 001472 218 -LIGSTRPEVTGVHAITFHPDGRTLFS-G-FDDNLKVYSWEPVI-CHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIW 293 (1072)
Q Consensus 218 -~i~~~~~h~~~VtsIafSPDG~~Las-G-sdg~I~Vwd~~s~~-~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrIW 293 (1072)
....+.+|...|.++.|+|...++++ | .|+.+++||.+... ....+..++..+-.+-+.++.++++|+.|++|+|+
T Consensus 336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIF 415 (423)
T ss_pred eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEe
Confidence 35678899999999999998776665 3 68889999999876 67777777888888888999999999999999999
Q ss_pred Ec
Q 001472 294 VA 295 (1072)
Q Consensus 294 Dl 295 (1072)
..
T Consensus 416 ~~ 417 (423)
T KOG0313|consen 416 KG 417 (423)
T ss_pred cc
Confidence 54
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-22 Score=219.48 Aligned_cols=284 Identities=16% Similarity=0.166 Sum_probs=217.1
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEE-EEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEE
Q 001472 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLV-LAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVE 107 (1072)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~L-atGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLa 107 (1072)
.++++++.||.|++||+.+++.+..+..+. .+.+++|+|++..+ ++++.++.|.+||..+++....+..+.. +..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 578899999999999999888888877554 46789999999977 4566789999999999888777665433 56789
Q ss_pred EcCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCC-eEEEEECCCCceEEEeeecCC
Q 001472 108 FHPFGEFFASG-CMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN-VVKVWDLTAGKLLHDFKFHEG 185 (1072)
Q Consensus 108 fSPdg~~LaSg-s~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DG-sI~IWDl~tgk~i~~~~~h~g 185 (1072)
|+|+++.++++ +.++.|++||+.+++.+..+.. ...+.+++|+|+|.++++++.++ .+.+||..+++....+. ...
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~ 157 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQ 157 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCC
Confidence 99999977665 4589999999998887777763 33468899999999999888765 56788998887766554 234
Q ss_pred ceEEEEEcCCCcEEEEEE-CCCeEEEEECCCCcEEEeeCCCC-------CCeEEEEEeCCCCEEEEE--ECCcEEEEEec
Q 001472 186 HIRSIDFHPLEFLLATGS-ADRTVKFWDLETFELIGSTRPEV-------TGVHAITFHPDGRTLFSG--FDDNLKVYSWE 255 (1072)
Q Consensus 186 ~ItsLafSPdg~lLaTgS-~DGtIrIWDl~tge~i~~~~~h~-------~~VtsIafSPDG~~LasG--sdg~I~Vwd~~ 255 (1072)
.+.+++|+|++.+|++++ .++.|++||+.+++.+..+..+. .....++|+|+|++++++ .++.+.+||.+
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 467899999999886554 58999999999988766543221 123578899999986553 45679999998
Q ss_pred CCeeecccccCCCeeeeEEecCCCEEEEEE-cCCeEEEEEcCCCce-eeeecCCCCCCCCCeeEEEECC
Q 001472 256 PVICHDSVDMGWSTLGDLCINDGKLLGCSF-YRNSVGIWVADVSHV-EPYGVGAPEPDQSICTEVKFNP 322 (1072)
Q Consensus 256 s~~~~~~l~~~~s~i~~l~spDGk~LAsgs-~DGsVrIWDlds~~l-~~~~v~~~~~~~~~ItsVaFSP 322 (1072)
.......+..+..+....++++|++|+++. .+|.|.+||+..... ..+.. ...+..++|+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~------~~~~~~~~~~~ 300 (300)
T TIGR03866 238 TYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV------GRLPWGVVVRP 300 (300)
T ss_pred CCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc------ccccceeEeCC
Confidence 777665554455566777889999998764 689999999987664 33332 34456777765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-23 Score=246.53 Aligned_cols=261 Identities=18% Similarity=0.204 Sum_probs=200.5
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeE-------------EEEeCCCCCeEEEEEcC-CCCEEEEEeCCCeEE
Q 001472 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMV-------------RTLTGHKSNCTAVEFHP-FGEFFASGCMDTNLK 125 (1072)
Q Consensus 60 ~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i-------------~tl~~h~~~VtsLafSP-dg~~LaSgs~DGsI~ 125 (1072)
.|....+++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++|+.||.|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 3444555556555666666666666665433222 24678999999999999 788999999999999
Q ss_pred EEECCCC-------eEEEEEecCCCCeEEEEEcCCC-CEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCc
Q 001472 126 IWDIRKK-------GCIHTYKGHTRGINTIRFTPDG-RWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEF 197 (1072)
Q Consensus 126 IWDlrtg-------k~v~~l~~h~~~VtsLafSPDG-~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~ 197 (1072)
+||+..+ ..+..+.+|...|.+++|+|++ .+|++|+.|+.|++||+.+++.+..+..|...|.+++|+|+|.
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS 181 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC
Confidence 9999765 3467788999999999999975 6899999999999999999999999999999999999999999
Q ss_pred EEEEEECCCeEEEEECCCCcEEEeeCCCCCC-eEEEEEeCCCCEEEEEE-----CCcEEEEEecCCe-eecccc--cCCC
Q 001472 198 LLATGSADRTVKFWDLETFELIGSTRPEVTG-VHAITFHPDGRTLFSGF-----DDNLKVYSWEPVI-CHDSVD--MGWS 268 (1072)
Q Consensus 198 lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~-VtsIafSPDG~~LasGs-----dg~I~Vwd~~s~~-~~~~l~--~~~s 268 (1072)
+|++++.||.|++||+++++.+..+..|.+. +..+.|.+++..+++++ ++.|++||++... ...... ....
T Consensus 182 lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~ 261 (493)
T PTZ00421 182 LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA 261 (493)
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc
Confidence 9999999999999999999998888887654 45778999887777642 4679999997643 222222 2223
Q ss_pred eeeeEEecCCCEEEEEE-cCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCC
Q 001472 269 TLGDLCINDGKLLGCSF-YRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPP 323 (1072)
Q Consensus 269 ~i~~l~spDGk~LAsgs-~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPD 323 (1072)
.....+.+++++|++++ .||.|++||+..+....... .........++|.|.
T Consensus 262 ~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~---~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 262 LFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS---YSSVEPHKGLCMMPK 314 (493)
T ss_pred eEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee---ccCCCCCcceEeccc
Confidence 33455678999998887 59999999998665433221 233455677778773
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-25 Score=230.97 Aligned_cols=287 Identities=18% Similarity=0.269 Sum_probs=257.4
Q ss_pred EEEeeCCCCCeEEEEEcC---CCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 001472 51 LMSLCGLSSPVDSVAFDS---AEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIW 127 (1072)
Q Consensus 51 l~sl~~hs~~ItsLafSP---dG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IW 127 (1072)
.....+|..+|..++|+| +|-+|++++.||.-.+-+-++|.-+.++.+|.+.|+..+++.+...-++++.|-+-++|
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 345578999999999985 89999999999999888889999999999999999999999888888999999999999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCc-eEEEeeecCCceEEEEEcCCCcEEEEEECCC
Q 001472 128 DIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK-LLHDFKFHEGHIRSIDFHPLEFLLATGSADR 206 (1072)
Q Consensus 128 Dlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk-~i~~~~~h~g~ItsLafSPdg~lLaTgS~DG 206 (1072)
|.-+|..++.+. |..-|..++|+.|.++|++|+.+..++|||++..+ +..++.+|.+.|..+-|....+.++++..|+
T Consensus 87 ~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 87 DAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 999999999997 88889999999999999999999999999998764 5678889999999999999888999989999
Q ss_pred eEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEc
Q 001472 207 TVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFY 286 (1072)
Q Consensus 207 tIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~ 286 (1072)
+|++||.+++..+..+... .+|+++.++++|++|.++..++|.+||......++.+.+...+......|+..++++|+.
T Consensus 166 tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGge 244 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGE 244 (334)
T ss_pred ceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCc
Confidence 9999999999999887654 679999999999999999999999999999999999999888888888899999999999
Q ss_pred CCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcceEEeecC
Q 001472 287 RNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPD 347 (1072)
Q Consensus 287 DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD 347 (1072)
|+.++.||++++.-.... ..+|.++|.|+.|||||- +-++|..+|.++++...
T Consensus 245 d~~~~kfDy~TgeEi~~~---nkgh~gpVhcVrFSPdGE-----~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 245 DFKVYKFDYNTGEEIGSY---NKGHFGPVHCVRFSPDGE-----LYASGSEDGTIRLWQTT 297 (334)
T ss_pred ceEEEEEeccCCceeeec---ccCCCCceEEEEECCCCc-----eeeccCCCceEEEEEec
Confidence 999999999876543332 268899999999999999 77888888877776544
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=242.24 Aligned_cols=278 Identities=23% Similarity=0.333 Sum_probs=243.0
Q ss_pred CCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEE
Q 001472 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVR 94 (1072)
Q Consensus 15 sg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~ 94 (1072)
.+.|.+++|+|..+.-+|+.+. -.+.||+..+......+..+...++++.|..||++|++|...|.|+|||..+...++
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence 4789999999987665666554 469999998888777788888999999999999999999999999999977666778
Q ss_pred EEeCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC-CCEEEEEecCCeEEEEECC
Q 001472 95 TLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPD-GRWVVSGGFDNVVKVWDLT 172 (1072)
Q Consensus 95 tl~~h~~~VtsLafSPdg~-~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPD-G~~LaTGS~DGsI~IWDl~ 172 (1072)
.+..|..++..+.|+|+++ .|++|+.|+.+++||+.+......+.+|.+.|.|.+|+|- +.++++|+.||.|++||++
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR 184 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence 8899999999999999655 6778888899999999998876688999999999999995 4588999999999999999
Q ss_pred CC-ceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCC-cEEEeeCCCCCCeEEEEEeCCCCEEEEE-ECCcE
Q 001472 173 AG-KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF-ELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNL 249 (1072)
Q Consensus 173 tg-k~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tg-e~i~~~~~h~~~VtsIafSPDG~~LasG-sdg~I 249 (1072)
.. ..+.++. |..+|..+.+-|.|..+++++. ..|++||+.+| +.+..+..|...|+|+.+..++..|++| -|+.+
T Consensus 185 ~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~V 262 (487)
T KOG0310|consen 185 SLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHV 262 (487)
T ss_pred cCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccce
Confidence 87 6677776 8899999999999999999886 58999999965 4555556699999999999999988885 58889
Q ss_pred EEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCCeEEEEEc
Q 001472 250 KVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1072)
Q Consensus 250 ~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDl 295 (1072)
++|+....+....+.....++.+..+||++.++.|..+|.+.+-+.
T Consensus 263 KVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 263 KVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred EEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeeehh
Confidence 9999999999999999999999999999999999999998877643
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-23 Score=250.83 Aligned_cols=291 Identities=19% Similarity=0.322 Sum_probs=232.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEE--cCCeEEEEEcCC------------CeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCC
Q 001472 57 LSSPVDSVAFDSAEVLVLAGA--STGVIKLWDLEE------------SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122 (1072)
Q Consensus 57 hs~~ItsLafSPdG~~LatGS--~DGsI~IWDl~t------------gk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DG 122 (1072)
+...|.+++.+|+|..+++|+ .||.+.||+.+. .+.+.....|.+.|.|+.|+|||++||+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 345689999999999999999 899999998642 234566778999999999999999999999999
Q ss_pred eEEEEECCC------------------CeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecC
Q 001472 123 NLKIWDIRK------------------KGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE 184 (1072)
Q Consensus 123 sI~IWDlrt------------------gk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~ 184 (1072)
.|.||+... .+++..+.+|...|..++|+|++.+|++++.|++|.+|+..+.+.+..+.+|.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ 171 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence 999998762 12567788999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCC------CCeEEEEEeCCCCEEEEE--ECC---cEEEEE
Q 001472 185 GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEV------TGVHAITFHPDGRTLFSG--FDD---NLKVYS 253 (1072)
Q Consensus 185 g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~------~~VtsIafSPDG~~LasG--sdg---~I~Vwd 253 (1072)
+.|..+.|.|-|++|++-+.|++|++|.+.++...+.+..+. ..+..+.|+|||++|++. ..+ .+.|.+
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie 251 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE 251 (942)
T ss_pred ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence 999999999999999999999999999988877766654432 347899999999999985 222 377777
Q ss_pred ecCCeeecccccCCCeeeeEEe-c------C-------C----CEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCe
Q 001472 254 WEPVICHDSVDMGWSTLGDLCI-N------D-------G----KLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSIC 315 (1072)
Q Consensus 254 ~~s~~~~~~l~~~~s~i~~l~s-p------D-------G----k~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~I 315 (1072)
-++...-..+-.+..++.++.+ | . . ..+|+|+.|++|.||.. ....|+.+.+ .-....|
T Consensus 252 R~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T--~~~RPl~vi~-~lf~~SI 328 (942)
T KOG0973|consen 252 RGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT--ALPRPLFVIH-NLFNKSI 328 (942)
T ss_pred cCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec--CCCCchhhhh-hhhcCce
Confidence 6666654445444445544433 2 1 1 16889999999999964 6667777655 5557899
Q ss_pred eEEEECCCCCccceEEEEEeccCcceEEeecCCcccceEEEe
Q 001472 316 TEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIY 357 (1072)
Q Consensus 316 tsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD~et~eI~~i~ 357 (1072)
..++|||||- .++....+|. +....++..|+....
T Consensus 329 ~DmsWspdG~-----~LfacS~DGt--V~~i~Fee~ElG~~l 363 (942)
T KOG0973|consen 329 VDMSWSPDGF-----SLFACSLDGT--VALIHFEEKELGVAL 363 (942)
T ss_pred eeeeEcCCCC-----eEEEEecCCe--EEEEEcchHHhCccc
Confidence 9999999999 6666667773 444455555554433
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-24 Score=256.16 Aligned_cols=289 Identities=19% Similarity=0.311 Sum_probs=241.6
Q ss_pred EecC-CCCeEEEEEecCCCcEEEEEE--CCCeEEEEECCC------------CceEEEeeCCCCCeEEEEEcCCCCEEEE
Q 001472 11 FVAH-SANVNCISIGKKACRFLITGG--DDQKVNLWAIGK------------PTALMSLCGLSSPVDSVAFDSAEVLVLA 75 (1072)
Q Consensus 11 L~gH-sg~Vt~IafSPdg~~lLaTGs--~DGtV~IWDl~t------------~~~l~sl~~hs~~ItsLafSPdG~~Lat 75 (1072)
+.+| ...|.+|+.+|+| ..+++|+ .||.+.||+... .+.+.....|.+.|.|+.|++||.+||+
T Consensus 8 wv~H~~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred ccccCCeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee
Confidence 3344 4579999999999 8899999 899999997621 3445667789999999999999999999
Q ss_pred EEcCCeEEEEEcCC------------------CeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 001472 76 GASTGVIKLWDLEE------------------SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHT 137 (1072)
Q Consensus 76 GS~DGsI~IWDl~t------------------gk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~ 137 (1072)
|+.|+.|.||.... .+.+..+.+|...|..++|+|++.+|++++.|++|.|||.++.+.+..
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence 99999999998762 135677889999999999999999999999999999999999999999
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecC------CceEEEEEcCCCcEEEEEEC----CCe
Q 001472 138 YKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE------GHIRSIDFHPLEFLLATGSA----DRT 207 (1072)
Q Consensus 138 l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~------g~ItsLafSPdg~lLaTgS~----DGt 207 (1072)
+.+|.+.|..+.|.|-|+||++-+.|++|+||.+....+.+.+..+. ..+..+.|+|||.+|++... -.+
T Consensus 167 l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~ 246 (942)
T KOG0973|consen 167 LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKST 246 (942)
T ss_pred eecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcce
Confidence 99999999999999999999999999999999988777776665432 34788999999999998743 346
Q ss_pred EEEEECCCCcEEEeeCCCCCCeEEEEEeCC--------C-------C--EEEEE-ECCcEEEEEecCCeeecccc--cCC
Q 001472 208 VKFWDLETFELIGSTRPEVTGVHAITFHPD--------G-------R--TLFSG-FDDNLKVYSWEPVICHDSVD--MGW 267 (1072)
Q Consensus 208 IrIWDl~tge~i~~~~~h~~~VtsIafSPD--------G-------~--~LasG-sdg~I~Vwd~~s~~~~~~l~--~~~ 267 (1072)
+.|.+-.+++.-..+.+|.+++.++.|+|. | . .+|+| .|+.|.||......+..... ...
T Consensus 247 ~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~ 326 (942)
T KOG0973|consen 247 IAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK 326 (942)
T ss_pred eEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence 889998888888899999999999999982 1 1 34445 46679999986655544332 234
Q ss_pred CeeeeEEecCCCEEEEEEcCCeEEEEEcCCCce
Q 001472 268 STLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300 (1072)
Q Consensus 268 s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l 300 (1072)
.+....|++||..|++++.||+|.+..++.+.+
T Consensus 327 SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 327 SIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred ceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 667778889999999999999999998865543
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-25 Score=229.46 Aligned_cols=286 Identities=19% Similarity=0.299 Sum_probs=251.2
Q ss_pred EEEEecCCCCeEEEEEec---CCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001472 8 LQEFVAHSANVNCISIGK---KACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1072)
Q Consensus 8 I~~L~gHsg~Vt~IafSP---dg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~I 84 (1072)
.....||+.+|..++|+| +| .+|++++.||.-.+-+-+++..+.++.+|.+.|+...++.+....++++.|-+-+|
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 446789999999999975 66 89999999999999999999999999999999999999999888999999999999
Q ss_pred EEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEecC
Q 001472 85 WDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG-CIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163 (1072)
Q Consensus 85 WDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk-~v~~l~~h~~~VtsLafSPDG~~LaTGS~D 163 (1072)
||.-+|..+..+. |...|..++|+.|.++|++|+.+..++|||++..+ ....+.+|.+.|..+.|....+.|++...|
T Consensus 86 w~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd 164 (334)
T KOG0278|consen 86 WDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADD 164 (334)
T ss_pred hhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccC
Confidence 9999999988886 88899999999999999999999999999997654 567788999999999999988889999999
Q ss_pred CeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEE
Q 001472 164 NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243 (1072)
Q Consensus 164 GsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~Las 243 (1072)
+.|++||.+++..++.+. ...+|+++-++++|.+|.++. .+.|.+||..+...++.+... ..|.+..++|+..++++
T Consensus 165 ~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVa 241 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVA 241 (334)
T ss_pred CceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccCc-cccccccccCCCceEEe
Confidence 999999999999999988 567899999999999887665 478999999999988877654 56899999999888887
Q ss_pred EEC-CcEEEEEecCCeeeccc-ccC-CCeeeeEEecCCCEEEEEEcCCeEEEEEcCCC
Q 001472 244 GFD-DNLKVYSWEPVICHDSV-DMG-WSTLGDLCINDGKLLGCSFYRNSVGIWVADVS 298 (1072)
Q Consensus 244 Gsd-g~I~Vwd~~s~~~~~~l-~~~-~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~ 298 (1072)
|++ ..++.||+.++.....+ ..+ ..+.+..|+|||...++|+.||+|+||....+
T Consensus 242 Gged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 242 GGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred cCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 754 45889999988776664 333 35566678899999999999999999976544
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-23 Score=246.10 Aligned_cols=246 Identities=19% Similarity=0.286 Sum_probs=195.8
Q ss_pred EEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe--------EEEEEecCCCCeE
Q 001472 76 GASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPF-GEFFASGCMDTNLKIWDIRKKG--------CIHTYKGHTRGIN 146 (1072)
Q Consensus 76 GS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPd-g~~LaSgs~DGsI~IWDlrtgk--------~v~~l~~h~~~Vt 146 (1072)
|+.+|.|.+|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||.|++||+.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 556789999998887888889999999999999997 7899999999999999997642 3446778999999
Q ss_pred EEEEcCCCCE-EEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCC
Q 001472 147 TIRFTPDGRW-VVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPE 225 (1072)
Q Consensus 147 sLafSPDG~~-LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h 225 (1072)
+++|+|++.. |++++.|+.|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+..|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999999876 4688999999999999998877776 5678999999999999999999999999999999999989888
Q ss_pred CCCeEEE-----EEeCCCCEEEEEE-CC----cEEEEEecC-Ceeeccccc--CCCeeeeEEe-cCCCEEEEEEcCCeEE
Q 001472 226 VTGVHAI-----TFHPDGRTLFSGF-DD----NLKVYSWEP-VICHDSVDM--GWSTLGDLCI-NDGKLLGCSFYRNSVG 291 (1072)
Q Consensus 226 ~~~VtsI-----afSPDG~~LasGs-dg----~I~Vwd~~s-~~~~~~l~~--~~s~i~~l~s-pDGk~LAsgs~DGsVr 291 (1072)
.+.+... .|++++.+|++++ ++ .|+|||++. ..+...+.. ....+...+. ++|.++++|..|+.|+
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 7765432 3458888888754 43 599999985 334433322 2233333333 4588999999999999
Q ss_pred EEEcCCCceeeeecCCCCCCCCCeeEEEECCCCC
Q 001472 292 IWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 292 IWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs 325 (1072)
+|++..+.+..+.. ..+..+..+++|.|+-.
T Consensus 289 ~~e~~~~~~~~l~~---~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 289 YYQHSLGSIRKVNE---YKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEccCCcEEeecc---cccCCCccceEEccccc
Confidence 99997665444331 33556778889999554
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-23 Score=219.62 Aligned_cols=291 Identities=15% Similarity=0.212 Sum_probs=244.2
Q ss_pred EeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001472 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK 132 (1072)
Q Consensus 53 sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtg 132 (1072)
.+.+|..+++.+.|+.+|.+|.+++.|....||-..+|+.+.++.+|.+.|+|+....+.+++++|+.|.++++||+.+|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46789999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEec-----CCeEEEEECC-------CCceEEEeeecCCceEEEEEcCCCcEEE
Q 001472 133 GCIHTYKGHTRGINTIRFTPDGRWVVSGGF-----DNVVKVWDLT-------AGKLLHDFKFHEGHIRSIDFHPLEFLLA 200 (1072)
Q Consensus 133 k~v~~l~~h~~~VtsLafSPDG~~LaTGS~-----DGsI~IWDl~-------tgk~i~~~~~h~g~ItsLafSPdg~lLa 200 (1072)
+++..++ ...+|..+.|+.+|++++.... .+.|.++|++ ..++...+..+...++.+-|.|-+.+|+
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 9999998 5678999999999998877653 4679999998 4456778888899999999999999999
Q ss_pred EEECCCeEEEEECCCCcE-EEeeCCCCCCeEEEEEeCCCCEEEEEE-CCcEEEEEecCCeeecccccCCCeeeeEEecCC
Q 001472 201 TGSADRTVKFWDLETFEL-IGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDG 278 (1072)
Q Consensus 201 TgS~DGtIrIWDl~tge~-i~~~~~h~~~VtsIafSPDG~~LasGs-dg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDG 278 (1072)
+|..||.|.+||++++.. +.....|...|+.++|++|..++++++ |..-++||..+..+.+.+.........+.+|-.
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~ 243 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLL 243 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceeccccc
Confidence 999999999999999754 555677888999999999999999986 456899999999999998888788888888877
Q ss_pred CEEEEEEcCCeEEEEE--cCCCceee--------eecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcceEEeecCC
Q 001472 279 KLLGCSFYRNSVGIWV--ADVSHVEP--------YGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDY 348 (1072)
Q Consensus 279 k~LAsgs~DGsVrIWD--lds~~l~~--------~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD~ 348 (1072)
..+++|+.....-|=- ...++.+. -..+.-.+|-++|++++|+|||. .-+.|...|+.++...|.
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk-----sYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK-----SYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc-----ccccCCCCceEEEEEecc
Confidence 7777775433222221 11121111 11233378999999999999999 667788888877776663
Q ss_pred c
Q 001472 349 E 349 (1072)
Q Consensus 349 e 349 (1072)
+
T Consensus 319 ~ 319 (327)
T KOG0643|consen 319 N 319 (327)
T ss_pred c
Confidence 3
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-25 Score=240.24 Aligned_cols=282 Identities=16% Similarity=0.319 Sum_probs=240.0
Q ss_pred EEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001472 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87 (1072)
Q Consensus 8 I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl 87 (1072)
+..|.||.+.|.|++=+|..-..+++|+.||.|+|||+....++..+..|.+.|..+++.. ..+++++.|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 4568999999999999998767799999999999999999999999999999999999987 66788889999999998
Q ss_pred CCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEecCCeE
Q 001472 88 EESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR-WVVSGGFDNVV 166 (1072)
Q Consensus 88 ~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~-~LaTGS~DGsI 166 (1072)
+. .++.++. ....+..+.-+..+..|++||. .|.|||.....++..+......|.++.|+|... .|++|+.|+.|
T Consensus 137 ~~-~p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 137 DG-PPLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred cC-Ccceeee-ccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 65 4666655 3556777777777888888864 599999998889999988888899999999654 66777799999
Q ss_pred EEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCC-cEEEeeCCCCCCeEEEEEeCCCCEEEEEE
Q 001472 167 KVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF-ELIGSTRPEVTGVHAITFHPDGRTLFSGF 245 (1072)
Q Consensus 167 ~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tg-e~i~~~~~h~~~VtsIafSPDG~~LasGs 245 (1072)
.+||++++.+++.+.. .-.-..|+|+|.+..+.+|..|..++.||++.. .++..+..|...|.++.|+|.|+-+++|+
T Consensus 213 vLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred EEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence 9999999988876652 344578999998888999999999999999874 46777889999999999999999999975
Q ss_pred -CCcEEEEEecCCeeeccccc--CCCeeeeEEecCCCEEEEEEcCCeEEEEEcC
Q 001472 246 -DDNLKVYSWEPVICHDSVDM--GWSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 246 -dg~I~Vwd~~s~~~~~~l~~--~~s~i~~l~spDGk~LAsgs~DGsVrIWDld 296 (1072)
|..|+||..+.+.....+.. -..+++..|+.|.+|+++|+.|+.|++|...
T Consensus 292 yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 292 YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 67799999987766555432 2367788899999999999999999999764
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-24 Score=240.28 Aligned_cols=285 Identities=18% Similarity=0.297 Sum_probs=221.7
Q ss_pred EEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCc----eEEEe-eCCCCCeEEEEEcCCCCEEEEEEcCCeEE
Q 001472 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT----ALMSL-CGLSSPVDSVAFDSAEVLVLAGASTGVIK 83 (1072)
Q Consensus 9 ~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~----~l~sl-~~hs~~ItsLafSPdG~~LatGS~DGsI~ 83 (1072)
-.|.+|+..|.++++.|.| -.|++|+.|..|++||+.... ....+ ......|.++.|++.|..|++.+.....+
T Consensus 161 i~l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred EeccCCceEEEEeeecCCC-ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 4688999999999999999 679999999999999995432 22222 23456799999999999999999889999
Q ss_pred EEEcCCCeeEEE------------EeCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeE-EEEEe-----cCCCC
Q 001472 84 LWDLEESKMVRT------------LTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKKGC-IHTYK-----GHTRG 144 (1072)
Q Consensus 84 IWDl~tgk~i~t------------l~~h~~~VtsLafSPdg~-~LaSgs~DGsI~IWDlrtgk~-v~~l~-----~h~~~ 144 (1072)
|+|-...+.... .++|...++|.+|+|+.+ .|++++.||+++|||+...+. ...++ +..-+
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 999654443322 357888999999999765 789999999999999976542 33332 23346
Q ss_pred eEEEEEcCCCCEEEEEecCCeEEEEECCCCce---EEEeeecCC--ceEEEEEcCCCcEEEEEECCCeEEEEECCCCcE-
Q 001472 145 INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL---LHDFKFHEG--HIRSIDFHPLEFLLATGSADRTVKFWDLETFEL- 218 (1072)
Q Consensus 145 VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~---i~~~~~h~g--~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~- 218 (1072)
++.++|++||++||+|+.||.|.+|+...... ...-++|.. .|+||.|+++|++|++-+.|+++++||++..+.
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 89999999999999999999999999855432 333446766 899999999999999999999999999998653
Q ss_pred EEeeCC--CCCCeEEEEEeCCCCEEEEEE-------CCcEEEEEecCCeeecccccC-CCeeeeEEecCCCEEEEEEcCC
Q 001472 219 IGSTRP--EVTGVHAITFHPDGRTLFSGF-------DDNLKVYSWEPVICHDSVDMG-WSTLGDLCINDGKLLGCSFYRN 288 (1072)
Q Consensus 219 i~~~~~--h~~~VtsIafSPDG~~LasGs-------dg~I~Vwd~~s~~~~~~l~~~-~s~i~~l~spDGk~LAsgs~DG 288 (1072)
+....+ ...+-+.++|+|+.++|++|. .+.+.+||-.+...+..+... .+++.++|.|.=+.|++|+.||
T Consensus 400 L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG 479 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDG 479 (641)
T ss_pred hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCC
Confidence 333322 234567899999999999984 234788887766665555443 4556677778777788888999
Q ss_pred eEEEEE
Q 001472 289 SVGIWV 294 (1072)
Q Consensus 289 sVrIWD 294 (1072)
.++||-
T Consensus 480 ~~~vyY 485 (641)
T KOG0772|consen 480 TAHVYY 485 (641)
T ss_pred ceEEEE
Confidence 999984
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-25 Score=235.63 Aligned_cols=265 Identities=20% Similarity=0.377 Sum_probs=225.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEe--------CCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 001472 56 GLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT--------GHKSNCTAVEFHPFGEFFASGCMDTNLKIW 127 (1072)
Q Consensus 56 ~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~--------~h~~~VtsLafSPdg~~LaSgs~DGsI~IW 127 (1072)
+....+.|..|+|||+||++|+.||.|.+|+..+|+....++ -+...|.|++|+.|...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 445678899999999999999999999999999988654433 367889999999999999999999999999
Q ss_pred ECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCC
Q 001472 128 DIRKKGCIHTYK-GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADR 206 (1072)
Q Consensus 128 Dlrtgk~v~~l~-~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DG 206 (1072)
.+.+|.|++.|. +|..+|+|+.|+.|+..+++++.|.++++.-+.+|+++.+|.+|...|+...|.++|..+++++.||
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 999999999987 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCcEEEeeCCCC--CCeEEEEEeCCC-CEEE-EEECCcEEEEEecCCeeeccc----ccCCCeeeeEEecCC
Q 001472 207 TVKFWDLETFELIGSTRPEV--TGVHAITFHPDG-RTLF-SGFDDNLKVYSWEPVICHDSV----DMGWSTLGDLCINDG 278 (1072)
Q Consensus 207 tIrIWDl~tge~i~~~~~h~--~~VtsIafSPDG-~~La-sGsdg~I~Vwd~~s~~~~~~l----~~~~s~i~~l~spDG 278 (1072)
+|++|+..+.+++.++.... .+|.++..-|.. ..++ +...+.++|.++.... ...+ ..+...+.+..+|.|
T Consensus 371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv-VrsfsSGkREgGdFi~~~lSpkG 449 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV-VRSFSSGKREGGDFINAILSPKG 449 (508)
T ss_pred cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE-EeeeccCCccCCceEEEEecCCC
Confidence 99999999999998887543 457787777753 3444 4455667777765432 2222 234466777888999
Q ss_pred CEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCC
Q 001472 279 KLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 279 k~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs 325 (1072)
.++.|.+.|+.++.|.+-.+.++... .-|...+..++-+|-.+
T Consensus 450 ewiYcigED~vlYCF~~~sG~LE~tl----~VhEkdvIGl~HHPHqN 492 (508)
T KOG0275|consen 450 EWIYCIGEDGVLYCFSVLSGKLERTL----PVHEKDVIGLTHHPHQN 492 (508)
T ss_pred cEEEEEccCcEEEEEEeecCceeeee----ecccccccccccCcccc
Confidence 99999999999999999888887765 35667788888888666
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-25 Score=242.25 Aligned_cols=241 Identities=24% Similarity=0.501 Sum_probs=211.9
Q ss_pred ceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 001472 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1072)
Q Consensus 6 k~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IW 85 (1072)
..++.+.||+|.|.|+.|.. ++|++|+.|.+|++||+++++.+.++..|...|..+.|+ ..++++++.|.+|.+|
T Consensus 228 ~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVW 302 (499)
T KOG0281|consen 228 ECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVW 302 (499)
T ss_pred HHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEE
Confidence 34567899999999999975 589999999999999999999999999999999999997 5589999999999999
Q ss_pred EcCCCe---eEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEec
Q 001472 86 DLEESK---MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF 162 (1072)
Q Consensus 86 Dl~tgk---~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~ 162 (1072)
|+.... +.+.+.+|...|..+.|+ .+++++++.|.+|++|++.++.+++.+.+|..+|.|+.+. |+++++|+.
T Consensus 303 dm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSS 378 (499)
T KOG0281|consen 303 DMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS 378 (499)
T ss_pred eccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCC
Confidence 997654 334567899999999997 6799999999999999999999999999999999999884 889999999
Q ss_pred CCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCc---------EEEeeCCCCCCeEEEE
Q 001472 163 DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE---------LIGSTRPEVTGVHAIT 233 (1072)
Q Consensus 163 DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge---------~i~~~~~h~~~VtsIa 233 (1072)
|.+|++||+..|.++..+++|..-|.++.|. .+.+++|+.||+|++||+..+. ++..+..|.+.|..+.
T Consensus 379 DntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ 456 (499)
T KOG0281|consen 379 DNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ 456 (499)
T ss_pred CceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEe
Confidence 9999999999999999999999999999995 6789999999999999998754 2344556778899999
Q ss_pred EeCCCCEEEEEECCcEEEEEecCCe
Q 001472 234 FHPDGRTLFSGFDDNLKVYSWEPVI 258 (1072)
Q Consensus 234 fSPDG~~LasGsdg~I~Vwd~~s~~ 258 (1072)
|.. -+.++++.++.|.|||+..+.
T Consensus 457 FD~-fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 457 FDE-FQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred ecc-eEEEeccCCCeEEEEEcCCCC
Confidence 964 245555678899999997654
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=244.48 Aligned_cols=250 Identities=21% Similarity=0.392 Sum_probs=222.2
Q ss_pred cCceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeC-CCCCeEEEEEcCCCCEEEEEEcCCeE
Q 001472 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCG-LSSPVDSVAFDSAEVLVLAGASTGVI 82 (1072)
Q Consensus 4 tGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~-hs~~ItsLafSPdG~~LatGS~DGsI 82 (1072)
+|........+.+.|+++.|+++| .+|++|..+|.|.|||....+.+..+.+ |...|.+++|+ +..+.+|+.+|.|
T Consensus 206 s~~v~~l~~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I 282 (484)
T KOG0305|consen 206 SGSVTELCSFGEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKI 282 (484)
T ss_pred CCceEEeEecCCCceEEEEECCCC-CEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcE
Confidence 344444455558999999999999 8999999999999999999999999988 99999999998 7789999999999
Q ss_pred EEEEcCCCeeEEE-EeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEE
Q 001472 83 KLWDLEESKMVRT-LTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP-DGRWVVSG 160 (1072)
Q Consensus 83 ~IWDl~tgk~i~t-l~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSP-DG~~LaTG 160 (1072)
..+|++..+.... +.+|...|..+.|++|+.+||+|+.|+.+.|||.........+..|...|..++|+| ...+||+|
T Consensus 283 ~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsG 362 (484)
T KOG0305|consen 283 LNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATG 362 (484)
T ss_pred EEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEc
Confidence 9999988765544 888999999999999999999999999999999988888899999999999999999 56688886
Q ss_pred e--cCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEE--CCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeC
Q 001472 161 G--FDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS--ADRTVKFWDLETFELIGSTRPEVTGVHAITFHP 236 (1072)
Q Consensus 161 S--~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS--~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSP 236 (1072)
+ .|+.|++||..++..+..+. ..+.|.+|.|++..+.|+++. .++.|.||++.+.+.+..+.+|...|..++++|
T Consensus 363 GGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP 441 (484)
T KOG0305|consen 363 GGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSP 441 (484)
T ss_pred CCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECC
Confidence 5 68999999999999998887 467899999999987676654 467899999999999999999999999999999
Q ss_pred CCCEEEEE-ECCcEEEEEecCC
Q 001472 237 DGRTLFSG-FDDNLKVYSWEPV 257 (1072)
Q Consensus 237 DG~~LasG-sdg~I~Vwd~~s~ 257 (1072)
||..+++| .|.++++|.+-..
T Consensus 442 dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 442 DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCEEEEecccCcEEeccccCC
Confidence 99999986 6778999997653
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=236.33 Aligned_cols=303 Identities=17% Similarity=0.298 Sum_probs=243.1
Q ss_pred EEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEE----E-------------e-eCCCCCeEEEEEcCC
Q 001472 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALM----S-------------L-CGLSSPVDSVAFDSA 69 (1072)
Q Consensus 8 I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~----s-------------l-~~hs~~ItsLafSPd 69 (1072)
++.+..|.-+|.|++++|++ .+.++++.||+|.-|++.+++... . - ..|...+.+++.++|
T Consensus 135 ~~~~~~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 56778899999999999998 889999999999999997765331 0 0 267788999999999
Q ss_pred CCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEE
Q 001472 70 EVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIR 149 (1072)
Q Consensus 70 G~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLa 149 (1072)
|+||++|+.|..|.||+.++.+.+..+.+|.+.|.+++|-..-..+++++.|..|.+|++.....+.++.+|.+.|..|.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999999999998888899999999999999999988999999999999999
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCe
Q 001472 150 FTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGV 229 (1072)
Q Consensus 150 fSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~V 229 (1072)
...-++.+.+|+.|+++++|++. .+....|.++.+.+-|++|-. ...+++|+.+|.|.+|++.+.+++......++-+
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred hhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeecccccc
Confidence 99888888888899999999993 444556778888999999975 5578899999999999999988887765433322
Q ss_pred EEEEEeCCCCEEEEEECCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCc--eeeeecCC
Q 001472 230 HAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSH--VEPYGVGA 307 (1072)
Q Consensus 230 tsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~--l~~~~v~~ 307 (1072)
..+ + .+....-+...+..+...++++|+++|+|++|.+..+. +.++.
T Consensus 372 ~~~--------------~--------------~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~--- 420 (479)
T KOG0299|consen 372 PEL--------------D--------------PVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLY--- 420 (479)
T ss_pred CCc--------------c--------------ccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceee---
Confidence 111 0 01111223345566788899999999999999987663 22322
Q ss_pred CCCCCCCeeEEEECCCCCccceEEEEEeccCcceEEeecC
Q 001472 308 PEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPD 347 (1072)
Q Consensus 308 ~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD 347 (1072)
.....+.|++++|+++|+.+++. +|...-.-+|+...
T Consensus 421 ~ls~~GfVNsl~f~~sgk~ivag---iGkEhRlGRW~~~k 457 (479)
T KOG0299|consen 421 SLSLVGFVNSLAFSNSGKRIVAG---IGKEHRLGRWWCLK 457 (479)
T ss_pred ecccccEEEEEEEccCCCEEEEe---cccccccceeeEee
Confidence 14568999999999999965555 33333233666554
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=248.24 Aligned_cols=251 Identities=26% Similarity=0.492 Sum_probs=227.0
Q ss_pred cCceEEE-EecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 001472 4 RGYKLQE-FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVI 82 (1072)
Q Consensus 4 tGk~I~~-L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI 82 (1072)
.++.+.. +.||.+.|++++|.. ++.+|++|+.|.++++||+.++.+...+.+|...|.++... +.++++|+.|.+|
T Consensus 237 ~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tV 313 (537)
T KOG0274|consen 237 NGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTV 313 (537)
T ss_pred cceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceE
Confidence 4666676 999999999999987 44899999999999999999999999999999999988874 5578888999999
Q ss_pred EEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEec
Q 001472 83 KLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF 162 (1072)
Q Consensus 83 ~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~ 162 (1072)
++|++.++..+..+.+|.+.|.++..+ +.++++|+.||.|.+||+.+++++..+.+|...|.++.+... .++++|+.
T Consensus 314 kVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~ 390 (537)
T KOG0274|consen 314 KVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL 390 (537)
T ss_pred EEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee
Confidence 999999999999999999999999998 889999999999999999999999999999999999988765 78999999
Q ss_pred CCeEEEEECCCC-ceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCC-CCCCeEEEEEeCCCCE
Q 001472 163 DNVVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP-EVTGVHAITFHPDGRT 240 (1072)
Q Consensus 163 DGsI~IWDl~tg-k~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~-h~~~VtsIafSPDG~~ 240 (1072)
|+.|++||+.+. +++..+.+|..-+..+.+ .+++|++++.||+|++||...++++..+.. +.+.|..+++. +...
T Consensus 391 D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~i 467 (537)
T KOG0274|consen 391 DTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEI 467 (537)
T ss_pred ccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-cceE
Confidence 999999999999 999999999888866655 478999999999999999999999999988 67889888887 4566
Q ss_pred EEEEECCcEEEEEecCCeeeccc
Q 001472 241 LFSGFDDNLKVYSWEPVICHDSV 263 (1072)
Q Consensus 241 LasGsdg~I~Vwd~~s~~~~~~l 263 (1072)
|+++.++.+++||+.++.+...+
T Consensus 468 l~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 468 LCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EEEecCCeeEEEecccCchhhhh
Confidence 77788899999999998876654
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-22 Score=240.93 Aligned_cols=225 Identities=16% Similarity=0.312 Sum_probs=184.0
Q ss_pred EECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCC-CCEEEEEEcCCeEEEEEcCCCe--------eEEEEeCCCCCeE
Q 001472 34 GGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSA-EVLVLAGASTGVIKLWDLEESK--------MVRTLTGHKSNCT 104 (1072)
Q Consensus 34 Gs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPd-G~~LatGS~DGsI~IWDl~tgk--------~i~tl~~h~~~Vt 104 (1072)
|+.+|.|.+|+......+..+.+|...|.+++|+|+ +.+|++|+.||.|+|||+.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566889999999887888889999999999999996 7899999999999999997542 3456788999999
Q ss_pred EEEEcCCCCE-EEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeec
Q 001472 105 AVEFHPFGEF-FASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH 183 (1072)
Q Consensus 105 sLafSPdg~~-LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h 183 (1072)
+++|+|++.. |++++.||.|+|||++++..+..+. +...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999999875 5688999999999999998877776 5678999999999999999999999999999999999999999
Q ss_pred CCceEEE-----EEcCCCcEEEEEECCC----eEEEEECCC-CcEEEeeC--CCCCCeEEEEEeCCCCEEEEE-ECCcEE
Q 001472 184 EGHIRSI-----DFHPLEFLLATGSADR----TVKFWDLET-FELIGSTR--PEVTGVHAITFHPDGRTLFSG-FDDNLK 250 (1072)
Q Consensus 184 ~g~ItsL-----afSPdg~lLaTgS~DG----tIrIWDl~t-ge~i~~~~--~h~~~VtsIafSPDG~~LasG-sdg~I~ 250 (1072)
.+.+.+. .|++++.+|++++.|+ .|+|||+++ .+++..+. .+.+.+......++|.++++| +|+.|+
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 8765432 3458888999888764 799999995 45554432 222333344445568888887 567799
Q ss_pred EEEecCCee
Q 001472 251 VYSWEPVIC 259 (1072)
Q Consensus 251 Vwd~~s~~~ 259 (1072)
+|++.....
T Consensus 289 ~~e~~~~~~ 297 (568)
T PTZ00420 289 YYQHSLGSI 297 (568)
T ss_pred EEEccCCcE
Confidence 999976543
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-23 Score=219.25 Aligned_cols=267 Identities=19% Similarity=0.380 Sum_probs=230.4
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEE--EeCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 001472 52 MSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRT--LTGHKSNCTAVEFHP-FGEFFASGCMDTNLKIWD 128 (1072)
Q Consensus 52 ~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~t--l~~h~~~VtsLafSP-dg~~LaSgs~DGsI~IWD 128 (1072)
..+.+|...+.+++|+.+|..|++|+.|+++.+|+++..+.... ..+|.+.|-.++|+| ....|++++.|..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 34567889999999999999999999999999999987755443 457888899999988 456899999999999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeE
Q 001472 129 IRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTV 208 (1072)
Q Consensus 129 lrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtI 208 (1072)
++.++++.......+. .-+.|+|+|.++++++.|..|.+.|.++.+.....+ ....+.-++|+.++.+++.....|+|
T Consensus 94 ~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence 9999999988755444 568999999999999999999999999988877766 44567888999878877777778999
Q ss_pred EEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECC-cEEEEEecCCeeeccc-ccCCCeeeeEEecCCCEEEEEEc
Q 001472 209 KFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD-NLKVYSWEPVICHDSV-DMGWSTLGDLCINDGKLLGCSFY 286 (1072)
Q Consensus 209 rIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg-~I~Vwd~~s~~~~~~l-~~~~s~i~~l~spDGk~LAsgs~ 286 (1072)
.|......+++..+..|.....+|.|+|+|+|+++|+.+ .+.+||++...|...+ .+.|.+....|++||++||+++.
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSE 251 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASE 251 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCc
Confidence 999999999999999999999999999999999998655 5899999999988876 46788888889999999999999
Q ss_pred CCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCC
Q 001472 287 RNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 287 DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs 325 (1072)
|..|-|=++.++...+- .+..++...|+|+|...
T Consensus 252 Dh~IDIA~vetGd~~~e-----I~~~~~t~tVAWHPk~~ 285 (313)
T KOG1407|consen 252 DHFIDIAEVETGDRVWE-----IPCEGPTFTVAWHPKRP 285 (313)
T ss_pred cceEEeEecccCCeEEE-----eeccCCceeEEecCCCc
Confidence 99999998887765544 36678899999999544
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-22 Score=215.75 Aligned_cols=286 Identities=17% Similarity=0.269 Sum_probs=236.3
Q ss_pred ceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEc--CCeEE
Q 001472 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS--TGVIK 83 (1072)
Q Consensus 6 k~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~--DGsI~ 83 (1072)
+..+.|..-.+.|+++.|+.+| .+|++++.|..++|||..+++....+..++..+..+.|......++.++. |.+|+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDG-LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred ccccccccCCCceeEEEecCCC-CEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 3445566677899999999999 78888999999999999999999999999999999999988888888777 78999
Q ss_pred EEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecC
Q 001472 84 LWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163 (1072)
Q Consensus 84 IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~D 163 (1072)
..++.+.+.++.+.+|...|..++.+|-++.|++++.|++|++||++..++...+..... ..++|.|.|-++|++...
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCC
Confidence 999999999999999999999999999999999999999999999998888877764443 457999999999999888
Q ss_pred CeEEEEECCCC--ceEEEeee---cCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCC---eEEEEEe
Q 001472 164 NVVKVWDLTAG--KLLHDFKF---HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG---VHAITFH 235 (1072)
Q Consensus 164 GsI~IWDl~tg--k~i~~~~~---h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~---VtsIafS 235 (1072)
..|++||++.. .+...+.. .......|.|+|||++|+.+...+.+++.|.-.|..+..+..+... -.+.+|+
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence 89999999875 33444443 3566889999999999999999999999999999988887665443 2688999
Q ss_pred CCCCEEEEEEC-CcEEEEEecCCeeecccccC--CCeeeeEEecCCCEEEEEEcCCeEEEEEcC
Q 001472 236 PDGRTLFSGFD-DNLKVYSWEPVICHDSVDMG--WSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 236 PDG~~LasGsd-g~I~Vwd~~s~~~~~~l~~~--~s~i~~l~spDGk~LAsgs~DGsVrIWDld 296 (1072)
|||+++++|++ +.|.+|+++++.....+... ......-|.| ++...++.+..+.+|-.+
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP--~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP--RYAMFVSASSNLVFWLPD 303 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC--ceeeeeecCceEEEEecc
Confidence 99999999876 67999999988776666542 2222333334 344444457789999654
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-22 Score=217.03 Aligned_cols=271 Identities=15% Similarity=0.298 Sum_probs=223.7
Q ss_pred eEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeC--CCeEEEE
Q 001472 50 ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM--DTNLKIW 127 (1072)
Q Consensus 50 ~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~--DGsI~IW 127 (1072)
....+......|.++.|+.+|.+|++++.|..|.|||..+++.++++..+...+..++|......++.++. |..|+..
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 34455556788999999999999999999999999999999999999988889999999877777777666 7899999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCe
Q 001472 128 DIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207 (1072)
Q Consensus 128 Dlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGt 207 (1072)
++.+.+.++.+.+|...|..|+.+|-+..+++++.|++|++||++..++...+..... ..++|.|.|-++|++...+.
T Consensus 86 sl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSEL 163 (311)
T ss_pred EeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCe
Confidence 9999999999999999999999999989999999999999999998887776664333 34889999999999988889
Q ss_pred EEEEECCCCc--EEEeeC---CCCCCeEEEEEeCCCCEEEEEECCc-EEEEEecCCeeecccccC----CCeeeeEEecC
Q 001472 208 VKFWDLETFE--LIGSTR---PEVTGVHAITFHPDGRTLFSGFDDN-LKVYSWEPVICHDSVDMG----WSTLGDLCIND 277 (1072)
Q Consensus 208 IrIWDl~tge--~i~~~~---~h~~~VtsIafSPDG~~LasGsdg~-I~Vwd~~s~~~~~~l~~~----~s~i~~l~spD 277 (1072)
|++||++... +...+. ........+.|+|||++|+.+.+++ +++.|.-.+.....+... ..+....+.||
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd 243 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD 243 (311)
T ss_pred EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence 9999999752 233332 3356789999999999999876654 777777666655554332 23457777899
Q ss_pred CCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCC
Q 001472 278 GKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 278 Gk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs 325 (1072)
++++++|+.||+|.+|+++++....... .++.+.+.++.|+|--.
T Consensus 244 s~Fvl~gs~dg~i~vw~~~tg~~v~~~~---~~~~~~~~~~~fnP~~~ 288 (311)
T KOG1446|consen 244 SKFVLSGSDDGTIHVWNLETGKKVAVLR---GPNGGPVSCVRFNPRYA 288 (311)
T ss_pred CcEEEEecCCCcEEEEEcCCCcEeeEec---CCCCCCccccccCCcee
Confidence 9999999999999999998776655442 23678899999999544
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-24 Score=237.84 Aligned_cols=280 Identities=25% Similarity=0.379 Sum_probs=244.1
Q ss_pred EEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCc--eEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 001472 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT--ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWD 86 (1072)
Q Consensus 9 ~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~--~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWD 86 (1072)
..+..|.+.|+.+.|-++. ..|++|+.|..|++|+....+ .+.++.+..++|+.+.|.++++++++++.|+.+++|+
T Consensus 169 ~~ld~h~gev~~v~~l~~s-dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNS-DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhccccccceeEEccCc-chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 3467899999999999986 579999999999999986555 6777888889999999999999999999999999999
Q ss_pred cCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeE
Q 001472 87 LEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVV 166 (1072)
Q Consensus 87 l~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI 166 (1072)
+...+...++.+|.+.|+++.|......+++|+.|.+|++||+....|..++. ....+..|+.+ ...+++|..|+.|
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKV 324 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccce
Confidence 99999999999999999999998877679999999999999999988887765 34456667766 4568899999999
Q ss_pred EEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCC----CCeEEEEEeCCCCEEE
Q 001472 167 KVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEV----TGVHAITFHPDGRTLF 242 (1072)
Q Consensus 167 ~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~----~~VtsIafSPDG~~La 242 (1072)
++||.++..+......+. .|+++..+++|..|.+++.|.++.++|+++.+....+.... ...+.+.|||++.|++
T Consensus 325 RfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 325 RFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA 403 (459)
T ss_pred EEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee
Confidence 999999999999988654 89999999999999999999999999999988877765432 3478999999999999
Q ss_pred EEE-CCcEEEEEecCCeeecccccCC---CeeeeEEecCCCEEEEEEcCCeEEEE
Q 001472 243 SGF-DDNLKVYSWEPVICHDSVDMGW---STLGDLCINDGKLLGCSFYRNSVGIW 293 (1072)
Q Consensus 243 sGs-dg~I~Vwd~~s~~~~~~l~~~~---s~i~~l~spDGk~LAsgs~DGsVrIW 293 (1072)
+|+ ++.++||+..++++...+.... .+....|.+-|.+|++++.++.+.+|
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 975 6679999999999877765433 35666777899999999999999999
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-23 Score=218.60 Aligned_cols=276 Identities=20% Similarity=0.330 Sum_probs=225.4
Q ss_pred EEEEEecCCCcEEEEEE-------CCCeEEEEECCCCceEEEee--CCCCCeEEEEEcCC-CCEEEEEEcCCeEEEEEcC
Q 001472 19 NCISIGKKACRFLITGG-------DDQKVNLWAIGKPTALMSLC--GLSSPVDSVAFDSA-EVLVLAGASTGVIKLWDLE 88 (1072)
Q Consensus 19 t~IafSPdg~~lLaTGs-------~DGtV~IWDl~t~~~l~sl~--~hs~~ItsLafSPd-G~~LatGS~DGsI~IWDl~ 88 (1072)
.++.|||--.+.|+++. ..|.+.|.++..++-+.... .-...+..++|+++ .+.+++++.||.+++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 57889987656666553 36889999996555554443 34678999999984 5688889999999999964
Q ss_pred C-CeeEEEEeCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEecCCe
Q 001472 89 E-SKMVRTLTGHKSNCTAVEFHP-FGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP-DGRWVVSGGFDNV 165 (1072)
Q Consensus 89 t-gk~i~tl~~h~~~VtsLafSP-dg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSP-DG~~LaTGS~DGs 165 (1072)
. ..++..++.|...|.++.|++ .+..+++++.||+|++|+...++.+.++.+|...|....|+| ..+++++++.||.
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 3 457888999999999999998 455788889999999999999999999999999999999999 6779999999999
Q ss_pred EEEEECCCCceEEEeeecCCceEEEEEcC-CCcEEEEEECCCeEEEEECCCC-cEEEeeCCCCCCeEEEEEeCCCC-EEE
Q 001472 166 VKVWDLTAGKLLHDFKFHEGHIRSIDFHP-LEFLLATGSADRTVKFWDLETF-ELIGSTRPEVTGVHAITFHPDGR-TLF 242 (1072)
Q Consensus 166 I~IWDl~tgk~i~~~~~h~g~ItsLafSP-dg~lLaTgS~DGtIrIWDl~tg-e~i~~~~~h~~~VtsIafSPDG~-~La 242 (1072)
+++||++.......+..|...|.++.|+. +.+.|++|+.|+.|++||+++. .++..+.+|.-.|+.+.|||... .|+
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLa 251 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLA 251 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhh
Confidence 99999987655556899999999999998 5688999999999999999975 46788889999999999999754 445
Q ss_pred EE-ECCcEEEEEecC-CeeecccccCCCeeeeEEe--cCCCEEEEEEcCCeEEEEE
Q 001472 243 SG-FDDNLKVYSWEP-VICHDSVDMGWSTLGDLCI--NDGKLLGCSFYRNSVGIWV 294 (1072)
Q Consensus 243 sG-sdg~I~Vwd~~s-~~~~~~l~~~~s~i~~l~s--pDGk~LAsgs~DGsVrIWD 294 (1072)
++ .|=+++||+... ..+...++.+......+-+ .++.++|.+++|+.+.||+
T Consensus 252 SasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 252 SASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 55 455799999884 4455555555554444433 3788999999999999996
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-23 Score=222.18 Aligned_cols=288 Identities=16% Similarity=0.293 Sum_probs=234.6
Q ss_pred eEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCC------------------CceEEEeeCCCCCeEEEEEcC
Q 001472 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGK------------------PTALMSLCGLSSPVDSVAFDS 68 (1072)
Q Consensus 7 ~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t------------------~~~l~sl~~hs~~ItsLafSP 68 (1072)
.-.-+..|.+++.|-+|++|| .++++|+.|..|+|.|++. .-.+.++..|..+|.++.|+|
T Consensus 104 Et~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred ceEEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 345578899999999999999 8999999999999999851 124667888999999999999
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCeeEEEE--eCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE---ecCCC
Q 001472 69 AEVLVLAGASTGVIKLWDLEESKMVRTL--TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY---KGHTR 143 (1072)
Q Consensus 69 dG~~LatGS~DGsI~IWDl~tgk~i~tl--~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l---~~h~~ 143 (1072)
....|++|+.|++|++||+......+-+ -....+|.++.|+|.|.+|++|..-..+++||+.+.++...- ..|.+
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 9999999999999999999754322211 124678999999999999999999999999999998876543 35788
Q ss_pred CeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEee-ecC-CceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEe
Q 001472 144 GINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK-FHE-GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS 221 (1072)
Q Consensus 144 ~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~-~h~-g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~ 221 (1072)
.|+++.+++.|++.++|+.||.|++||--+++++..+. .|. ..|.+..|..+|+++++.+.|..+++|.+.++.++..
T Consensus 263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence 99999999999999999999999999999999888775 454 4588999999999999999999999999999999988
Q ss_pred eCCCCC-----CeEEEEEeCCCCEEEEEEC--CcEEEEEecCCeeecccc--cCCCeeeeEEecCCCEEEEEEcCCeEEE
Q 001472 222 TRPEVT-----GVHAITFHPDGRTLFSGFD--DNLKVYSWEPVICHDSVD--MGWSTLGDLCINDGKLLGCSFYRNSVGI 292 (1072)
Q Consensus 222 ~~~h~~-----~VtsIafSPDG~~LasGsd--g~I~Vwd~~s~~~~~~l~--~~~s~i~~l~spDGk~LAsgs~DGsVrI 292 (1072)
+.+... --+...|.....|++.-.+ +.+.-||-++......+. +...+.+..-+|.+..|.+++.|-.+++
T Consensus 343 YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRF 422 (430)
T KOG0640|consen 343 YTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARF 422 (430)
T ss_pred EecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeee
Confidence 765421 2345678888888887544 346677766654444333 3334455566688999999999999999
Q ss_pred EEc
Q 001472 293 WVA 295 (1072)
Q Consensus 293 WDl 295 (1072)
|.-
T Consensus 423 Wyr 425 (430)
T KOG0640|consen 423 WYR 425 (430)
T ss_pred eee
Confidence 953
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=221.58 Aligned_cols=240 Identities=25% Similarity=0.435 Sum_probs=209.2
Q ss_pred CCCCeEEEEEecCCCcEEEEEECCCeEEEEECCC-CceEEEeeCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEcCCCe
Q 001472 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGK-PTALMSLCGLSSPVDSVAFDS-AEVLVLAGASTGVIKLWDLEESK 91 (1072)
Q Consensus 14 Hsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t-~~~l~sl~~hs~~ItsLafSP-dG~~LatGS~DGsI~IWDl~tgk 91 (1072)
-.+.+..++|++...+.+++++.||+++|||... ..++..++.|...|.++.|++ ++..+++++-||+|++|+..-++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 3578999999999989999999999999999743 457888999999999999998 56678888999999999999999
Q ss_pred eEEEEeCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEecCCeEEEE
Q 001472 92 MVRTLTGHKSNCTAVEFHP-FGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP-DGRWVVSGGFDNVVKVW 169 (1072)
Q Consensus 92 ~i~tl~~h~~~VtsLafSP-dg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSP-DG~~LaTGS~DGsI~IW 169 (1072)
.+.++.+|...|+...|+| ..+.|++++.||.+++||++.......+..|...|.|+.|+. +...|++|+.|+.|++|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 9999999999999999999 567999999999999999987655555888999999999998 66788999999999999
Q ss_pred ECCCC-ceEEEeeecCCceEEEEEcCC-CcEEEEEECCCeEEEEECCCCc-EEEeeCCCCCCeEEEEEeC-CCCEEEE-E
Q 001472 170 DLTAG-KLLHDFKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFE-LIGSTRPEVTGVHAITFHP-DGRTLFS-G 244 (1072)
Q Consensus 170 Dl~tg-k~i~~~~~h~g~ItsLafSPd-g~lLaTgS~DGtIrIWDl~tge-~i~~~~~h~~~VtsIafSP-DG~~Las-G 244 (1072)
|++.. .++.++.+|.-.|..++|+|. ..+|++++.|-+++|||..... .+.+...|..-+..+.|++ ++.+++. |
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc
Confidence 99875 467888999999999999996 5789999999999999998544 4556667777899999987 4556665 6
Q ss_pred ECCcEEEEE
Q 001472 245 FDDNLKVYS 253 (1072)
Q Consensus 245 sdg~I~Vwd 253 (1072)
.|+.++||+
T Consensus 299 WDe~l~Vw~ 307 (311)
T KOG0277|consen 299 WDELLYVWN 307 (311)
T ss_pred cccceeeec
Confidence 788899986
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-23 Score=234.15 Aligned_cols=240 Identities=25% Similarity=0.473 Sum_probs=208.8
Q ss_pred EEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEEc
Q 001472 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE-VLVLAGASTGVIKLWDL 87 (1072)
Q Consensus 9 ~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG-~~LatGS~DGsI~IWDl 87 (1072)
+.|.-....|.++.|..|| .+|++|+..|.|+|||..+...+..+..|..++..+.|+|++ ..|++|+.|+.+++||+
T Consensus 62 k~~srFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL 140 (487)
T ss_pred hhHHhhccceeEEEeecCC-eEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence 4455667889999999999 899999999999999977767788899999999999999955 56777888899999999
Q ss_pred CCCeeEEEEeCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEecCCe
Q 001472 88 EESKMVRTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKK-GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNV 165 (1072)
Q Consensus 88 ~tgk~i~tl~~h~~~VtsLafSPdg~-~LaSgs~DGsI~IWDlrtg-k~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGs 165 (1072)
.+......+.+|.+.|.|.+|+|... .+++|+.||.|++||++.. ..+.++. |..+|..+.|.|.|..+++++ ...
T Consensus 141 s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~ 218 (487)
T KOG0310|consen 141 STAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNS 218 (487)
T ss_pred CCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCe
Confidence 99988778999999999999999654 8899999999999999987 5566665 899999999999999999887 568
Q ss_pred EEEEECCCC-ceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEE
Q 001472 166 VKVWDLTAG-KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG 244 (1072)
Q Consensus 166 I~IWDl~tg-k~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasG 244 (1072)
+++||+.+| +.+..+..|...|+|+++..++..|++|+-||.+++||+.+.+.+..+. ..++|.+++.+|+++.++.|
T Consensus 219 vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 219 VKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred EEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEe
Confidence 999999865 4555555599999999999999999999999999999999988887765 35889999999999999999
Q ss_pred ECCcEEEE
Q 001472 245 FDDNLKVY 252 (1072)
Q Consensus 245 sdg~I~Vw 252 (1072)
..+++..+
T Consensus 298 msnGlv~~ 305 (487)
T KOG0310|consen 298 MSNGLVSI 305 (487)
T ss_pred cccceeee
Confidence 76664333
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-23 Score=233.72 Aligned_cols=280 Identities=23% Similarity=0.370 Sum_probs=235.7
Q ss_pred ecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCC---ceEEEee--CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 001472 12 VAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP---TALMSLC--GLSSPVDSVAFDSAEVLVLAGASTGVIKLWD 86 (1072)
Q Consensus 12 ~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~---~~l~sl~--~hs~~ItsLafSPdG~~LatGS~DGsI~IWD 86 (1072)
..|..-|.++.++... +.++||+. |.|+|||+... ..+..+. .....|.++.+.|||+.|++|+.-.++.|||
T Consensus 416 L~HGEvVcAvtIS~~t-rhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPT-RHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hccCcEEEEEEecCCc-ceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 4787888888898887 78899886 78999999543 2333333 2457899999999999999999999999999
Q ss_pred cCCCee--EEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCC
Q 001472 87 LEESKM--VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN 164 (1072)
Q Consensus 87 l~tgk~--i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DG 164 (1072)
+..... ...+....-.+++++.+||.+..++++.||.|.|||+.+...++.|++|.+.+.||.+++||..|.+|+.|.
T Consensus 494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 976443 334444455688899999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEE-
Q 001472 165 VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS- 243 (1072)
Q Consensus 165 sI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~Las- 243 (1072)
+|+.||++++..+.+.. ....|.++.++|++.+|++|-.++.+.+..... .....+..|...|.++.|.+.|+|+++
T Consensus 574 tvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred ceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeec
Confidence 99999999998877665 467899999999999999999999998888664 344566778899999999999999998
Q ss_pred EECCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCCeEEEEEc
Q 001472 244 GFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1072)
Q Consensus 244 Gsdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDl 295 (1072)
|-|+-+..|...-+..+........++++-.+.|.+||++|+.|....||.+
T Consensus 652 GkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 652 GKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred CchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 5566688887766666655666667778888899999999999998888865
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=220.81 Aligned_cols=250 Identities=24% Similarity=0.452 Sum_probs=214.0
Q ss_pred ccCceEEEEecCCCCeEEEEEecCC--CcEEEEEECCCeEEEEECCCCceE----EEeeCCCCCeEEEEEcCCCCEEEEE
Q 001472 3 KRGYKLQEFVAHSANVNCISIGKKA--CRFLITGGDDQKVNLWAIGKPTAL----MSLCGLSSPVDSVAFDSAEVLVLAG 76 (1072)
Q Consensus 3 ktGk~I~~L~gHsg~Vt~IafSPdg--~~lLaTGs~DGtV~IWDl~t~~~l----~sl~~hs~~ItsLafSPdG~~LatG 76 (1072)
..|+.++.+.||.++|.+++|...+ ...|++++.|.++++|.++.+... ..-.+|...|.++...++|..+++|
T Consensus 132 ~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~Sg 211 (423)
T KOG0313|consen 132 LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSG 211 (423)
T ss_pred cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEee
Confidence 5789999999999999988876543 136999999999999998766432 2335999999999999999999999
Q ss_pred EcCCeEEEEEcCC-------------------------CeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001472 77 ASTGVIKLWDLEE-------------------------SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK 131 (1072)
Q Consensus 77 S~DGsI~IWDl~t-------------------------gk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrt 131 (1072)
+.|..|.||+... +.++..+.+|.++|.++.|++ ...+++++.|.+|+.||+.+
T Consensus 212 S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet 290 (423)
T KOG0313|consen 212 SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET 290 (423)
T ss_pred cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec
Confidence 9999999999321 124567889999999999997 66799999999999999999
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCc---eEEEeeecCCceEEEEEcCC-CcEEEEEECCCe
Q 001472 132 KGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK---LLHDFKFHEGHIRSIDFHPL-EFLLATGSADRT 207 (1072)
Q Consensus 132 gk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk---~i~~~~~h~g~ItsLafSPd-g~lLaTgS~DGt 207 (1072)
+..+..+.+ ...+.|+.++|..++|++|+.|..|++||.+++. ..++|.+|...|.++.|+|. ...|++|+.|++
T Consensus 291 g~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t 369 (423)
T KOG0313|consen 291 GGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT 369 (423)
T ss_pred ccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe
Confidence 999888874 4569999999999999999999999999998864 45678899999999999995 567899999999
Q ss_pred EEEEECCCCc-EEEeeCCCCCCeEEEEEeCCCCEEEE-EECCcEEEEEec
Q 001472 208 VKFWDLETFE-LIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWE 255 (1072)
Q Consensus 208 IrIWDl~tge-~i~~~~~h~~~VtsIafSPDG~~Las-Gsdg~I~Vwd~~ 255 (1072)
+++||+++-+ ++..+..|...|.++.|... .++++ |.|..|+|+.-.
T Consensus 370 ~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 370 VKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEEeccCCCcceeeccCCceEEEEeccCC-ceEEeccCcceEEEeccc
Confidence 9999999877 89999999999999999854 55666 567778887644
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-23 Score=230.79 Aligned_cols=273 Identities=25% Similarity=0.365 Sum_probs=232.2
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe--eEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001472 51 LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK--MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD 128 (1072)
Q Consensus 51 l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk--~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWD 128 (1072)
...+..|.+.+..+.|-++...|++|+.|..|++|++..++ .+.++.+..+.|+.+.|.++++++++++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 44567789999999999998999999999999999997766 6777888889999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeE
Q 001472 129 IRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTV 208 (1072)
Q Consensus 129 lrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtI 208 (1072)
+......+++.+|.+.|+++.|......+++|+.|.+|++||+....+..++. ....+..|+.+ +..+++|..|++|
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKV 324 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccce
Confidence 99999999999999999999999877779999999999999999988777665 34456667665 5678899999999
Q ss_pred EEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEE-ECCcEEEEEecCCeeecccc-----cCCCeeeeEEecCCCEEE
Q 001472 209 KFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSVD-----MGWSTLGDLCINDGKLLG 282 (1072)
Q Consensus 209 rIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasG-sdg~I~Vwd~~s~~~~~~l~-----~~~s~i~~l~spDGk~LA 282 (1072)
++||+++..+......+ +.|+++..+++|..|.++ -|+.+.++|+.+......+. .+......+|+|++.|++
T Consensus 325 RfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 325 RFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA 403 (459)
T ss_pred EEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee
Confidence 99999999988887766 589999999999888775 57789999999877655442 233455678889999999
Q ss_pred EEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccce
Q 001472 283 CSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLE 329 (1072)
Q Consensus 283 sgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa 329 (1072)
+|+.||.|+||++.+++++...... .....|++++|+|.|+++++
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~l~~s--~s~~aI~s~~W~~sG~~Lls 448 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKVLSLS--TSNAAITSLSWNPSGSGLLS 448 (459)
T ss_pred eccCCCcEEEEEccCceEEEEeccC--CCCcceEEEEEcCCCchhhc
Confidence 9999999999999999888765422 22237999999999996443
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=216.09 Aligned_cols=289 Identities=17% Similarity=0.338 Sum_probs=240.4
Q ss_pred ceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 001472 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1072)
Q Consensus 6 k~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IW 85 (1072)
..+++|.||.+.|+.++..... .++.+++.|.+-+||.++++.++..+.+|.+.|.++.|++.+.++++++.|++-+||
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tq-pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQ-PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred eehhhhcccccceeeehhhcCC-cceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 3567899999999999987766 689999999999999999999999999999999999999999999999999999999
Q ss_pred Ec------CC------------------------------C----eeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 001472 86 DL------EE------------------------------S----KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLK 125 (1072)
Q Consensus 86 Dl------~t------------------------------g----k~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~ 125 (1072)
.. .. + .++..+.+|.+.|.++.|...|+.+++++.|.+..
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 62 10 0 13456789999999999999999999999999999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCC-ceEEEeeecCCceEEEEEcCCCcEEEEEEC
Q 001472 126 IWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPLEFLLATGSA 204 (1072)
Q Consensus 126 IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tg-k~i~~~~~h~g~ItsLafSPdg~lLaTgS~ 204 (1072)
+||++++..+..+.+|....+.++-+|..+++++.+.|.+.++||++.. ..+..|++|...|++..|.-+. .+++|+.
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSD 376 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSD 376 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCC
Confidence 9999999999999999999999999999999999999999999999843 4577899999999999998755 5778999
Q ss_pred CCeEEEEECCCCc-EEEeeCCCCCCeEEEEEeCCCCEEEEEECC-cEEEEEecCCeeeccc----ccCCCeee-eEEec-
Q 001472 205 DRTVKFWDLETFE-LIGSTRPEVTGVHAITFHPDGRTLFSGFDD-NLKVYSWEPVICHDSV----DMGWSTLG-DLCIN- 276 (1072)
Q Consensus 205 DGtIrIWDl~tge-~i~~~~~h~~~VtsIafSPDG~~LasGsdg-~I~Vwd~~s~~~~~~l----~~~~s~i~-~l~sp- 276 (1072)
|.+|++||+++.. ++.++.. ..++..++.+..+..++.-.|+ .+++||++.......- ..+...+. +.|..
T Consensus 377 DrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee 455 (481)
T KOG0300|consen 377 DRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE 455 (481)
T ss_pred CceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeecccc
Confidence 9999999999865 4555543 4779999999988899887666 5999999865543322 22222233 33331
Q ss_pred -CCCEEEEEEcCCeEEEEEcCC
Q 001472 277 -DGKLLGCSFYRNSVGIWVADV 297 (1072)
Q Consensus 277 -DGk~LAsgs~DGsVrIWDlds 297 (1072)
--.-|++++.|..+.-|.+..
T Consensus 456 hp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 456 HPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred CcccccccccccceeeeeEecc
Confidence 123466677899999998764
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-20 Score=204.20 Aligned_cols=265 Identities=14% Similarity=0.177 Sum_probs=203.5
Q ss_pred cCceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEE-EcCCeE
Q 001472 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAG-ASTGVI 82 (1072)
Q Consensus 4 tGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatG-S~DGsI 82 (1072)
+++.++.+.+|. .+.+++|+|++..++++++.++.|++||..+++....+..+.. +..++|+|+++.++++ +.++.|
T Consensus 20 t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l 97 (300)
T TIGR03866 20 TLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLV 97 (300)
T ss_pred CCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeE
Confidence 567778887664 4788999999954557778899999999998887776655433 5678999999987665 457999
Q ss_pred EEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 001472 83 KLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT-NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGG 161 (1072)
Q Consensus 83 ~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DG-sI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS 161 (1072)
.+||+.+++.+..+.. ...+.+++|+|+|++++++..++ .+.+||..++..+..+. ....+.+++|+++|++|++++
T Consensus 98 ~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~ 175 (300)
T TIGR03866 98 TVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSS 175 (300)
T ss_pred EEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEc
Confidence 9999998887777653 34468899999999999888765 47788998887766554 233467899999999886554
Q ss_pred -cCCeEEEEECCCCceEEEeeecC-------CceEEEEEcCCCcEEEEE-ECCCeEEEEECCCCcEEEeeCCCCCCeEEE
Q 001472 162 -FDNVVKVWDLTAGKLLHDFKFHE-------GHIRSIDFHPLEFLLATG-SADRTVKFWDLETFELIGSTRPEVTGVHAI 232 (1072)
Q Consensus 162 -~DGsI~IWDl~tgk~i~~~~~h~-------g~ItsLafSPdg~lLaTg-S~DGtIrIWDl~tge~i~~~~~h~~~VtsI 232 (1072)
.++.|.+||+.+++.+..+..+. .....++|+|++.+++++ +.++.|.+||+.+++.+..+. +...+.++
T Consensus 176 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~ 254 (300)
T TIGR03866 176 EIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQL 254 (300)
T ss_pred CCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceE
Confidence 68999999999998777665321 123568899999986554 456789999999888766543 33578999
Q ss_pred EEeCCCCEEEEEE--CCcEEEEEecCCeeecccccCCCeeeeE
Q 001472 233 TFHPDGRTLFSGF--DDNLKVYSWEPVICHDSVDMGWSTLGDL 273 (1072)
Q Consensus 233 afSPDG~~LasGs--dg~I~Vwd~~s~~~~~~l~~~~s~i~~l 273 (1072)
+|+|+|++|+++. ++.|.+||++...+...+..+..+....
T Consensus 255 ~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 297 (300)
T TIGR03866 255 AFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVV 297 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeE
Confidence 9999999998763 6789999999988877776665554443
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-22 Score=231.79 Aligned_cols=278 Identities=22% Similarity=0.384 Sum_probs=232.1
Q ss_pred ceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceE--EEeeCCCCCeEE-EEEcC-CCCEEEEEEcCCe
Q 001472 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTAL--MSLCGLSSPVDS-VAFDS-AEVLVLAGASTGV 81 (1072)
Q Consensus 6 k~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l--~sl~~hs~~Its-LafSP-dG~~LatGS~DGs 81 (1072)
+.-+.+.||...|..+++.+.. .+++++.||++++|+-...+.+ ..+.+|.+-|.+ ++|-+ ++-.|++|+.|+.
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred eeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 3456799999999999988765 7999999999999997544433 345667777776 77775 4446999999999
Q ss_pred EEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 001472 82 IKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGG 161 (1072)
Q Consensus 82 I~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS 161 (1072)
|.+|......++..+++|...|+++....++. +++|+.|.++++|-. +++...+.+|...|+++++.|++ .+++|+
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgs 158 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGS 158 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEecc
Confidence 99999999999999999999999999887777 999999999999975 56667799999999999999987 799999
Q ss_pred cCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEE
Q 001472 162 FDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTL 241 (1072)
Q Consensus 162 ~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~L 241 (1072)
.|..|++|.- ++.+..|.+|...|..+++-+++. +++++.||.|++|++ +++.+..+.+|...++++....++..+
T Consensus 159 aDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~I 234 (745)
T KOG0301|consen 159 ADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLI 234 (745)
T ss_pred CcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeE
Confidence 9999999974 888999999999999999998654 667899999999999 789999999999999999955555555
Q ss_pred EE-EECCcEEEEEecCCeeecccccCC-CeeeeEEecCCCEEEEEEcCCeEEEEEcC
Q 001472 242 FS-GFDDNLKVYSWEPVICHDSVDMGW-STLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 242 as-Gsdg~I~Vwd~~s~~~~~~l~~~~-s~i~~l~spDGk~LAsgs~DGsVrIWDld 296 (1072)
++ |-|+.++||+.+ .|...+..+. ..+.+.+..+|. +++|+.||.|+||..+
T Consensus 235 vs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 235 VSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 55 667789999887 6777776665 444445555666 5667789999999765
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-22 Score=213.51 Aligned_cols=243 Identities=18% Similarity=0.338 Sum_probs=210.6
Q ss_pred EEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCC--EEEEEEcCCeEEEE
Q 001472 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEV--LVLAGASTGVIKLW 85 (1072)
Q Consensus 8 I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~--~LatGS~DGsI~IW 85 (1072)
+..|..|.+.|+|++.+. .|+|+|+.|-+|+|||+.+...+..+..|.+.|+++.|.+.-. .|++|+.||.|.+|
T Consensus 36 lF~~~aH~~sitavAVs~---~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVSG---PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccccceeEEEecc---eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 567899999999999974 7999999999999999999999999999999999999998665 89999999999999
Q ss_pred EcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCe
Q 001472 86 DLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNV 165 (1072)
Q Consensus 86 Dl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGs 165 (1072)
+.....++..+++|.+.|+.++++|.|++-++.+.|+.++.||+-.|+.-....- ......+.|+|.|.+|+.++.+ .
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~ 190 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-K 190 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-E
Confidence 9999999999999999999999999999999999999999999998876555442 2334569999999999988865 5
Q ss_pred EEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEe--CCCCEEEE
Q 001472 166 VKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFH--PDGRTLFS 243 (1072)
Q Consensus 166 I~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafS--PDG~~Las 243 (1072)
|-+|.+.+......+.. ...+.++.|. ++..|++|+.|+.|.+||.....+...+.+|...|.++.+- |++.+|++
T Consensus 191 i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvT 268 (362)
T KOG0294|consen 191 IDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVT 268 (362)
T ss_pred EEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEE
Confidence 88999988776655542 3456777775 57789999999999999999999999999999999999853 56788887
Q ss_pred -EECCcEEEEEecCC
Q 001472 244 -GFDDNLKVYSWEPV 257 (1072)
Q Consensus 244 -Gsdg~I~Vwd~~s~ 257 (1072)
++||.|+|||++..
T Consensus 269 aSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 269 ASSDGFIKVWDIDME 283 (362)
T ss_pred eccCceEEEEEcccc
Confidence 57888999998865
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-22 Score=224.36 Aligned_cols=284 Identities=18% Similarity=0.266 Sum_probs=212.2
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCee----EEEE-eCCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 001472 52 MSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM----VRTL-TGHKSNCTAVEFHPFGEFFASGCMDTNLKI 126 (1072)
Q Consensus 52 ~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~----i~tl-~~h~~~VtsLafSPdg~~LaSgs~DGsI~I 126 (1072)
..+.+|...|.++++.|.|..|++|+.|..|++||+..... .+.+ ......|.++.|++.|..|++.+.....++
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 34677888999999999999999999999999999975421 1222 234557999999999999999888999999
Q ss_pred EECCCCeEEEE------------EecCCCCeEEEEEcCCC-CEEEEEecCCeEEEEECCCCce-EEEee-----ecCCce
Q 001472 127 WDIRKKGCIHT------------YKGHTRGINTIRFTPDG-RWVVSGGFDNVVKVWDLTAGKL-LHDFK-----FHEGHI 187 (1072)
Q Consensus 127 WDlrtgk~v~~------------l~~h~~~VtsLafSPDG-~~LaTGS~DGsI~IWDl~tgk~-i~~~~-----~h~g~I 187 (1072)
+|-.....+.. -++|...++|.+|+|+. ..|++++.||++++||+...+. ...|+ +..-.+
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 99543333222 24688889999999965 4789999999999999976543 33333 233468
Q ss_pred EEEEEcCCCcEEEEEECCCeEEEEECCCCcE---EEeeCCCCC--CeEEEEEeCCCCEEEE-EECCcEEEEEecCCe-ee
Q 001472 188 RSIDFHPLEFLLATGSADRTVKFWDLETFEL---IGSTRPEVT--GVHAITFHPDGRTLFS-GFDDNLKVYSWEPVI-CH 260 (1072)
Q Consensus 188 tsLafSPdg~lLaTgS~DGtIrIWDl~tge~---i~~~~~h~~--~VtsIafSPDG~~Las-Gsdg~I~Vwd~~s~~-~~ 260 (1072)
+.++|+++|++||+|+.||.|.+|+..+... ...-..|.. .|++|.|++||++|++ |.|+.+++||++... ++
T Consensus 321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL 400 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPL 400 (641)
T ss_pred eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccch
Confidence 9999999999999999999999999865321 222344544 7999999999999999 789999999998643 32
Q ss_pred c---ccccCCCeeeeEEecCCCEEEEEEc------CCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccceEE
Q 001472 261 D---SVDMGWSTLGDLCINDGKLLGCSFY------RNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKV 331 (1072)
Q Consensus 261 ~---~l~~~~s~i~~l~spDGk~LAsgs~------DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~V 331 (1072)
. .+...+....+.|+|+.++|++|.. .|.+.+||..+-... +.+. .....|..+.|+|-=+ -
T Consensus 401 ~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v-~ki~---i~~aSvv~~~WhpkLN-----Q 471 (641)
T KOG0772|consen 401 NVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV-YKID---ISTASVVRCLWHPKLN-----Q 471 (641)
T ss_pred hhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE-EEec---CCCceEEEEeecchhh-----h
Confidence 2 2344566677889999999999863 467888875432222 2222 2267788999999777 4
Q ss_pred EEEeccCcceEEe
Q 001472 332 GIIGRSTSGFRST 344 (1072)
Q Consensus 332 laiG~stG~~r~i 344 (1072)
++.|..+|..+++
T Consensus 472 i~~gsgdG~~~vy 484 (641)
T KOG0772|consen 472 IFAGSGDGTAHVY 484 (641)
T ss_pred eeeecCCCceEEE
Confidence 5566666644443
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=217.79 Aligned_cols=277 Identities=19% Similarity=0.274 Sum_probs=230.6
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE
Q 001472 59 SPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY 138 (1072)
Q Consensus 59 ~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l 138 (1072)
..+.++...+....+++|+.|..+.++|...++.+..+++|...|+.+.|+++...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 45777888887789999999999999999999999999999999999999999999999999999999999887777778
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeee--cCCceEEEEEcCCCcEEEEEECCCeEEEEECCCC
Q 001472 139 KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF--HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF 216 (1072)
Q Consensus 139 ~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~--h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tg 216 (1072)
..|..+|+.+..+|.|.||++++.||+..+.|+++|..+..... ..-.+++.+|||||.+|.+|..||.|+|||+.++
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 88999999999999999999999999999999999998877664 2345899999999999999999999999999999
Q ss_pred cEEEeeCCCCCCeEEEEEeCCCCEEEEEECCc-EEEEEecCCeeecccccCC--CeeeeEEecCCCEEEEEEcCCeEEEE
Q 001472 217 ELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN-LKVYSWEPVICHDSVDMGW--STLGDLCINDGKLLGCSFYRNSVGIW 293 (1072)
Q Consensus 217 e~i~~~~~h~~~VtsIafSPDG~~LasGsdg~-I~Vwd~~s~~~~~~l~~~~--s~i~~l~spDGk~LAsgs~DGsVrIW 293 (1072)
..+..|.+|.++|..|+|+.+|-||+++.+++ +++||++.......+.... ......+-..|.+|+.++.|=.|+++
T Consensus 380 ~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 380 TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence 99999999999999999999999999988776 9999999887776665433 35555555789999999666555555
Q ss_pred EcCCCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcceE
Q 001472 294 VADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFR 342 (1072)
Q Consensus 294 Dlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r 342 (1072)
+ .....|........+.+..+++.|..... +++.+...-.++
T Consensus 460 ~--k~~k~W~~~~~~~~~sg~st~v~Fg~~aq-----~l~s~smd~~l~ 501 (506)
T KOG0289|consen 460 K--KKTKSWTEIKELADHSGLSTGVRFGEHAQ-----YLASTSMDAILR 501 (506)
T ss_pred e--cccccceeeehhhhcccccceeeecccce-----EEeeccchhheE
Confidence 4 33333333333345566788888877655 555555544333
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-23 Score=235.72 Aligned_cols=284 Identities=20% Similarity=0.340 Sum_probs=230.2
Q ss_pred cCCCCeE---EEEEecCCCcEEEEEECCCeEEEEECCCCc------eEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEE
Q 001472 13 AHSANVN---CISIGKKACRFLITGGDDQKVNLWAIGKPT------ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIK 83 (1072)
Q Consensus 13 gHsg~Vt---~IafSPdg~~lLaTGs~DGtV~IWDl~t~~------~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~ 83 (1072)
.|...|. .+..+..+++||++||.||.|++|++.... .+..+..|...|..+....+|+.|++++.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3455566 556666666899999999999999984432 3566788999999999999999999999999999
Q ss_pred EEEcCCC--eeEEEEeCCCCCeEEEEE-cCCCCEEEEEeCCCeEEEEECCCCe--EEEE--------Ee-cCCCCeEEEE
Q 001472 84 LWDLEES--KMVRTLTGHKSNCTAVEF-HPFGEFFASGCMDTNLKIWDIRKKG--CIHT--------YK-GHTRGINTIR 149 (1072)
Q Consensus 84 IWDl~tg--k~i~tl~~h~~~VtsLaf-SPdg~~LaSgs~DGsI~IWDlrtgk--~v~~--------l~-~h~~~VtsLa 149 (1072)
+|+...+ -+..++..|.+.|.|+++ -++...+|+||.|+.|.+||+.++. .+.. +. ++...|++++
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 9999876 466778889999999999 7788899999999999999999773 2222 22 6778899999
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCe
Q 001472 150 FTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGV 229 (1072)
Q Consensus 150 fSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~V 229 (1072)
..+.|..|+.|+..+.|++||.++++.+..+.+|...|..+..++||..+++++.||+|++||+...+++.++..|...|
T Consensus 179 ~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~V 258 (735)
T KOG0308|consen 179 MNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGV 258 (735)
T ss_pred cCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCEEEEEE-CCcEEEEEecCC-eeecccccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcC
Q 001472 230 HAITFHPDGRTLFSGF-DDNLKVYSWEPV-ICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 230 tsIafSPDG~~LasGs-dg~I~Vwd~~s~-~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDld 296 (1072)
+++..+|+-.++++|+ ++.|..-++.+. .+.................+.+-+-+++.|+.|+-|...
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 9999999999999875 556776676653 222222222222222222122333566789999999543
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=210.72 Aligned_cols=264 Identities=16% Similarity=0.305 Sum_probs=213.1
Q ss_pred EEEEECCCeEEEEECCC------------CceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeC
Q 001472 31 LITGGDDQKVNLWAIGK------------PTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG 98 (1072)
Q Consensus 31 LaTGs~DGtV~IWDl~t------------~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~ 98 (1072)
|++|++...|.-+++.- ...++.+..|.++|++++.+ +.++++|+.|-+|+|||+.....+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec
Confidence 56666666665555421 12356678899999999985 89999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCce
Q 001472 99 HKSNCTAVEFHPFGE--FFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL 176 (1072)
Q Consensus 99 h~~~VtsLafSPdg~--~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~ 176 (1072)
|.+.|+++.|.++-. +|++|+.||.|.+|+.....++..+++|.+.|+.++.+|.|++.++.+.|+.++.|++-.|+.
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 999999999998765 899999999999999999999999999999999999999999999999999999999999887
Q ss_pred EEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecC
Q 001472 177 LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEP 256 (1072)
Q Consensus 177 i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s 256 (1072)
-....... ..+.+.|+|.|.+++.++.+ .|-+|.+.+......+... ..+.++.|...+.+++.+.++.|.+||-+.
T Consensus 162 a~v~~L~~-~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds 238 (362)
T KOG0294|consen 162 AFVLNLKN-KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFLDGSELLVGGDNEWISLKDTDS 238 (362)
T ss_pred ceeeccCC-cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeecCCceEEEecCCceEEEeccCC
Confidence 66655322 23459999999988888875 6999999876655444332 457788887655544445666799999998
Q ss_pred CeeecccccCCCeeeeEEe---cCCCEEEEEEcCCeEEEEEcCCCc
Q 001472 257 VICHDSVDMGWSTLGDLCI---NDGKLLGCSFYRNSVGIWVADVSH 299 (1072)
Q Consensus 257 ~~~~~~l~~~~s~i~~l~s---pDGk~LAsgs~DGsVrIWDlds~~ 299 (1072)
..+...+..+..-+..+++ +++.||++++.||.|+|||++...
T Consensus 239 ~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 239 DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 7777766655555544443 678899999999999999998663
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=194.44 Aligned_cols=284 Identities=17% Similarity=0.274 Sum_probs=229.2
Q ss_pred EecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCC-----------ce----EEEeeCCCCCeEEEEEcCCCCEEEE
Q 001472 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP-----------TA----LMSLCGLSSPVDSVAFDSAEVLVLA 75 (1072)
Q Consensus 11 L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~-----------~~----l~sl~~hs~~ItsLafSPdG~~Lat 75 (1072)
+...+..|.+++|+|.| .+.++|+...+++|...... +. ...-+.|.+.|+|.+|+|+|.+|++
T Consensus 28 ~l~dsqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat 106 (350)
T KOG0641|consen 28 ILEDSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT 106 (350)
T ss_pred EecchhheeeEEecCCC-ceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence 34456789999999999 78899999999998754211 11 1223568899999999999999999
Q ss_pred EEcCCeEEEEEcCCCee-----EEEEeCCCCCeEEEEEcCC----CCEEEEEe-CCCeEEEEECCCCeEEEEEecCCCCe
Q 001472 76 GASTGVIKLWDLEESKM-----VRTLTGHKSNCTAVEFHPF----GEFFASGC-MDTNLKIWDIRKKGCIHTYKGHTRGI 145 (1072)
Q Consensus 76 GS~DGsI~IWDl~tgk~-----i~tl~~h~~~VtsLafSPd----g~~LaSgs-~DGsI~IWDlrtgk~v~~l~~h~~~V 145 (1072)
|+.|.+|++.-+..... -..+.-|.+.|..++|..+ +..|++++ .|..|++-|...|+.++.+.+|.+.|
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi 186 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI 186 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE
Confidence 99999999987654322 2456679999999999653 44677664 36788888999999999999999988
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeee--c-----CCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcE
Q 001472 146 NTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF--H-----EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFEL 218 (1072)
Q Consensus 146 tsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~--h-----~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~ 218 (1072)
.++ ++-+|-++++|+.|.+|++||++-..++..+.. | ...|.+++..|.|++|++|..|....+||++.+..
T Consensus 187 lal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~ 265 (350)
T KOG0641|consen 187 LAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM 265 (350)
T ss_pred EEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence 765 334678999999999999999998877766542 2 25689999999999999999999999999999999
Q ss_pred EEeeCCCCCCeEEEEEeCCCCEEEEEE-CCcEEEEEecCCeeec-----ccccCCCeeeeEEecCCCEEEEEEcCCeEEE
Q 001472 219 IGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHD-----SVDMGWSTLGDLCINDGKLLGCSFYRNSVGI 292 (1072)
Q Consensus 219 i~~~~~h~~~VtsIafSPDG~~LasGs-dg~I~Vwd~~s~~~~~-----~l~~~~s~i~~l~spDGk~LAsgs~DGsVrI 292 (1072)
+..+.+|...|+++.|+|...||++++ |..|++-|++....+. .-......+.+.|.+..-.+++.+.|.++.+
T Consensus 266 iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tl 345 (350)
T KOG0641|consen 266 IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATL 345 (350)
T ss_pred eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEE
Confidence 999999999999999999999999975 5679999987543322 2234456677778888888899999999999
Q ss_pred EEcC
Q 001472 293 WVAD 296 (1072)
Q Consensus 293 WDld 296 (1072)
|-+.
T Consensus 346 wa~~ 349 (350)
T KOG0641|consen 346 WALN 349 (350)
T ss_pred eccC
Confidence 9653
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=219.50 Aligned_cols=279 Identities=16% Similarity=0.242 Sum_probs=233.8
Q ss_pred CCCeEEEEEecCCCcEEEEEECCCeEEEEECCC--CceEEEeeCCCCCeEEEEEcCCCC-EEEEEEcCCeEEEEEcCCCe
Q 001472 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGK--PTALMSLCGLSSPVDSVAFDSAEV-LVLAGASTGVIKLWDLEESK 91 (1072)
Q Consensus 15 sg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t--~~~l~sl~~hs~~ItsLafSPdG~-~LatGS~DGsI~IWDl~tgk 91 (1072)
.+.|+|+.|+|.. .+|++|+.||.++||.+.. ...++.+.-...+|.++.|.|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~-plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTA-PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCC-ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 4789999999987 8999999999999998843 446777777789999999999998 89999999999999999887
Q ss_pred eEEE--EeCCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEE
Q 001472 92 MVRT--LTGHK-SNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKV 168 (1072)
Q Consensus 92 ~i~t--l~~h~-~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~I 168 (1072)
.... +.++. ..+.....++++++|+..+..|.|++....+++.+..++ ..+.|..++|+.|++.|++++.+|.|.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 5432 33333 357778899999999999999999999999999999988 5567999999999999999999999999
Q ss_pred EECCCCceEEEeeecCCce--EEEEEcCCCcEEEEEECCCeEEEEECCC------CcEEEeeCCCCCCeEEEEEeCCCCE
Q 001472 169 WDLTAGKLLHDFKFHEGHI--RSIDFHPLEFLLATGSADRTVKFWDLET------FELIGSTRPEVTGVHAITFHPDGRT 240 (1072)
Q Consensus 169 WDl~tgk~i~~~~~h~g~I--tsLafSPdg~lLaTgS~DGtIrIWDl~t------ge~i~~~~~h~~~VtsIafSPDG~~ 240 (1072)
||++...+++.|.. .+.| +++|.++++.+||+|+..|.|.|||.++ .+++..+..-...|+++.|++|++.
T Consensus 371 ~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qi 449 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQI 449 (514)
T ss_pred EecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhh
Confidence 99999999998874 3333 5678889999999999999999999764 3456666666778999999999999
Q ss_pred EEEEE---CCcEEEEEecCCeeecccccC----CCeeeeEEecCCCEEEEEEcCCeEEEEEcC
Q 001472 241 LFSGF---DDNLKVYSWEPVICHDSVDMG----WSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 241 LasGs---dg~I~Vwd~~s~~~~~~l~~~----~s~i~~l~spDGk~LAsgs~DGsVrIWDld 296 (1072)
||.++ .+.+++-.+.+......++.. ..+.+..|+|.|.+||.|..+|.|.+|.+.
T Consensus 450 LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 450 LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99865 455888887776655554433 245677888999999999999999999763
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=210.76 Aligned_cols=285 Identities=19% Similarity=0.288 Sum_probs=226.9
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC------------C------eeEEEEeCCCCCeEEEEEcCCC
Q 001472 51 LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE------------S------KMVRTLTGHKSNCTAVEFHPFG 112 (1072)
Q Consensus 51 l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~t------------g------k~i~tl~~h~~~VtsLafSPdg 112 (1072)
...+..|+.++.+.+|++||.++++|+.|..|+|+|++. | -.++++..|.+.|.++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 344678999999999999999999999999999999861 1 2578888999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeEE---EEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEee---ecCCc
Q 001472 113 EFFASGCMDTNLKIWDIRKKGCI---HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK---FHEGH 186 (1072)
Q Consensus 113 ~~LaSgs~DGsI~IWDlrtgk~v---~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~---~h~g~ 186 (1072)
..|++|+.|++|++||+...... ..+. ...+|.++.|+|.|.+|++|..-..+++||+.+.++...-. .|.+.
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 99999999999999998754322 2222 45679999999999999999999999999999988765543 57889
Q ss_pred eEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCC--CCeEEEEEeCCCCEEEE-EECCcEEEEEecCCeeeccc
Q 001472 187 IRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEV--TGVHAITFHPDGRTLFS-GFDDNLKVYSWEPVICHDSV 263 (1072)
Q Consensus 187 ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~--~~VtsIafSPDG~~Las-Gsdg~I~Vwd~~s~~~~~~l 263 (1072)
|+++.+++.+++.++|+.||.|++||--+++++.++.... ..|.+..|..+|+|+++ |-|..+++|.+.++.++..+
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 9999999999999999999999999999999988775432 35999999999999998 45667999999999888776
Q ss_pred ccCC------CeeeeEEecCCCEEEEEE-cCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEec
Q 001472 264 DMGW------STLGDLCINDGKLLGCSF-YRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGR 336 (1072)
Q Consensus 264 ~~~~------s~i~~l~spDGk~LAsgs-~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~ 336 (1072)
.... ......|-+...|++.-. ..+.+.-||........+. ..+|.+.+.++.-||.+. ....+.
T Consensus 344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~---slgHn~a~R~i~HSP~~p-----~FmTcs 415 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL---SLGHNGAVRWIVHSPVEP-----AFMTCS 415 (430)
T ss_pred ecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc---ccCCCCCceEEEeCCCCC-----ceeeec
Confidence 5431 112334445566666554 4578999998766544432 268899999999999888 444444
Q ss_pred cCcceEEe
Q 001472 337 STSGFRST 344 (1072)
Q Consensus 337 stG~~r~i 344 (1072)
..-..|++
T Consensus 416 dD~raRFW 423 (430)
T KOG0640|consen 416 DDFRARFW 423 (430)
T ss_pred ccceeeee
Confidence 44434443
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-20 Score=218.60 Aligned_cols=330 Identities=19% Similarity=0.248 Sum_probs=271.7
Q ss_pred ccCceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCE-EEEEEcCCe
Q 001472 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVL-VLAGASTGV 81 (1072)
Q Consensus 3 ktGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~-LatGS~DGs 81 (1072)
++++.+.+|.+|...|+++.=+|-- ..++.|..+|+|.|+++..++.+..++...+.|+.++|..||.. +++|+..|.
T Consensus 190 rt~K~v~~f~~~~s~IT~ieqsPaL-DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~ 268 (910)
T KOG1539|consen 190 RTGKVVYTFQEFFSRITAIEQSPAL-DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGD 268 (910)
T ss_pred ccCcEEEEecccccceeEeccCCcc-eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCce
Confidence 5788999999999999999999987 78999999999999999999999999866699999999999975 555666799
Q ss_pred EEEEEcCCCeeEEEEe-CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eEEEEEecCCCCeEEEEEc-CCCC
Q 001472 82 IKLWDLEESKMVRTLT-GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK----GCIHTYKGHTRGINTIRFT-PDGR 155 (1072)
Q Consensus 82 I~IWDl~tgk~i~tl~-~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtg----k~v~~l~~h~~~VtsLafS-PDG~ 155 (1072)
+.+||++..+.+..+. .|.+.|....|.|....+++++.|..+++|=.+++ ..++.-.+|..+..|+.|. .+|.
T Consensus 269 m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~ 348 (910)
T KOG1539|consen 269 MAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGH 348 (910)
T ss_pred EEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcE
Confidence 9999999888877665 78899999999999999999999999888855543 2455556888899999988 5777
Q ss_pred EEEEEecCCeEEEEECC---------------------------------------------------------------
Q 001472 156 WVVSGGFDNVVKVWDLT--------------------------------------------------------------- 172 (1072)
Q Consensus 156 ~LaTGS~DGsI~IWDl~--------------------------------------------------------------- 172 (1072)
++.+++.|++++.+++.
T Consensus 349 ~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~ 428 (910)
T KOG1539|consen 349 FILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWN 428 (910)
T ss_pred EEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEe
Confidence 88888888876666542
Q ss_pred --CCce-EEEee-----ecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEee---CCCCCCeEEEEEeCCCCEE
Q 001472 173 --AGKL-LHDFK-----FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGST---RPEVTGVHAITFHPDGRTL 241 (1072)
Q Consensus 173 --tgk~-i~~~~-----~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~---~~h~~~VtsIafSPDG~~L 241 (1072)
.... .+.+. .....+++++.++.|++.+.|+..|.|-+|++.+|-....+ ..|.++|++++.+.-++.+
T Consensus 429 ~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~ 508 (910)
T KOG1539|consen 429 FRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLL 508 (910)
T ss_pred ccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceE
Confidence 1100 00011 12256889999999999999999999999999999888887 5888999999999988888
Q ss_pred EE-EECCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEE
Q 001472 242 FS-GFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKF 320 (1072)
Q Consensus 242 as-Gsdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaF 320 (1072)
++ |.+|-+++|++........+..+.............+++.+..|-.|.++|..+..+.... .+|...|++++|
T Consensus 509 vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f----~gh~nritd~~F 584 (910)
T KOG1539|consen 509 VSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF----WGHGNRITDMTF 584 (910)
T ss_pred EEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh----hccccceeeeEe
Confidence 87 5677799999999998888998888888888888889999999999999998776665544 578999999999
Q ss_pred CCCCCccceEEEEEeccCcceE
Q 001472 321 NPPGSHSLEKVGIIGRSTSGFR 342 (1072)
Q Consensus 321 SPDGs~lLa~VlaiG~stG~~r 342 (1072)
||||+ -+.+...++.++
T Consensus 585 S~Dgr-----WlisasmD~tIr 601 (910)
T KOG1539|consen 585 SPDGR-----WLISASMDSTIR 601 (910)
T ss_pred CCCCc-----EEEEeecCCcEE
Confidence 99999 444444444333
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=219.35 Aligned_cols=249 Identities=24% Similarity=0.424 Sum_probs=209.8
Q ss_pred EEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCc----------eEEEeeCCCCCeEEEEEcCCC-CEEEEEE
Q 001472 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT----------ALMSLCGLSSPVDSVAFDSAE-VLVLAGA 77 (1072)
Q Consensus 9 ~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~----------~l~sl~~hs~~ItsLafSPdG-~~LatGS 77 (1072)
....-|.+.|+-+.+-|..+.++++++..+.|.|||..+.. .-..+.+|...-++++|++.. -+|++++
T Consensus 118 ~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~ 197 (422)
T KOG0264|consen 118 SQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS 197 (422)
T ss_pred EEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc
Confidence 34457999999999999999999999999999999984421 223678898888899999844 5788999
Q ss_pred cCCeEEEEEcCCCe-------eEEEEeCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECC--CCeEEEEEecCCCCeEE
Q 001472 78 STGVIKLWDLEESK-------MVRTLTGHKSNCTAVEFHPF-GEFFASGCMDTNLKIWDIR--KKGCIHTYKGHTRGINT 147 (1072)
Q Consensus 78 ~DGsI~IWDl~tgk-------~i~tl~~h~~~VtsLafSPd-g~~LaSgs~DGsI~IWDlr--tgk~v~~l~~h~~~Vts 147 (1072)
.|+.|++||+.... ....+.+|...|..++|++. ...|++++.|+.+.|||++ +.++.+...+|...|.|
T Consensus 198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 99999999997432 34667899999999999995 4578889999999999999 56667778899999999
Q ss_pred EEEcC-CCCEEEEEecCCeEEEEECCCC-ceEEEeeecCCceEEEEEcCC-CcEEEEEECCCeEEEEECCCC--------
Q 001472 148 IRFTP-DGRWVVSGGFDNVVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETF-------- 216 (1072)
Q Consensus 148 LafSP-DG~~LaTGS~DGsI~IWDl~tg-k~i~~~~~h~g~ItsLafSPd-g~lLaTgS~DGtIrIWDl~tg-------- 216 (1072)
++|+| ++..||+|+.|++|.+||++.. +.+..+.+|...|.++.|+|+ ..+|++++.|+.+.+||+..-
T Consensus 278 ~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ed 357 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPED 357 (422)
T ss_pred EEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhh
Confidence 99999 5667899999999999999875 468889999999999999996 578999999999999999742
Q ss_pred ------cEEEeeCCCCCCeEEEEEeCCCCEEEEE--ECCcEEEEEecCC
Q 001472 217 ------ELIGSTRPEVTGVHAITFHPDGRTLFSG--FDDNLKVYSWEPV 257 (1072)
Q Consensus 217 ------e~i~~~~~h~~~VtsIafSPDG~~LasG--sdg~I~Vwd~~s~ 257 (1072)
+.+....+|...|..+.|+|...+++++ .|+.+.||.+...
T Consensus 358 a~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 358 AEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred hccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 2356677888999999999999888774 4556999998643
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-22 Score=231.11 Aligned_cols=289 Identities=21% Similarity=0.339 Sum_probs=238.6
Q ss_pred eEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCC--ceEEEeeCCCCCeEEEEE-cCCCCEEEEEEcCCeEE
Q 001472 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP--TALMSLCGLSSPVDSVAF-DSAEVLVLAGASTGVIK 83 (1072)
Q Consensus 7 ~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~--~~l~sl~~hs~~ItsLaf-SPdG~~LatGS~DGsI~ 83 (1072)
.+..+..|.++|+.+....++ +.|++++.|-+|++|+...+ -+...+..|...|.|+++ .++...+|+||-|+.|.
T Consensus 65 ~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~If 143 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIF 143 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEE
Confidence 366788999999999999998 68999999999999999776 466778899999999999 77888999999999999
Q ss_pred EEEcCCCe--eE--------EEEe-CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 001472 84 LWDLEESK--MV--------RTLT-GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP 152 (1072)
Q Consensus 84 IWDl~tgk--~i--------~tl~-~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSP 152 (1072)
+||+.++. .+ ..+. ++...|++++.++.|..|++|+..+.|++||.++++.+..+.+|...|.++..+.
T Consensus 144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d 223 (735)
T KOG0308|consen 144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND 223 (735)
T ss_pred EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC
Confidence 99999772 22 2223 7888999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEE
Q 001472 153 DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAI 232 (1072)
Q Consensus 153 DG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsI 232 (1072)
||..+++++.||+|++||+...+++.++..|...|+++..+|+-..+++|+.||.|+.=|+++......+.....+|..+
T Consensus 224 DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l 303 (735)
T KOG0308|consen 224 DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKL 303 (735)
T ss_pred CCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999865444444455667777
Q ss_pred EEeCC-CCEEEEEECCcEEEEEecCCeeec-------------------------ccccCCCeeeeEEecCCCEEEEEEc
Q 001472 233 TFHPD-GRTLFSGFDDNLKVYSWEPVICHD-------------------------SVDMGWSTLGDLCINDGKLLGCSFY 286 (1072)
Q Consensus 233 afSPD-G~~LasGsdg~I~Vwd~~s~~~~~-------------------------~l~~~~s~i~~l~spDGk~LAsgs~ 286 (1072)
..+.. ..+.++..++.|+-|......... .+.++..........|.+.+++-..
T Consensus 304 ~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa 383 (735)
T KOG0308|consen 304 HLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDA 383 (735)
T ss_pred hhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecC
Confidence 76633 333556667777777765322111 1122222222233357789999999
Q ss_pred CCeEEEEEcC
Q 001472 287 RNSVGIWVAD 296 (1072)
Q Consensus 287 DGsVrIWDld 296 (1072)
.|.+.+||+-
T Consensus 384 ~gnv~lwDIl 393 (735)
T KOG0308|consen 384 KGNVALWDIL 393 (735)
T ss_pred CCCEEEEEee
Confidence 9999999973
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.7e-20 Score=206.24 Aligned_cols=310 Identities=18% Similarity=0.250 Sum_probs=237.1
Q ss_pred EEEecCCCCeEEEEEecCCC-cEEEEE--ECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 001472 9 QEFVAHSANVNCISIGKKAC-RFLITG--GDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1072)
Q Consensus 9 ~~L~gHsg~Vt~IafSPdg~-~lLaTG--s~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IW 85 (1072)
+.+......|.|++|++-.+ .+|+.- +.+..+.+||...+.........+..|..+.|+|.+..|++.+..|.+.+|
T Consensus 148 ~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw 227 (626)
T KOG2106|consen 148 HVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFW 227 (626)
T ss_pred eeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEE
Confidence 33445667899999998543 444443 335568999999888888888788889999999977766666778999999
Q ss_pred EcCCCeeEEEE---eC-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 001472 86 DLEESKMVRTL---TG-HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGG 161 (1072)
Q Consensus 86 Dl~tgk~i~tl---~~-h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS 161 (1072)
+++.+...+.. .. ....|.|++|.++|+ +++|..+|.|.||+..+.+.......|.+.|.+++...+|. |++|+
T Consensus 228 ~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGg 305 (626)
T KOG2106|consen 228 TLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGG 305 (626)
T ss_pred EccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecC
Confidence 99988665432 22 235699999999998 78999999999999988887777779999999999999997 55599
Q ss_pred cCCeEEEEECCCCc----------------------e------------------EEEeeecCCceEEEEEcCCCcEEEE
Q 001472 162 FDNVVKVWDLTAGK----------------------L------------------LHDFKFHEGHIRSIDFHPLEFLLAT 201 (1072)
Q Consensus 162 ~DGsI~IWDl~tgk----------------------~------------------i~~~~~h~g~ItsLafSPdg~lLaT 201 (1072)
.|..|..||-.-.+ . .....+|......++.+|+.+.+++
T Consensus 306 KDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T 385 (626)
T KOG2106|consen 306 KDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLT 385 (626)
T ss_pred ccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheee
Confidence 99999999832100 0 0112356777889999999999999
Q ss_pred EECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEE-CCcEEEEEecCCeeecccccCCCeeeeEEecCCCE
Q 001472 202 GSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKL 280 (1072)
Q Consensus 202 gS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGs-dg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~ 280 (1072)
++.|+.+++|+ ..+...... ...+..++.|+|.| .++.|. .|...|.|.++...+.............++|+|.+
T Consensus 386 ~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~ 461 (626)
T KOG2106|consen 386 CGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAF 461 (626)
T ss_pred ccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCE
Confidence 99999999999 333433332 34678999999999 777775 55677888887655544444444555667799999
Q ss_pred EEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCc
Q 001472 281 LGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSH 326 (1072)
Q Consensus 281 LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~ 326 (1072)
||.|+.|+.|+||.++.....-..++. .+..+|+.+.||+|++.
T Consensus 462 lAvgs~d~~iyiy~Vs~~g~~y~r~~k--~~gs~ithLDwS~Ds~~ 505 (626)
T KOG2106|consen 462 LAVGSHDNHIYIYRVSANGRKYSRVGK--CSGSPITHLDWSSDSQF 505 (626)
T ss_pred EEEecCCCeEEEEEECCCCcEEEEeee--ecCceeEEeeecCCCce
Confidence 999999999999998766555444443 33489999999999993
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-20 Score=220.33 Aligned_cols=325 Identities=18% Similarity=0.281 Sum_probs=261.7
Q ss_pred ccCceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEee-CCCCCeEEEEEcCCCCEEEEEEcCCe
Q 001472 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLC-GLSSPVDSVAFDSAEVLVLAGASTGV 81 (1072)
Q Consensus 3 ktGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~-~hs~~ItsLafSPdG~~LatGS~DGs 81 (1072)
+.++.+..|+.-.+.|+.++|.-||..++++|+..|.+.+||++..+.+..+. .|.+.|....|.+....+++++.|+.
T Consensus 232 K~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnS 311 (910)
T KOG1539|consen 232 KFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNS 311 (910)
T ss_pred ccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCc
Confidence 45677788876679999999999999999999999999999999888777665 78899999999999999999999998
Q ss_pred EEEEEcC--CC--eeEEEEeCCCCCeEEEEEc-CCCCEEEEEeCCCeEEEEECC--------------------------
Q 001472 82 IKLWDLE--ES--KMVRTLTGHKSNCTAVEFH-PFGEFFASGCMDTNLKIWDIR-------------------------- 130 (1072)
Q Consensus 82 I~IWDl~--tg--k~i~tl~~h~~~VtsLafS-Pdg~~LaSgs~DGsI~IWDlr-------------------------- 130 (1072)
+++|=.+ +| +.++.-.+|..+-.|+.|. .+|.++.+++.|++++.+++.
T Consensus 312 lk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~ 391 (910)
T KOG1539|consen 312 LKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTE 391 (910)
T ss_pred eeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchh
Confidence 8888554 33 4556667888888888887 567778887777766655432
Q ss_pred ---------------------------------------CCeE-EEEEe-----cCCCCeEEEEEcCCCCEEEEEecCCe
Q 001472 131 ---------------------------------------KKGC-IHTYK-----GHTRGINTIRFTPDGRWVVSGGFDNV 165 (1072)
Q Consensus 131 ---------------------------------------tgk~-v~~l~-----~h~~~VtsLafSPDG~~LaTGS~DGs 165 (1072)
+... .+.+. .....+.+++.++.|++.+.|+..|.
T Consensus 392 ~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~ 471 (910)
T KOG1539|consen 392 KLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGT 471 (910)
T ss_pred hhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCe
Confidence 1111 01111 11245789999999999999999999
Q ss_pred EEEEECCCCceEEEe---eecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEE
Q 001472 166 VKVWDLTAGKLLHDF---KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242 (1072)
Q Consensus 166 I~IWDl~tgk~i~~~---~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~La 242 (1072)
|-+|++++|-....| ..|.++|+.++...-++.+++++.+|.+.+||+.+...+..+... ..+.++..+.....++
T Consensus 472 Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-~~~~~iv~hr~s~l~a 550 (910)
T KOG1539|consen 472 IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-SSITGIVYHRVSDLLA 550 (910)
T ss_pred EEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-CCcceeeeeehhhhhh
Confidence 999999999888888 589999999999988999999999999999999988877666543 5678888888777777
Q ss_pred EEECC-cEEEEEecCCeeecccccC-CCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEE
Q 001472 243 SGFDD-NLKVYSWEPVICHDSVDMG-WSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKF 320 (1072)
Q Consensus 243 sGsdg-~I~Vwd~~s~~~~~~l~~~-~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaF 320 (1072)
.+.++ .|.++|..+......+..+ .......+++||++|++++.|++|++||+.++.+-... ....+++.+.|
T Consensus 551 ~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~-----~vd~~~~sls~ 625 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL-----LVDSPCTSLSF 625 (910)
T ss_pred hhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE-----ecCCcceeeEE
Confidence 76554 6999999988888877744 45556677799999999999999999999887765443 34678999999
Q ss_pred CCCCCccceEEEEEeccC
Q 001472 321 NPPGSHSLEKVGIIGRST 338 (1072)
Q Consensus 321 SPDGs~lLa~VlaiG~st 338 (1072)
||.|+ .++..|.+
T Consensus 626 SPngD-----~LAT~Hvd 638 (910)
T KOG1539|consen 626 SPNGD-----FLATVHVD 638 (910)
T ss_pred CCCCC-----EEEEEEec
Confidence 99999 66666655
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=204.09 Aligned_cols=282 Identities=17% Similarity=0.267 Sum_probs=216.3
Q ss_pred EEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCce-----EEEeeCCCCCeEEEEEcCCCCEEEEEEc-CCeE
Q 001472 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTA-----LMSLCGLSSPVDSVAFDSAEVLVLAGAS-TGVI 82 (1072)
Q Consensus 9 ~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~-----l~sl~~hs~~ItsLafSPdG~~LatGS~-DGsI 82 (1072)
..|++|.+.|+|++|+.|| ++|++++.|+.|+||++.+... +.. ...-+..+.+.|.||.+-+++... ...|
T Consensus 80 ~~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEE
Confidence 4689999999999999999 8999999999999999865321 111 111235678999999886666554 4579
Q ss_pred EEEEcCC---CeeEE---------EEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEE
Q 001472 83 KLWDLEE---SKMVR---------TLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150 (1072)
Q Consensus 83 ~IWDl~t---gk~i~---------tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLaf 150 (1072)
++|.+.. |.... .-..|.-.+..+-...++.+|++++.|..|.+|+++ |+.+..+......-+..+.
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 9997643 22111 112355567777777788999999999999999998 8888888777777788999
Q ss_pred cCCCCEEEEEecCCeEEEEECCC---C-----ceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCC----Cc-
Q 001472 151 TPDGRWVVSGGFDNVVKVWDLTA---G-----KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET----FE- 217 (1072)
Q Consensus 151 SPDG~~LaTGS~DGsI~IWDl~t---g-----k~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~t----ge- 217 (1072)
+|+|+++++++..--|++|.+-- | ..+.++++|...|..++|+++...+++.+.||++++||++- ++
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 99999999999999999998632 2 24567889999999999999999999999999999999862 11
Q ss_pred --EEEee----CCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCCeeecccc--cCCCeeeeEEecCCCEEEEEEcCCe
Q 001472 218 --LIGST----RPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVD--MGWSTLGDLCINDGKLLGCSFYRNS 289 (1072)
Q Consensus 218 --~i~~~----~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~--~~~s~i~~l~spDGk~LAsgs~DGs 289 (1072)
.+... ....+....+.++|.|+.|+++....+++|.-+.+.....+. ....+.+..|.++|+++++++ |..
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~ 395 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRY 395 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-cee
Confidence 11111 112233458999999999999999999999988866555443 233455667779999999985 777
Q ss_pred EEEEE
Q 001472 290 VGIWV 294 (1072)
Q Consensus 290 VrIWD 294 (1072)
++++.
T Consensus 396 vrv~~ 400 (420)
T KOG2096|consen 396 VRVIR 400 (420)
T ss_pred eeeec
Confidence 88875
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=224.60 Aligned_cols=276 Identities=17% Similarity=0.283 Sum_probs=228.8
Q ss_pred ecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCC-ceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 001472 12 VAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP-TALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES 90 (1072)
Q Consensus 12 ~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~-~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tg 90 (1072)
.+|.+.-+.|+|.|+| .+|++++.||.|++|+.... .....+..+...|.+++. ++.+|++|+.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCC-CEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCC
Confidence 3789999999999999 69999999999999987655 444455546777777765 4569999999999999999888
Q ss_pred eeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEE
Q 001472 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWD 170 (1072)
Q Consensus 91 k~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWD 170 (1072)
+.-..+....-++.+++|+.+|+++|.|+.|-.|++.++.+......+.+|..+|.++.|+|.+.+||+.+.||.|++||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 76655666677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeee-------c-CCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCC--CCCeEEEEEeCCCCE
Q 001472 171 LTAGKLLHDFKF-------H-EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPE--VTGVHAITFHPDGRT 240 (1072)
Q Consensus 171 l~tgk~i~~~~~-------h-~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h--~~~VtsIafSPDG~~ 240 (1072)
+.++.+...+.+ . ...+..++|+|+|..|+..+.|+.|.+|+...++....+... ...+..++|+|.|+|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 999877665542 1 344678899999888888889999999999999988777543 345899999999999
Q ss_pred EEEE-ECCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCCeEEEE
Q 001472 241 LFSG-FDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIW 293 (1072)
Q Consensus 241 LasG-sdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrIW 293 (1072)
||++ .++.|.||++++.. .......+++..|-+++..+-+....|...+|
T Consensus 247 iAAs~~~g~I~vWnv~t~~---~~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDTHE---RHEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EeeeccCCcEEEEecccch---hccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9997 57789999999832 22333455556666788777776667766666
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-21 Score=204.30 Aligned_cols=268 Identities=16% Similarity=0.229 Sum_probs=208.8
Q ss_pred cCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCC-ce-EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 001472 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP-TA-LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES 90 (1072)
Q Consensus 13 gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~-~~-l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tg 90 (1072)
.-.+.|.+|+|||....+++.|+.||+|++|++... .. -.....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 346789999999966578889999999999999763 22 2345678999999999999999999999999999999999
Q ss_pred eeEEEEeCCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEE
Q 001472 91 KMVRTLTGHKSNCTAVEFHPFGE--FFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKV 168 (1072)
Q Consensus 91 k~i~tl~~h~~~VtsLafSPdg~--~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~I 168 (1072)
+. ..+..|.++|.++.|-+... .|++|+.|++|++||.+....+..+.. ...++++..- ..+++++..+..|.+
T Consensus 105 Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~--~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 QV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL--YPMAVVATAERHIAV 180 (347)
T ss_pred Ce-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhcc--CceeEEEecCCcEEE
Confidence 54 55667999999999987665 899999999999999999999988873 4557776664 347888888999999
Q ss_pred EECCCCceEEE-ee-ecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCC--cEEEeeCCCC---------CCeEEEEEe
Q 001472 169 WDLTAGKLLHD-FK-FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF--ELIGSTRPEV---------TGVHAITFH 235 (1072)
Q Consensus 169 WDl~tgk~i~~-~~-~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tg--e~i~~~~~h~---------~~VtsIafS 235 (1072)
|+++.+..... +. ...-.+.|++..++....+.|+..|.+.|..+..+ +.-..++.|. -.|.+|+|+
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh 260 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH 260 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee
Confidence 99977643221 11 12345889999998888899999999999988875 2222333332 247899999
Q ss_pred CCCCEEEE-EECCcEEEEEecCCeeecccccCCCe-eeeEEecCCCEEEEE
Q 001472 236 PDGRTLFS-GFDDNLKVYSWEPVICHDSVDMGWST-LGDLCINDGKLLGCS 284 (1072)
Q Consensus 236 PDG~~Las-Gsdg~I~Vwd~~s~~~~~~l~~~~s~-i~~l~spDGk~LAsg 284 (1072)
|.-..|++ |+||.+.+||-+....+........+ ..+.+..+|.++|.+
T Consensus 261 P~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 261 PVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred cccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 97555554 89999999999877666665544444 445555788887765
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-21 Score=206.91 Aligned_cols=274 Identities=17% Similarity=0.314 Sum_probs=234.1
Q ss_pred eEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001472 50 ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDI 129 (1072)
Q Consensus 50 ~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDl 129 (1072)
....+.+|...|+.++-......+.+++.|.+-+||.+++|.++..+.+|.+.|.++.|++.+.++++++.|++-.||..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 44567899999999998877788999999999999999999999999999999999999999999999999999999962
Q ss_pred ------CC----------------------------------CeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEE
Q 001472 130 ------RK----------------------------------KGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW 169 (1072)
Q Consensus 130 ------rt----------------------------------gk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IW 169 (1072)
.. ..++..+.+|...|.+..|...|+.+++++.|.+-.+|
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence 10 01345677899999999999999999999999999999
Q ss_pred ECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCC-CcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCc
Q 001472 170 DLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET-FELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN 248 (1072)
Q Consensus 170 Dl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~t-ge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~ 248 (1072)
|+++|+++..+.+|+...+.++-+|..+++++.+.|.+.++||++. -..+..|.+|...|+++.|.-|.+.+..+.|..
T Consensus 300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrT 379 (481)
T KOG0300|consen 300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRT 379 (481)
T ss_pred eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCce
Confidence 9999999999999999999999999999999999999999999984 345778999999999999998866544444557
Q ss_pred EEEEEecCCe-eecccccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCC
Q 001472 249 LKVYSWEPVI-CHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPP 323 (1072)
Q Consensus 249 I~Vwd~~s~~-~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPD 323 (1072)
++|||+++.. .+..+...........+..+.+|+.--.+..|++||+.+..+..+......+|...+.|++|..+
T Consensus 380 vKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee 455 (481)
T KOG0300|consen 380 VKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE 455 (481)
T ss_pred EEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeecccc
Confidence 9999998754 45555555555555666666788888788899999999888877765556789999999999864
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=223.39 Aligned_cols=261 Identities=16% Similarity=0.226 Sum_probs=216.4
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC-eeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 001472 55 CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES-KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG 133 (1072)
Q Consensus 55 ~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tg-k~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk 133 (1072)
..|..+.+.++|.++|.+|++++.||.|++|+.... +.-..+..+...|.+++.. +.+|++|+.++.|.+|.+..+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 357888899999999999999999999999987654 3333333367777777665 5689999999999999999887
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEEC
Q 001472 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213 (1072)
Q Consensus 134 ~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl 213 (1072)
.-..+....-++.+++|+.+|++++.|+.|-.|++.++........+.+|.++|.++.|+|.+++||+.+.||.|++||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 66556556678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEeeCCC--------CCCeEEEEEeCC-CCEEEEEECCcEEEEEecCCeeecccccC---CCeeeeEEecCCCEE
Q 001472 214 ETFELIGSTRPE--------VTGVHAITFHPD-GRTLFSGFDDNLKVYSWEPVICHDSVDMG---WSTLGDLCINDGKLL 281 (1072)
Q Consensus 214 ~tge~i~~~~~h--------~~~VtsIafSPD-G~~LasGsdg~I~Vwd~~s~~~~~~l~~~---~s~i~~l~spDGk~L 281 (1072)
.++.+...+..- ...+..++|+|+ |.+++.+.++.|++|+.........+... .......|+|+|+||
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI 247 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence 988766554321 234678999999 66667789999999998877765554322 225566788999999
Q ss_pred EEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCC
Q 001472 282 GCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 282 Asgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs 325 (1072)
|+++.||.|.|||+++... ......|.+++|.|+++
T Consensus 248 AAs~~~g~I~vWnv~t~~~--------~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 248 AASTLDGQILVWNVDTHER--------HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred eeeccCCcEEEEecccchh--------ccccceeEEEecCCCCC
Confidence 9999999999999986221 23467899999999998
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8e-21 Score=213.42 Aligned_cols=231 Identities=23% Similarity=0.447 Sum_probs=204.3
Q ss_pred ecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe
Q 001472 12 VAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK 91 (1072)
Q Consensus 12 ~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk 91 (1072)
.+|...|.|++.++|| +||++|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....|++++.|+.|++|+++...
T Consensus 199 ~~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred ccccceeEEEEEcCCC-cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence 4899999999999999 999999999999999999999999999999999999999888899999999999999999998
Q ss_pred eEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEEC
Q 001472 92 MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171 (1072)
Q Consensus 92 ~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl 171 (1072)
.+.++.+|++.|..+....-++.+.+|+.|.++++|++.. .....+.++.+.+-|++|-.+ ..|++|+.+|.|.+|++
T Consensus 278 ~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSL 355 (479)
T ss_pred HHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeee
Confidence 9999999999999999998888888888999999999943 334556778888999999865 56999999999999999
Q ss_pred CCCceEEEeee-c-----------CCceEEEEEcCCCcEEEEEECCCeEEEEECCCC----cEEEeeCCCCCCeEEEEEe
Q 001472 172 TAGKLLHDFKF-H-----------EGHIRSIDFHPLEFLLATGSADRTVKFWDLETF----ELIGSTRPEVTGVHAITFH 235 (1072)
Q Consensus 172 ~tgk~i~~~~~-h-----------~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tg----e~i~~~~~h~~~VtsIafS 235 (1072)
...+++..... | ..+|++++..|...++++|+.+|.|++|-+..+ +++..+. ..+.|++++|+
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~ 434 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFS 434 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEc
Confidence 99888776652 1 127999999999999999999999999998876 3444444 56789999999
Q ss_pred CCCCEEEEEEC
Q 001472 236 PDGRTLFSGFD 246 (1072)
Q Consensus 236 PDG~~LasGsd 246 (1072)
++|+++++|..
T Consensus 435 ~sgk~ivagiG 445 (479)
T KOG0299|consen 435 NSGKRIVAGIG 445 (479)
T ss_pred cCCCEEEEecc
Confidence 99998888743
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-18 Score=203.58 Aligned_cols=355 Identities=15% Similarity=0.211 Sum_probs=266.0
Q ss_pred EEEEecCC-CCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 001472 8 LQEFVAHS-ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWD 86 (1072)
Q Consensus 8 I~~L~gHs-g~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWD 86 (1072)
...+.||. +.|-+++|++.+ .|++.+.+|.|.-||+.+++.+..+....+.|++++.+|.+..+++||.||.+..++
T Consensus 61 ~~vi~g~~drsIE~L~W~e~~--RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s 138 (691)
T KOG2048|consen 61 EPVIHGPEDRSIESLAWAEGG--RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFS 138 (691)
T ss_pred eEEEecCCCCceeeEEEccCC--eEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEe
Confidence 34566665 589999999655 688999999999999999999999999999999999999999999999999888888
Q ss_pred cCCCeeEEE--EeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe--------cCCCCeEEEEEcCCCCE
Q 001472 87 LEESKMVRT--LTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK--------GHTRGINTIRFTPDGRW 156 (1072)
Q Consensus 87 l~tgk~i~t--l~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~--------~h~~~VtsLafSPDG~~ 156 (1072)
...++.... +....+.|.++.|+|++..++.|+.||.|++||...+..++... ....-|+++.|..++ .
T Consensus 139 ~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-t 217 (691)
T KOG2048|consen 139 IGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-T 217 (691)
T ss_pred cCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-c
Confidence 877765433 33456889999999999999999999999999999988776322 123347888888776 5
Q ss_pred EEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcE-----------------E
Q 001472 157 VVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFEL-----------------I 219 (1072)
Q Consensus 157 LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~-----------------i 219 (1072)
|++|+..|.|.+||...+.+++.+..|.+.|.+++..++++.+++++.|+.|..|...+... +
T Consensus 218 I~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~ 297 (691)
T KOG2048|consen 218 IASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSM 297 (691)
T ss_pred EEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceee
Confidence 99999999999999999999999999999999999999999999999999877665432210 0
Q ss_pred ------------------------------------------------------------------------------Ee
Q 001472 220 ------------------------------------------------------------------------------GS 221 (1072)
Q Consensus 220 ------------------------------------------------------------------------------~~ 221 (1072)
+.
T Consensus 298 av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl 377 (691)
T KOG2048|consen 298 AVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKL 377 (691)
T ss_pred eeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheee
Confidence 00
Q ss_pred eCCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCCeeeccccc------CCCeeeeEEecCCCEEEEEE-cCCeEEEEE
Q 001472 222 TRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDM------GWSTLGDLCINDGKLLGCSF-YRNSVGIWV 294 (1072)
Q Consensus 222 ~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~------~~s~i~~l~spDGk~LAsgs-~DGsVrIWD 294 (1072)
.......|.+.+.+|+|++++.+.-...+||.+........... ........++-|+..++..+ ....+.+++
T Consensus 378 ~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~e 457 (691)
T KOG2048|consen 378 FTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFE 457 (691)
T ss_pred ecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEE
Confidence 00011236788899999999998877788888876332222111 11333445556666655555 778888888
Q ss_pred cCCCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcceEEeecCCcccceEEEeecCCCCccceeeeecCC
Q 001472 295 ADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDSTGGKPVASQKIGPL 374 (1072)
Q Consensus 295 lds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD~et~eI~~i~iDs~gGepv~~~~~sP~ 374 (1072)
++....+.+.-..+.+....|..+.-||||+. +.+.++..+ +++.+.++++....... -..++....+.|+
T Consensus 458 l~~ps~kel~~~~~~~~~~~I~~l~~SsdG~y----iaa~~t~g~---I~v~nl~~~~~~~l~~r--ln~~vTa~~~~~~ 528 (691)
T KOG2048|consen 458 LETPSFKELKSIQSQAKCPSISRLVVSSDGNY----IAAISTRGQ---IFVYNLETLESHLLKVR--LNIDVTAAAFSPF 528 (691)
T ss_pred ecCcchhhhhccccccCCCcceeEEEcCCCCE----EEEEeccce---EEEEEcccceeecchhc--cCcceeeeecccc
Confidence 87666655544444566789999999999994 555554444 66666666666655544 3355556666655
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-20 Score=214.26 Aligned_cols=238 Identities=22% Similarity=0.426 Sum_probs=213.7
Q ss_pred EEEecCCCCeEE-EEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001472 9 QEFVAHSANVNC-ISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87 (1072)
Q Consensus 9 ~~L~gHsg~Vt~-IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl 87 (1072)
+.+.+|.+.|.+ ++|-+..+..|++|+.|++|.+|......++..+.+|...|+|++...++. +++|+.|.++++|-.
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI 129 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc
Confidence 447788888888 888764335699999999999999999999999999999999999888887 999999999999975
Q ss_pred CCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEE
Q 001472 88 EESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVK 167 (1072)
Q Consensus 88 ~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~ 167 (1072)
+++...+.+|...|+++.+.|.+ .+++|+.|..|++|.- ++.+.++.+|.+.|+.+++.+++. |++++.||.|+
T Consensus 130 --~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir 203 (745)
T KOG0301|consen 130 --GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIR 203 (745)
T ss_pred --hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEE
Confidence 56667799999999999999988 7999999999999974 788999999999999999998765 88999999999
Q ss_pred EEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECC
Q 001472 168 VWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247 (1072)
Q Consensus 168 IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg 247 (1072)
+|++ +|+.+..+.+|...+++++...++..+++++.|++++||+.. ++...+......|+++.+-++|..++.|+||
T Consensus 204 ~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG 280 (745)
T KOG0301|consen 204 LWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDG 280 (745)
T ss_pred EEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCc
Confidence 9998 799999999999999999987888899999999999999976 6777777666789999999999999999999
Q ss_pred cEEEEEecC
Q 001472 248 NLKVYSWEP 256 (1072)
Q Consensus 248 ~I~Vwd~~s 256 (1072)
.++||..+.
T Consensus 281 ~VrVfT~~k 289 (745)
T KOG0301|consen 281 RVRVFTVDK 289 (745)
T ss_pred eEEEEEecc
Confidence 999999874
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-20 Score=212.98 Aligned_cols=320 Identities=17% Similarity=0.161 Sum_probs=246.2
Q ss_pred EEEEEecCCCcEEEEEECCCeEEEEECCCCce---EEEeeCCCCCeEEEEEcCC-----------CCEEEEEEcCCeEEE
Q 001472 19 NCISIGKKACRFLITGGDDQKVNLWAIGKPTA---LMSLCGLSSPVDSVAFDSA-----------EVLVLAGASTGVIKL 84 (1072)
Q Consensus 19 t~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~---l~sl~~hs~~ItsLafSPd-----------G~~LatGS~DGsI~I 84 (1072)
.++.|++.. ..|.+...|..++|||+.+... ...+.-|...|+.+.--|- ...+++++.||+|++
T Consensus 328 IA~~Fdet~-~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 328 IACQFDETT-DKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eEEEecCCC-ceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 355788777 6788899999999999965443 3444567877877765441 125889999999999
Q ss_pred EEcCCCe---eEE----------------------------------EEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 001472 85 WDLEESK---MVR----------------------------------TLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIW 127 (1072)
Q Consensus 85 WDl~tgk---~i~----------------------------------tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IW 127 (1072)
||+..+. ..+ ........+.+++.+|+|++|++|..-|.|+||
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 9997521 100 001123468999999999999999999999999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEcC---CCCEEEEEecCCeEEEEECCC-CceEEEeeecCCceEEEEEcCCC--cEEEE
Q 001472 128 DIRKKGCIHTYKGHTRGINTIRFTP---DGRWVVSGGFDNVVKVWDLTA-GKLLHDFKFHEGHIRSIDFHPLE--FLLAT 201 (1072)
Q Consensus 128 Dlrtgk~v~~l~~h~~~VtsLafSP---DG~~LaTGS~DGsI~IWDl~t-gk~i~~~~~h~g~ItsLafSPdg--~lLaT 201 (1072)
++..-.....+..|...|.|+.|+. ..++|++++.|..|+|||+.. ..++.++.+|...|+++.|.-.| ..+++
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis 566 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS 566 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe
Confidence 9999888888999999999999986 356899999999999999864 45678889999999999998877 77889
Q ss_pred EECCCeEEEEECCCCcEEEee-----CCCCCCeEEEEEeCCCCEEEEE-ECCcEEEEEecCCeeecccccC----CCeee
Q 001472 202 GSADRTVKFWDLETFELIGST-----RPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDMG----WSTLG 271 (1072)
Q Consensus 202 gS~DGtIrIWDl~tge~i~~~-----~~h~~~VtsIafSPDG~~LasG-sdg~I~Vwd~~s~~~~~~l~~~----~s~i~ 271 (1072)
++.|..|.+--.........+ ......++.++..|..++++++ .|.+|+||+++.++..+.+... ...+.
T Consensus 567 cGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK 646 (1080)
T KOG1408|consen 567 CGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK 646 (1080)
T ss_pred ccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEE
Confidence 999988766544321111111 1223568999999999999885 6778999999999887776543 34556
Q ss_pred eEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcceEEeecC
Q 001472 272 DLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPD 347 (1072)
Q Consensus 272 ~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD 347 (1072)
...-|.|-|||++..|.++.++|.-.+.....+ .+|...|+.+.|.+|-+|+ +.+....-.+.|-+|-
T Consensus 647 v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m----~GHsE~VTG~kF~nDCkHl----ISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 647 VILDPSGIYLATSCSDKTLCFVDFVSGECVAQM----TGHSEAVTGVKFLNDCKHL----ISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEECCCccEEEEeecCCceEEEEeccchhhhhh----cCcchheeeeeecccchhh----eeecCCceEEEEECch
Confidence 666799999999999999999999888776665 5889999999999999984 3333444444455544
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=200.60 Aligned_cols=301 Identities=15% Similarity=0.217 Sum_probs=222.3
Q ss_pred eEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEe
Q 001472 18 VNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT 97 (1072)
Q Consensus 18 Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~ 97 (1072)
-.|+.|++.| .+||+|+.||.|.|||+.+......+.+|..+|.+++||++|+.|++++.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWG-DYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCc-ceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 7899999999 899999999999999999998888899999999999999999999999999999999999999988887
Q ss_pred CCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEEec--C----CCCeEEEEEcCCCCEEEEEecCCeEEEEE
Q 001472 98 GHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKKGCIHTYKG--H----TRGINTIRFTPDGRWVVSGGFDNVVKVWD 170 (1072)
Q Consensus 98 ~h~~~VtsLafSPdg~-~LaSgs~DGsI~IWDlrtgk~v~~l~~--h----~~~VtsLafSPDG~~LaTGS~DGsI~IWD 170 (1072)
...+|+.+.|+|... .+++.-.+..-.+.++.... +.+-. . .....+..|.+.|+|+++|...|.+.+||
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 688999999999554 33333334445555554422 22211 1 11233456889999999999999999999
Q ss_pred CCCCceEEEeeecC-CceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEE---------EeeCC--CCCCeEEEEEeCCC
Q 001472 171 LTAGKLLHDFKFHE-GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELI---------GSTRP--EVTGVHAITFHPDG 238 (1072)
Q Consensus 171 l~tgk~i~~~~~h~-g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i---------~~~~~--h~~~VtsIafSPDG 238 (1072)
..+.+++..++... ..|.++-++..|.+|++-+.|..|+.|++..-... .++.. ....-.+++|+.+|
T Consensus 182 a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 182 AETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred cchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 99999999888665 77899999999999999999999999998731111 11110 11234688999999
Q ss_pred CEEEEEECC--cEEEEEecCCeeecccccCC-Ce-eeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCC
Q 001472 239 RTLFSGFDD--NLKVYSWEPVICHDSVDMGW-ST-LGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSI 314 (1072)
Q Consensus 239 ~~LasGsdg--~I~Vwd~~s~~~~~~l~~~~-s~-i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ 314 (1072)
.|+++|+.. .++||.-..+..++.+.... .. +...|.|-...+++- ..|.|+||.... ...+
T Consensus 262 eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~--~enw----------- 327 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ--VENW----------- 327 (405)
T ss_pred cEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec--ccch-----------
Confidence 999998754 37888777777777765543 22 223333444445544 789999996531 1112
Q ss_pred eeEEEECCCCCccceEEEEEeccCc
Q 001472 315 CTEVKFNPPGSHSLEKVGIIGRSTS 339 (1072)
Q Consensus 315 ItsVaFSPDGs~lLa~VlaiG~stG 339 (1072)
-+|+||-..+-..+...-..++
T Consensus 328 ---safAPdFqeleeNieY~EkEde 349 (405)
T KOG1273|consen 328 ---SAFAPDFQELEENIEYEEKEDE 349 (405)
T ss_pred ---hhcCchHHHHHhhhhhcccccc
Confidence 2567766655555554444444
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-20 Score=214.41 Aligned_cols=292 Identities=19% Similarity=0.270 Sum_probs=234.5
Q ss_pred ceEEEEecCCCCeEEEEEecCC----------CcEEEEEECCCeEEEEECCCCceEE-----------------------
Q 001472 6 YKLQEFVAHSANVNCISIGKKA----------CRFLITGGDDQKVNLWAIGKPTALM----------------------- 52 (1072)
Q Consensus 6 k~I~~L~gHsg~Vt~IafSPdg----------~~lLaTGs~DGtV~IWDl~t~~~l~----------------------- 52 (1072)
.+...+..|...|+.+..-|-+ ...+++++.||+|++|++..+..-.
T Consensus 360 gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~ 439 (1080)
T KOG1408|consen 360 GKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQI 439 (1080)
T ss_pred cceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhh
Confidence 3456678899999998766621 1258999999999999985421100
Q ss_pred --------------EeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcC---CCCEE
Q 001472 53 --------------SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHP---FGEFF 115 (1072)
Q Consensus 53 --------------sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSP---dg~~L 115 (1072)
...+....+.+++.+|+|++|++|...|.|+||++..-+....+..|...|.|+.|+. ..++|
T Consensus 440 ~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLL 519 (1080)
T KOG1408|consen 440 MHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLL 519 (1080)
T ss_pred hhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhh
Confidence 0012234699999999999999999999999999999988888999999999999985 24689
Q ss_pred EEEeCCCeEEEEECCC-CeEEEEEecCCCCeEEEEEcCCC--CEEEEEecCCeEEEEECCCCceEEEee-----ecCCce
Q 001472 116 ASGCMDTNLKIWDIRK-KGCIHTYKGHTRGINTIRFTPDG--RWVVSGGFDNVVKVWDLTAGKLLHDFK-----FHEGHI 187 (1072)
Q Consensus 116 aSgs~DGsI~IWDlrt-gk~v~~l~~h~~~VtsLafSPDG--~~LaTGS~DGsI~IWDl~tgk~i~~~~-----~h~g~I 187 (1072)
++++.|..|+|||+.. -..+.++.+|...|+++.|--.| ..+++++.|..|.+--.+.......|. .....+
T Consensus 520 ASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTl 599 (1080)
T KOG1408|consen 520 ASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTL 599 (1080)
T ss_pred hhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceE
Confidence 9999999999999864 35678889999999999998877 678899999877554333211111222 124568
Q ss_pred EEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCC---CCCCeEEEEEeCCCCEEEEE-ECCcEEEEEecCCeeeccc
Q 001472 188 RSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP---EVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSV 263 (1072)
Q Consensus 188 tsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~---h~~~VtsIafSPDG~~LasG-sdg~I~Vwd~~s~~~~~~l 263 (1072)
+.++..|..+++++++.|..|+|||+.+++..+.|++ |.+....+...|.|.||++. +|.++.+||+-++.|...+
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m 679 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM 679 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence 9999999999999999999999999999999988865 45678899999999999985 7788999999999998887
Q ss_pred ccCCCee-eeEEecCCCEEEEEEcCCeEEEEEcCC
Q 001472 264 DMGWSTL-GDLCINDGKLLGCSFYRNSVGIWVADV 297 (1072)
Q Consensus 264 ~~~~s~i-~~l~spDGk~LAsgs~DGsVrIWDlds 297 (1072)
..+...+ +..|.+|-+.|++.+.||+|.||.+..
T Consensus 680 ~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 680 TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 7665554 556678999999999999999998753
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=194.95 Aligned_cols=264 Identities=18% Similarity=0.302 Sum_probs=204.0
Q ss_pred eCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEcCC-CeeE-EEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001472 55 CGLSSPVDSVAFDS-AEVLVLAGASTGVIKLWDLEE-SKMV-RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK 131 (1072)
Q Consensus 55 ~~hs~~ItsLafSP-dG~~LatGS~DGsI~IWDl~t-gk~i-~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrt 131 (1072)
......|.+++||| ...++++|+.||+|++|+++. |..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 34567899999999 556777999999999999986 3332 33456899999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCC--EEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEE
Q 001472 132 KGCIHTYKGHTRGINTIRFTPDGR--WVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVK 209 (1072)
Q Consensus 132 gk~v~~l~~h~~~VtsLafSPDG~--~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIr 209 (1072)
++ +..+..|..+|.++.|-+... .|++|+.|.+|++||++...++..+.. ...++++..- ..+++++..++.|.
T Consensus 104 ~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~--~pm~vVata~r~i~ 179 (347)
T KOG0647|consen 104 GQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL--YPMAVVATAERHIA 179 (347)
T ss_pred CC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhcc--CceeEEEecCCcEE
Confidence 95 566677999999999988655 899999999999999999999988874 4456666543 46788889999999
Q ss_pred EEECCCCcEEEee--CCCCCCeEEEEEeCCCCEEEEE-ECCcEEEEEecCC--------eeeccccc----CCCeeeeEE
Q 001472 210 FWDLETFELIGST--RPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPV--------ICHDSVDM----GWSTLGDLC 274 (1072)
Q Consensus 210 IWDl~tge~i~~~--~~h~~~VtsIafSPDG~~LasG-sdg~I~Vwd~~s~--------~~~~~l~~----~~s~i~~l~ 274 (1072)
+|++.++...... .+....+++++...|+...+.| -+|.+.|..++.. +||..... -+.+....|
T Consensus 180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 180 VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEe
Confidence 9999875432221 2233458999988887766665 4677888877764 34543211 233445566
Q ss_pred ecCCCEEEEEEcCCeEEEEEcCCCc-eeeeecCCCCCCCCCeeEEEECCCCCcc
Q 001472 275 INDGKLLGCSFYRNSVGIWVADVSH-VEPYGVGAPEPDQSICTEVKFNPPGSHS 327 (1072)
Q Consensus 275 spDGk~LAsgs~DGsVrIWDlds~~-l~~~~v~~~~~~~~~ItsVaFSPDGs~l 327 (1072)
.|.-..|++++.||.+.+||-+... +..+ ..+..+|++.+|+-+|+..
T Consensus 260 hP~hgtlvTaGsDGtf~FWDkdar~kLk~s-----~~~~qpItcc~fn~~G~if 308 (347)
T KOG0647|consen 260 HPVHGTLVTAGSDGTFSFWDKDARTKLKTS-----ETHPQPITCCSFNRNGSIF 308 (347)
T ss_pred ecccceEEEecCCceEEEecchhhhhhhcc-----CcCCCccceeEecCCCCEE
Confidence 7888899999999999999976443 2222 5778999999999999943
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-19 Score=194.94 Aligned_cols=265 Identities=18% Similarity=0.212 Sum_probs=211.2
Q ss_pred CCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeE
Q 001472 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMV 93 (1072)
Q Consensus 14 Hsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i 93 (1072)
..+.|..+.|+|.+ ..|++++.||.+++||+........+. |..++.+++|.+ ...+++|+.||.|+.+|+.++...
T Consensus 12 P~d~IS~v~f~~~~-~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSS-SDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred ChhceeeEEEcCcC-CcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce
Confidence 36789999999887 667777899999999998775555454 899999999986 667899999999999999988765
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 001472 94 RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTA 173 (1072)
Q Consensus 94 ~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~t 173 (1072)
. +..|...|.|+.+++....+++|++|+.|++||.+.......+.. ...|.++... |..|++|+.+..+.+||+++
T Consensus 89 ~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 89 Q-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred e-eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence 4 445999999999999888999999999999999997666666653 3478888876 66899999999999999998
Q ss_pred CceEEEee--ecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCC----cEEEeeCCCC---------CCeEEEEEeCCC
Q 001472 174 GKLLHDFK--FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF----ELIGSTRPEV---------TGVHAITFHPDG 238 (1072)
Q Consensus 174 gk~i~~~~--~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tg----e~i~~~~~h~---------~~VtsIafSPDG 238 (1072)
.....+.. .....+.++++.|++.-+++++.||.|.+=.++.. ..-..|..|. -+|.+|+|+|--
T Consensus 165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~ 244 (323)
T KOG1036|consen 165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH 244 (323)
T ss_pred ccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence 76544322 23456899999998888999999999887666544 2223333332 268999999988
Q ss_pred CEEEEE-ECCcEEEEEecCCeeecccccC-CCeeeeEEecCCCEEEEEE
Q 001472 239 RTLFSG-FDDNLKVYSWEPVICHDSVDMG-WSTLGDLCINDGKLLGCSF 285 (1072)
Q Consensus 239 ~~LasG-sdg~I~Vwd~~s~~~~~~l~~~-~s~i~~l~spDGk~LAsgs 285 (1072)
..|++| +||-+.+||..+.+-...+..- .++....|+.||..||+++
T Consensus 245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 888885 6777999999887766655443 4567777889999999986
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-20 Score=222.69 Aligned_cols=208 Identities=23% Similarity=0.381 Sum_probs=178.0
Q ss_pred CceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcC-CCCEEEEEEcCCeEE
Q 001472 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDS-AEVLVLAGASTGVIK 83 (1072)
Q Consensus 5 Gk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSP-dG~~LatGS~DGsI~ 83 (1072)
.++++.|.||.+.|..|.|+.++ +|++++.|.+|+||++....++..+. |...|+|++|+| |.+||++|+-||.|+
T Consensus 359 ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvR 435 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVR 435 (712)
T ss_pred ccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceE
Confidence 35678999999999999999986 99999999999999999999988887 999999999999 889999999999999
Q ss_pred EEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec--------CCCCeEEEEEcCC-C
Q 001472 84 LWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG--------HTRGINTIRFTPD-G 154 (1072)
Q Consensus 84 IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~--------h~~~VtsLafSPD-G 154 (1072)
||++...+.+.... ..+-|++++|.|||++.++|+.+|.+++|+....+....+.- ....|+.+.|.|. .
T Consensus 436 iWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~ 514 (712)
T KOG0283|consen 436 LWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDP 514 (712)
T ss_pred EeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCC
Confidence 99998877665444 458899999999999999999999999999987776544321 1236999999983 3
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEeeecCC--ceEEEEEcCCCcEEEEEECCCeEEEEECCCC
Q 001472 155 RWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG--HIRSIDFHPLEFLLATGSADRTVKFWDLETF 216 (1072)
Q Consensus 155 ~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g--~ItsLafSPdg~lLaTgS~DGtIrIWDl~tg 216 (1072)
..+++.+.|..|+|||.+...++..|+++.. .-....|+.||++|++++.|..|++|++...
T Consensus 515 ~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 515 DEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 3577778899999999998898888886542 2345678899999999999999999998543
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-20 Score=196.40 Aligned_cols=244 Identities=21% Similarity=0.361 Sum_probs=200.4
Q ss_pred EecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCC---ceEEEeeCCCCCeEEEEEcC--CCCEEEEEEcCCeEEEE
Q 001472 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP---TALMSLCGLSSPVDSVAFDS--AEVLVLAGASTGVIKLW 85 (1072)
Q Consensus 11 L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~---~~l~sl~~hs~~ItsLafSP--dG~~LatGS~DGsI~IW 85 (1072)
-..|.+.|..+...-.| +.|||++.|++|+|+.+... +.+..+.+|.++|..++|.. -|.+|+++++||.|.||
T Consensus 7 dt~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 35799999999888888 78999999999999998543 56788999999999999976 89999999999999999
Q ss_pred EcCCCe--eEEEEeCCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCC-e--EEEEEecCCCCeEEEEEcCC---C-
Q 001472 86 DLEESK--MVRTLTGHKSNCTAVEFHPF--GEFFASGCMDTNLKIWDIRKK-G--CIHTYKGHTRGINTIRFTPD---G- 154 (1072)
Q Consensus 86 Dl~tgk--~i~tl~~h~~~VtsLafSPd--g~~LaSgs~DGsI~IWDlrtg-k--~v~~l~~h~~~VtsLafSPD---G- 154 (1072)
.-++++ .......|...|.+++|-|. |-.|++++.||.|.|++++.. . .......|.-.|++++|.|- |
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 988774 34456679999999999885 458999999999999998764 1 23445678889999999985 4
Q ss_pred ----------CEEEEEecCCeEEEEECCCCc--eEEEeeecCCceEEEEEcCCC----cEEEEEECCCeEEEEECCCC-c
Q 001472 155 ----------RWVVSGGFDNVVKVWDLTAGK--LLHDFKFHEGHIRSIDFHPLE----FLLATGSADRTVKFWDLETF-E 217 (1072)
Q Consensus 155 ----------~~LaTGS~DGsI~IWDl~tgk--~i~~~~~h~g~ItsLafSPdg----~lLaTgS~DGtIrIWDl~tg-e 217 (1072)
+.|++|+.|..|+||+...+. .-..+.+|.+.|+.++|.|.- .+|++++.||++.||....- +
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 569999999999999998763 344578999999999999963 68999999999999987631 1
Q ss_pred E--EEeeCCCCCCeEEEEEeCCCCEEEEE-ECCcEEEEEec
Q 001472 218 L--IGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWE 255 (1072)
Q Consensus 218 ~--i~~~~~h~~~VtsIafSPDG~~LasG-sdg~I~Vwd~~ 255 (1072)
. ...+......+..+.|+..|.+|+++ +++.+.+|.-+
T Consensus 246 ~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 246 PWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1 12233455679999999999999985 56678888644
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.9e-17 Score=175.27 Aligned_cols=313 Identities=28% Similarity=0.486 Sum_probs=240.3
Q ss_pred eEEEEecCCC-CeEEEEE-ecCCCcEEEEE-ECCCeEEEEECCC-CceEEEeeCCCCCeEEEEEcCCCCEEEEEEc-CCe
Q 001472 7 KLQEFVAHSA-NVNCISI-GKKACRFLITG-GDDQKVNLWAIGK-PTALMSLCGLSSPVDSVAFDSAEVLVLAGAS-TGV 81 (1072)
Q Consensus 7 ~I~~L~gHsg-~Vt~Iaf-SPdg~~lLaTG-s~DGtV~IWDl~t-~~~l~sl~~hs~~ItsLafSPdG~~LatGS~-DGs 81 (1072)
.+..+.++.. .+..+.+ ++++..+++.. ..|+.+.+|++.. ......+..|...|..++|+|++.+++.++. ++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 179 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCc
Confidence 5666666444 7888877 77774345554 4499999999987 7888889999999999999999998888885 999
Q ss_pred EEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEE-EEecCCCCeEEEEEcCCCCEEEE
Q 001472 82 IKLWDLEESKMVRTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKKGCIH-TYKGHTRGINTIRFTPDGRWVVS 159 (1072)
Q Consensus 82 I~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~-~LaSgs~DGsI~IWDlrtgk~v~-~l~~h~~~VtsLafSPDG~~LaT 159 (1072)
+.+|+...+..+..+.+|...|.+++|+|++. .+++++.|+.|.+||...+..+. .+..|.... ...|++++.++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 258 (466)
T COG2319 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLAS 258 (466)
T ss_pred eEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEE
Confidence 99999999888899999999999999999998 55555899999999998787777 677777765 4489999988999
Q ss_pred EecCCeEEEEECCCCce-EEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeC--CCCCCeEEEEEeC
Q 001472 160 GGFDNVVKVWDLTAGKL-LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR--PEVTGVHAITFHP 236 (1072)
Q Consensus 160 GS~DGsI~IWDl~tgk~-i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~--~h~~~VtsIafSP 236 (1072)
++.|+.+++||+..... +..+..|...+.++.|+|++..+++++.|+.+.+||..+........ .|...+..+.|.+
T Consensus 259 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (466)
T COG2319 259 GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSP 338 (466)
T ss_pred ecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECC
Confidence 99999999999987664 44445678899999999988888889999899999999887666655 6666799999943
Q ss_pred CCCEEEEE--ECCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEE-EEcCCeEEEEEcCCCceeeeecCCCCCCCC
Q 001472 237 DGRTLFSG--FDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGC-SFYRNSVGIWVADVSHVEPYGVGAPEPDQS 313 (1072)
Q Consensus 237 DG~~LasG--sdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAs-gs~DGsVrIWDlds~~l~~~~v~~~~~~~~ 313 (1072)
++..++.+ .++.+.+|++...................+.+ ...+.. +..++.+.+|+............. ..
T Consensus 339 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 413 (466)
T COG2319 339 DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH----TS 413 (466)
T ss_pred CCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCC----CC
Confidence 33555555 45567888887766222222221133344444 333333 678899999998766655544211 17
Q ss_pred CeeEEEECCCCC
Q 001472 314 ICTEVKFNPPGS 325 (1072)
Q Consensus 314 ~ItsVaFSPDGs 325 (1072)
.+....+++++.
T Consensus 414 ~~~~~~~~~~~~ 425 (466)
T COG2319 414 RVTSLDFSPDGK 425 (466)
T ss_pred cEEEEEECCCCc
Confidence 888899999888
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-17 Score=195.19 Aligned_cols=243 Identities=21% Similarity=0.350 Sum_probs=199.5
Q ss_pred ecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCc-eEEEeeC-CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001472 12 VAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT-ALMSLCG-LSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89 (1072)
Q Consensus 12 ~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~-~l~sl~~-hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~t 89 (1072)
.---..|.|++|+.+. +.||.+-.||.|.||++...- ....+.+ ....|.+++|++ +..|++.+.+|.|.-||+.+
T Consensus 22 d~~Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred eeeccceEEEEEeccC-CceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEeccc
Confidence 3345789999999988 679999999999999996643 3333444 457899999995 44566777899999999999
Q ss_pred CeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEecCCeEE
Q 001472 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHT--YKGHTRGINTIRFTPDGRWVVSGGFDNVVK 167 (1072)
Q Consensus 90 gk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~--l~~h~~~VtsLafSPDG~~LaTGS~DGsI~ 167 (1072)
++....+....+.|++++.+|.+..+++||.||.+++++...++.... +....+.+.++.|+|++..++.|+.||.|+
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR 179 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence 999999999999999999999999999999999888888877765433 344567899999999999999999999999
Q ss_pred EEECCCCceEEEee-----e---cCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCC
Q 001472 168 VWDLTAGKLLHDFK-----F---HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGR 239 (1072)
Q Consensus 168 IWDl~tgk~i~~~~-----~---h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~ 239 (1072)
+||..++..++... . ...-|+++.|-.+ ..|++|...|+|.+||...+..+..+..|...|.+++..+++.
T Consensus 180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d 258 (691)
T KOG2048|consen 180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNED 258 (691)
T ss_pred EEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCC
Confidence 99999998776322 1 1223677777754 4688899999999999999999999999999999999999977
Q ss_pred EEEE-EECCcEEEEEecCC
Q 001472 240 TLFS-GFDDNLKVYSWEPV 257 (1072)
Q Consensus 240 ~Las-Gsdg~I~Vwd~~s~ 257 (1072)
++++ |-|+.+..|...+.
T Consensus 259 ~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 259 RVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred eEEEccCCCceEEEEecCC
Confidence 7766 56777766666544
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=204.98 Aligned_cols=228 Identities=18% Similarity=0.294 Sum_probs=200.1
Q ss_pred cCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcC----
Q 001472 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE---- 88 (1072)
Q Consensus 13 gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~---- 88 (1072)
.-.+.|.|++-+|+| .+|+.|+..|.|++|.+.+|..+..+..|-..|+|+.|+.||.+|++|+.||.|.+|.+.
T Consensus 79 v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 79 VLPGPVHALASSNLG-YFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred ccccceeeeecCCCc-eEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc
Confidence 345789999999999 888888899999999999999999999999999999999999999999999999999873
Q ss_pred -----CCeeEEEEeCCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 001472 89 -----ESKMVRTLTGHKSNCTAVEFHPFG--EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGG 161 (1072)
Q Consensus 89 -----tgk~i~tl~~h~~~VtsLafSPdg--~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS 161 (1072)
+-++.+.+..|.-+|+++...+.| .++++++.|.++++||+..+..+..+. ....+.+++.+|-+..+++|+
T Consensus 158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt 236 (476)
T KOG0646|consen 158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGT 236 (476)
T ss_pred cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecC
Confidence 235778889999999999987653 489999999999999999999888887 556799999999999999999
Q ss_pred cCCeEEEEECCCC----------------ceEEEeeecCC--ceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeC
Q 001472 162 FDNVVKVWDLTAG----------------KLLHDFKFHEG--HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR 223 (1072)
Q Consensus 162 ~DGsI~IWDl~tg----------------k~i~~~~~h~g--~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~ 223 (1072)
.+|.|.+.++... ..+..+.+|.+ .|+|++++-||.+|++|+.||.++|||+.+.+++..+.
T Consensus 237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 9999999877432 23455667887 89999999999999999999999999999999998887
Q ss_pred CCCCCeEEEEEeCCCCEEE
Q 001472 224 PEVTGVHAITFHPDGRTLF 242 (1072)
Q Consensus 224 ~h~~~VtsIafSPDG~~La 242 (1072)
...++|+.+.+.|-.+-.+
T Consensus 317 ~~kgpVtnL~i~~~~~~~~ 335 (476)
T KOG0646|consen 317 TSKGPVTNLQINPLERGII 335 (476)
T ss_pred hhccccceeEeecccccee
Confidence 7778999999876543333
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-19 Score=191.41 Aligned_cols=283 Identities=16% Similarity=0.294 Sum_probs=215.6
Q ss_pred EecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCce----------EE-----EeeCCCCCeEEEEEcC-CCCEEE
Q 001472 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTA----------LM-----SLCGLSSPVDSVAFDS-AEVLVL 74 (1072)
Q Consensus 11 L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~----------l~-----sl~~hs~~ItsLafSP-dG~~La 74 (1072)
...|.+.|+++.+.+..++|+++|+.||.|.+||++.... .. .-.+|...|..+.|-| |.-.+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 3568999999999998889999999999999999965321 11 1136778899999999 556888
Q ss_pred EEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCC---CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEc
Q 001472 75 AGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG---EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFT 151 (1072)
Q Consensus 75 tGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg---~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafS 151 (1072)
+++.|.+++|||..+-+....++ ..+.|+.-+|+|-. -++|+|..+-.|++.|+.+|.+.+.+.+|.+.|.++.|+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 89999999999999988877776 56788888998843 367888888999999999999999999999999999999
Q ss_pred CCCCE-EEEEecCCeEEEEECCCC-ceEEE--------------eeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCC
Q 001472 152 PDGRW-VVSGGFDNVVKVWDLTAG-KLLHD--------------FKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET 215 (1072)
Q Consensus 152 PDG~~-LaTGS~DGsI~IWDl~tg-k~i~~--------------~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~t 215 (1072)
|...| |++|+.||.|++||++.. .+... -..|.+.+..++|..++.++++++.|..+++|+..+
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 97665 678999999999999753 22222 235778899999999999999999999999999988
Q ss_pred CcEEEeeCC---CC----CCeEEEEEeCCCCEEEEEECCcEEEEEecCCeeecccccCCCeee-eEEecCCCEEEEEEcC
Q 001472 216 FELIGSTRP---EV----TGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLG-DLCINDGKLLGCSFYR 287 (1072)
Q Consensus 216 ge~i~~~~~---h~----~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~~s~i~-~l~spDGk~LAsgs~D 287 (1072)
|+......+ +. ..+. +.--..+.++..-.++++.++.+-.+..+..+..+...+. .++-++=+...+|..|
T Consensus 278 G~ntl~~~g~~~~n~~~~~~~~-~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d 356 (397)
T KOG4283|consen 278 GRNTLREFGPIIHNQTTSFAVH-IQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMN 356 (397)
T ss_pred CcccccccccccccccccceEE-EeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccC
Confidence 754221110 00 1111 2211123344444567788888777777666665544333 3344677778889999
Q ss_pred CeEEEEEc
Q 001472 288 NSVGIWVA 295 (1072)
Q Consensus 288 GsVrIWDl 295 (1072)
+.|..|-.
T Consensus 357 ~ni~~w~p 364 (397)
T KOG4283|consen 357 GNIYMWSP 364 (397)
T ss_pred Cccccccc
Confidence 99999954
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=180.63 Aligned_cols=245 Identities=21% Similarity=0.403 Sum_probs=202.8
Q ss_pred EEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCc-----eEEEeeCCCCCeEEEEEcC----CCCEEEEEEc-
Q 001472 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT-----ALMSLCGLSSPVDSVAFDS----AEVLVLAGAS- 78 (1072)
Q Consensus 9 ~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~-----~l~sl~~hs~~ItsLafSP----dG~~LatGS~- 78 (1072)
+.-+.|.+.|.|.+|+|+| .+|++|+.|.+|++.-++... .-..+..|.+.|..++|-. .|..|++++.
T Consensus 83 kr~khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred eeccccCccEEEEEecCcc-CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence 4456899999999999999 899999999999997663321 2335677999999999964 3456666543
Q ss_pred CCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec--C-----CCCeEEEEEc
Q 001472 79 TGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG--H-----TRGINTIRFT 151 (1072)
Q Consensus 79 DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~--h-----~~~VtsLafS 151 (1072)
|..|++-|...|+..+.+.+|.+.|.++ ++-+|-.|++|++|.+|++||++-..++..+.. | ...|.+++..
T Consensus 162 dc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vd 240 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVD 240 (350)
T ss_pred cceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEEC
Confidence 6678888999999999999999999876 233488999999999999999998888877642 2 2468999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCC----cEEEeeCCCCC
Q 001472 152 PDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF----ELIGSTRPEVT 227 (1072)
Q Consensus 152 PDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tg----e~i~~~~~h~~ 227 (1072)
|.|++|++|-.|....+||++.+..++.|..|...|.++.|+|...++++++.|..|++-|+... -.+.....|..
T Consensus 241 psgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkd 320 (350)
T KOG0641|consen 241 PSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKD 320 (350)
T ss_pred CCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999998731 12344556777
Q ss_pred CeEEEEEeCCCCEEEE-EECCcEEEEEec
Q 001472 228 GVHAITFHPDGRTLFS-GFDDNLKVYSWE 255 (1072)
Q Consensus 228 ~VtsIafSPDG~~Las-Gsdg~I~Vwd~~ 255 (1072)
.+..+.|+|..-.+++ +.|....+|-+.
T Consensus 321 k~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 321 KAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEecCccceeeeccCcceEEEeccC
Confidence 8889999998766665 456678898764
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.2e-17 Score=175.12 Aligned_cols=307 Identities=30% Similarity=0.553 Sum_probs=238.9
Q ss_pred EEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCc-eEEEeeCCC-CCeEEEEE-cCCCC-EEEEEEc-CCeEEE
Q 001472 10 EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT-ALMSLCGLS-SPVDSVAF-DSAEV-LVLAGAS-TGVIKL 84 (1072)
Q Consensus 10 ~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~-~l~sl~~hs-~~ItsLaf-SPdG~-~LatGS~-DGsI~I 84 (1072)
.+..|...|.++.|.+.+ ..++.++.|+.+.+|+...+. ....+..+. ..+..+.+ ++++. +++..+. ++.+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECCCC-cEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 467899999999999998 778888899999999998876 666666644 36777777 78787 5555444 899999
Q ss_pred EEcCC-CeeEEEEeCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEe
Q 001472 85 WDLEE-SKMVRTLTGHKSNCTAVEFHPFGEFFASGCM-DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR-WVVSGG 161 (1072)
Q Consensus 85 WDl~t-gk~i~tl~~h~~~VtsLafSPdg~~LaSgs~-DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~-~LaTGS 161 (1072)
|++.. ......+..|...|..++|+|++.++++++. ++.+++|++..+..+..+..|...+.+++|+|++. ++++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 99988 7888888899999999999999998888875 99999999998888888988999999999999998 555558
Q ss_pred cCCeEEEEECCCCceEE-EeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcE-EEeeCCCCCCeEEEEEeCCCC
Q 001472 162 FDNVVKVWDLTAGKLLH-DFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFEL-IGSTRPEVTGVHAITFHPDGR 239 (1072)
Q Consensus 162 ~DGsI~IWDl~tgk~i~-~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~-i~~~~~h~~~VtsIafSPDG~ 239 (1072)
.|+.|.+||...+..+. .+..|.... ...|++++.++++++.|+.+++|++..... +..+..|...+.++.|.|++.
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 297 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK 297 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCC
Confidence 99999999999888877 677777765 448999998899999999999999987664 444456678899999999888
Q ss_pred EEEEEE-CCcEEEEEecCCeeecccc--cCCC-eeeeEEecCCCEEEEE-EcCCeEEEEEcCCCceeeeecCCCCCCCCC
Q 001472 240 TLFSGF-DDNLKVYSWEPVICHDSVD--MGWS-TLGDLCINDGKLLGCS-FYRNSVGIWVADVSHVEPYGVGAPEPDQSI 314 (1072)
Q Consensus 240 ~LasGs-dg~I~Vwd~~s~~~~~~l~--~~~s-~i~~l~spDGk~LAsg-s~DGsVrIWDlds~~l~~~~v~~~~~~~~~ 314 (1072)
.+++++ ++.+.+|+........... .+.. .....+.+++..++.+ ..|+.+.+|+..... ..... .....
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~----~~~~~ 372 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLKTL----EGHSN 372 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeEEe----cCCce
Confidence 888754 4458999887665444433 3332 3333332233455555 678999999987666 22221 11222
Q ss_pred eeEEEECCCC
Q 001472 315 CTEVKFNPPG 324 (1072)
Q Consensus 315 ItsVaFSPDG 324 (1072)
+..+.|++ .
T Consensus 373 ~~~~~~~~-~ 381 (466)
T COG2319 373 VLSVSFSP-D 381 (466)
T ss_pred EEEEEECC-C
Confidence 88899999 6
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.3e-19 Score=197.61 Aligned_cols=281 Identities=14% Similarity=0.235 Sum_probs=223.6
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC--CeeEEEEeCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeE
Q 001472 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE--SKMVRTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKKGC 134 (1072)
Q Consensus 58 s~~ItsLafSPdG~~LatGS~DGsI~IWDl~t--gk~i~tl~~h~~~VtsLafSPdg~-~LaSgs~DGsI~IWDlrtgk~ 134 (1072)
.+.|+++.|+|....|++++.||.++||.+.. ...++.+.-...+|.+++|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 47899999999999999999999999998864 345666666688999999999999 899999999999999988764
Q ss_pred EEE--EecC-CCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEE
Q 001472 135 IHT--YKGH-TRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFW 211 (1072)
Q Consensus 135 v~~--l~~h-~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIW 211 (1072)
... ..++ ...+.....++++++|+..+..|.|.+....+++.+..++ ..+.|..++|+.+++.|++++.+|.|++|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 332 2222 2357788999999999999999999999999999999998 57889999999999999999999999999
Q ss_pred ECCCCcEEEeeCCCCC-CeEEEEEeCCCCEEEEEECCc-EEEEEecCCe------eeccc-ccCCCeeeeEEecCCCEEE
Q 001472 212 DLETFELIGSTRPEVT-GVHAITFHPDGRTLFSGFDDN-LKVYSWEPVI------CHDSV-DMGWSTLGDLCINDGKLLG 282 (1072)
Q Consensus 212 Dl~tge~i~~~~~h~~-~VtsIafSPDG~~LasGsdg~-I~Vwd~~s~~------~~~~l-~~~~s~i~~l~spDGk~LA 282 (1072)
|++...++..+....+ .-++++.+++|.|||+|++.+ +.|||.++.. +...+ .....+....|.+|+++||
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLA 451 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILA 451 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhh
Confidence 9999988887765422 346788889999999998876 7899976422 22222 3344566677889999998
Q ss_pred EEE--cCCeEEEEEcCCCce-eeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcceEEeec
Q 001472 283 CSF--YRNSVGIWVADVSHV-EPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSP 346 (1072)
Q Consensus 283 sgs--~DGsVrIWDlds~~l-~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivp 346 (1072)
.++ .+..+++-.+....+ .-|.. ....-+.++|++|||.|+ ..+.|...|..+++-+
T Consensus 452 iaS~~~knalrLVHvPS~TVFsNfP~--~n~~vg~vtc~aFSP~sG-----~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 452 IASRVKKNALRLVHVPSCTVFSNFPT--SNTKVGHVTCMAFSPNSG-----YLAVGNEAGRVHLFKL 511 (514)
T ss_pred hhhhccccceEEEeccceeeeccCCC--CCCcccceEEEEecCCCc-----eEEeecCCCceeeEee
Confidence 877 457788887754433 22221 134568999999999999 8889999887666644
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-19 Score=201.47 Aligned_cols=240 Identities=21% Similarity=0.400 Sum_probs=203.9
Q ss_pred EEEEEE-CCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEE
Q 001472 30 FLITGG-DDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEF 108 (1072)
Q Consensus 30 lLaTGs-~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLaf 108 (1072)
|++++. ....|.+|.+.............++|.|++-+|+|.+|+.|+..|.|++|.+.+|.++..+..|...|+|+.|
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f 131 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF 131 (476)
T ss_pred heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE
Confidence 344443 3457899999777666655556788999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECC---------CCeEEEEEecCCCCeEEEEEcCCC--CEEEEEecCCeEEEEECCCCceE
Q 001472 109 HPFGEFFASGCMDTNLKIWDIR---------KKGCIHTYKGHTRGINTIRFTPDG--RWVVSGGFDNVVKVWDLTAGKLL 177 (1072)
Q Consensus 109 SPdg~~LaSgs~DGsI~IWDlr---------tgk~v~~l~~h~~~VtsLafSPDG--~~LaTGS~DGsI~IWDl~tgk~i 177 (1072)
+-||.+|++|+.||.|.+|.+- +-++++.+..|.-+|+.+...+.| .+|++++.|.++++||+..|..+
T Consensus 132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL 211 (476)
T ss_pred eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence 9999999999999999999763 335678889999999999987643 48999999999999999999998
Q ss_pred EEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCC----------------cEEEeeCCCCC--CeEEEEEeCCCC
Q 001472 178 HDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF----------------ELIGSTRPEVT--GVHAITFHPDGR 239 (1072)
Q Consensus 178 ~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tg----------------e~i~~~~~h~~--~VtsIafSPDG~ 239 (1072)
..+. ....+.+++.+|-+..+++|+.+|.|.+.++... ..+..+.+|.+ .|+|++++-||.
T Consensus 212 lti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt 290 (476)
T KOG0646|consen 212 LTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT 290 (476)
T ss_pred EEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc
Confidence 8877 5678999999999999999999999999887542 23455667776 899999999999
Q ss_pred EEEEEE-CCcEEEEEecCCeeecccccCCCee
Q 001472 240 TLFSGF-DDNLKVYSWEPVICHDSVDMGWSTL 270 (1072)
Q Consensus 240 ~LasGs-dg~I~Vwd~~s~~~~~~l~~~~s~i 270 (1072)
.|++|+ ||.+.|||..+..+++.+.....++
T Consensus 291 lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpV 322 (476)
T KOG0646|consen 291 LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPV 322 (476)
T ss_pred EEEeeCCCCCEEEEecchHHHHHHHhhhcccc
Confidence 999985 6679999999999988877333333
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-20 Score=202.22 Aligned_cols=282 Identities=19% Similarity=0.275 Sum_probs=222.7
Q ss_pred EEEeeCCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001472 51 LMSLCGLSSPVDSVAFDSAE-VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDI 129 (1072)
Q Consensus 51 l~sl~~hs~~ItsLafSPdG-~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDl 129 (1072)
+..+.+|..+|.|++=+|+. ..+++|+.||.|+|||+....++..+..|.+.|..|++.. ..++++++|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 45568999999999999977 7899999999999999999999999999999999999986 66888889999999997
Q ss_pred CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCC-cEEEEEECCCeE
Q 001472 130 RKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE-FLLATGSADRTV 208 (1072)
Q Consensus 130 rtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg-~lLaTgS~DGtI 208 (1072)
.. ..++++.+. ..+..+.-+..+..++++|+ .|.|||..-..++..+......|.++.|+|.. .+|++|+.|+.|
T Consensus 137 ~~-~p~~tilg~-s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 137 DG-PPLHTILGK-SVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred cC-Ccceeeecc-ccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 64 467777643 45677777777778888875 58999999999999999888899999999975 577777799999
Q ss_pred EEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECC-cEEEEEecCCee-eccc-ccCCCeeeeEEecCCCEEEEEE
Q 001472 209 KFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD-NLKVYSWEPVIC-HDSV-DMGWSTLGDLCINDGKLLGCSF 285 (1072)
Q Consensus 209 rIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg-~I~Vwd~~s~~~-~~~l-~~~~s~i~~l~spDGk~LAsgs 285 (1072)
.+||++.+.++...... ..-..|+|+|.+-.+++|.++ +++.||...... .... .+........++|.|+-|++|+
T Consensus 213 vLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred EEEecccCCccceeeee-ccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence 99999999887765433 345789999977666677654 477777664332 2222 3334566677889999999999
Q ss_pred cCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcceEEeecC
Q 001472 286 YRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPD 347 (1072)
Q Consensus 286 ~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD 347 (1072)
.|.+|+||.++.++-..... ..--..|.||.||-|.. .+..|...|-.+.+-..
T Consensus 292 yDksIRIf~~~~~~SRdiYh---tkRMq~V~~Vk~S~Dsk-----yi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 292 YDKSIRIFPVNHGHSRDIYH---TKRMQHVFCVKYSMDSK-----YIISGSDDGNVRLWKAK 345 (433)
T ss_pred ccceEEEeecCCCcchhhhh---HhhhheeeEEEEecccc-----EEEecCCCcceeeeecc
Confidence 99999999987665433221 23346799999999999 67777777755555433
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.3e-20 Score=215.71 Aligned_cols=278 Identities=21% Similarity=0.365 Sum_probs=214.6
Q ss_pred CCeEEEEEecCCCcEEEEEECCCeEEEEECCCCc----eEEEeeC---CCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEc
Q 001472 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT----ALMSLCG---LSSPVDSVAFDS-AEVLVLAGASTGVIKLWDL 87 (1072)
Q Consensus 16 g~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~----~l~sl~~---hs~~ItsLafSP-dG~~LatGS~DGsI~IWDl 87 (1072)
....+|...++- ..++.++. ..+.||.+.... ....... ....+..+.|+. +.++|++++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~-~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDI-NQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCc-ceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 456777788887 44555554 367788763321 1111111 112345678875 5689999999999999999
Q ss_pred CC---CeeEEEEeCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEec
Q 001472 88 EE---SKMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP-DGRWVVSGGF 162 (1072)
Q Consensus 88 ~t---gk~i~tl~~h~~~VtsLafSPdg-~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSP-DG~~LaTGS~ 162 (1072)
.. .+.+..+..|...+.+++|++.. .+|++|++||.|++||++..+....+.+....|..+.|+| .+.+|+++..
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecC
Confidence 86 56677888999999999999865 5889999999999999999998888888888999999999 6778999999
Q ss_pred CCeEEEEECCCC-ceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcE--EEeeCCCCCCeEEEEEeCCCC
Q 001472 163 DNVVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFEL--IGSTRPEVTGVHAITFHPDGR 239 (1072)
Q Consensus 163 DGsI~IWDl~tg-k~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~--i~~~~~h~~~VtsIafSPDG~ 239 (1072)
.|.+.+||++.. ++...+.+|.++|.|+.|+|++.+||+||.|+.|+|||....+. +..+. ...++.++.|-|+..
T Consensus 198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~ 276 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARS 276 (839)
T ss_pred CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCcc
Confidence 999999999876 45677889999999999999999999999999999999986543 22222 236799999999877
Q ss_pred EEEE-E---ECCcEEEEEecC-CeeecccccCCCeeeeEEecC--CCEEEEEEcCCeEEEEEcC
Q 001472 240 TLFS-G---FDDNLKVYSWEP-VICHDSVDMGWSTLGDLCIND--GKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 240 ~Las-G---sdg~I~Vwd~~s-~~~~~~l~~~~s~i~~l~spD--Gk~LAsgs~DGsVrIWDld 296 (1072)
+.++ + .+-.|+|||+.. ..+...+..+...+..++|+. ...|.+++.||.|..-.++
T Consensus 277 ~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 277 YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred chhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 6554 3 355699999974 555666777777777777754 5577788888877654433
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=204.39 Aligned_cols=281 Identities=18% Similarity=0.289 Sum_probs=221.5
Q ss_pred EEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCC--EEEEEEcCCeEEEEE
Q 001472 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEV--LVLAGASTGVIKLWD 86 (1072)
Q Consensus 9 ~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~--~LatGS~DGsI~IWD 86 (1072)
..|.||++.|.||...|.| .+|++|+.||+|+||.+.++.++..+. ..+.|.|++|+|.+. .||++ ..+.+.|.+
T Consensus 394 lvyrGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA-~~~~~~ivn 470 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA-VGECVLIVN 470 (733)
T ss_pred eeEeccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEE-ecCceEEeC
Confidence 4689999999999999988 899999999999999999999998876 467899999999765 23332 223333333
Q ss_pred cCCC-------------------------------------eeEEEEeCCCCCeEEEEEcCCCCEEEEEeCC---CeEEE
Q 001472 87 LEES-------------------------------------KMVRTLTGHKSNCTAVEFHPFGEFFASGCMD---TNLKI 126 (1072)
Q Consensus 87 l~tg-------------------------------------k~i~tl~~h~~~VtsLafSPdg~~LaSgs~D---GsI~I 126 (1072)
..-| .-++..-.|...|..+.||..|.||++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 2111 0122333578889999999999999998664 46999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCC
Q 001472 127 WDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADR 206 (1072)
Q Consensus 127 WDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DG 206 (1072)
+++.......-|....+.|.++.|+|...+|++++ ...|+|||+..+..+..+......|..++.+|.|..|++|+.|+
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 99987776666766677899999999988888877 46799999998888887777778899999999999999999999
Q ss_pred eEEEEECCCC-cEEEeeCCCCCCeEEEEEeCCCCEEEEEEC-CcEEEEEecC---------CeeecccccC-----CCee
Q 001472 207 TVKFWDLETF-ELIGSTRPEVTGVHAITFHPDGRTLFSGFD-DNLKVYSWEP---------VICHDSVDMG-----WSTL 270 (1072)
Q Consensus 207 tIrIWDl~tg-e~i~~~~~h~~~VtsIafSPDG~~LasGsd-g~I~Vwd~~s---------~~~~~~l~~~-----~s~i 270 (1072)
.+..||+.-. ++...+..|...+++++|++.-.++++|++ +.+.||.-.- ...+..+..+ ..++
T Consensus 630 k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVL 709 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVL 709 (733)
T ss_pred eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceE
Confidence 9999999854 566778888899999999999999999987 4566665221 1112222222 3345
Q ss_pred eeEEecCCCEEEEEEcCCeEEEE
Q 001472 271 GDLCINDGKLLGCSFYRNSVGIW 293 (1072)
Q Consensus 271 ~~l~spDGk~LAsgs~DGsVrIW 293 (1072)
...|.|..-+|++++.||.|++|
T Consensus 710 d~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 710 DTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccCCCceEEecCCCceEEee
Confidence 55688999999999999999999
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-18 Score=201.17 Aligned_cols=331 Identities=17% Similarity=0.253 Sum_probs=245.0
Q ss_pred EecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCc--eEEE-----eeCCCCCeEEEEEcCCCCEEEEEEcCCeEE
Q 001472 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT--ALMS-----LCGLSSPVDSVAFDSAEVLVLAGASTGVIK 83 (1072)
Q Consensus 11 L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~--~l~s-----l~~hs~~ItsLafSPdG~~LatGS~DGsI~ 83 (1072)
+.||.+.|.++.|+|.+ ..|++++.|.++.+|.-.+.. -... ..+.....+...|+|+++.+++-+..|..+
T Consensus 263 l~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hcCcccceEEEEEccch-hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 34999999999999998 778999999999999875432 2211 234456688999999999999999999999
Q ss_pred EEEcCCC---eeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEE---ecCCCCeEEEEEcCCCCE
Q 001472 84 LWDLEES---KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR-KKGCIHTY---KGHTRGINTIRFTPDGRW 156 (1072)
Q Consensus 84 IWDl~tg---k~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlr-tgk~v~~l---~~h~~~VtsLafSPDG~~ 156 (1072)
+|...+. .....+.+|.+.|.+++|+|.|.||++.+.|-+-++|--- ....-+.+ +-|...+.|++|-+....
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 9983332 2334567899999999999999999999999999998644 11122332 457778999999985567
Q ss_pred EEEEecCCeEEEEECCC-------------------------------------------Cce-----------------
Q 001472 157 VVSGGFDNVVKVWDLTA-------------------------------------------GKL----------------- 176 (1072)
Q Consensus 157 LaTGS~DGsI~IWDl~t-------------------------------------------gk~----------------- 176 (1072)
|++|.....+++|+... |..
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 88888888899986420 100
Q ss_pred ----------------EEEeeecCCceEEEEEcCCCcEEEEEECC-----CeEEEEECCCCcEEEeeCCCCCCeEEEEEe
Q 001472 177 ----------------LHDFKFHEGHIRSIDFHPLEFLLATGSAD-----RTVKFWDLETFELIGSTRPEVTGVHAITFH 235 (1072)
Q Consensus 177 ----------------i~~~~~h~g~ItsLafSPdg~lLaTgS~D-----GtIrIWDl~tge~i~~~~~h~~~VtsIafS 235 (1072)
++.+.+|...|++++.+|+++++++++.. ..|++|+..+...+..+..|.-.|+.++|+
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS 581 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS 581 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC
Confidence 11123588889999999999999999754 359999999999999999999999999999
Q ss_pred CCCCEEEEE-ECCcEEEEEecCCeee----cccccCC-CeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCC
Q 001472 236 PDGRTLFSG-FDDNLKVYSWEPVICH----DSVDMGW-STLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPE 309 (1072)
Q Consensus 236 PDG~~LasG-sdg~I~Vwd~~s~~~~----~~l~~~~-s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~ 309 (1072)
|||++|++. -|....+|........ .....+. -+..+-|+|++++|++++.|.+|.+|................
T Consensus 582 pdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~ 661 (764)
T KOG1063|consen 582 PDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACL 661 (764)
T ss_pred CCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchh
Confidence 999999985 4667889987532211 1122222 333445669999999999999999998765422222111225
Q ss_pred CCCCCeeEEEECCCCCccceEEEEEeccCcceE
Q 001472 310 PDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFR 342 (1072)
Q Consensus 310 ~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r 342 (1072)
.+...++.++|.|--..--..++++|...|-+-
T Consensus 662 ~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~ 694 (764)
T KOG1063|consen 662 KFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIV 694 (764)
T ss_pred ccCCceeeEEeeccccccccceEEEEecccEEE
Confidence 678899999998844432333566666666433
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-18 Score=184.58 Aligned_cols=267 Identities=17% Similarity=0.264 Sum_probs=206.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 001472 57 LSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH 136 (1072)
Q Consensus 57 hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~ 136 (1072)
....|..+.|+|.+..|++++.||.+++||+....+...++ |..++.+++|.+ ...+++|+.||.|+.+|+.++...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~- 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED- 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-
Confidence 35779999999999999999999999999998886666665 899999999996 557899999999999999888754
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCC
Q 001472 137 TYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF 216 (1072)
Q Consensus 137 ~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tg 216 (1072)
.+..|..++.|+.+++....+++|+.|+.|++||.+.......+. ....|.++... |+.|++|+.|..+.+||+++.
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccc
Confidence 455599999999999988889999999999999999755555555 34478888765 788999999999999999987
Q ss_pred cEEEeeC--CCCCCeEEEEEeCCCCEEEE-EECCcEEEEEecCC----------eeecccccC----CCeeeeEEecCCC
Q 001472 217 ELIGSTR--PEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWEPV----------ICHDSVDMG----WSTLGDLCINDGK 279 (1072)
Q Consensus 217 e~i~~~~--~h~~~VtsIafSPDG~~Las-Gsdg~I~Vwd~~s~----------~~~~~l~~~----~s~i~~l~spDGk 279 (1072)
....... ...-.++++++-|++.-.++ +-+|.+.+=.++.. +||.....+ +.+....++|--+
T Consensus 166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence 6544322 23346899999997665555 45777766666543 344443332 2334455667778
Q ss_pred EEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccC
Q 001472 280 LLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRST 338 (1072)
Q Consensus 280 ~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~st 338 (1072)
.||+|+.||.|.+||+...+.-... ......|.+++|+-||. .++++.+.
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl~q~----~~~~~SI~slsfs~dG~-----~LAia~sy 295 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRLKQL----AKYETSISSLSFSMDGS-----LLAIASSY 295 (323)
T ss_pred eEEecCCCceEEEccCcchhhhhhc----cCCCCceEEEEeccCCC-----eEEEEech
Confidence 8999999999999998654322211 23367799999999999 77777665
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-20 Score=215.78 Aligned_cols=219 Identities=23% Similarity=0.510 Sum_probs=185.3
Q ss_pred CeEEEEEecCCCcEEEEEECCCeEEEEECCC---CceEEEeeCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEcCCCee
Q 001472 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGK---PTALMSLCGLSSPVDSVAFDS-AEVLVLAGASTGVIKLWDLEESKM 92 (1072)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t---~~~l~sl~~hs~~ItsLafSP-dG~~LatGS~DGsI~IWDl~tgk~ 92 (1072)
.+..++|+....++||+++..|.|.+||+.. .+.+..+..|...+.++.|++ ...+|++|+.||.|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 3455678766668999999999999999977 566778899999999999998 557899999999999999999988
Q ss_pred EEEEeCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEE
Q 001472 93 VRTLTGHKSNCTAVEFHP-FGEFFASGCMDTNLKIWDIRKK-GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWD 170 (1072)
Q Consensus 93 i~tl~~h~~~VtsLafSP-dg~~LaSgs~DGsI~IWDlrtg-k~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWD 170 (1072)
..++.+..+.|.++.|+| .+.+|+++...|.+.+||++.. ++...+.+|.++|.|+.|+|++.|||+||.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 888888889999999999 5678999999999999999865 46677889999999999999999999999999999999
Q ss_pred CCCCce--EEEeeecCCceEEEEEcCCC-cEEEEEE--CCCeEEEEECCC-CcEEEeeCCCCCCeEEEEEeC
Q 001472 171 LTAGKL--LHDFKFHEGHIRSIDFHPLE-FLLATGS--ADRTVKFWDLET-FELIGSTRPEVTGVHAITFHP 236 (1072)
Q Consensus 171 l~tgk~--i~~~~~h~g~ItsLafSPdg-~lLaTgS--~DGtIrIWDl~t-ge~i~~~~~h~~~VtsIafSP 236 (1072)
+.+++. +..+. ...++.++.|-|.. ..|++++ .|-.|+|||++. .-+...+..|...++.++|..
T Consensus 249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence 986643 33333 35679999999975 4566654 477899999985 345667788888899999976
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-18 Score=185.97 Aligned_cols=270 Identities=17% Similarity=0.231 Sum_probs=206.3
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeE--EEE--eCCCCCeEEEEEcCCCCEEEEEeC-CCeEEE
Q 001472 52 MSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMV--RTL--TGHKSNCTAVEFHPFGEFFASGCM-DTNLKI 126 (1072)
Q Consensus 52 ~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i--~tl--~~h~~~VtsLafSPdg~~LaSgs~-DGsI~I 126 (1072)
..+++|...|++++|+.||++|++++.|+.|++|++++.... +.+ +-..+.-+.+.|.||.+-+++... ...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 346899999999999999999999999999999999864321 111 112235678999999886666554 456999
Q ss_pred EECCCCe---EEE---------EEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcC
Q 001472 127 WDIRKKG---CIH---------TYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHP 194 (1072)
Q Consensus 127 WDlrtgk---~v~---------~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSP 194 (1072)
|.+...+ ..+ .-+.|.-.+..+-.-.++.+|++++.|..|.+|+++ |+.+..+......-+..+.+|
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence 9764322 111 112345566677777788999999999999999998 999999888777788899999
Q ss_pred CCcEEEEEECCCeEEEEECCC---C-----cEEEeeCCCCCCeEEEEEeCCCCEEEEE-ECCcEEEEEecCCee------
Q 001472 195 LEFLLATGSADRTVKFWDLET---F-----ELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVIC------ 259 (1072)
Q Consensus 195 dg~lLaTgS~DGtIrIWDl~t---g-----e~i~~~~~h~~~VtsIafSPDG~~LasG-sdg~I~Vwd~~s~~~------ 259 (1072)
+|++|++++..-.|++|.+-- | ..+..+.+|...|..++|+++...+++. -||.++|||.+-...
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk 318 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK 318 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch
Confidence 999999999888999998642 2 2356788999999999999999998885 577899999864221
Q ss_pred -e-----cccccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCc
Q 001472 260 -H-----DSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSH 326 (1072)
Q Consensus 260 -~-----~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~ 326 (1072)
+ .....+..++....+|.|+.||.+ ....+++|..+.+...+..- ..|...|.+++|+|||++
T Consensus 319 ~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e---~~h~~~Is~is~~~~g~~ 387 (420)
T KOG2096|consen 319 ILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELE---DIHSTTISSISYSSDGKY 387 (420)
T ss_pred HhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHH---HhhcCceeeEEecCCCcE
Confidence 1 112334566778888999999987 56679999876655444332 678999999999999994
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.5e-19 Score=193.22 Aligned_cols=242 Identities=24% Similarity=0.468 Sum_probs=187.3
Q ss_pred EecCCCCeEEEEEecCC-CcEEEEEECCCeEEEEECC----------------CCceEEEeeCCCCCeEEEEEcCC-CCE
Q 001472 11 FVAHSANVNCISIGKKA-CRFLITGGDDQKVNLWAIG----------------KPTALMSLCGLSSPVDSVAFDSA-EVL 72 (1072)
Q Consensus 11 L~gHsg~Vt~IafSPdg-~~lLaTGs~DGtV~IWDl~----------------t~~~l~sl~~hs~~ItsLafSPd-G~~ 72 (1072)
...|.+.|+-+...+-+ ..++++-+..|.|+||++. ....+.++.+|...-++++|||- ...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 45688888888877764 3567777889999999982 23567788899999999999993 234
Q ss_pred EEEEEcCCeEEEEEcCCCeeE---EEEeCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCC---eEEEEEecCCCCe
Q 001472 73 VLAGASTGVIKLWDLEESKMV---RTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKK---GCIHTYKGHTRGI 145 (1072)
Q Consensus 73 LatGS~DGsI~IWDl~tgk~i---~tl~~h~~~VtsLafSPdg~-~LaSgs~DGsI~IWDlrtg---k~v~~l~~h~~~V 145 (1072)
|++|..-+.|++|...+|.-. ..+.+|...|-.++|+|..+ .|++|+-||+|+|||++.+ .++.. +.|.+.|
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDV 305 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDV 305 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCce
Confidence 778877789999998876532 34567999999999999654 8899999999999999988 33443 7899999
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCC---CceEEEeeecCCceEEEEEcCC-CcEEEEEECCCeEEEEECCCCcE---
Q 001472 146 NTIRFTPDGRWVVSGGFDNVVKVWDLTA---GKLLHDFKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFEL--- 218 (1072)
Q Consensus 146 tsLafSPDG~~LaTGS~DGsI~IWDl~t---gk~i~~~~~h~g~ItsLafSPd-g~lLaTgS~DGtIrIWDl~tge~--- 218 (1072)
+.|.|+....+|++|+.||.++|||+++ ++++..|+.|..+|+++.|+|. ...|++++.|..|.+||+..-.-
T Consensus 306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee 385 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE 385 (440)
T ss_pred eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence 9999999888999999999999999976 5678999999999999999995 56788889999999999863111
Q ss_pred --------EE-----eeCCC--CCCeEEEEEeCCC-CEEEEEECCcEEEEE
Q 001472 219 --------IG-----STRPE--VTGVHAITFHPDG-RTLFSGFDDNLKVYS 253 (1072)
Q Consensus 219 --------i~-----~~~~h--~~~VtsIafSPDG-~~LasGsdg~I~Vwd 253 (1072)
+. .+..| ...+..+.|+++- -+|++.+-+++.||.
T Consensus 386 ~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 386 IDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred hccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 00 01111 2346677888763 344455555666664
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-19 Score=202.21 Aligned_cols=236 Identities=19% Similarity=0.384 Sum_probs=204.6
Q ss_pred CCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceE--EEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCee
Q 001472 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTAL--MSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM 92 (1072)
Q Consensus 15 sg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l--~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~ 92 (1072)
...|.++.+.||| +.|++|+.-.++.|||+...... ..+....-.+++++.+||.+.+++++.||.|.|||+.+..+
T Consensus 465 dnyiRSckL~pdg-rtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 465 DNYIRSCKLLPDG-RTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred ccceeeeEecCCC-ceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence 4678899999999 78899999999999999665433 33444445678899999999999999999999999999999
Q ss_pred EEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECC
Q 001472 93 VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172 (1072)
Q Consensus 93 i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~ 172 (1072)
++.|++|.+.+.||.+++||..|.+|+-|.+|+-||++.+..+.... ....|.++.++|++.||++|-.++.+.+....
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC
Confidence 99999999999999999999999999999999999999988776655 45679999999999999999999999888865
Q ss_pred CCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECC-cEEE
Q 001472 173 AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD-NLKV 251 (1072)
Q Consensus 173 tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg-~I~V 251 (1072)
+...+.+..|...|.++.|.+.|+++++.+.|..+..|...-|..+..... ...|.++.++.|.+|+++|+.+ ...|
T Consensus 623 -kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 623 -KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred -CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEE
Confidence 444556667999999999999999999999999999999998888776644 4679999999999999999765 5667
Q ss_pred EEe
Q 001472 252 YSW 254 (1072)
Q Consensus 252 wd~ 254 (1072)
|.+
T Consensus 701 YeV 703 (705)
T KOG0639|consen 701 YEV 703 (705)
T ss_pred EEE
Confidence 754
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-18 Score=193.56 Aligned_cols=288 Identities=16% Similarity=0.230 Sum_probs=217.2
Q ss_pred EEEEecCCCCeEEEEEecCCC-cEEEEEECCCeEEEEECCC----CceEEEeeCCCCCeEEEEEcC-CCCEEEEEEcCCe
Q 001472 8 LQEFVAHSANVNCISIGKKAC-RFLITGGDDQKVNLWAIGK----PTALMSLCGLSSPVDSVAFDS-AEVLVLAGASTGV 81 (1072)
Q Consensus 8 I~~L~gHsg~Vt~IafSPdg~-~lLaTGs~DGtV~IWDl~t----~~~l~sl~~hs~~ItsLafSP-dG~~LatGS~DGs 81 (1072)
...+..|.+.|+|++|+|... +++|+|..-|.|-+||+.+ ...+..+..|..+|.++.|+| +...+++.++||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 345778999999999999886 7899999999999999942 233556678999999999999 5578999999999
Q ss_pred EEEEEcCCCee--EEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE-EEEEecCCCCeEEEEEcCCC-CEE
Q 001472 82 IKLWDLEESKM--VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC-IHTYKGHTRGINTIRFTPDG-RWV 157 (1072)
Q Consensus 82 I~IWDl~tgk~--i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~-v~~l~~h~~~VtsLafSPDG-~~L 157 (1072)
|++-|++.+.. +..+......+..+.|+.+...+++++.=|.+.+||++.++. ...+..|...|.+++++|.. .+|
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence 99999987643 333333556678888988888888888888999999998764 55666788899999999954 478
Q ss_pred EEEecCCeEEEEECCCCce----EEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECC----CCcEEEeeCCCC---
Q 001472 158 VSGGFDNVVKVWDLTAGKL----LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLE----TFELIGSTRPEV--- 226 (1072)
Q Consensus 158 aTGS~DGsI~IWDl~tgk~----i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~----tge~i~~~~~h~--- 226 (1072)
++++.|++.+|||++.-.. +...-.|...|.+..|+|.+-.|++.+.|..|+|||.. ...+...+....
T Consensus 339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~ 418 (498)
T KOG4328|consen 339 ATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTG 418 (498)
T ss_pred eecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCccc
Confidence 9999999999999986422 22233588899999999988779999999999999984 223322222111
Q ss_pred --CCeEEEEEeCCCCEEEEEE-CCcEEEEEecCCeeecccccCCC---eeeeEEecCCC-EEEEEEcCCeEEEEEc
Q 001472 227 --TGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWS---TLGDLCINDGK-LLGCSFYRNSVGIWVA 295 (1072)
Q Consensus 227 --~~VtsIafSPDG~~LasGs-dg~I~Vwd~~s~~~~~~l~~~~s---~i~~l~spDGk-~LAsgs~DGsVrIWDl 295 (1072)
-......|.|+..++++|. -..|-||+-..+..+..+..... .....|.|-+. +++.++..|.|.||--
T Consensus 419 RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 419 RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred ccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 1245678999999999984 45589999888775544332222 22234556666 5555667788998854
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.6e-19 Score=196.88 Aligned_cols=205 Identities=25% Similarity=0.498 Sum_probs=176.3
Q ss_pred EEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCC-------ceEEEeeCCCCCeEEEEEcC-CCCEEEEEEcCCe
Q 001472 10 EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP-------TALMSLCGLSSPVDSVAFDS-AEVLVLAGASTGV 81 (1072)
Q Consensus 10 ~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~-------~~l~sl~~hs~~ItsLafSP-dG~~LatGS~DGs 81 (1072)
.|.||.+.=.+++|++.....|++|+.|+.|++||+... .....+.+|...|..++|++ +...|++++.|+.
T Consensus 172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~ 251 (422)
T KOG0264|consen 172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK 251 (422)
T ss_pred EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence 688999988889999998889999999999999999543 23556789999999999998 5678889999999
Q ss_pred EEEEEcC--CCeeEEEEeCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCC-eEEEEEecCCCCeEEEEEcCCC-CE
Q 001472 82 IKLWDLE--ESKMVRTLTGHKSNCTAVEFHPF-GEFFASGCMDTNLKIWDIRKK-GCIHTYKGHTRGINTIRFTPDG-RW 156 (1072)
Q Consensus 82 I~IWDl~--tgk~i~tl~~h~~~VtsLafSPd-g~~LaSgs~DGsI~IWDlrtg-k~v~~l~~h~~~VtsLafSPDG-~~ 156 (1072)
+.|||++ +.+.......|.+.|.|++|+|. +..||+|+.|++|.+||+++. .+++.+.+|...|.++.|+|.. ..
T Consensus 252 L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etv 331 (422)
T KOG0264|consen 252 LMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETV 331 (422)
T ss_pred EEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCce
Confidence 9999999 56667778899999999999995 457888999999999999975 4688999999999999999954 57
Q ss_pred EEEEecCCeEEEEECCCC--------------ceEEEeeecCCceEEEEEcCCCc-EEEEEECCCeEEEEECC
Q 001472 157 VVSGGFDNVVKVWDLTAG--------------KLLHDFKFHEGHIRSIDFHPLEF-LLATGSADRTVKFWDLE 214 (1072)
Q Consensus 157 LaTGS~DGsI~IWDl~tg--------------k~i~~~~~h~g~ItsLafSPdg~-lLaTgS~DGtIrIWDl~ 214 (1072)
|++++.|+.+.+||+..- ++++...+|...|..+.|+|+.. .|++...|+.+.||...
T Consensus 332 LASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 332 LASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 889999999999999642 23566668999999999999875 56677889999999976
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.1e-18 Score=181.52 Aligned_cols=241 Identities=20% Similarity=0.295 Sum_probs=191.7
Q ss_pred ecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCC----CceEEEeeCCCCCeEEEEEcC--CCCEEEEEEcCCeEEEE
Q 001472 12 VAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGK----PTALMSLCGLSSPVDSVAFDS--AEVLVLAGASTGVIKLW 85 (1072)
Q Consensus 12 ~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t----~~~l~sl~~hs~~ItsLafSP--dG~~LatGS~DGsI~IW 85 (1072)
.+|.+-|+|+.|.+.| +.+|+|+.|++|+|||..+ .......+.|.+.|..+.|.+ -|+.+++++.|+++.||
T Consensus 10 s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 4799999999999999 8899999999999999743 345566789999999999975 68999999999999999
Q ss_pred EcCC---------CeeEEEEeCCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCC------eEEEEEe-------cC
Q 001472 86 DLEE---------SKMVRTLTGHKSNCTAVEFHPF--GEFFASGCMDTNLKIWDIRKK------GCIHTYK-------GH 141 (1072)
Q Consensus 86 Dl~t---------gk~i~tl~~h~~~VtsLafSPd--g~~LaSgs~DGsI~IWDlrtg------k~v~~l~-------~h 141 (1072)
.-.. .....++......|++++|.|. |-.|++++.||.|+||+.-.- ...+.+. .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 7521 1234566677889999999984 668999999999999986432 2333333 35
Q ss_pred CCCeEEEEEcCC---CCEEEEEecC-----CeEEEEECCCC----ceEEEeeecCCceEEEEEcCC----CcEEEEEECC
Q 001472 142 TRGINTIRFTPD---GRWVVSGGFD-----NVVKVWDLTAG----KLLHDFKFHEGHIRSIDFHPL----EFLLATGSAD 205 (1072)
Q Consensus 142 ~~~VtsLafSPD---G~~LaTGS~D-----GsI~IWDl~tg----k~i~~~~~h~g~ItsLafSPd----g~lLaTgS~D 205 (1072)
..+..|+.|+|. ..+|++|+.+ +.++||....+ ..+.++.+|..+|+.|+|.|+ ..+||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 566789999973 4578888765 47888876543 245566789999999999996 3689999999
Q ss_pred CeEEEEECCC--------------------CcEEEeeCCCCCCeEEEEEeCCCCEEEE-EECCcEEEEEe
Q 001472 206 RTVKFWDLET--------------------FELIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSW 254 (1072)
Q Consensus 206 GtIrIWDl~t--------------------ge~i~~~~~h~~~VtsIafSPDG~~Las-Gsdg~I~Vwd~ 254 (1072)
| |+||.+.. -+.+..+..|.+.|..+.|.-.|..|++ |.||.+++|..
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 9 99999873 1245667889999999999999999998 56667999864
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-18 Score=192.15 Aligned_cols=282 Identities=17% Similarity=0.270 Sum_probs=216.4
Q ss_pred CeEEEEECCCCceEEEeeCCC--CCeEEEEEcCCCCEEEEE--EcCCeEEEEEcCCC--eeEEEEeCCCCCeEEEEEcCC
Q 001472 38 QKVNLWAIGKPTALMSLCGLS--SPVDSVAFDSAEVLVLAG--ASTGVIKLWDLEES--KMVRTLTGHKSNCTAVEFHPF 111 (1072)
Q Consensus 38 GtV~IWDl~t~~~l~sl~~hs--~~ItsLafSPdG~~LatG--S~DGsI~IWDl~tg--k~i~tl~~h~~~VtsLafSPd 111 (1072)
..++|||+........+..|+ ..+.++.|+.... |+++ +.|..|.+|.-... +....-+...+.-.|++....
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~ 90 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ 90 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhc
Confidence 479999996655444443333 3478888877554 4444 44678888864322 222211222224455555555
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCC-ceEEE
Q 001472 112 GEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG-HIRSI 190 (1072)
Q Consensus 112 g~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g-~ItsL 190 (1072)
..|+++|+..+.|.|||++...+.+.++.|...|+++.+.....||++++..|.|.|..+.++.....|....+ .+.-+
T Consensus 91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll 170 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLL 170 (673)
T ss_pred ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEe
Confidence 68999999999999999998878888999999999999999999999999999999999999988888875534 45688
Q ss_pred EEcCCC-cEEEEEECCCeEEEEECCCCcEEEe-eCCCCCCeEEEEEeCCCCEEEE--EECCcEEEEEecCCeeecccccC
Q 001472 191 DFHPLE-FLLATGSADRTVKFWDLETFELIGS-TRPEVTGVHAITFHPDGRTLFS--GFDDNLKVYSWEPVICHDSVDMG 266 (1072)
Q Consensus 191 afSPdg-~lLaTgS~DGtIrIWDl~tge~i~~-~~~h~~~VtsIafSPDG~~Las--Gsdg~I~Vwd~~s~~~~~~l~~~ 266 (1072)
.|+|.. .+|.+++.+|.|.+||+....++.. ...|..+...|+|+|....|++ |.|..|.+||.........+...
T Consensus 171 ~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~ 250 (673)
T KOG4378|consen 171 RYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS 250 (673)
T ss_pred ecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec
Confidence 999965 5677889999999999997776654 4568889999999998766654 78889999999988777777777
Q ss_pred CCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCC
Q 001472 267 WSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPP 323 (1072)
Q Consensus 267 ~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPD 323 (1072)
.......+.++|.+|+.|...|.|..||+.... .|..+. ..|...|++++|-|.
T Consensus 251 ~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k-~Pv~v~--sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 251 HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK-APVAVR--SAHDASVTRVAFQPS 304 (673)
T ss_pred CCcceeeecCCceEEEeecCCceEEEEecccCC-CCceEe--eecccceeEEEeeec
Confidence 677778888999999999999999999997443 333332 467788999999884
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-17 Score=190.70 Aligned_cols=367 Identities=13% Similarity=0.204 Sum_probs=259.1
Q ss_pred CceEEEEecCCCCeEEEEEecCCC--cEEEEEECCCeEEEEECCCCc---------------------eE----------
Q 001472 5 GYKLQEFVAHSANVNCISIGKKAC--RFLITGGDDQKVNLWAIGKPT---------------------AL---------- 51 (1072)
Q Consensus 5 Gk~I~~L~gHsg~Vt~IafSPdg~--~lLaTGs~DGtV~IWDl~t~~---------------------~l---------- 51 (1072)
-..+.++.||.+.|.+|+|...+. .+|++++.|..|+||.+.-+. ..
T Consensus 181 f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e 260 (764)
T KOG1063|consen 181 FARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFE 260 (764)
T ss_pred eeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehh
Confidence 356789999999999999987653 588999999999999772111 11
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCee-------EEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 001472 52 MSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM-------VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124 (1072)
Q Consensus 52 ~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~-------i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI 124 (1072)
..+.+|...|+++.|+|.+..|++++.|.++.+|...+..- +..+.+........-|+|+++.+++-+..|..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 11248999999999999999999999999999998765421 12223345568899999999999999999999
Q ss_pred EEEECCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCC----ceEEEeeecCCceEEEEEcCCCc
Q 001472 125 KIWDIRKK---GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAG----KLLHDFKFHEGHIRSIDFHPLEF 197 (1072)
Q Consensus 125 ~IWDlrtg---k~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tg----k~i~~~~~h~g~ItsLafSPdg~ 197 (1072)
++|..+.. .....+.+|.+.|..+.|+|.|.+|++.+.|.+-++|-.-.. ..+..-+.|...+.|++|-+...
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 99983332 234446789999999999999999999999999999864311 12222345778899999987656
Q ss_pred EEEEEECCCeEEEEECCC-------------------------------------------Cc-----------------
Q 001472 198 LLATGSADRTVKFWDLET-------------------------------------------FE----------------- 217 (1072)
Q Consensus 198 lLaTgS~DGtIrIWDl~t-------------------------------------------ge----------------- 217 (1072)
.+++|....-+++|+... |.
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 677776667778886420 00
Q ss_pred ----------------EEEeeCCCCCCeEEEEEeCCCCEEEEEECC------cEEEEEecCCeeecccc-cCCCeeeeEE
Q 001472 218 ----------------LIGSTRPEVTGVHAITFHPDGRTLFSGFDD------NLKVYSWEPVICHDSVD-MGWSTLGDLC 274 (1072)
Q Consensus 218 ----------------~i~~~~~h~~~VtsIafSPDG~~LasGsdg------~I~Vwd~~s~~~~~~l~-~~~s~i~~l~ 274 (1072)
.+.++.+|...|.+++.+|+|++++++... .|.+|..........+. +...+....|
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~F 580 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAF 580 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEE
Confidence 011234455569999999999999986432 37788776655555443 3445667788
Q ss_pred ecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccC-cceEEeecCCcccce
Q 001472 275 INDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRST-SGFRSTSPDYETKDI 353 (1072)
Q Consensus 275 spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~st-G~~r~ivpD~et~eI 353 (1072)
+|||+||++.+.|.++.+|.........+.......|..-|....|+||+.. .+.+..+ -...|-+++.....|
T Consensus 581 Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~-----FaTaSRDK~VkVW~~~~~~d~~i 655 (764)
T KOG1063|consen 581 SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY-----FATASRDKKVKVWEEPDLRDKYI 655 (764)
T ss_pred CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccce-----eEEecCCceEEEEeccCchhhhh
Confidence 9999999999999999999874333322222233788889999999999993 3333333 223444444211222
Q ss_pred EEEeecCCCCccceeeeecCCCCC
Q 001472 354 KTIYVDSTGGKPVASQKIGPLNSP 377 (1072)
Q Consensus 354 ~~i~iDs~gGepv~~~~~sP~~s~ 377 (1072)
..+ .-..-+.++..+.+-|+.-.
T Consensus 656 ~~~-a~~~~~~aVTAv~~~~~~~~ 678 (764)
T KOG1063|consen 656 SRF-ACLKFSLAVTAVAYLPVDHN 678 (764)
T ss_pred hhh-chhccCCceeeEEeeccccc
Confidence 221 11225677777777777444
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.8e-18 Score=178.96 Aligned_cols=258 Identities=18% Similarity=0.275 Sum_probs=205.1
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC---eeEEEEeCCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEC
Q 001472 55 CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES---KMVRTLTGHKSNCTAVEFHP--FGEFFASGCMDTNLKIWDI 129 (1072)
Q Consensus 55 ~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tg---k~i~tl~~h~~~VtsLafSP--dg~~LaSgs~DGsI~IWDl 129 (1072)
..|...|..+...--|+.|++++.|+.|+|+.++.+ +++.++.+|.++|..++|.. .|.+||+++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 457777888777778999999999999999999754 56788999999999999965 7999999999999999998
Q ss_pred CCCe--EEEEEecCCCCeEEEEEcCC--CCEEEEEecCCeEEEEECCCC---ceEEEeeecCCceEEEEEcCC---C---
Q 001472 130 RKKG--CIHTYKGHTRGINTIRFTPD--GRWVVSGGFDNVVKVWDLTAG---KLLHDFKFHEGHIRSIDFHPL---E--- 196 (1072)
Q Consensus 130 rtgk--~v~~l~~h~~~VtsLafSPD--G~~LaTGS~DGsI~IWDl~tg---k~i~~~~~h~g~ItsLafSPd---g--- 196 (1072)
.++. ....+..|...|++++|-|. |-.|++++.||.|.|++.+.. .......+|.-.|++++|.|- |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 7764 34556678999999999984 568999999999999988754 223445678999999999985 4
Q ss_pred --------cEEEEEECCCeEEEEECCCCc--EEEeeCCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCCeeecccccC
Q 001472 197 --------FLLATGSADRTVKFWDLETFE--LIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMG 266 (1072)
Q Consensus 197 --------~lLaTgS~DGtIrIWDl~tge--~i~~~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~ 266 (1072)
+.|++|+.|..|+||+..++. .-..+..|...|+.++|.|.-.+
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl-------------------------- 221 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL-------------------------- 221 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC--------------------------
Confidence 569999999999999998753 33457889999999999985211
Q ss_pred CCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcceEEeec
Q 001472 267 WSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSP 346 (1072)
Q Consensus 267 ~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivp 346 (1072)
...+||+++.||+|.||..+ ....++...+.......+..+.||+.|+ +++++..+--+.++.+
T Consensus 222 ----------~~s~iAS~SqDg~viIwt~~-~e~e~wk~tll~~f~~~~w~vSWS~sGn-----~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 222 ----------PKSTIASCSQDGTVIIWTKD-EEYEPWKKTLLEEFPDVVWRVSWSLSGN-----ILAVSGGDNKVTLWKE 285 (299)
T ss_pred ----------CceeeEEecCCCcEEEEEec-CccCcccccccccCCcceEEEEEecccc-----EEEEecCCcEEEEEEe
Confidence 01248899999999999887 5556666555566788899999999999 6777666655556666
Q ss_pred CCcccceEE
Q 001472 347 DYETKDIKT 355 (1072)
Q Consensus 347 D~et~eI~~ 355 (1072)
+ -.|+...
T Consensus 286 ~-~~Gkw~~ 293 (299)
T KOG1332|consen 286 N-VDGKWEE 293 (299)
T ss_pred C-CCCcEEE
Confidence 5 3444333
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-17 Score=176.38 Aligned_cols=264 Identities=20% Similarity=0.306 Sum_probs=194.6
Q ss_pred eCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEcCCCe------e----EE-----EEeCCCCCeEEEEEcC-CCCEEEE
Q 001472 55 CGLSSPVDSVAFDS-AEVLVLAGASTGVIKLWDLEESK------M----VR-----TLTGHKSNCTAVEFHP-FGEFFAS 117 (1072)
Q Consensus 55 ~~hs~~ItsLafSP-dG~~LatGS~DGsI~IWDl~tgk------~----i~-----tl~~h~~~VtsLafSP-dg~~LaS 117 (1072)
..|.+.|.++...+ .|+|+++|+.||.|.+||++... . +. .-.+|...|..+.|-| |...|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45789999999987 78999999999999999997542 1 11 1135778899999999 5568889
Q ss_pred EeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC---CCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcC
Q 001472 118 GCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP---DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHP 194 (1072)
Q Consensus 118 gs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSP---DG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSP 194 (1072)
++.|.++++||..+.+....|+ ..+.|++-+|+| ...++++|..+-.|++.|+.+|...+.+.+|.+.|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999988887777 456788889988 345788888899999999999999999999999999999999
Q ss_pred CC-cEEEEEECCCeEEEEECCCC-cEEEe--------------eCCCCCCeEEEEEeCCCCEEEE-EECCcEEEEEecCC
Q 001472 195 LE-FLLATGSADRTVKFWDLETF-ELIGS--------------TRPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWEPV 257 (1072)
Q Consensus 195 dg-~lLaTgS~DGtIrIWDl~tg-e~i~~--------------~~~h~~~VtsIafSPDG~~Las-Gsdg~I~Vwd~~s~ 257 (1072)
.. -.|++|+.||.|++||++.. .+... -..|.+.+..++|+.+|.++++ |.++.+++|....+
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 65 56789999999999999853 22222 2346677999999999999987 67889999998765
Q ss_pred eeecc-----c---ccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCC
Q 001472 258 ICHDS-----V---DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 258 ~~~~~-----l---~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs 325 (1072)
..... . ..+.... .. +-+...++.--.++.+.++.+-.+...... ..|...+.|..|-|+-.
T Consensus 279 ~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l----~~h~k~i~c~~~~~~fq 348 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL----STHLKRINCAAYRPDFE 348 (397)
T ss_pred cccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEee----ecccceeeEEeecCchh
Confidence 42110 0 1111111 11 122223333334566677665444433332 35566777778877665
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-17 Score=176.94 Aligned_cols=260 Identities=17% Similarity=0.219 Sum_probs=197.7
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec
Q 001472 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG 140 (1072)
Q Consensus 61 ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~ 140 (1072)
..|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|-.+|++++|+++|++|++++.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 6899999999999999999999999999998888899999999999999999999999999999999999999999887
Q ss_pred CCCCeEEEEEcCCCC-EEEEEecCCeEEEEECCCCceEEEeeecC----CceEEEEEcCCCcEEEEEECCCeEEEEECCC
Q 001472 141 HTRGINTIRFTPDGR-WVVSGGFDNVVKVWDLTAGKLLHDFKFHE----GHIRSIDFHPLEFLLATGSADRTVKFWDLET 215 (1072)
Q Consensus 141 h~~~VtsLafSPDG~-~LaTGS~DGsI~IWDl~tgk~i~~~~~h~----g~ItsLafSPdg~lLaTgS~DGtIrIWDl~t 215 (1072)
...+|+.+.|+|... .+++.-.+..-.+.++..++....-.... ..-.+..|.+.|+++++|...|.+.+||..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 678999999999443 23332233334455554432211111111 1123346889999999999999999999999
Q ss_pred CcEEEeeCCCC-CCeEEEEEeCCCCEEEE-EECCcEEEEEecCCee----------ecccc--cCCCeeeeEEecCCCEE
Q 001472 216 FELIGSTRPEV-TGVHAITFHPDGRTLFS-GFDDNLKVYSWEPVIC----------HDSVD--MGWSTLGDLCINDGKLL 281 (1072)
Q Consensus 216 ge~i~~~~~h~-~~VtsIafSPDG~~Las-Gsdg~I~Vwd~~s~~~----------~~~l~--~~~s~i~~l~spDGk~L 281 (1072)
.+++..++... ..|.++.|+..|++|+. ++|..|+.|++..... ++..+ ....--.+.++.+|.|+
T Consensus 185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv 264 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYV 264 (405)
T ss_pred heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEE
Confidence 99998887666 77999999999999998 4677799999863111 11111 11122345566799998
Q ss_pred EEEEc-CCeEEEEEcCCCceeeeecCCCCCCC-CCeeEEEECCCCC
Q 001472 282 GCSFY-RNSVGIWVADVSHVEPYGVGAPEPDQ-SICTEVKFNPPGS 325 (1072)
Q Consensus 282 Asgs~-DGsVrIWDlds~~l~~~~v~~~~~~~-~~ItsVaFSPDGs 325 (1072)
+.++. ...++||.-..+.+..... +.+ .....+.|+|-..
T Consensus 265 ~a~s~~aHaLYIWE~~~GsLVKILh----G~kgE~l~DV~whp~rp 306 (405)
T KOG1273|consen 265 CAGSARAHALYIWEKSIGSLVKILH----GTKGEELLDVNWHPVRP 306 (405)
T ss_pred EeccccceeEEEEecCCcceeeeec----CCchhheeeccccccee
Confidence 87763 4679999888887776653 333 6778899999555
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=187.27 Aligned_cols=287 Identities=21% Similarity=0.309 Sum_probs=213.2
Q ss_pred CCCceEEEeeCCCCCeEEEEEcCCC--CEEEEEEcCCeEEEEEcCC----CeeEEEEeCCCCCeEEEEEcCCC-CEEEEE
Q 001472 46 GKPTALMSLCGLSSPVDSVAFDSAE--VLVLAGASTGVIKLWDLEE----SKMVRTLTGHKSNCTAVEFHPFG-EFFASG 118 (1072)
Q Consensus 46 ~t~~~l~sl~~hs~~ItsLafSPdG--~~LatGS~DGsI~IWDl~t----gk~i~tl~~h~~~VtsLafSPdg-~~LaSg 118 (1072)
..-.....+..+...|++++|+|.. +.+++|...|.|-+||+.+ ..-+..+..|..+|.++.|+|.+ ..+++.
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence 3334445566788999999999954 5788888899999999952 23456677899999999999954 578899
Q ss_pred eCCCeEEEEECCCCeEE--EEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCce-EEEeeecCCceEEEEEcCC
Q 001472 119 CMDTNLKIWDIRKKGCI--HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL-LHDFKFHEGHIRSIDFHPL 195 (1072)
Q Consensus 119 s~DGsI~IWDlrtgk~v--~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~-i~~~~~h~g~ItsLafSPd 195 (1072)
+.||+|+.-|++.+..- .........+..+.|+.+...+++++.=|.+.+||++++.. ...+..|...|.+++++|.
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV 333 (498)
T ss_pred ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence 99999999999876532 22322445678888998888888888888999999998765 5666778889999999995
Q ss_pred -CcEEEEEECCCeEEEEECCCCc----EEEeeCCCCCCeEEEEEeCCCCEEEE-EECCcEEEEEec----CCeeeccccc
Q 001472 196 -EFLLATGSADRTVKFWDLETFE----LIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWE----PVICHDSVDM 265 (1072)
Q Consensus 196 -g~lLaTgS~DGtIrIWDl~tge----~i~~~~~h~~~VtsIafSPDG~~Las-Gsdg~I~Vwd~~----s~~~~~~l~~ 265 (1072)
..+|++++.|++.+|||++... ++.....|...|.++.|||+|-.|++ +.|+.|+|||.. .......+.+
T Consensus 334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~H 413 (498)
T KOG4328|consen 334 CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPH 413 (498)
T ss_pred CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeec
Confidence 5689999999999999998632 23445678888999999998655655 678899999984 2222222211
Q ss_pred ------CCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeE-EEECCCCCccceEEEEEeccC
Q 001472 266 ------GWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTE-VKFNPPGSHSLEKVGIIGRST 338 (1072)
Q Consensus 266 ------~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~Its-VaFSPDGs~lLa~VlaiG~st 338 (1072)
...++...|-|+..++++|-.-..|-|+|-..+....-.. .+....|.+ ..|+|-+.. +++.|...
T Consensus 414 n~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~---~P~~~tI~~vn~~HP~~~~----~~aG~~s~ 486 (498)
T KOG4328|consen 414 NNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH---DPESSTIPSVNEFHPMRDT----LAAGGNSS 486 (498)
T ss_pred cCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc---Cccccccccceeecccccc----eeccCCcc
Confidence 1245567777999999999999999999987776433321 344434444 589998872 44444444
Q ss_pred c
Q 001472 339 S 339 (1072)
Q Consensus 339 G 339 (1072)
|
T Consensus 487 G 487 (498)
T KOG4328|consen 487 G 487 (498)
T ss_pred c
Confidence 4
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.9e-17 Score=178.62 Aligned_cols=298 Identities=19% Similarity=0.348 Sum_probs=209.3
Q ss_pred CCeEEEEEecCCCcEEEEEECCCeEEEEECCCC---------ceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 001472 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGKP---------TALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWD 86 (1072)
Q Consensus 16 g~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~---------~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWD 86 (1072)
.+|..+.|.++....|++|+.|..|+||.+... +.+..+..|...|+++.|+|+|..|++|+.+|.|.+|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 589999999998669999999999999987332 23455778999999999999999999999999999997
Q ss_pred cC--------C--------CeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEE
Q 001472 87 LE--------E--------SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150 (1072)
Q Consensus 87 l~--------t--------gk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLaf 150 (1072)
.. + ......+.+|...|+.++|+|++.++++++.|..+++||+..|.....+..|...+..++|
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvaw 173 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAW 173 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeec
Confidence 65 2 2344566789999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCceEEEee-------------------ecC----CceEEEEEcCCCcEEEEEEC---
Q 001472 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK-------------------FHE----GHIRSIDFHPLEFLLATGSA--- 204 (1072)
Q Consensus 151 SPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~-------------------~h~----g~ItsLafSPdg~lLaTgS~--- 204 (1072)
.|-++++++-+.|...+.+.+...+.++... .|+ .....++|+|+|.+|++...
T Consensus 174 Dpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~ 253 (434)
T KOG1009|consen 174 DPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFK 253 (434)
T ss_pred chhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceee
Confidence 9999999998888877776654433222111 122 22456788999998887642
Q ss_pred -CCeE-----EEEECCC-CcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCCeeecccccCCCeeeeEEecC
Q 001472 205 -DRTV-----KFWDLET-FELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCIND 277 (1072)
Q Consensus 205 -DGtI-----rIWDl~t-ge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spD 277 (1072)
+|.+ ++|+-.. ..+...+.....+...+.|+| ..|.+.+...... ....|-
T Consensus 254 ~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~p-------------Vy~elrp~~~~~~---------~~~lpy 311 (434)
T KOG1009|consen 254 VGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSP-------------VYYELRPLSSEKF---------LFVLPY 311 (434)
T ss_pred eCCceeeceeEeeccccccCceeecCCCCcceEEEEeee-------------eEEEecccccccc---------cccccc
Confidence 1211 2222111 112222222222223333322 2333332211110 111244
Q ss_pred CCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcceEEe
Q 001472 278 GKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRST 344 (1072)
Q Consensus 278 Gk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~i 344 (1072)
+-.+|.++ .+.|.|||.+ ...|+..-. ..|...++.++|++||+ ++++...+|+-.++
T Consensus 312 rlvfaiAt-~~svyvydtq--~~~P~~~v~-nihy~~iTDiaws~dg~-----~l~vSS~DGyCS~v 369 (434)
T KOG1009|consen 312 RLVFAIAT-KNSVYVYDTQ--TLEPLAVVD-NIHYSAITDIAWSDDGS-----VLLVSSTDGFCSLV 369 (434)
T ss_pred ceEEEEee-cceEEEeccc--cccceEEEe-eeeeeeecceeecCCCc-----EEEEeccCCceEEE
Confidence 45566665 4569999654 455555333 67889999999999999 88888888865444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=192.21 Aligned_cols=274 Identities=16% Similarity=0.277 Sum_probs=215.4
Q ss_pred CeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEE
Q 001472 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTL 96 (1072)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl 96 (1072)
.|..++|-|||..+++.+ +..+.|||...|..+..+++|+..|+|++|+.||+.+++|+.|..|.+|.-.-...++
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk-- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK-- 89 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--
Confidence 899999999996666555 3479999999999999999999999999999999999999999999999864322222
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCce
Q 001472 97 TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL 176 (1072)
Q Consensus 97 ~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~ 176 (1072)
..|.+.|.|+.|+|-...|++++-. ..-+|...... +...+ ....+.+++|..||++|+.|-.+|+|.+-+- +++.
T Consensus 90 YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEe 165 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-VSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEE 165 (1081)
T ss_pred eccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-HHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecC-CCCc
Confidence 3589999999999999999998653 47788865443 32222 3356889999999999999999999999864 4544
Q ss_pred EEEee---ecCCceEEEEEcCCC-----cEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEE-ECC
Q 001472 177 LHDFK---FHEGHIRSIDFHPLE-----FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FDD 247 (1072)
Q Consensus 177 i~~~~---~h~g~ItsLafSPdg-----~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasG-sdg 247 (1072)
...+. +.+.+|.+++|+|.. ..+++.....++.+|.+. |+.+..-..-.-...|+.+.++|.|++.| +++
T Consensus 166 k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk 244 (1081)
T KOG1538|consen 166 KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDK 244 (1081)
T ss_pred ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCC
Confidence 44444 356789999999963 578888888899999876 66666555555567899999999999885 677
Q ss_pred cEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCc
Q 001472 248 NLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSH 299 (1072)
Q Consensus 248 ~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~ 299 (1072)
.+.+|.-+.......-+...-++.....|++++++.|..||+|..|++-.+.
T Consensus 245 ~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 245 QLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred ceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhH
Confidence 7888876654443333444445566667999999999999999999875443
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=191.59 Aligned_cols=283 Identities=18% Similarity=0.273 Sum_probs=200.1
Q ss_pred CCCCeEE--EEEec--CCCcEEEEEECCCeEEEEECCCCc------eEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEE
Q 001472 14 HSANVNC--ISIGK--KACRFLITGGDDQKVNLWAIGKPT------ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIK 83 (1072)
Q Consensus 14 Hsg~Vt~--IafSP--dg~~lLaTGs~DGtV~IWDl~t~~------~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~ 83 (1072)
|.-++.- ..|++ ...++|+.+..||.|.|+|..... .+.....|...|..+.|-|....|++++.|.+++
T Consensus 46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r 125 (720)
T KOG0321|consen 46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIR 125 (720)
T ss_pred CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceee
Confidence 3344444 45543 345799999999999999975432 2355678999999999999778899999999999
Q ss_pred EEEcCCCeeEEE--EeCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeE--------------------------
Q 001472 84 LWDLEESKMVRT--LTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKKGC-------------------------- 134 (1072)
Q Consensus 84 IWDl~tgk~i~t--l~~h~~~VtsLafSPdg~-~LaSgs~DGsI~IWDlrtgk~-------------------------- 134 (1072)
+||+.+++++.. +.+|.+.|.++||.|.+. .|++|+.||.|.|||++....
T Consensus 126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 999999888766 889999999999999654 789999999999999874320
Q ss_pred -EEEEecCCCCeEE---EEEcCCCCEEEEEec-CCeEEEEECCCCceEEE--------eeec---CCceEEEEEcCCCcE
Q 001472 135 -IHTYKGHTRGINT---IRFTPDGRWVVSGGF-DNVVKVWDLTAGKLLHD--------FKFH---EGHIRSIDFHPLEFL 198 (1072)
Q Consensus 135 -v~~l~~h~~~Vts---LafSPDG~~LaTGS~-DGsI~IWDl~tgk~i~~--------~~~h---~g~ItsLafSPdg~l 198 (1072)
++..+.+...|.+ +.+..|...||+++. |+.|+|||++....... +..| ...+.++.....|.+
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred cccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence 1111233334444 555668888999887 99999999987643322 1122 234778888888999
Q ss_pred EEEEECCCeEEEEECCCCc--EEEeeCCCCC--CeEEEEEeCCCCEEEEEE-CCcEEEEEecCCeeecccc-cC-CCeee
Q 001472 199 LATGSADRTVKFWDLETFE--LIGSTRPEVT--GVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVD-MG-WSTLG 271 (1072)
Q Consensus 199 LaTgS~DGtIrIWDl~tge--~i~~~~~h~~--~VtsIafSPDG~~LasGs-dg~I~Vwd~~s~~~~~~l~-~~-~s~i~ 271 (1072)
|++.+.|+.|++|++.... ++..+.++.. ....-..+||+.+|++|+ +...++|.+.....-..+. .+ ..+..
T Consensus 286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~ 365 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTT 365 (720)
T ss_pred EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEE
Confidence 9999999999999998643 2333322211 122335689999999984 6668888887654333222 22 22233
Q ss_pred eEEe--cCCCEEEEEEcCCeEEEEEcCC
Q 001472 272 DLCI--NDGKLLGCSFYRNSVGIWVADV 297 (1072)
Q Consensus 272 ~l~s--pDGk~LAsgs~DGsVrIWDlds 297 (1072)
..|. +.+..+.| +.|..++||++..
T Consensus 366 V~w~pS~~t~v~Tc-SdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 366 VRWLPSATTPVATC-SDDFRVKIWRLSN 392 (720)
T ss_pred EeeccccCCCceee-ccCcceEEEeccC
Confidence 3333 45565555 8999999999843
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-15 Score=171.66 Aligned_cols=265 Identities=15% Similarity=0.211 Sum_probs=182.6
Q ss_pred EEEEEECCCeEEEEECCC-Cc--eEEEeeCCCCCeEEEEEcCCCCEEEEEEc-CCeEEEEEcC-CCee--EEEEeCCCCC
Q 001472 30 FLITGGDDQKVNLWAIGK-PT--ALMSLCGLSSPVDSVAFDSAEVLVLAGAS-TGVIKLWDLE-ESKM--VRTLTGHKSN 102 (1072)
Q Consensus 30 lLaTGs~DGtV~IWDl~t-~~--~l~sl~~hs~~ItsLafSPdG~~LatGS~-DGsI~IWDl~-tgk~--i~tl~~h~~~ 102 (1072)
++++...++.|.+|++.+ +. .+..+. +......++++|++++|++++. ++.|.+|++. ++.. +.... ....
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~ 81 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGS 81 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCC
Confidence 344447789999999963 32 334443 3456778999999999887754 7889999997 3432 22222 2345
Q ss_pred eEEEEEcCCCCEEEEEeC-CCeEEEEECCCCe----EEEEEecCCCCeEEEEEcCCCCEEEEEe-cCCeEEEEECCCCce
Q 001472 103 CTAVEFHPFGEFFASGCM-DTNLKIWDIRKKG----CIHTYKGHTRGINTIRFTPDGRWVVSGG-FDNVVKVWDLTAGKL 176 (1072)
Q Consensus 103 VtsLafSPdg~~LaSgs~-DGsI~IWDlrtgk----~v~~l~~h~~~VtsLafSPDG~~LaTGS-~DGsI~IWDl~tgk~ 176 (1072)
...++|+|++++|++++. ++.|.+|++.... .+..+. +.....+++|+|+|+++++++ .++.|.+||+.+...
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 678999999998888764 7899999986422 233232 223467889999999886655 568999999976432
Q ss_pred EEE-----ee-ecCCceEEEEEcCCCcEEEEEEC-CCeEEEEECCC--C--cEEEeeCCC------CCCeEEEEEeCCCC
Q 001472 177 LHD-----FK-FHEGHIRSIDFHPLEFLLATGSA-DRTVKFWDLET--F--ELIGSTRPE------VTGVHAITFHPDGR 239 (1072)
Q Consensus 177 i~~-----~~-~h~g~ItsLafSPdg~lLaTgS~-DGtIrIWDl~t--g--e~i~~~~~h------~~~VtsIafSPDG~ 239 (1072)
+.. .. ........+.|+|+|++|+++.. ++.|.+|++.. + +.+..+... ......+.|+|+|+
T Consensus 161 l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 161 LVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred ccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 211 11 12334678999999999988876 89999999973 2 223333211 11234688999999
Q ss_pred EEEEEE--CCcEEEEEecCCe----eecccccCCCeeeeEEecCCCEEEEEEc-CCeEEEEEcCC
Q 001472 240 TLFSGF--DDNLKVYSWEPVI----CHDSVDMGWSTLGDLCINDGKLLGCSFY-RNSVGIWVADV 297 (1072)
Q Consensus 240 ~LasGs--dg~I~Vwd~~s~~----~~~~l~~~~s~i~~l~spDGk~LAsgs~-DGsVrIWDlds 297 (1072)
+|+++. ++.|.+|+++... ....+..+..+....+++||++|+++.. ++.|.+|+++.
T Consensus 241 ~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 241 HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 999874 4579999996432 2333333445566778899999998775 89999998864
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=185.08 Aligned_cols=242 Identities=19% Similarity=0.334 Sum_probs=185.7
Q ss_pred eEEEEEecC------CCcEEEEEECCCeEEEEECCCC---ceEEE------------------eeCCCCCeEEEEEcCC-
Q 001472 18 VNCISIGKK------ACRFLITGGDDQKVNLWAIGKP---TALMS------------------LCGLSSPVDSVAFDSA- 69 (1072)
Q Consensus 18 Vt~IafSPd------g~~lLaTGs~DGtV~IWDl~t~---~~l~s------------------l~~hs~~ItsLafSPd- 69 (1072)
-.|++|... .++|+|.|+.|..|.|||+.-. .+... -.+|+..|..++|+.+
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 367777543 1379999999999999998321 11111 2357888889999874
Q ss_pred CCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEE
Q 001472 70 EVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPF-GEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTI 148 (1072)
Q Consensus 70 G~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPd-g~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsL 148 (1072)
.+.|++|+.|.+|.+||+.+|++..++..|...|.++.|+|. ..+|++|+.|++|.++|.+........-...+.|-.+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 468899999999999999999999999999999999999995 4689999999999999998533222222245679999
Q ss_pred EEcCCC-CEEEEEecCCeEEEEECCCC-ceEEEeeecCCceEEEEEcCC-CcEEEEEECCCeEEEEECCCCcE--EEeeC
Q 001472 149 RFTPDG-RWVVSGGFDNVVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFEL--IGSTR 223 (1072)
Q Consensus 149 afSPDG-~~LaTGS~DGsI~IWDl~tg-k~i~~~~~h~g~ItsLafSPd-g~lLaTgS~DGtIrIWDl~tge~--i~~~~ 223 (1072)
+|.|.. ..++++..||.|+-+|++.. +++++++.|.+.|.+|++++. -.+|++++.|+.|++|++..... +....
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~ 415 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHS 415 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccc
Confidence 999854 46778889999999999875 899999999999999999985 46889999999999999874332 22222
Q ss_pred CCCCCeEEEEEeCCCCEEE-EEE-CCcEEEEEecCCee
Q 001472 224 PEVTGVHAITFHPDGRTLF-SGF-DDNLKVYSWEPVIC 259 (1072)
Q Consensus 224 ~h~~~VtsIafSPDG~~La-sGs-dg~I~Vwd~~s~~~ 259 (1072)
-..+...|+++.|+-.+++ +|+ .+.++|||+.....
T Consensus 416 ~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 416 FKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 2234467778888755444 444 44599999876543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.8e-17 Score=185.39 Aligned_cols=156 Identities=25% Similarity=0.396 Sum_probs=120.5
Q ss_pred EEEEcC-CCCEEEEEecCCeEEEEECCCC-------ceEEEeeecCCceEEEEEcCC-CcEEEEEECCCeEEEEECCCCc
Q 001472 147 TIRFTP-DGRWVVSGGFDNVVKVWDLTAG-------KLLHDFKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFE 217 (1072)
Q Consensus 147 sLafSP-DG~~LaTGS~DGsI~IWDl~tg-------k~i~~~~~h~g~ItsLafSPd-g~lLaTgS~DGtIrIWDl~tge 217 (1072)
.+.|.| |...|++++.||.|++|.+..+ .....+..|...|+++.|+|- ...|++++.|-+|++||+.+++
T Consensus 632 Dl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~ 711 (1012)
T KOG1445|consen 632 DLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK 711 (1012)
T ss_pred ecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh
Confidence 344555 4456888889999999988654 345667789999999999995 5789999999999999999999
Q ss_pred EEEeeCCCCCCeEEEEEeCCCCEEEE-EECCcEEEEEecCCeee---cccccCCCeeeeEEecCCCEEEEEEcC----Ce
Q 001472 218 LIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWEPVICH---DSVDMGWSTLGDLCINDGKLLGCSFYR----NS 289 (1072)
Q Consensus 218 ~i~~~~~h~~~VtsIafSPDG~~Las-Gsdg~I~Vwd~~s~~~~---~~l~~~~s~i~~l~spDGk~LAsgs~D----Gs 289 (1072)
....+.+|...|.+++|+|||+.+++ |-|+.++||.-...... ..-..+......+|..||.++++.+.| ..
T Consensus 712 ~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQ 791 (1012)
T KOG1445|consen 712 LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQ 791 (1012)
T ss_pred hhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhh
Confidence 99999999999999999999999998 67888999986654321 111223344566788899999988876 45
Q ss_pred EEEEEcCCCceee
Q 001472 290 VGIWVADVSHVEP 302 (1072)
Q Consensus 290 VrIWDlds~~l~~ 302 (1072)
|.+||...-.+.+
T Consensus 792 v~~Y~Aq~l~~~p 804 (1012)
T KOG1445|consen 792 VQMYDAQTLDLRP 804 (1012)
T ss_pred hhhhhhhhccCCc
Confidence 7888765433333
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-17 Score=189.08 Aligned_cols=261 Identities=20% Similarity=0.290 Sum_probs=194.7
Q ss_pred EEEEcC---CCCEEEEEEcCCeEEEEEcCCCee------EEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 001472 63 SVAFDS---AEVLVLAGASTGVIKLWDLEESKM------VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG 133 (1072)
Q Consensus 63 sLafSP---dG~~LatGS~DGsI~IWDl~tgk~------i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk 133 (1072)
+..|++ ....|+.+..+|.|.++|...... +.....|...|..+.|-|....|++++.|.++++||+...+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 366765 446788999999999999864322 34556799999999999966689999999999999999998
Q ss_pred EEEE--EecCCCCeEEEEEcCCC-CEEEEEecCCeEEEEECCCCc---------------------------eEEEeeec
Q 001472 134 CIHT--YKGHTRGINTIRFTPDG-RWVVSGGFDNVVKVWDLTAGK---------------------------LLHDFKFH 183 (1072)
Q Consensus 134 ~v~~--l~~h~~~VtsLafSPDG-~~LaTGS~DGsI~IWDl~tgk---------------------------~i~~~~~h 183 (1072)
++.. +.+|.+.|.++||.|.. ..|++|+.||.|.|||++-.. .+...+.+
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 8776 88999999999999954 578999999999999986321 01112234
Q ss_pred CCceEE---EEEcCCCcEEEEEEC-CCeEEEEECCCCcEEEee--------CCC---CCCeEEEEEeCCCCEEEE-EECC
Q 001472 184 EGHIRS---IDFHPLEFLLATGSA-DRTVKFWDLETFELIGST--------RPE---VTGVHAITFHPDGRTLFS-GFDD 247 (1072)
Q Consensus 184 ~g~Its---LafSPdg~lLaTgS~-DGtIrIWDl~tge~i~~~--------~~h---~~~VtsIafSPDG~~Las-Gsdg 247 (1072)
...|.+ +.+..|...|++++. |+.|++||+++....... ..+ ..++.++..+..|.+|++ +.|+
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 444554 555678888998887 999999999875443221 122 235788888888888876 6788
Q ss_pred cEEEEEecCCeeecc--cc---cCCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECC
Q 001472 248 NLKVYSWEPVICHDS--VD---MGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNP 322 (1072)
Q Consensus 248 ~I~Vwd~~s~~~~~~--l~---~~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSP 322 (1072)
.|++|++........ +. ..........++|+.++++|+.|....+|.++.-...+..+ .+|.-.|++++|.|
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l---~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL---LGHTREVTTVRWLP 370 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh---hCcceEEEEEeecc
Confidence 999999875432211 11 11222334456899999999999999999998665555443 68899999999998
Q ss_pred CCCc
Q 001472 323 PGSH 326 (1072)
Q Consensus 323 DGs~ 326 (1072)
....
T Consensus 371 S~~t 374 (720)
T KOG0321|consen 371 SATT 374 (720)
T ss_pred ccCC
Confidence 6553
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-16 Score=170.55 Aligned_cols=284 Identities=17% Similarity=0.240 Sum_probs=205.9
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEEcCC-----C---e----eEEEEe-CCCCCeEEEEEc-------CCCCEEEEEe
Q 001472 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEE-----S---K----MVRTLT-GHKSNCTAVEFH-------PFGEFFASGC 119 (1072)
Q Consensus 60 ~ItsLafSPdG~~LatGS~DGsI~IWDl~t-----g---k----~i~tl~-~h~~~VtsLafS-------Pdg~~LaSgs 119 (1072)
-...+.|+|||..|++-+.|..+.+|++.. + . ....+. .....|...+|- |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 345789999999999999999999998742 1 0 111111 234567888885 5667899999
Q ss_pred CCCeEEEEECCCCeEEEEEecC--C---CCeEEEEEcCCCCEEEEEecCCeEEEEEC-CCCceE--EE-----eeecCCc
Q 001472 120 MDTNLKIWDIRKKGCIHTYKGH--T---RGINTIRFTPDGRWVVSGGFDNVVKVWDL-TAGKLL--HD-----FKFHEGH 186 (1072)
Q Consensus 120 ~DGsI~IWDlrtgk~v~~l~~h--~---~~VtsLafSPDG~~LaTGS~DGsI~IWDl-~tgk~i--~~-----~~~h~g~ 186 (1072)
.+.-|++||.-+|+....+.+. . ....+++|+|||.+|++|. ...|++||+ +.|... .. -.+..+-
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 9999999999999887776542 2 2467999999999998765 678999999 555421 11 1134677
Q ss_pred eEEEEEcCC-CcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEE--CCcEEEEEecCCee-ecc
Q 001472 187 IRSIDFHPL-EFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF--DDNLKVYSWEPVIC-HDS 262 (1072)
Q Consensus 187 ItsLafSPd-g~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGs--dg~I~Vwd~~s~~~-~~~ 262 (1072)
|.+++|+|. ...+++|+....+-||.-..+.++..+.+|.++|+.+.|.++|..|++|. ++.|..||++.... +-.
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~ 289 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA 289 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence 899999995 45899999999999999889999999999999999999999999999985 56799999985432 222
Q ss_pred cccCC--CeeeeEE--ecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccC
Q 001472 263 VDMGW--STLGDLC--INDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRST 338 (1072)
Q Consensus 263 l~~~~--s~i~~l~--spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~st 338 (1072)
+..+. ....++| -++|++|++|+.||.|++||++.--..+... ..+...++.++++|-=. + ..+..
T Consensus 290 L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~---~~~sd~vNgvslnP~mp-----i--latss 359 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT---GNYSDTVNGVSLNPIMP-----I--LATSS 359 (406)
T ss_pred hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc---ccccccccceecCcccc-----e--eeecc
Confidence 22111 1222233 3899999999999999999987422212211 46788999999999522 2 23345
Q ss_pred cceEEeecCCcccceE
Q 001472 339 SGFRSTSPDYETKDIK 354 (1072)
Q Consensus 339 G~~r~ivpD~et~eI~ 354 (1072)
|-.++..|+.+.+++.
T Consensus 360 Gqr~f~~~~dD~ge~~ 375 (406)
T KOG2919|consen 360 GQRIFKYPKDDNGELE 375 (406)
T ss_pred CceeecCCCccccccc
Confidence 5555666664444443
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-17 Score=184.82 Aligned_cols=218 Identities=16% Similarity=0.323 Sum_probs=185.5
Q ss_pred EEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeC
Q 001472 19 NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG 98 (1072)
Q Consensus 19 t~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~ 98 (1072)
.|++..... .|+++||..|.|+|||+........+++|...|+++.|+....||++++..|.|.|..+.++.....+..
T Consensus 83 ~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 83 FCVACASQS-LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred HHHhhhhcc-eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence 444444433 7899999999999999987777788899999999999999999999999999999999999887777775
Q ss_pred C-CCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEE-ecCCCCeEEEEEcC-CCCEEEEEecCCeEEEEECCCC
Q 001472 99 H-KSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTAG 174 (1072)
Q Consensus 99 h-~~~VtsLafSPdg~-~LaSgs~DGsI~IWDlrtgk~v~~l-~~h~~~VtsLafSP-DG~~LaTGS~DGsI~IWDl~tg 174 (1072)
. ...|..+.|++..+ +|.+++.+|.|.+||+.....++.+ +.|..+...|||+| +..+|++.+.|..|.+||....
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ 241 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence 4 45567999999877 4567788999999999877665544 56889999999999 5567889999999999999977
Q ss_pred ceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCC-cEEEeeCCCCCCeEEEEEeCCC
Q 001472 175 KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF-ELIGSTRPEVTGVHAITFHPDG 238 (1072)
Q Consensus 175 k~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tg-e~i~~~~~h~~~VtsIafSPDG 238 (1072)
.....+. ...+...++|.++|.+|+.|...|.|..||++.. .++..+..|...|++++|-+.-
T Consensus 242 ~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 242 ASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 7666665 4678899999999999999999999999999864 5677888888899999998865
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-16 Score=175.46 Aligned_cols=200 Identities=22% Similarity=0.455 Sum_probs=161.9
Q ss_pred CCCCCeEEEEEcCC--CCEEEEEEcCCeEEEEEcCC----------------CeeEEEEeCCCCCeEEEEEcCCCC-EEE
Q 001472 56 GLSSPVDSVAFDSA--EVLVLAGASTGVIKLWDLEE----------------SKMVRTLTGHKSNCTAVEFHPFGE-FFA 116 (1072)
Q Consensus 56 ~hs~~ItsLafSPd--G~~LatGS~DGsI~IWDl~t----------------gk~i~tl~~h~~~VtsLafSPdg~-~La 116 (1072)
.|.+.+.-+.-++- ..+.++-+..|.|.||++.. .+++.++.+|...-+.++|+|-.. .|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 45566666666654 45666777789999999842 246788889999999999999332 478
Q ss_pred EEeCCCeEEEEECCCCeEE---EEEecCCCCeEEEEEcCCC-CEEEEEecCCeEEEEECCCCc---eEEEeeecCCceEE
Q 001472 117 SGCMDTNLKIWDIRKKGCI---HTYKGHTRGINTIRFTPDG-RWVVSGGFDNVVKVWDLTAGK---LLHDFKFHEGHIRS 189 (1072)
Q Consensus 117 Sgs~DGsI~IWDlrtgk~v---~~l~~h~~~VtsLafSPDG-~~LaTGS~DGsI~IWDl~tgk---~i~~~~~h~g~Its 189 (1072)
+|..-+.|++|...++.-. ..+.+|...|-.++|+|.. ..|++|+.||.|+|||++.+. .+. .+.|.+.|..
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNV 307 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNV 307 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceee
Confidence 8877788999998876532 3456799999999999954 478999999999999999883 333 3789999999
Q ss_pred EEEcCCCcEEEEEECCCeEEEEECCC---CcEEEeeCCCCCCeEEEEEeCC--CCEEEEEECCcEEEEEecC
Q 001472 190 IDFHPLEFLLATGSADRTVKFWDLET---FELIGSTRPEVTGVHAITFHPD--GRTLFSGFDDNLKVYSWEP 256 (1072)
Q Consensus 190 LafSPdg~lLaTgS~DGtIrIWDl~t---ge~i~~~~~h~~~VtsIafSPD--G~~LasGsdg~I~Vwd~~s 256 (1072)
|.|+.+..+|++|+.||+++|||+++ ++++..+.-|..+|++|.|+|. +.++++|.|+.|.+||+..
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 99999988999999999999999986 5678899999999999999984 4455567888999999863
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-16 Score=176.88 Aligned_cols=238 Identities=16% Similarity=0.260 Sum_probs=180.6
Q ss_pred CeEEEEEcC-------CCCEEEEEEcCCeEEEEEcCCCe---eEE------------------EEeCCCCCeEEEEEcCC
Q 001472 60 PVDSVAFDS-------AEVLVLAGASTGVIKLWDLEESK---MVR------------------TLTGHKSNCTAVEFHPF 111 (1072)
Q Consensus 60 ~ItsLafSP-------dG~~LatGS~DGsI~IWDl~tgk---~i~------------------tl~~h~~~VtsLafSPd 111 (1072)
...|++|.. .|+|+|+|+.+..|.|||+.--. +.. .-.+|...|.++.|+..
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 345777743 46899999999999999985211 111 12357788888999875
Q ss_pred C-CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEecCCeEEEEECCCCc-eEEEeeecCCceE
Q 001472 112 G-EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTAGK-LLHDFKFHEGHIR 188 (1072)
Q Consensus 112 g-~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSP-DG~~LaTGS~DGsI~IWDl~tgk-~i~~~~~h~g~It 188 (1072)
- +.||+|+.|.+|++||+.++++...+..|.+.|.++.|+| ...+|++|+.|+++.++|.+... .-..++ ..+.|-
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VE 333 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVE 333 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceE
Confidence 4 4789999999999999999999999999999999999999 45789999999999999998432 223333 467899
Q ss_pred EEEEcCCC-cEEEEEECCCeEEEEECCC-CcEEEeeCCCCCCeEEEEEeCCCCEEEE--EECCcEEEEEecCCeeecc--
Q 001472 189 SIDFHPLE-FLLATGSADRTVKFWDLET-FELIGSTRPEVTGVHAITFHPDGRTLFS--GFDDNLKVYSWEPVICHDS-- 262 (1072)
Q Consensus 189 sLafSPdg-~lLaTgS~DGtIrIWDl~t-ge~i~~~~~h~~~VtsIafSPDG~~Las--Gsdg~I~Vwd~~s~~~~~~-- 262 (1072)
.++|+|.. ..++++..||+|+-+|+++ ++++..+..|.++|.+++++..-..+++ +.++.+++|++........
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~ 413 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE 413 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc
Confidence 99999964 5677788999999999997 4899999999999999999987655544 4567799999976444222
Q ss_pred --cccCCCeeeeEEec-CCCEEEEEEcCCeEEEEEcCCCc
Q 001472 263 --VDMGWSTLGDLCIN-DGKLLGCSFYRNSVGIWVADVSH 299 (1072)
Q Consensus 263 --l~~~~s~i~~l~sp-DGk~LAsgs~DGsVrIWDlds~~ 299 (1072)
+..+. ..+..+.+ ...+++.|+..+.++|||+-...
T Consensus 414 ~~~~~~r-l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 414 HSFKLGR-LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ccccccc-eeecccCCCcceEEEecCccceEEEeecccCh
Confidence 22222 11222223 34578888888899999986443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-16 Score=185.11 Aligned_cols=271 Identities=17% Similarity=0.260 Sum_probs=208.8
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe
Q 001472 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK 139 (1072)
Q Consensus 60 ~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~ 139 (1072)
.|+.++|-|||..|+.+.. ..+.+||..+|..+.++++|.+.|+|++|+.||+.|++|+.|+.|.+|.-+-.. +..+.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkYS 91 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKYS 91 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeeec
Confidence 7889999999998888754 579999999999999999999999999999999999999999999999854333 33343
Q ss_pred cCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEE
Q 001472 140 GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELI 219 (1072)
Q Consensus 140 ~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i 219 (1072)
|.+.|.|+.|+|-...|++++.. ..-+|........ ..+ ....+.+.+|..||.+|+.|..||+|.+-+-. ++..
T Consensus 92 -H~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek 166 (1081)
T KOG1538|consen 92 -HNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEK 166 (1081)
T ss_pred -cCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-hhh-hheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcc
Confidence 88999999999988889988754 4568876543322 222 24568899999999999999999999998643 4443
Q ss_pred EeeC---CCCCCeEEEEEeCCCC-----EEEEE-ECCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCCeE
Q 001472 220 GSTR---PEVTGVHAITFHPDGR-----TLFSG-FDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSV 290 (1072)
Q Consensus 220 ~~~~---~h~~~VtsIafSPDG~-----~LasG-sdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsV 290 (1072)
..+. +...+|.+++|+|... .+++. ...++.+|.+......+.-..++.+.+..++++|.|+..|+.|+.+
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQL 246 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCce
Confidence 3333 3667899999999632 23332 3344555555544444455667788888899999999999999999
Q ss_pred EEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcceEEeecC
Q 001472 291 GIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPD 347 (1072)
Q Consensus 291 rIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD 347 (1072)
++|.-++-.+.... .....|..++..|+|. ..++|..+|.+..+-.-
T Consensus 247 ~~fTR~GvrLGTvg-----~~D~WIWtV~~~PNsQ-----~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 247 SLFTRDGVRLGTVG-----EQDSWIWTVQAKPNSQ-----YVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEeecCeEEeecc-----ccceeEEEEEEccCCc-----eEEEEEccCeeehhhhH
Confidence 99976654444442 3578999999999999 78888888866655443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-15 Score=181.67 Aligned_cols=339 Identities=17% Similarity=0.194 Sum_probs=249.5
Q ss_pred ccCceEEEEecCCCCeEEEEEecCCC--cEEEEEECCCeEEEEECCCCceEEEee-------------------------
Q 001472 3 KRGYKLQEFVAHSANVNCISIGKKAC--RFLITGGDDQKVNLWAIGKPTALMSLC------------------------- 55 (1072)
Q Consensus 3 ktGk~I~~L~gHsg~Vt~IafSPdg~--~lLaTGs~DGtV~IWDl~t~~~l~sl~------------------------- 55 (1072)
.+|.+++.+.+|..++..+.+.|... .++++++.||.|++||...+..+..+.
T Consensus 45 ~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~ 124 (792)
T KOG1963|consen 45 ATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSV 124 (792)
T ss_pred chHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeec
Confidence 46788889999999999999988775 577899999999999875432221110
Q ss_pred ------------------------------------------------------------------------------CC
Q 001472 56 ------------------------------------------------------------------------------GL 57 (1072)
Q Consensus 56 ------------------------------------------------------------------------------~h 57 (1072)
.|
T Consensus 125 ~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~H 204 (792)
T KOG1963|consen 125 EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHH 204 (792)
T ss_pred ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhh
Confidence 12
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC----CeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 001472 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE----SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG 133 (1072)
Q Consensus 58 s~~ItsLafSPdG~~LatGS~DGsI~IWDl~t----gk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk 133 (1072)
...++|.++||+++++++|..||.|.+|.--. ......+..|...|.++.|+++|.+|++|+..|.+.+|.+.+++
T Consensus 205 tf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 205 TFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred cccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 22367889999999999999999999995322 23456778899999999999999999999999999999999988
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeee-----------cCCceEEEEEcCCCcEEEEE
Q 001472 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF-----------HEGHIRSIDFHPLEFLLATG 202 (1072)
Q Consensus 134 ~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~-----------h~g~ItsLafSPdg~lLaTg 202 (1072)
..-+..-.++|..+.++||+.+.+....|..|.+....+......+.+ ..+-.+.++++|.-+.++..
T Consensus 285 -kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln 363 (792)
T KOG1963|consen 285 -KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN 363 (792)
T ss_pred -cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeec
Confidence 455566778999999999999999999999999998766554433332 13346778999977777788
Q ss_pred ECCCeEEEEECCCCcEEEeeCC-----------CCCCeEEEEEeCCCCEEEEEE---------CC--cEEEEEecCCee-
Q 001472 203 SADRTVKFWDLETFELIGSTRP-----------EVTGVHAITFHPDGRTLFSGF---------DD--NLKVYSWEPVIC- 259 (1072)
Q Consensus 203 S~DGtIrIWDl~tge~i~~~~~-----------h~~~VtsIafSPDG~~LasGs---------dg--~I~Vwd~~s~~~- 259 (1072)
+..|.|.+||+.+.+.+..+.. +.-+++.++.+-.|.+++++. ++ .+++|.......
T Consensus 364 ~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt 443 (792)
T KOG1963|consen 364 GHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKT 443 (792)
T ss_pred CCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcce
Confidence 8899999999988766544321 122477888888899999862 22 388898875432
Q ss_pred ---ecccc--cCCCeeeeEEe-c-CCCEEEEEEcCCeEEEEEc------CCCceeeeecCCCCCCCCCeeEEEECCCCCc
Q 001472 260 ---HDSVD--MGWSTLGDLCI-N-DGKLLGCSFYRNSVGIWVA------DVSHVEPYGVGAPEPDQSICTEVKFNPPGSH 326 (1072)
Q Consensus 260 ---~~~l~--~~~s~i~~l~s-p-DGk~LAsgs~DGsVrIWDl------ds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~ 326 (1072)
...+. ++.......+. + ....+++++.||.++||-+ ......+........|..+++.++||-||+
T Consensus 444 ~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs- 522 (792)
T KOG1963|consen 444 FILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS- 522 (792)
T ss_pred eEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc-
Confidence 22222 22222222222 2 2237889999999999987 333333333333345788999999999998
Q ss_pred cceEEEEEeccCcceEEeecCCcc
Q 001472 327 SLEKVGIIGRSTSGFRSTSPDYET 350 (1072)
Q Consensus 327 lLa~VlaiG~stG~~r~ivpD~et 350 (1072)
+++.+..+- +.+.||.+
T Consensus 523 ----lla~s~~~~---Itiwd~~~ 539 (792)
T KOG1963|consen 523 ----LLAVSFDDT---ITIWDYDT 539 (792)
T ss_pred ----EEEEecCCE---EEEecCCC
Confidence 777777775 66667665
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=203.71 Aligned_cols=243 Identities=22% Similarity=0.379 Sum_probs=197.5
Q ss_pred CCeEEEEEecCCCc---EEEEEECCCeEEEEECCCC------ceEEEeeCCCCCeEEEEEcCCC-CEEEEEEcCCeEEEE
Q 001472 16 ANVNCISIGKKACR---FLITGGDDQKVNLWAIGKP------TALMSLCGLSSPVDSVAFDSAE-VLVLAGASTGVIKLW 85 (1072)
Q Consensus 16 g~Vt~IafSPdg~~---lLaTGs~DGtV~IWDl~t~------~~l~sl~~hs~~ItsLafSPdG-~~LatGS~DGsI~IW 85 (1072)
..-+.++|.+.|.. +||.|..||.|.+||...- ..+.....|.+.|..+.|++.. ++|++|+.+|.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45688999988865 6999999999999997542 3455667899999999999955 599999999999999
Q ss_pred EcCCCeeEEEEe--CCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeEEEEEecCCC--CeEEEEEcCCCC-EEEE
Q 001472 86 DLEESKMVRTLT--GHKSNCTAVEFHPF-GEFFASGCMDTNLKIWDIRKKGCIHTYKGHTR--GINTIRFTPDGR-WVVS 159 (1072)
Q Consensus 86 Dl~tgk~i~tl~--~h~~~VtsLafSPd-g~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~--~VtsLafSPDG~-~LaT 159 (1072)
|+..-+.-..+. ...+.|.+++|+.. ...|++++.+|.+.|||++..+.+..+..+.. .+..++|+|++. .|++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 998754333331 24577999999874 45788889999999999999887777765543 478899999764 4555
Q ss_pred EecCC---eEEEEECCCC-ceEEEeeecCCceEEEEEcCCC-cEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEE
Q 001472 160 GGFDN---VVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPLE-FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITF 234 (1072)
Q Consensus 160 GS~DG---sI~IWDl~tg-k~i~~~~~h~g~ItsLafSPdg-~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIaf 234 (1072)
++.|. .|.+||++.- ..++.+.+|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+.....++..+.|
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w 304 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQW 304 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeee
Confidence 55443 7999999865 4677788999999999999965 89999999999999999999999999988889999999
Q ss_pred eCCCCEEE-E-EECCcEEEEEecCCe
Q 001472 235 HPDGRTLF-S-GFDDNLKVYSWEPVI 258 (1072)
Q Consensus 235 SPDG~~La-s-Gsdg~I~Vwd~~s~~ 258 (1072)
+|..--++ + ..+|.|.||.+....
T Consensus 305 ~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 305 CPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cCCCcchhhhheeccceeeeeeecCC
Confidence 99766333 3 578899999987654
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-16 Score=167.70 Aligned_cols=244 Identities=17% Similarity=0.291 Sum_probs=183.8
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC----eeEEEEeCCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEE
Q 001472 55 CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES----KMVRTLTGHKSNCTAVEFHP--FGEFFASGCMDTNLKIWD 128 (1072)
Q Consensus 55 ~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tg----k~i~tl~~h~~~VtsLafSP--dg~~LaSgs~DGsI~IWD 128 (1072)
.+|..-|.++.|.+.|+.+++|+.|++|+|||..+. .+....+.|.+.|..+.|.+ .|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 467788999999999999999999999999997533 45667788999999999965 689999999999999997
Q ss_pred CCC---------CeEEEEEecCCCCeEEEEEcC--CCCEEEEEecCCeEEEEECCCC------ceEEEee-------ecC
Q 001472 129 IRK---------KGCIHTYKGHTRGINTIRFTP--DGRWVVSGGFDNVVKVWDLTAG------KLLHDFK-------FHE 184 (1072)
Q Consensus 129 lrt---------gk~v~~l~~h~~~VtsLafSP--DG~~LaTGS~DGsI~IWDl~tg------k~i~~~~-------~h~ 184 (1072)
-.. ......+......|+.++|.| -|-.|++++.||.|+||+.-.. .+..+++ .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 421 123345556677899999999 4668999999999999986543 3333333 355
Q ss_pred CceEEEEEcCC---CcEEEEEECC-----CeEEEEECCCC----cEEEeeCCCCCCeEEEEEeCC----CCEEEEEECCc
Q 001472 185 GHIRSIDFHPL---EFLLATGSAD-----RTVKFWDLETF----ELIGSTRPEVTGVHAITFHPD----GRTLFSGFDDN 248 (1072)
Q Consensus 185 g~ItsLafSPd---g~lLaTgS~D-----GtIrIWDl~tg----e~i~~~~~h~~~VtsIafSPD----G~~LasGsdg~ 248 (1072)
....|+.|+|. ..+|++|+.+ +.++||..... ..+..+..+..+|+.|+|.|+ -..|++++.++
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 66889999984 4678888765 47888876543 346677889999999999996 35677787777
Q ss_pred EEEEEecCCe--------------------eecccccCC-CeeeeEEecCCCEEEEEEcCCeEEEEEcCCC
Q 001472 249 LKVYSWEPVI--------------------CHDSVDMGW-STLGDLCINDGKLLGCSFYRNSVGIWVADVS 298 (1072)
Q Consensus 249 I~Vwd~~s~~--------------------~~~~l~~~~-s~i~~l~spDGk~LAsgs~DGsVrIWDlds~ 298 (1072)
|+||.+.... .+..+..+. .+..+.|--.|..|++++.||+|++|.....
T Consensus 250 v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 250 VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 9999987421 112233333 3333344457889999999999999976543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-16 Score=169.46 Aligned_cols=282 Identities=18% Similarity=0.329 Sum_probs=210.0
Q ss_pred EecCCCCeEEEEEec----CCCcEEEEEECCCeEEEEECCCCc---eEEEe--eCCCCCeEEEEEcCC----CCEEEEEE
Q 001472 11 FVAHSANVNCISIGK----KACRFLITGGDDQKVNLWAIGKPT---ALMSL--CGLSSPVDSVAFDSA----EVLVLAGA 77 (1072)
Q Consensus 11 L~gHsg~Vt~IafSP----dg~~lLaTGs~DGtV~IWDl~t~~---~l~sl--~~hs~~ItsLafSPd----G~~LatGS 77 (1072)
...|..+|..++|.+ +....+++.|. ..+.||...... .++.+ ..|....+.++|+-+ ..++++|+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 457889999999984 33356677665 478899875433 23333 236677888999753 34889999
Q ss_pred cCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEE---ecCCCCeEEEEEcCC
Q 001472 78 STGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGCIHTY---KGHTRGINTIRFTPD 153 (1072)
Q Consensus 78 ~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg-~~LaSgs~DGsI~IWDlrtgk~v~~l---~~h~~~VtsLafSPD 153 (1072)
.-|.|+|.|+.+++....+.+|...|..+.|+|+. +++++++.|..|++|++++..++..+ .+|.+.|.++.|+++
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD 192 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence 99999999999999999999999999999999965 68899999999999999999998877 468999999999999
Q ss_pred CCEEEEEecCCeEEEEECCCCce------EE----------------------EeeecCCceEEEEEcCCCcEEEEEECC
Q 001472 154 GRWVVSGGFDNVVKVWDLTAGKL------LH----------------------DFKFHEGHIRSIDFHPLEFLLATGSAD 205 (1072)
Q Consensus 154 G~~LaTGS~DGsI~IWDl~tgk~------i~----------------------~~~~h~g~ItsLafSPdg~lLaTgS~D 205 (1072)
|.+|++++.|..|++|++...+. .. +-..|...|.|+.|- |+++++-+-+
T Consensus 193 gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksce 270 (385)
T KOG1034|consen 193 GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCE 270 (385)
T ss_pred CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccC
Confidence 99999999999999999973211 00 111244445555554 6888888888
Q ss_pred CeEEEEECC-CCcE-------------EEeeCCCCCCeEEE--EEeCCCCEEEEEE-CCcEEEEEecCCeeeccc-----
Q 001472 206 RTVKFWDLE-TFEL-------------IGSTRPEVTGVHAI--TFHPDGRTLFSGF-DDNLKVYSWEPVICHDSV----- 263 (1072)
Q Consensus 206 GtIrIWDl~-tge~-------------i~~~~~h~~~VtsI--afSPDG~~LasGs-dg~I~Vwd~~s~~~~~~l----- 263 (1072)
+.|..|... -.+. +..+.-....|.-+ +|.+-++.|+.|. .|.+++||++........
T Consensus 271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s 350 (385)
T KOG1034|consen 271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS 350 (385)
T ss_pred ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec
Confidence 999999872 2222 22333333445544 4556688899875 556999999876553211
Q ss_pred ccCCCeeeeEEecCCCEEEEEEcCCeEEEEEc
Q 001472 264 DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1072)
Q Consensus 264 ~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDl 295 (1072)
..+..+....++.||.+|+....|+.|.-||.
T Consensus 351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 12234445667789999999999999999974
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-14 Score=162.23 Aligned_cols=285 Identities=14% Similarity=0.190 Sum_probs=186.8
Q ss_pred EEEcCCeEEEEEcCC-Ce--eEEEEeCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC-CeE--EEEEecCCCCeEE
Q 001472 75 AGASTGVIKLWDLEE-SK--MVRTLTGHKSNCTAVEFHPFGEFFASGC-MDTNLKIWDIRK-KGC--IHTYKGHTRGINT 147 (1072)
Q Consensus 75 tGS~DGsI~IWDl~t-gk--~i~tl~~h~~~VtsLafSPdg~~LaSgs-~DGsI~IWDlrt-gk~--v~~l~~h~~~Vts 147 (1072)
+...++.|.+||+.+ ++ .+..+. +.+....+.++|++++|++++ .++.|.+|++.. +.. +.... .......
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~ 84 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTH 84 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceE
Confidence 336689999999964 33 444444 345677899999999987765 478899999873 332 22222 2335678
Q ss_pred EEEcCCCCEEEEEec-CCeEEEEECCCC-c---eEEEeeecCCceEEEEEcCCCcEEEEEE-CCCeEEEEECCCCcEEEe
Q 001472 148 IRFTPDGRWVVSGGF-DNVVKVWDLTAG-K---LLHDFKFHEGHIRSIDFHPLEFLLATGS-ADRTVKFWDLETFELIGS 221 (1072)
Q Consensus 148 LafSPDG~~LaTGS~-DGsI~IWDl~tg-k---~i~~~~~h~g~ItsLafSPdg~lLaTgS-~DGtIrIWDl~tge~i~~ 221 (1072)
++|+|++++|++++. ++.|.+|++.+. . .+..+. +.....+++++|+++++++++ .++.|.+||+.+...+..
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 999999998887764 789999999642 2 222222 233467789999998886655 568999999986332211
Q ss_pred -----e-CCCCCCeEEEEEeCCCCEEEEEE--CCcEEEEEecCC--e--eeccccc-------CCCeeeeEEecCCCEEE
Q 001472 222 -----T-RPEVTGVHAITFHPDGRTLFSGF--DDNLKVYSWEPV--I--CHDSVDM-------GWSTLGDLCINDGKLLG 282 (1072)
Q Consensus 222 -----~-~~h~~~VtsIafSPDG~~LasGs--dg~I~Vwd~~s~--~--~~~~l~~-------~~s~i~~l~spDGk~LA 282 (1072)
. .........++|+|+|+++++.. ++.|.+|+++.. . ....+.. ........++|+|++++
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly 243 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY 243 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE
Confidence 1 11234578899999999998865 577999999742 2 1222111 11122456779999998
Q ss_pred EEE-cCCeEEEEEcCCCc--eeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcceEEeecCCcccceEEEeec
Q 001472 283 CSF-YRNSVGIWVADVSH--VEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVD 359 (1072)
Q Consensus 283 sgs-~DGsVrIWDlds~~--l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD~et~eI~~i~iD 359 (1072)
++. .++.|.+|+++... ...... .........+.|+|||+++++ .....+.+.++..+.+++.+..+..-
T Consensus 244 v~~~~~~~I~v~~i~~~~~~~~~~~~---~~~~~~p~~~~~~~dg~~l~v----a~~~~~~v~v~~~~~~~g~l~~~~~~ 316 (330)
T PRK11028 244 ACDRTASLISVFSVSEDGSVLSFEGH---QPTETQPRGFNIDHSGKYLIA----AGQKSHHISVYEIDGETGLLTELGRY 316 (330)
T ss_pred EecCCCCeEEEEEEeCCCCeEEEeEE---EeccccCCceEECCCCCEEEE----EEccCCcEEEEEEcCCCCcEEEcccc
Confidence 885 46899999985432 222221 111235567899999996333 33345666777777677777665554
Q ss_pred CCCCccceee
Q 001472 360 STGGKPVASQ 369 (1072)
Q Consensus 360 s~gGepv~~~ 369 (1072)
..|+.|+.+.
T Consensus 317 ~~g~~P~~~~ 326 (330)
T PRK11028 317 AVGQGPMWVS 326 (330)
T ss_pred ccCCCceEEE
Confidence 4566666443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-15 Score=164.57 Aligned_cols=238 Identities=18% Similarity=0.321 Sum_probs=183.3
Q ss_pred CeEEEEEecCCCcEEEEEECCCeEEEEECCC-----C--c-----eEEEe-eCCCCCeEEEEEc-------CCCCEEEEE
Q 001472 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGK-----P--T-----ALMSL-CGLSSPVDSVAFD-------SAEVLVLAG 76 (1072)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t-----~--~-----~l~sl-~~hs~~ItsLafS-------PdG~~LatG 76 (1072)
-...+.|+||| ..|++-+.|..+++|++.. + . ....+ ......|+..+|- |+..++++.
T Consensus 51 f~kgckWSPDG-SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDG-SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhccceeCCCC-ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 34567899999 6788888999999998721 1 0 01111 1234567777775 677899999
Q ss_pred EcCCeEEEEEcCCCeeEEEEeC--CCC---CeEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCeEEEEE-------ecCCC
Q 001472 77 ASTGVIKLWDLEESKMVRTLTG--HKS---NCTAVEFHPFGEFFASGCMDTNLKIWDI-RKKGCIHTY-------KGHTR 143 (1072)
Q Consensus 77 S~DGsI~IWDl~tgk~i~tl~~--h~~---~VtsLafSPdg~~LaSgs~DGsI~IWDl-rtgk~v~~l-------~~h~~ 143 (1072)
+.+.-|++||.-+|+....+.. |.+ ...+++|+|||.+|++| ....|++||+ +.|.....+ .+..+
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 9999999999999998776653 332 35689999999999887 5788999999 555422111 12356
Q ss_pred CeEEEEEcC-CCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEEC-CCeEEEEECCC-CcEEE
Q 001472 144 GINTIRFTP-DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA-DRTVKFWDLET-FELIG 220 (1072)
Q Consensus 144 ~VtsLafSP-DG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~-DGtIrIWDl~t-ge~i~ 220 (1072)
-+.|++|+| +.+.+++|+....+-||.-..+.++..+-+|.+.|+.++|+++|+.|++|.. |-.|..||++. ..++.
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence 789999999 5558999999999999988888999999999999999999999999999875 67899999986 44566
Q ss_pred eeCCCCC-CeEEEE--EeCCCCEEEEE-ECCcEEEEEecC
Q 001472 221 STRPEVT-GVHAIT--FHPDGRTLFSG-FDDNLKVYSWEP 256 (1072)
Q Consensus 221 ~~~~h~~-~VtsIa--fSPDG~~LasG-sdg~I~Vwd~~s 256 (1072)
.+..|.+ .-..|. ..|+|++|++| .+|.|.+||++.
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 6666655 333444 45889999998 678899999987
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-15 Score=172.53 Aligned_cols=270 Identities=16% Similarity=0.281 Sum_probs=203.4
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEE
Q 001472 51 LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGE--FFASGCMDTNLKIWD 128 (1072)
Q Consensus 51 l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~--~LaSgs~DGsI~IWD 128 (1072)
...+.+|.+.|.++...|.|.+|++|+.||+|+||.+.+|.+++.+. ..+.|.|++|+|.+. .||++-. ..+.|.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG-ECVLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEec-CceEEeC
Confidence 34568999999999999999999999999999999999999999887 567899999999776 3444432 2243333
Q ss_pred CCCC-------------------------------------eEEEEEecCCCCeEEEEEcCCCCEEEEEecC---CeEEE
Q 001472 129 IRKK-------------------------------------GCIHTYKGHTRGINTIRFTPDGRWVVSGGFD---NVVKV 168 (1072)
Q Consensus 129 lrtg-------------------------------------k~v~~l~~h~~~VtsLafSPDG~~LaTGS~D---GsI~I 168 (1072)
..-| .-++..-.|...|..+.|+..|.||++..-+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 2111 0122223477789999999999999987654 47999
Q ss_pred EECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEE-CC
Q 001472 169 WDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DD 247 (1072)
Q Consensus 169 WDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGs-dg 247 (1072)
+++.......-|.-..+.|.++.|+|...+|++++. ..|+|||+...+.++.+......|.+++.+|.|..|++|+ ++
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 999888777777667788999999999999998886 6899999999888888888888899999999998888875 56
Q ss_pred cEEEEEecCC-eeecccccCCCee-eeEEecCCCEEEEEEcCCeEEEEEc-------CCCceeeeecCCCCCCCC----C
Q 001472 248 NLKVYSWEPV-ICHDSVDMGWSTL-GDLCINDGKLLGCSFYRNSVGIWVA-------DVSHVEPYGVGAPEPDQS----I 314 (1072)
Q Consensus 248 ~I~Vwd~~s~-~~~~~l~~~~s~i-~~l~spDGk~LAsgs~DGsVrIWDl-------ds~~l~~~~v~~~~~~~~----~ 314 (1072)
.+..||++-. +..+.+..+...+ .+++...-.+|++|+.||.+.|+.. ....+.|+... .+|.. .
T Consensus 630 k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L--~gH~~~~~~g 707 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL--RGHEKTNDLG 707 (733)
T ss_pred eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec--cCceeecccc
Confidence 6888888754 3334444443333 3344445568899999999999853 22234555432 34543 4
Q ss_pred eeEEEECCCCC
Q 001472 315 CTEVKFNPPGS 325 (1072)
Q Consensus 315 ItsVaFSPDGs 325 (1072)
|..+.|+|..-
T Consensus 708 VLd~~wHP~qp 718 (733)
T KOG0650|consen 708 VLDTIWHPRQP 718 (733)
T ss_pred eEeecccCCCc
Confidence 88889999777
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=169.28 Aligned_cols=206 Identities=17% Similarity=0.324 Sum_probs=170.6
Q ss_pred EEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCC-------ceEEEeeCCCCCeEEEEEcCC-CCEEEEEEcCCe
Q 001472 10 EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP-------TALMSLCGLSSPVDSVAFDSA-EVLVLAGASTGV 81 (1072)
Q Consensus 10 ~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~-------~~l~sl~~hs~~ItsLafSPd-G~~LatGS~DGs 81 (1072)
.+.||+++|..++|+|.+...||+|+.|.+|.||++..+ +.+..+.+|...|.-++|+|. .+.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 467999999999999999899999999999999998543 446778899999999999994 578899999999
Q ss_pred EEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC-CeEEEEEcCCCCEEEEE
Q 001472 82 IKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTR-GINTIRFTPDGRWVVSG 160 (1072)
Q Consensus 82 I~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~-~VtsLafSPDG~~LaTG 160 (1072)
|.+|++.+|+.+.++. |.+.|+++.|+.||.+|++++.|..|+|||.++++.+..-.+|.+ .-..+.|..+|.++-+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999888888 999999999999999999999999999999999999988876654 35567788889855544
Q ss_pred e---cCCeEEEEECCCCc---eEEEeeecCCceEEEEEcCCCcEEEEEE-CCCeEEEEECCCCc
Q 001472 161 G---FDNVVKVWDLTAGK---LLHDFKFHEGHIRSIDFHPLEFLLATGS-ADRTVKFWDLETFE 217 (1072)
Q Consensus 161 S---~DGsI~IWDl~tgk---~i~~~~~h~g~ItsLafSPdg~lLaTgS-~DGtIrIWDl~tge 217 (1072)
. .+..+.+||....+ ...++.. ...|.---|.+|..+++.++ .|+.|+.|.+..-.
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 3 36789999976543 3444443 33455556888887776555 69999999988654
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=166.44 Aligned_cols=239 Identities=22% Similarity=0.385 Sum_probs=185.4
Q ss_pred CCCCeEEEEEecC---CCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEEcCC
Q 001472 14 HSANVNCISIGKK---ACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE-VLVLAGASTGVIKLWDLEE 89 (1072)
Q Consensus 14 Hsg~Vt~IafSPd---g~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG-~~LatGS~DGsI~IWDl~t 89 (1072)
|...-..++|+-+ +.-+||.||.-|.|+|.|+.+++....+.+|...|..+.|+|+. +++++++.|..|++|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 5666777888765 34589999999999999999999999999999999999999955 7899999999999999999
Q ss_pred CeeEEEEe---CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE----------------------------EE
Q 001472 90 SKMVRTLT---GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH----------------------------TY 138 (1072)
Q Consensus 90 gk~i~tl~---~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~----------------------------~l 138 (1072)
..++..+- +|.+.|.++.|+.+|.+|++++.|..|++|++...+... +-
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 99888764 699999999999999999999999999999997322100 11
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECC-CC-------------ceEEEeeecCCceEE--EEEcCCCcEEEEE
Q 001472 139 KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT-AG-------------KLLHDFKFHEGHIRS--IDFHPLEFLLATG 202 (1072)
Q Consensus 139 ~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~-tg-------------k~i~~~~~h~g~Its--LafSPdg~lLaTg 202 (1072)
..|...|.|+.|. |.++++-+-++.|..|... -+ ..+..+......|.- .+|.|.++.|+.|
T Consensus 248 diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g 325 (385)
T KOG1034|consen 248 DIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG 325 (385)
T ss_pred ccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence 2355566777776 5789988888999999872 11 123334444444544 4566778999999
Q ss_pred ECCCeEEEEECCCCcEEE--ee--CCCCCCeEEEEEeCCCCEEEEEEC-CcEEEEEe
Q 001472 203 SADRTVKFWDLETFELIG--ST--RPEVTGVHAITFHPDGRTLFSGFD-DNLKVYSW 254 (1072)
Q Consensus 203 S~DGtIrIWDl~tge~i~--~~--~~h~~~VtsIafSPDG~~LasGsd-g~I~Vwd~ 254 (1072)
...|.|++||++..++.. ++ ......|+..+|+.||.+|+...+ +.+.-||+
T Consensus 326 nq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 326 NQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 999999999999866521 11 222356999999999999987654 45555554
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-17 Score=194.32 Aligned_cols=246 Identities=24% Similarity=0.423 Sum_probs=196.6
Q ss_pred cCceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEE
Q 001472 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIK 83 (1072)
Q Consensus 4 tGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~ 83 (1072)
..+-++.|.||.+.|.|..|...| +++++|+.|..++||..+++.++....+|.+.|+.++.+.+..++++++.|..|+
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence 344466789999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------eEEEEEe----------
Q 001472 84 LWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK--------------GCIHTYK---------- 139 (1072)
Q Consensus 84 IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtg--------------k~v~~l~---------- 139 (1072)
+|.+.++.++..+.+|.+.|++++|+|-. +.+.||++++||.+-. ..+..+.
T Consensus 258 vWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred EEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence 99999999999999999999999999954 6778999999998710 0110000
Q ss_pred ------cCCCCeEEEEEcCCCCEEE-----------EEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCC-cEEEE
Q 001472 140 ------GHTRGINTIRFTPDGRWVV-----------SGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE-FLLAT 201 (1072)
Q Consensus 140 ------~h~~~VtsLafSPDG~~La-----------TGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg-~lLaT 201 (1072)
.....+-+++|...+-.++ ++-.+..+++|++.+|...+.+.+|...+..+.++|-. .+..+
T Consensus 334 gs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS 413 (1113)
T ss_pred ccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh
Confidence 0011122333333222233 33345568899999999999999999999999999954 56678
Q ss_pred EECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEEC-CcEEEEEe
Q 001472 202 GSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFD-DNLKVYSW 254 (1072)
Q Consensus 202 gS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsd-g~I~Vwd~ 254 (1072)
++.||...|||+..|.++.......+.+....|++||..++...+ |.++|+..
T Consensus 414 ag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 414 AGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred ccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEecc
Confidence 899999999999999887776655677888999999999888754 34555544
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=174.01 Aligned_cols=262 Identities=20% Similarity=0.222 Sum_probs=191.2
Q ss_pred CCeEEEEECCCCceEEEeeCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEcCCCee--EE----EEeCCCCCeEEEEEc
Q 001472 37 DQKVNLWAIGKPTALMSLCGLSSPVDSVAFDS-AEVLVLAGASTGVIKLWDLEESKM--VR----TLTGHKSNCTAVEFH 109 (1072)
Q Consensus 37 DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSP-dG~~LatGS~DGsI~IWDl~tgk~--i~----tl~~h~~~VtsLafS 109 (1072)
++.+.||++...............|.|+.|+| +..+|+.|+.+|.|.+||+..+.. .. ....|..+|..+.|.
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 35799999977754444445678899999999 667888899999999999987654 22 223588999999997
Q ss_pred CCCC--EEEEEeCCCeEEEEECCCCeE------EEEEe------cCCCCeEEEEEcC-CCCEEEEEecCCeEEEEECCC-
Q 001472 110 PFGE--FFASGCMDTNLKIWDIRKKGC------IHTYK------GHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTA- 173 (1072)
Q Consensus 110 Pdg~--~LaSgs~DGsI~IWDlrtgk~------v~~l~------~h~~~VtsLafSP-DG~~LaTGS~DGsI~IWDl~t- 173 (1072)
.+.. -|++++.||.|..|+++.-.. ..... .....+++++|.+ +-..|++|+++|.|..-.-..
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 6544 499999999999998764322 11111 1234588999988 456789999999988743322
Q ss_pred --Cc-----eEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECC-CCcEEEeeCCCCCCeEEEEEeCCCCEEEE-E
Q 001472 174 --GK-----LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLE-TFELIGSTRPEVTGVHAITFHPDGRTLFS-G 244 (1072)
Q Consensus 174 --gk-----~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~-tge~i~~~~~h~~~VtsIafSPDG~~Las-G 244 (1072)
+. .+..+..|.++|.++.++|-+..++..+.|.+++||... ...++..+..+...+++++|||..-.+++ +
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence 21 233556789999999999987666655569999999988 66777777777777999999998655554 3
Q ss_pred -ECCcEEEEEecCCee--ecccccCCCeeeeEE-ecCCCEEEEEEcCCeEEEEEcCCC
Q 001472 245 -FDDNLKVYSWEPVIC--HDSVDMGWSTLGDLC-INDGKLLGCSFYRNSVGIWVADVS 298 (1072)
Q Consensus 245 -sdg~I~Vwd~~s~~~--~~~l~~~~s~i~~l~-spDGk~LAsgs~DGsVrIWDlds~ 298 (1072)
.+|.+.+||+..... ..............+ ++.|++|++|...|.+.+|++...
T Consensus 461 d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 467799999865433 222333334444444 456999999999999999998533
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-16 Score=194.65 Aligned_cols=212 Identities=21% Similarity=0.455 Sum_probs=179.7
Q ss_pred ceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEee--CCCCCeEEEEEcCC-CCEEEEEEcCCeE
Q 001472 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLC--GLSSPVDSVAFDSA-EVLVLAGASTGVI 82 (1072)
Q Consensus 6 k~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~--~hs~~ItsLafSPd-G~~LatGS~DGsI 82 (1072)
..+.++..|+|.|..+.|++..+++||+|+.||.|.|||+.+.+...... .....|.+++|+.. ...|++++.+|.+
T Consensus 107 ~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~ 186 (1049)
T KOG0307|consen 107 EVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRA 186 (1049)
T ss_pred HHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCc
Confidence 35677889999999999999998899999999999999998876655552 24578999999974 4678888889999
Q ss_pred EEEEcCCCeeEEEEeCCCC--CeEEEEEcCCCC-EEEEEeCC---CeEEEEECCCC-eEEEEEecCCCCeEEEEEcCCC-
Q 001472 83 KLWDLEESKMVRTLTGHKS--NCTAVEFHPFGE-FFASGCMD---TNLKIWDIRKK-GCIHTYKGHTRGINTIRFTPDG- 154 (1072)
Q Consensus 83 ~IWDl~tgk~i~tl~~h~~--~VtsLafSPdg~-~LaSgs~D---GsI~IWDlrtg-k~v~~l~~h~~~VtsLafSPDG- 154 (1072)
.|||++..+.+..+..+.. .+..+.|||++. .+++++.| -.|.+||++.- ..++.+.+|..+|.++.|++.+
T Consensus 187 ~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~ 266 (1049)
T KOG0307|consen 187 VIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDP 266 (1049)
T ss_pred eeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCc
Confidence 9999999888777765544 478899999874 56666554 35999998854 4677788999999999999955
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCC-cEEEEEECCCeEEEEECCCCc
Q 001472 155 RWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE-FLLATGSADRTVKFWDLETFE 217 (1072)
Q Consensus 155 ~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg-~lLaTgS~DGtIrIWDl~tge 217 (1072)
.+|++++.|+.|.+|+.++++.+..+.....++..+.|+|.. ..+++++-||.|.||.+....
T Consensus 267 ~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 267 RLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred hhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 899999999999999999999999999888899999999965 488889999999999997654
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=172.54 Aligned_cols=264 Identities=16% Similarity=0.233 Sum_probs=199.0
Q ss_pred cCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEE-Ec-------CCCCEEEEEEcCCeEEE
Q 001472 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVA-FD-------SAEVLVLAGASTGVIKL 84 (1072)
Q Consensus 13 gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLa-fS-------PdG~~LatGS~DGsI~I 84 (1072)
.|...|.|+.|+... .. +..+.|..+.+|.-........+......+.... .- .....|+.++.||.+.|
T Consensus 12 r~~e~vc~v~w~~~e-ei-~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNE-EI-YFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred ccceeEEeecccccc-eE-EEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 567778899998876 34 4445566666664322222222211111111111 11 12347888899999999
Q ss_pred EEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCC
Q 001472 85 WDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN 164 (1072)
Q Consensus 85 WDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DG 164 (1072)
.+ ..++.-..+..|.+.+.+-.|+|+|.-|++++.||.|++|. ++|-.-.++-....+|+|++|.|+..-++.+- .+
T Consensus 90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~ 166 (737)
T KOG1524|consen 90 LN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GG 166 (737)
T ss_pred ec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CC
Confidence 87 46777777889999999999999999999999999999998 56654444444567899999999888766653 56
Q ss_pred eEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEE
Q 001472 165 VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG 244 (1072)
Q Consensus 165 sI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasG 244 (1072)
.+.|=.+.....+..++.|++-|.++.|++..+++++|+.|-..++||-. |..+..-..|..+|++++|.|+ +.++.|
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~ 244 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLW 244 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeee
Confidence 78888888777888899999999999999999999999999999999965 7778888889999999999999 777777
Q ss_pred ECCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCCeEEEE
Q 001472 245 FDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIW 293 (1072)
Q Consensus 245 sdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrIW 293 (1072)
+-+.+++= -....+++...|++||..+++|...|.+.+=
T Consensus 245 S~nt~R~~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 245 SYNTARFS----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeeeec----------CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 77666621 1223467788899999999999999877553
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.4e-14 Score=154.21 Aligned_cols=234 Identities=16% Similarity=0.265 Sum_probs=184.2
Q ss_pred CCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcC--CeEEEEEcCCCee
Q 001472 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAST--GVIKLWDLEESKM 92 (1072)
Q Consensus 15 sg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~D--GsI~IWDl~tgk~ 92 (1072)
...+..+.|..+. .+|..|+.|| .++|.................|..+-|+. .+++..+.+ ..++++++..+..
T Consensus 5 ~~ti~~~~~Nqd~-~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDS-TLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred Ccceeeeeeccce-eEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce
Confidence 3467788899887 7888888888 57787765554433333444566677764 455555544 4599999988888
Q ss_pred EEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec---CCCCeEEEEEcCCCCEEEEEe--cCCeEE
Q 001472 93 VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG---HTRGINTIRFTPDGRWVVSGG--FDNVVK 167 (1072)
Q Consensus 93 i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~---h~~~VtsLafSPDG~~LaTGS--~DGsI~ 167 (1072)
+..+. ....|.++.++ -+.|+++-. ..|+|||+++.+.++++.. +..++.++.+++.+.||+.-+ ..|.|.
T Consensus 81 ICe~~-fpt~IL~VrmN--r~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMN--RKRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred EEEEe-cCCceEEEEEc--cceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 88776 56789999997 455666544 4599999999999888764 344577777777777988744 468999
Q ss_pred EEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCe-EEEEECCCCcEEEeeCCCC--CCeEEEEEeCCCCEEEEE
Q 001472 168 VWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT-VKFWDLETFELIGSTRPEV--TGVHAITFHPDGRTLFSG 244 (1072)
Q Consensus 168 IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGt-IrIWDl~tge~i~~~~~h~--~~VtsIafSPDG~~LasG 244 (1072)
+||+.+-+.+..+.+|.+.+.+++|+++|.+||+++..|+ |++|.+.+|+.+..|+... ..|.+++|++++++|++.
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 9999999999999999999999999999999999999998 7999999999999887654 358899999999999985
Q ss_pred -ECCcEEEEEecC
Q 001472 245 -FDDNLKVYSWEP 256 (1072)
Q Consensus 245 -sdg~I~Vwd~~s 256 (1072)
..++|.||.++.
T Consensus 237 S~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 237 SNTETVHIFKLEK 249 (391)
T ss_pred cCCCeEEEEEecc
Confidence 456799999864
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.3e-15 Score=163.18 Aligned_cols=204 Identities=21% Similarity=0.364 Sum_probs=169.8
Q ss_pred EEeCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe-------EEEEEecCCCCeEEEEEcCC-CCEEEEEecCCe
Q 001472 95 TLTGHKSNCTAVEFHPF-GEFFASGCMDTNLKIWDIRKKG-------CIHTYKGHTRGINTIRFTPD-GRWVVSGGFDNV 165 (1072)
Q Consensus 95 tl~~h~~~VtsLafSPd-g~~LaSgs~DGsI~IWDlrtgk-------~v~~l~~h~~~VtsLafSPD-G~~LaTGS~DGs 165 (1072)
.+.+|.++|..++|+|. ...||+|+.|.+|.||.+..+. .+..+.+|...|-.++|+|. .+.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 45689999999999995 4578999999999999987543 46778899999999999995 457889999999
Q ss_pred EEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCC-CeEEEEEeCCCCEEEEE
Q 001472 166 VKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVT-GVHAITFHPDGRTLFSG 244 (1072)
Q Consensus 166 I~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~-~VtsIafSPDG~~LasG 244 (1072)
|.+|++.+|+.+..+. |...|.+++|+-||.+|++.+.|..|+|||.++++.+..-..|.+ .-..+.|-.+|.++.+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999988888 999999999999999999999999999999999999988877765 35677888899976666
Q ss_pred E----CCcEEEEEecCC---eeecccccCCCeeeeEEecCCCEEEE-EEcCCeEEEEEcCCCc
Q 001472 245 F----DDNLKVYSWEPV---ICHDSVDMGWSTLGDLCINDGKLLGC-SFYRNSVGIWVADVSH 299 (1072)
Q Consensus 245 s----dg~I~Vwd~~s~---~~~~~l~~~~s~i~~l~spDGk~LAs-gs~DGsVrIWDlds~~ 299 (1072)
. +..+-+||-+.. .....++....++-.++-+|.+++.. |-.|+.|+.|.+....
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 3 456889986543 34555677777777888888887754 5588999999886543
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-15 Score=176.07 Aligned_cols=251 Identities=19% Similarity=0.298 Sum_probs=194.2
Q ss_pred EEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCC--------CceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCe
Q 001472 10 EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGK--------PTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGV 81 (1072)
Q Consensus 10 ~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t--------~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGs 81 (1072)
++..|.+.|..+.|++.. ..|++|+.||.|.+|++.+ -+.+.++.+|.++|.|+++..++.++++|+.||+
T Consensus 289 tl~s~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCC-CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 678899999999999987 6899999999999999932 3567889999999999999999999999999999
Q ss_pred EEEEEcCCC----------eeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC--CCCeEEEE
Q 001472 82 IKLWDLEES----------KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGH--TRGINTIR 149 (1072)
Q Consensus 82 I~IWDl~tg----------k~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h--~~~VtsLa 149 (1072)
|+.|++... .....+.+|.+.|+.+++|+....|++++.||++++|+...... ..+... .+....+.
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 999965311 23456789999999999999999999999999999999866554 333222 22234455
Q ss_pred EcCCC-CEEEEEecCCeEEEEECCCCceEEEeee-------cCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEe
Q 001472 150 FTPDG-RWVVSGGFDNVVKVWDLTAGKLLHDFKF-------HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS 221 (1072)
Q Consensus 150 fSPDG-~~LaTGS~DGsI~IWDl~tgk~i~~~~~-------h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~ 221 (1072)
|-... .+.++...-+.-.++++..+..+..+.. ....+..+.++|.+.+.+++..|+.|+++|..+++.+..
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 44322 1222222333333444444444433331 113467788999999999999999999999999999999
Q ss_pred eCCCCCCeEEEEEeCCCCEEEEEE-CCcEEEEEecCCeeecc
Q 001472 222 TRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDS 262 (1072)
Q Consensus 222 ~~~h~~~VtsIafSPDG~~LasGs-dg~I~Vwd~~s~~~~~~ 262 (1072)
...|...++++++.|+|-+|++|+ ++.+.+|.++...|...
T Consensus 527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred eeeccceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence 999999999999999999999985 66799999877666543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=171.17 Aligned_cols=234 Identities=12% Similarity=0.056 Sum_probs=162.9
Q ss_pred CCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 001472 79 TGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD---TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR 155 (1072)
Q Consensus 79 DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~D---GsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~ 155 (1072)
+..|++||..... ...+..+...+.++.|+|||++|+.++.+ ..|++||+.++..... ....+....++|+|||+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCC
Confidence 3689999986554 45566778889999999999999887653 4699999988754222 21223345789999999
Q ss_pred EEEEEe-cCCeE--EEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEE-CCCeEEEEECCCC-cEEEeeCCCCCCeE
Q 001472 156 WVVSGG-FDNVV--KVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS-ADRTVKFWDLETF-ELIGSTRPEVTGVH 230 (1072)
Q Consensus 156 ~LaTGS-~DGsI--~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS-~DGtIrIWDl~tg-e~i~~~~~h~~~Vt 230 (1072)
+|++++ .+|.+ ++||+.++.. ..+..+...+...+|+|||..|+.++ .+|...||++... .....+ .+.. .
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~ 336 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--Y 336 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--C
Confidence 888765 57754 4557766654 44555666788999999999777655 5677888876432 222222 2322 4
Q ss_pred EEEEeCCCCEEEEEECCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCCeEEEEEc---CCCceeeeecCC
Q 001472 231 AITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVA---DVSHVEPYGVGA 307 (1072)
Q Consensus 231 sIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDl---ds~~l~~~~v~~ 307 (1072)
.+.|+|||++|++++.+.+.+||+..+....... .+......++|||++|+.++.+|.+.+|.+ +......+
T Consensus 337 ~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~-~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l---- 411 (429)
T PRK01742 337 SAQISADGKTLVMINGDNVVKQDLTSGSTEVLSS-TFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL---- 411 (429)
T ss_pred CccCCCCCCEEEEEcCCCEEEEECCCCCeEEecC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc----
Confidence 6789999999998777778889987765433222 223345678899999999999998888765 33322222
Q ss_pred CCCCCCCeeEEEECCCC
Q 001472 308 PEPDQSICTEVKFNPPG 324 (1072)
Q Consensus 308 ~~~~~~~ItsVaFSPDG 324 (1072)
..+.+.+..++|||.-
T Consensus 412 -~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 412 -PGSDGQVKFPAWSPYL 427 (429)
T ss_pred -cCCCCCCCCcccCCCC
Confidence 3456778889999953
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.8e-14 Score=147.26 Aligned_cols=268 Identities=17% Similarity=0.255 Sum_probs=190.6
Q ss_pred CCeEEEEEecCCCcEEEEEECCCeEEEEECCC----------CceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 001472 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGK----------PTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1072)
Q Consensus 16 g~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t----------~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IW 85 (1072)
..|..-+|+|.+ ++|+.|..+|.|.++.+.. ...+.....|.++|+.++|+ ..+|++|+ ||.|+-|
T Consensus 11 ~tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 11 NTVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEe
Confidence 356667899998 8999999999999998732 23345568999999999998 45666665 5999999
Q ss_pred EcCCCee------EEEEe--CC-----CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 001472 86 DLEESKM------VRTLT--GH-----KSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP 152 (1072)
Q Consensus 86 Dl~tgk~------i~tl~--~h-----~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSP 152 (1072)
.+..... +..+. .| --.|.++...|..+-++.++.|+.++-||+++|+....+++|.+.+.++.--.
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 8864322 11111 11 23588999999888788888999999999999999999999999999999844
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEeeec----------CCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEee
Q 001472 153 DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH----------EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGST 222 (1072)
Q Consensus 153 DG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h----------~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~ 222 (1072)
....+++|++||++++||+++++.+..+... ...|.+++. +..+|++|+. ..+.+|.++..++...+
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVF 243 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEE
Confidence 4456999999999999999999988877532 123555554 4678887764 67999999998877666
Q ss_pred CCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCCeeecccccCCCeeeeEEec--CCCEEEEEEcCCeEEEE
Q 001472 223 RPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCIN--DGKLLGCSFYRNSVGIW 293 (1072)
Q Consensus 223 ~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~sp--DGk~LAsgs~DGsVrIW 293 (1072)
.. ...+..+.|..| ..|+.|..+.+.-|.+.... ...++.....+....+. --++|..++..+.+.|+
T Consensus 244 pi-pa~v~~v~F~~d-~vl~~G~g~~v~~~~l~Gvl-~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 244 PI-PARVHLVDFVDD-CVLIGGEGNHVQSYTLNGVL-QANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ec-ccceeEeeeecc-eEEEeccccceeeeeeccEE-EEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 43 356888888754 44444545567777765322 22222222222222221 23566666777778777
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=159.51 Aligned_cols=266 Identities=18% Similarity=0.244 Sum_probs=188.8
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcC--CCCEEEEEEcCCeEEEEEcCCCeeEEEE--eCCC-CCe
Q 001472 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDS--AEVLVLAGASTGVIKLWDLEESKMVRTL--TGHK-SNC 103 (1072)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSP--dG~~LatGS~DGsI~IWDl~tgk~i~tl--~~h~-~~V 103 (1072)
..+|++...|.|+|||..+++.+..+.++...+..+.|.. ....+.+|+.||.|++||++.......+ ..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4689999999999999999999999999999999999987 5678999999999999999876544333 3343 456
Q ss_pred EEEEEcCCCCEEEEEeC----CCeEEEEECCCCeE-EEEE-ecCCCCeEEEEEcC-CCCEEEEEecCCeEEEEECCCCc-
Q 001472 104 TAVEFHPFGEFFASGCM----DTNLKIWDIRKKGC-IHTY-KGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTAGK- 175 (1072)
Q Consensus 104 tsLafSPdg~~LaSgs~----DGsI~IWDlrtgk~-v~~l-~~h~~~VtsLafSP-DG~~LaTGS~DGsI~IWDl~tgk- 175 (1072)
.|++..-.++.+++|.. +-.|.+||++..+. +..+ ..|.+.|++++|+| +.++|++|+.||.|.+||+....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 66777667778888743 57899999998765 5444 56889999999999 56799999999999999997652
Q ss_pred ---eEEEeeecCCceEEEEEcCCC-cEEEEEECCCeEEEEECCCCcEEEeeCCCCC------------CeEEEEEeCCCC
Q 001472 176 ---LLHDFKFHEGHIRSIDFHPLE-FLLATGSADRTVKFWDLETFELIGSTRPEVT------------GVHAITFHPDGR 239 (1072)
Q Consensus 176 ---~i~~~~~h~g~ItsLafSPdg-~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~------------~VtsIafSPDG~ 239 (1072)
++..+. +...|.++.|+.++ +.|.+-+..++..+|+++.+.....+..... .+.......++.
T Consensus 201 eDaL~~viN-~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 201 EDALLHVIN-HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred hhhHHHhhc-ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 233333 66779999999876 4578888899999999998875544332210 111222122334
Q ss_pred EEEE-EE-CCcEEEEEec---CCee---eccccc-CCCeeeeEEe-cCCCEEEEEEcCCeEEEEEc
Q 001472 240 TLFS-GF-DDNLKVYSWE---PVIC---HDSVDM-GWSTLGDLCI-NDGKLLGCSFYRNSVGIWVA 295 (1072)
Q Consensus 240 ~Las-Gs-dg~I~Vwd~~---s~~~---~~~l~~-~~s~i~~l~s-pDGk~LAsgs~DGsVrIWDl 295 (1072)
.++. |. .+...++-+. ++.. ...+.. +..++...++ ..+.++.+|+.||.+.+|..
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 4443 43 3444454443 2211 122222 2223333333 46789999999999999975
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-14 Score=159.64 Aligned_cols=284 Identities=15% Similarity=0.201 Sum_probs=205.3
Q ss_pred EEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECC------CCceEEEee-CCCCCeEEEEEcCCCCEEEEEEcCC
Q 001472 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIG------KPTALMSLC-GLSSPVDSVAFDSAEVLVLAGASTG 80 (1072)
Q Consensus 8 I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~------t~~~l~sl~-~hs~~ItsLafSPdG~~LatGS~DG 80 (1072)
.+.+.+|.+.|++|.|+.++ ++|++|+.|..+.+|++. ..+.+.... .|...|.|++|.-..+++++|+.+|
T Consensus 49 qKD~~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 35678999999999999997 999999999999999983 335554443 3458899999999999999999999
Q ss_pred eEEEEEcCCCeeEEEEeC--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EE--EEEecCCCCeEEEEEcCCC-
Q 001472 81 VIKLWDLEESKMVRTLTG--HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG-CI--HTYKGHTRGINTIRFTPDG- 154 (1072)
Q Consensus 81 sI~IWDl~tgk~i~tl~~--h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk-~v--~~l~~h~~~VtsLafSPDG- 154 (1072)
+|...|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.+|.|.+||++... .+ ..........+.+.|+|..
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 999999999988776652 23589999999999999999999999999998654 22 2222344567889999954
Q ss_pred CEEEEEecCCeEEEEECCCCce-EEEe---eecC---CceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEE-EeeCCCC
Q 001472 155 RWVVSGGFDNVVKVWDLTAGKL-LHDF---KFHE---GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELI-GSTRPEV 226 (1072)
Q Consensus 155 ~~LaTGS~DGsI~IWDl~tgk~-i~~~---~~h~---g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i-~~~~~h~ 226 (1072)
.+|++.+..+-+-+||.+.... +... .+.. ..-.++.|+|+|+.|.+--....-.+||+-+..+. ..+....
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~ 287 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP 287 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence 5778888889999999976532 2111 1111 12256789999998887776666778888775443 2332111
Q ss_pred ------CCeEEEEEeCCCCEEEEEECC-cEEEEEecCCe--------e---------------ecccccCCCee-eeEEe
Q 001472 227 ------TGVHAITFHPDGRTLFSGFDD-NLKVYSWEPVI--------C---------------HDSVDMGWSTL-GDLCI 275 (1072)
Q Consensus 227 ------~~VtsIafSPDG~~LasGsdg-~I~Vwd~~s~~--------~---------------~~~l~~~~s~i-~~l~s 275 (1072)
..+.+++|..|-. +++|+|. +|++|.+.... . ...+..+..+. .+-|.
T Consensus 288 ~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~ 366 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFS 366 (609)
T ss_pred Ccceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeec
Confidence 2467788876644 7788776 68999874211 0 11122223332 33455
Q ss_pred cCCCEEEEEEcCCeEEEE
Q 001472 276 NDGKLLGCSFYRNSVGIW 293 (1072)
Q Consensus 276 pDGk~LAsgs~DGsVrIW 293 (1072)
+...+|++++-.+.++||
T Consensus 367 ~H~~~l~SSGVE~~~KlW 384 (609)
T KOG4227|consen 367 QHNNLLVSSGVENSFKLW 384 (609)
T ss_pred CCcceEeccchhhheecc
Confidence 667778888888899999
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-14 Score=156.80 Aligned_cols=242 Identities=21% Similarity=0.368 Sum_probs=187.0
Q ss_pred EEecCCCCeEEEEEecCCCcEEEEEECC-------CeEEEEECCCC---------ceEEEee-CCCCCeEEEEEcCCCCE
Q 001472 10 EFVAHSANVNCISIGKKACRFLITGGDD-------QKVNLWAIGKP---------TALMSLC-GLSSPVDSVAFDSAEVL 72 (1072)
Q Consensus 10 ~L~gHsg~Vt~IafSPdg~~lLaTGs~D-------GtV~IWDl~t~---------~~l~sl~-~hs~~ItsLafSPdG~~ 72 (1072)
.|..|.+.|+.|+-+|-..++|+++..+ -.+-||.+... +.+..+. .+-+.|.|+.|.|++..
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 4778899999999999998899888663 23679988432 2233332 34468999999999999
Q ss_pred EEEEEcCCeEEEEEcCCCee-EEEEe-----CCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCC
Q 001472 73 VLAGASTGVIKLWDLEESKM-VRTLT-----GHKSNCTAVEFHP--FGEFFASGCMDTNLKIWDIRKKGCIHTYK-GHTR 143 (1072)
Q Consensus 73 LatGS~DGsI~IWDl~tgk~-i~tl~-----~h~~~VtsLafSP--dg~~LaSgs~DGsI~IWDlrtgk~v~~l~-~h~~ 143 (1072)
|++-. |..|.+|+++.+.. +..+. .+....++-+|+| +|+.+++. .|+++..||+++..+...+. +|..
T Consensus 138 lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq 215 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQ 215 (370)
T ss_pred eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcc
Confidence 98876 78899999987765 33332 2456688889998 77777775 68999999999887766654 6788
Q ss_pred CeEEEEEcCCCC-EEEEEecCCeEEEEECCCC-ceEEEeeecCCceEEEEEcCC-CcEEEEEECCCeEEEEECCCC----
Q 001472 144 GINTIRFTPDGR-WVVSGGFDNVVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETF---- 216 (1072)
Q Consensus 144 ~VtsLafSPDG~-~LaTGS~DGsI~IWDl~tg-k~i~~~~~h~g~ItsLafSPd-g~lLaTgS~DGtIrIWDl~tg---- 216 (1072)
.|..+.|+|+.+ +|++|+.||.|++||.+.. .+++++.+|...|.++.|+|. ..+|++|+.|..|.+|-...-
T Consensus 216 ~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 216 RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ 295 (370)
T ss_pred eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc
Confidence 899999999876 6788999999999999865 468889999999999999994 678899999999999965321
Q ss_pred -------------------------cEEEeeCCCCCCeEEEEEeCCCCEEEEE--ECCcEEEEE
Q 001472 217 -------------------------ELIGSTRPEVTGVHAITFHPDGRTLFSG--FDDNLKVYS 253 (1072)
Q Consensus 217 -------------------------e~i~~~~~h~~~VtsIafSPDG~~LasG--sdg~I~Vwd 253 (1072)
..+..+..|...|++++|+.-..+++++ .||.+.|=.
T Consensus 296 qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~ 359 (370)
T KOG1007|consen 296 QIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISS 359 (370)
T ss_pred ccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeec
Confidence 1233456677789999999888887764 566654433
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.5e-14 Score=148.38 Aligned_cols=231 Identities=18% Similarity=0.200 Sum_probs=177.8
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEEcCC----------CeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001472 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEE----------SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDI 129 (1072)
Q Consensus 60 ~ItsLafSPdG~~LatGS~DGsI~IWDl~t----------gk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDl 129 (1072)
.|..-+|+|.+++|++|..+|.|.++.+.+ ...+....+|.++|+.++|+ ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 355668999999999999999999998853 23455568899999999999 56677765 699999987
Q ss_pred CCCeE------EEEEe-------cCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCC
Q 001472 130 RKKGC------IHTYK-------GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE 196 (1072)
Q Consensus 130 rtgk~------v~~l~-------~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg 196 (1072)
+.... +...+ ..--.|+++...|..+-+++++.|+.++.||+++|+...++++|...|.++.--...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 54321 11111 112358899999977777777789999999999999999999999999999885555
Q ss_pred cEEEEEECCCeEEEEECCCCcEEEeeCCCCC----------CeEEEEEeCCCCEEEEEECCcEEEEEecCCeeecccccC
Q 001472 197 FLLATGSADRTVKFWDLETFELIGSTRPEVT----------GVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMG 266 (1072)
Q Consensus 197 ~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~----------~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~ 266 (1072)
..+++|+.||++++||+++++++..+..... .|-+++ -+..+|++|..-.+.+|.+....+...++..
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrsse~t~vfpip 246 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSSESTCVFPIP 246 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCCCceEEEecc
Confidence 6788999999999999999998877644321 244444 4567999998889999999998888877766
Q ss_pred CCeeeeEEecCCCEEEEEEcCCeEEEEEcCC
Q 001472 267 WSTLGDLCINDGKLLGCSFYRNSVGIWVADV 297 (1072)
Q Consensus 267 ~s~i~~l~spDGk~LAsgs~DGsVrIWDlds 297 (1072)
.....+.| +.+.+++++..+.|.-|.+..
T Consensus 247 a~v~~v~F--~~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 247 ARVHLVDF--VDDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred cceeEeee--ecceEEEeccccceeeeeecc
Confidence 55544444 334566676788999998763
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.6e-14 Score=167.09 Aligned_cols=282 Identities=21% Similarity=0.349 Sum_probs=207.5
Q ss_pred cCCCCeEEEEEecCCCcEEEEEECCCeEEEEEC-C---CCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001472 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAI-G---KPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88 (1072)
Q Consensus 13 gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl-~---t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~ 88 (1072)
.|...++|.++||.+ +++|+|..||.|.+|.- . .......+.-|...|.+++|+++|.+|++|+..|.+.+|.+.
T Consensus 203 ~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEecccc-ceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 466679999999999 99999999999999953 2 223456678899999999999999999999999999999999
Q ss_pred CCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-----------CCCCeEEEEEcCCCCEE
Q 001472 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG-----------HTRGINTIRFTPDGRWV 157 (1072)
Q Consensus 89 tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~-----------h~~~VtsLafSPDG~~L 157 (1072)
+++ .+.+..-.++|..+.++||+.+.+....|..|.+....+......+.+ ..+-.+.++++|.-+.+
T Consensus 282 T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~ 360 (792)
T KOG1963|consen 282 TGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL 360 (792)
T ss_pred CCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence 988 455666789999999999999999999999999998765544333322 23446788999966778
Q ss_pred EEEecCCeEEEEECCCCceEEEeee-----cC------CceEEEEEcCCCcEEEEEE--------CCC--eEEEEECCCC
Q 001472 158 VSGGFDNVVKVWDLTAGKLLHDFKF-----HE------GHIRSIDFHPLEFLLATGS--------ADR--TVKFWDLETF 216 (1072)
Q Consensus 158 aTGS~DGsI~IWDl~tgk~i~~~~~-----h~------g~ItsLafSPdg~lLaTgS--------~DG--tIrIWDl~tg 216 (1072)
+..+..|.|.+||+.+...+..+.. +. -.++.++.+-.|.+++++- .|| .+++|-....
T Consensus 361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence 8888999999999998877766542 12 2367777777899999873 233 4788976543
Q ss_pred c----EEE-eeCCCCCCeEEEEEeCCC---CEEEEEECCcEEEEEecC----------CeeecccccCCCe-eeeEEecC
Q 001472 217 E----LIG-STRPEVTGVHAITFHPDG---RTLFSGFDDNLKVYSWEP----------VICHDSVDMGWST-LGDLCIND 277 (1072)
Q Consensus 217 e----~i~-~~~~h~~~VtsIafSPDG---~~LasGsdg~I~Vwd~~s----------~~~~~~l~~~~s~-i~~l~spD 277 (1072)
. ... ...+|...+...+|.+.- +.+.++.++.++||-+.. ..|+..-..+..+ ....|+.|
T Consensus 441 ~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 441 SKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD 520 (792)
T ss_pred cceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC
Confidence 2 222 234566655555555432 334446788899999943 2233322223333 34455568
Q ss_pred CCEEEEEEcCCeEEEEEcCC
Q 001472 278 GKLLGCSFYRNSVGIWVADV 297 (1072)
Q Consensus 278 Gk~LAsgs~DGsVrIWDlds 297 (1072)
|.+|+++ .++.|.|||.+.
T Consensus 521 Gslla~s-~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 521 GSLLAVS-FDDTITIWDYDT 539 (792)
T ss_pred CcEEEEe-cCCEEEEecCCC
Confidence 8777766 788999999986
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-14 Score=158.09 Aligned_cols=272 Identities=16% Similarity=0.219 Sum_probs=196.4
Q ss_pred CEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeEEEE--EecCC-CCe
Q 001472 71 VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHP--FGEFFASGCMDTNLKIWDIRKKGCIHT--YKGHT-RGI 145 (1072)
Q Consensus 71 ~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSP--dg~~LaSgs~DGsI~IWDlrtgk~v~~--l~~h~-~~V 145 (1072)
..++++...|.|++||..+++.+..++++...+..+.|.. ....+.+|+.||.|++||++....... +..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688999999999999999999999999999999999976 456899999999999999998765433 33343 456
Q ss_pred EEEEEcCCCCEEEEEec----CCeEEEEECCCCce-EEE-eeecCCceEEEEEcCC-CcEEEEEECCCeEEEEECCCCc-
Q 001472 146 NTIRFTPDGRWVVSGGF----DNVVKVWDLTAGKL-LHD-FKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFE- 217 (1072)
Q Consensus 146 tsLafSPDG~~LaTGS~----DGsI~IWDl~tgk~-i~~-~~~h~g~ItsLafSPd-g~lLaTgS~DGtIrIWDl~tge- 217 (1072)
.|++..-.++.+++|.. +..|.+||++..+. +.. +..|...|+++.|+|. .++|++|+.||.|.+||+..-.
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 67777667778888763 66899999998765 444 3478999999999995 6899999999999999997542
Q ss_pred --EEEeeCCCCCCeEEEEEeCCC--CEEEEEECCcEEEEEecCCeeecccccC-------------CCeeeeEEecCCCE
Q 001472 218 --LIGSTRPEVTGVHAITFHPDG--RTLFSGFDDNLKVYSWEPVICHDSVDMG-------------WSTLGDLCINDGKL 280 (1072)
Q Consensus 218 --~i~~~~~h~~~VtsIafSPDG--~~LasGsdg~I~Vwd~~s~~~~~~l~~~-------------~s~i~~l~spDGk~ 280 (1072)
.+.....+...|.++.|..++ +.++....++..+|+|+.+.+...+... ...+...+..++..
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~ 280 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT 280 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence 233334456679999999998 8777788999999999987754433222 11122222235556
Q ss_pred EEEEEc-CCeEEEEEcC---CCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcceEEee-cC
Q 001472 281 LGCSFY-RNSVGIWVAD---VSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTS-PD 347 (1072)
Q Consensus 281 LAsgs~-DGsVrIWDld---s~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~iv-pD 347 (1072)
++.++. -|...++-+. .+....-...+.-+|..-|.++.|.-.++ ++..|...|.+..+. +|
T Consensus 281 ~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~-----~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 281 CALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKND-----VLYTGGEDGLLQAWKVED 347 (376)
T ss_pred EEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccc-----eeeccCCCceEEEEecCC
Confidence 665555 5666666442 22222222222234667788888887677 778888888655554 44
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-14 Score=167.74 Aligned_cols=225 Identities=14% Similarity=0.098 Sum_probs=159.7
Q ss_pred cCceEEEEecCCCCeEEEEEecCCCcEEEEEECC---CeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEE-cC
Q 001472 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDD---QKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGA-ST 79 (1072)
Q Consensus 4 tGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~D---GtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS-~D 79 (1072)
.|...+.+..|...|.+..|+||| +.|+.++.+ ..|++||+.++.... +.........++|+|||+.|++++ .+
T Consensus 192 dg~~~~~lt~~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~ 269 (429)
T PRK01742 192 DGFNQFIVNRSSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKD 269 (429)
T ss_pred CCCCceEeccCCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecC
Confidence 355566778888899999999999 555555432 469999998765322 222223345789999999888865 57
Q ss_pred CeEE--EEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCC
Q 001472 80 GVIK--LWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGC-MDTNLKIWDIRKK-GCIHTYKGHTRGINTIRFTPDGR 155 (1072)
Q Consensus 80 GsI~--IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs-~DGsI~IWDlrtg-k~v~~l~~h~~~VtsLafSPDG~ 155 (1072)
|.+. +||+.++.. ..+..+...+.++.|+|||+.|+.++ .+|...||++... .....+ .+.. .++.|+|||+
T Consensus 270 g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~ 345 (429)
T PRK01742 270 GVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGK 345 (429)
T ss_pred CcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCC
Confidence 7654 556666554 44566777788999999999877665 4677777765432 222223 2333 4678999999
Q ss_pred EEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEEC--CCCcEEEeeCCCCCCeEEEE
Q 001472 156 WVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL--ETFELIGSTRPEVTGVHAIT 233 (1072)
Q Consensus 156 ~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl--~tge~i~~~~~h~~~VtsIa 233 (1072)
+|++++.++ +.+||+.+++.......+ ....+.|+|+|.+|++++.+|.+.+|++ .++..+..+..+.+.+..++
T Consensus 346 ~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ 422 (429)
T PRK01742 346 TLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPA 422 (429)
T ss_pred EEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcc
Confidence 998887765 666999988765333222 2356789999999999999998888875 35777788877777888999
Q ss_pred EeCC
Q 001472 234 FHPD 237 (1072)
Q Consensus 234 fSPD 237 (1072)
|+|-
T Consensus 423 wsp~ 426 (429)
T PRK01742 423 WSPY 426 (429)
T ss_pred cCCC
Confidence 9984
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=165.28 Aligned_cols=203 Identities=18% Similarity=0.295 Sum_probs=169.6
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEE
Q 001472 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEF 108 (1072)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLaf 108 (1072)
..|+.++.||.+.|.+- .++.-..+..|.+.+.+-.|+|+|.-|++++.||.|++|. ++|-+..++-....+|+|++|
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 56888899999999873 4555566788999999999999999999999999999998 456555555567788999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceE
Q 001472 109 HPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIR 188 (1072)
Q Consensus 109 SPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~It 188 (1072)
.|+.+.++.+ ..|+++|=-+.-...+..++.|.+-|.++.|++..+++++|++|...++||. .|..+..-..|..+|+
T Consensus 154 ~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~IT 231 (737)
T KOG1524|consen 154 APNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAIT 231 (737)
T ss_pred CCCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhcccee
Confidence 9998877765 4677888888877778889999999999999999999999999999999996 5788888888999999
Q ss_pred EEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCc
Q 001472 189 SIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN 248 (1072)
Q Consensus 189 sLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~ 248 (1072)
+++|+|+ ..++.++. .++++ ..+..+.|..++|++||..+++|...+
T Consensus 232 Sva~npd-~~~~v~S~-nt~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 232 SVAFNPE-KDYLLWSY-NTARF-----------SSPRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred eeeeccc-cceeeeee-eeeee-----------cCCCccceEEEEEcCCCceeeccccCc
Confidence 9999999 66666665 34442 223456799999999999999987665
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.5e-14 Score=167.43 Aligned_cols=243 Identities=18% Similarity=0.247 Sum_probs=183.4
Q ss_pred CCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCce--EE----EeeCCCCCeEEEEEcCCC--CEEEEEEcCCeEEEE
Q 001472 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTA--LM----SLCGLSSPVDSVAFDSAE--VLVLAGASTGVIKLW 85 (1072)
Q Consensus 14 Hsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~--l~----sl~~hs~~ItsLafSPdG--~~LatGS~DGsI~IW 85 (1072)
-...|.|++|+|..+.+|+.|..+|.|.+||+..+.. .. ....|..++..+.|-.+. .-|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 3478999999999999999999999999999976654 22 235688999999997644 449999999999999
Q ss_pred EcCCCee------EEEEe------CCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCC---Ce-----EEEEEecCCCC
Q 001472 86 DLEESKM------VRTLT------GHKSNCTAVEFHPF-GEFFASGCMDTNLKIWDIRK---KG-----CIHTYKGHTRG 144 (1072)
Q Consensus 86 Dl~tgk~------i~tl~------~h~~~VtsLafSPd-g~~LaSgs~DGsI~IWDlrt---gk-----~v~~l~~h~~~ 144 (1072)
+++.-.. ..... .....+++++|.+. -..|++|+.+|.|+--+-.. +. ....+..|.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 8764221 11111 12345889999884 45799999999988744222 11 12345568899
Q ss_pred eEEEEEcCCCCEEEEEecCCeEEEEECC-CCceEEEeeecCCceEEEEEcCCC-cEEEEEECCCeEEEEECCCC--cEEE
Q 001472 145 INTIRFTPDGRWVVSGGFDNVVKVWDLT-AGKLLHDFKFHEGHIRSIDFHPLE-FLLATGSADRTVKFWDLETF--ELIG 220 (1072)
Q Consensus 145 VtsLafSPDG~~LaTGS~DGsI~IWDl~-tgk~i~~~~~h~g~ItsLafSPdg-~lLaTgS~DGtIrIWDl~tg--e~i~ 220 (1072)
|+++.++|=+..++..+.|.+++||... ...++..+..+...+++++|+|.. ..++++..||.|.+||+... .++.
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 9999999966544444449999999987 667777777777889999999965 57778888999999999753 3455
Q ss_pred eeCCCCCCeEEEEEeCCCCEEEEEEC-CcEEEEEecC
Q 001472 221 STRPEVTGVHAITFHPDGRTLFSGFD-DNLKVYSWEP 256 (1072)
Q Consensus 221 ~~~~h~~~VtsIafSPDG~~LasGsd-g~I~Vwd~~s 256 (1072)
....+....+.+.|++.|+.|++|.. |.+.+|++..
T Consensus 481 s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 481 SQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 55445566788899999999999965 4589998853
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.2e-14 Score=156.56 Aligned_cols=249 Identities=20% Similarity=0.360 Sum_probs=182.4
Q ss_pred EEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECC--------C--------CceEEEeeCCCCCeEEEEEcCCCC
Q 001472 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIG--------K--------PTALMSLCGLSSPVDSVAFDSAEV 71 (1072)
Q Consensus 8 I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~--------t--------~~~l~sl~~hs~~ItsLafSPdG~ 71 (1072)
+..|..|...|+++.|+|+| .+||+|+.+|.|.||... + ......+.+|...|+.++|+|++.
T Consensus 58 ~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~ 136 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN 136 (434)
T ss_pred eecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc
Confidence 45688999999999999999 899999999999999765 2 123445678999999999999999
Q ss_pred EEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe------------
Q 001472 72 LVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK------------ 139 (1072)
Q Consensus 72 ~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~------------ 139 (1072)
++++++.|..+++||+..|.....+..|...+..++|.|-++++++-+.|...+.+.+.....+....
T Consensus 137 ~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~ 216 (434)
T KOG1009|consen 137 FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNER 216 (434)
T ss_pred eeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCC
Confidence 99999999999999999999999999999999999999999999998888877777665433222111
Q ss_pred -------cCC----CCeEEEEEcCCCCEEEEEec----CCe-----EEEEECCC-CceEEEeeecCCceEEEEEcC----
Q 001472 140 -------GHT----RGINTIRFTPDGRWVVSGGF----DNV-----VKVWDLTA-GKLLHDFKFHEGHIRSIDFHP---- 194 (1072)
Q Consensus 140 -------~h~----~~VtsLafSPDG~~LaTGS~----DGs-----I~IWDl~t-gk~i~~~~~h~g~ItsLafSP---- 194 (1072)
.|. .....++|+|+|.+|++... ++. .++|+-.. .++...+.+...+...+.|+|
T Consensus 217 e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~e 296 (434)
T KOG1009|consen 217 EGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYE 296 (434)
T ss_pred CcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEE
Confidence 011 23567899999999887541 222 23443221 122333333333333444433
Q ss_pred --------------CCcEEEEEECCCeEEEEECCCCcEEEee-CCCCCCeEEEEEeCCCCEEEEEE-CCcEEEEEecCCe
Q 001472 195 --------------LEFLLATGSADRTVKFWDLETFELIGST-RPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVI 258 (1072)
Q Consensus 195 --------------dg~lLaTgS~DGtIrIWDl~tge~i~~~-~~h~~~VtsIafSPDG~~LasGs-dg~I~Vwd~~s~~ 258 (1072)
.+-.+++++. ..|++||..+..++... ..|...|+.++|++||.+|+.++ ||.+.+..+++..
T Consensus 297 lrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 297 LRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred eccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 3345666665 58999999987776654 34677899999999999998865 5555555555443
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=153.25 Aligned_cols=282 Identities=15% Similarity=0.222 Sum_probs=198.6
Q ss_pred EEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEee-CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 001472 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLC-GLSSPVDSVAFDSAEVLVLAGASTGVIKLWD 86 (1072)
Q Consensus 8 I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~-~hs~~ItsLafSPdG~~LatGS~DGsI~IWD 86 (1072)
.-.|.+|.+.|+|+.|..++ +|.+|..-|.|++|++.+......+. .+...|+.+.--|+ ..|.+-+.|+.+.+|+
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~--rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANE--RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred eeEeccccchheehhhccch--hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 44567999999999999887 59999999999999999888877777 56778888888887 5678888999999999
Q ss_pred cCCCeeEEEEeCCCCCeEEEEEcC-----CCC----EEEEEeCCC-eEEEEECCCCeEEEEEe----cCCCCeEEEEEcC
Q 001472 87 LEESKMVRTLTGHKSNCTAVEFHP-----FGE----FFASGCMDT-NLKIWDIRKKGCIHTYK----GHTRGINTIRFTP 152 (1072)
Q Consensus 87 l~tgk~i~tl~~h~~~VtsLafSP-----dg~----~LaSgs~DG-sI~IWDlrtgk~v~~l~----~h~~~VtsLafSP 152 (1072)
+.-+..+.. |.-.+.++-|.+ +++ .++.-+... .+.+-|......+.... ...+.+.|..|..
T Consensus 84 ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~ 160 (323)
T KOG0322|consen 84 IAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH 160 (323)
T ss_pred ccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc
Confidence 987554432 222333444432 221 111111110 02222221111122111 2334566666543
Q ss_pred -CCC--EEEEEecCCeEEEEECCCCceE----------EEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCC--c
Q 001472 153 -DGR--WVVSGGFDNVVKVWDLTAGKLL----------HDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF--E 217 (1072)
Q Consensus 153 -DG~--~LaTGS~DGsI~IWDl~tgk~i----------~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tg--e 217 (1072)
++. ++++|.++|.+.+||+.++..+ .....|..++.++.|.+.-..=++|+.+..+..|++... .
T Consensus 161 ~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 161 ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS 240 (323)
T ss_pred cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc
Confidence 333 5677889999999999998443 334468899999999886666677888888999988642 2
Q ss_pred --EEEeeCCCCCCeEEEEEeCCCCEEEE-EECCcEEEEEecCCeeecccccCCCee-eeEEecCCCEEEEEEcCCeEEEE
Q 001472 218 --LIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWEPVICHDSVDMGWSTL-GDLCINDGKLLGCSFYRNSVGIW 293 (1072)
Q Consensus 218 --~i~~~~~h~~~VtsIafSPDG~~Las-Gsdg~I~Vwd~~s~~~~~~l~~~~s~i-~~l~spDGk~LAsgs~DGsVrIW 293 (1072)
.-..+.....++..+.+-||++.+++ |.|+.|+||.|++......+..+...+ ...|++|..++|.++.|+.|.+|
T Consensus 241 lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLW 320 (323)
T KOG0322|consen 241 LQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLW 320 (323)
T ss_pred ccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEee
Confidence 22233344567899999999999998 689999999999999888877665544 45666888999999999999999
Q ss_pred Ec
Q 001472 294 VA 295 (1072)
Q Consensus 294 Dl 295 (1072)
++
T Consensus 321 kL 322 (323)
T KOG0322|consen 321 KL 322 (323)
T ss_pred ec
Confidence 75
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-13 Score=168.44 Aligned_cols=252 Identities=17% Similarity=0.263 Sum_probs=181.5
Q ss_pred cCceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCC-------ceEEEeeCCCCCeEEEEEcCCCCEEEEE
Q 001472 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP-------TALMSLCGLSSPVDSVAFDSAEVLVLAG 76 (1072)
Q Consensus 4 tGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~-------~~l~sl~~hs~~ItsLafSPdG~~LatG 76 (1072)
+|..+.+++.|+..|..++.++....++++|+.||+|++|+..+- ....++......+.++.+.++++.+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 688999999999999999998887689999999999999998431 2223344456789999999999999999
Q ss_pred EcCCeEEEEEcCCC--e-----eEEEEeCCC-C-CeEEEEEcC-CCC-EEEEEeCCCeEEEEECCCCeEEEEEe--cCCC
Q 001472 77 ASTGVIKLWDLEES--K-----MVRTLTGHK-S-NCTAVEFHP-FGE-FFASGCMDTNLKIWDIRKKGCIHTYK--GHTR 143 (1072)
Q Consensus 77 S~DGsI~IWDl~tg--k-----~i~tl~~h~-~-~VtsLafSP-dg~-~LaSgs~DGsI~IWDlrtgk~v~~l~--~h~~ 143 (1072)
+.||.|.+.+++-. . ..+..+.+. + .|..-+|.. .+. .++.+..-+.|..||++.....+.++ ...+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 99999999998752 1 122222222 2 233334433 233 67888888999999998776555543 2346
Q ss_pred CeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEee-ecCCceEEEEEcCCC---cEEEEEE--CCCeEEEEECCCCc
Q 001472 144 GINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK-FHEGHIRSIDFHPLE---FLLATGS--ADRTVKFWDLETFE 217 (1072)
Q Consensus 144 ~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~-~h~g~ItsLafSPdg---~lLaTgS--~DGtIrIWDl~tge 217 (1072)
.|++++.+|.+.|+++|...|.+.+||++-+.++..+. .+..+|..++.+|-. ...++++ ..+.|.+|++.+|.
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 79999999999999999999999999999998887776 345678888877742 3444444 47789999999886
Q ss_pred EEEeeCCC--------------------CCCeEEEEEeCCCCEEEEEECCcEEEEEec
Q 001472 218 LIGSTRPE--------------------VTGVHAITFHPDGRTLFSGFDDNLKVYSWE 255 (1072)
Q Consensus 218 ~i~~~~~h--------------------~~~VtsIafSPDG~~LasGsdg~I~Vwd~~ 255 (1072)
....+... ..++.+..-.+.|-.+..|+|..|+.||..
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 54443322 011222222334444445678889999964
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-13 Score=148.53 Aligned_cols=294 Identities=18% Similarity=0.273 Sum_probs=209.4
Q ss_pred CCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEE-EEcCCeEEEEEcCCCeeEE
Q 001472 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLA-GASTGVIKLWDLEESKMVR 94 (1072)
Q Consensus 16 g~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~Lat-GS~DGsI~IWDl~tgk~i~ 94 (1072)
+.|.-|.|..|...+|.....|+.|.+|++...+-...+.....++..+.|||+|+.|+. ...+-.|.+|.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 567778899888677777889999999999999999999988999999999999976555 4457889999998766543
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEeCCCe---EEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEEC
Q 001472 95 TLTGHKSNCTAVEFHPFGEFFASGCMDTN---LKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171 (1072)
Q Consensus 95 tl~~h~~~VtsLafSPdg~~LaSgs~DGs---I~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl 171 (1072)
+......+..++|+|||++.+.++.... +.|..-.....+..++...-..+.+.|+|||.+|++ ||.
T Consensus 129 -~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~ 198 (447)
T KOG4497|consen 129 -LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDN 198 (447)
T ss_pred -ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecc
Confidence 3434556788999999999888865422 222222223344555555666789999999988775 332
Q ss_pred CCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEE--------------------------------
Q 001472 172 TAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELI-------------------------------- 219 (1072)
Q Consensus 172 ~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i-------------------------------- 219 (1072)
--.-.+..+. ..-.+..+.|+|.+.+|++|+.|+.+++.+--+.+..
T Consensus 199 ~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cL 277 (447)
T KOG4497|consen 199 VLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCL 277 (447)
T ss_pred hhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccc
Confidence 2111111222 1234778999999999999999998887542211100
Q ss_pred ----------------------------Eee------CCCCCCeEEEEEeCCCCEEEEEECC---cEEEEEecCCeeecc
Q 001472 220 ----------------------------GST------RPEVTGVHAITFHPDGRTLFSGFDD---NLKVYSWEPVICHDS 262 (1072)
Q Consensus 220 ----------------------------~~~------~~h~~~VtsIafSPDG~~LasGsdg---~I~Vwd~~s~~~~~~ 262 (1072)
..+ .....++.-++|++|..|+++-.|+ .+.+||++..+.+..
T Consensus 278 sf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~av 357 (447)
T KOG4497|consen 278 SFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAV 357 (447)
T ss_pred ccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhh
Confidence 001 1112246789999999999997665 389999998888877
Q ss_pred cccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCC
Q 001472 263 VDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 263 l~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs 325 (1072)
+.....+....|.|....|+.+.....+++|.... ++.++.| ...-.|..++|.-+|.
T Consensus 358 LiQk~piraf~WdP~~prL~vctg~srLY~W~psg----~~~V~vP-~~GF~i~~l~W~~~g~ 415 (447)
T KOG4497|consen 358 LIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG----PRVVGVP-KKGFNIQKLQWLQPGE 415 (447)
T ss_pred hhhccceeEEEeCCCCceEEEEcCCceEEEEcCCC----ceEEecC-CCCceeeeEEecCCCc
Confidence 76666666666777776777777778899997654 3444442 3347899999999999
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.5e-14 Score=151.84 Aligned_cols=240 Identities=15% Similarity=0.212 Sum_probs=193.1
Q ss_pred EEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCC---ceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001472 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP---TALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1072)
Q Consensus 8 I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~---~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~I 84 (1072)
++.|+--..+|+|.+|++|+ ..+|++.....|.||..... +..+++..|...|++++|+|..+.|++++.|..-++
T Consensus 3 ~~~~~~~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayV 81 (361)
T KOG1523|consen 3 VVVFHRLLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYV 81 (361)
T ss_pred eEEeeeccCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccc
Confidence 44565567899999999998 88999999999999987544 467888999999999999999999999999999999
Q ss_pred EEc-CCC--eeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE----EEecCCCCeEEEEEcCCCCEE
Q 001472 85 WDL-EES--KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH----TYKGHTRGINTIRFTPDGRWV 157 (1072)
Q Consensus 85 WDl-~tg--k~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~----~l~~h~~~VtsLafSPDG~~L 157 (1072)
|.. .++ ++...+..++...+++.|+|.++.|++|+....|.||-++...--. .-+.+...|.++.|+|++-+|
T Consensus 82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl 161 (361)
T KOG1523|consen 82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL 161 (361)
T ss_pred cccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence 998 333 3444555688999999999999999999999999999887554322 223355678999999999999
Q ss_pred EEEecCCeEEEEECC------------------CCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCc-E
Q 001472 158 VSGGFDNVVKVWDLT------------------AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE-L 218 (1072)
Q Consensus 158 aTGS~DGsI~IWDl~------------------tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge-~ 218 (1072)
++|+.|+..++|..- -|+++.++....+.+..+.|+|+|+.|+-.+.|+.+.+-|..... .
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 999999999998531 133455555567889999999999999999999999999987654 3
Q ss_pred EEeeCCCCCCeEEEEEeCCCCEEEEEECCc
Q 001472 219 IGSTRPEVTGVHAITFHPDGRTLFSGFDDN 248 (1072)
Q Consensus 219 i~~~~~h~~~VtsIafSPDG~~LasGsdg~ 248 (1072)
+.......-+..++.|-.+...+++|.+-.
T Consensus 242 v~~~~~~~lP~ls~~~ise~~vv~ag~~c~ 271 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWISENSVVAAGYDCG 271 (361)
T ss_pred ccchhhccCCceeeEeecCCceeecCCCCC
Confidence 444444446788888888777777776644
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-12 Score=153.85 Aligned_cols=233 Identities=12% Similarity=0.045 Sum_probs=158.5
Q ss_pred CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 001472 80 GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD---TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW 156 (1072)
Q Consensus 80 GsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~D---GsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~ 156 (1072)
..|.+||...+ ..+.+..+...+.+..|+|||+.|+.++.+ ..|++||+.++.... +....+...++.|+|||+.
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 36999998644 344555677789999999999998887643 469999998876543 3333444568899999997
Q ss_pred EEE-EecCC--eEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEEC-CC--eEEEEECCCCcEEEeeCCCCCCeE
Q 001472 157 VVS-GGFDN--VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA-DR--TVKFWDLETFELIGSTRPEVTGVH 230 (1072)
Q Consensus 157 LaT-GS~DG--sI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~-DG--tIrIWDl~tge~i~~~~~h~~~Vt 230 (1072)
|+. .+.+| .|++||+.+++.. .+..+.+....++|+|||+.|+.++. +| .|+++|+.+++... +........
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 764 44555 6999999888754 34445555577899999998887764 44 47777877665432 222223455
Q ss_pred EEEEeCCCCEEEEEEC-C---cEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcC---CeEEEEEcCCCceeee
Q 001472 231 AITFHPDGRTLFSGFD-D---NLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYR---NSVGIWVADVSHVEPY 303 (1072)
Q Consensus 231 sIafSPDG~~LasGsd-g---~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~D---GsVrIWDlds~~l~~~ 303 (1072)
.++|+|||++|+.... + .|.+|++..+....... +.......+++||++|+..+.+ +.|.+|+.+......+
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l 418 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRL 418 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEc
Confidence 7899999999987542 2 38888887665543322 2233456788999988776653 3577777765443333
Q ss_pred ecCCCCCCCCCeeEEEECC
Q 001472 304 GVGAPEPDQSICTEVKFNP 322 (1072)
Q Consensus 304 ~v~~~~~~~~~ItsVaFSP 322 (1072)
. .+.+.+..++|||
T Consensus 419 ~-----~~~g~~~~p~wsp 432 (433)
T PRK04922 419 V-----SADGEVREPAWSP 432 (433)
T ss_pred c-----cCCCCCCCCccCC
Confidence 2 2345677788988
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-13 Score=148.58 Aligned_cols=276 Identities=15% Similarity=0.246 Sum_probs=187.3
Q ss_pred CCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEee-CCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEEcCC----
Q 001472 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLC-GLSSPVDSVAFDSAE-VLVLAGASTGVIKLWDLEE---- 89 (1072)
Q Consensus 16 g~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~-~hs~~ItsLafSPdG-~~LatGS~DGsI~IWDl~t---- 89 (1072)
..+..++|++.- ..+|++..|..|++|+-.. .....++ .....|+|++|-|.+ ..|++|+..| |.||....
T Consensus 99 ~dlr~~aWhqH~-~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQHI-IAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeechhh-hhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 467889999975 6688899999999999765 3333343 345679999999954 5788887755 99997642
Q ss_pred Cee----------EEEEeCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 001472 90 SKM----------VRTLTGHKSNCTAVEFHPFGEFFASGCM-DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVV 158 (1072)
Q Consensus 90 gk~----------i~tl~~h~~~VtsLafSPdg~~LaSgs~-DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~La 158 (1072)
+.. +....+| ..|+++.|.+||..+++++. |..|.|||..++..+.......+.+.-+.|+|||.+|+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 111 1112233 67999999999999998875 57899999999887766544566789999999999999
Q ss_pred EEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCc---------------EEEee-
Q 001472 159 SGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE---------------LIGST- 222 (1072)
Q Consensus 159 TGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge---------------~i~~~- 222 (1072)
++.-|+..++|...............+.|...+|+|+|.+|+.... |.-++|.+.-.. .+..+
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred EecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 9999999999965443333333345668999999999987766654 444555443100 01110
Q ss_pred --------CCCCCCeEEEEEeCCCCEEEEEECCc---------EEEEEecCCeeeccc----ccCCCeeeeEEe---cCC
Q 001472 223 --------RPEVTGVHAITFHPDGRTLFSGFDDN---------LKVYSWEPVICHDSV----DMGWSTLGDLCI---NDG 278 (1072)
Q Consensus 223 --------~~h~~~VtsIafSPDG~~LasGsdg~---------I~Vwd~~s~~~~~~l----~~~~s~i~~l~s---pDG 278 (1072)
....+++.+++|+|.|.+|++...++ |.+|+.......... ..+..+....|. .+|
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 11245789999999999999976544 445554432222111 111112222222 467
Q ss_pred CEEEEEEcCCeEEEEEcC
Q 001472 279 KLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 279 k~LAsgs~DGsVrIWDld 296 (1072)
.+|..+..-|.+.-|++.
T Consensus 414 ~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cEEEEEeccCceEeeeeE
Confidence 788888888888877664
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.2e-13 Score=155.52 Aligned_cols=233 Identities=12% Similarity=0.045 Sum_probs=161.9
Q ss_pred eEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 001472 81 VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM---DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWV 157 (1072)
Q Consensus 81 sI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~---DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~L 157 (1072)
.|.+||...... +.+..+...+.+.+|+|||+.|+..+. +..|++||+.+++.... ....+.+..+.|+|||+.|
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEE
Confidence 799999876544 334446778999999999998887543 45799999988764332 2233345678999999988
Q ss_pred EEE-ecCC--eEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECC-C--eEEEEECCCCcEEEeeCCCCCCeEE
Q 001472 158 VSG-GFDN--VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSAD-R--TVKFWDLETFELIGSTRPEVTGVHA 231 (1072)
Q Consensus 158 aTG-S~DG--sI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~D-G--tIrIWDl~tge~i~~~~~h~~~Vts 231 (1072)
+.. +.+| .|++||+.+++...... +...+....|+|||+.|+..+.+ | .|+++|+.+++.. .+.........
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~ 335 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD 335 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccC
Confidence 765 3344 59999998887654433 44567889999999988777654 3 4666677766543 33333344567
Q ss_pred EEEeCCCCEEEEEEC-C---cEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCCe---EEEEEcCCCceeeee
Q 001472 232 ITFHPDGRTLFSGFD-D---NLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNS---VGIWVADVSHVEPYG 304 (1072)
Q Consensus 232 IafSPDG~~LasGsd-g---~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGs---VrIWDlds~~l~~~~ 304 (1072)
..|+|||++|+.... + .+.+|+++.+...... ..+......|+|||++|+.++.++. +.+|+++......+
T Consensus 336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt-~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l- 413 (429)
T PRK03629 336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT-DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL- 413 (429)
T ss_pred EEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC-CCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEEC-
Confidence 899999999987542 2 3778888776544322 2233345678899999999887754 67778776555444
Q ss_pred cCCCCCCCCCeeEEEECCC
Q 001472 305 VGAPEPDQSICTEVKFNPP 323 (1072)
Q Consensus 305 v~~~~~~~~~ItsVaFSPD 323 (1072)
..+.+.+..++|||.
T Consensus 414 ----~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 414 ----PATDGQVKFPAWSPY 428 (429)
T ss_pred ----ccCCCCcCCcccCCC
Confidence 245677888999983
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-13 Score=148.70 Aligned_cols=237 Identities=17% Similarity=0.287 Sum_probs=181.6
Q ss_pred cCCCCeEEEEEecCCC----cEEEEEECCCeEEEEECCCC--ceE--EE-----eeCCCCCeEEEEEcC-CCCEEEEEEc
Q 001472 13 AHSANVNCISIGKKAC----RFLITGGDDQKVNLWAIGKP--TAL--MS-----LCGLSSPVDSVAFDS-AEVLVLAGAS 78 (1072)
Q Consensus 13 gHsg~Vt~IafSPdg~----~lLaTGs~DGtV~IWDl~t~--~~l--~s-----l~~hs~~ItsLafSP-dG~~LatGS~ 78 (1072)
.|.-+++.+.|.|+.. .+||+++ ..++||.+... ... .. -..+..++++..|+. +-++|.+.+-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 6888999999999862 4666654 37999998632 111 11 134567899999987 6789999999
Q ss_pred CCeEEEEEcCCCe---eEEEEeCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEE-e--cCCCCeEEEEEc
Q 001472 79 TGVIKLWDLEESK---MVRTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKKGCIHTY-K--GHTRGINTIRFT 151 (1072)
Q Consensus 79 DGsI~IWDl~tgk---~i~tl~~h~~~VtsLafSPdg~-~LaSgs~DGsI~IWDlrtgk~v~~l-~--~h~~~VtsLafS 151 (1072)
|-+..|||++++. ....+-.|...|..++|...+. .|++.+.||.|++||++..+.-..+ . ....+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 9999999999863 3455678999999999998654 8899999999999999976643332 2 224578889999
Q ss_pred C-CCCEEEEEecC-CeEEEEECCCC-ceEEEeeecCCceEEEEEcCC-CcEEEEEECCCeEEEEECCCCcE------EEe
Q 001472 152 P-DGRWVVSGGFD-NVVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFEL------IGS 221 (1072)
Q Consensus 152 P-DG~~LaTGS~D-GsI~IWDl~tg-k~i~~~~~h~g~ItsLafSPd-g~lLaTgS~DGtIrIWDl~tge~------i~~ 221 (1072)
+ |-+++++-..| ..|.|.|++.. ..+..+..|.+.|..++|.|. ...|++++.|....+||+...-. +..
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 8 55677775544 57999999875 578889999999999999996 57899999999999999975321 222
Q ss_pred eCCCCCCeEEEEEeC-CCCEEEEEECCcEEEE
Q 001472 222 TRPEVTGVHAITFHP-DGRTLFSGFDDNLKVY 252 (1072)
Q Consensus 222 ~~~h~~~VtsIafSP-DG~~LasGsdg~I~Vw 252 (1072)
+. ..+.|..+.|++ .+.+++.+.++.+.+.
T Consensus 332 y~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 332 YT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 22 456799999995 5788888888876553
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.7e-12 Score=145.72 Aligned_cols=319 Identities=13% Similarity=0.051 Sum_probs=203.6
Q ss_pred cEE-EEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEE
Q 001472 29 RFL-ITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVE 107 (1072)
Q Consensus 29 ~lL-aTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLa 107 (1072)
+++ ++-..+|.|.+.|..+.+.+..+.........+.|++||+++++++.||.|.+||+.+++.+..+... ....+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEE
Confidence 344 45567899999999999999998865544456789999999999999999999999999999998854 4467899
Q ss_pred EcCCCCEEEEEe-CCCeEEEEECCCCeEEEEEecC-------CCCeEEEEEcCCCCEEEEE-ecCCeEEEEECCCCceEE
Q 001472 108 FHPFGEFFASGC-MDTNLKIWDIRKKGCIHTYKGH-------TRGINTIRFTPDGRWVVSG-GFDNVVKVWDLTAGKLLH 178 (1072)
Q Consensus 108 fSPdg~~LaSgs-~DGsI~IWDlrtgk~v~~l~~h-------~~~VtsLafSPDG~~LaTG-S~DGsI~IWDl~tgk~i~ 178 (1072)
+++||+++++++ ..+.+.++|.++.+.+..+... ...+..+..++.+..++.. -..+.|.+.|....+.+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 999999998876 4799999999999988877532 2357788888888855554 445889899987765432
Q ss_pred -EeeecCCceEEEEEcCCCcEEEEE-ECCCeEEEEECCCCcEEEeeCC----CCCCeEEE-------EEe--CCCCEEE-
Q 001472 179 -DFKFHEGHIRSIDFHPLEFLLATG-SADRTVKFWDLETFELIGSTRP----EVTGVHAI-------TFH--PDGRTLF- 242 (1072)
Q Consensus 179 -~~~~h~g~ItsLafSPdg~lLaTg-S~DGtIrIWDl~tge~i~~~~~----h~~~VtsI-------afS--PDG~~La- 242 (1072)
.............|+|++++++++ ..+..|-++|..+++.+..+.. |..+...+ .|. ..+.+.+
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~ 244 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIP 244 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEE
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecc
Confidence 222234567889999999987765 4567899999999887765432 22233322 121 1222221
Q ss_pred EEECCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEE----EcCCeEEEEEcCCCcee-eeecCCCCCCCCCeeE
Q 001472 243 SGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCS----FYRNSVGIWVADVSHVE-PYGVGAPEPDQSICTE 317 (1072)
Q Consensus 243 sGsdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsg----s~DGsVrIWDlds~~l~-~~~v~~~~~~~~~Its 317 (1072)
.-+.+.+.+|+....+....+......+....+|+++++.+. ...+.|.++|...-... .+. ......+..
T Consensus 245 ~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~----~~~~~~~~h 320 (369)
T PF02239_consen 245 LIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT----PGPGKRVVH 320 (369)
T ss_dssp EEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH----HHHT--EEE
T ss_pred cccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe----ccCCCcEec
Confidence 223344556777777777777776666777778999999988 34589999998765432 222 112234889
Q ss_pred EEECCCCCccceEEEEEeccCcceEEeecCCcccceEEEe
Q 001472 318 VKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIY 357 (1072)
Q Consensus 318 VaFSPDGs~lLa~VlaiG~stG~~r~ivpD~et~eI~~i~ 357 (1072)
+.|++||+++.+. .....| .+.+.|..+.+++...
T Consensus 321 ~ef~~dG~~v~vS---~~~~~~--~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 321 MEFNPDGKEVWVS---VWDGNG--AIVVYDAKTLKEKKRI 355 (369)
T ss_dssp EEE-TTSSEEEEE---EE--TT--EEEEEETTTTEEEEEE
T ss_pred cEECCCCCEEEEE---EecCCC--EEEEEECCCcEEEEEE
Confidence 9999999964333 333333 5777777666665543
|
... |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.2e-12 Score=144.89 Aligned_cols=296 Identities=17% Similarity=0.192 Sum_probs=195.2
Q ss_pred ccCceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEE-cCCe
Q 001472 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGA-STGV 81 (1072)
Q Consensus 3 ktGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS-~DGs 81 (1072)
++.+.+..+..+...-..+.|+||| +++++++.||.|.+||+.+.+.+..+... ....+++++++|+++++++ ..+.
T Consensus 24 ~t~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~ 101 (369)
T PF02239_consen 24 ATNKVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGT 101 (369)
T ss_dssp TT-SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTE
T ss_pred CCCeEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCc
Confidence 3566788887664443457899999 78888899999999999999999888754 4567899999999999876 4799
Q ss_pred EEEEEcCCCeeEEEEeCC-------CCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeEE--EEEecCCCCeEEEEEc
Q 001472 82 IKLWDLEESKMVRTLTGH-------KSNCTAVEFHPFGEFFASGCM-DTNLKIWDIRKKGCI--HTYKGHTRGINTIRFT 151 (1072)
Q Consensus 82 I~IWDl~tgk~i~tl~~h-------~~~VtsLafSPdg~~LaSgs~-DGsI~IWDlrtgk~v--~~l~~h~~~VtsLafS 151 (1072)
+.++|.++.+.++.+... ...+..+..+|....+++.-. .+.|.+.|....+.+ ..+. .........|+
T Consensus 102 v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~d 180 (369)
T PF02239_consen 102 VSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFD 180 (369)
T ss_dssp EEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-
T ss_pred eeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-ccccccccccC
Confidence 999999999998877532 345778888888886666555 488988898765433 3333 44567899999
Q ss_pred CCCCEEEEE-ecCCeEEEEECCCCceEEEeee----cCCceEEEEEcCC----------CcEEEEEECCCeEEEEECCCC
Q 001472 152 PDGRWVVSG-GFDNVVKVWDLTAGKLLHDFKF----HEGHIRSIDFHPL----------EFLLATGSADRTVKFWDLETF 216 (1072)
Q Consensus 152 PDG~~LaTG-S~DGsI~IWDl~tgk~i~~~~~----h~g~ItsLafSPd----------g~lLaTgS~DGtIrIWDl~tg 216 (1072)
|+++|++.+ .....|.++|..+++.+..+.. |.+....+ .+|. +...++.-....+.+||...+
T Consensus 181 pdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w 259 (369)
T PF02239_consen 181 PDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW 259 (369)
T ss_dssp TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT
T ss_pred cccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcC
Confidence 999988765 4567899999999988776542 33333322 1222 222212222235667899999
Q ss_pred cEEEeeCCCCCCeEEEEEeCCCCEEEEE---E--CCcEEEEEecCCeeecccccCCC--eeeeEEecCCCEEEEEEcC--
Q 001472 217 ELIGSTRPEVTGVHAITFHPDGRTLFSG---F--DDNLKVYSWEPVICHDSVDMGWS--TLGDLCINDGKLLGCSFYR-- 287 (1072)
Q Consensus 217 e~i~~~~~h~~~VtsIafSPDG~~LasG---s--dg~I~Vwd~~s~~~~~~l~~~~s--~i~~l~spDGk~LAsgs~D-- 287 (1072)
+.+..+....++ .-+..+|+++++.+. . .+.|.++|.++......+..... ....-+.+||+++..+.++
T Consensus 260 kvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 260 KVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp SEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred eEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence 999999887666 788889999999987 2 24599999999877666654333 7888899999977665544
Q ss_pred CeEEEEEcCCCceeee
Q 001472 288 NSVGIWVADVSHVEPY 303 (1072)
Q Consensus 288 GsVrIWDlds~~l~~~ 303 (1072)
|.|.|||..+-+....
T Consensus 339 ~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 339 GAIVVYDAKTLKEKKR 354 (369)
T ss_dssp TEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCcEEEEE
Confidence 3699999876655443
|
... |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.7e-14 Score=159.77 Aligned_cols=217 Identities=19% Similarity=0.317 Sum_probs=158.4
Q ss_pred eEEEEEecCCCcEEEEEECCCeEEEEECCCCceEE----EeeCCCCCeEEEEEc-----CCCCEEEEEEcCCeEEEEEcC
Q 001472 18 VNCISIGKKACRFLITGGDDQKVNLWAIGKPTALM----SLCGLSSPVDSVAFD-----SAEVLVLAGASTGVIKLWDLE 88 (1072)
Q Consensus 18 Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~----sl~~hs~~ItsLafS-----PdG~~LatGS~DGsI~IWDl~ 88 (1072)
+....++-.|.++++-.+ ..+++|++..+..+. ...-......|-+|+ +.+--|++|-..|.|.+.|..
T Consensus 126 ~~~~~~~~~gd~lcFnvg--~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVG--RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred eeeccccCCCCEEEEecC--CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 444455555534333333 358888875322111 111112233455553 567778889889999999876
Q ss_pred CCeeEEEEe----CCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCC--------------Ce--------------EE
Q 001472 89 ESKMVRTLT----GHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRK--------------KG--------------CI 135 (1072)
Q Consensus 89 tgk~i~tl~----~h~~~VtsLafSPdg~-~LaSgs~DGsI~IWDlrt--------------gk--------------~v 135 (1072)
..+..+.+. ..+..|+|+.|-|.++ .|+++-.+|.+++||..- +. ++
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 533222111 2347799999998554 677778899999997531 11 11
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCC
Q 001472 136 HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET 215 (1072)
Q Consensus 136 ~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~t 215 (1072)
..+....+.|..++|+|||++||+.+.||.++|||..+.+++..++..-+...|++|+|||++|++|+.|.-|.||.+..
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence 11222334788999999999999999999999999999998888887788999999999999999999999999999999
Q ss_pred CcEEEeeCCCCCCeEEEEEeC
Q 001472 216 FELIGSTRPEVTGVHAITFHP 236 (1072)
Q Consensus 216 ge~i~~~~~h~~~VtsIafSP 236 (1072)
.+.+..-.+|..+|..++|+|
T Consensus 364 rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 364 RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEeccccccceeeEeecc
Confidence 999999999999999999997
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=160.18 Aligned_cols=232 Identities=22% Similarity=0.333 Sum_probs=172.8
Q ss_pred EEcCCCCEEEE--EEcCCeEEEEEcCCC-ee----EEEEeCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe---
Q 001472 65 AFDSAEVLVLA--GASTGVIKLWDLEES-KM----VRTLTGHKSNCTAVEFHP-FGEFFASGCMDTNLKIWDIRKKG--- 133 (1072)
Q Consensus 65 afSPdG~~Lat--GS~DGsI~IWDl~tg-k~----i~tl~~h~~~VtsLafSP-dg~~LaSgs~DGsI~IWDlrtgk--- 133 (1072)
.|+.+..++++ .+..|.|.||++... ++ +-.+. ....|+++.|.| |...|++++.||.|++|.+..+.
T Consensus 586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e 664 (1012)
T KOG1445|consen 586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE 664 (1012)
T ss_pred ceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc
Confidence 34555555554 455789999999742 21 12222 356799999999 55689999999999999987543
Q ss_pred ----EEEEEecCCCCeEEEEEcC-CCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeE
Q 001472 134 ----CIHTYKGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTV 208 (1072)
Q Consensus 134 ----~v~~l~~h~~~VtsLafSP-DG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtI 208 (1072)
....+..|...|+++.|+| -...|++++.|-+|++||+.+++....+.+|.+.|..++|+|+|+.+++.+.||+|
T Consensus 665 ~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~ 744 (1012)
T KOG1445|consen 665 NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTL 744 (1012)
T ss_pred ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceE
Confidence 3566788999999999999 44588999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCcE-EEeeCCCC-CCeEEEEEeCCCCEEEE-EEC----CcEEEEEecCCee----ecccccCCCeeeeEEecC
Q 001472 209 KFWDLETFEL-IGSTRPEV-TGVHAITFHPDGRTLFS-GFD----DNLKVYSWEPVIC----HDSVDMGWSTLGDLCIND 277 (1072)
Q Consensus 209 rIWDl~tge~-i~~~~~h~-~~VtsIafSPDG~~Las-Gsd----g~I~Vwd~~s~~~----~~~l~~~~s~i~~l~spD 277 (1072)
++|..++++. +..-.+.. ..--.|.|.-||+++++ |.+ ..+.+|+.+.... ...++..-.++...+-+|
T Consensus 745 rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~D 824 (1012)
T KOG1445|consen 745 RVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYD 824 (1012)
T ss_pred EEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCC
Confidence 9999988654 33222221 23457889999999887 433 3488888775442 222333344444444456
Q ss_pred CC-EEEEEEcCCeEEEEEcCC
Q 001472 278 GK-LLGCSFYRNSVGIWVADV 297 (1072)
Q Consensus 278 Gk-~LAsgs~DGsVrIWDlds 297 (1072)
.. +|++|-.|..|.+|.+-.
T Consensus 825 s~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 825 SNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred CceEEEecCCCceEEEEEecC
Confidence 55 566777889999997743
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-12 Score=141.69 Aligned_cols=286 Identities=15% Similarity=0.206 Sum_probs=201.0
Q ss_pred cCceEEEEecCCCCeEEEEEe--cCCCcEEEEEEC----CCeEEEEEC--CCCceEEEe-eCCCCCeEEEEEcCCCC---
Q 001472 4 RGYKLQEFVAHSANVNCISIG--KKACRFLITGGD----DQKVNLWAI--GKPTALMSL-CGLSSPVDSVAFDSAEV--- 71 (1072)
Q Consensus 4 tGk~I~~L~gHsg~Vt~IafS--Pdg~~lLaTGs~----DGtV~IWDl--~t~~~l~sl-~~hs~~ItsLafSPdG~--- 71 (1072)
+++.+..|..| -.+.++.|+ ++...+||.|+. .+.|.|-.+ .+++.+..- ..|..+++.+.|.|+..
T Consensus 34 r~~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~ 112 (364)
T KOG0290|consen 34 RRKEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVY 112 (364)
T ss_pred ccceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccC
Confidence 45566777666 478899998 444468888875 456777655 333332221 36888999999999763
Q ss_pred --EEEEEEcCCeEEEEEcCC--CeeE--EEE-----eCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe---EEE
Q 001472 72 --LVLAGASTGVIKLWDLEE--SKMV--RTL-----TGHKSNCTAVEFHP-FGEFFASGCMDTNLKIWDIRKKG---CIH 136 (1072)
Q Consensus 72 --~LatGS~DGsI~IWDl~t--gk~i--~tl-----~~h~~~VtsLafSP-dg~~LaSgs~DGsI~IWDlrtgk---~v~ 136 (1072)
+||+. +..+++|.+.. .+.. ..+ ..+..+++++.|+. +-++|.+++-|-+..|||++++. ...
T Consensus 113 pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT 190 (364)
T KOG0290|consen 113 PDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT 190 (364)
T ss_pred cchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee
Confidence 45554 35799999873 2211 111 23567899999987 55788999999999999999873 345
Q ss_pred EEecCCCCeEEEEEcCCC-CEEEEEecCCeEEEEECCCCceE---EEeeecCCceEEEEEcCC-CcEEEEEECC-CeEEE
Q 001472 137 TYKGHTRGINTIRFTPDG-RWVVSGGFDNVVKVWDLTAGKLL---HDFKFHEGHIRSIDFHPL-EFLLATGSAD-RTVKF 210 (1072)
Q Consensus 137 ~l~~h~~~VtsLafSPDG-~~LaTGS~DGsI~IWDl~tgk~i---~~~~~h~g~ItsLafSPd-g~lLaTgS~D-GtIrI 210 (1072)
.+-+|...|..++|...+ +.|++.|.||.+++||++..+.- .+-.....+...++|++. -+++|+-..| ..|.|
T Consensus 191 QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i 270 (364)
T KOG0290|consen 191 QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI 270 (364)
T ss_pred EEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence 567899999999999855 47899999999999999876543 332223456888999985 4677776654 46999
Q ss_pred EECCC-CcEEEeeCCCCCCeEEEEEeCC-CCEEEEEECC-cEEEEEecCCee------ecccccCCCeeeeEEe-cCCCE
Q 001472 211 WDLET-FELIGSTRPEVTGVHAITFHPD-GRTLFSGFDD-NLKVYSWEPVIC------HDSVDMGWSTLGDLCI-NDGKL 280 (1072)
Q Consensus 211 WDl~t-ge~i~~~~~h~~~VtsIafSPD-G~~LasGsdg-~I~Vwd~~s~~~------~~~l~~~~s~i~~l~s-pDGk~ 280 (1072)
.|++. ...+..+..|.+.|..|+|.|. +..|++++|+ ...+||+..... .-.+..+..+....|+ ..+.+
T Consensus 271 LDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dw 350 (364)
T KOG0290|consen 271 LDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDW 350 (364)
T ss_pred EEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCE
Confidence 99986 4578889999999999999996 4566766555 588999975432 1112333444555555 36677
Q ss_pred EEEEEcCCeEEEE
Q 001472 281 LGCSFYRNSVGIW 293 (1072)
Q Consensus 281 LAsgs~DGsVrIW 293 (1072)
|++++ ++++.|.
T Consensus 351 iai~~-~kkleiL 362 (364)
T KOG0290|consen 351 IAICF-GKKLEIL 362 (364)
T ss_pred EEEEe-cCeeeEE
Confidence 88774 4445543
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.2e-13 Score=160.99 Aligned_cols=280 Identities=16% Similarity=0.228 Sum_probs=203.5
Q ss_pred CCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCC---CCCeEEEEEcC--CCCEEEEEEcCCeEEEEEcC-C
Q 001472 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGL---SSPVDSVAFDS--AEVLVLAGASTGVIKLWDLE-E 89 (1072)
Q Consensus 16 g~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~h---s~~ItsLafSP--dG~~LatGS~DGsI~IWDl~-t 89 (1072)
..-..+.|+|-. ..+++++..-.|.+||.+.++.+..+..+ ...|..+.+-. |..++++|+.||.|+||+-. +
T Consensus 1065 ~~pk~~~~hpf~-p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFE-PQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCceeeecCCC-ceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 345677888887 67788877779999999999887776543 35688888865 55689999999999999632 2
Q ss_pred ----CeeEEEEeC-------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-CCCCeEEEEEcC-CCCE
Q 001472 90 ----SKMVRTLTG-------HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG-HTRGINTIRFTP-DGRW 156 (1072)
Q Consensus 90 ----gk~i~tl~~-------h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~-h~~~VtsLafSP-DG~~ 156 (1072)
.+.+..+.+ ..+.-.-+.|.....+|+++|.-..|+|||.....++..+.. ....++++.-+- .|+.
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCce
Confidence 233333221 111224467887777788877788999999988877776653 334466665443 4689
Q ss_pred EEEEecCCeEEEEECCCCc---eEEEeeecCCc--eEEEEEcCCCcE-EEEEECCCeEEEEECCCCcEEE--eeCCCC--
Q 001472 157 VVSGGFDNVVKVWDLTAGK---LLHDFKFHEGH--IRSIDFHPLEFL-LATGSADRTVKFWDLETFELIG--STRPEV-- 226 (1072)
Q Consensus 157 LaTGS~DGsI~IWDl~tgk---~i~~~~~h~g~--ItsLafSPdg~l-LaTgS~DGtIrIWDl~tge~i~--~~~~h~-- 226 (1072)
+++|..||.|++||.+... .+..++.|... |..+.+.+.|.- |++|+.||.|++||++...... .+..|.
T Consensus 1224 i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred EEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecccc
Confidence 9999999999999998653 46667778777 999999987654 9999999999999999742211 122221
Q ss_pred C-CeEEEEEeCCCCEEEEEECCcEEEEEecCCeeeccc-------ccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcC
Q 001472 227 T-GVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSV-------DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 227 ~-~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l-------~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDld 296 (1072)
+ ..+++..+++...+++|+.+.|+||+.......... ....+..+..|.|..-++|+|+.|..|.||..+
T Consensus 1304 Gs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred CccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 3 489999999999999998888999998753321110 111244566677788889999999999999654
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-12 Score=144.32 Aligned_cols=283 Identities=16% Similarity=0.220 Sum_probs=194.2
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEe-CCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCC----
Q 001472 59 SPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT-GHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKK---- 132 (1072)
Q Consensus 59 ~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~-~h~~~VtsLafSPdg-~~LaSgs~DGsI~IWDlrtg---- 132 (1072)
..+..++|++.-..++++..|..|++||-.. +....++ ..+..|+|++|-|.+ ..|++|+..| |.||.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 4577899999777889999999999999766 4334444 345679999999965 4788887655 999976421
Q ss_pred e----------EEEEEecCCCCeEEEEEcCCCCEEEEEec-CCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEE
Q 001472 133 G----------CIHTYKGHTRGINTIRFTPDGRWVVSGGF-DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLAT 201 (1072)
Q Consensus 133 k----------~v~~l~~h~~~VtsLafSPDG~~LaTGS~-DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaT 201 (1072)
. .+....+| .+|+++.|.+||..+++++. +..|.|||..++..+.......+.+.-+.|+|||.+|++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 1 11222334 57999999999999998875 578999999999877666555677899999999999999
Q ss_pred EECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCCee----e------c-----c----
Q 001472 202 GSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVIC----H------D-----S---- 262 (1072)
Q Consensus 202 gS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~----~------~-----~---- 262 (1072)
+.-|+..++|...............+.|...+|+|+|++|+....+.-.+|.+.-... . . .
T Consensus 256 At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ 335 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEV 335 (445)
T ss_pred ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhh
Confidence 9999999999655432222222334589999999999999988777767777642110 0 0 0
Q ss_pred -c-----ccCCCeeeeEEecCCCEEEEEEcCCe--------EEEEEcCCCceeeee-cCCCCCCCCCeeEEEECCCCCcc
Q 001472 263 -V-----DMGWSTLGDLCINDGKLLGCSFYRNS--------VGIWVADVSHVEPYG-VGAPEPDQSICTEVKFNPPGSHS 327 (1072)
Q Consensus 263 -l-----~~~~s~i~~l~spDGk~LAsgs~DGs--------VrIWDlds~~l~~~~-v~~~~~~~~~ItsVaFSPDGs~l 327 (1072)
+ .........++-|.|.+||+....+. |.+||........+. .+. .......-++|+|-.+
T Consensus 336 ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~--i~ge~P~~IsF~pl~n-- 411 (445)
T KOG2139|consen 336 TICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGM--IGGEYPAYISFGPLKN-- 411 (445)
T ss_pred hhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEeccc--ccCCCCceEEeeeccc--
Confidence 0 01234556677799999999876543 566765433332222 121 2223356677877332
Q ss_pred ceEEEEEeccCcceEEeecCC
Q 001472 328 LEKVGIIGRSTSGFRSTSPDY 348 (1072)
Q Consensus 328 La~VlaiG~stG~~r~ivpD~ 348 (1072)
--.++.++=++|++.-+-..+
T Consensus 412 ~g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 412 EGRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred CCcEEEEEeccCceEeeeeEE
Confidence 123777777788666555443
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.3e-14 Score=162.18 Aligned_cols=247 Identities=19% Similarity=0.259 Sum_probs=182.0
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC--------CeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCe
Q 001472 52 MSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE--------SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123 (1072)
Q Consensus 52 ~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~t--------gk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGs 123 (1072)
.++..|...|+.++|++-...|++++.||.|.+|+++. -+++.++.+|.++|.|+++.+++.++++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 35667888999999999999999999999999999943 2468889999999999999999999999999999
Q ss_pred EEEEECCCC----------eEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeee--cCCceEEEE
Q 001472 124 LKIWDIRKK----------GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF--HEGHIRSID 191 (1072)
Q Consensus 124 I~IWDlrtg----------k~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~--h~g~ItsLa 191 (1072)
|+.|++... .....+.+|.+.++.+++++....|++++.||+++.|+...... ..|.. ..+...++.
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 999965411 23466789999999999999988999999999999999876655 33332 223345555
Q ss_pred EcCCC-cEEEEEECCCeEEEEECCCCcEEEeeCCC-------CCCeEEEEEeCCCCEEEEEE-CCcEEEEEecCCeeecc
Q 001472 192 FHPLE-FLLATGSADRTVKFWDLETFELIGSTRPE-------VTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDS 262 (1072)
Q Consensus 192 fSPdg-~lLaTgS~DGtIrIWDl~tge~i~~~~~h-------~~~VtsIafSPDG~~LasGs-dg~I~Vwd~~s~~~~~~ 262 (1072)
+-... ...++...-+.-.+++......+..+... ...+..+.++|.+.+.+++. +..|+++|..++.....
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 54332 22222222233333333333333222211 13477889999998888875 55699999998887665
Q ss_pred cccCC-CeeeeEEecCCCEEEEEEcCCeEEEEEcCCCc
Q 001472 263 VDMGW-STLGDLCINDGKLLGCSFYRNSVGIWVADVSH 299 (1072)
Q Consensus 263 l~~~~-s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~ 299 (1072)
...+- ...+.++.++|-+|++++.||.+++|.++...
T Consensus 527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred eeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 54443 44455666899999999999999999886554
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-12 Score=153.75 Aligned_cols=226 Identities=11% Similarity=0.088 Sum_probs=158.7
Q ss_pred CceEEEEecCCCCeEEEEEecCCCcEEEEEE--CCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEE-EcCC-
Q 001472 5 GYKLQEFVAHSANVNCISIGKKACRFLITGG--DDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAG-ASTG- 80 (1072)
Q Consensus 5 Gk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs--~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatG-S~DG- 80 (1072)
|...+.+..+...+.+.+|+|||..++++.. .+..|.+|++.+++.. .+......+..+.|+|||+.|+.. +.+|
T Consensus 188 g~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~~~~~~~~SPDG~~La~~~~~~g~ 266 (429)
T PRK03629 188 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGS 266 (429)
T ss_pred CCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCCCcCCeEECCCCCEEEEEEcCCCC
Confidence 4445666677788999999999954444432 2457999999776533 232333445578999999988865 3344
Q ss_pred -eEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 001472 81 -VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD-T--NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW 156 (1072)
Q Consensus 81 -sI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~D-G--sI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~ 156 (1072)
.|++||+.+++... +..+...+....|+|||+.|+.++.+ | .|+++|+.++.. ..+...........|+|||++
T Consensus 267 ~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~ 344 (429)
T PRK03629 267 LNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKF 344 (429)
T ss_pred cEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCE
Confidence 59999998877654 34445567889999999988877654 3 566668776654 333334445667899999999
Q ss_pred EEEEecC---CeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCe---EEEEECCCCcEEEeeCCCCCCeE
Q 001472 157 VVSGGFD---NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT---VKFWDLETFELIGSTRPEVTGVH 230 (1072)
Q Consensus 157 LaTGS~D---GsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGt---IrIWDl~tge~i~~~~~h~~~Vt 230 (1072)
|+..+.+ ..|.+||+.+++... +.. ........|+|||..|+.++.++. +.++++. +.....+..+.+.+.
T Consensus 345 Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~ 421 (429)
T PRK03629 345 MVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVK 421 (429)
T ss_pred EEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcC
Confidence 9876643 368899998886543 321 222346789999999999887764 7777874 555566666777788
Q ss_pred EEEEeC
Q 001472 231 AITFHP 236 (1072)
Q Consensus 231 sIafSP 236 (1072)
..+|+|
T Consensus 422 ~p~Wsp 427 (429)
T PRK03629 422 FPAWSP 427 (429)
T ss_pred CcccCC
Confidence 899987
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-13 Score=146.68 Aligned_cols=236 Identities=18% Similarity=0.227 Sum_probs=178.4
Q ss_pred EeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC---eeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001472 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES---KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDI 129 (1072)
Q Consensus 53 sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tg---k~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDl 129 (1072)
.+.....+|+|.+|++|+..++++.....|.||..... +..++++.|...|++++|.|..+.|++|+.|..-++|..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 34445689999999999999999999999999988754 467888999999999999999999999999999999998
Q ss_pred CCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceE----EEeeecCCceEEEEEcCCCcEEEEE
Q 001472 130 RKK---GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLL----HDFKFHEGHIRSIDFHPLEFLLATG 202 (1072)
Q Consensus 130 rtg---k~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i----~~~~~h~g~ItsLafSPdg~lLaTg 202 (1072)
..+ +....+..++..++++.|+|.++.|++|+....|.||-++...-- +.-+.+...|.+++|+|++-+|++|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 433 344556668889999999999999999999999999887654322 1223456789999999999999999
Q ss_pred ECCCeEEEEECC-----C-------------CcEEEeeCCCCCCeEEEEEeCCCCEEEE-EECCcEEEEEecCCe-eecc
Q 001472 203 SADRTVKFWDLE-----T-------------FELIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWEPVI-CHDS 262 (1072)
Q Consensus 203 S~DGtIrIWDl~-----t-------------ge~i~~~~~h~~~VtsIafSPDG~~Las-Gsdg~I~Vwd~~s~~-~~~~ 262 (1072)
+.|+..++|..- . |+.+.++....+.+..+.|+|+|..|+. +.|..+.+-|..... ....
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 999999998642 1 2333444455678999999999999986 677777777765443 2233
Q ss_pred cccCCCeeeeEEecCCCEEEEEEcCC
Q 001472 263 VDMGWSTLGDLCINDGKLLGCSFYRN 288 (1072)
Q Consensus 263 l~~~~s~i~~l~spDGk~LAsgs~DG 288 (1072)
......+...+.+-....++++++|.
T Consensus 245 ~~~~~lP~ls~~~ise~~vv~ag~~c 270 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISENSVVAAGYDC 270 (361)
T ss_pred hhhccCCceeeEeecCCceeecCCCC
Confidence 33333333333333333444444553
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-14 Score=162.76 Aligned_cols=231 Identities=17% Similarity=0.285 Sum_probs=200.9
Q ss_pred CCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEE
Q 001472 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRT 95 (1072)
Q Consensus 16 g~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~t 95 (1072)
..-..+.|+.+| +.|+.|+..|.|-.+|+.++.....+. ....|..+.|-.+.++||++ ....++|||- .|..++.
T Consensus 130 FGPY~~~ytrnG-rhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHC 205 (545)
T KOG1272|consen 130 FGPYHLDYTRNG-RHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHC 205 (545)
T ss_pred cCCeeeeecCCc-cEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEee
Confidence 445678899998 889999999999999999998888776 46678999999999888886 4578999994 5667777
Q ss_pred EeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCc
Q 001472 96 LTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK 175 (1072)
Q Consensus 96 l~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk 175 (1072)
++. ...|..+.|.|..-+|++++..|.+..-|+..|+.+..+....+.+..++-+|-+-.+-+|..+|+|.+|.....+
T Consensus 206 lk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 206 LKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 774 4568899999998889999999999999999999999988888889999999988889999999999999999999
Q ss_pred eEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCcEEEEE
Q 001472 176 LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYS 253 (1072)
Q Consensus 176 ~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd 253 (1072)
++..+.+|.++|.+|++.++|.++++.+.|..++|||+++...+..+.. ..+...++||..| .|+.|..+.+.||.
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLALSYGDHVQIWK 360 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-ceeeecCCeeeeeh
Confidence 9999999999999999999999999999999999999999887766655 4567788888654 56777777888986
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-13 Score=146.32 Aligned_cols=200 Identities=20% Similarity=0.399 Sum_probs=156.2
Q ss_pred cCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCce-EEEe-----eCCCCCeEEEEEcC--CCCEEEEEEcCCeEEE
Q 001472 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTA-LMSL-----CGLSSPVDSVAFDS--AEVLVLAGASTGVIKL 84 (1072)
Q Consensus 13 gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~-l~sl-----~~hs~~ItsLafSP--dG~~LatGS~DGsI~I 84 (1072)
.|-+.|.|+.|.|++.+ |++-. |..|.+|++..+.. ...+ ..+....++-+|+| +|+.+++. .|+++..
T Consensus 121 eavg~i~cvew~Pns~k-lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~ 197 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDK-LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQF 197 (370)
T ss_pred HHhCceeeEEEcCCCCe-eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEE
Confidence 45579999999998844 44443 88999999977655 3333 23456678889998 77777775 5799999
Q ss_pred EEcCCCeeEEEEe-CCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCC-eEEEEEecCCCCeEEEEEcCC-CCEEEEE
Q 001472 85 WDLEESKMVRTLT-GHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKK-GCIHTYKGHTRGINTIRFTPD-GRWVVSG 160 (1072)
Q Consensus 85 WDl~tgk~i~tl~-~h~~~VtsLafSPdg~-~LaSgs~DGsI~IWDlrtg-k~v~~l~~h~~~VtsLafSPD-G~~LaTG 160 (1072)
||+++.+....+. .|...|..+.|+|+.+ +|++|+.||.|+|||.+.- .++..+.+|...|+++.|+|. .+++++|
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEec
Confidence 9999877665553 6888899999999876 6788899999999999864 468889999999999999994 4578899
Q ss_pred ecCCeEEEEECCCC-----------------------------ceEEEeeecCCceEEEEEcCC-CcEEEEEECCCeEEE
Q 001472 161 GFDNVVKVWDLTAG-----------------------------KLLHDFKFHEGHIRSIDFHPL-EFLLATGSADRTVKF 210 (1072)
Q Consensus 161 S~DGsI~IWDl~tg-----------------------------k~i~~~~~h~g~ItsLafSPd-g~lLaTgS~DGtIrI 210 (1072)
+.|..|.+|-..+- ..+..+..|...|++++|+.- --++++-+.||.+.|
T Consensus 278 ~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 278 GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred CCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 99999999964321 123456678899999999874 456778899999988
Q ss_pred EECCC
Q 001472 211 WDLET 215 (1072)
Q Consensus 211 WDl~t 215 (1072)
=.+..
T Consensus 358 s~V~r 362 (370)
T KOG1007|consen 358 SSVPR 362 (370)
T ss_pred ecCCh
Confidence 66543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.6e-12 Score=148.50 Aligned_cols=233 Identities=13% Similarity=0.047 Sum_probs=160.3
Q ss_pred CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 001472 80 GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM---DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW 156 (1072)
Q Consensus 80 GsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~---DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~ 156 (1072)
..|++||.... ....+..+...+.+..|+|||+.|+..+. +..|++||+.++... .+..+.+.+....|+|||+.
T Consensus 182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 37899998544 44556678889999999999998888754 468999999887653 34445566788999999997
Q ss_pred EEE-EecCC--eEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEEC-CC--eEEEEECCCCcEEEeeCCCCCCeE
Q 001472 157 VVS-GGFDN--VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA-DR--TVKFWDLETFELIGSTRPEVTGVH 230 (1072)
Q Consensus 157 LaT-GS~DG--sI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~-DG--tIrIWDl~tge~i~~~~~h~~~Vt 230 (1072)
|+. .+.++ .|++||+.++... .+..+.+......|+|||+.|+..+. +| .|++||+..++.. .+......+.
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~ 337 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYS 337 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCccc
Confidence 764 44454 4888899877654 34445556678999999998887764 33 6888998766543 3333344567
Q ss_pred EEEEeCCCCEEEEEEC--C--cEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcC------CeEEEEEcCCCce
Q 001472 231 AITFHPDGRTLFSGFD--D--NLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYR------NSVGIWVADVSHV 300 (1072)
Q Consensus 231 sIafSPDG~~LasGsd--g--~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~D------GsVrIWDlds~~l 300 (1072)
...|+|||++|+.... + .|.+|+...... ..+...+......|+|||++|+..+.+ ..|.+++++.+..
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 7899999999987542 2 366666644332 223333445567788999988776543 2466777766554
Q ss_pred eeeecCCCCCCCCCeeEEEECCC
Q 001472 301 EPYGVGAPEPDQSICTEVKFNPP 323 (1072)
Q Consensus 301 ~~~~v~~~~~~~~~ItsVaFSPD 323 (1072)
..+. ..+.+...+|||.
T Consensus 417 ~~l~------~~~~~~~p~Wsp~ 433 (435)
T PRK05137 417 REVP------TPGDASDPAWSPL 433 (435)
T ss_pred EEcc------CCCCccCcccCCC
Confidence 3321 2334677899884
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.1e-12 Score=148.17 Aligned_cols=213 Identities=15% Similarity=0.081 Sum_probs=152.5
Q ss_pred eEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEc---CCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEE
Q 001472 39 KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS---TGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFF 115 (1072)
Q Consensus 39 tV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~---DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~L 115 (1072)
.|.+||.. +.....+..+...+.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+..|+|||+.|
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence 78888874 4445566678889999999999999888764 468999999888653 344566677889999999977
Q ss_pred EE-EeCCC--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEec-CC--eEEEEECCCCceEEEeeecCCceEE
Q 001472 116 AS-GCMDT--NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF-DN--VVKVWDLTAGKLLHDFKFHEGHIRS 189 (1072)
Q Consensus 116 aS-gs~DG--sI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~-DG--sI~IWDl~tgk~i~~~~~h~g~Its 189 (1072)
+. .+.+| .|++||+.++.. ..+..+........|+|||++|+..+. +| .|++||+..+.... +..+.+.+..
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~ 338 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYST 338 (435)
T ss_pred EEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccC
Confidence 64 44444 488889987765 445545555678999999999887764 33 68889987665443 3334555677
Q ss_pred EEEcCCCcEEEEEECC---CeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEEC-------CcEEEEEecCC
Q 001472 190 IDFHPLEFLLATGSAD---RTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFD-------DNLKVYSWEPV 257 (1072)
Q Consensus 190 LafSPdg~lLaTgS~D---GtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsd-------g~I~Vwd~~s~ 257 (1072)
..|+|+|+.|+..+.+ ..|.+||+..+.. ..+.. ...+..+.|+|||++|+.... ..+++++++..
T Consensus 339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred eEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 8999999999887653 3688899865543 22322 234678899999999887432 13555565443
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-12 Score=145.52 Aligned_cols=273 Identities=15% Similarity=0.194 Sum_probs=195.3
Q ss_pred EeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC------CeeEEEEe-CCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 001472 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE------SKMVRTLT-GHKSNCTAVEFHPFGEFFASGCMDTNLK 125 (1072)
Q Consensus 53 sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~t------gk~i~tl~-~h~~~VtsLafSPdg~~LaSgs~DGsI~ 125 (1072)
.+.+|.+.|.++.|+.++++|++|+.|..+.+|.++. .+++.... .|...|.|++|...+.++++|+.+|+|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 3467999999999999999999999999999999853 34555443 3558899999999899999999999999
Q ss_pred EEECCCCeEEEEEec--CCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCc-eEE--EeeecCCceEEEEEcCC-CcEE
Q 001472 126 IWDIRKKGCIHTYKG--HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK-LLH--DFKFHEGHIRSIDFHPL-EFLL 199 (1072)
Q Consensus 126 IWDlrtgk~v~~l~~--h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk-~i~--~~~~h~g~ItsLafSPd-g~lL 199 (1072)
..|+.+.+.+..+.. ..+.|+.+..+|..+.|++.+.+|.|.+||.+... .+. ..........++.|+|. -.+|
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence 999999988877752 23489999999998999999999999999998654 221 12223455788899996 4678
Q ss_pred EEEECCCeEEEEECCCCcE-EE------eeCCCCCCeEEEEEeCCCCEEEEEECC-cEEEEEecCCeeecc-ccc---CC
Q 001472 200 ATGSADRTVKFWDLETFEL-IG------STRPEVTGVHAITFHPDGRTLFSGFDD-NLKVYSWEPVICHDS-VDM---GW 267 (1072)
Q Consensus 200 aTgS~DGtIrIWDl~tge~-i~------~~~~h~~~VtsIafSPDG~~LasGsdg-~I~Vwd~~s~~~~~~-l~~---~~ 267 (1072)
++.+..+-+-+||.+.... +. .+......-.++.|+|.|..+.+-..+ .-.+||+-...|... +++ ++
T Consensus 211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY 290 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGY 290 (609)
T ss_pred EeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcc
Confidence 8888889999999986432 11 111112233678899999888775433 345677766444322 221 11
Q ss_pred C---eeeeEEecCCCEEEEEEcCCeEEEEEcCC----------Cc---------eeeeecCCCCCCCCCeeEEEECCCCC
Q 001472 268 S---TLGDLCINDGKLLGCSFYRNSVGIWVADV----------SH---------VEPYGVGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 268 s---~i~~l~spDGk~LAsgs~DGsVrIWDlds----------~~---------l~~~~v~~~~~~~~~ItsVaFSPDGs 325 (1072)
- .+..+++.+..-+++|+.+-.|++|.+.. +. +..-.+....+|.+-+..|.|+|-..
T Consensus 291 ~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~ 370 (609)
T KOG4227|consen 291 CNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNN 370 (609)
T ss_pred eeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcc
Confidence 1 12234445666799999999999998731 11 00001112257888899999999655
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-12 Score=151.80 Aligned_cols=226 Identities=12% Similarity=0.075 Sum_probs=157.7
Q ss_pred cCceEEEEecCCCCeEEEEEecCCCcEEEEEEC---CCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEE-EEcC
Q 001472 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGD---DQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLA-GAST 79 (1072)
Q Consensus 4 tGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~---DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~Lat-GS~D 79 (1072)
.|...+.+..|...+.+.+|+||| +.|+.++. +..|++||+.++... .+..+.....++.|+|+|+.|+. .+.+
T Consensus 192 ~g~~~~~lt~~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~ 269 (433)
T PRK04922 192 DGYNPQTILRSAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRD 269 (433)
T ss_pred CCCCceEeecCCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCC
Confidence 355566777888889999999999 55555543 346999999776643 33334445567899999998765 4445
Q ss_pred C--eEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCC
Q 001472 80 G--VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM-DT--NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDG 154 (1072)
Q Consensus 80 G--sI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~-DG--sI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG 154 (1072)
| .|++||+.+++.. .+..+......++|+|||++|+.++. +| .|+++|+.+++... +..+......++|+|||
T Consensus 270 g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG 347 (433)
T PRK04922 270 GNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDG 347 (433)
T ss_pred CCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCC
Confidence 5 6999999887754 44555555678899999998887764 34 47788887766433 32233445578999999
Q ss_pred CEEEEEecCC---eEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECC---CeEEEEECCCCcEEEeeCCCCCC
Q 001472 155 RWVVSGGFDN---VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSAD---RTVKFWDLETFELIGSTRPEVTG 228 (1072)
Q Consensus 155 ~~LaTGS~DG---sI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~D---GtIrIWDl~tge~i~~~~~h~~~ 228 (1072)
++|+..+.++ .|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|+++++.. .....+..+.+.
T Consensus 348 ~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~ 424 (433)
T PRK04922 348 KKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGE 424 (433)
T ss_pred CEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCCCC
Confidence 9998765433 6999999888755 333 23345567999999988777653 4688888864 444555445566
Q ss_pred eEEEEEeC
Q 001472 229 VHAITFHP 236 (1072)
Q Consensus 229 VtsIafSP 236 (1072)
+...+|+|
T Consensus 425 ~~~p~wsp 432 (433)
T PRK04922 425 VREPAWSP 432 (433)
T ss_pred CCCCccCC
Confidence 77778876
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-10 Score=132.81 Aligned_cols=286 Identities=16% Similarity=0.230 Sum_probs=187.9
Q ss_pred EEEEECC----CeEEEEEC--CCCceE--EEeeCCCCCeEEEEEcCCCCEEEEEEc----CCeEEEEEcCCC--ee--EE
Q 001472 31 LITGGDD----QKVNLWAI--GKPTAL--MSLCGLSSPVDSVAFDSAEVLVLAGAS----TGVIKLWDLEES--KM--VR 94 (1072)
Q Consensus 31 LaTGs~D----GtV~IWDl--~t~~~l--~sl~~hs~~ItsLafSPdG~~LatGS~----DGsI~IWDl~tg--k~--i~ 94 (1072)
+++|+.. +.|.+|++ .+++.. ..+ ........++++|++++|++... +|.|..|++... ++ +.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4555555 78999988 333321 222 23445677999999999999887 468999988763 32 33
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCC-CeEEEE---Ee----------cCCCCeEEEEEcCCCCEEEE
Q 001472 95 TLTGHKSNCTAVEFHPFGEFFASGCM-DTNLKIWDIRK-KGCIHT---YK----------GHTRGINTIRFTPDGRWVVS 159 (1072)
Q Consensus 95 tl~~h~~~VtsLafSPdg~~LaSgs~-DGsI~IWDlrt-gk~v~~---l~----------~h~~~VtsLafSPDG~~LaT 159 (1072)
........-..++++|++++|+++.. +|.|.+|++.. +..... +. ......+++.|+|+|+++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 33334455667999999999999875 89999999987 433222 21 12345789999999998888
Q ss_pred Eec-CCeEEEEECCCCc--eE--EEee-ecCCceEEEEEcCCCcEEEEEEC-CCeEEEEECC--CCc--EEEeeCC----
Q 001472 160 GGF-DNVVKVWDLTAGK--LL--HDFK-FHEGHIRSIDFHPLEFLLATGSA-DRTVKFWDLE--TFE--LIGSTRP---- 224 (1072)
Q Consensus 160 GS~-DGsI~IWDl~tgk--~i--~~~~-~h~g~ItsLafSPdg~lLaTgS~-DGtIrIWDl~--tge--~i~~~~~---- 224 (1072)
... ...|.+|++.... +. ..+. ........++|+|+++++++... ++.|.+|++. .+. .+..+..
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 764 3479999987654 32 2222 23455789999999998877764 7789999988 443 2222211
Q ss_pred --CCCCeEEEEEeCCCCEEEEEE--CCcEEEEEecCC----eeeccccc-CCCeeeeEEecCCCEEEEEE-cCCeEEEEE
Q 001472 225 --EVTGVHAITFHPDGRTLFSGF--DDNLKVYSWEPV----ICHDSVDM-GWSTLGDLCINDGKLLGCSF-YRNSVGIWV 294 (1072)
Q Consensus 225 --h~~~VtsIafSPDG~~LasGs--dg~I~Vwd~~s~----~~~~~l~~-~~s~i~~l~spDGk~LAsgs-~DGsVrIWD 294 (1072)
.......|+++|||++|+++. .+.|.+|+++.. .....+.. +..+....+.++|++|+++. .++.|.+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 112578999999999999975 456999999532 22333333 45578888899999999887 567999998
Q ss_pred cC--CCceeeeecCCCCCCCCCeeEEEE
Q 001472 295 AD--VSHVEPYGVGAPEPDQSICTEVKF 320 (1072)
Q Consensus 295 ld--s~~l~~~~v~~~~~~~~~ItsVaF 320 (1072)
++ .+.+..... ...-....|+.|
T Consensus 321 ~d~~tG~l~~~~~---~~~~~~p~ci~f 345 (345)
T PF10282_consen 321 IDPDTGKLTPVGS---SVPIPSPVCIVF 345 (345)
T ss_dssp EETTTTEEEEEEE---EEESSSEEEEEE
T ss_pred EeCCCCcEEEecc---cccCCCCEEEeC
Confidence 75 444444431 122345666666
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-12 Score=147.00 Aligned_cols=284 Identities=10% Similarity=0.101 Sum_probs=212.4
Q ss_pred EEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001472 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87 (1072)
Q Consensus 8 I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl 87 (1072)
++.| .|...-+.|..+|||..++++|..--.|++||+........-......|.-.-.+.|-..++.-..|..|.+..-
T Consensus 45 iQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 45 IQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred HHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 3444 577788999999999888899999999999999776544443333344444455555555666666777766542
Q ss_pred CCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEE
Q 001472 88 EESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVK 167 (1072)
Q Consensus 88 ~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~ 167 (1072)
-|.. ..+. -.....+++++.-.--|++++....|+-+++..|..+..+....+.++++..++-+.+|++|+.+|.|-
T Consensus 124 -~G~h-y~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VE 200 (703)
T KOG2321|consen 124 -YGRH-YRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVE 200 (703)
T ss_pred -cCee-eeee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEE
Confidence 2221 1111 122345666665444455555667799999999999999988888999999999999999999999999
Q ss_pred EEECCCCceEEEeee------cCC-----ceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEee-CCCCCCeEEEEEe
Q 001472 168 VWDLTAGKLLHDFKF------HEG-----HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGST-RPEVTGVHAITFH 235 (1072)
Q Consensus 168 IWDl~tgk~i~~~~~------h~g-----~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~-~~h~~~VtsIafS 235 (1072)
+||.++...+..+.. |.+ .|+++.|+.+|-.+++|..+|.+.|||++..+++..- .....+|..+.|.
T Consensus 201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~ 280 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQ 280 (703)
T ss_pred EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccc
Confidence 999988766555542 223 3999999999999999999999999999988775433 3345679999997
Q ss_pred CC--CCEEEEEECCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCCeEEEEEc
Q 001472 236 PD--GRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1072)
Q Consensus 236 PD--G~~LasGsdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDl 295 (1072)
+. +..+++.....++|||-..++....+.........++.|++.+++++..++.+..|-+
T Consensus 281 ~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 281 DTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred ccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEc
Confidence 75 5667777666799999999888887777666666667799999999998888887765
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-13 Score=152.54 Aligned_cols=195 Identities=16% Similarity=0.278 Sum_probs=155.6
Q ss_pred EEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeC
Q 001472 19 NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG 98 (1072)
Q Consensus 19 t~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~ 98 (1072)
.+++|+.+| ..|++|+.||+++||++.....+.....|...|.++.|+|||++|++-+.| ...||+.++|-.+.....
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 789999998 799999999999999998888888888899999999999999999999999 899999999976665542
Q ss_pred --CCCCeEEEEEcCCC---CEEEEE--eCCCeEEEEECCCCeE-----EEEEecCCCCeEEEEEcCCCCEEEEEecCCeE
Q 001472 99 --HKSNCTAVEFHPFG---EFFASG--CMDTNLKIWDIRKKGC-----IHTYKGHTRGINTIRFTPDGRWVVSGGFDNVV 166 (1072)
Q Consensus 99 --h~~~VtsLafSPdg---~~LaSg--s~DGsI~IWDlrtgk~-----v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI 166 (1072)
.......+.|+.++ .+++.+ ..-+.|..||+..... ..........|.+++.+.+|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 23446678888776 333332 3345677766542211 11111223469999999999999999999999
Q ss_pred EEEECCCCceEEEee-ecCCceEEEEEcCCCcEEEEEECCCeEEEEECCC
Q 001472 167 KVWDLTAGKLLHDFK-FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET 215 (1072)
Q Consensus 167 ~IWDl~tgk~i~~~~-~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~t 215 (1072)
.|++..+.+.++-++ .|.+.|+.+.|+|+.+++++.+.+....+..+.-
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999998888766554 7889999999999999999988888888876653
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.6e-12 Score=149.92 Aligned_cols=227 Identities=12% Similarity=0.059 Sum_probs=153.2
Q ss_pred cCceEEEEecCCCCeEEEEEecCCCcEEEEEEC-C--CeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEE-EEcC
Q 001472 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGD-D--QKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLA-GAST 79 (1072)
Q Consensus 4 tGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~-D--GtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~Lat-GS~D 79 (1072)
.|...+.+..|...+.+.+|+||| +.|+..+. + ..|.+||+.+++... +......+.+.+|+|||+.|+. .+.+
T Consensus 184 dG~~~~~l~~~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~ 261 (427)
T PRK02889 184 DGQNAQSALSSPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRD 261 (427)
T ss_pred CCCCceEeccCCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccC
Confidence 455556677888899999999999 55555443 3 459999998776543 3334455678999999998875 5667
Q ss_pred CeEEEE--EcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEE--ECCCCeEEEEEecCCCCeEEEEEcCCC
Q 001472 80 GVIKLW--DLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM-DTNLKIW--DIRKKGCIHTYKGHTRGINTIRFTPDG 154 (1072)
Q Consensus 80 GsI~IW--Dl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~-DGsI~IW--Dlrtgk~v~~l~~h~~~VtsLafSPDG 154 (1072)
|...|| |+.++. ...+..+........|+|||++|+..+. +|...|| ++..+.... +...........|+|||
T Consensus 262 g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG 339 (427)
T PRK02889 262 GNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDG 339 (427)
T ss_pred CCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCC
Confidence 765555 555444 4455555556677899999998887654 3555555 555554322 22223334568999999
Q ss_pred CEEEEEecCC---eEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCC---eEEEEECCCCcEEEeeCCCCCC
Q 001472 155 RWVVSGGFDN---VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADR---TVKFWDLETFELIGSTRPEVTG 228 (1072)
Q Consensus 155 ~~LaTGS~DG---sI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DG---tIrIWDl~tge~i~~~~~h~~~ 228 (1072)
++|+..+.++ .|.+||+.+++...... ........|+|||+.|+.++.++ .+++.++. +.....+..+.+.
T Consensus 340 ~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~ 416 (427)
T PRK02889 340 KLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGD 416 (427)
T ss_pred CEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCCC
Confidence 9998877554 69999998887543322 23346789999999888877544 36666763 5555555555566
Q ss_pred eEEEEEeCC
Q 001472 229 VHAITFHPD 237 (1072)
Q Consensus 229 VtsIafSPD 237 (1072)
+...+|+|-
T Consensus 417 ~~~p~wsp~ 425 (427)
T PRK02889 417 VREPSWGPF 425 (427)
T ss_pred CCCCccCCC
Confidence 777888763
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.7e-12 Score=138.47 Aligned_cols=234 Identities=16% Similarity=0.212 Sum_probs=180.6
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeEEE
Q 001472 59 SPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD--TNLKIWDIRKKGCIH 136 (1072)
Q Consensus 59 ~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~D--GsI~IWDlrtgk~v~ 136 (1072)
..+..+.|+.+...|..|+.|| .++|.................|..+-|+ ..++|..+.+ ..+++++++.+..+.
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEE
Confidence 4566777999999999999988 6788776554433333334456666676 4566665554 459999999888887
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeec---CCceEEEEEcCCCcEEEEEE--CCCeEEEE
Q 001472 137 TYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH---EGHIRSIDFHPLEFLLATGS--ADRTVKFW 211 (1072)
Q Consensus 137 ~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h---~g~ItsLafSPdg~lLaTgS--~DGtIrIW 211 (1072)
.+. ....|.++.++.+ .|+++=++ .|+|||+++.+++.++... ...+.++++++.+.+|+.-+ ..|.|.+|
T Consensus 83 e~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 83 EIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 776 4567999999754 45555444 4999999999998887643 34466666666677887654 36899999
Q ss_pred ECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCc--EEEEEecCCeeecccccCCC---eeeeEEecCCCEEEEEEc
Q 001472 212 DLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN--LKVYSWEPVICHDSVDMGWS---TLGDLCINDGKLLGCSFY 286 (1072)
Q Consensus 212 Dl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~--I~Vwd~~s~~~~~~l~~~~s---~i~~l~spDGk~LAsgs~ 286 (1072)
|+.+.+.+..+..|.+.+.+++|+++|.+||++++.+ |+||....+.....+..+.. +....|++|+++|++++.
T Consensus 159 d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 159 DTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred EcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence 9999999999999999999999999999999999877 99999998888777766544 345567799999999999
Q ss_pred CCeEEEEEcCCCc
Q 001472 287 RNSVGIWVADVSH 299 (1072)
Q Consensus 287 DGsVrIWDlds~~ 299 (1072)
.++|+||.++...
T Consensus 239 TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 239 TETVHIFKLEKVS 251 (391)
T ss_pred CCeEEEEEecccc
Confidence 9999999986443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.4e-12 Score=148.48 Aligned_cols=234 Identities=11% Similarity=0.038 Sum_probs=151.6
Q ss_pred CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 001472 80 GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD---TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW 156 (1072)
Q Consensus 80 GsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~D---GsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~ 156 (1072)
..|.+||.. +.....+..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+..|+|||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 367788874 44444555677889999999999998887643 459999999887543 3333455678999999998
Q ss_pred EEE-EecCCeEEEE--ECCCCceEEEeeecCCceEEEEEcCCCcEEEEEEC-CCeEEEE--ECCCCcEEEeeCCCCCCeE
Q 001472 157 VVS-GGFDNVVKVW--DLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA-DRTVKFW--DLETFELIGSTRPEVTGVH 230 (1072)
Q Consensus 157 LaT-GS~DGsI~IW--Dl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~-DGtIrIW--Dl~tge~i~~~~~h~~~Vt 230 (1072)
|+. .+.+|...+| |+..+. ...+..+.+......|+|||+.|+..+. +|...+| ++..+.... +........
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~ 331 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNT 331 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcC
Confidence 874 5667765554 555554 4445445555677899999998876654 4555555 445444322 222223345
Q ss_pred EEEEeCCCCEEEEEECC----cEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCC-e--EEEEEcCCCceeee
Q 001472 231 AITFHPDGRTLFSGFDD----NLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRN-S--VGIWVADVSHVEPY 303 (1072)
Q Consensus 231 sIafSPDG~~LasGsdg----~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DG-s--VrIWDlds~~l~~~ 303 (1072)
...|+|||++|+..+.. .|.+|++..+........ .......|+|||++|+.++.++ . +.+.+++......+
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l 410 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRL 410 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEe
Confidence 68999999999875432 388999877665443332 2234567889999888777543 3 44445543322222
Q ss_pred ecCCCCCCCCCeeEEEECCC
Q 001472 304 GVGAPEPDQSICTEVKFNPP 323 (1072)
Q Consensus 304 ~v~~~~~~~~~ItsVaFSPD 323 (1072)
..+.+.+..++|+|.
T Consensus 411 -----~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 411 -----SVQGGDVREPSWGPF 425 (427)
T ss_pred -----ecCCCCCCCCccCCC
Confidence 233456777899984
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.8e-13 Score=153.37 Aligned_cols=164 Identities=18% Similarity=0.336 Sum_probs=130.2
Q ss_pred CCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEE--cCCCCEEEEEEcCCeEEEEEcCCCee
Q 001472 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAF--DSAEVLVLAGASTGVIKLWDLEESKM 92 (1072)
Q Consensus 15 sg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLaf--SPdG~~LatGS~DGsI~IWDl~tgk~ 92 (1072)
...|+||.|-|.+..+++.+-.+|.+++||.. +........| .+++..+......+. .+..+
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~----------~~~~~t~p~~~~~k~~~~f~i~t~ksk------~~rNP 282 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE----------IVCGATAPSYQALKDGDQFAILTSKSK------KTRNP 282 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeecc----------ccccCCCCcccccCCCCeeEEeeeecc------ccCCc
Confidence 37899999999988899999999999999961 1112222222 245555544332211 11133
Q ss_pred EEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECC
Q 001472 93 VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172 (1072)
Q Consensus 93 i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~ 172 (1072)
+..+.-..+.|..++|+|||++||+.+.||.++|||+.+.+.+..++..-+...|++|+|||+||++|++|--|.||.+.
T Consensus 283 v~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 283 VARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred cceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 34444345689999999999999999999999999999988888887777889999999999999999999999999999
Q ss_pred CCceEEEeeecCCceEEEEEcC
Q 001472 173 AGKLLHDFKFHEGHIRSIDFHP 194 (1072)
Q Consensus 173 tgk~i~~~~~h~g~ItsLafSP 194 (1072)
..+.+..-++|..+|..++|.|
T Consensus 363 erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 363 ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cceEEEeccccccceeeEeecc
Confidence 9999999999999999999984
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-13 Score=155.29 Aligned_cols=214 Identities=24% Similarity=0.401 Sum_probs=165.2
Q ss_pred EEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEe-eCCCCCeEEEEEcC--CCCEEEEEEcCCeEEE
Q 001472 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSL-CGLSSPVDSVAFDS--AEVLVLAGASTGVIKL 84 (1072)
Q Consensus 8 I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl-~~hs~~ItsLafSP--dG~~LatGS~DGsI~I 84 (1072)
-++|.||.|.|+|++|+.+| .+|++|+.|-.+.|||....+.++.+ .+|...|.++.|-| +.+.+++|..|..|++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhccccceecceeecCCC-CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 45789999999999999999 89999999999999999887777776 68999999999998 5678999999999999
Q ss_pred EEcCCC----------eeEEEEeCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe-------E---EEEEecCCC
Q 001472 85 WDLEES----------KMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKG-------C---IHTYKGHTR 143 (1072)
Q Consensus 85 WDl~tg----------k~i~tl~~h~~~VtsLafSPdg-~~LaSgs~DGsI~IWDlrtgk-------~---v~~l~~h~~ 143 (1072)
||+... .....+.+|...|.-++-.|++ ..|.+++.||.|+-||++... + +..+...--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 999741 2345566788899999999988 689999999999999998621 1 011111223
Q ss_pred CeEEEEEcCC-CCEEEEEecCCeEEEEECCC--------Cc----------eEEEee-ecC-----------CceEEEEE
Q 001472 144 GINTIRFTPD-GRWVVSGGFDNVVKVWDLTA--------GK----------LLHDFK-FHE-----------GHIRSIDF 192 (1072)
Q Consensus 144 ~VtsLafSPD-G~~LaTGS~DGsI~IWDl~t--------gk----------~i~~~~-~h~-----------g~ItsLaf 192 (1072)
...|+..+|. ..+|++|+.|-..++||.+. +. ++.-|. +|. ..++-+.|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 4688999994 56899999999999999431 11 111111 111 12567789
Q ss_pred cCCCcEEEEEECCCeEEEEECCCCcEEEee
Q 001472 193 HPLEFLLATGSADRTVKFWDLETFELIGST 222 (1072)
Q Consensus 193 SPdg~lLaTgS~DGtIrIWDl~tge~i~~~ 222 (1072)
+|+|.-|++.-....|+++|+..++....+
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 999988777766678999999887655443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.6e-13 Score=149.31 Aligned_cols=193 Identities=21% Similarity=0.309 Sum_probs=151.8
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-
Q 001472 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG- 140 (1072)
Q Consensus 62 tsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~- 140 (1072)
.+++|+.+|..|++|+.||+++||++.....+.....|...|.++.|+|||++|++-+.| ...||+.+++.++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 579999999999999999999999998888888888899999999999999999999999 899999999976655542
Q ss_pred -CCCCeEEEEEcCCC---CEEE--EEecCCeEEEEECCCCce-----EEEeeecCCceEEEEEcCCCcEEEEEECCCeEE
Q 001472 141 -HTRGINTIRFTPDG---RWVV--SGGFDNVVKVWDLTAGKL-----LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVK 209 (1072)
Q Consensus 141 -h~~~VtsLafSPDG---~~La--TGS~DGsI~IWDl~tgk~-----i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIr 209 (1072)
....+..+.|+.|+ .+++ .....+.|..||+...+- ..+.......|++++.+++|++++.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 23346678888877 3333 333455677766643321 111112344699999999999999999999999
Q ss_pred EEECCCCcEEEee-CCCCCCeEEEEEeCCCCEEEEE-ECCcEEEEEec
Q 001472 210 FWDLETFELIGST-RPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWE 255 (1072)
Q Consensus 210 IWDl~tge~i~~~-~~h~~~VtsIafSPDG~~LasG-sdg~I~Vwd~~ 255 (1072)
|++..+.+.+... ..|...|+.+.|+||.++++.. ++....|..+.
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999988776654 4677889999999999999874 45556666654
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=9e-11 Score=128.53 Aligned_cols=233 Identities=15% Similarity=0.230 Sum_probs=166.9
Q ss_pred CeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCC--eEEEEEcCCCCEEEEEE-cC------CeEEEEEc
Q 001472 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP--VDSVAFDSAEVLVLAGA-ST------GVIKLWDL 87 (1072)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~--ItsLafSPdG~~LatGS-~D------GsI~IWDl 87 (1072)
....++|+.|. ..+++|..+| .+||+++-.+.......+... +..+-| ..++|+..+ .+ ..|.|||=
T Consensus 7 ~~lsvs~NQD~-ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDH-SCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCC-ceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEec
Confidence 34558999987 5667776665 899998653332222222222 222222 344554433 32 47999996
Q ss_pred CCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEEecC--CCCeEEEEEcCCCCEEEE-EecC
Q 001472 88 EESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR-KKGCIHTYKGH--TRGINTIRFTPDGRWVVS-GGFD 163 (1072)
Q Consensus 88 ~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlr-tgk~v~~l~~h--~~~VtsLafSPDG~~LaT-GS~D 163 (1072)
...+++.++. ...+|.++.+.+ +.|++. ..+.|++|.+. +-+.++.+... ..++.+++-+.+..+|+. |-.-
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r--~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRR--DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcC--CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 6677777776 678899999984 446655 46789999987 44556655432 234555554445556665 3456
Q ss_pred CeEEEEECCCCce--EEEeeecCCceEEEEEcCCCcEEEEEECCCe-EEEEECCCCcEEEeeCCC--CCCeEEEEEeCCC
Q 001472 164 NVVKVWDLTAGKL--LHDFKFHEGHIRSIDFHPLEFLLATGSADRT-VKFWDLETFELIGSTRPE--VTGVHAITFHPDG 238 (1072)
Q Consensus 164 GsI~IWDl~tgk~--i~~~~~h~g~ItsLafSPdg~lLaTgS~DGt-IrIWDl~tge~i~~~~~h--~~~VtsIafSPDG 238 (1072)
|.|.|.|+...+. ...+.+|...|.|++++-+|..+|+++..|+ |+|||..+|+.+..+... ...|.+++|+|++
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 9999999987665 4778899999999999999999999999998 799999999999888654 3469999999999
Q ss_pred CEEEEEECC-cEEEEEecCC
Q 001472 239 RTLFSGFDD-NLKVYSWEPV 257 (1072)
Q Consensus 239 ~~LasGsdg-~I~Vwd~~s~ 257 (1072)
.+|++++|. ++.||.+...
T Consensus 239 s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred cEEEEEcCCCeEEEEEeecC
Confidence 999998775 5999998753
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-13 Score=162.90 Aligned_cols=261 Identities=18% Similarity=0.280 Sum_probs=193.2
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001472 51 LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130 (1072)
Q Consensus 51 l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlr 130 (1072)
+..+.+|...|+|+.|...|.++++|+.|..++||..+++.++....+|.+.|+.++.+.+.-++++++.|..|++|.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 44456899999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEE---ee-ecCCceEEEEEcCCCcEEEEEECCC
Q 001472 131 KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHD---FK-FHEGHIRSIDFHPLEFLLATGSADR 206 (1072)
Q Consensus 131 tgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~---~~-~h~g~ItsLafSPdg~lLaTgS~DG 206 (1072)
.+.++..+.+|.+.|++++|+|-- +.+.||++++||.+-.-.+.. .+ ....-+.++.|..++.-+++|+.|+
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 999999999999999999999954 677899999999872111111 01 1234466778888888999999999
Q ss_pred eEEEEECCCCcEEEeeCCCCCCeEEEEEeCCC-CEEEEE-ECCcEEEEEecCCeeecccccCCCeeeeEEe-c-CCCEEE
Q 001472 207 TVKFWDLETFELIGSTRPEVTGVHAITFHPDG-RTLFSG-FDDNLKVYSWEPVICHDSVDMGWSTLGDLCI-N-DGKLLG 282 (1072)
Q Consensus 207 tIrIWDl~tge~i~~~~~h~~~VtsIafSPDG-~~LasG-sdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~s-p-DGk~LA 282 (1072)
.-..|.+..... +...+.-+.++.|- .+.++. .+-.+.+|.+-.+...+....+.....++-. | +..+..
T Consensus 339 ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~m 412 (1113)
T KOG0644|consen 339 EARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAM 412 (1113)
T ss_pred ccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhh
Confidence 888887653211 11111112222222 222332 3445778888777666555544444444433 3 556667
Q ss_pred EEEcCCeEEEEEcCCCc-eeeeecCCCCCCCCCeeEEEECCCCCc
Q 001472 283 CSFYRNSVGIWVADVSH-VEPYGVGAPEPDQSICTEVKFNPPGSH 326 (1072)
Q Consensus 283 sgs~DGsVrIWDlds~~-l~~~~v~~~~~~~~~ItsVaFSPDGs~ 326 (1072)
+++.||...|||+-.+. .+.|. .+ .+.+..-+||+||..
T Consensus 413 sag~dgst~iwdi~eg~pik~y~----~g-h~kl~d~kFSqdgts 452 (1113)
T KOG0644|consen 413 SAGYDGSTIIWDIWEGIPIKHYF----IG-HGKLVDGKFSQDGTS 452 (1113)
T ss_pred hccCCCceEeeecccCCcceeee----cc-cceeeccccCCCCce
Confidence 88899999999985443 44444 23 566777899999993
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.6e-10 Score=125.99 Aligned_cols=289 Identities=17% Similarity=0.211 Sum_probs=191.7
Q ss_pred EEEEEcC----CeEEEEEc--CCCeeE--EEEeCCCCCeEEEEEcCCCCEEEEEeC----CCeEEEEECCCC--e--EEE
Q 001472 73 VLAGAST----GVIKLWDL--EESKMV--RTLTGHKSNCTAVEFHPFGEFFASGCM----DTNLKIWDIRKK--G--CIH 136 (1072)
Q Consensus 73 LatGS~D----GsI~IWDl--~tgk~i--~tl~~h~~~VtsLafSPdg~~LaSgs~----DGsI~IWDlrtg--k--~v~ 136 (1072)
+++|++. +.|.+|++ .++++. ..+. .......++++|++++|+++.. +|.|..|++... . .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 5667766 68999988 455442 2222 3445677999999999999876 478999988764 3 333
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEe-cCCeEEEEECCC-CceEEE---ee--e--------cCCceEEEEEcCCCcEEEE
Q 001472 137 TYKGHTRGINTIRFTPDGRWVVSGG-FDNVVKVWDLTA-GKLLHD---FK--F--------HEGHIRSIDFHPLEFLLAT 201 (1072)
Q Consensus 137 ~l~~h~~~VtsLafSPDG~~LaTGS-~DGsI~IWDl~t-gk~i~~---~~--~--------h~g~ItsLafSPdg~lLaT 201 (1072)
...........++++|++++|+++. .+|.|.+|++.. |.+... +. + ......++.|+|++++|++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 3443455678999999999998887 489999999987 443222 21 0 1244789999999998887
Q ss_pred EEC-CCeEEEEECCCCc--E--EEee-CCCCCCeEEEEEeCCCCEEEEEE--CCcEEEEEec--CCee--ec---cccc-
Q 001472 202 GSA-DRTVKFWDLETFE--L--IGST-RPEVTGVHAITFHPDGRTLFSGF--DDNLKVYSWE--PVIC--HD---SVDM- 265 (1072)
Q Consensus 202 gS~-DGtIrIWDl~tge--~--i~~~-~~h~~~VtsIafSPDG~~LasGs--dg~I~Vwd~~--s~~~--~~---~l~~- 265 (1072)
... ...|++|++.... . ...+ .....+.+.++|+|+|+++++.. ++.|.+|++. .+.. .. .+..
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 653 4579999997654 2 1222 24456789999999999998865 4569999988 3322 11 1211
Q ss_pred ---CCCeeeeEEecCCCEEEEEE-cCCeEEEEEcCC--CceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCc
Q 001472 266 ---GWSTLGDLCINDGKLLGCSF-YRNSVGIWVADV--SHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTS 339 (1072)
Q Consensus 266 ---~~s~i~~l~spDGk~LAsgs-~DGsVrIWDlds--~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG 339 (1072)
........+++||++|+++. ..+.|.+|+++. +.+...... .........++|+|||+. +....+..+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~--~~~G~~Pr~~~~s~~g~~----l~Va~~~s~ 314 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV--PTGGKFPRHFAFSPDGRY----LYVANQDSN 314 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE--EESSSSEEEEEE-TTSSE----EEEEETTTT
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE--eCCCCCccEEEEeCCCCE----EEEEecCCC
Confidence 12455677889999988877 457899999943 345444321 122455899999999994 444556666
Q ss_pred ceEEeecCCcccceEEEeecCCCCcccee
Q 001472 340 GFRSTSPDYETKDIKTIYVDSTGGKPVAS 368 (1072)
Q Consensus 340 ~~r~ivpD~et~eI~~i~iDs~gGepv~~ 368 (1072)
.+..+-.|.++|.+......-..++|+.+
T Consensus 315 ~v~vf~~d~~tG~l~~~~~~~~~~~p~ci 343 (345)
T PF10282_consen 315 TVSVFDIDPDTGKLTPVGSSVPIPSPVCI 343 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESSSEEEE
T ss_pred eEEEEEEeCCCCcEEEecccccCCCCEEE
Confidence 67777778788888887643336666543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=148.46 Aligned_cols=288 Identities=17% Similarity=0.236 Sum_probs=216.2
Q ss_pred eEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEe-eCCCCCeEEEEEcC--CCCEEEEEEcCCeEE
Q 001472 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSL-CGLSSPVDSVAFDS--AEVLVLAGASTGVIK 83 (1072)
Q Consensus 7 ~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl-~~hs~~ItsLafSP--dG~~LatGS~DGsI~ 83 (1072)
....|..|.|.|..+.|...| ..|++|+.|..|.+||+..+.....+ .+|...|....|-| +...|++++.||.++
T Consensus 134 l~~kL~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhcccCCCCccceeeecccC-ceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 345688999999999999999 89999999999999999887766655 67888898888988 456899999999999
Q ss_pred EEEcCC-Cee--EEEEeCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEE---ecCCC---CeEEEEEcCC
Q 001472 84 LWDLEE-SKM--VRTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKKGCIHTY---KGHTR---GINTIRFTPD 153 (1072)
Q Consensus 84 IWDl~t-gk~--i~tl~~h~~~VtsLafSPdg~-~LaSgs~DGsI~IWDlrtgk~v~~l---~~h~~---~VtsLafSPD 153 (1072)
+=.+.. +.+ ...+..|.+.|.-++.-|+.. .|.+++.|+.+.-+|++.+.....+ ..+.. ....++..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 877643 222 345567999999999999764 6889999999999999887644333 22223 5678899985
Q ss_pred CC-EEEEEecCCeEEEEECCCCce------EEEee------ecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCc---
Q 001472 154 GR-WVVSGGFDNVVKVWDLTAGKL------LHDFK------FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE--- 217 (1072)
Q Consensus 154 G~-~LaTGS~DGsI~IWDl~tgk~------i~~~~------~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge--- 217 (1072)
.. ++++|+.|-.+++||.+.-.. +..|. ...-.|++++|+.++.-|+++..|-.|++|.-..+.
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 44 889999999999999865322 22222 223459999999888777778888999999543221
Q ss_pred ---------EEEe-eCCCCC--CeEEEEE-eCCCCEEEEEECCc-EEEEEecCCeeecccccCCCeeeeEEe-cCCCEEE
Q 001472 218 ---------LIGS-TRPEVT--GVHAITF-HPDGRTLFSGFDDN-LKVYSWEPVICHDSVDMGWSTLGDLCI-NDGKLLG 282 (1072)
Q Consensus 218 ---------~i~~-~~~h~~--~VtsIaf-SPDG~~LasGsdg~-I~Vwd~~s~~~~~~l~~~~s~i~~l~s-pDGk~LA 282 (1072)
.+.. +++|.. .|..+-| -|...|+++|+|.+ |.||+-.+...+..+.....++.++-. |---+||
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLA 452 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLA 452 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhh
Confidence 1222 445432 3666654 57789999998865 777877777777777766665555443 5667899
Q ss_pred EEEcCCeEEEEEc
Q 001472 283 CSFYRNSVGIWVA 295 (1072)
Q Consensus 283 sgs~DGsVrIWDl 295 (1072)
+++-|..|+||--
T Consensus 453 sSGid~DVKIWTP 465 (559)
T KOG1334|consen 453 SSGIDHDVKIWTP 465 (559)
T ss_pred ccCCccceeeecC
Confidence 9999999999954
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-11 Score=147.24 Aligned_cols=265 Identities=13% Similarity=0.240 Sum_probs=185.5
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCC---CCCeEEEEEcC--CCCEEEEEeCCCeEEEEECC-C--
Q 001472 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGH---KSNCTAVEFHP--FGEFFASGCMDTNLKIWDIR-K-- 131 (1072)
Q Consensus 60 ~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h---~~~VtsLafSP--dg~~LaSgs~DGsI~IWDlr-t-- 131 (1072)
+...+.|+|-...++++...-.|.|||++.++.+..+..+ ...|+.+++-. |..++++|+.||.|+||+-- .
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 4567889998888999887789999999999988777644 35688888865 34589999999999999632 2
Q ss_pred --CeEEEEEec-------CCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeec-CCceEEEEEcC-CCcEEE
Q 001472 132 --KGCIHTYKG-------HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH-EGHIRSIDFHP-LEFLLA 200 (1072)
Q Consensus 132 --gk~v~~l~~-------h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h-~g~ItsLafSP-dg~lLa 200 (1072)
.+.+..+.+ ..+.-.-+.|.....+|+++|.-..|+|||......+..+... ...++++.-+- .|+.++
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence 223333321 1111245678776667777777889999999988877776633 34466665443 479999
Q ss_pred EEECCCeEEEEECCCCc---EEEeeCCCCCC--eEEEEEeCCCCE-EEEE-ECCcEEEEEecCCeee--cccccCC--C-
Q 001472 201 TGSADRTVKFWDLETFE---LIGSTRPEVTG--VHAITFHPDGRT-LFSG-FDDNLKVYSWEPVICH--DSVDMGW--S- 268 (1072)
Q Consensus 201 TgS~DGtIrIWDl~tge---~i~~~~~h~~~--VtsIafSPDG~~-LasG-sdg~I~Vwd~~s~~~~--~~l~~~~--s- 268 (1072)
.|..||.|++||.+... .+...+.|... |..+.+.+.|-- |++| .+|.|++||++..... ..+..+| .
T Consensus 1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs 1305 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGS 1305 (1387)
T ss_pred EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCc
Confidence 99999999999988643 35555666655 999999886643 6665 6778999999874221 1223333 2
Q ss_pred -eeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeec--CCCCCCCCCeeEEEECCCCC
Q 001472 269 -TLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGV--GAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 269 -~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v--~~~~~~~~~ItsVaFSPDGs 325 (1072)
........+..++|+|+. +.|.||++.+..+..+.. +......+.+.|++|+|.--
T Consensus 1306 ~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~ 1364 (1387)
T KOG1517|consen 1306 ALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRL 1364 (1387)
T ss_pred cceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhH
Confidence 233334467788999987 999999998766543321 11134467789999999655
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-11 Score=151.04 Aligned_cols=260 Identities=18% Similarity=0.234 Sum_probs=184.7
Q ss_pred EECCCCceEEEeeCCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEEcCCC-------eeEEEEeCCCCCeEEEEEcCCCCE
Q 001472 43 WAIGKPTALMSLCGLSSPVDSVAFDSAE-VLVLAGASTGVIKLWDLEES-------KMVRTLTGHKSNCTAVEFHPFGEF 114 (1072)
Q Consensus 43 WDl~t~~~l~sl~~hs~~ItsLafSPdG-~~LatGS~DGsI~IWDl~tg-------k~i~tl~~h~~~VtsLafSPdg~~ 114 (1072)
|+. .|..+..+..|...+..++.++.. .++++|+.||+|++|+...- +...++......+.++.+.+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 543 567788888999999998888754 99999999999999998631 122333335678999999999999
Q ss_pred EEEEeCCCeEEEEECCCC--e-----EEEEEecC--CCCeEEEEEcC-CCC-EEEEEecCCeEEEEECCCCceEEEee--
Q 001472 115 FASGCMDTNLKIWDIRKK--G-----CIHTYKGH--TRGINTIRFTP-DGR-WVVSGGFDNVVKVWDLTAGKLLHDFK-- 181 (1072)
Q Consensus 115 LaSgs~DGsI~IWDlrtg--k-----~v~~l~~h--~~~VtsLafSP-DG~-~LaTGS~DGsI~IWDl~tgk~i~~~~-- 181 (1072)
+|+++.||.|.+.++... . +......+ +.-+..-+|.. .+. .|+.+...+.|..||+++....+.++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999998752 1 11111112 22233334443 233 67888889999999999877655544
Q ss_pred ecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEee-CCCCCCeEEEEEeCCC---CEEEEEE---CCcEEEEEe
Q 001472 182 FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGST-RPEVTGVHAITFHPDG---RTLFSGF---DDNLKVYSW 254 (1072)
Q Consensus 182 ~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~-~~h~~~VtsIafSPDG---~~LasGs---dg~I~Vwd~ 254 (1072)
...|.|++++.+|.++++++|+..|.+.+||++-+.++... .++..+++.+..+|-. .+.++++ .+.+.+|++
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 34688999999999999999999999999999977776554 3445778888877643 4555443 345999999
Q ss_pred cCCeeecccccC------------------CCeeeeEE-e-cCCCEEEEEEcCCeEEEEEcCCCceeee
Q 001472 255 EPVICHDSVDMG------------------WSTLGDLC-I-NDGKLLGCSFYRNSVGIWVADVSHVEPY 303 (1072)
Q Consensus 255 ~s~~~~~~l~~~------------------~s~i~~l~-s-pDGk~LAsgs~DGsVrIWDlds~~l~~~ 303 (1072)
.++.+...+-.. ....+..+ . ..+.++.+|+.|+.|+.||........+
T Consensus 1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~ 1341 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSY 1341 (1431)
T ss_pred ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccc
Confidence 988776554222 00111111 1 2456888999999999999876555444
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.7e-11 Score=136.04 Aligned_cols=214 Identities=14% Similarity=0.107 Sum_probs=145.1
Q ss_pred CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 001472 80 GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD---TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW 156 (1072)
Q Consensus 80 GsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~D---GsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~ 156 (1072)
..|.++|...+. .+.+..+...+....|+|+|++|+.+..+ ..|++||+.++..... ..+...+.+++|+|||+.
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 368888876444 34455567778899999999999887654 4799999988765433 334455678999999997
Q ss_pred EEEE-ecCC--eEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECC-C--eEEEEECCCCcEEEeeCCCCCCeE
Q 001472 157 VVSG-GFDN--VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSAD-R--TVKFWDLETFELIGSTRPEVTGVH 230 (1072)
Q Consensus 157 LaTG-S~DG--sI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~D-G--tIrIWDl~tge~i~~~~~h~~~Vt 230 (1072)
|+.. +.++ .|++||+.++.... +..+........|+|+|..|+..+.. + .|++||+.+++.. .+..+...+.
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 7654 4343 59999998776433 33344445677899999988776543 3 6888898876643 3333445577
Q ss_pred EEEEeCCCCEEEEEECC----cEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCC---eEEEEEcCCC
Q 001472 231 AITFHPDGRTLFSGFDD----NLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRN---SVGIWVADVS 298 (1072)
Q Consensus 231 sIafSPDG~~LasGsdg----~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DG---sVrIWDlds~ 298 (1072)
.+.|+|+|++|+.+..+ .|.+|++....... +..........+++||++|+.++.++ .+.+.+.+..
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 88999999999886543 47777776643322 22222334457889999888777654 3445554443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.8e-11 Score=138.26 Aligned_cols=227 Identities=11% Similarity=0.039 Sum_probs=152.7
Q ss_pred cCceEEEEecCCCCeEEEEEecCCCcEEEEEECC--CeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEE-EcCC
Q 001472 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDD--QKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAG-ASTG 80 (1072)
Q Consensus 4 tGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~D--GtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatG-S~DG 80 (1072)
.|...+.+..|...+....|+|||..++++...+ ..|.+|++.++.... +....+.+....|+|+|+.|+.. ..+|
T Consensus 187 ~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g 265 (430)
T PRK00178 187 DGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDG 265 (430)
T ss_pred CCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCC
Confidence 4555667778888899999999994444444333 368899998775433 33334455679999999988754 3444
Q ss_pred --eEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 001472 81 --VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM-D--TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR 155 (1072)
Q Consensus 81 --sI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~-D--GsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~ 155 (1072)
.|++||+.+++.. .+..+........|+|||+.|+..+. + ..|++||+.+++...... .........|+|||+
T Consensus 266 ~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~Spdg~ 343 (430)
T PRK00178 266 NPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRLSADGK 343 (430)
T ss_pred CceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccceEECCCCC
Confidence 6888999887654 34545556677899999998877654 2 368888988776433222 223345678999999
Q ss_pred EEEEEecC-C--eEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECC---CeEEEEECCCCcEEEeeCCCCCCe
Q 001472 156 WVVSGGFD-N--VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSAD---RTVKFWDLETFELIGSTRPEVTGV 229 (1072)
Q Consensus 156 ~LaTGS~D-G--sI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~D---GtIrIWDl~tge~i~~~~~h~~~V 229 (1072)
+|+..+.+ + .|.+||+.+++...... ........|+|+|..++..+.+ ..|+++++.. .....+..+.+.+
T Consensus 344 ~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~g~~ 420 (430)
T PRK00178 344 TLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQGEV 420 (430)
T ss_pred EEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCCCCc
Confidence 99887643 2 58899998876533222 2223356899999988877653 3577778753 3333444444556
Q ss_pred EEEEEeC
Q 001472 230 HAITFHP 236 (1072)
Q Consensus 230 tsIafSP 236 (1072)
...+|+|
T Consensus 421 ~~p~ws~ 427 (430)
T PRK00178 421 REPSWSP 427 (430)
T ss_pred CCCccCC
Confidence 7777776
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-10 Score=135.43 Aligned_cols=233 Identities=12% Similarity=0.021 Sum_probs=154.1
Q ss_pred eEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 001472 81 VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD---TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWV 157 (1072)
Q Consensus 81 sI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~D---GsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~L 157 (1072)
.|.++|...+.. ..+..+...+....|+|||++|+..+.+ ..|++||+.++.... +....+.+....|+|||++|
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 488888875544 4455567788999999999998876543 469999998886543 33233445678999999988
Q ss_pred EE-EecCC--eEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEEC-C--CeEEEEECCCCcEEEeeCCCCCCeEE
Q 001472 158 VS-GGFDN--VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA-D--RTVKFWDLETFELIGSTRPEVTGVHA 231 (1072)
Q Consensus 158 aT-GS~DG--sI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~-D--GtIrIWDl~tge~i~~~~~h~~~Vts 231 (1072)
+. .+.+| .|++||+.+++... +..+........|+|||+.|+..+. + ..|++||+.+++..... ........
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~ 335 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNAR 335 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccc
Confidence 75 44444 68899998876543 4444555667899999998776654 3 35888888877643322 12223456
Q ss_pred EEEeCCCCEEEEEEC--C--cEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcC-C--eEEEEEcCCCceeeee
Q 001472 232 ITFHPDGRTLFSGFD--D--NLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYR-N--SVGIWVADVSHVEPYG 304 (1072)
Q Consensus 232 IafSPDG~~LasGsd--g--~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~D-G--sVrIWDlds~~l~~~~ 304 (1072)
..|+|||++|+.... + .|.+||+..+........ .......++|||++++.++.+ | .|.+++++......+.
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~-~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT-SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 789999999987643 2 377788776654333222 233356788999988776643 3 4566666544332322
Q ss_pred cCCCCCCCCCeeEEEECCC
Q 001472 305 VGAPEPDQSICTEVKFNPP 323 (1072)
Q Consensus 305 v~~~~~~~~~ItsVaFSPD 323 (1072)
...+.+...+|||.
T Consensus 415 -----~~~g~~~~p~ws~~ 428 (430)
T PRK00178 415 -----TAQGEVREPSWSPY 428 (430)
T ss_pred -----CCCCCcCCCccCCC
Confidence 23445677888883
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-10 Score=135.47 Aligned_cols=224 Identities=13% Similarity=0.085 Sum_probs=152.7
Q ss_pred cCceEEEEecCCCCeEEEEEecCCCcEEEEEECC---CeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEE-EcC
Q 001472 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDD---QKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAG-AST 79 (1072)
Q Consensus 4 tGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~D---GtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatG-S~D 79 (1072)
.|...+.+..+...+.+.+|+||| ++|+.+..+ ..|++||+.++.... +..+...+.+++|+|+|+.|+.. +.+
T Consensus 178 ~g~~~~~l~~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~ 255 (417)
T TIGR02800 178 DGANPQTITRSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKD 255 (417)
T ss_pred CCCCCEEeecCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCC
Confidence 345566777787889999999999 555555433 479999998775433 33455567789999999987754 333
Q ss_pred C--eEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCC
Q 001472 80 G--VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD-T--NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDG 154 (1072)
Q Consensus 80 G--sI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~D-G--sI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG 154 (1072)
+ .|++||+.++.... +..+........|+|+|++|+.++.. | .|++||+.+++.. .+..+......+.|+|+|
T Consensus 256 ~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg 333 (417)
T TIGR02800 256 GNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDG 333 (417)
T ss_pred CCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCC
Confidence 3 59999998776433 44455555678999999988776543 2 6888898876643 344345567788999999
Q ss_pred CEEEEEecCC---eEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCC---eEEEEECCCCcEEEeeCCCCCC
Q 001472 155 RWVVSGGFDN---VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADR---TVKFWDLETFELIGSTRPEVTG 228 (1072)
Q Consensus 155 ~~LaTGS~DG---sI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DG---tIrIWDl~tge~i~~~~~h~~~ 228 (1072)
++|+.++.++ .|.+||+.++.... +.. ........|+|+|..|+..+.++ .+++++.. +.....+....+.
T Consensus 334 ~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~ 410 (417)
T TIGR02800 334 DLIAFVHREGGGFNIAVMDLDGGGERV-LTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGD 410 (417)
T ss_pred CEEEEEEccCCceEEEEEeCCCCCeEE-ccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCC
Confidence 9999888776 89999998765432 221 22345568999999888877654 35565544 4444444443444
Q ss_pred eEEEEE
Q 001472 229 VHAITF 234 (1072)
Q Consensus 229 VtsIaf 234 (1072)
+..++|
T Consensus 411 ~~~~~w 416 (417)
T TIGR02800 411 VREPAW 416 (417)
T ss_pred cCCCCC
Confidence 444444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=132.90 Aligned_cols=280 Identities=20% Similarity=0.255 Sum_probs=180.7
Q ss_pred ceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEe-CCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 001472 49 TALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT-GHKSNCTAVEFHPFGEFFASGCMDTNLKIW 127 (1072)
Q Consensus 49 ~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~-~h~~~VtsLafSPdg~~LaSgs~DGsI~IW 127 (1072)
.+...+..|...++++.|-.+++ |++|...|.|++|++++......+. .+...|+.+.--|+ ..+.+-+.|+.+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 34567778999999999988776 8899999999999999988877777 56778888888887 557888899999999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEcC-----CCC----EEEEEecCC-eEEEEECCCCceEEEee----ecCCceEEEEEc
Q 001472 128 DIRKKGCIHTYKGHTRGINTIRFTP-----DGR----WVVSGGFDN-VVKVWDLTAGKLLHDFK----FHEGHIRSIDFH 193 (1072)
Q Consensus 128 Dlrtgk~v~~l~~h~~~VtsLafSP-----DG~----~LaTGS~DG-sI~IWDl~tgk~i~~~~----~h~g~ItsLafS 193 (1072)
++..+..+.. |.-.+.++-|.+ .++ .++.-++.. .+.+-|......+.... ...+.+.+..|.
T Consensus 83 ~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 83 TIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred EccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 9987554322 222233333332 221 222211111 12233332222222211 234566666654
Q ss_pred CC-C--cEEEEEECCCeEEEEECCCCcEE----------EeeCCCCCCeEEEEEeCCCCEEEE-EECCcEEEEEecCC--
Q 001472 194 PL-E--FLLATGSADRTVKFWDLETFELI----------GSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWEPV-- 257 (1072)
Q Consensus 194 Pd-g--~lLaTgS~DGtIrIWDl~tge~i----------~~~~~h~~~VtsIafSPDG~~Las-Gsdg~I~Vwd~~s~-- 257 (1072)
.. + -+|+.|..+|.+.+||+.++..+ .....|..+|.++.|.+.-..=++ |.++.+..|+++..
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 32 2 46777888999999999987433 334557788999998864322233 34556788887643
Q ss_pred eee--cccccCC-CeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEE
Q 001472 258 ICH--DSVDMGW-STLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGII 334 (1072)
Q Consensus 258 ~~~--~~l~~~~-s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~Vlai 334 (1072)
.+. ....... .......-+|++++|++++|+.|+||... .+.++.+. ..|...|.+++|+||.. +.+.
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr--tl~pLAVL--kyHsagvn~vAfspd~~-----lmAa 310 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR--TLNPLAVL--KYHSAGVNAVAFSPDCE-----LMAA 310 (323)
T ss_pred cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEec--cCCchhhh--hhhhcceeEEEeCCCCc-----hhhh
Confidence 211 1111222 22333444899999999999999999765 44455432 57889999999999866 5555
Q ss_pred eccCcceE
Q 001472 335 GRSTSGFR 342 (1072)
Q Consensus 335 G~stG~~r 342 (1072)
+..++.+.
T Consensus 311 askD~rIS 318 (323)
T KOG0322|consen 311 ASKDARIS 318 (323)
T ss_pred ccCCceEE
Confidence 55555433
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.3e-11 Score=134.67 Aligned_cols=221 Identities=23% Similarity=0.317 Sum_probs=169.9
Q ss_pred ecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCc----eEEEeeCCCCCeEEEEEcCCCCE-EEEEEcC--CeEEE
Q 001472 12 VAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT----ALMSLCGLSSPVDSVAFDSAEVL-VLAGAST--GVIKL 84 (1072)
Q Consensus 12 ~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~----~l~sl~~hs~~ItsLafSPdG~~-LatGS~D--GsI~I 84 (1072)
.+.++.|..++... ..|++|-.+|.+.+|....+. .+..+.. ..++..+.-++...+ +++|+.. ..+.|
T Consensus 102 ~l~~~~I~gl~~~d---g~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lki 177 (412)
T KOG3881|consen 102 SLGTKSIKGLKLAD---GTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKI 177 (412)
T ss_pred ccccccccchhhcC---CEEEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceee
Confidence 34445555555543 268889999999999986332 3333333 255667777775554 5558887 78999
Q ss_pred EEcCCCeeEEEEeCCC---------CCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCC-eEEEEEecCCCCeEEEEEcC
Q 001472 85 WDLEESKMVRTLTGHK---------SNCTAVEFHPF--GEFFASGCMDTNLKIWDIRKK-GCIHTYKGHTRGINTIRFTP 152 (1072)
Q Consensus 85 WDl~tgk~i~tl~~h~---------~~VtsLafSPd--g~~LaSgs~DGsI~IWDlrtg-k~v~~l~~h~~~VtsLafSP 152 (1072)
||++..+.+..-+.-. -.++++.|.+. ...|++++.-+++++||.+.+ .++..+.....+++++...|
T Consensus 178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p 257 (412)
T KOG3881|consen 178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP 257 (412)
T ss_pred eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC
Confidence 9999887766544322 23678889887 779999999999999999865 46777777778999999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEE-eeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEE
Q 001472 153 DGRWVVSGGFDNVVKVWDLTAGKLLHD-FKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHA 231 (1072)
Q Consensus 153 DG~~LaTGS~DGsI~IWDl~tgk~i~~-~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~Vts 231 (1072)
+|+++++|..-|.+..||++.++.... +++..|.|.++..+|.+.+|++++-|..|+|+|+.+.+.+...... ..+++
T Consensus 258 ~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK-s~lt~ 336 (412)
T KOG3881|consen 258 SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK-SRLTF 336 (412)
T ss_pred CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh-ccccE
Confidence 999999999999999999999998876 8888999999999999999999999999999999996665543322 33555
Q ss_pred EEEeCC
Q 001472 232 ITFHPD 237 (1072)
Q Consensus 232 IafSPD 237 (1072)
|.+.++
T Consensus 337 il~~~~ 342 (412)
T KOG3881|consen 337 ILLRDD 342 (412)
T ss_pred EEecCC
Confidence 555443
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.9e-11 Score=125.07 Aligned_cols=155 Identities=25% Similarity=0.469 Sum_probs=115.3
Q ss_pred EEEEEcCCCCEEEEEEc----------CCeEEEEEcCC-CeeEEEEeC-CCCCeEEEEEcCCCCEEEEEe--CCCeEEEE
Q 001472 62 DSVAFDSAEVLVLAGAS----------TGVIKLWDLEE-SKMVRTLTG-HKSNCTAVEFHPFGEFFASGC--MDTNLKIW 127 (1072)
Q Consensus 62 tsLafSPdG~~LatGS~----------DGsI~IWDl~t-gk~i~tl~~-h~~~VtsLafSPdg~~LaSgs--~DGsI~IW 127 (1072)
..+.|+++|.+|++-.. -|...+|.++. +.....+.- ..++|.+++|+|+|+.|++.. .++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46889999988876543 13455555522 233444432 345799999999999876653 56789999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEec---CCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEEC
Q 001472 128 DIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF---DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA 204 (1072)
Q Consensus 128 Dlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~---DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~ 204 (1072)
|++ ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||+++.+.+..+. | ..+..++|+|+|++|+++..
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 996 66666664 456789999999999999875 4679999999888887765 3 34789999999999999874
Q ss_pred ------CCeEEEEECCCCcEEEee
Q 001472 205 ------DRTVKFWDLETFELIGST 222 (1072)
Q Consensus 205 ------DGtIrIWDl~tge~i~~~ 222 (1072)
|..++||++. |+.+...
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ccceeccccEEEEEec-CeEeEec
Confidence 6788999985 6655443
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-10 Score=133.59 Aligned_cols=239 Identities=12% Similarity=0.003 Sum_probs=154.0
Q ss_pred CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCE--E-EEEeCC--CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC
Q 001472 80 GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEF--F-ASGCMD--TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDG 154 (1072)
Q Consensus 80 GsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~--L-aSgs~D--GsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG 154 (1072)
+.|.+.|...+.. +.+......+....|+|||+. + ++...+ ..|++.++..++.... ....+......|+|||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCC
Confidence 4688888866554 335445666788899999975 2 234333 4688889987764333 2234445678999999
Q ss_pred CEEEEEec-----CCeEEEEECCCC---ceEEEeeecCCceEEEEEcCCCcEEEEEE-CCCe--EEEEECCC-CcEEEee
Q 001472 155 RWVVSGGF-----DNVVKVWDLTAG---KLLHDFKFHEGHIRSIDFHPLEFLLATGS-ADRT--VKFWDLET-FELIGST 222 (1072)
Q Consensus 155 ~~LaTGS~-----DGsI~IWDl~tg---k~i~~~~~h~g~ItsLafSPdg~lLaTgS-~DGt--IrIWDl~t-ge~i~~~ 222 (1072)
+.|+..+. +..+.+|++..+ ..........+.....+|+|||+.|+..+ .+|. |+++++.. +.....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 98887653 223445777653 33333322233456789999999877665 4564 55555542 2233334
Q ss_pred CCCCCCeEEEEEeCCCCEEEEEEC----CcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEc---CCeEEEEEc
Q 001472 223 RPEVTGVHAITFHPDGRTLFSGFD----DNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFY---RNSVGIWVA 295 (1072)
Q Consensus 223 ~~h~~~VtsIafSPDG~~LasGsd----g~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~---DGsVrIWDl 295 (1072)
......+....|+|||++|+.... ..|.+|++..+................|++||++|+.... .+.|.+|++
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 444456778999999999987543 2488899887766554433334456778899998876543 356888888
Q ss_pred CCCceeeeecCCCCCCCCCeeEEEECCCCC
Q 001472 296 DVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 296 ds~~l~~~~v~~~~~~~~~ItsVaFSPDGs 325 (1072)
+.+....+. ...+.+...+|+|.+.
T Consensus 403 ~~g~~~~Lt-----~~~g~~~~p~Ws~~~~ 427 (428)
T PRK01029 403 ITKKTRKIV-----IGSGEKRFPSWGAFPS 427 (428)
T ss_pred CCCCEEEee-----cCCCcccCceecCCCC
Confidence 877665553 2334567789999764
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-10 Score=134.55 Aligned_cols=231 Identities=15% Similarity=0.091 Sum_probs=150.8
Q ss_pred CceEEEEecCCCCeEEEEEecCCCc--EEEEEECCC--eEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEc-C
Q 001472 5 GYKLQEFVAHSANVNCISIGKKACR--FLITGGDDQ--KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS-T 79 (1072)
Q Consensus 5 Gk~I~~L~gHsg~Vt~IafSPdg~~--lLaTGs~DG--tV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~-D 79 (1072)
|...+.+..+...+.+-.|+|||.. ++++...+| .|.+.++.+++... +....+.....+|+|||+.|+..+. +
T Consensus 174 G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~ 252 (428)
T PRK01029 174 GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRY 252 (428)
T ss_pred CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCC
Confidence 4445556556667778899999955 334555554 47777887665433 3334455567899999998887653 2
Q ss_pred C----eEEEEEcCCC---eeEEEEeCCCCCeEEEEEcCCCCEEEEEe-CCCe--EEEEECCC-CeEEEEEecCCCCeEEE
Q 001472 80 G----VIKLWDLEES---KMVRTLTGHKSNCTAVEFHPFGEFFASGC-MDTN--LKIWDIRK-KGCIHTYKGHTRGINTI 148 (1072)
Q Consensus 80 G----sI~IWDl~tg---k~i~tl~~h~~~VtsLafSPdg~~LaSgs-~DGs--I~IWDlrt-gk~v~~l~~h~~~VtsL 148 (1072)
| .+.+|++..+ +.......+.......+|+|||+.|+..+ .+|. |+++++.. +.....+..+...+...
T Consensus 253 g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 253 GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence 2 3444776642 33333333334456789999999887765 3554 55555542 23344454444567789
Q ss_pred EEcCCCCEEEEEecC---CeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEEC---CCeEEEEECCCCcEEEee
Q 001472 149 RFTPDGRWVVSGGFD---NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA---DRTVKFWDLETFELIGST 222 (1072)
Q Consensus 149 afSPDG~~LaTGS~D---GsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~---DGtIrIWDl~tge~i~~~ 222 (1072)
.|+|||++|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+.... ...|++||+..++.....
T Consensus 333 ~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 333 AWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred eECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 999999998876643 479999999887654332 3445678999999998876543 356899999877654333
Q ss_pred CCCCCCeEEEEEeCCC
Q 001472 223 RPEVTGVHAITFHPDG 238 (1072)
Q Consensus 223 ~~h~~~VtsIafSPDG 238 (1072)
...+.+...+|+|-.
T Consensus 412 -~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 412 -IGSGEKRFPSWGAFP 426 (428)
T ss_pred -cCCCcccCceecCCC
Confidence 344556778888753
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=8e-11 Score=124.60 Aligned_cols=150 Identities=17% Similarity=0.385 Sum_probs=110.7
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEECCC-CeEEEEEec-CCCCeEEEEEcCCCCEEEEE--ecCCeEEEE
Q 001472 104 TAVEFHPFGEFFASGCM----------DTNLKIWDIRK-KGCIHTYKG-HTRGINTIRFTPDGRWVVSG--GFDNVVKVW 169 (1072)
Q Consensus 104 tsLafSPdg~~LaSgs~----------DGsI~IWDlrt-gk~v~~l~~-h~~~VtsLafSPDG~~LaTG--S~DGsI~IW 169 (1072)
..+.|+++|++|++-.. -|...+|.++. +..+..+.. ..++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45789999987766433 13344444422 223333432 34569999999999987654 456799999
Q ss_pred ECCCCceEEEeeecCCceEEEEEcCCCcEEEEEEC---CCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEE-
Q 001472 170 DLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA---DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF- 245 (1072)
Q Consensus 170 Dl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~---DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGs- 245 (1072)
|++ ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||..+.+.+..... ..+..++|+|||++|+++.
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEEEe
Confidence 996 66666664 567889999999999999874 46799999998888877643 3578999999999999863
Q ss_pred ------CCcEEEEEecCCe
Q 001472 246 ------DDNLKVYSWEPVI 258 (1072)
Q Consensus 246 ------dg~I~Vwd~~s~~ 258 (1072)
+++++||++....
T Consensus 164 ~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred ccceeccccEEEEEecCeE
Confidence 6779999986543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-10 Score=130.78 Aligned_cols=298 Identities=12% Similarity=0.146 Sum_probs=208.4
Q ss_pred CCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcC--------------
Q 001472 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAST-------------- 79 (1072)
Q Consensus 14 Hsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~D-------------- 79 (1072)
..-++..+.|||.| .+|++.... .|.+|+-.....+..+. ...|..+.|+|+++||.+-...
T Consensus 31 ~~~p~~~~~~SP~G-~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 31 ENWPVAYVSESPLG-TYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cCcchhheeecCcc-hheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 44578889999999 788776664 48999877666555554 3568999999999999996653
Q ss_pred -CeEEEEEcCCCeeEEEEeCCCCC--eE-EEEEcCCCCEEEEEeCCCeEEEEECCCCeE-EEEEec-CCCCeEEEEEcCC
Q 001472 80 -GVIKLWDLEESKMVRTLTGHKSN--CT-AVEFHPFGEFFASGCMDTNLKIWDIRKKGC-IHTYKG-HTRGINTIRFTPD 153 (1072)
Q Consensus 80 -GsI~IWDl~tgk~i~tl~~h~~~--Vt-sLafSPdg~~LaSgs~DGsI~IWDlrtgk~-v~~l~~-h~~~VtsLafSPD 153 (1072)
..+.+||+.+|..+..+.....+ .+ -+.|+-+.+++|-. ....++|+++ ++.. ...+.. ....|....|+|.
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence 35999999999999988876555 44 67888888877655 3456999997 3332 111211 1356888999995
Q ss_pred C--CEEEE-----EecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEE-----------CCCeEEEEECCC
Q 001472 154 G--RWVVS-----GGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS-----------ADRTVKFWDLET 215 (1072)
Q Consensus 154 G--~~LaT-----GS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS-----------~DGtIrIWDl~t 215 (1072)
+ ..|++ ++..+.+++|.+..+..+.+.......-..+.|++.|++|++-- ....++|+++..
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 3 34443 45678999999987777666554444456789999998876542 124688898885
Q ss_pred CcEEEeeCCCCCCeEEEEEeCCCCEEEEEE---CCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcC---Ce
Q 001472 216 FELIGSTRPEVTGVHAITFHPDGRTLFSGF---DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYR---NS 289 (1072)
Q Consensus 216 ge~i~~~~~h~~~VtsIafSPDG~~LasGs---dg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~D---Gs 289 (1072)
..+.... ...++|...+|.|.++.+++.+ ...+.+|+++....+ .+ ....-...+++|.+++++.++.| |.
T Consensus 265 ~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~-~~-Pe~~rNT~~fsp~~r~il~agF~nl~gn 341 (561)
T COG5354 265 RSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRF-YF-PEQKRNTIFFSPHERYILFAGFDNLQGN 341 (561)
T ss_pred cccceec-cccccceeeeecccCCceeEEecccccceeecccccceEE-ec-CCcccccccccCcccEEEEecCCccccc
Confidence 4443333 5568899999999988777643 345888888876322 22 22234456788999999887766 78
Q ss_pred EEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCC
Q 001472 290 VGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 290 VrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs 325 (1072)
+.+||........-. .......-+.|||||.
T Consensus 342 i~i~~~~~rf~~~~~-----~~~~n~s~~~wspd~q 372 (561)
T COG5354 342 IEIFDPAGRFKVAGA-----FNGLNTSYCDWSPDGQ 372 (561)
T ss_pred eEEeccCCceEEEEE-----eecCCceEeeccCCce
Confidence 999998755433322 1233455678999999
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.9e-12 Score=143.88 Aligned_cols=209 Identities=21% Similarity=0.400 Sum_probs=158.5
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEE-eCCCCCeEEEEEcC--CCCEEEEEeCCCeEEEE
Q 001472 51 LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTL-TGHKSNCTAVEFHP--FGEFFASGCMDTNLKIW 127 (1072)
Q Consensus 51 l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl-~~h~~~VtsLafSP--dg~~LaSgs~DGsI~IW 127 (1072)
-..+.+|.+.|.|+.|+.+|.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|-| +.+.+++|..|..|++|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3457899999999999999999999999999999999877777665 58999999999998 45689999999999999
Q ss_pred ECCCC----------eEEEEEecCCCCeEEEEEcCCC-CEEEEEecCCeEEEEECCCCce----------EEEeeecCCc
Q 001472 128 DIRKK----------GCIHTYKGHTRGINTIRFTPDG-RWVVSGGFDNVVKVWDLTAGKL----------LHDFKFHEGH 186 (1072)
Q Consensus 128 Dlrtg----------k~v~~l~~h~~~VtsLafSPDG-~~LaTGS~DGsI~IWDl~tgk~----------i~~~~~h~g~ 186 (1072)
|+... ...+.+..|...|..|+-.|++ ..+.++++||+|+-||++.... +..+...--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 99742 2345566788889999999988 7899999999999999986321 1111112234
Q ss_pred eEEEEEcCC-CcEEEEEECCCeEEEEECCC--------Cc----------EEEeeCC-CC-----------CCeEEEEEe
Q 001472 187 IRSIDFHPL-EFLLATGSADRTVKFWDLET--------FE----------LIGSTRP-EV-----------TGVHAITFH 235 (1072)
Q Consensus 187 ItsLafSPd-g~lLaTgS~DGtIrIWDl~t--------ge----------~i~~~~~-h~-----------~~VtsIafS 235 (1072)
..++.++|. ..+|++|+.|-..++||.+. +. ++..+.+ |. ..++-+.|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 678899995 57899999999999999532 11 1111111 10 125677899
Q ss_pred CCCCEEEEEEC-CcEEEEEecCCee
Q 001472 236 PDGRTLFSGFD-DNLKVYSWEPVIC 259 (1072)
Q Consensus 236 PDG~~LasGsd-g~I~Vwd~~s~~~ 259 (1072)
|+|.-|++... ..+++|++...+.
T Consensus 283 pNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred CCCcEEEEeeCCeEEEEEeecCCCC
Confidence 99988887644 4588888765543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.1e-10 Score=134.63 Aligned_cols=233 Identities=15% Similarity=0.071 Sum_probs=150.0
Q ss_pred eEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 001472 81 VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD---TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWV 157 (1072)
Q Consensus 81 sI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~D---GsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~L 157 (1072)
.|.++|...... +.+..+...+.+..|+|||++|+..+.+ ..|++||+.+++... +....+......|+|||+.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 677788765443 4455567788999999999988876543 369999998876433 22223334578999999988
Q ss_pred EE-EecCC--eEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEEC-CC--eEEEEECCCCcEEEeeCCCCCCeEE
Q 001472 158 VS-GGFDN--VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA-DR--TVKFWDLETFELIGSTRPEVTGVHA 231 (1072)
Q Consensus 158 aT-GS~DG--sI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~-DG--tIrIWDl~tge~i~~~~~h~~~Vts 231 (1072)
+. .+.+| .|++||+.+++.. .+..+.......+|+|||+.|+..+. +| .|+++|+.+++..... ........
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 75 45556 4888899877654 34434555678899999998877654 33 5777788777643322 12223446
Q ss_pred EEEeCCCCEEEEEEC--Cc--EEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcC-Ce--EEEEEcCCCceeeee
Q 001472 232 ITFHPDGRTLFSGFD--DN--LKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYR-NS--VGIWVADVSHVEPYG 304 (1072)
Q Consensus 232 IafSPDG~~LasGsd--g~--I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~D-Gs--VrIWDlds~~l~~~~ 304 (1072)
.+|+|||++|+.... +. |.++++..+....... ........++|||++|+....+ |. +.+++.+......+.
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~-~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS-TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 799999999987543 22 4556665554332222 2222345688999988766543 33 666676644333332
Q ss_pred cCCCCCCCCCeeEEEECCC
Q 001472 305 VGAPEPDQSICTEVKFNPP 323 (1072)
Q Consensus 305 v~~~~~~~~~ItsVaFSPD 323 (1072)
...+.+..++|||.
T Consensus 434 -----~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 434 -----AGQGEVKSPAWSPF 447 (448)
T ss_pred -----CCCCCcCCCccCCC
Confidence 23456778899983
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-10 Score=130.46 Aligned_cols=245 Identities=17% Similarity=0.230 Sum_probs=185.6
Q ss_pred CCCeEEEEEecCCCcEEEEEE-CCCeEEEEECCCCceEEEe------eCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001472 15 SANVNCISIGKKACRFLITGG-DDQKVNLWAIGKPTALMSL------CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87 (1072)
Q Consensus 15 sg~Vt~IafSPdg~~lLaTGs-~DGtV~IWDl~t~~~l~sl------~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl 87 (1072)
...|..++|.-++..-++.+. .|..+..+.+........+ .....+|..++.. ...|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 456778888877755555554 6667777777655443332 3345566666653 336777788999999998
Q ss_pred CCCe----eEEEEeCCCCCeEEEEEcCCCCE-EEEEeCC--CeEEEEECCCCeEEEEEecCC---------CCeEEEEEc
Q 001472 88 EESK----MVRTLTGHKSNCTAVEFHPFGEF-FASGCMD--TNLKIWDIRKKGCIHTYKGHT---------RGINTIRFT 151 (1072)
Q Consensus 88 ~tgk----~i~tl~~h~~~VtsLafSPdg~~-LaSgs~D--GsI~IWDlrtgk~v~~l~~h~---------~~VtsLafS 151 (1072)
..+. .+..+.. ...+..+.-++...+ +++|+.. ..+.|||+...+.++.-+.-. -.++.+.|.
T Consensus 133 k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred cCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 7432 2233332 345667777776554 5558877 789999999886665544221 246788898
Q ss_pred CC--CCEEEEEecCCeEEEEECCCC-ceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEe-eCCCCC
Q 001472 152 PD--GRWVVSGGFDNVVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS-TRPEVT 227 (1072)
Q Consensus 152 PD--G~~LaTGS~DGsI~IWDl~tg-k~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~-~~~h~~ 227 (1072)
+. ...|++++.-+.+++||.+.+ +++..|.....+++++...|.++++++|..-|.+..||++.++.+.. +.+..+
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG 291 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG 291 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC
Confidence 87 789999999999999999876 57888888889999999999999999999999999999999998877 788889
Q ss_pred CeEEEEEeCCCCEEEEE-ECCcEEEEEecCCeeecc
Q 001472 228 GVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDS 262 (1072)
Q Consensus 228 ~VtsIafSPDG~~LasG-sdg~I~Vwd~~s~~~~~~ 262 (1072)
.|++|..+|.+++++++ -|..++|||.++......
T Consensus 292 sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 292 SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred CcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 99999999999999985 577899999998655443
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-10 Score=135.67 Aligned_cols=223 Identities=11% Similarity=0.065 Sum_probs=146.9
Q ss_pred EEEEecCCCCeEEEEEecCCCcEEEEEECCC--eEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEE-EcCC--eE
Q 001472 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQ--KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAG-ASTG--VI 82 (1072)
Q Consensus 8 I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DG--tV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatG-S~DG--sI 82 (1072)
.+.+..+...+.+..|+|||..++++...++ .|.+||+.+++... +...........|+|+|+.|+.. +.+| .|
T Consensus 210 ~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~I 288 (448)
T PRK04792 210 EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEI 288 (448)
T ss_pred ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEE
Confidence 3445556667889999999955444444444 58888987765432 32223344578999999988764 4556 48
Q ss_pred EEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 001472 83 KLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM-D--TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVS 159 (1072)
Q Consensus 83 ~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~-D--GsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaT 159 (1072)
++||+.+++.. .+..+........|+|||++|+..+. + ..|+++|+.+++.... ..........+|+|||++|+.
T Consensus 289 y~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~ 366 (448)
T PRK04792 289 YVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIM 366 (448)
T ss_pred EEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEE
Confidence 88898877654 34445556678899999998877654 2 3577888877764332 222223345799999999887
Q ss_pred EecC-C--eEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECC-C--eEEEEECCCCcEEEeeCCCCCCeEEEE
Q 001472 160 GGFD-N--VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSAD-R--TVKFWDLETFELIGSTRPEVTGVHAIT 233 (1072)
Q Consensus 160 GS~D-G--sI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~D-G--tIrIWDl~tge~i~~~~~h~~~VtsIa 233 (1072)
.+.+ + .|.++|+.+++... +... .......|+|+|..|+..+.+ | .+++++.. +.....+..+.+.+...+
T Consensus 367 ~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~ 443 (448)
T PRK04792 367 VNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQGEVKSPA 443 (448)
T ss_pred EEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCc
Confidence 6653 3 56778888876533 2211 122345899999988776543 3 37777874 555555655556677888
Q ss_pred EeC
Q 001472 234 FHP 236 (1072)
Q Consensus 234 fSP 236 (1072)
|+|
T Consensus 444 Wsp 446 (448)
T PRK04792 444 WSP 446 (448)
T ss_pred cCC
Confidence 886
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-11 Score=139.03 Aligned_cols=271 Identities=17% Similarity=0.242 Sum_probs=196.3
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEE-eCCCCCeEEEEEcCC--CCEEEEEeCCCeEEEE
Q 001472 51 LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTL-TGHKSNCTAVEFHPF--GEFFASGCMDTNLKIW 127 (1072)
Q Consensus 51 l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl-~~h~~~VtsLafSPd--g~~LaSgs~DGsI~IW 127 (1072)
...+..|.+.|..+.|+..|..|++|+.|..|.+|||..+.....+ .+|...|....|.|. ...+++++.||.+++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 3456789999999999999999999999999999999988766555 478888888889884 4578999999999988
Q ss_pred ECCCCeE---EEEEecCCCCeEEEEEcCCC-CEEEEEecCCeEEEEECCCCceEEEee---ecCC---ceEEEEEcCCC-
Q 001472 128 DIRKKGC---IHTYKGHTRGINTIRFTPDG-RWVVSGGFDNVVKVWDLTAGKLLHDFK---FHEG---HIRSIDFHPLE- 196 (1072)
Q Consensus 128 Dlrtgk~---v~~l~~h~~~VtsLafSPDG-~~LaTGS~DGsI~IWDl~tgk~i~~~~---~h~g---~ItsLafSPdg- 196 (1072)
.+..... ...+..|.++|..++.-|+. .-|.+++.|+.+.-+|++++.....+. .+.. ....++.+|..
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 7654332 23445688999999999865 468899999999999999876543332 2223 46788999855
Q ss_pred cEEEEEECCCeEEEEECCCCcE------EEeeCC------CCCCeEEEEEeCCCC-EEEEEECCcEEEEEecCCee----
Q 001472 197 FLLATGSADRTVKFWDLETFEL------IGSTRP------EVTGVHAITFHPDGR-TLFSGFDDNLKVYSWEPVIC---- 259 (1072)
Q Consensus 197 ~lLaTgS~DGtIrIWDl~tge~------i~~~~~------h~~~VtsIafSPDG~-~LasGsdg~I~Vwd~~s~~~---- 259 (1072)
..+++|+.|..+++||.+.... +..+.+ ....|++++|+.+|. +|++-.+..|++|.-..+..
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence 5899999999999999875332 233322 234699999997655 45555677788884322111
Q ss_pred ---------ecccccCC---Ceeee-EEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCC
Q 001472 260 ---------HDSVDMGW---STLGD-LCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 260 ---------~~~l~~~~---s~i~~-l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs 325 (1072)
...+..+. .+-++ +|-|...|+++|+..|.|.||+-.++.+..++ .+...-|+|+.=+|.--
T Consensus 375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M----egDr~VVNCLEpHP~~P 449 (559)
T KOG1334|consen 375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM----EGDRHVVNCLEPHPHLP 449 (559)
T ss_pred CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh----hcccceEeccCCCCCCc
Confidence 11122221 12222 33478899999999999999998777766665 34455888888888544
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.2e-11 Score=128.88 Aligned_cols=264 Identities=15% Similarity=0.223 Sum_probs=176.2
Q ss_pred cCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCe---EEEEEcCC
Q 001472 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGV---IKLWDLEE 89 (1072)
Q Consensus 13 gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGs---I~IWDl~t 89 (1072)
.-..++.++.|+|||..+|.+...|-.|.+|.+.+..... +.-.+..+..++|+++|++.+.++.... +.|.....
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence 3456899999999998888899999999999997765433 3334556689999999999998876422 22332233
Q ss_pred CeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEE
Q 001472 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW 169 (1072)
Q Consensus 90 gk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IW 169 (1072)
...++.+....-..+.+.|+|||..|++- |---.-.+..+. -+-++..++|+|.+++|++|+.|+.+++.
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~~laVw---------d~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGNWLAVW---------DNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCcEEEEe---------cchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhh
Confidence 44555666566677889999999887763 321111111222 23468889999999999999999988875
Q ss_pred ECCCCce------------------------------------------------------------EEEee------ec
Q 001472 170 DLTAGKL------------------------------------------------------------LHDFK------FH 183 (1072)
Q Consensus 170 Dl~tgk~------------------------------------------------------------i~~~~------~h 183 (1072)
+--+.+. +..++ ..
T Consensus 238 nh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnP 317 (447)
T KOG4497|consen 238 NHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNP 317 (447)
T ss_pred ceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCc
Confidence 4211000 00011 11
Q ss_pred CCceEEEEEcCCCcEEEEEEC--CCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECC-cEEEEEecCCeee
Q 001472 184 EGHIRSIDFHPLEFLLATGSA--DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD-NLKVYSWEPVICH 260 (1072)
Q Consensus 184 ~g~ItsLafSPdg~lLaTgS~--DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg-~I~Vwd~~s~~~~ 260 (1072)
...+.-++|++|..++++-.. -..+.+||+++.+....+ ....+|+...|+|....|+.+..+ .+++|......++
T Consensus 318 k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V 396 (447)
T KOG4497|consen 318 KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV 396 (447)
T ss_pred ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEE
Confidence 233667899999999887643 346999999986654333 345689999999998877775433 4566655554445
Q ss_pred cccccCCCeeeeEEecCCCEEEEEEcCC
Q 001472 261 DSVDMGWSTLGDLCINDGKLLGCSFYRN 288 (1072)
Q Consensus 261 ~~l~~~~s~i~~l~spDGk~LAsgs~DG 288 (1072)
..-..++.+....|.-+|..++..+.|.
T Consensus 397 ~vP~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 397 GVPKKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred ecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence 4444555665666666777777776664
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.7e-10 Score=127.35 Aligned_cols=298 Identities=13% Similarity=0.193 Sum_probs=206.9
Q ss_pred EEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEc-----------CCeEEEEEc
Q 001472 19 NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS-----------TGVIKLWDL 87 (1072)
Q Consensus 19 t~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~-----------DGsI~IWDl 87 (1072)
+-+.|||.| .||++-..-| |.+|--.+...++.+. | -.|.-+.|||+.+||++-+. ...++|||+
T Consensus 214 tyv~wSP~G-TYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 214 TYVRWSPKG-TYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeEEecCCc-eEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 467899999 8999988766 8899766555555554 3 35788999999999999653 257999999
Q ss_pred CCCeeEEEEeCCCC--C-eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEec--
Q 001472 88 EESKMVRTLTGHKS--N-CTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF-- 162 (1072)
Q Consensus 88 ~tgk~i~tl~~h~~--~-VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~-- 162 (1072)
.+|...+.+....+ . -.-+.||.|++|+|.-.. ..|.||+..+..++..-.-...+|....|+|.+.+||.=..
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 99998887765322 2 334689999999998766 45999997765444332334567899999999988876442
Q ss_pred ---CCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEEC-------CC---eEEEEECCCCcEEEeeCCCCCCe
Q 001472 163 ---DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA-------DR---TVKFWDLETFELIGSTRPEVTGV 229 (1072)
Q Consensus 163 ---DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~-------DG---tIrIWDl~tge~i~~~~~h~~~V 229 (1072)
-..+.+..+.+++.+.....+.-.=..|.|-.+|.+|+.--. .| .+.|+.++..............|
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v 448 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV 448 (698)
T ss_pred cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence 236778888888877776655544456788888888876421 11 34566555444322222334568
Q ss_pred EEEEEeCCCCEEEEEE----CCcEEEEEecCCe----eecccccCCCeeeeEEecCCCEEEEEE---cCCeEEEEEcCCC
Q 001472 230 HAITFHPDGRTLFSGF----DDNLKVYSWEPVI----CHDSVDMGWSTLGDLCINDGKLLGCSF---YRNSVGIWVADVS 298 (1072)
Q Consensus 230 tsIafSPDG~~LasGs----dg~I~Vwd~~s~~----~~~~l~~~~s~i~~l~spDGk~LAsgs---~DGsVrIWDlds~ 298 (1072)
...+|.|.|..+++-+ ..++.+|.++... .+..++. .......|+|.|++++.+. ..|.+.++|.+..
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a 527 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA 527 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCcEEEEEEecccccceEEEecchh
Confidence 8999999998888743 2358899887422 1222222 3445667889999887765 4688999998864
Q ss_pred ceeeeecCCCCCCCCCeeEEEECCCCCc
Q 001472 299 HVEPYGVGAPEPDQSICTEVKFNPPGSH 326 (1072)
Q Consensus 299 ~l~~~~v~~~~~~~~~ItsVaFSPDGs~ 326 (1072)
...... .+.....+.+.|-|.|++
T Consensus 528 ~~k~~~----~~eh~~at~veWDPtGRY 551 (698)
T KOG2314|consen 528 DLKDTA----SPEHFAATEVEWDPTGRY 551 (698)
T ss_pred hhhhcc----CccccccccceECCCCCE
Confidence 444443 244556778999999993
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-09 Score=119.14 Aligned_cols=174 Identities=17% Similarity=0.286 Sum_probs=133.8
Q ss_pred CeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcC-CCeeEEEEeCC--CCCeEEEEEcCCCCE
Q 001472 38 QKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE-ESKMVRTLTGH--KSNCTAVEFHPFGEF 114 (1072)
Q Consensus 38 GtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~-tgk~i~tl~~h--~~~VtsLafSPdg~~ 114 (1072)
..|.|||-.....+..+. ...+|.++.+.++ .|++.- .+.|+||... +-+.++.+... .....+++-+.+..+
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 469999976666676665 6789999999765 455543 5789999987 44555555422 223333333333344
Q ss_pred EEEE-eCCCeEEEEECCCCeE--EEEEecCCCCeEEEEEcCCCCEEEEEecCCe-EEEEECCCCceEEEeee--cCCceE
Q 001472 115 FASG-CMDTNLKIWDIRKKGC--IHTYKGHTRGINTIRFTPDGRWVVSGGFDNV-VKVWDLTAGKLLHDFKF--HEGHIR 188 (1072)
Q Consensus 115 LaSg-s~DGsI~IWDlrtgk~--v~~l~~h~~~VtsLafSPDG~~LaTGS~DGs-I~IWDl~tgk~i~~~~~--h~g~It 188 (1072)
||.- -.-|.|.|-|+...+. ...+.+|...|.|++++-+|..+|+++..|+ |+|||..+|+.+.++.. ....|.
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 5543 3459999999976654 4778899999999999999999999999886 79999999999999873 345699
Q ss_pred EEEEcCCCcEEEEEECCCeEEEEECCC
Q 001472 189 SIDFHPLEFLLATGSADRTVKFWDLET 215 (1072)
Q Consensus 189 sLafSPdg~lLaTgS~DGtIrIWDl~t 215 (1072)
+++|+|+..+|++++..|+|+||.++.
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 999999999999999999999998864
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-09 Score=125.88 Aligned_cols=300 Identities=14% Similarity=0.213 Sum_probs=192.7
Q ss_pred CCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEE-----c-----CCeEEEE
Q 001472 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGA-----S-----TGVIKLW 85 (1072)
Q Consensus 16 g~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS-----~-----DGsI~IW 85 (1072)
...+..+++++| ++++. +.+..+.|++......+..... ..++++.|+|.|.+|.+-- . .-.+.+|
T Consensus 35 ~~~~v~~~S~~G-~lfA~-~~~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 35 RPCNVFAYSNNG-RLFAY-SDNQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CcceeEEEcCCC-cEEEE-EcCCeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 346677888888 55554 4567899999987764433332 3789999999999988721 1 2357899
Q ss_pred EcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC--EEEE----
Q 001472 86 DLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR--WVVS---- 159 (1072)
Q Consensus 86 Dl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~--~LaT---- 159 (1072)
+++++.....+......-+++.|+.|..+.+- -..+.+++|++...+.+. -+-|...|..+.++|.+. .+++
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhhh-hhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccC
Confidence 99986655555433333368899988764333 235779999987744322 223567789999998633 3433
Q ss_pred -EecCCeEEEEECCCCce---EEEeeecCCceEEEEEcCCCcE-EEEEE--CC---------CeEEEEECCCCcEEEeeC
Q 001472 160 -GGFDNVVKVWDLTAGKL---LHDFKFHEGHIRSIDFHPLEFL-LATGS--AD---------RTVKFWDLETFELIGSTR 223 (1072)
Q Consensus 160 -GS~DGsI~IWDl~tgk~---i~~~~~h~g~ItsLafSPdg~l-LaTgS--~D---------GtIrIWDl~tge~i~~~~ 223 (1072)
+|.-+.++||....... +..-......-..+.|++-|.- |+.++ -| .+++++++. |+....-.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L 267 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPL 267 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEec
Confidence 33456899998763221 1111111223346788887653 22222 22 368888888 44444444
Q ss_pred CCCCCeEEEEEeCCCCEEEEEE---CCcEEEEEecCCeeecccccCCCe-eeeEEecCCCEEEEEEcC---CeEEEEEcC
Q 001472 224 PEVTGVHAITFHPDGRTLFSGF---DDNLKVYSWEPVICHDSVDMGWST-LGDLCINDGKLLGCSFYR---NSVGIWVAD 296 (1072)
Q Consensus 224 ~h~~~VtsIafSPDG~~LasGs---dg~I~Vwd~~s~~~~~~l~~~~s~-i~~l~spDGk~LAsgs~D---GsVrIWDld 296 (1072)
...++|+++.|+++|+-+++.. -..+.||+++-.-.. +.+..+ ....|.|.|++|+.++.+ |.|.|||+.
T Consensus 268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~---df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVF---DFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeE---eCCCCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence 4568999999999998887753 235888888754433 333333 345667999998887765 899999987
Q ss_pred CCceeeeecCCCCCCCCCeeEEEECCCCCccceEE
Q 001472 297 VSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKV 331 (1072)
Q Consensus 297 s~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~V 331 (1072)
..+. +. .......+-..|||||.+++...
T Consensus 345 n~K~--i~----~~~a~~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 345 NRKL--IA----KFKAANTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred chhh--cc----ccccCCceEEEEcCCCcEEEEEe
Confidence 5322 21 23345567789999999755543
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-08 Score=114.29 Aligned_cols=283 Identities=18% Similarity=0.216 Sum_probs=189.6
Q ss_pred CCeEEEEECCCCc---eEEEeeCCCCCeEEEEEcCCCCEEEEEEcC---CeEEEEEcCC--CeeEE--EEeCCCCCeEEE
Q 001472 37 DQKVNLWAIGKPT---ALMSLCGLSSPVDSVAFDSAEVLVLAGAST---GVIKLWDLEE--SKMVR--TLTGHKSNCTAV 106 (1072)
Q Consensus 37 DGtV~IWDl~t~~---~l~sl~~hs~~ItsLafSPdG~~LatGS~D---GsI~IWDl~t--gk~i~--tl~~h~~~VtsL 106 (1072)
+.-|++|++.+.. ....+......++-++|+|++++|+++..+ |.|..|.++. |++.. .......+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 4669999986322 122233456778899999999999998664 6787777764 55422 112223344789
Q ss_pred EEcCCCCEEEEEeC-CCeEEEEECCC-CeE---EEEEecCCCC----------eEEEEEcCCCCEEEEEecC-CeEEEEE
Q 001472 107 EFHPFGEFFASGCM-DTNLKIWDIRK-KGC---IHTYKGHTRG----------INTIRFTPDGRWVVSGGFD-NVVKVWD 170 (1072)
Q Consensus 107 afSPdg~~LaSgs~-DGsI~IWDlrt-gk~---v~~l~~h~~~----------VtsLafSPDG~~LaTGS~D-GsI~IWD 170 (1072)
+++++|++++++.. .|.|.++-++. |.. +..+. |.+. +.+..|.|++++|++.+.. -.|.+|+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK-HTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeee-cCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 99999999998865 58899999865 332 22222 4443 8899999999999987742 3799999
Q ss_pred CCCCceEEEee---ecCCceEEEEEcCCCcEEEEEEC-CCeEEEEECCCC-cEEEeeCC---------CCCCeEEEEEeC
Q 001472 171 LTAGKLLHDFK---FHEGHIRSIDFHPLEFLLATGSA-DRTVKFWDLETF-ELIGSTRP---------EVTGVHAITFHP 236 (1072)
Q Consensus 171 l~tgk~i~~~~---~h~g~ItsLafSPdg~lLaTgS~-DGtIrIWDl~tg-e~i~~~~~---------h~~~VtsIafSP 236 (1072)
+..|++...-. ........|.|+|++++.++.+. +++|.+|..... ..+..++. ...+...|.+++
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 99776532211 23455789999999999887775 899999998873 22222211 123567889999
Q ss_pred CCCEEEEEE--CCcEEEEEecCCeeecc----c-ccCCCeeeeEEecCCCEEEEEEcC-CeEEEEEcCCCceeeeecCCC
Q 001472 237 DGRTLFSGF--DDNLKVYSWEPVICHDS----V-DMGWSTLGDLCINDGKLLGCSFYR-NSVGIWVADVSHVEPYGVGAP 308 (1072)
Q Consensus 237 DG~~LasGs--dg~I~Vwd~~s~~~~~~----l-~~~~s~i~~l~spDGk~LAsgs~D-GsVrIWDlds~~l~~~~v~~~ 308 (1072)
||++|.++. .+.|.+|.++.....-. . ..+..+....+.++|++|+++..+ ..|.+|.++.....--....
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~- 332 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR- 332 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc-
Confidence 999999984 44688888876433211 1 222335556677899999888855 57999987654443332222
Q ss_pred CCCCCCeeEEEEC
Q 001472 309 EPDQSICTEVKFN 321 (1072)
Q Consensus 309 ~~~~~~ItsVaFS 321 (1072)
........|+.|.
T Consensus 333 ~~~~p~Pvcv~f~ 345 (346)
T COG2706 333 YAVVPEPVCVKFL 345 (346)
T ss_pred ccCCCCcEEEEEc
Confidence 3445566777775
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.8e-10 Score=128.71 Aligned_cols=188 Identities=17% Similarity=0.310 Sum_probs=156.8
Q ss_pred CCCcEEEEEECCCeEEEEECCCCceEEEeeC---CCCCeEEEEEc--------------------CCCCEEEEEEcCCeE
Q 001472 26 KACRFLITGGDDQKVNLWAIGKPTALMSLCG---LSSPVDSVAFD--------------------SAEVLVLAGASTGVI 82 (1072)
Q Consensus 26 dg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~---hs~~ItsLafS--------------------PdG~~LatGS~DGsI 82 (1072)
.+..|+|....||.++||+..+++....+.. ..+...+..|. .+...++.|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 3347899999999999999988877666532 23445555552 234478888999999
Q ss_pred EEEEcCCCeeEEEEe--CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 001472 83 KLWDLEESKMVRTLT--GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSG 160 (1072)
Q Consensus 83 ~IWDl~tgk~i~tl~--~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTG 160 (1072)
.+|++..|+....+. .|.+.|.++.|+.+-..|.+++.|+.+..|+...+..++.++.....+.+++.+|||..++++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999999888776 688999999999998999999999999999999999999999888899999999999999988
Q ss_pred ecCCeEEEEECCCCceEEEeeecCCceEEEEEcCC-----CcEEEE-EECCCeEEEEECCC
Q 001472 161 GFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPL-----EFLLAT-GSADRTVKFWDLET 215 (1072)
Q Consensus 161 S~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPd-----g~lLaT-gS~DGtIrIWDl~t 215 (1072)
+ +.|++||+++++.+..|.+|.++|.+++|--+ |.++++ ...+..|.+|-+..
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 7 68999999999999999999999999999776 555554 34455677886654
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-09 Score=128.28 Aligned_cols=187 Identities=18% Similarity=0.234 Sum_probs=159.6
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCeeEEEEeC---CCCCeEEEEEc------C--------------CCCEEEEEeCCCeE
Q 001472 68 SAEVLVLAGASTGVIKLWDLEESKMVRTLTG---HKSNCTAVEFH------P--------------FGEFFASGCMDTNL 124 (1072)
Q Consensus 68 PdG~~LatGS~DGsI~IWDl~tgk~i~tl~~---h~~~VtsLafS------P--------------dg~~LaSgs~DGsI 124 (1072)
|...++|....||.+++|+...++....+.. ..+...+..|. | +-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999999988777653 23445555553 1 22367788889999
Q ss_pred EEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEE
Q 001472 125 KIWDIRKKGCIHTYK--GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATG 202 (1072)
Q Consensus 125 ~IWDlrtgk~v~~l~--~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTg 202 (1072)
.+|+...++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+......+..+++....+.+++.+|||..|+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999999877775 588899999999998999999999999999999999999999988999999999999999988
Q ss_pred ECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCC-----CCEEEEE--ECCcEEEEEecC
Q 001472 203 SADRTVKFWDLETFELIGSTRPEVTGVHAITFHPD-----GRTLFSG--FDDNLKVYSWEP 256 (1072)
Q Consensus 203 S~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPD-----G~~LasG--sdg~I~Vwd~~s 256 (1072)
+ +.|.+||+++++.+..|.+|.++|++++|.-+ |.++.++ .+..+.+|-.+.
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 7 68999999999999999999999999999887 8888875 455688888765
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-08 Score=111.62 Aligned_cols=286 Identities=18% Similarity=0.243 Sum_probs=195.5
Q ss_pred CCeEEEEEcCCC--ee-EEEEeCCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCC--CeEE--EEEecCCCCeEEE
Q 001472 79 TGVIKLWDLEES--KM-VRTLTGHKSNCTAVEFHPFGEFFASGCMD---TNLKIWDIRK--KGCI--HTYKGHTRGINTI 148 (1072)
Q Consensus 79 DGsI~IWDl~tg--k~-i~tl~~h~~~VtsLafSPdg~~LaSgs~D---GsI~IWDlrt--gk~v--~~l~~h~~~VtsL 148 (1072)
+.-|++|++.+. +. ...+-...+..+-++|+|++++|+++..+ |.|..|.+.. |... ........+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 356999998732 21 11122356678899999999999888554 6777777664 4432 2222234455899
Q ss_pred EEcCCCCEEEEEec-CCeEEEEECCC-CceEE--EeeecCCc----------eEEEEEcCCCcEEEEEEC-CCeEEEEEC
Q 001472 149 RFTPDGRWVVSGGF-DNVVKVWDLTA-GKLLH--DFKFHEGH----------IRSIDFHPLEFLLATGSA-DRTVKFWDL 213 (1072)
Q Consensus 149 afSPDG~~LaTGS~-DGsI~IWDl~t-gk~i~--~~~~h~g~----------ItsLafSPdg~lLaTgS~-DGtIrIWDl 213 (1072)
+++++|++++++.. .|.|.++-++. |.+.. ....|.+. +....+.|++++|++..- --.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999888774 67999999866 43221 12224444 788999999999988753 236999999
Q ss_pred CCCcEEEe---eCCCCCCeEEEEEeCCCCEEEEE--ECCcEEEEEecCC--ee-----ecccc----cCCCeeeeEEecC
Q 001472 214 ETFELIGS---TRPEVTGVHAITFHPDGRTLFSG--FDDNLKVYSWEPV--IC-----HDSVD----MGWSTLGDLCIND 277 (1072)
Q Consensus 214 ~tge~i~~---~~~h~~~VtsIafSPDG~~LasG--sdg~I~Vwd~~s~--~~-----~~~l~----~~~s~i~~l~spD 277 (1072)
..|..... ......+.+.|.|+|+|++..+- -++.|.+|.++.. .. +..++ ..........++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 97654321 11345678999999999988775 4678999999873 21 11121 2222334455689
Q ss_pred CCEEEEEEc-CCeEEEEEcCCC--ceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcceEEeecCCcccceE
Q 001472 278 GKLLGCSFY-RNSVGIWVADVS--HVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIK 354 (1072)
Q Consensus 278 Gk~LAsgs~-DGsVrIWDlds~--~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD~et~eI~ 354 (1072)
|++|.++.. ...|.+|.++.. .+...... ..+........|+|+|+. +++.++....+..+.-|-++|.+.
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~--~teg~~PR~F~i~~~g~~----Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGIT--PTEGQFPRDFNINPSGRF----LIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe--ccCCcCCccceeCCCCCE----EEEEccCCCcEEEEEEcCCCceEE
Confidence 999998863 247888877543 34333321 334445788899999996 555666666688888999999999
Q ss_pred EEeecCCCCccceeee
Q 001472 355 TIYVDSTGGKPVASQK 370 (1072)
Q Consensus 355 ~i~iDs~gGepv~~~~ 370 (1072)
.+..+..+++|+.+.-
T Consensus 329 ~~~~~~~~p~Pvcv~f 344 (346)
T COG2706 329 LLGRYAVVPEPVCVKF 344 (346)
T ss_pred ecccccCCCCcEEEEE
Confidence 9999988999986653
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-09 Score=126.74 Aligned_cols=261 Identities=15% Similarity=0.139 Sum_probs=177.4
Q ss_pred CCCCCeEEEEEcCCCCEEE-EEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE
Q 001472 56 GLSSPVDSVAFDSAEVLVL-AGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC 134 (1072)
Q Consensus 56 ~hs~~ItsLafSPdG~~La-tGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~ 134 (1072)
.+....+.+..+|||+|++ +|.+.-.|++||+..-.+...-.-....|.-.-++-|-..++.-..|..|-+.. ..|.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa-k~G~- 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA-KYGR- 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehh-hcCe-
Confidence 3556678899999999765 566788999999976554333222233444444444444555556677776554 2222
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECC
Q 001472 135 IHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLE 214 (1072)
Q Consensus 135 v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~ 214 (1072)
-..+. -...-..++++.-..-|++++....|+-+++..|..+..|....+.++++..++-..+|++|+.+|.|.+||.+
T Consensus 127 hy~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 127 HYRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eeeee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 11122 22234566666544446666667789999999999999998888999999999999999999999999999999
Q ss_pred CCcEEEeeCC------CCC-----CeEEEEEeCCCCEEEEE-ECCcEEEEEecCCeeecccccCC--CeeeeEEec-C-C
Q 001472 215 TFELIGSTRP------EVT-----GVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDMGW--STLGDLCIN-D-G 278 (1072)
Q Consensus 215 tge~i~~~~~------h~~-----~VtsIafSPDG~~LasG-sdg~I~Vwd~~s~~~~~~l~~~~--s~i~~l~sp-D-G 278 (1072)
....+..+.. +.+ .|+++.|+.+|-.+++| +.|.+.|||+........-++++ .+....|.+ + +
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence 8665554432 222 39999999999999998 56779999999877665544433 222233322 2 3
Q ss_pred CEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCC
Q 001472 279 KLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 279 k~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs 325 (1072)
..+++. ....++|||-.++...... .....+..+|+-|+++
T Consensus 286 ~~v~S~-Dk~~~kiWd~~~Gk~~asi-----Ept~~lND~C~~p~sG 326 (703)
T KOG2321|consen 286 NKVVSM-DKRILKIWDECTGKPMASI-----EPTSDLNDFCFVPGSG 326 (703)
T ss_pred ceEEec-chHHhhhcccccCCceeec-----cccCCcCceeeecCCc
Confidence 445544 5678999987766544432 2234589999999887
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-08 Score=116.59 Aligned_cols=263 Identities=13% Similarity=0.047 Sum_probs=170.9
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEE-EE
Q 001472 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTA-VE 107 (1072)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~Vts-La 107 (1072)
..+++++.+|.|..+|..+++.+............... ++..+++++.+|.|+.||..+|+.+....... .+.+ ..
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~ 142 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPL 142 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCE
Confidence 46888888999999999999988776544322222222 46788888899999999999999887765332 2221 12
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCe-----EEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeee
Q 001472 108 FHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGI-----NTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182 (1072)
Q Consensus 108 fSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~V-----tsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~ 182 (1072)
+ .+..++.++.+|.|+.||.++|+.+..+......+ ....+. +..++.+..+|.+..+|..+|+.+.....
T Consensus 143 v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 143 V--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred E--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 2 35567778889999999999999888776433211 111121 24677888889999999999988766442
Q ss_pred cCC----ce---EEEEEcC--CCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEE-EECCcEEEE
Q 001472 183 HEG----HI---RSIDFHP--LEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVY 252 (1072)
Q Consensus 183 h~g----~I---tsLafSP--dg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~Las-Gsdg~I~Vw 252 (1072)
... .+ ..+.-+| .+..+++++.+|.++.||..+++.+...... ....... ++..+++ ..++.+..+
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~ 294 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVAL 294 (377)
T ss_pred ccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEE
Confidence 110 00 0011111 2557777888999999999999887765421 1222222 3444444 456778888
Q ss_pred EecCCeeeccc-ccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeee
Q 001472 253 SWEPVICHDSV-DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPY 303 (1072)
Q Consensus 253 d~~s~~~~~~l-~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~ 303 (1072)
|..++...... ........... ..+..|++++.+|.|.+||...++....
T Consensus 295 d~~tG~~~W~~~~~~~~~~ssp~-i~g~~l~~~~~~G~l~~~d~~tG~~~~~ 345 (377)
T TIGR03300 295 DRRSGSELWKNDELKYRQLTAPA-VVGGYLVVGDFEGYLHWLSREDGSFVAR 345 (377)
T ss_pred ECCCCcEEEccccccCCccccCE-EECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 88777654333 11111111111 2466888888999999999877766543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-08 Score=112.84 Aligned_cols=258 Identities=12% Similarity=0.025 Sum_probs=175.8
Q ss_pred CeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEc----------CCeEEEEEcCCCeeEEEEeCCCC------
Q 001472 38 QKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS----------TGVIKLWDLEESKMVRTLTGHKS------ 101 (1072)
Q Consensus 38 GtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~----------DGsI~IWDl~tgk~i~tl~~h~~------ 101 (1072)
+.|.+.|..+.+.+..+..-..+- .+ ++|+|+.|+++.. ++.|.+||..+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999999999888887544443 35 9999998888776 68999999999999988874222
Q ss_pred -CeEEEEEcCCCCEEEEEe-C-CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCC-CceE
Q 001472 102 -NCTAVEFHPFGEFFASGC-M-DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTA-GKLL 177 (1072)
Q Consensus 102 -~VtsLafSPdg~~LaSgs-~-DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~t-gk~i 177 (1072)
.-..++++|||++|++.. . +..|.++|+.+++.+..+.-.. ...-...+.+..++. +.||......+.. |+..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~--~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFFMH--CRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccEEE--eecCceEEEEecCCCceE
Confidence 234789999999999876 3 6889999999999998887432 233333333333222 2345444433322 2211
Q ss_pred -EEeee-cC--Cce-EEEEEcC-CCcEEEEEECCCeEEEEECCC-----CcEEEeeCC-------CCCCeEEEEEeCCCC
Q 001472 178 -HDFKF-HE--GHI-RSIDFHP-LEFLLATGSADRTVKFWDLET-----FELIGSTRP-------EVTGVHAITFHPDGR 239 (1072)
Q Consensus 178 -~~~~~-h~--g~I-tsLafSP-dg~lLaTgS~DGtIrIWDl~t-----ge~i~~~~~-------h~~~VtsIafSPDG~ 239 (1072)
..... +. ..+ ..-.|.+ +|.++++... |.|++.|+.. ...+..+.. ..+++.-++++++|+
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 11110 11 000 0003345 7888877766 9999999643 223322211 223455699999999
Q ss_pred EEEEEE-----------CCcEEEEEecCCeeecccccCCCeeeeEEecCCC-EEEEEE-cCCeEEEEEcCCCcee
Q 001472 240 TLFSGF-----------DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGK-LLGCSF-YRNSVGIWVADVSHVE 301 (1072)
Q Consensus 240 ~LasGs-----------dg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk-~LAsgs-~DGsVrIWDlds~~l~ 301 (1072)
.+++.. .+.+.++|..+.+....+..+..+....+++||+ +|++.. .++.|.++|....+..
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 988842 1358999999999999999888999999999999 777665 5788999998766543
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-08 Score=116.93 Aligned_cols=253 Identities=15% Similarity=0.069 Sum_probs=163.4
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEE-EEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCe----
Q 001472 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS-VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNC---- 103 (1072)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~Its-LafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~V---- 103 (1072)
..+++++.+|.+..||..+++.+....... .+.+ ... .+..++.++.+|.|+.||..+|+.+..+......+
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 467788889999999999999887665322 2221 111 35577778889999999999999888765433221
Q ss_pred -EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC----C---eEEEEEcC--CCCEEEEEecCCeEEEEECCC
Q 001472 104 -TAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTR----G---INTIRFTP--DGRWVVSGGFDNVVKVWDLTA 173 (1072)
Q Consensus 104 -tsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~----~---VtsLafSP--DG~~LaTGS~DGsI~IWDl~t 173 (1072)
.+..+. +..++++..+|.++.+|..+|+.+........ . +..+.-+| .+..+++++.+|.+..||..+
T Consensus 183 ~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t 260 (377)
T TIGR03300 183 SASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS 260 (377)
T ss_pred CCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC
Confidence 111222 34677888889999999999987765431100 0 00011111 345788888899999999999
Q ss_pred CceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCC-CeEEEEEeCCCCEEEEE-ECCcEEE
Q 001472 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVT-GVHAITFHPDGRTLFSG-FDDNLKV 251 (1072)
Q Consensus 174 gk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~-~VtsIafSPDG~~LasG-sdg~I~V 251 (1072)
|+.+...... ....... .+..+++++.+|.|+.+|..+++.+........ ...+... .+..|+++ .++.+++
T Consensus 261 G~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 261 GRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHW 334 (377)
T ss_pred CcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEE
Confidence 9988776521 1222222 466788888999999999999988876533222 2222222 24455554 5677889
Q ss_pred EEecCCeeecccccCCCe-eeeEEecCCCEEEEEEcCCeEEEE
Q 001472 252 YSWEPVICHDSVDMGWST-LGDLCINDGKLLGCSFYRNSVGIW 293 (1072)
Q Consensus 252 wd~~s~~~~~~l~~~~s~-i~~l~spDGk~LAsgs~DGsVrIW 293 (1072)
++..+++....+..+... ...-...+++ |+.++.||.|..|
T Consensus 335 ~d~~tG~~~~~~~~~~~~~~~sp~~~~~~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 335 LSREDGSFVARLKTDGSGIASPPVVVGDG-LLVQTRDGDLYAF 376 (377)
T ss_pred EECCCCCEEEEEEcCCCccccCCEEECCE-EEEEeCCceEEEe
Confidence 998888777666544322 2222233444 6677789988776
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-09 Score=120.98 Aligned_cols=245 Identities=19% Similarity=0.298 Sum_probs=171.0
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe-----eEEEEeCC------------CCCeEEEEEcCCCC--EEEEE
Q 001472 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK-----MVRTLTGH------------KSNCTAVEFHPFGE--FFASG 118 (1072)
Q Consensus 58 s~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk-----~i~tl~~h------------~~~VtsLafSPdg~--~LaSg 118 (1072)
..-|.++.|...|.+|++|..+|.|.+|.-.... ....++.| ...|..+.|.++++ .|+..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4557899999999999999999999999644322 22333333 24588899998765 67777
Q ss_pred eCCCeEEEEECCCCeEE-----------------------------------EEE-ecCCCCeEEEEEcCCCCEEEEEec
Q 001472 119 CMDTNLKIWDIRKKGCI-----------------------------------HTY-KGHTRGINTIRFTPDGRWVVSGGF 162 (1072)
Q Consensus 119 s~DGsI~IWDlrtgk~v-----------------------------------~~l-~~h~~~VtsLafSPDG~~LaTGS~ 162 (1072)
+.|.+|++|.+...... +.+ .+|...|.++.++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 88999999987532110 001 24666789999999999888765
Q ss_pred CCeEEEEECCCCce---EEEeeecC-----CceEEEEEcCC-CcEEEEEECCCeEEEEECCCCcEE------EeeC----
Q 001472 163 DNVVKVWDLTAGKL---LHDFKFHE-----GHIRSIDFHPL-EFLLATGSADRTVKFWDLETFELI------GSTR---- 223 (1072)
Q Consensus 163 DGsI~IWDl~tgk~---i~~~~~h~-----g~ItsLafSPd-g~lLaTgS~DGtIrIWDl~tge~i------~~~~---- 223 (1072)
|-.|.+|.+.-... +..++.+. .-|++..|+|. .++++-.+..|+|++.|++..... ....
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 78899999864322 22233222 34788899995 577777888999999999843211 1111
Q ss_pred ------CCCCCeEEEEEeCCCCEEEEEECCcEEEEEecC-Ceeecccc----------------cCCCeeeeEEecCCCE
Q 001472 224 ------PEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEP-VICHDSVD----------------MGWSTLGDLCINDGKL 280 (1072)
Q Consensus 224 ------~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s-~~~~~~l~----------------~~~s~i~~l~spDGk~ 280 (1072)
.....|..+.|+++|+|+++-.--.+++||+.. ......++ .-+....+.|+.++.+
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~ 343 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY 343 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcce
Confidence 111247889999999999999888999999853 22222221 1234456677778889
Q ss_pred EEEEEcCCeEEEEEcCCCceeee
Q 001472 281 LGCSFYRNSVGIWVADVSHVEPY 303 (1072)
Q Consensus 281 LAsgs~DGsVrIWDlds~~l~~~ 303 (1072)
+++|++.+.+++|+++.+..+..
T Consensus 344 v~TGsy~n~frvf~~~~gsk~d~ 366 (433)
T KOG1354|consen 344 VMTGSYNNVFRVFNLARGSKEDF 366 (433)
T ss_pred EecccccceEEEecCCCCcceee
Confidence 99999999999999765554433
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.4e-08 Score=125.06 Aligned_cols=311 Identities=14% Similarity=0.168 Sum_probs=202.6
Q ss_pred CCCeEEEEEecCCCcEEEEEECCCeEEEE----ECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 001472 15 SANVNCISIGKKACRFLITGGDDQKVNLW----AIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES 90 (1072)
Q Consensus 15 sg~Vt~IafSPdg~~lLaTGs~DGtV~IW----Dl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tg 90 (1072)
.+.|.++.|-++. ..++.+..+|.|.++ +... ..+........+|.+++||||+..|+..+.+|+|.+.+-. .
T Consensus 75 ~~~ivs~~yl~d~-~~l~~~~~~Gdi~~~~~~~~~~~-~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-f 151 (928)
T PF04762_consen 75 NDKIVSFQYLADS-ESLCIALASGDIILVREDPDPDE-DEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-F 151 (928)
T ss_pred CCcEEEEEeccCC-CcEEEEECCceEEEEEccCCCCC-ceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-c
Confidence 4679999999998 668888889999999 4433 2333444567899999999999999999999998887531 1
Q ss_pred eeE------------------------EEEeC------------------------CCCCeEEEEEcCCCCEEEEEeC--
Q 001472 91 KMV------------------------RTLTG------------------------HKSNCTAVEFHPFGEFFASGCM-- 120 (1072)
Q Consensus 91 k~i------------------------~tl~~------------------------h~~~VtsLafSPdg~~LaSgs~-- 120 (1072)
.++ ..|.| +...-..++|-.||.|||+.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 111 00100 2224457889999999999875
Q ss_pred -C---CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEec---CCeEEEEECCCCceEEEeee----cCCceEE
Q 001472 121 -D---TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF---DNVVKVWDLTAGKLLHDFKF----HEGHIRS 189 (1072)
Q Consensus 121 -D---GsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~---DGsI~IWDl~tgk~i~~~~~----h~g~Its 189 (1072)
. ..|+||+ +.|........-.+--.+++|-|.|++|++.-. ...|.+|. ++|-.-..|.. ....|..
T Consensus 232 ~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 232 ETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred CCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeE
Confidence 3 4699999 557655555444444568999999998888664 34677777 44544444432 3567999
Q ss_pred EEEcCCCcEEEEEECCCeEEEEECCCCcEEEe--eC-CCCCCeEEEEEeCCC-CEEEEEE-CCcEEEEEecCCeeecccc
Q 001472 190 IDFHPLEFLLATGSADRTVKFWDLETFELIGS--TR-PEVTGVHAITFHPDG-RTLFSGF-DDNLKVYSWEPVICHDSVD 264 (1072)
Q Consensus 190 LafSPdg~lLaTgS~DGtIrIWDl~tge~i~~--~~-~h~~~VtsIafSPDG-~~LasGs-dg~I~Vwd~~s~~~~~~l~ 264 (1072)
+.|++|+.+|+....|. |.+|-..+....-+ +. .....+..+.|+|.. ..|.... ++.+..++|.-........
T Consensus 310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~ 388 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS 388 (928)
T ss_pred EEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence 99999999999987665 99999988764322 21 122345569999954 3455544 4777776665322221111
Q ss_pred cCCCeeeeEEec-CCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcceEE
Q 001472 265 MGWSTLGDLCIN-DGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRS 343 (1072)
Q Consensus 265 ~~~s~i~~l~sp-DGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ 343 (1072)
.+ |...+++. .+..+.+-.+...-+.|-+..........|.+++|++++.. .++-...|.+.+
T Consensus 389 ----------~~~D~g~vaVI-DG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~-----~avl~~d~~l~~ 452 (928)
T PF04762_consen 389 ----------SPNDNGTVAVI-DGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSR-----FAVLTSDGSLSI 452 (928)
T ss_pred ----------CccCceEEEEE-eCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCe-----EEEEECCCCEEE
Confidence 11 22223332 34567776666555544333332445788999999999883 555566665555
Q ss_pred eecC
Q 001472 344 TSPD 347 (1072)
Q Consensus 344 ivpD 347 (1072)
+.++
T Consensus 453 ~~~~ 456 (928)
T PF04762_consen 453 YEWD 456 (928)
T ss_pred EEec
Confidence 5544
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.7e-09 Score=118.91 Aligned_cols=280 Identities=17% Similarity=0.235 Sum_probs=194.1
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeC-----------CCeEEEEEC
Q 001472 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM-----------DTNLKIWDI 129 (1072)
Q Consensus 61 ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~-----------DGsI~IWDl 129 (1072)
-+-+.|||.|.||++-...| |.+|--.+...++.+. | ..|.-+.|||+.+||++-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46799999999999988776 8999766666666654 4 35788999999999998542 257999999
Q ss_pred CCCeEEEEEecCCC--Ce-EEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEEC--
Q 001472 130 RKKGCIHTYKGHTR--GI-NTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA-- 204 (1072)
Q Consensus 130 rtgk~v~~l~~h~~--~V-tsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~-- 204 (1072)
.+|.....+....+ .+ .-+.||.|++|+|.-.. ..|.||+..+..++..-...-..|....|+|.+++||.-..
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 99998877765222 22 34689999999988765 57899998775554333334566889999999998886543
Q ss_pred ---CCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECC-----------cEEEEEecC-CeeecccccCCCe
Q 001472 205 ---DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD-----------NLKVYSWEP-VICHDSVDMGWST 269 (1072)
Q Consensus 205 ---DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg-----------~I~Vwd~~s-~~~~~~l~~~~s~ 269 (1072)
-..+.+..+.+++.+.....+.-.-..+.|-.+|.+|++-.+. ++.||.++. ...+..+......
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v 448 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV 448 (698)
T ss_pred cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence 2357788888888777766666555678899999999974321 144554443 3344555666667
Q ss_pred eeeEEecCCCEEEEEEc---CCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcceEEeec
Q 001472 270 LGDLCINDGKLLGCSFY---RNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSP 346 (1072)
Q Consensus 270 i~~l~spDGk~LAsgs~---DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivp 346 (1072)
+...|-|.|..+++-+. ..++.+|.+......+..+. ...+..++.+.|||.|..+++..+. ...|-+.++-.
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk--~~dk~~~N~vfwsPkG~fvvva~l~--s~~g~l~F~D~ 524 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK--ELDKKFANTVFWSPKGRFVVVAALV--SRRGDLEFYDT 524 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh--hhcccccceEEEcCCCcEEEEEEec--ccccceEEEec
Confidence 77777788876665442 36789998875433333322 2335788999999999964444333 25554555544
Q ss_pred CC
Q 001472 347 DY 348 (1072)
Q Consensus 347 D~ 348 (1072)
++
T Consensus 525 ~~ 526 (698)
T KOG2314|consen 525 DY 526 (698)
T ss_pred ch
Confidence 43
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3e-09 Score=115.76 Aligned_cols=240 Identities=19% Similarity=0.248 Sum_probs=169.9
Q ss_pred CCCeEEEEEecCCCcEEEEEE------------CCCeEEEEECCCCceEE---EeeCCCCCeEEEEEcC---CCC-EEEE
Q 001472 15 SANVNCISIGKKACRFLITGG------------DDQKVNLWAIGKPTALM---SLCGLSSPVDSVAFDS---AEV-LVLA 75 (1072)
Q Consensus 15 sg~Vt~IafSPdg~~lLaTGs------------~DGtV~IWDl~t~~~l~---sl~~hs~~ItsLafSP---dG~-~Lat 75 (1072)
.-++.|+.-.+ ++|++|+ ..|.+.+|++...+... ........+..+.|.. +|. .++.
T Consensus 14 ~~~~C~l~~~~---~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~ 90 (339)
T KOG0280|consen 14 PVPICCLCHTR---NVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLD 90 (339)
T ss_pred CCCcccccccc---ceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeee
Confidence 34455554444 3566664 34789999987655433 1223345677788864 454 5566
Q ss_pred EEcCCeEEEEEcCCCeeEEEEeCCC------CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE--EEEEecCCCCeEE
Q 001472 76 GASTGVIKLWDLEESKMVRTLTGHK------SNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC--IHTYKGHTRGINT 147 (1072)
Q Consensus 76 GS~DGsI~IWDl~tgk~i~tl~~h~------~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~--v~~l~~h~~~Vts 147 (1072)
+...|.|.++..........+.+-. ....++.|++.+..++++..+|.+.+-+...... ++.++.|..+++.
T Consensus 91 a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wt 170 (339)
T KOG0280|consen 91 AHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWT 170 (339)
T ss_pred ccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeee
Confidence 6778999999876544444343221 1256788999999999999999999766555543 3478889999999
Q ss_pred EEEcC-CCCEEEEEecCCeEEEEECC-CCceEEE-eeecCCceEEEEEcC-CCcEEEEEECCCeEEEEECCC-CcEEEee
Q 001472 148 IRFTP-DGRWVVSGGFDNVVKVWDLT-AGKLLHD-FKFHEGHIRSIDFHP-LEFLLATGSADRTVKFWDLET-FELIGST 222 (1072)
Q Consensus 148 LafSP-DG~~LaTGS~DGsI~IWDl~-tgk~i~~-~~~h~g~ItsLafSP-dg~lLaTgS~DGtIrIWDl~t-ge~i~~~ 222 (1072)
..|+- +.+++.+|+.||.+..||++ .++.+.. .+.|...|.+|.-+| .+.+|++|+.|..|++||.++ ++++...
T Consensus 171 a~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~ 250 (339)
T KOG0280|consen 171 AKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA 250 (339)
T ss_pred eecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC
Confidence 99986 44688999999999999999 3444444 556888899998877 578999999999999999995 5666554
Q ss_pred CCCCCCeEEEEEeCC--CCEEEEEECCcEEEEEecCCe
Q 001472 223 RPEVTGVHAITFHPD--GRTLFSGFDDNLKVYSWEPVI 258 (1072)
Q Consensus 223 ~~h~~~VtsIafSPD--G~~LasGsdg~I~Vwd~~s~~ 258 (1072)
.. .++|..+.++|. ++.|+++..++.+|.+.+...
T Consensus 251 ~v-~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 251 KV-GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred cc-ccceEEEEecchhhhHHHHHHHhcCceEEEecccc
Confidence 33 488999999995 445666666677777766543
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-09 Score=117.84 Aligned_cols=242 Identities=16% Similarity=0.236 Sum_probs=168.7
Q ss_pred CCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCc-----eEEEeeCCC------------CCeEEEEEcCCC--CEEE
Q 001472 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT-----ALMSLCGLS------------SPVDSVAFDSAE--VLVL 74 (1072)
Q Consensus 14 Hsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~-----~l~sl~~hs------------~~ItsLafSPdG--~~La 74 (1072)
..+-|.+|.|...| .+||+|+.+|.|.+|.-.... ....++.|. ..|..+.|.+++ ..++
T Consensus 24 eadiis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeeccc-ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 34678999999999 899999999999999653322 222333332 458889999865 4677
Q ss_pred EEEcCCeEEEEEcCCCeeE-----------------------------------EE-EeCCCCCeEEEEEcCCCCEEEEE
Q 001472 75 AGASTGVIKLWDLEESKMV-----------------------------------RT-LTGHKSNCTAVEFHPFGEFFASG 118 (1072)
Q Consensus 75 tGS~DGsI~IWDl~tgk~i-----------------------------------~t-l~~h~~~VtsLafSPdg~~LaSg 118 (1072)
..+.|.+|++|.+...... +. -..|...|.++.++.|+..++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 7789999999987532100 11 12577789999999999988887
Q ss_pred eCCCeEEEEECCCCe-E--EEEEecCC-----CCeEEEEEcCC-CCEEEEEecCCeEEEEECCCCceE----EEee----
Q 001472 119 CMDTNLKIWDIRKKG-C--IHTYKGHT-----RGINTIRFTPD-GRWVVSGGFDNVVKVWDLTAGKLL----HDFK---- 181 (1072)
Q Consensus 119 s~DGsI~IWDlrtgk-~--v~~l~~h~-----~~VtsLafSPD-G~~LaTGS~DGsI~IWDl~tgk~i----~~~~---- 181 (1072)
.|=.|.+|++.--. . +.-++.+. .-|++..|+|. .++|+..+..|.|++.|++...+- ..+.
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 57889999986322 1 22223222 34788999994 567888889999999999853221 1111
Q ss_pred --------ecCCceEEEEEcCCCcEEEEEECCCeEEEEECCC-CcEEEeeCCCCC---------------CeEEEEEeCC
Q 001472 182 --------FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET-FELIGSTRPEVT---------------GVHAITFHPD 237 (1072)
Q Consensus 182 --------~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~t-ge~i~~~~~h~~---------------~VtsIafSPD 237 (1072)
.--..|..+.|+++|+++++-.. -+|++||+.. .+++..+..|.. .-..++|+.+
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 11245788999999999987665 5899999953 455555444321 1246789999
Q ss_pred CCEEEEEEC-CcEEEEEecCCe
Q 001472 238 GRTLFSGFD-DNLKVYSWEPVI 258 (1072)
Q Consensus 238 G~~LasGsd-g~I~Vwd~~s~~ 258 (1072)
+.++++|+- +..++|+...+.
T Consensus 341 ~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred cceEecccccceEEEecCCCCc
Confidence 999999864 458888865543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.8e-08 Score=110.88 Aligned_cols=256 Identities=16% Similarity=0.125 Sum_probs=165.3
Q ss_pred cCceEEEEecCCCCeEEEEEecCCCcEEEEEE---------CCCeEEEEECCCCceEEEeeCCC-------CCeEEEEEc
Q 001472 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGG---------DDQKVNLWAIGKPTALMSLCGLS-------SPVDSVAFD 67 (1072)
Q Consensus 4 tGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs---------~DGtV~IWDl~t~~~l~sl~~hs-------~~ItsLafS 67 (1072)
+++.+..+..-..+- .+ ++|||..+.++.+ .++.|.+||..+.+.+..+.... .....++++
T Consensus 36 ~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls 113 (352)
T TIGR02658 36 AGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLT 113 (352)
T ss_pred CCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEEC
Confidence 445555555433333 24 9999955555556 68899999999999998876422 233478999
Q ss_pred CCCCEEEEEE-c-CCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE--E---Eec
Q 001472 68 SAEVLVLAGA-S-TGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH--T---YKG 140 (1072)
Q Consensus 68 PdG~~LatGS-~-DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~--~---l~~ 140 (1072)
|+|++|++.. . +..|.++|+.+++.+..+.-.. ...-...+.+. ++ +.|.||......+....... . +..
T Consensus 114 ~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~ 190 (352)
T TIGR02658 114 PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDT-FF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHP 190 (352)
T ss_pred CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCc-cE-EEeecCceEEEEecCCCceEEeeeeeecC
Confidence 9999999876 3 6899999999999998887422 22222233222 22 22345555554433221111 1 111
Q ss_pred CCCCe-EEEEEcC-CCCEEEEEecCCeEEEEECCCC-----ceEEEeee-------cCCceEEEEEcCCCcEEEEEE---
Q 001472 141 HTRGI-NTIRFTP-DGRWVVSGGFDNVVKVWDLTAG-----KLLHDFKF-------HEGHIRSIDFHPLEFLLATGS--- 203 (1072)
Q Consensus 141 h~~~V-tsLafSP-DG~~LaTGS~DGsI~IWDl~tg-----k~i~~~~~-------h~g~ItsLafSPdg~lLaTgS--- 203 (1072)
...++ ..-.|.+ +|+++++..+ |.|.+.|+... +....+.. ..+.+.-++++++++.+++..
T Consensus 191 ~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~ 269 (352)
T TIGR02658 191 EDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQR 269 (352)
T ss_pred CccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCC
Confidence 00000 0114455 8887777665 99999996443 22222211 223345599999999888843
Q ss_pred -------CCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCC-EEEEE--ECCcEEEEEecCCeeeccc-ccC
Q 001472 204 -------ADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGR-TLFSG--FDDNLKVYSWEPVICHDSV-DMG 266 (1072)
Q Consensus 204 -------~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~-~LasG--sdg~I~Vwd~~s~~~~~~l-~~~ 266 (1072)
..+.|.++|..+++.+..+... ..+..++|++||+ +|++. .++.+.++|..+.+....+ ..+
T Consensus 270 ~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~vg 342 (352)
T TIGR02658 270 AKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQLG 342 (352)
T ss_pred ccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccCC
Confidence 1247999999999999887653 5789999999999 77664 3566999999998877776 443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-08 Score=116.79 Aligned_cols=291 Identities=15% Similarity=0.192 Sum_probs=198.3
Q ss_pred CCeEEEEEecCCCcEEEEEECCC---------------eEEEEECCCCceEEEeeCCCCC--eE-EEEEcCCCCEEEEEE
Q 001472 16 ANVNCISIGKKACRFLITGGDDQ---------------KVNLWAIGKPTALMSLCGLSSP--VD-SVAFDSAEVLVLAGA 77 (1072)
Q Consensus 16 g~Vt~IafSPdg~~lLaTGs~DG---------------tV~IWDl~t~~~l~sl~~hs~~--It-sLafSPdG~~LatGS 77 (1072)
..|.-+.|+|.+ +||.+-...+ .+.+||+.++..+..+.....+ .+ -+.|+-+++++|-.
T Consensus 72 ~~V~~~~fSP~~-kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv- 149 (561)
T COG5354 72 PDVKYLDFSPNE-KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV- 149 (561)
T ss_pred CCceecccCccc-ceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-
Confidence 468899999998 8999876543 4999999999999988776666 55 68899988887765
Q ss_pred cCCeEEEEEcCCCee-EEEEeCC-CCCeEEEEEcCCCC--EEEE-----EeCCCeEEEEECCCCeEEEEEecCCCCeEEE
Q 001472 78 STGVIKLWDLEESKM-VRTLTGH-KSNCTAVEFHPFGE--FFAS-----GCMDTNLKIWDIRKKGCIHTYKGHTRGINTI 148 (1072)
Q Consensus 78 ~DGsI~IWDl~tgk~-i~tl~~h-~~~VtsLafSPdg~--~LaS-----gs~DGsI~IWDlrtgk~v~~l~~h~~~VtsL 148 (1072)
....++|+++ ++.. ...+... ...|....|+|.++ .|+. .+..+.+++|.+..+..+....-....-..+
T Consensus 150 v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qL 228 (561)
T COG5354 150 VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQL 228 (561)
T ss_pred ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEE
Confidence 3457999997 3322 1111111 35688889999643 3443 3567889999998776655443333334678
Q ss_pred EEcCCCCEEEEEe-----------cCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEE--ECCCeEEEEECCC
Q 001472 149 RFTPDGRWVVSGG-----------FDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATG--SADRTVKFWDLET 215 (1072)
Q Consensus 149 afSPDG~~LaTGS-----------~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTg--S~DGtIrIWDl~t 215 (1072)
.|.+.|++|++-- ....++++++....+.... ...++|..++|.|.++.+++. ..+-.+.++|++.
T Consensus 229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred EEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeeccccc
Confidence 9999998876521 1246888888744433333 457899999999987665554 4678899999986
Q ss_pred CcEEEeeCCCCCCeEEEEEeCCCCEEEEE-E---CCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEE------
Q 001472 216 FELIGSTRPEVTGVHAITFHPDGRTLFSG-F---DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSF------ 285 (1072)
Q Consensus 216 ge~i~~~~~h~~~VtsIafSPDG~~LasG-s---dg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs------ 285 (1072)
. .... .....=..+.|+|.+++++.. . .+.+.+|+.........--.+.....+-|+|||+++.+..
T Consensus 308 N-l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~ 384 (561)
T COG5354 308 N-LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLR 384 (561)
T ss_pred c-eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccc
Confidence 5 3333 233455788999999999874 3 3458899876554433222233444556789999887764
Q ss_pred cCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCC
Q 001472 286 YRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 286 ~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs 325 (1072)
.|..|.|||+.+...- ..+.+.|-|.|.
T Consensus 385 ~Dn~i~l~~v~g~~~f------------el~~~~W~p~~~ 412 (561)
T COG5354 385 VDNSIKLWDVYGAKVF------------ELTNITWDPSGQ 412 (561)
T ss_pred cCcceEEEEecCchhh------------hhhhccccCCcc
Confidence 4788999998754332 344556666655
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-08 Score=116.95 Aligned_cols=293 Identities=14% Similarity=0.146 Sum_probs=196.4
Q ss_pred CeEEEEEecCCCcEEEEEE-----CC-----CeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 001472 17 NVNCISIGKKACRFLITGG-----DD-----QKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWD 86 (1072)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs-----~D-----GtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWD 86 (1072)
.+.++.|+|.| .+|.+-- .+ -.+.+|++.++.....+......-++..|+.|..+.+-- ..+.+++|+
T Consensus 75 ~~~~L~fSP~g-~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~ 152 (566)
T KOG2315|consen 75 KTYDLLFSPKG-NYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYD 152 (566)
T ss_pred eeeeeeecccc-cccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEe
Confidence 67888999998 6776531 12 347799998866555554433333789999988654432 357899999
Q ss_pred cCCCeeEEEEeCCCCCeEEEEEcCCCC--EEEE-----EeCCCeEEEEECCCCeEE-----EEEecCCCCeEEEEEcCCC
Q 001472 87 LEESKMVRTLTGHKSNCTAVEFHPFGE--FFAS-----GCMDTNLKIWDIRKKGCI-----HTYKGHTRGINTIRFTPDG 154 (1072)
Q Consensus 87 l~tgk~i~tl~~h~~~VtsLafSPdg~--~LaS-----gs~DGsI~IWDlrtgk~v-----~~l~~h~~~VtsLafSPDG 154 (1072)
+.+.+.+.. .-|...|..+.++|.+. ++|+ .+.-+.|+||.+.....- ..|. ...-..+.|.+-|
T Consensus 153 ~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~g 229 (566)
T KOG2315|consen 153 LGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLG 229 (566)
T ss_pred cCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCC
Confidence 877443322 23677899999999743 3333 234467999987622211 1111 1223467888766
Q ss_pred C-EEEEEe--cC---------CeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEE--EECCCeEEEEECCCCcEEE
Q 001472 155 R-WVVSGG--FD---------NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLAT--GSADRTVKFWDLETFELIG 220 (1072)
Q Consensus 155 ~-~LaTGS--~D---------GsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaT--gS~DGtIrIWDl~tge~i~ 220 (1072)
. +|+.++ -| ..++++++........+. ..++|.++.|+|++..+++ |..-.++.|||++ +..+.
T Consensus 230 t~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~ 307 (566)
T KOG2315|consen 230 TALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVF 307 (566)
T ss_pred ceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeE
Confidence 5 233222 22 368888887444444443 5899999999999965544 4456789999987 55665
Q ss_pred eeCCCCCCeEEEEEeCCCCEEEEEE----CCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEc------CCeE
Q 001472 221 STRPEVTGVHAITFHPDGRTLFSGF----DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFY------RNSV 290 (1072)
Q Consensus 221 ~~~~h~~~VtsIafSPDG~~LasGs----dg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~------DGsV 290 (1072)
.+ ..++-.++-|+|.|++|+.++ .|.+.|||....+++..+...+. ....|+|||++|++++. |+.+
T Consensus 308 df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t-t~~eW~PdGe~flTATTaPRlrvdNg~ 384 (566)
T KOG2315|consen 308 DF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT-TVFEWSPDGEYFLTATTAPRLRVDNGI 384 (566)
T ss_pred eC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc-eEEEEcCCCcEEEEEeccccEEecCCe
Confidence 55 356778999999999998754 34599999999888777766544 34567899999988873 6889
Q ss_pred EEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCC
Q 001472 291 GIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 291 rIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs 325 (1072)
+||++.+..+..... .+....+.|-|.-.
T Consensus 385 KiwhytG~~l~~~~f------~sEL~qv~W~P~~~ 413 (566)
T KOG2315|consen 385 KIWHYTGSLLHEKMF------KSELLQVEWRPFND 413 (566)
T ss_pred EEEEecCceeehhhh------hHhHhheeeeecCC
Confidence 999998766554432 12567788887544
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=133.16 Aligned_cols=196 Identities=19% Similarity=0.299 Sum_probs=157.4
Q ss_pred CCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCC----eEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe
Q 001472 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP----VDSVAFDSAEVLVLAGASTGVIKLWDLEESK 91 (1072)
Q Consensus 16 g~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~----ItsLafSPdG~~LatGS~DGsI~IWDl~tgk 91 (1072)
+.|....+..+. ..++.+..+..+.|||...+..+..+...... ..-+.++++.-++++|+.-|.|.+|++...+
T Consensus 88 ~wi~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 88 DWIFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred ccccccchhhhc-ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 334444444444 67888888899999999877766665533321 2224456777799999999999999987433
Q ss_pred eEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE-EEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEE
Q 001472 92 MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH-TYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWD 170 (1072)
Q Consensus 92 ~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~-~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWD 170 (1072)
.-..+.+|.+.|.++.|+-||.++++.+.|..+++|++.+.+... ..-+|...++.++|+|+ ++++++.|.+.++|+
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWG 244 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEe
Confidence 333688999999999999999999999999999999999988765 55679999999999998 899999999999997
Q ss_pred CCCCceEEEeeecC-CceEEEEEcCCCcEEEEEECCCeEEEEECCC
Q 001472 171 LTAGKLLHDFKFHE-GHIRSIDFHPLEFLLATGSADRTVKFWDLET 215 (1072)
Q Consensus 171 l~tgk~i~~~~~h~-g~ItsLafSPdg~lLaTgS~DGtIrIWDl~t 215 (1072)
.. +..+..+..|. ..|..++..++..++++++.||.+++||+..
T Consensus 245 ~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 245 VN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred cc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 64 55555777775 4589999999999999999999999999863
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.5e-10 Score=142.15 Aligned_cols=198 Identities=20% Similarity=0.371 Sum_probs=165.1
Q ss_pred EecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEee-CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001472 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLC-GLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89 (1072)
Q Consensus 11 L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~-~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~t 89 (1072)
++.|-..|.++.-+|.. .+.++|+.||.|++|....+..+..+. .....|+.+.|+.+|+.+.++..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred eecccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 45566789999999988 678999999999999998888877764 223788999999999999999999999999986
Q ss_pred CeeEEEEeCCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEecC
Q 001472 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGC---MDTNLKIWDIRKK---GCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163 (1072)
Q Consensus 90 gk~i~tl~~h~~~VtsLafSPdg~~LaSgs---~DGsI~IWDlrtg---k~v~~l~~h~~~VtsLafSPDG~~LaTGS~D 163 (1072)
.+.....++|+....++.|-. ..+++++ .++.+.+||.--. .+++ ..|.++++++++-|..++|++|+.+
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCc
Confidence 667777888999999999974 6667664 3688999996422 2344 7799999999999999999999999
Q ss_pred CeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCC
Q 001472 164 NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP 224 (1072)
Q Consensus 164 GsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~ 224 (1072)
|.|++||++..+.++.++. ++ ...++++|+..|.|+||++.....+..+..
T Consensus 2358 G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 9999999999888877764 44 578899999999999999998776666543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-08 Score=119.59 Aligned_cols=277 Identities=14% Similarity=0.132 Sum_probs=188.0
Q ss_pred CCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCc---------------eEEEeeCCCCCeEEEEEcCCCCEEEEEEcC
Q 001472 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT---------------ALMSLCGLSSPVDSVAFDSAEVLVLAGAST 79 (1072)
Q Consensus 15 sg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~---------------~l~sl~~hs~~ItsLafSPdG~~LatGS~D 79 (1072)
.....|+.|+... .|+++||.||.+++..+++.. .-+.+.+|+..|..+.|+.+.+.|-+...+
T Consensus 14 nvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 3578899999987 799999999999999874421 123467899999999999999999999999
Q ss_pred CeEEEEEcCCCeeEEEE--eCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 001472 80 GVIKLWDLEESKMVRTL--TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWV 157 (1072)
Q Consensus 80 GsI~IWDl~tgk~i~tl--~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~L 157 (1072)
|.|.+|-+-.|.-...+ ....+.|.+++|+.+|..++....||.|.+=.++... ++--.-.......+.|++|.+.+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeecccHHHH
Confidence 99999998776533222 1245668999999999999999999999887765433 32222122345688999999988
Q ss_pred EEEecCCeEEEEECCCCc-------eEEE----eeecCCceEEEEEc--------CCCcEEEEEECCCeEEEEECCCCcE
Q 001472 158 VSGGFDNVVKVWDLTAGK-------LLHD----FKFHEGHIRSIDFH--------PLEFLLATGSADRTVKFWDLETFEL 218 (1072)
Q Consensus 158 aTGS~DGsI~IWDl~tgk-------~i~~----~~~h~g~ItsLafS--------Pdg~lLaTgS~DGtIrIWDl~tge~ 218 (1072)
+.+-.+|.+.+||.+..- +... +......|..+.|. |+...|+++..+|.+.|..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 888899999999975421 1111 11122235566664 4778999999999998876544332
Q ss_pred EEeeCCCCCCeEEEEEeCCCCEEEEEECCc----------EEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCC
Q 001472 219 IGSTRPEVTGVHAITFHPDGRTLFSGFDDN----------LKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRN 288 (1072)
Q Consensus 219 i~~~~~h~~~VtsIafSPDG~~LasGsdg~----------I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DG 288 (1072)
...+... -.+..+.|+++|.+|++++.+. +.+|.- -+.....+......+..++|..+.+-+.-.-|+
T Consensus 252 Pvv~dtg-m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Avds 329 (1189)
T KOG2041|consen 252 PVVVDTG-MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDS 329 (1189)
T ss_pred CeEEecc-cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEecc
Confidence 2222222 4588999999999999864321 333321 122333444555555666665444333333566
Q ss_pred eEEEEEc
Q 001472 289 SVGIWVA 295 (1072)
Q Consensus 289 sVrIWDl 295 (1072)
.|.+=++
T Consensus 330 fiyfanI 336 (1189)
T KOG2041|consen 330 FIYFANI 336 (1189)
T ss_pred eEEEEee
Confidence 6665444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-08 Score=120.73 Aligned_cols=263 Identities=14% Similarity=0.177 Sum_probs=187.9
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe---------------eEEEEeCCCCCeEEEEEcCCCCEEEEEeCCC
Q 001472 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK---------------MVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122 (1072)
Q Consensus 58 s~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk---------------~i~tl~~h~~~VtsLafSPdg~~LaSgs~DG 122 (1072)
.....|+.|+.+..+|++|+.||.+++..+.+.. .-+++.+|.+.|.-+.|+.+.+.|-++..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 4557899999999999999999999999886431 2356789999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEE--ecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEE
Q 001472 123 NLKIWDIRKKGCIHTY--KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLA 200 (1072)
Q Consensus 123 sI~IWDlrtgk~v~~l--~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLa 200 (1072)
.|.+|-+-.|.-...+ ....+-|.+++|..||..++....||.|.+=.+.... ++-..........+.|++|...++
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeecccHHHHH
Confidence 9999998776543222 2244568999999999999999999999887765433 322222233356789999999888
Q ss_pred EEECCCeEEEEECCCC-------cEE----EeeCCCCCCeEEEEEe--------CCCCEEEEEECCc-EEEEEecCCeee
Q 001472 201 TGSADRTVKFWDLETF-------ELI----GSTRPEVTGVHAITFH--------PDGRTLFSGFDDN-LKVYSWEPVICH 260 (1072)
Q Consensus 201 TgS~DGtIrIWDl~tg-------e~i----~~~~~h~~~VtsIafS--------PDG~~LasGsdg~-I~Vwd~~s~~~~ 260 (1072)
.+-.+|.+++||.... .+. ..+......|..+.|. ||...|+++.+++ +.|.--......
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 8889999999997531 111 1112222335566664 4677888876554 555544444444
Q ss_pred cccccCCCeeeeEEecCCCEEEEEEcC---------CeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCCc
Q 001472 261 DSVDMGWSTLGDLCINDGKLLGCSFYR---------NSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSH 326 (1072)
Q Consensus 261 ~~l~~~~s~i~~l~spDGk~LAsgs~D---------GsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs~ 326 (1072)
..++.+...++..|.++|.+||+++.+ +.|++|..-+..+..+ .-....|++++|---|-+
T Consensus 253 vv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtl-----kvpg~~It~lsWEg~gLr 322 (1189)
T KOG2041|consen 253 VVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTL-----KVPGSCITGLSWEGTGLR 322 (1189)
T ss_pred eEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEE-----ecCCceeeeeEEcCCceE
Confidence 556777788888999999999988754 3556664433333333 234678999999876654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-07 Score=112.30 Aligned_cols=203 Identities=7% Similarity=-0.086 Sum_probs=133.9
Q ss_pred CceEEEEecCCCCeEEEEEecCCCcEEEEEEC---CCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEc---
Q 001472 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGD---DQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS--- 78 (1072)
Q Consensus 5 Gk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~---DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~--- 78 (1072)
|.-.+.+... +.+..-.|+|||..+++..+. +..|.++|+.+++..... ...+......|+|||+.|+....
T Consensus 178 g~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g 255 (419)
T PRK04043 178 LTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKG 255 (419)
T ss_pred CCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCC
Confidence 4444444444 367789999999654554333 356888999777654433 34555667889999987776433
Q ss_pred CCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 001472 79 TGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD-T--NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR 155 (1072)
Q Consensus 79 DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~D-G--sI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~ 155 (1072)
+..|+++|+.+++.. .+..+........|+|||+.|+..+.. | .|+++|+.+++....... .. ....|+|||+
T Consensus 256 ~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~ 331 (419)
T PRK04043 256 QPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKN 331 (419)
T ss_pred CcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCC
Confidence 357888898877643 344444434567899999988777643 2 688999987775443321 11 2358999999
Q ss_pred EEEEEecC---------CeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCC---eEEEEECCC
Q 001472 156 WVVSGGFD---------NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADR---TVKFWDLET 215 (1072)
Q Consensus 156 ~LaTGS~D---------GsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DG---tIrIWDl~t 215 (1072)
+|+..... ..|.+.|+.++.... +... +......|+|||+.|+....++ .|.++++..
T Consensus 332 ~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 332 YIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 98876643 378899998886533 3322 2334688999999887766432 366677654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.7e-07 Score=107.77 Aligned_cols=209 Identities=9% Similarity=-0.009 Sum_probs=135.4
Q ss_pred eEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCE-EEEEEcC---CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCE
Q 001472 39 KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVL-VLAGAST---GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEF 114 (1072)
Q Consensus 39 tV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~-LatGS~D---GsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~ 114 (1072)
.|.+-|..... ...+... ..+....|+|+|+. ++..+.+ ..|+++|+.+++...... ..+......|+|||+.
T Consensus 170 ~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK 246 (419)
T ss_pred eEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE
Confidence 45555554333 3323323 36778999999985 6654443 579999998887655433 5556677889999987
Q ss_pred EEEEeC---CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecC-C--eEEEEECCCCceEEEeeecCCceE
Q 001472 115 FASGCM---DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD-N--VVKVWDLTAGKLLHDFKFHEGHIR 188 (1072)
Q Consensus 115 LaSgs~---DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~D-G--sI~IWDl~tgk~i~~~~~h~g~It 188 (1072)
++.... +..|+++|+..+.. ..+..+........|+|||+.|+..+.. | .|+++|+.+++....... +. .
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~-~ 322 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK-N 322 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC-c
Confidence 765432 35799999887764 3344333334456899999988776632 2 688899988776443321 11 1
Q ss_pred EEEEcCCCcEEEEEECC---------CeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEEC--Cc--EEEEEec
Q 001472 189 SIDFHPLEFLLATGSAD---------RTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFD--DN--LKVYSWE 255 (1072)
Q Consensus 189 sLafSPdg~lLaTgS~D---------GtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsd--g~--I~Vwd~~ 255 (1072)
...|+|+|+.|+..+.. ..|.+.|+.++.... +... .......|+|||+.|+.... +. +.+++++
T Consensus 323 ~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 323 NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 24899999988877653 368888998876533 3222 23346899999998887532 22 4455554
Q ss_pred C
Q 001472 256 P 256 (1072)
Q Consensus 256 s 256 (1072)
.
T Consensus 401 g 401 (419)
T PRK04043 401 Y 401 (419)
T ss_pred C
Confidence 3
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-08 Score=111.20 Aligned_cols=248 Identities=18% Similarity=0.300 Sum_probs=180.9
Q ss_pred CceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEEC-CCCceEEEe-eCCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 001472 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAI-GKPTALMSL-CGLSSPVDSVAFDSAEVLVLAGASTGVI 82 (1072)
Q Consensus 5 Gk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl-~t~~~l~sl-~~hs~~ItsLafSPdG~~LatGS~DGsI 82 (1072)
-..++.+.||.+.|+....-|.. .-+++.+.|.+++||-- +.++.-..+ .....+++++.+.++...|++|-..|++
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e-~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKE-EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCC-CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 34567889999999998887766 45899999999999953 344433333 2345788999999999999999999999
Q ss_pred EEEEcC----CCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 001472 83 KLWDLE----ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVV 158 (1072)
Q Consensus 83 ~IWDl~----tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~La 158 (1072)
.-+.+. .....+....|...+..+-|+-...++++.+.|..+.---.+.+..+..+.-. ....++.|.-. +..
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQFDAL--YAF 169 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee-ccCCCCceeeE--EEE
Confidence 988653 34456666789999999999988899999999887765555555544333211 11112222111 455
Q ss_pred EEecCCeEEEEEC--CCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcE-EEeeCCCCCCeEEEEEe
Q 001472 159 SGGFDNVVKVWDL--TAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFEL-IGSTRPEVTGVHAITFH 235 (1072)
Q Consensus 159 TGS~DGsI~IWDl--~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~-i~~~~~h~~~VtsIafS 235 (1072)
.|...|.|....+ ..-.++..+.+|.+.+.+++|.+...+|++|..|..+.+||+--++- ...+..|...|..+..-
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 5666676665544 44567888999999999999999999999999999999999975443 34566777777777766
Q ss_pred CCCCEEEE-EECCcEEEEEecC
Q 001472 236 PDGRTLFS-GFDDNLKVYSWEP 256 (1072)
Q Consensus 236 PDG~~Las-Gsdg~I~Vwd~~s 256 (1072)
+--+.+++ +.|+.|.+|+++.
T Consensus 250 ~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhheeeeeccCCCeEEEEeccc
Confidence 65555555 6788899999863
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.5e-07 Score=117.00 Aligned_cols=238 Identities=12% Similarity=0.154 Sum_probs=159.9
Q ss_pred EEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeC--C------------CCCeEEEEEcCCCCEEEEEEc-CCeEE
Q 001472 19 NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCG--L------------SSPVDSVAFDSAEVLVLAGAS-TGVIK 83 (1072)
Q Consensus 19 t~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~--h------------s~~ItsLafSPdG~~LatGS~-DGsI~ 83 (1072)
..+++++.++.++++-..++.|.+||.. +..+..+.. . -.....++|+++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 4678888655777777788999999975 444433322 1 123578999998887666554 57899
Q ss_pred EEEcCCCeeEEEEeCC-----------------CCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecC----
Q 001472 84 LWDLEESKMVRTLTGH-----------------KSNCTAVEFHP-FGEFFASGCMDTNLKIWDIRKKGCIHTYKGH---- 141 (1072)
Q Consensus 84 IWDl~tgk~i~tl~~h-----------------~~~VtsLafSP-dg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h---- 141 (1072)
++|+.++.. .++.+. -..-..++|+| ++..+++...++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 999877653 333210 01235789999 4555666667889999998776542 22111
Q ss_pred -----------CCCeEEEEEcCCCCEEE-EEecCCeEEEEECCCCceEEEee-------------ec--------CCceE
Q 001472 142 -----------TRGINTIRFTPDGRWVV-SGGFDNVVKVWDLTAGKLLHDFK-------------FH--------EGHIR 188 (1072)
Q Consensus 142 -----------~~~VtsLafSPDG~~La-TGS~DGsI~IWDl~tgk~i~~~~-------------~h--------~g~It 188 (1072)
-.....++|+|+|++|+ +-+.++.|++||+.++....... .. .....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12356799999998554 45567899999998765321110 00 11246
Q ss_pred EEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeC-------------CCCCCeEEEEEeCCCCEEEEE-ECCcEEEEEe
Q 001472 189 SIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR-------------PEVTGVHAITFHPDGRTLFSG-FDDNLKVYSW 254 (1072)
Q Consensus 189 sLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~-------------~h~~~VtsIafSPDG~~LasG-sdg~I~Vwd~ 254 (1072)
.++|+++|.++++-..++.|++||..++....... ........++++++|+.+++. .++.|++|++
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 88999999988888889999999998776543221 111246789999999977774 4566999999
Q ss_pred cCCee
Q 001472 255 EPVIC 259 (1072)
Q Consensus 255 ~s~~~ 259 (1072)
.....
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 87653
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-08 Score=123.09 Aligned_cols=269 Identities=14% Similarity=0.169 Sum_probs=178.7
Q ss_pred CCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEc-CC------CCEEEEEEcCCeEEEEE
Q 001472 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFD-SA------EVLVLAGASTGVIKLWD 86 (1072)
Q Consensus 14 Hsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafS-Pd------G~~LatGS~DGsI~IWD 86 (1072)
|-+++.+..+-.+ ||++|. --.|.+||+..+..+..+.... .+.++ +. +.+++++..-+.+..=+
T Consensus 6 ~~~~l~~~~~~~~---~llag~-gp~i~~yd~~s~~li~~~~~~~----~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~ 77 (967)
T KOG0974|consen 6 SLGPLNLPQLVSD---YLLAGS-GPEILVYDLSSGCLIRHLIQSK----ILEVHRGEGKVKLLSGKIVTCAKSDEVYVKE 77 (967)
T ss_pred ccccccchhhccc---eeeecC-CCceEEeeCCchhHhhhhhhhc----ccccccccccceeccceEEEEEeecceeecc
Confidence 3456666666552 444443 3469999998876654443211 11111 12 23344444333332222
Q ss_pred cCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC----CeEEEEEcCCCCEEEEEec
Q 001472 87 LEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTR----GINTIRFTPDGRWVVSGGF 162 (1072)
Q Consensus 87 l~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~----~VtsLafSPDG~~LaTGS~ 162 (1072)
... +... ...+.|....+.-..+.++.++.+..+.+||...+..+..+..... ...-+.++++.-++++|+.
T Consensus 78 ~~~-~~~~---~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv 153 (967)
T KOG0974|consen 78 ASN-QIIE---RFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSV 153 (967)
T ss_pred hhh-hhhh---hccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccc
Confidence 111 1111 1223344455555677889999999999999988776665543221 1222345666778999999
Q ss_pred CCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEE-eeCCCCCCeEEEEEeCCCCEE
Q 001472 163 DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIG-STRPEVTGVHAITFHPDGRTL 241 (1072)
Q Consensus 163 DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~-~~~~h~~~VtsIafSPDG~~L 241 (1072)
-+.|.+|+....+.-..+.+|.+.|.++.|+-||.++++.+.|.++++|++.+.+... ..-+|...+..++|.|. .+
T Consensus 154 ~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i 231 (967)
T KOG0974|consen 154 FGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RI 231 (967)
T ss_pred cccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--ee
Confidence 9999999998444444588999999999999999999999999999999999988766 66788899999999998 56
Q ss_pred EE-EECCcEEEEEecCCeeeccc-ccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcC
Q 001472 242 FS-GFDDNLKVYSWEPVICHDSV-DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 242 as-Gsdg~I~Vwd~~s~~~~~~l-~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDld 296 (1072)
++ |-|-..++|.++........ ..+......+..++.-.+++++.||.+++|++.
T Consensus 232 ~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 65 45567999988765544221 122344455555666688899999999999874
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-06 Score=93.79 Aligned_cols=218 Identities=16% Similarity=0.126 Sum_probs=149.4
Q ss_pred EEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEc-CCCCEEEEEEcCCeEEEEEcCCCeeEEEEeC
Q 001472 20 CISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFD-SAEVLVLAGASTGVIKLWDLEESKMVRTLTG 98 (1072)
Q Consensus 20 ~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafS-PdG~~LatGS~DGsI~IWDl~tgk~i~tl~~ 98 (1072)
++.|.+..+.++++--..+.|..|+..++.... +.... ...+++. ++ ..|+++... .+.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEeec
Confidence 678998444777777788999999987765433 32222 6778888 55 455555554 466669988865444332
Q ss_pred -----CCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-EEecCC
Q 001472 99 -----HKSNCTAVEFHPFGEFFASGCMD--------TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVV-SGGFDN 164 (1072)
Q Consensus 99 -----h~~~VtsLafSPdg~~LaSgs~D--------GsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~La-TGS~DG 164 (1072)
.......+++.++|+++++.... |.|+.++.. ++...... .-...+.|+|+|+++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 34557899999999977765543 568888877 55444333 345578999999999776 455678
Q ss_pred eEEEEECCCCce-------EEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEe-C
Q 001472 165 VVKVWDLTAGKL-------LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFH-P 236 (1072)
Q Consensus 165 sI~IWDl~tgk~-------i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafS-P 236 (1072)
.|..|++..... ...+....+..-.+++..+|++.++....+.|.++|.. |+.+..+......+++++|. +
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~ 235 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGP 235 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEEST
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECC
Confidence 899999853221 11222222347889999999988888889999999988 88888777666689999994 6
Q ss_pred CCCEEEEEE
Q 001472 237 DGRTLFSGF 245 (1072)
Q Consensus 237 DG~~LasGs 245 (1072)
+.+.|++.+
T Consensus 236 ~~~~L~vTt 244 (246)
T PF08450_consen 236 DGKTLYVTT 244 (246)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEe
Confidence 666666543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.6e-07 Score=97.56 Aligned_cols=219 Identities=17% Similarity=0.041 Sum_probs=143.2
Q ss_pred CCeEEEEEcCCCeeEEEEeCCCCCeEEEE--EcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 001472 79 TGVIKLWDLEESKMVRTLTGHKSNCTAVE--FHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW 156 (1072)
Q Consensus 79 DGsI~IWDl~tgk~i~tl~~h~~~VtsLa--fSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~ 156 (1072)
+|.|..||..+|+.+....... .+.... ..+++.++++++.++.|+.||..+|+.+..+... ..+..... .++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~-~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPV-VDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEE-EETTE
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceee-ecccc
Confidence 6899999999999998886421 122222 3335777888889999999999999999888752 22222122 23456
Q ss_pred EEEEecCCeEEEEECCCCceEEEe-eecC---CceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCC----
Q 001472 157 VVSGGFDNVVKVWDLTAGKLLHDF-KFHE---GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG---- 228 (1072)
Q Consensus 157 LaTGS~DGsI~IWDl~tgk~i~~~-~~h~---g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~---- 228 (1072)
+++++.++.|..+|..+|+.+..+ .... ..........++..++++..++.|..+|+.+|+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 777778889999999999999884 3221 11122222223788888888999999999999998777553322
Q ss_pred ------eEEEEEeCCCCEEEEEECCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceee
Q 001472 229 ------VHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEP 302 (1072)
Q Consensus 229 ------VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~ 302 (1072)
+..-.+..++..+++..++.+..+|..++...-... ..........++..|++++.++.|.+||+.+++..+
T Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 159 ISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred eeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 122223334544444445543344888877443222 222333345677888888799999999999887665
|
... |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-06 Score=112.41 Aligned_cols=275 Identities=16% Similarity=0.175 Sum_probs=179.4
Q ss_pred CeEEEEEecCCCcEEEEEECCC---eEEEEECCCCc---eEEEee-----CCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 001472 17 NVNCISIGKKACRFLITGGDDQ---KVNLWAIGKPT---ALMSLC-----GLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1072)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DG---tV~IWDl~t~~---~l~sl~-----~hs~~ItsLafSPdG~~LatGS~DGsI~IW 85 (1072)
.+...+|......++++.+... .|.+....... .+..+. .....|.++.|-++...++++..+|.|.++
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 5777788777645444443322 24444333222 233332 234679999999999999999999999999
Q ss_pred ----EcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE------------------------EE
Q 001472 86 ----DLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCI------------------------HT 137 (1072)
Q Consensus 86 ----Dl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v------------------------~~ 137 (1072)
+..+.. +.....-...|.+++|+||+..|+..+.+|+|.+.+- +...+ .+
T Consensus 103 ~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQ 180 (928)
T PF04762_consen 103 REDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQ 180 (928)
T ss_pred EccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCc
Confidence 544332 2233334678999999999999999999999888752 11111 11
Q ss_pred Eec------------------------CCCCeEEEEEcCCCCEEEEEec---C---CeEEEEECCCCceEEEeeecCCce
Q 001472 138 YKG------------------------HTRGINTIRFTPDGRWVVSGGF---D---NVVKVWDLTAGKLLHDFKFHEGHI 187 (1072)
Q Consensus 138 l~~------------------------h~~~VtsLafSPDG~~LaTGS~---D---GsI~IWDl~tgk~i~~~~~h~g~I 187 (1072)
|+| ....-..|+|-.||.|||+.+. . ..|+||+-+ |........-.+--
T Consensus 181 F~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe 259 (928)
T PF04762_consen 181 FHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLE 259 (928)
T ss_pred cCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCcc
Confidence 110 1223467889999999998774 2 479999954 77666555445556
Q ss_pred EEEEEcCCCcEEEEEEC---CCeEEEEECCCCcEEEee----CCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCCee-
Q 001472 188 RSIDFHPLEFLLATGSA---DRTVKFWDLETFELIGST----RPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVIC- 259 (1072)
Q Consensus 188 tsLafSPdg~lLaTgS~---DGtIrIWDl~tge~i~~~----~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~- 259 (1072)
.+++|.|.|++||+... ...|.+|.-+ |-.-..| ......|..+.|++|+..|+....+.|.+|...+...
T Consensus 260 ~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWY 338 (928)
T PF04762_consen 260 GALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWY 338 (928)
T ss_pred CCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEE
Confidence 78999999999998764 3457777643 3332222 2345679999999999999998888899998876542
Q ss_pred -ecccccC--CCeeeeEEec-CCCEEEEEEcCCeEEEEEc
Q 001472 260 -HDSVDMG--WSTLGDLCIN-DGKLLGCSFYRNSVGIWVA 295 (1072)
Q Consensus 260 -~~~l~~~--~s~i~~l~sp-DGk~LAsgs~DGsVrIWDl 295 (1072)
...+... .......|.+ +...|.+.+.+|.+..++.
T Consensus 339 LKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 339 LKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred EEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 2222221 1222244444 3445666666677766654
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=6e-09 Score=132.31 Aligned_cols=197 Identities=16% Similarity=0.289 Sum_probs=157.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEe-CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE
Q 001472 56 GLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT-GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC 134 (1072)
Q Consensus 56 ~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~-~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~ 134 (1072)
.+-..|.++.=+|...+.++|+.||.+++|.+..+..+..+. .....|+.+.|+.+|+.+.++..||.+.+|.+. .+.
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKP 2284 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccc
Confidence 344667888888999999999999999999999888776665 234789999999999999999999999999976 566
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEe---cCCeEEEEECCCC-ceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEE
Q 001472 135 IHTYKGHTRGINTIRFTPDGRWVVSGG---FDNVVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF 210 (1072)
Q Consensus 135 v~~l~~h~~~VtsLafSPDG~~LaTGS---~DGsI~IWDl~tg-k~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrI 210 (1072)
....+.|......+.|-. ..+++++ .++.+.+||..-. ..-..-.+|.+.++++++.|...+|++|+.+|.|++
T Consensus 2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence 777788988888998875 5566655 4789999997432 211222789999999999999999999999999999
Q ss_pred EECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEE-ECCcEEEEEecCCeeeccccc
Q 001472 211 WDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDM 265 (1072)
Q Consensus 211 WDl~tge~i~~~~~h~~~VtsIafSPDG~~LasG-sdg~I~Vwd~~s~~~~~~l~~ 265 (1072)
||++..+.++.+.. ++ ...+++.| +.|.++||++........+..
T Consensus 2363 ~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2363 FDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred eehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 99998777666654 44 44566766 577899999987765555443
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4e-07 Score=104.17 Aligned_cols=171 Identities=18% Similarity=0.176 Sum_probs=134.7
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCC-eEEEEEcCCCeeEEEEeCCCCCeEEEE
Q 001472 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTG-VIKLWDLEESKMVRTLTGHKSNCTAVE 107 (1072)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DG-sI~IWDl~tgk~i~tl~~h~~~VtsLa 107 (1072)
.+++..+. |...|.+...+-.+. .++...|.-..+.-++.-++.|..|| .|-|+|..+++..+ +...-+.|.++.
T Consensus 333 d~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~ 408 (668)
T COG4946 333 DYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVK 408 (668)
T ss_pred cEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEE
Confidence 56666664 777777765554433 34667788888888888999999999 89999998877544 445678899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCC----eEEEEECCCCceEEEeeec
Q 001472 108 FHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN----VVKVWDLTAGKLLHDFKFH 183 (1072)
Q Consensus 108 fSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DG----sI~IWDl~tgk~i~~~~~h 183 (1072)
.+++|++++++.....|.++|+.++.....-+...+-|..+.|+|+++++|.+--+| .|++||+..++....-. .
T Consensus 409 vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ 487 (668)
T COG4946 409 VSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-P 487 (668)
T ss_pred EcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-C
Confidence 999999999999999999999999987665566667899999999999999987665 69999999887654433 3
Q ss_pred CCceEEEEEcCCCcEEEEEEC
Q 001472 184 EGHIRSIDFHPLEFLLATGSA 204 (1072)
Q Consensus 184 ~g~ItsLafSPdg~lLaTgS~ 204 (1072)
.+.=.+-+|.|++++|..-+.
T Consensus 488 ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 488 TAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred cccccCcccCCCCcEEEEEec
Confidence 334456789999998877653
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.2e-07 Score=105.16 Aligned_cols=255 Identities=12% Similarity=0.011 Sum_probs=160.5
Q ss_pred EEEEEECCCeEEEEECCCCceEEEeeCCCCCeEE-EEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCe-----
Q 001472 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS-VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNC----- 103 (1072)
Q Consensus 30 lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~Its-LafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~V----- 103 (1072)
.++.++.+|.+..+|..+++.+....... .+.+ ... .+..+++++.+|.|..+|..+|+.+..+......+
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 56778889999999999999888775432 2221 112 24567778889999999999999988776431111
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC-------CeEEEEEcC--CCCEEEEEecCCeEEEEECCCC
Q 001472 104 TAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTR-------GINTIRFTP--DGRWVVSGGFDNVVKVWDLTAG 174 (1072)
Q Consensus 104 tsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~-------~VtsLafSP--DG~~LaTGS~DGsI~IWDl~tg 174 (1072)
..... .+..++.++.+|.++.+|..+|+.+........ ....+..+| .+..+++++.+|.+..+|..+|
T Consensus 199 ~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 199 SAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred CCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 11111 134577778899999999999987766532110 011111222 2456777788999999999999
Q ss_pred ceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCC-CeEEEEEeCCCCEEEEEECCcEEEEE
Q 001472 175 KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVT-GVHAITFHPDGRTLFSGFDDNLKVYS 253 (1072)
Q Consensus 175 k~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~-~VtsIafSPDG~~LasGsdg~I~Vwd 253 (1072)
+.+...... ....+.. .+..|++++.+|.++.+|..+++.+........ ...+..+ -+|..++...++.+.++|
T Consensus 277 ~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 277 QIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL-YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE-ECCEEEEEeCCCEEEEEE
Confidence 988765421 1222222 456777888999999999999988765432211 1222222 245554445566788888
Q ss_pred ecCCeeecccccCCC-eeeeEEecCCCEEEEEEcCCeEEEEEc
Q 001472 254 WEPVICHDSVDMGWS-TLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1072)
Q Consensus 254 ~~s~~~~~~l~~~~s-~i~~l~spDGk~LAsgs~DGsVrIWDl 295 (1072)
..++........... ....-.. .+..|++++.||.|..++.
T Consensus 352 ~~tG~~~~~~~~~~~~~~s~P~~-~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 352 REDGRFVAQQKVDSSGFLSEPVV-ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCCCEEEEEEcCCCcceeCCEE-ECCEEEEEeCCceEEEEeC
Confidence 888776655443221 1111112 2446777789998887753
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-07 Score=113.45 Aligned_cols=211 Identities=12% Similarity=0.080 Sum_probs=160.9
Q ss_pred CceEEEEecCCCCeEEEEEecCC-----------CcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcC---CC
Q 001472 5 GYKLQEFVAHSANVNCISIGKKA-----------CRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDS---AE 70 (1072)
Q Consensus 5 Gk~I~~L~gHsg~Vt~IafSPdg-----------~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSP---dG 70 (1072)
-+.++.+..|...|+.+.|.|.. .-+||++...|.|.|||+..+..+..+..+..++..++|-+ +.
T Consensus 45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~S 124 (1062)
T KOG1912|consen 45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDS 124 (1062)
T ss_pred hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcc
Confidence 46678889999999999998742 13678888899999999998888888888999999999976 33
Q ss_pred -CEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC-------CeEEEEEecC
Q 001472 71 -VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHP-FGEFFASGCMDTNLKIWDIRK-------KGCIHTYKGH 141 (1072)
Q Consensus 71 -~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSP-dg~~LaSgs~DGsI~IWDlrt-------gk~v~~l~~h 141 (1072)
..|++-.....|.+|+..+|+.............|+.+.| |.+.|+..+..|.+.+.+.-. ++..+.-..|
T Consensus 125 rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~ 204 (1062)
T KOG1912|consen 125 RDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDH 204 (1062)
T ss_pred hheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCc
Confidence 4566666678999999999999988877777788899999 556777777888888876531 2222222222
Q ss_pred CC-------------------------CeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCC
Q 001472 142 TR-------------------------GINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE 196 (1072)
Q Consensus 142 ~~-------------------------~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg 196 (1072)
.. ....++|+|.-+.++.......|.++|++-..++.......+.+.-+.|-|++
T Consensus 205 Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~ 284 (1062)
T KOG1912|consen 205 SDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDP 284 (1062)
T ss_pred cchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCC
Confidence 11 01235678866655556667889999999888888887777777778888864
Q ss_pred --cEEEEEECCCeEEEEECCC
Q 001472 197 --FLLATGSADRTVKFWDLET 215 (1072)
Q Consensus 197 --~lLaTgS~DGtIrIWDl~t 215 (1072)
..|+++..||.+.+|--+.
T Consensus 285 ~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 285 RRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred CcceEEEEecCCeEEEEEeec
Confidence 5799999999999997543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.1e-07 Score=115.45 Aligned_cols=236 Identities=12% Similarity=0.122 Sum_probs=156.5
Q ss_pred EEEEEcCC-CCEEEEEEcCCeEEEEEcCCCeeEEEEeC-C-------------CCCeEEEEEcCCCCEEEEEeC-CCeEE
Q 001472 62 DSVAFDSA-EVLVLAGASTGVIKLWDLEESKMVRTLTG-H-------------KSNCTAVEFHPFGEFFASGCM-DTNLK 125 (1072)
Q Consensus 62 tsLafSPd-G~~LatGS~DGsI~IWDl~tgk~i~tl~~-h-------------~~~VtsLafSPdg~~LaSgs~-DGsI~ 125 (1072)
..+++++. +..+++-+.++.|.+||.. +..+..+.. . -..-..+++.++++.|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788874 5566666778899999975 444433322 1 112478899998887766654 56799
Q ss_pred EEECCCCeEEEEEecC-----------------CCCeEEEEEcC-CCCEEEEEecCCeEEEEECCCCceEEEeee-----
Q 001472 126 IWDIRKKGCIHTYKGH-----------------TRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTAGKLLHDFKF----- 182 (1072)
Q Consensus 126 IWDlrtgk~v~~l~~h-----------------~~~VtsLafSP-DG~~LaTGS~DGsI~IWDl~tgk~i~~~~~----- 182 (1072)
++|+.++. +..+.+. -...+.++|+| ++.++++.+.++.|++||..++... .+.+
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 99987765 3333210 11246899999 5666677777899999999876543 2211
Q ss_pred ----------cCCceEEEEEcCCCcEE-EEEECCCeEEEEECCCCcEEEee-------------CCC--------CCCeE
Q 001472 183 ----------HEGHIRSIDFHPLEFLL-ATGSADRTVKFWDLETFELIGST-------------RPE--------VTGVH 230 (1072)
Q Consensus 183 ----------h~g~ItsLafSPdg~lL-aTgS~DGtIrIWDl~tge~i~~~-------------~~h--------~~~Vt 230 (1072)
.-.....++|+|++..| ++.+.++.|++||+.++...... ... .....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 01235679999998855 45556789999999876532111 000 11246
Q ss_pred EEEEeCCCCEEEEE-ECCcEEEEEecCCeeecccccC--------------CCeeeeEEecCCCEEEEEEcCCeEEEEEc
Q 001472 231 AITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDMG--------------WSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1072)
Q Consensus 231 sIafSPDG~~LasG-sdg~I~Vwd~~s~~~~~~l~~~--------------~s~i~~l~spDGk~LAsgs~DGsVrIWDl 295 (1072)
.++|+++|..+++. .++.|++||............+ ..+....+.++|+++++.+.++.|++||+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 89999999877664 4567999998876554322111 24556677789998888889999999999
Q ss_pred CCCce
Q 001472 296 DVSHV 300 (1072)
Q Consensus 296 ds~~l 300 (1072)
+.+..
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 76654
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.2e-08 Score=116.20 Aligned_cols=283 Identities=17% Similarity=0.178 Sum_probs=200.2
Q ss_pred CCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCC------------CEEEEEEcCCe
Q 001472 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE------------VLVLAGASTGV 81 (1072)
Q Consensus 14 Hsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG------------~~LatGS~DGs 81 (1072)
|...-.++.|+|.| +||-|+. ..|.+-|..+.+.+..+..|...|+.+.|.|.. -.|+++...|.
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 33456789999998 6666665 578999999999999999999999999998621 25666777899
Q ss_pred EEEEEcCCCeeEEEEeCCCCCeEEEEEcC---CC-CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCE
Q 001472 82 IKLWDLEESKMVRTLTGHKSNCTAVEFHP---FG-EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP-DGRW 156 (1072)
Q Consensus 82 I~IWDl~tgk~i~tl~~h~~~VtsLafSP---dg-~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSP-DG~~ 156 (1072)
|.+||...+..+..+..|..++..++|-+ +. .+|++-.....|.+|+..+|+.++.+........|+.+.| |.+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 99999999998888999999999999976 33 3566667788999999999999999887777788899999 6777
Q ss_pred EEEEecCCeEEEEECCC-------CceEEEeeecCC-------------------------ceEEEEEcCCCcEEEEEEC
Q 001472 157 VVSGGFDNVVKVWDLTA-------GKLLHDFKFHEG-------------------------HIRSIDFHPLEFLLATGSA 204 (1072)
Q Consensus 157 LaTGS~DGsI~IWDl~t-------gk~i~~~~~h~g-------------------------~ItsLafSPdg~lLaTgS~ 204 (1072)
++.-+..|.+.+.+.-. |+..+.-..|.. ....++|+|.-+.++....
T Consensus 171 ~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~ 250 (1062)
T KOG1912|consen 171 FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF 250 (1062)
T ss_pred EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe
Confidence 77777788887776532 222222111111 0124577887655555566
Q ss_pred CCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCC--EEEEE-ECCcEEEEEecCCeeec-------ccccC--------
Q 001472 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGR--TLFSG-FDDNLKVYSWEPVICHD-------SVDMG-------- 266 (1072)
Q Consensus 205 DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~--~LasG-sdg~I~Vwd~~s~~~~~-------~l~~~-------- 266 (1072)
...+.++|++-..++.......+++.-+.|-|+++ .|++. .+|.+.+|--+...... .++.+
T Consensus 251 prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~ 330 (1062)
T KOG1912|consen 251 PRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRP 330 (1062)
T ss_pred ccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEee
Confidence 78899999998888888887888888888888764 55565 56668888654311100 01111
Q ss_pred ---CCeeeeEEecC-CCEEEEEEcCCeEEEEEcCCCc
Q 001472 267 ---WSTLGDLCIND-GKLLGCSFYRNSVGIWVADVSH 299 (1072)
Q Consensus 267 ---~s~i~~l~spD-Gk~LAsgs~DGsVrIWDlds~~ 299 (1072)
..+....+.|. ...++.-..+|.+.+|.+..+.
T Consensus 331 m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r 367 (1062)
T KOG1912|consen 331 MEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR 367 (1062)
T ss_pred chhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence 12222233333 4455555577888899876544
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.2e-07 Score=102.14 Aligned_cols=251 Identities=17% Similarity=0.181 Sum_probs=172.5
Q ss_pred cEEEEEECCCeEEEEECC-CCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeC------CC-
Q 001472 29 RFLITGGDDQKVNLWAIG-KPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG------HK- 100 (1072)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~-t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~------h~- 100 (1072)
++.+....+|.-.||... +|+.+....... .-++=..+.||+.++.. ..|.|++||..+......--+ ..
T Consensus 237 RvYFlsD~eG~GnlYSvdldGkDlrrHTnFt-dYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~ 314 (668)
T COG4946 237 RVYFLSDHEGVGNLYSVDLDGKDLRRHTNFT-DYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQ 314 (668)
T ss_pred eEEEEecccCccceEEeccCCchhhhcCCch-hccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCcccccccc
Confidence 344455566666666542 222222211111 12233345688888774 568999999876543221101 00
Q ss_pred ----CCeEEEE-EcC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCC-eEEEEECCC
Q 001472 101 ----SNCTAVE-FHP-FGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN-VVKVWDLTA 173 (1072)
Q Consensus 101 ----~~VtsLa-fSP-dg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DG-sI~IWDl~t 173 (1072)
.+..-+. |++ +|++++..+ .|...|.+...+-.+. + ++.+.|.-..+.-+++-++.|..|| .|-|||..+
T Consensus 315 ~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq-v-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~ 391 (668)
T COG4946 315 PKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ-V-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG 391 (668)
T ss_pred ccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE-c-CCCCceEEEEEccCCcceEEeccCCceEEEEecCC
Confidence 0111111 333 578888876 5778888765554443 3 3566688888888888899999999 999999987
Q ss_pred CceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEEC-----Cc
Q 001472 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFD-----DN 248 (1072)
Q Consensus 174 gk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsd-----g~ 248 (1072)
++.. .+...-+.|.++..+++|++++++.....|.++|+.++.....-....+-|+.+.|+|+++++|-+.- ..
T Consensus 392 ~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~ 470 (668)
T COG4946 392 GEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQS 470 (668)
T ss_pred ceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeee
Confidence 7654 44556788999999999999999999999999999999877666667788999999999999998743 34
Q ss_pred EEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEE
Q 001472 249 LKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSF 285 (1072)
Q Consensus 249 I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs 285 (1072)
|++||....+..........-...++-+||++|..-+
T Consensus 471 Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 471 IKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 9999999887766555444556677778999876544
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-06 Score=101.25 Aligned_cols=268 Identities=9% Similarity=-0.004 Sum_probs=165.0
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCC-CeE------EEEEcC--CCCEEEEEEcCCeEEEEEcCCCeeEEEEeCC
Q 001472 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSS-PVD------SVAFDS--AEVLVLAGASTGVIKLWDLEESKMVRTLTGH 99 (1072)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~-~It------sLafSP--dG~~LatGS~DGsI~IWDl~tgk~i~tl~~h 99 (1072)
..+++++.+|.|.-+|..+++.+........ .+. .+.-.| .+..+++++.+|.++.+|..+|+.+......
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 149 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVA 149 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCC
Confidence 3677788889999999999998877643220 000 000011 3567788888999999999999988877643
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEE-EEEcC--CCCEEEEEecCCeEEEEECCCCce
Q 001472 100 KSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINT-IRFTP--DGRWVVSGGFDNVVKVWDLTAGKL 176 (1072)
Q Consensus 100 ~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~Vts-LafSP--DG~~LaTGS~DGsI~IWDl~tgk~ 176 (1072)
.......... +..++++..+|.|+.+|..+|+.+..+......+.. ..-+| .+..++.++.+|.+..+|..+|+.
T Consensus 150 ~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~ 227 (394)
T PRK11138 150 GEALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQL 227 (394)
T ss_pred CceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChh
Confidence 3221112222 456777888999999999999998887643111100 00112 133567778899999999999988
Q ss_pred EEEeeecCC-------ceEEEEEcC--CCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECC
Q 001472 177 LHDFKFHEG-------HIRSIDFHP--LEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247 (1072)
Q Consensus 177 i~~~~~h~g-------~ItsLafSP--dg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg 247 (1072)
+........ ....+..+| .+..+++++.+|.+..+|..+|+.+...... ....+.. .++..++...++
T Consensus 228 ~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~-~~~~vy~~~~~g 304 (394)
T PRK11138 228 IWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV-DGGRIYLVDQND 304 (394)
T ss_pred hheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE-ECCEEEEEcCCC
Confidence 776542110 011111222 2456777788999999999999887765322 1122222 234444445567
Q ss_pred cEEEEEecCCeeeccccc--CCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeee
Q 001472 248 NLKVYSWEPVICHDSVDM--GWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPY 303 (1072)
Q Consensus 248 ~I~Vwd~~s~~~~~~l~~--~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~ 303 (1072)
.+..++..++...-.... .......+ . .+.+|+.++.+|.|.++|.+.+.....
T Consensus 305 ~l~ald~~tG~~~W~~~~~~~~~~~sp~-v-~~g~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 305 RVYALDTRGGVELWSQSDLLHRLLTAPV-L-YNGYLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred eEEEEECCCCcEEEcccccCCCcccCCE-E-ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 787888776654332211 11111111 1 345677788999999999887766544
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-06 Score=92.81 Aligned_cols=216 Identities=18% Similarity=0.097 Sum_probs=144.6
Q ss_pred CCeEEEEECCCCceEEEeeCCCCCeEEEE--EcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCE
Q 001472 37 DQKVNLWAIGKPTALMSLCGLSSPVDSVA--FDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEF 114 (1072)
Q Consensus 37 DGtV~IWDl~t~~~l~sl~~hs~~ItsLa--fSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~ 114 (1072)
+|.|..||..+++.+....... .+.... ..+++.++++++.++.|..||..+|+.+..+.. ...+.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 6899999999999988885421 122222 233577788888999999999999999888875 33322222 223556
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEE-ecCC---CCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCc----
Q 001472 115 FASGCMDTNLKIWDIRKKGCIHTY-KGHT---RGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGH---- 186 (1072)
Q Consensus 115 LaSgs~DGsI~IWDlrtgk~v~~l-~~h~---~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~---- 186 (1072)
+++++.++.|+.+|..+|+.+... .... ..........++..++++..++.|..+|+.+|+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 777778899999999999998884 3221 11122223334778888888999999999999999888764322
Q ss_pred ------e-EEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEE-CCcEEEEEecCCe
Q 001472 187 ------I-RSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVI 258 (1072)
Q Consensus 187 ------I-tsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGs-dg~I~Vwd~~s~~ 258 (1072)
+ ..+.+. ++ .++.++.+|.+..+|+.+++.+.... ...+..+ ...++..|+++. ++.+..||..+++
T Consensus 159 ~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 159 ISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred eeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 1 223333 44 67777777764444999998765433 2333332 345667777665 7789999998876
Q ss_pred ee
Q 001472 259 CH 260 (1072)
Q Consensus 259 ~~ 260 (1072)
..
T Consensus 234 ~~ 235 (238)
T PF13360_consen 234 VV 235 (238)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
... |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=117.53 Aligned_cols=280 Identities=15% Similarity=0.251 Sum_probs=181.7
Q ss_pred eEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECC-------CCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcC
Q 001472 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIG-------KPTALMSLCGLSSPVDSVAFDSAEVLVLAGAST 79 (1072)
Q Consensus 7 ~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~-------t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~D 79 (1072)
.+..|.||...|..++--.+. +-+++++.|.+|++|.+. +..+.+++..|+.+|..+.|-.+-++++++ |
T Consensus 727 rL~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred eeecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence 466789999999998755444 678999999999999883 223566788999999999999888887764 7
Q ss_pred CeEEEEEcCCCeeEEEEeC--CCCCeEEEEEcCC--CCEEEEE-eCCCeEEEEECCCCeEEEEEe-----cCCCCeEEEE
Q 001472 80 GVIKLWDLEESKMVRTLTG--HKSNCTAVEFHPF--GEFFASG-CMDTNLKIWDIRKKGCIHTYK-----GHTRGINTIR 149 (1072)
Q Consensus 80 GsI~IWDl~tgk~i~tl~~--h~~~VtsLafSPd--g~~LaSg-s~DGsI~IWDlrtgk~v~~l~-----~h~~~VtsLa 149 (1072)
|.|++||.--|+++..+.. ..+.+..+...++ ...++.| +...+|+++|.+.++.+..++ +....+.+++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 8899999877766543321 1222333333333 3344444 567899999999888766654 3445689999
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEE-EECCCCcEEEeeCCCCCC
Q 001472 150 FTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF-WDLETFELIGSTRPEVTG 228 (1072)
Q Consensus 150 fSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrI-WDl~tge~i~~~~~h~~~ 228 (1072)
.-+.|++++.+-.+|.|.+.|.++|+.+..+.........++ .|....|+....|.++.+ |-.-.+.......+...+
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppep 962 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEP 962 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcc
Confidence 999999999999999999999999999888775544444444 345566776777888888 877666555444443332
Q ss_pred eEEEEEeCCCCEEEEEECCc-EEEEEecC-------CeeecccccCCCeeeeEEecCCCEEEEEEcCCeEEE
Q 001472 229 VHAITFHPDGRTLFSGFDDN-LKVYSWEP-------VICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGI 292 (1072)
Q Consensus 229 VtsIafSPDG~~LasGsdg~-I~Vwd~~s-------~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrI 292 (1072)
..-+ ..-|..|++...|+ +.||--.. ......-.........+..|-..-+..|...|.|.+
T Consensus 963 ahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 963 AHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 2211 11244455554443 44443110 000111111122233333455555566667777664
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-08 Score=117.03 Aligned_cols=270 Identities=17% Similarity=0.191 Sum_probs=178.9
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC-------CeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCe
Q 001472 51 LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE-------SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123 (1072)
Q Consensus 51 l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~t-------gk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGs 123 (1072)
+..+.+|...|..++--.+.+.+++++.|.+|++|.++. ..+..++..|..+|.++.|..+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 455678888888887777888899999999999999863 23667788999999999999888888765 788
Q ss_pred EEEEECCCCeEEEEEec--CCCCeEEEEEcC--CCCEEEEE-ecCCeEEEEECCCCceEEEeee-----cCCceEEEEEc
Q 001472 124 LKIWDIRKKGCIHTYKG--HTRGINTIRFTP--DGRWVVSG-GFDNVVKVWDLTAGKLLHDFKF-----HEGHIRSIDFH 193 (1072)
Q Consensus 124 I~IWDlrtgk~v~~l~~--h~~~VtsLafSP--DG~~LaTG-S~DGsI~IWDl~tgk~i~~~~~-----h~g~ItsLafS 193 (1072)
|++||.--+..+..+.. ..+.+..+...+ +..+++.| +...+|+++|.+.++...+++. ..+-+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 99999877766553321 112233333333 33344444 6788999999999988777764 34558899999
Q ss_pred CCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEE-EECCcEEE-EEecCCeeecccccCCCeee
Q 001472 194 PLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKV-YSWEPVICHDSVDMGWSTLG 271 (1072)
Q Consensus 194 Pdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~Las-Gsdg~I~V-wd~~s~~~~~~l~~~~s~i~ 271 (1072)
+.|++++.+-.+|+|.+.|.++|+.+....+.......++- |..+.|+. ..+..+.| |..-.+..+-.....-.+..
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~kpppepah 964 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH 964 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchh
Confidence 99999999999999999999999998887776655555553 34455554 45555666 65444443322221111111
Q ss_pred eEEecCCCEEEEEEcCCeEEEEEcCCCcee---eeecCCCCCCCCCeeEEEECCCCC
Q 001472 272 DLCINDGKLLGCSFYRNSVGIWVADVSHVE---PYGVGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 272 ~l~spDGk~LAsgs~DGsVrIWDlds~~l~---~~~v~~~~~~~~~ItsVaFSPDGs 325 (1072)
. .-.-|..|++...++.+.+|.- ..+.. ......+....+..+.++--|-..
T Consensus 965 f-lqsvgpSLV~a~~Gn~lgVYad-~a~~ha~stitKiR~d~f~G~lTala~LPLN~ 1019 (1034)
T KOG4190|consen 965 F-LQSVGPSLVTAQNGNILGVYAD-SAELHAESTITKIRPDEFPGTLTALAPLPLNC 1019 (1034)
T ss_pred h-hhccCceeEEeccCcEEEEEec-chhhhhhhhhccccccccCCccceeeeccccc
Confidence 1 1123556777777788888842 12111 111222244455666666555333
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.9e-07 Score=100.65 Aligned_cols=227 Identities=22% Similarity=0.247 Sum_probs=156.0
Q ss_pred CCeEEEEEec---CCCcEEEEEECCCeEEEEECCCCceEEEeeCCC------CCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 001472 16 ANVNCISIGK---KACRFLITGGDDQKVNLWAIGKPTALMSLCGLS------SPVDSVAFDSAEVLVLAGASTGVIKLWD 86 (1072)
Q Consensus 16 g~Vt~IafSP---dg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs------~~ItsLafSPdG~~LatGS~DGsI~IWD 86 (1072)
..+..+.|.. +|.-.++-+..+|.|.+|..........+.+.. ....++.|++.+..++++-.+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 3455555542 232256677778999999775544444443322 1245788999999999999999999666
Q ss_pred cCCCee--EEEEeCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECC-CCeEEEE-EecCCCCeEEEEEcC-CCCEEEEE
Q 001472 87 LEESKM--VRTLTGHKSNCTAVEFHPF-GEFFASGCMDTNLKIWDIR-KKGCIHT-YKGHTRGINTIRFTP-DGRWVVSG 160 (1072)
Q Consensus 87 l~tgk~--i~tl~~h~~~VtsLafSPd-g~~LaSgs~DGsI~IWDlr-tgk~v~~-l~~h~~~VtsLafSP-DG~~LaTG 160 (1072)
...... ++.++.|.-+++.+.|+.. .+.+++|+.||.+..||++ .++.+.. .+.|..+|.+|.-+| .+.++++|
T Consensus 150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG 229 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG 229 (339)
T ss_pred cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe
Confidence 555443 3478889999999999764 4688999999999999999 4444444 556888899999887 57799999
Q ss_pred ecCCeEEEEECCC-CceEEEeeecCCceEEEEEcCCC--cEEEEEECCCeEEEEECCCC--c---EEEeeCCCCCCeEEE
Q 001472 161 GFDNVVKVWDLTA-GKLLHDFKFHEGHIRSIDFHPLE--FLLATGSADRTVKFWDLETF--E---LIGSTRPEVTGVHAI 232 (1072)
Q Consensus 161 S~DGsI~IWDl~t-gk~i~~~~~h~g~ItsLafSPdg--~lLaTgS~DGtIrIWDl~tg--e---~i~~~~~h~~~VtsI 232 (1072)
+.|-.|++||.+. ++++..-. -.|.|..+.++|.- .+|+++-.+| .+|.+...+ + .......|.+-+..-
T Consensus 230 sYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~ 307 (339)
T KOG0280|consen 230 SYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGG 307 (339)
T ss_pred ccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeecc
Confidence 9999999999984 56665554 34789999999953 3444443333 566665542 2 223344555555566
Q ss_pred EEeCCCCEEEEE
Q 001472 233 TFHPDGRTLFSG 244 (1072)
Q Consensus 233 afSPDG~~LasG 244 (1072)
.|.....+|+++
T Consensus 308 DWd~~~~~lATC 319 (339)
T KOG0280|consen 308 DWDSKDSFLATC 319 (339)
T ss_pred ccccccceeeee
Confidence 664444566664
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.3e-07 Score=104.46 Aligned_cols=278 Identities=18% Similarity=0.193 Sum_probs=194.4
Q ss_pred cCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCC---CceEEEeeCCCCCeEEEEEcCCCCEEEEEEc-CCeEEEEEcC
Q 001472 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGK---PTALMSLCGLSSPVDSVAFDSAEVLVLAGAS-TGVIKLWDLE 88 (1072)
Q Consensus 13 gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t---~~~l~sl~~hs~~ItsLafSPdG~~LatGS~-DGsI~IWDl~ 88 (1072)
-|.+-|+.+..... .++.+++.||.++.|.-.. -+.+..+..|...|.+++.+-+|..+.+++. |..++++|++
T Consensus 7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeeehh--heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 47788888776664 5999999999999997532 2334445678888899999999999999887 9999999998
Q ss_pred CCeeEEEEeCCCCCeEEEEE-cCCCC---EEEEE-eCCCeEEEEECCCCeE--EEEEecCCCCeEEEEEcCCCCEEEEEe
Q 001472 89 ESKMVRTLTGHKSNCTAVEF-HPFGE---FFASG-CMDTNLKIWDIRKKGC--IHTYKGHTRGINTIRFTPDGRWVVSGG 161 (1072)
Q Consensus 89 tgk~i~tl~~h~~~VtsLaf-SPdg~---~LaSg-s~DGsI~IWDlrtgk~--v~~l~~h~~~VtsLafSPDG~~LaTGS 161 (1072)
+-..+.-++...-+= .++| ...|. .++++ -.+|.+.++|-....+ ...-+-|..+|.++.+.+-+..+++..
T Consensus 85 n~DminmiKL~~lPg-~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPG-FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred ccchhhhcccccCCC-ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 766543333211111 1223 22231 34443 3468999999765442 233345889999999999999999999
Q ss_pred cCCeEEEEECCC------CceEEE---------eeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCC--
Q 001472 162 FDNVVKVWDLTA------GKLLHD---------FKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP-- 224 (1072)
Q Consensus 162 ~DGsI~IWDl~t------gk~i~~---------~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~-- 224 (1072)
..|.|..|.... .+.... +.-......++.|+|++..+.+-+.|..|+++++.+++.+..+..
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~ 243 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVL 243 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccc
Confidence 999999998762 112222 222345678999999999999999999999999998875443211
Q ss_pred ------------------------------C-CCCeEEEEEeCCCCEEEEEECCcEEEEEecCCeeecccccCC------
Q 001472 225 ------------------------------E-VTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGW------ 267 (1072)
Q Consensus 225 ------------------------------h-~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~~------ 267 (1072)
+ ...-..+.|...|++|+.|+-=+|+|.++.++.+...+.-..
T Consensus 244 t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~gk~e~ir~~~ 323 (558)
T KOG0882|consen 244 TDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRILGKDEAIRFTR 323 (558)
T ss_pred hhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEeccchhhhhhh
Confidence 0 112457789999999999998899999999887755431110
Q ss_pred ------------CeeeeE--------EecCCCEEEEEEcCCeEEEE
Q 001472 268 ------------STLGDL--------CINDGKLLGCSFYRNSVGIW 293 (1072)
Q Consensus 268 ------------s~i~~l--------~spDGk~LAsgs~DGsVrIW 293 (1072)
...... +-+|..+++|+...+.++++
T Consensus 324 ~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 324 LSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred HHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 000000 22456677778788888888
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-05 Score=89.86 Aligned_cols=226 Identities=18% Similarity=0.170 Sum_probs=163.0
Q ss_pred eEEEEEecCCCcEEEEEECCCe-EEEEECCCCceEEEeeCCCCCe--EEEEEcCCCCEEEEEEc-----CCeEEEEEcC-
Q 001472 18 VNCISIGKKACRFLITGGDDQK-VNLWAIGKPTALMSLCGLSSPV--DSVAFDSAEVLVLAGAS-----TGVIKLWDLE- 88 (1072)
Q Consensus 18 Vt~IafSPdg~~lLaTGs~DGt-V~IWDl~t~~~l~sl~~hs~~I--tsLafSPdG~~LatGS~-----DGsI~IWDl~- 88 (1072)
...++.+|.....++.+-.-|. ..+||..++.....+....+.- -.-.||+||++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 4567889976678888877775 6789999998887765433322 24789999999998644 4899999998
Q ss_pred CCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeC------------------CCeEEEEECCCCeEEEEEe----cCCCCeE
Q 001472 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM------------------DTNLKIWDIRKKGCIHTYK----GHTRGIN 146 (1072)
Q Consensus 89 tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~------------------DGsI~IWDlrtgk~v~~l~----~h~~~Vt 146 (1072)
+.+.+.++..|.-.-..+.|.|||+.|+++.. +..+.+.|..+|+.+.... .|...|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 66788888888777788999999988888731 2356677888888876643 3667899
Q ss_pred EEEEcCCCCEEEEEecCC-------eEEEEECCCCceEEEee-------ecCCceEEEEEcCCCcEEEEEE-CCCeEEEE
Q 001472 147 TIRFTPDGRWVVSGGFDN-------VVKVWDLTAGKLLHDFK-------FHEGHIRSIDFHPLEFLLATGS-ADRTVKFW 211 (1072)
Q Consensus 147 sLafSPDG~~LaTGS~DG-------sI~IWDl~tgk~i~~~~-------~h~g~ItsLafSPdg~lLaTgS-~DGtIrIW 211 (1072)
.+++.++|..++..-..| .|.+++. ++.+..+. ...+.+-+|++++++.++++.+ ..+.+.+|
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 999999987555443333 2444443 33233222 2356789999999998776555 57789999
Q ss_pred ECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCc
Q 001472 212 DLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN 248 (1072)
Q Consensus 212 Dl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~ 248 (1072)
|..++..+...... .+..++..+++ +++++..+.
T Consensus 245 d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 245 DAATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred ECCCCCEeeccccC--ceeeeeecCCc-eEEeCCCcc
Confidence 99999988766443 36677777777 666655555
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.1e-06 Score=92.06 Aligned_cols=221 Identities=17% Similarity=0.151 Sum_probs=155.3
Q ss_pred eEEEEEcC-CCCEEEEEEcCC-eEEEEEcCCCeeEEEEeCCCCCe--EEEEEcCCCCEEEEEeC-----CCeEEEEECC-
Q 001472 61 VDSVAFDS-AEVLVLAGASTG-VIKLWDLEESKMVRTLTGHKSNC--TAVEFHPFGEFFASGCM-----DTNLKIWDIR- 130 (1072)
Q Consensus 61 ItsLafSP-dG~~LatGS~DG-sI~IWDl~tgk~i~tl~~h~~~V--tsLafSPdg~~LaSgs~-----DGsI~IWDlr- 130 (1072)
...++.+| .+..++.+-.-| ...+||..+++....+....+.- -..+|++||++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 35678888 455566666655 57799999999887765433332 23689999999998744 4889999998
Q ss_pred CCeEEEEEecCCCCeEEEEEcCCCCEEEEEec------------------CCeEEEEECCCCceEEEee----ecCCceE
Q 001472 131 KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF------------------DNVVKVWDLTAGKLLHDFK----FHEGHIR 188 (1072)
Q Consensus 131 tgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~------------------DGsI~IWDl~tgk~i~~~~----~h~g~It 188 (1072)
....+.++..+.-....+.+.|||+.|+++.. +..|.+.|..+|+++.+.. .|.-.|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 66778888888888899999999987877531 2357778889999887744 3667899
Q ss_pred EEEEcCCCcEEEEEECCCe-------EEEEECCCCcEEEee-------CCCCCCeEEEEEeCCCCEEEEEE--CCcEEEE
Q 001472 189 SIDFHPLEFLLATGSADRT-------VKFWDLETFELIGST-------RPEVTGVHAITFHPDGRTLFSGF--DDNLKVY 252 (1072)
Q Consensus 189 sLafSPdg~lLaTgS~DGt-------IrIWDl~tge~i~~~-------~~h~~~VtsIafSPDG~~LasGs--dg~I~Vw 252 (1072)
.|++.++|..++..-..|. |.+++... .+..+ ....+.+-+|+++.+|.++++++ .+.+.+|
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 9999999987776655442 44444332 22222 12346789999999999998765 4558999
Q ss_pred EecCCeeecccccCCCeeeeEEecCCCEEEEEE
Q 001472 253 SWEPVICHDSVDMGWSTLGDLCINDGKLLGCSF 285 (1072)
Q Consensus 253 d~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs 285 (1072)
|..++.+....... ..+......++ ++++++
T Consensus 245 d~~tg~~~~~~~l~-D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 245 DAATGRLLGSVPLP-DACGVAPTDDG-FLVSSG 275 (305)
T ss_pred ECCCCCEeeccccC-ceeeeeecCCc-eEEeCC
Confidence 99998877665543 23333333444 555543
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-06 Score=95.13 Aligned_cols=227 Identities=10% Similarity=-0.021 Sum_probs=153.5
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEe-eCCCCCeEEEEEc-CCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEE
Q 001472 29 RFLITGGDDQKVNLWAIGKPTALMSL-CGLSSPVDSVAFD-SAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAV 106 (1072)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~~~l~sl-~~hs~~ItsLafS-PdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsL 106 (1072)
.+||.||..|...+|...+.+....+ ..+...|.-+.=. -...-+..++.|.+++++++..+.....+...+-.+.++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 47999999999999999765544433 3333333322111 122346677888888888876544333322222337889
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCe-E-EE-EEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEE-----
Q 001472 107 EFHPFGEFFASGCMDTNLKIWDIRKKG-C-IH-TYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLH----- 178 (1072)
Q Consensus 107 afSPdg~~LaSgs~DGsI~IWDlrtgk-~-v~-~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~----- 178 (1072)
.++++++++++.+....|..|.+.... . +. ......+.-.+..|+.....+|++..||.+.|||++......
T Consensus 165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss 244 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS 244 (344)
T ss_pred EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc
Confidence 999999999999999999999886543 2 22 122234445788999998999999999999999998764332
Q ss_pred EeeecCCceEEEEEcCCC--cEEEEEECCCeEEEEECCCCcEEEeeCCCC--------CCeEEEEEeCCCCEEEEEECCc
Q 001472 179 DFKFHEGHIRSIDFHPLE--FLLATGSADRTVKFWDLETFELIGSTRPEV--------TGVHAITFHPDGRTLFSGFDDN 248 (1072)
Q Consensus 179 ~~~~h~g~ItsLafSPdg--~lLaTgS~DGtIrIWDl~tge~i~~~~~h~--------~~VtsIafSPDG~~LasGsdg~ 248 (1072)
+-..|.|.+..+.|++.| .+|+..-.-+.+.+.|++++.....+.... ..|....|+.++..+.+.....
T Consensus 245 trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~ 324 (344)
T KOG4532|consen 245 TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ 324 (344)
T ss_pred cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh
Confidence 223588999999999865 355555556789999999987654443221 2266777777777776666555
Q ss_pred EEEEEec
Q 001472 249 LKVYSWE 255 (1072)
Q Consensus 249 I~Vwd~~ 255 (1072)
+.=|.+.
T Consensus 325 ~ae~ni~ 331 (344)
T KOG4532|consen 325 GAEYNIL 331 (344)
T ss_pred hheeecc
Confidence 4455444
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.3e-05 Score=85.27 Aligned_cols=213 Identities=17% Similarity=0.148 Sum_probs=138.2
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEc-CCCCEEEEEecCCeEEEEECCCCceEEEeee
Q 001472 105 AVEFHP-FGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFT-PDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182 (1072)
Q Consensus 105 sLafSP-dg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafS-PDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~ 182 (1072)
++.|.+ ++.++++....+.|+.|+..++.... +.... ...+++. +++. |+.+... .+.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEcC-ceEEEecCCCcEEEEeec
Confidence 578998 66666666678999999998776433 33222 6777777 6655 5555544 456669998866544443
Q ss_pred -----cCCceEEEEEcCCCcEEEEEECC--------CeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEE--CC
Q 001472 183 -----HEGHIRSIDFHPLEFLLATGSAD--------RTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF--DD 247 (1072)
Q Consensus 183 -----h~g~ItsLafSPdg~lLaTgS~D--------GtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGs--dg 247 (1072)
.......+++.++|++.++.... |.|+.++.. ++.... .........|+|+|+++.|++.. .+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~-~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV-ADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE-EEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE-ecCcccccceEECCcchheeecccccc
Confidence 23457899999999977776543 568888887 543332 23345578999999999888764 34
Q ss_pred cEEEEEecCCee----ec---ccccCC-CeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEE
Q 001472 248 NLKVYSWEPVIC----HD---SVDMGW-STLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVK 319 (1072)
Q Consensus 248 ~I~Vwd~~s~~~----~~---~l~~~~-s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVa 319 (1072)
.|..|+++.... .. .+.... .+-...+..+|++.++....+.|.+++.+...+..+.+ + ...+++++
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~----p-~~~~t~~~ 231 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIEL----P-VPRPTNCA 231 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-----S-SSSEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcC----C-CCCEEEEE
Confidence 577777753221 11 112222 24455666899988888889999999998555555543 3 34899999
Q ss_pred E-CCCCCccce
Q 001472 320 F-NPPGSHSLE 329 (1072)
Q Consensus 320 F-SPDGs~lLa 329 (1072)
| -||.+.+.+
T Consensus 232 fgg~~~~~L~v 242 (246)
T PF08450_consen 232 FGGPDGKTLYV 242 (246)
T ss_dssp EESTTSSEEEE
T ss_pred EECCCCCEEEE
Confidence 9 577674433
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5e-07 Score=99.09 Aligned_cols=237 Identities=23% Similarity=0.363 Sum_probs=161.5
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe-----eEEEEeCCC------------CCeEEEEEcCCCC--EEEEE
Q 001472 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK-----MVRTLTGHK------------SNCTAVEFHPFGE--FFASG 118 (1072)
Q Consensus 58 s~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk-----~i~tl~~h~------------~~VtsLafSPdg~--~LaSg 118 (1072)
...|+++.|...|.||++|...|.|.+|.-.... ....+++|. ..|..+.|..++. .|+..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4568999999999999999999999999755332 222344442 3578888876553 56667
Q ss_pred eCCCeEEEEECCCCeE-------------------------------------E-----EEE-ecCCCCeEEEEEcCCCC
Q 001472 119 CMDTNLKIWDIRKKGC-------------------------------------I-----HTY-KGHTRGINTIRFTPDGR 155 (1072)
Q Consensus 119 s~DGsI~IWDlrtgk~-------------------------------------v-----~~l-~~h~~~VtsLafSPDG~ 155 (1072)
+.|.+|++|.+..... + +.+ ..|...+.++.|..|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 7899999998753310 0 001 23555678899998888
Q ss_pred EEEEEecCCeEEEEECCCCce---EEEeeecC-----CceEEEEEcCC-CcEEEEEECCCeEEEEECCCCcE------EE
Q 001472 156 WVVSGGFDNVVKVWDLTAGKL---LHDFKFHE-----GHIRSIDFHPL-EFLLATGSADRTVKFWDLETFEL------IG 220 (1072)
Q Consensus 156 ~LaTGS~DGsI~IWDl~tgk~---i~~~~~h~-----g~ItsLafSPd-g~lLaTgS~DGtIrIWDl~tge~------i~ 220 (1072)
.++++. |-.|.+|++.-... +..++.|. .-|++..|+|. .+.+...+..|.|++.|++.... +.
T Consensus 186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 777754 77899998864332 23333343 34788899995 45666677789999999984221 11
Q ss_pred e----------eCCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCC-eeecccccC----------------CCeeeeE
Q 001472 221 S----------TRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPV-ICHDSVDMG----------------WSTLGDL 273 (1072)
Q Consensus 221 ~----------~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~-~~~~~l~~~----------------~s~i~~l 273 (1072)
. +......|..+.|+++|+++++-.--.++|||.+.. .++.+++.+ +....+.
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeis 344 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEIS 344 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEE
Confidence 1 111223578899999999999998889999998753 233333221 2334555
Q ss_pred EecCCCEEEEEEcCCeEEEEEc
Q 001472 274 CINDGKLLGCSFYRNSVGIWVA 295 (1072)
Q Consensus 274 ~spDGk~LAsgs~DGsVrIWDl 295 (1072)
|+-|.+.+.+|++.+...||-.
T Consensus 345 fSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 345 FSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred ecCCcccccccccccceeeecc
Confidence 6678888888888888888743
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-08 Score=121.10 Aligned_cols=221 Identities=21% Similarity=0.334 Sum_probs=167.2
Q ss_pred ceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCC--eEE
Q 001472 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTG--VIK 83 (1072)
Q Consensus 6 k~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DG--sI~ 83 (1072)
...+.|..|...-+|++|+.+. +.|+.|+..|.|++|++.+|.......+|..+|+.+.=+.+|..+++.+.-. -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 3456788899999999999987 8999999999999999999999999999999999999999999887765533 467
Q ss_pred EEEcCC-CeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec----CCCCeEEEEEcCCCCEEE
Q 001472 84 LWDLEE-SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG----HTRGINTIRFTPDGRWVV 158 (1072)
Q Consensus 84 IWDl~t-gk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~----h~~~VtsLafSPDG~~La 158 (1072)
+|++.. +...+.+. ...++.|+....+-+.|+......+||+.++..+.++-. ....-++..|+|+..+++
T Consensus 1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 999864 34444443 356788987655556666667799999999877655321 122236789999988665
Q ss_pred EEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCC
Q 001472 159 SGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDG 238 (1072)
Q Consensus 159 TGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG 238 (1072)
.|| .+||++..+.++.|.-.... ..-.|+|+|..++.-+. |||+++++.+.....-. -..+.|...|
T Consensus 1247 ---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~VtFNstG 1313 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCAVTFNSTG 1313 (1516)
T ss_pred ---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ceEEEeccCc
Confidence 355 58999988877777643322 22359999999887664 99999998877654332 3567888888
Q ss_pred CEEEEE
Q 001472 239 RTLFSG 244 (1072)
Q Consensus 239 ~~LasG 244 (1072)
..+++.
T Consensus 1314 ~VmYa~ 1319 (1516)
T KOG1832|consen 1314 DVMYAM 1319 (1516)
T ss_pred cchhhh
Confidence 877764
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.5e-05 Score=94.15 Aligned_cols=268 Identities=12% Similarity=0.067 Sum_probs=159.5
Q ss_pred EEEEEECCCeEEEEECCCCceEEEeeCCCC------CeE--EEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCC
Q 001472 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSS------PVD--SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKS 101 (1072)
Q Consensus 30 lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~------~It--sLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~ 101 (1072)
.++.++.++.|.-+|..+++.+..+..... .+. .+.+. ++..++.++.+|.|.-+|.++|+.+..+.....
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~ 141 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQ 141 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCC
Confidence 567788889999999999988877653322 000 11111 226788888999999999999999887764332
Q ss_pred C-----e-EEEEEcCCCCEEEEEe---------CCCeEEEEECCCCeEEEEEecCCCC--------------------e-
Q 001472 102 N-----C-TAVEFHPFGEFFASGC---------MDTNLKIWDIRKKGCIHTYKGHTRG--------------------I- 145 (1072)
Q Consensus 102 ~-----V-tsLafSPdg~~LaSgs---------~DGsI~IWDlrtgk~v~~l~~h~~~--------------------V- 145 (1072)
. + ....+. +..+++++ .+|.|+.+|..+|+.+..+...... +
T Consensus 142 ~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 142 VPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred cCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 1 1 112222 34455553 3688999999999988877542110 1
Q ss_pred EEEEEcCCCCEEEEEecCC------------------eEEEEECCCCceEEEeeecCCceE------EEEEc----CCCc
Q 001472 146 NTIRFTPDGRWVVSGGFDN------------------VVKVWDLTAGKLLHDFKFHEGHIR------SIDFH----PLEF 197 (1072)
Q Consensus 146 tsLafSPDG~~LaTGS~DG------------------sI~IWDl~tgk~i~~~~~h~g~It------sLafS----Pdg~ 197 (1072)
...++.+.+..++.++.++ .|.-+|..+|+.+..++....... ...+. -++.
T Consensus 220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~ 299 (488)
T cd00216 220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK 299 (488)
T ss_pred CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence 1234444556777777555 799999999999988763211111 01111 1232
Q ss_pred ---EEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEE------------------ECCcEEEEEecC
Q 001472 198 ---LLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG------------------FDDNLKVYSWEP 256 (1072)
Q Consensus 198 ---lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasG------------------sdg~I~Vwd~~s 256 (1072)
.+++++.+|.++.+|..+|+.+....... ..++.+| +..++.+ .++.+.-+|..+
T Consensus 300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t 375 (488)
T cd00216 300 PVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT 375 (488)
T ss_pred eeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence 67788889999999999999887654211 1122222 1111100 122344444444
Q ss_pred CeeecccccC---------CCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeee
Q 001472 257 VICHDSVDMG---------WSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYG 304 (1072)
Q Consensus 257 ~~~~~~l~~~---------~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~ 304 (1072)
++..-..... ...........+.+|++++.||.|+.+|.++++..+..
T Consensus 376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 376 GKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred CcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEE
Confidence 3332222221 11111111235677888889999999999888776654
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.56 E-value=7e-07 Score=96.32 Aligned_cols=204 Identities=19% Similarity=0.269 Sum_probs=127.7
Q ss_pred EEecCCC-CeEEEEEecCCCcEEEEEECCCeEEEEECCCCce------------EEEeeCCCCCeEEEEEcCCCCEEEEE
Q 001472 10 EFVAHSA-NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTA------------LMSLCGLSSPVDSVAFDSAEVLVLAG 76 (1072)
Q Consensus 10 ~L~gHsg-~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~------------l~sl~~hs~~ItsLafSPdG~~LatG 76 (1072)
+.-+|.+ .|..+.++-+ ..|+++..++.+..+....+.. .+.+..|..+-.+-+.+--++.++++
T Consensus 30 ~i~~~~d~~~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~ 107 (319)
T KOG4714|consen 30 EIMQHADVKLSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIG 107 (319)
T ss_pred hcccccceEEEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEec
Confidence 3344444 2555666655 4788888877766665433222 23333333333333333456779999
Q ss_pred EcCCeEEEEEcCCCee-EEEEeCCCCCeEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCeEEEEEecCCCCeEEEEE
Q 001472 77 ASTGVIKLWDLEESKM-VRTLTGHKSNCTAVEFHPFGEFFASGC-----MDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150 (1072)
Q Consensus 77 S~DGsI~IWDl~tgk~-i~tl~~h~~~VtsLafSPdg~~LaSgs-----~DGsI~IWDlrtgk~v~~l~~h~~~VtsLaf 150 (1072)
+.||.+.+++.+.-.. ...+......-.+.++...++++.++. .-+..++|+++..+.+..-+.....|.+++-
T Consensus 108 ~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~ 187 (319)
T KOG4714|consen 108 YADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCS 187 (319)
T ss_pred CCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhC
Confidence 9999999999765111 111111111112233334455555432 1245777877655443332223345899999
Q ss_pred cCC-CCEEEEEecCCeEEEEECCCCce-EEEeeecCCceEEEEEcC-CCcEEEEEECCCeEEEEECCC
Q 001472 151 TPD-GRWVVSGGFDNVVKVWDLTAGKL-LHDFKFHEGHIRSIDFHP-LEFLLATGSADRTVKFWDLET 215 (1072)
Q Consensus 151 SPD-G~~LaTGS~DGsI~IWDl~tgk~-i~~~~~h~g~ItsLafSP-dg~lLaTgS~DGtIrIWDl~t 215 (1072)
+|. ...+++|+.||.+.+||.+.... ...++.|..++..+.|+| ++..|++++.||.+..||..+
T Consensus 188 hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 188 HPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 984 45678888999999999998743 345678999999999999 578899999999999999775
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.2e-05 Score=88.22 Aligned_cols=277 Identities=14% Similarity=0.113 Sum_probs=150.9
Q ss_pred CCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCC-----------------
Q 001472 37 DQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGH----------------- 99 (1072)
Q Consensus 37 DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h----------------- 99 (1072)
.+.+.|||+.+++... +......+....|||+|+.++... ++.|++++..++...+.....
T Consensus 22 ~~~y~i~d~~~~~~~~-l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITP-LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEE-SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEE-CcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 4678999998865443 332256788999999999999885 688999998877554332211
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC-CeEEEEECCCCeEEEEEecCCC---CeEEEEEcCCCCEEEEEecCCeEEEEECCCCc
Q 001472 100 KSNCTAVEFHPFGEFFASGCMD-TNLKIWDIRKKGCIHTYKGHTR---GINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK 175 (1072)
Q Consensus 100 ~~~VtsLafSPdg~~LaSgs~D-GsI~IWDlrtgk~v~~l~~h~~---~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk 175 (1072)
-+.-..+.|+|||++|+....| ..|..+.+ ..+..... .+..+.+-.-|.-... -.+.++|+.+++
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~------~~~~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~ 169 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPL------PDYSPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLASGK 169 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE------EEESSSTESS-EEEEEE--BTTS---E----EEEEEEESSSTC
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEe------eccCCccccCCcccccccCCCCCcCCc----eEEEEEECCCCc
Confidence 1123568899999998887543 33333321 11111111 2344444323322211 147788998887
Q ss_pred eEE-Eee----ecCCceEEEEEcCCCcEEEEEECC-----CeEEEEECCCCcEEEeeC-CCCCC---eEEEEEe-CCCCE
Q 001472 176 LLH-DFK----FHEGHIRSIDFHPLEFLLATGSAD-----RTVKFWDLETFELIGSTR-PEVTG---VHAITFH-PDGRT 240 (1072)
Q Consensus 176 ~i~-~~~----~h~g~ItsLafSPdg~lLaTgS~D-----GtIrIWDl~tge~i~~~~-~h~~~---VtsIafS-PDG~~ 240 (1072)
... ... .....+..+.|.+++..|+..-.+ ..+.++|..++....... ...+. ...+.|. +++..
T Consensus 170 ~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~ 249 (353)
T PF00930_consen 170 TTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNE 249 (353)
T ss_dssp CCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSE
T ss_pred EEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCE
Confidence 532 111 234568899999999844443322 247788887765432221 11122 2355665 66665
Q ss_pred EEE-EEC-C--cEEEEEecCCeeecccccCCCeeeeEEe-cCCCEE-EEEEc--CCeEEEEEcCCC-ceeeeecCCCCCC
Q 001472 241 LFS-GFD-D--NLKVYSWEPVICHDSVDMGWSTLGDLCI-NDGKLL-GCSFY--RNSVGIWVADVS-HVEPYGVGAPEPD 311 (1072)
Q Consensus 241 Las-Gsd-g--~I~Vwd~~s~~~~~~l~~~~s~i~~l~s-pDGk~L-Asgs~--DGsVrIWDlds~-~l~~~~v~~~~~~ 311 (1072)
++. ... | .|.+++.............|.+...+.+ .+++.| +++.. .+.-+||.++.. ......+. ..
T Consensus 250 ~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT---~~ 326 (353)
T PF00930_consen 250 FLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLT---CE 326 (353)
T ss_dssp EEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESS---TT
T ss_pred EEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEecc---CC
Confidence 554 332 3 2677777777666666677777554443 565544 44443 246677766544 33333322 11
Q ss_pred CCCeeEEEECCCCCccc
Q 001472 312 QSICTEVKFNPPGSHSL 328 (1072)
Q Consensus 312 ~~~ItsVaFSPDGs~lL 328 (1072)
......+.|||||+.++
T Consensus 327 ~~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 327 DGDHYSASFSPDGKYYV 343 (353)
T ss_dssp SSTTEEEEE-TTSSEEE
T ss_pred CCCceEEEECCCCCEEE
Confidence 22226899999999533
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=9e-07 Score=105.44 Aligned_cols=282 Identities=18% Similarity=0.234 Sum_probs=180.8
Q ss_pred CCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCC--CCeEEEEEcCCC--CEEEEEEcCCeEEEEEcCC-
Q 001472 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLS--SPVDSVAFDSAE--VLVLAGASTGVIKLWDLEE- 89 (1072)
Q Consensus 15 sg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs--~~ItsLafSPdG--~~LatGS~DGsI~IWDl~t- 89 (1072)
.+++.++.++|.| +-++.++.-| +.+.|+...-....+..|. -.|....|++.. .+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~g-rdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSG-RDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeecccc-chhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 3678889999998 5567777665 5566665443222222232 346678888743 4555555666777898853
Q ss_pred --CeeEEEEeCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEecCCe
Q 001472 90 --SKMVRTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKKG-CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNV 165 (1072)
Q Consensus 90 --gk~i~tl~~h~~~VtsLafSPdg~-~LaSgs~DGsI~IWDlrtgk-~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGs 165 (1072)
...-..+.+|...|+.+.|+|+.. .+++++.|..+..||+++-. .+..+.........++|+-....+++.+....
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 334456678999999999999764 78999999999999998753 44444444456778899874444555667788
Q ss_pred EEEEECCCC-ceEEEeeecCCceEEEEEcCC-CcEEEEEECCCeEEEEECCCCcE-EEeeCCCCCCeEEEEEeCCCCEEE
Q 001472 166 VKVWDLTAG-KLLHDFKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFEL-IGSTRPEVTGVHAITFHPDGRTLF 242 (1072)
Q Consensus 166 I~IWDl~tg-k~i~~~~~h~g~ItsLafSPd-g~lLaTgS~DGtIrIWDl~tge~-i~~~~~h~~~VtsIafSPDG~~La 242 (1072)
|.+||++.| .++..+++|-..|..+.|+.- ...+.+++.||+|++||..+... .........+|..-.+.|-|.-.+
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence 999999876 567788888888888888763 35677888999999999876432 222233345666667777554333
Q ss_pred E--E-ECCcEEEEEecC----------CeeecccccCCCeeeeEEe---------cC--CCEEEEEEcCCeEEEEEcCCC
Q 001472 243 S--G-FDDNLKVYSWEP----------VICHDSVDMGWSTLGDLCI---------ND--GKLLGCSFYRNSVGIWVADVS 298 (1072)
Q Consensus 243 s--G-sdg~I~Vwd~~s----------~~~~~~l~~~~s~i~~l~s---------pD--Gk~LAsgs~DGsVrIWDlds~ 298 (1072)
. . +++.+.+++.+. ...+..+..+...+--+.+ .| .-.|++-+.|..+++|-++..
T Consensus 262 ~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 262 IMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred eccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 3 1 122233333222 1122222222222111111 11 125889999999999988644
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.6e-06 Score=102.99 Aligned_cols=181 Identities=24% Similarity=0.303 Sum_probs=137.8
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE
Q 001472 59 SPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY 138 (1072)
Q Consensus 59 ~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l 138 (1072)
..+.|++++ +++|+.|+.+|.|++++.... . .....|... ..+|.++++|+.||.|.|..+-+.+...++
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 456677775 789999999999999997643 2 333334433 567999999999999999999888877777
Q ss_pred ecCCCCeEEEEEcCC-----CCEEEEEecCCeEEEEECCCC--ceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEE
Q 001472 139 KGHTRGINTIRFTPD-----GRWVVSGGFDNVVKVWDLTAG--KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFW 211 (1072)
Q Consensus 139 ~~h~~~VtsLafSPD-----G~~LaTGS~DGsI~IWDl~tg--k~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIW 211 (1072)
. ...++.+++++|+ .+.+++||.-| +.++.-+-. +....+....|+|.+++|. |+++|.++.+| |++|
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vy 184 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVY 184 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEE
Confidence 6 4568999999997 56799999888 777753211 1112355567899999996 88999888776 8999
Q ss_pred ECCCCcEEEeeCCCCCC------eEEEEEeCCCCEEEEEECCcEEEEEec
Q 001472 212 DLETFELIGSTRPEVTG------VHAITFHPDGRTLFSGFDDNLKVYSWE 255 (1072)
Q Consensus 212 Dl~tge~i~~~~~h~~~------VtsIafSPDG~~LasGsdg~I~Vwd~~ 255 (1072)
|+.+.+.+..+...... ...+.|.++ ..|+.|..++|+|..++
T Consensus 185 d~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 185 DTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGDSVKICSIK 233 (846)
T ss_pred eccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCCeEEEEEEe
Confidence 99998888776655443 346777765 56788999999999987
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-06 Score=94.30 Aligned_cols=236 Identities=19% Similarity=0.333 Sum_probs=158.5
Q ss_pred CCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCc-----eEEEeeCCC------------CCeEEEEEcCCC--CEEEE
Q 001472 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT-----ALMSLCGLS------------SPVDSVAFDSAE--VLVLA 75 (1072)
Q Consensus 15 sg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~-----~l~sl~~hs------------~~ItsLafSPdG--~~Lat 75 (1072)
...|+++.|...| .||++|...|.|.+|.-.... ....+++|. ..|..+.|..++ ..++.
T Consensus 26 ad~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDETG-LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEecccc-ceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 4578999999988 899999999999999764432 122344443 347788887644 46777
Q ss_pred EEcCCeEEEEEcCCCe-------------------e------------------E-----EEE-eCCCCCeEEEEEcCCC
Q 001472 76 GASTGVIKLWDLEESK-------------------M------------------V-----RTL-TGHKSNCTAVEFHPFG 112 (1072)
Q Consensus 76 GS~DGsI~IWDl~tgk-------------------~------------------i-----~tl-~~h~~~VtsLafSPdg 112 (1072)
.+.|.+|++|.+.... . + +.+ ..|...|.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7889999999875320 0 0 111 3466678899999888
Q ss_pred CEEEEEeCCCeEEEEECCCCe---EEEEEecCC-----CCeEEEEEcCC-CCEEEEEecCCeEEEEECCCCce------E
Q 001472 113 EFFASGCMDTNLKIWDIRKKG---CIHTYKGHT-----RGINTIRFTPD-GRWVVSGGFDNVVKVWDLTAGKL------L 177 (1072)
Q Consensus 113 ~~LaSgs~DGsI~IWDlrtgk---~v~~l~~h~-----~~VtsLafSPD-G~~LaTGS~DGsI~IWDl~tgk~------i 177 (1072)
..++++ .|-.|.+|++.--. .+..++.|. .-|++..|+|. ...+...+..|.|++-|++...+ +
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 888876 57789999876322 122333332 24788899994 44666777899999999985321 1
Q ss_pred EE----------eeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCC-cEEEeeCCCCC------------C---eEE
Q 001472 178 HD----------FKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF-ELIGSTRPEVT------------G---VHA 231 (1072)
Q Consensus 178 ~~----------~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tg-e~i~~~~~h~~------------~---Vts 231 (1072)
.. +..--..|..+.|+++|+++++-.. -+|+|||.+.. .++.++..|.. . -..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 11 1112345788999999999987765 58999999864 34555433321 1 235
Q ss_pred EEEeCCCCEEEEEEC-CcEEEEE
Q 001472 232 ITFHPDGRTLFSGFD-DNLKVYS 253 (1072)
Q Consensus 232 IafSPDG~~LasGsd-g~I~Vwd 253 (1072)
+.|+.|.+.+.+|+. +..-+|-
T Consensus 343 isfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 343 ISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEecCCcccccccccccceeeec
Confidence 778888888888753 3344444
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-05 Score=86.89 Aligned_cols=221 Identities=13% Similarity=0.087 Sum_probs=140.9
Q ss_pred CCCeEEEEECCCCc-eEEEeeCCCCCeEEEEEcC-----CCCEEEEEEcCCeEEEEEcCCCeeE-EEEeCCCCCeEEEEE
Q 001472 36 DDQKVNLWAIGKPT-ALMSLCGLSSPVDSVAFDS-----AEVLVLAGASTGVIKLWDLEESKMV-RTLTGHKSNCTAVEF 108 (1072)
Q Consensus 36 ~DGtV~IWDl~t~~-~l~sl~~hs~~ItsLafSP-----dG~~LatGS~DGsI~IWDl~tgk~i-~tl~~h~~~VtsLaf 108 (1072)
....|.+|++-... .+..+. ..+.|.| ...+|+.|+..|.+.+|...+.+.. .....+...|.-+.=
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred ceeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 34567788774332 222221 2345544 5568999999999999999866533 333334433322211
Q ss_pred cCC-CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCc--eEE-EeeecC
Q 001472 109 HPF-GEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK--LLH-DFKFHE 184 (1072)
Q Consensus 109 SPd-g~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk--~i~-~~~~h~ 184 (1072)
.-+ .--+..++.|.++++.++.-+..-..+....-.+.++.+++|++++++.+....|..|.+.... .+. ......
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 111 2235566778888888775443322222222347899999999999999999999999886432 222 112223
Q ss_pred CceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEE-----EeeCCCCCCeEEEEEeCCCC--EEE-EEECCcEEEEEecC
Q 001472 185 GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELI-----GSTRPEVTGVHAITFHPDGR--TLF-SGFDDNLKVYSWEP 256 (1072)
Q Consensus 185 g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i-----~~~~~h~~~VtsIafSPDG~--~La-sGsdg~I~Vwd~~s 256 (1072)
..-.+..|+.....+|++..||++.|||++..... ..-..|.+.++.+.|++.|. +|+ +-.-+.+.+.|.+.
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 34467889999999999999999999999874332 22345778899999998663 233 33445688888887
Q ss_pred Ceeecc
Q 001472 257 VICHDS 262 (1072)
Q Consensus 257 ~~~~~~ 262 (1072)
..-+..
T Consensus 284 ~~~~q~ 289 (344)
T KOG4532|consen 284 YVNHQV 289 (344)
T ss_pred CceeeE
Confidence 665443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.1e-06 Score=103.24 Aligned_cols=180 Identities=22% Similarity=0.345 Sum_probs=140.1
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEE
Q 001472 69 AEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTI 148 (1072)
Q Consensus 69 dG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsL 148 (1072)
++..++.|+....+..+|+.+.+..+...-....|.-++. +++++.+|...|+|.+-|.++.+.++++..|.+.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 3456777777778889999988887776655555665655 48999999999999999999999999999999988776
Q ss_pred EEcCCCCEEEEEec---------CCeEEEEECCCCceEEEeeecCCceEEEEEcCC-CcEEEEEECCCeEEEEECC---C
Q 001472 149 RFTPDGRWVVSGGF---------DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLE---T 215 (1072)
Q Consensus 149 afSPDG~~LaTGS~---------DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPd-g~lLaTgS~DGtIrIWDl~---t 215 (1072)
.. .|+.|+++|. |..|+|||++..+.+.-+..+.++ .-+.|+|. ...+++++..|...+.|.. +
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 66 4888998875 456899999988877666655554 45678885 4678888889999999943 2
Q ss_pred C-cEEEeeCCCCCCeEEEEEeCCCCEEEEE-ECCcEEEEE
Q 001472 216 F-ELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYS 253 (1072)
Q Consensus 216 g-e~i~~~~~h~~~VtsIafSPDG~~LasG-sdg~I~Vwd 253 (1072)
- .-+..+......+..++++++|..|+.| .+|.|.+|.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2 1233444555669999999999999998 567799997
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.2e-06 Score=94.14 Aligned_cols=250 Identities=18% Similarity=0.254 Sum_probs=173.5
Q ss_pred ceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcC-CCeeEEEEe-CCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 001472 49 TALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE-ESKMVRTLT-GHKSNCTAVEFHPFGEFFASGCMDTNLKI 126 (1072)
Q Consensus 49 ~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~-tgk~i~tl~-~h~~~VtsLafSPdg~~LaSgs~DGsI~I 126 (1072)
..+..+.+|...++....-|...-+++.+.|.+++||--. .++.-..+. ....+++++.+.+....|++|-..|.+.-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 3455677888888888888888889999999999999543 344332222 23567899999999999999999999998
Q ss_pred EECC----CCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEE
Q 001472 127 WDIR----KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATG 202 (1072)
Q Consensus 127 WDlr----tgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTg 202 (1072)
+.+. .....+.+..|...+..+.|+-...++++.+.|..+.-.-.+.+..+..+.. ....+++.+.-. +.+.|
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvG 171 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVG 171 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEec
Confidence 8653 4455667778999999999999889999999998876655555554332221 111111222111 55566
Q ss_pred ECCCeEEEEEC--CCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEE-CCcEEEEEecCCeeecc--cccCCCeeeeEEecC
Q 001472 203 SADRTVKFWDL--ETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDS--VDMGWSTLGDLCIND 277 (1072)
Q Consensus 203 S~DGtIrIWDl--~tge~i~~~~~h~~~VtsIafSPDG~~LasGs-dg~I~Vwd~~s~~~~~~--l~~~~s~i~~l~spD 277 (1072)
...|.|.+..+ ..-..+..+.+|.+.+.+++|.+..+.|++|. +..+.+||+........ ......+.......-
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~ 251 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQH 251 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhh
Confidence 66666655544 34567888999999999999999999999975 55699999865443221 111111222222244
Q ss_pred CCEEEEEEcCCeEEEEEcCCCcee
Q 001472 278 GKLLGCSFYRNSVGIWVADVSHVE 301 (1072)
Q Consensus 278 Gk~LAsgs~DGsVrIWDlds~~l~ 301 (1072)
-+.+++++.||.|.+|+.+....+
T Consensus 252 t~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 252 TRQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred heeeeeccCCCeEEEEeccceeec
Confidence 567888889999999998766544
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.5e-06 Score=96.64 Aligned_cols=160 Identities=19% Similarity=0.351 Sum_probs=114.1
Q ss_pred eEEEEEecCCCcEEEEEECCCeEEEEECCCCc----eEEEeeCCCCCeEEEEEcCCCCEEEEEEcCC---eEEEEEcCCC
Q 001472 18 VNCISIGKKACRFLITGGDDQKVNLWAIGKPT----ALMSLCGLSSPVDSVAFDSAEVLVLAGASTG---VIKLWDLEES 90 (1072)
Q Consensus 18 Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~----~l~sl~~hs~~ItsLafSPdG~~LatGS~DG---sI~IWDl~tg 90 (1072)
+..+..++++ .+||++..+....++++.... .+.... ......++.|..+.....++...| .+.+|....+
T Consensus 65 ~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 65 PALVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred ccccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 3344566666 888888888877677663322 222222 233345566666565555554444 4555655544
Q ss_pred eeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEecCCeEEEE
Q 001472 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK-GHTRGINTIRFTPDGRWVVSGGFDNVVKVW 169 (1072)
Q Consensus 91 k~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~-~h~~~VtsLafSPDG~~LaTGS~DGsI~IW 169 (1072)
.. ..+-+|-..++.++|+||+++|+++..|..|++-.+..--.+..|. +|...|..++..++ ..|++||.|++|++|
T Consensus 143 ~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 143 RC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLW 220 (390)
T ss_pred Cc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEE
Confidence 43 3445799999999999999999999999999998877655555554 69999999999865 568999999999999
Q ss_pred ECCCCceEEEee
Q 001472 170 DLTAGKLLHDFK 181 (1072)
Q Consensus 170 Dl~tgk~i~~~~ 181 (1072)
|+.+|+.+..+.
T Consensus 221 d~~sgk~L~t~d 232 (390)
T KOG3914|consen 221 DITSGKLLDTCD 232 (390)
T ss_pred ecccCCcccccc
Confidence 999999886665
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-07 Score=114.26 Aligned_cols=219 Identities=17% Similarity=0.237 Sum_probs=161.6
Q ss_pred ceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCC--eEEE
Q 001472 49 TALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT--NLKI 126 (1072)
Q Consensus 49 ~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DG--sI~I 126 (1072)
+....+..|....+|++|+-+.++|++|+..|.|++|++.+|.......+|+..|+.+.-+.+|..+++.+.-. -..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 44556778889999999999999999999999999999999999999999999999999999999777654432 4778
Q ss_pred EECCC-CeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEee----ecCCceEEEEEcCCCcEEEE
Q 001472 127 WDIRK-KGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK----FHEGHIRSIDFHPLEFLLAT 201 (1072)
Q Consensus 127 WDlrt-gk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~----~h~g~ItsLafSPdg~lLaT 201 (1072)
|++.. +...+.|. .-.++.|+.....-+.|.......+||++++..+.++- +....-.+..|+|+..+++
T Consensus 1172 W~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred hccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 99764 44455554 34678898765555667766788999999998766532 1222336788999988876
Q ss_pred EECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCCeeecccccCCCeeeeEEecCCCEE
Q 001472 202 GSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLL 281 (1072)
Q Consensus 202 gS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~L 281 (1072)
.|| .+||.+..+.+..|.... ....-.|+|.|.-++.-+ .|||+++....+.++.- ......|-+.|..+
T Consensus 1247 --ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS----EIwD~RTF~lLh~VP~L-dqc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS----EIWDMRTFKLLHSVPSL-DQCAVTFNSTGDVM 1316 (1516)
T ss_pred --eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeec----hhhhhHHHHHHhcCccc-cceEEEeccCccch
Confidence 355 589999887777765543 223446999999888865 49999988776655432 22333444555544
Q ss_pred E
Q 001472 282 G 282 (1072)
Q Consensus 282 A 282 (1072)
.
T Consensus 1317 Y 1317 (1516)
T KOG1832|consen 1317 Y 1317 (1516)
T ss_pred h
Confidence 3
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-06 Score=97.54 Aligned_cols=160 Identities=19% Similarity=0.300 Sum_probs=116.6
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEEcCCCee----EEEEeCCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCe
Q 001472 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKM----VRTLTGHKSNCTAVEFHPFGEFFASGCMDT---NLKIWDIRKKG 133 (1072)
Q Consensus 61 ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~----i~tl~~h~~~VtsLafSPdg~~LaSgs~DG---sI~IWDlrtgk 133 (1072)
+..+.+++.+++||++..+....++++..... +... .....-+++.|..+.....++...| .+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 44566788999999998888877887764432 2222 2233345566666666555554444 45555554444
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEee-ecCCceEEEEEcCCCcEEEEEECCCeEEEEE
Q 001472 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK-FHEGHIRSIDFHPLEFLLATGSADRTVKFWD 212 (1072)
Q Consensus 134 ~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~-~h~g~ItsLafSPdg~lLaTgS~DGtIrIWD 212 (1072)
+ ..+-+|-..+..++|+||+++|+++..|..|++-.....-.+..|- +|...|..++.-++ ..|++|+.|++|++||
T Consensus 144 ~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 144 C-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD 221 (390)
T ss_pred c-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence 3 3445688899999999999999999999999998877666666655 58899999999865 4589999999999999
Q ss_pred CCCCcEEEeeC
Q 001472 213 LETFELIGSTR 223 (1072)
Q Consensus 213 l~tge~i~~~~ 223 (1072)
+.+|+.+..+.
T Consensus 222 ~~sgk~L~t~d 232 (390)
T KOG3914|consen 222 ITSGKLLDTCD 232 (390)
T ss_pred cccCCcccccc
Confidence 99999875543
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.8e-07 Score=105.92 Aligned_cols=206 Identities=23% Similarity=0.317 Sum_probs=148.9
Q ss_pred EEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCc-eEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001472 10 EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT-ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88 (1072)
Q Consensus 10 ~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~-~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~ 88 (1072)
.+.||+..|+.+.|+|....++++++.|-.+..||+.... .+..+..-......++|+-....+++.+....|.+||.+
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r 188 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR 188 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence 4689999999999999999999999999999999997654 344444455666789999755556666777889999998
Q ss_pred CC-eeEEEEeCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeEEEEE-ecCCCCeEEEEEcCCCCEEEE--EecC
Q 001472 89 ES-KMVRTLTGHKSNCTAVEFHPF-GEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTIRFTPDGRWVVS--GGFD 163 (1072)
Q Consensus 89 tg-k~i~tl~~h~~~VtsLafSPd-g~~LaSgs~DGsI~IWDlrtgk~v~~l-~~h~~~VtsLafSPDG~~LaT--GS~D 163 (1072)
.| .++..+++|...|..++|+.. ...+.+++.||+|++||.......... .....+|+.-+|.|-|.-.++ --.+
T Consensus 189 ~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~ 268 (1081)
T KOG0309|consen 189 KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGG 268 (1081)
T ss_pred CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCC
Confidence 65 577888999999999999763 336788889999999998754432221 124456777777774432221 1111
Q ss_pred CeEEEEE---------CCC-CceEEEeeecCCceEEEEEcCC----------CcEEEEEECCCeEEEEECCC
Q 001472 164 NVVKVWD---------LTA-GKLLHDFKFHEGHIRSIDFHPL----------EFLLATGSADRTVKFWDLET 215 (1072)
Q Consensus 164 GsI~IWD---------l~t-gk~i~~~~~h~g~ItsLafSPd----------g~lLaTgS~DGtIrIWDl~t 215 (1072)
..+.+++ ..+ .+.++.|.+|...|..+.|-.. ...|++-+.|.++++|-+.+
T Consensus 269 n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 269 NMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 2333333 322 3578899999988877766432 24799999999999998764
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00015 Score=78.83 Aligned_cols=266 Identities=11% Similarity=0.038 Sum_probs=156.9
Q ss_pred EEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCC
Q 001472 21 ISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHK 100 (1072)
Q Consensus 21 IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~ 100 (1072)
+...++.+.+++.|+..+.+.--|..+|..+.... ....|.+-+.- -|++++.|++.|.+++.+..+|..++.+....
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~ 93 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE 93 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence 34556667899999999999999999988776542 12223322221 47789999999999999999998877766433
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCC--ceEE
Q 001472 101 SNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAG--KLLH 178 (1072)
Q Consensus 101 ~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tg--k~i~ 178 (1072)
.--......+++..++.|+.|++.+..|.++..++...+...+...+-+..+-...|..+...|.+.--....+ ..+.
T Consensus 94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w 173 (354)
T KOG4649|consen 94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFW 173 (354)
T ss_pred hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceeh
Confidence 32233455678999999999999999999999999888766655556667773334555555666665555544 2222
Q ss_pred EeeecCCceEE--EEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCe-----------EEEEEeCCCCEEEEEE
Q 001472 179 DFKFHEGHIRS--IDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGV-----------HAITFHPDGRTLFSGF 245 (1072)
Q Consensus 179 ~~~~h~g~Its--LafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~V-----------tsIafSPDG~~LasGs 245 (1072)
.+. ..++|.+ ++. +..+..+.-||.+.-+| ..|+.+..+... ++| ..+.+...+-+.+..-
T Consensus 174 ~~~-~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~-GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p 247 (354)
T KOG4649|consen 174 AAT-RFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPATK-GPIFMEPCESRPSCQQISLENENCFCAPLP 247 (354)
T ss_pred hhh-cCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeecCC-CceecccccCCCcceEEEEecCCeEEEecc
Confidence 221 1233321 121 33445555666666665 444544433221 111 2333333333333322
Q ss_pred CCcEEEEEecCCeeecccccC---CCeeeeEEecCCCEEEEEEcCCeEEEEEc
Q 001472 246 DDNLKVYSWEPVICHDSVDMG---WSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1072)
Q Consensus 246 dg~I~Vwd~~s~~~~~~l~~~---~s~i~~l~spDGk~LAsgs~DGsVrIWDl 295 (1072)
..+-.+|..+.+.....+-.. +..... -....++|..++.||.+.|...
T Consensus 248 ~~ghL~w~~~~g~t~~vy~~p~l~F~~h~~-~~S~~~ll~~~s~dgkv~il~~ 299 (354)
T KOG4649|consen 248 IAGHLLWATQSGTTLHVYLSPKLRFDLHSP-GISYPKLLRRSSGDGKVMILMT 299 (354)
T ss_pred ccceEEEEecCCcEEEEEeCcccceeccCC-CCcchhhhhhhcCCCcEEEEEe
Confidence 223456766665433222111 000000 0123567888888998888743
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00012 Score=88.86 Aligned_cols=261 Identities=11% Similarity=0.120 Sum_probs=162.4
Q ss_pred EEEEEECCCeEEEEECCCCceEEEeeCCCC-------------Ce---------------E--EEEEc---CCCCEEEEE
Q 001472 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSS-------------PV---------------D--SVAFD---SAEVLVLAG 76 (1072)
Q Consensus 30 lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~-------------~I---------------t--sLafS---PdG~~LatG 76 (1072)
.+.+|+..|.|+|+-+.+.+.+..+..+.- .| . .+++. -||+||+.-
T Consensus 68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~fin 147 (635)
T PRK02888 68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIN 147 (635)
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEe
Confidence 467889999999999988877666532110 00 0 11121 256777775
Q ss_pred Ec-CCeEEEEEcCCCeeEEEEeC-CCCCeEEEE-------------------EcCCCCEEEEE-eCCCeEEEEECCCCeE
Q 001472 77 AS-TGVIKLWDLEESKMVRTLTG-HKSNCTAVE-------------------FHPFGEFFASG-CMDTNLKIWDIRKKGC 134 (1072)
Q Consensus 77 S~-DGsI~IWDl~tgk~i~tl~~-h~~~VtsLa-------------------fSPdg~~LaSg-s~DGsI~IWDlrtgk~ 134 (1072)
.. ++.|...++...++-+.+.- ....+..++ +.|||+.+... -..+.+.++|..+.+.
T Consensus 148 dk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV 227 (635)
T PRK02888 148 DKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEV 227 (635)
T ss_pred cCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceE
Confidence 53 45666666665544332221 112222222 33455544322 2245677788887777
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEecC----CeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEE
Q 001472 135 IHTYKGHTRGINTIRFTPDGRWVVSGGFD----NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF 210 (1072)
Q Consensus 135 v~~l~~h~~~VtsLafSPDG~~LaTGS~D----GsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrI 210 (1072)
..++.-.. ....+.++++|+++++.+.+ ..+...+......+..|.... + -.+.++|++...+ ++.|.+
T Consensus 228 ~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~vkdGK~~~V~--gn~V~V 300 (635)
T PRK02888 228 AWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAVKAGKFKTIG--GSKVPV 300 (635)
T ss_pred EEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhhhCCCEEEEC--CCEEEE
Confidence 77665333 45778999999999887632 233334333222222222110 0 1334578776663 578999
Q ss_pred EECCC----CcEEEeeCCCCCCeEEEEEeCCCCEEEEEE--CCcEEEEEecCCe------------eecccccCCCeeee
Q 001472 211 WDLET----FELIGSTRPEVTGVHAITFHPDGRTLFSGF--DDNLKVYSWEPVI------------CHDSVDMGWSTLGD 272 (1072)
Q Consensus 211 WDl~t----ge~i~~~~~h~~~VtsIafSPDG~~LasGs--dg~I~Vwd~~s~~------------~~~~l~~~~s~i~~ 272 (1072)
+|..+ +..+.....-......+.++|||+++++++ ++.+.|+|+.... .......+..++..
T Consensus 301 ID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHT 380 (635)
T PRK02888 301 VDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHT 380 (635)
T ss_pred EECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceE
Confidence 99998 333333333445678999999999999864 6679999998755 24556677888888
Q ss_pred EEecCCCEEEEEEcCCeEEEEEcCC
Q 001472 273 LCINDGKLLGCSFYRNSVGIWVADV 297 (1072)
Q Consensus 273 l~spDGk~LAsgs~DGsVrIWDlds 297 (1072)
.|..+|....+-.-|..|..|+++.
T Consensus 381 aFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 381 AFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EECCCCCEEEeEeecceeEEEehHH
Confidence 8888998888888999999999864
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-05 Score=97.73 Aligned_cols=181 Identities=17% Similarity=0.206 Sum_probs=133.0
Q ss_pred CCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEE
Q 001472 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRT 95 (1072)
Q Consensus 16 g~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~t 95 (1072)
+.+.|++++. ++|+.|..+|.|++++.... . .....|... ..+|.++++|+.||.|.|..+.+.+....
T Consensus 40 D~is~~av~~---~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVHD---KFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhhc---ceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 5677777765 57999999999999997433 2 333334333 56899999999999999999988887776
Q ss_pred EeCCCCCeEEEEEcCC-----CCEEEEEeCCCeEEEEECCC--CeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEE
Q 001472 96 LTGHKSNCTAVEFHPF-----GEFFASGCMDTNLKIWDIRK--KGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKV 168 (1072)
Q Consensus 96 l~~h~~~VtsLafSPd-----g~~LaSgs~DGsI~IWDlrt--gk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~I 168 (1072)
+. ...++.+++++|+ .+.+++||..| +.++.-+- .+....+....++|.++.|. |.++|-++.+| |++
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~v 183 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKV 183 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence 65 5678999999997 46899999888 87775321 11112345567889999996 77888888766 899
Q ss_pred EECCCCceEEEeeecCCc------eEEEEEcCCCcEEEEEECCCeEEEEECC
Q 001472 169 WDLTAGKLLHDFKFHEGH------IRSIDFHPLEFLLATGSADRTVKFWDLE 214 (1072)
Q Consensus 169 WDl~tgk~i~~~~~h~g~------ItsLafSPdg~lLaTgS~DGtIrIWDl~ 214 (1072)
||+.+++.+..+...... ...+.|.++.+ |+.|- ..+|+|..++
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGW-GDSVKICSIK 233 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEec-CCeEEEEEEe
Confidence 999999888776643332 35678876654 44444 4578888887
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.4e-05 Score=93.27 Aligned_cols=237 Identities=10% Similarity=0.156 Sum_probs=152.1
Q ss_pred CCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcC----C--
Q 001472 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE----E-- 89 (1072)
Q Consensus 16 g~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~----t-- 89 (1072)
+.|.++.|.-++ .-++.+..+|.|.+-|..+... ........+|.+++|+||+..++..+..+++.+.+-. .
T Consensus 69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 69 DEIVSVQFLADT-NSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred cceEEEEEeccc-ceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 579999999988 6677888889999998765432 2334457889999999999999999988887766431 0
Q ss_pred -----------------CeeEEEEeCC---------------------CCCeEEEEEcCCCCEEEEEe-----CCCeEEE
Q 001472 90 -----------------SKMVRTLTGH---------------------KSNCTAVEFHPFGEFFASGC-----MDTNLKI 126 (1072)
Q Consensus 90 -----------------gk~i~tl~~h---------------------~~~VtsLafSPdg~~LaSgs-----~DGsI~I 126 (1072)
|+.-..+.+. .+.=+.+.|--||++|++.. ....|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 0100111110 11123589999999999842 2268999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe---cCCeEEEEECCC---CceEEEeeecCCceEEEEEcCCCcEEE
Q 001472 127 WDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGG---FDNVVKVWDLTA---GKLLHDFKFHEGHIRSIDFHPLEFLLA 200 (1072)
Q Consensus 127 WDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS---~DGsI~IWDl~t---gk~i~~~~~h~g~ItsLafSPdg~lLa 200 (1072)
||-+ |..-..-....+.-.+++|-|.|.++++.. .|+.|.+|.-+. |.....+......+..++|+.++.+|+
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLA 305 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILA 305 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCcee
Confidence 9965 543333333334457899999999888754 355788887432 222222333344589999999999999
Q ss_pred E---EECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCC--CEEEEEECCcEEEEEec
Q 001472 201 T---GSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDG--RTLFSGFDDNLKVYSWE 255 (1072)
Q Consensus 201 T---gS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG--~~LasGsdg~I~Vwd~~ 255 (1072)
+ ......|++|-+.+.....+....-....-+.|+|.. +..+.+.+|...+++|.
T Consensus 306 v~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 306 VVTSNLENSLVQLWTTGNYHWYLKQELQFSQKALLMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred eeecccccceEEEEEecCeEEEEEEEEeccccccccccCCCceeEEEEecCCcEEEEEEE
Confidence 8 4555569999998865432211111111227888842 33444445555566553
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0004 Score=75.59 Aligned_cols=172 Identities=12% Similarity=0.056 Sum_probs=108.7
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEE
Q 001472 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEF 108 (1072)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLaf 108 (1072)
.+++.|+..|.+++.++.+|.+...+.....--......+++..+++|+.|++.+..|..+...+...+.......+-++
T Consensus 64 dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i 143 (354)
T KOG4649|consen 64 DFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVI 143 (354)
T ss_pred CEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceecccee
Confidence 57889999999999999999888777643332223455678999999999999999999999988887766665666677
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCe--EEEEEecCCCCeEE--EEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecC
Q 001472 109 HPFGEFFASGCMDTNLKIWDIRKKG--CIHTYKGHTRGINT--IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE 184 (1072)
Q Consensus 109 SPdg~~LaSgs~DGsI~IWDlrtgk--~v~~l~~h~~~Vts--LafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~ 184 (1072)
.|-...|+.+...|.|.--...... .+.... ..+++.+ ++. +..+..+.-||.+.-+| ..|+.++.+. ..
T Consensus 144 ~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~-~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~-t~ 217 (354)
T KOG4649|consen 144 APGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT-RFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA-TK 217 (354)
T ss_pred cCCCceEEEEeccceEEEEccCCCCcceehhhh-cCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec-CC
Confidence 7734445555566766655554442 222211 1122211 122 34566677788888888 6677777554 34
Q ss_pred CceEE-EEEc-CCCcEEEEEECCC
Q 001472 185 GHIRS-IDFH-PLEFLLATGSADR 206 (1072)
Q Consensus 185 g~Its-LafS-Pdg~lLaTgS~DG 206 (1072)
++|.. -+-+ |....|..+..+.
T Consensus 218 GpIf~~Pc~s~Ps~q~i~~~~~~C 241 (354)
T KOG4649|consen 218 GPIFMEPCESRPSCQQISLENENC 241 (354)
T ss_pred CceecccccCCCcceEEEEecCCe
Confidence 44421 1112 4444455444443
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00019 Score=79.06 Aligned_cols=202 Identities=16% Similarity=0.242 Sum_probs=130.1
Q ss_pred EEEEecCCCcEEEEEECCCeEEEEECCCC--ceEEEe---eCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEE
Q 001472 20 CISIGKKACRFLITGGDDQKVNLWAIGKP--TALMSL---CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVR 94 (1072)
Q Consensus 20 ~IafSPdg~~lLaTGs~DGtV~IWDl~t~--~~l~sl---~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~ 94 (1072)
.++.+.+| ++||.-. |..|.|=...+. ..+... +...-.=+-++||||+..||.+...|+|.+||+.... +.
T Consensus 2 ~~~~~~~G-k~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf 78 (282)
T PF15492_consen 2 HLALSSDG-KLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LF 78 (282)
T ss_pred ceeecCCC-cEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eE
Confidence 35667777 6665544 556666654322 111111 2222234679999999999999999999999997543 33
Q ss_pred EEeC-------CCCCeEEEEEcCCC------CEEEEEeCCCeEEEEECCC-----CeEEEEEec---CCCCeEEEEEcCC
Q 001472 95 TLTG-------HKSNCTAVEFHPFG------EFFASGCMDTNLKIWDIRK-----KGCIHTYKG---HTRGINTIRFTPD 153 (1072)
Q Consensus 95 tl~~-------h~~~VtsLafSPdg------~~LaSgs~DGsI~IWDlrt-----gk~v~~l~~---h~~~VtsLafSPD 153 (1072)
.+.. ....|..+.|.+.. ..|++-..+|.++-|-+.. ....+.+.. +..+|.++.|+|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 3322 23457777776532 1456666788887776532 233344432 4568999999999
Q ss_pred CCEEEEEecC-----------CeEEEEECCCCceE-----------------------EE---e---eecCCceEEEEEc
Q 001472 154 GRWVVSGGFD-----------NVVKVWDLTAGKLL-----------------------HD---F---KFHEGHIRSIDFH 193 (1072)
Q Consensus 154 G~~LaTGS~D-----------GsI~IWDl~tgk~i-----------------------~~---~---~~h~g~ItsLafS 193 (1072)
.++|++||.. .-|..|.+-++.+- .. + ......|..|..+
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS 238 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS 238 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC
Confidence 9988887631 13666755332110 00 0 0124568999999
Q ss_pred CCCcEEEEEECCCeEEEEECCCCcEEEeeCC
Q 001472 194 PLEFLLATGSADRTVKFWDLETFELIGSTRP 224 (1072)
Q Consensus 194 Pdg~lLaTgS~DGtIrIWDl~tge~i~~~~~ 224 (1072)
|||.+|++.+.+|.|.+|++.+.........
T Consensus 239 Pdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 239 PDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 9999999999999999999998776655443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1e-05 Score=98.81 Aligned_cols=179 Identities=16% Similarity=0.218 Sum_probs=137.6
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEE
Q 001472 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEF 108 (1072)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLaf 108 (1072)
..++.|+.-..+..+|+.+.+...........|.-+.. +++++.+|...|+|.+-|..+.+.++++..|.+.|.++..
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV 225 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence 44666777677888888887777666554545655554 6889999999999999999999999999999999987766
Q ss_pred cCCCCEEEEEeCC---------CeEEEEECCCCeEEEEEecCCCCeEEEEEcCC-CCEEEEEecCCeEEEEECC---CC-
Q 001472 109 HPFGEFFASGCMD---------TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPD-GRWVVSGGFDNVVKVWDLT---AG- 174 (1072)
Q Consensus 109 SPdg~~LaSgs~D---------GsI~IWDlrtgk~v~~l~~h~~~VtsLafSPD-G~~LaTGS~DGsI~IWDl~---tg- 174 (1072)
. |+.|+++|.. ..|++||++..+.+.-+.-+.++ .-+.|+|. ...+++++..|...+.|.. ..
T Consensus 226 ~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~ 302 (1118)
T KOG1275|consen 226 Q--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP 302 (1118)
T ss_pred c--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc
Confidence 5 9999998754 46899999987766655544443 56778873 3468888889999999943 22
Q ss_pred ceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEE
Q 001472 175 KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWD 212 (1072)
Q Consensus 175 k~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWD 212 (1072)
.-+..+......+..+++++++..++.|..+|.|.+|.
T Consensus 303 ~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 303 AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 12233333445599999999999999999999999997
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=4e-06 Score=93.44 Aligned_cols=168 Identities=15% Similarity=0.260 Sum_probs=124.5
Q ss_pred EEEcCC--CCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----eEEE
Q 001472 64 VAFDSA--EVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK-----GCIH 136 (1072)
Q Consensus 64 LafSPd--G~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtg-----k~v~ 136 (1072)
++|+-+ |-.+.+ +.+-.|-+-|+++|-.. .+. ..+.|.++.|...++.++.|+.+|.|..+|++.+ .+.+
T Consensus 217 CawSlni~gyhfs~-G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSV-GLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceeeecc-cccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 466542 334333 44566888888877542 333 5678999999988999999999999999999865 3455
Q ss_pred EEecCCCCeEEEEEcC-CCCEEEEEecCCeEEEEECCCCce---EEEeeecCCceEE--EEEcCCCcEEEEEECCCeEEE
Q 001472 137 TYKGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTAGKL---LHDFKFHEGHIRS--IDFHPLEFLLATGSADRTVKF 210 (1072)
Q Consensus 137 ~l~~h~~~VtsLafSP-DG~~LaTGS~DGsI~IWDl~tgk~---i~~~~~h~g~Its--LafSPdg~lLaTgS~DGtIrI 210 (1072)
.+. |...|+++.... ++++|++.+.+|.|++||++.-+. +.++.+|-..-.- +..++....+++++.|...+|
T Consensus 294 rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 294 RLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred EEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence 554 888899988877 788999999999999999987776 8888877543322 334555678888999999999
Q ss_pred EECCCCcEEEeeCCCCC----CeEEEEEe
Q 001472 211 WDLETFELIGSTRPEVT----GVHAITFH 235 (1072)
Q Consensus 211 WDl~tge~i~~~~~h~~----~VtsIafS 235 (1072)
|.++.+..+.++..... .+.+++|.
T Consensus 373 Wsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 373 WSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred EecccCceeeccCCCCccccccccceehh
Confidence 99999998877654332 34555554
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.1e-06 Score=91.43 Aligned_cols=145 Identities=19% Similarity=0.250 Sum_probs=96.6
Q ss_pred cEEEEEECCCeEEEEECCCCceE-EEeeCCCCCeEEEEEcCCCCEEEEEEc-----CCeEEEEEcCCCeeEEEEeCCCCC
Q 001472 29 RFLITGGDDQKVNLWAIGKPTAL-MSLCGLSSPVDSVAFDSAEVLVLAGAS-----TGVIKLWDLEESKMVRTLTGHKSN 102 (1072)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~~~l-~sl~~hs~~ItsLafSPdG~~LatGS~-----DGsI~IWDl~tgk~i~tl~~h~~~ 102 (1072)
+-+++++.||.+.+++......+ ..+......-.+.++...++++.++.- -+..++|+++..+....-......
T Consensus 102 t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~ 181 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDA 181 (319)
T ss_pred CceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccccc
Confidence 46899999999999987552111 111111111122333345555555432 245667776544332222222344
Q ss_pred eEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeE-EEEEecCCCCeEEEEEcC-CCCEEEEEecCCeEEEEECCC
Q 001472 103 CTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGC-IHTYKGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTA 173 (1072)
Q Consensus 103 VtsLafSPdg-~~LaSgs~DGsI~IWDlrtgk~-v~~l~~h~~~VtsLafSP-DG~~LaTGS~DGsI~IWDl~t 173 (1072)
|.+++-+|.. ..+++|+.||.+.+||.+.... +..++.|..+++.+-|+| ++..|+++++||.+..||..+
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999999965 4677788899999999988753 345678999999999999 677899999999999999763
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2e-06 Score=95.72 Aligned_cols=159 Identities=23% Similarity=0.337 Sum_probs=121.1
Q ss_pred EEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC-----eeEEEE
Q 001472 22 SIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES-----KMVRTL 96 (1072)
Q Consensus 22 afSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tg-----k~i~tl 96 (1072)
+|+-+-.-+-++.+.+-.|-|-+++++..- .+. ....|.++.|...++++..|+.+|.|..+|++.+ .+...+
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl 295 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL 295 (425)
T ss_pred hhhhccceeeecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence 555332223355566677888888776432 222 5678999999999999999999999999999754 344444
Q ss_pred eCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeE---EEEEecCCCCeEEE--EEcCCCCEEEEEecCCeEEEEE
Q 001472 97 TGHKSNCTAVEFHP-FGEFFASGCMDTNLKIWDIRKKGC---IHTYKGHTRGINTI--RFTPDGRWVVSGGFDNVVKVWD 170 (1072)
Q Consensus 97 ~~h~~~VtsLafSP-dg~~LaSgs~DGsI~IWDlrtgk~---v~~l~~h~~~VtsL--afSPDG~~LaTGS~DGsI~IWD 170 (1072)
. |...|+++.... ++.+|.+.+.+|.|.+||.+--++ +..+.+|-..-.-+ ...+....+++++.|...+||.
T Consensus 296 y-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 296 Y-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWS 374 (425)
T ss_pred E-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEe
Confidence 4 889999998877 788999999999999999987666 88888886543333 3345566788899999999999
Q ss_pred CCCCceEEEeeec
Q 001472 171 LTAGKLLHDFKFH 183 (1072)
Q Consensus 171 l~tgk~i~~~~~h 183 (1072)
++.|.++.++...
T Consensus 375 l~~ghLl~tipf~ 387 (425)
T KOG2695|consen 375 LDSGHLLCTIPFP 387 (425)
T ss_pred cccCceeeccCCC
Confidence 9999998887743
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00064 Score=82.09 Aligned_cols=233 Identities=15% Similarity=0.176 Sum_probs=144.9
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCCC--eEEEEEcC--CCCEEEEEE---------cCCeEEEEEcCCCeeEEE
Q 001472 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSP--VDSVAFDS--AEVLVLAGA---------STGVIKLWDLEESKMVRT 95 (1072)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~--ItsLafSP--dG~~LatGS---------~DGsI~IWDl~tgk~i~t 95 (1072)
..++.++.+|.|..+|..+++.+..+...... -..+.-+| .+..++.++ .+|.|..+|..+|+.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 36778888999999999999998877543221 00111111 124555554 367899999999998887
Q ss_pred EeCCCCC--------------------e-EEEEEcCCCCEEEEEeCCC------------------eEEEEECCCCeEEE
Q 001472 96 LTGHKSN--------------------C-TAVEFHPFGEFFASGCMDT------------------NLKIWDIRKKGCIH 136 (1072)
Q Consensus 96 l~~h~~~--------------------V-tsLafSPdg~~LaSgs~DG------------------sI~IWDlrtgk~v~ 136 (1072)
+...... + ....+.+.+..+++++.++ .|+-+|..+|+.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 6542110 1 1234444566778877665 79999999999988
Q ss_pred EEecCCCCeE------EEEEc----CCCC---EEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEE-
Q 001472 137 TYKGHTRGIN------TIRFT----PDGR---WVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATG- 202 (1072)
Q Consensus 137 ~l~~h~~~Vt------sLafS----PDG~---~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTg- 202 (1072)
.+........ ...+. -+|. .+++++.+|.+..+|..+|+.+....... ..++.+| ..++.+
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~ 345 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGA 345 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEcc
Confidence 8753211111 11111 1333 57778889999999999999988765321 1233444 233332
Q ss_pred -----------------ECCCeEEEEECCCCcEEEeeCCCC--------CCe--EEEEEeCCCCEEEEE-ECCcEEEEEe
Q 001472 203 -----------------SADRTVKFWDLETFELIGSTRPEV--------TGV--HAITFHPDGRTLFSG-FDDNLKVYSW 254 (1072)
Q Consensus 203 -----------------S~DGtIrIWDl~tge~i~~~~~h~--------~~V--tsIafSPDG~~LasG-sdg~I~Vwd~ 254 (1072)
..+|.|.-+|+.+++.+....... .+. ..+. -.+..|+++ .++.++.+|.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~ 423 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDA 423 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEEC
Confidence 246789999999999887765431 111 1122 234555554 5677888888
Q ss_pred cCCeeecccccCCC
Q 001472 255 EPVICHDSVDMGWS 268 (1072)
Q Consensus 255 ~s~~~~~~l~~~~s 268 (1072)
+++...-..+.+..
T Consensus 424 ~tG~~lW~~~~~~~ 437 (488)
T cd00216 424 TTGKELWKFRTPSG 437 (488)
T ss_pred CCCceeeEEECCCC
Confidence 88877666655433
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0004 Score=87.85 Aligned_cols=199 Identities=16% Similarity=0.195 Sum_probs=138.2
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC----C--
Q 001472 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR----K-- 131 (1072)
Q Consensus 58 s~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlr----t-- 131 (1072)
...|.++.|..++..++.+...|.|.+-|.++..... ...-...|.+++|+||++.++..+..+++.+-+-. .
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 3579999999999999999999999999887765422 23346789999999999999998888877765421 0
Q ss_pred -----------------CeEEEEEecC---------------------CCCeEEEEEcCCCCEEEEEe----cC-CeEEE
Q 001472 132 -----------------KGCIHTYKGH---------------------TRGINTIRFTPDGRWVVSGG----FD-NVVKV 168 (1072)
Q Consensus 132 -----------------gk~v~~l~~h---------------------~~~VtsLafSPDG~~LaTGS----~D-GsI~I 168 (1072)
|+....+.+. .+.=..++|--||+++++.. .+ ..|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 1111112211 01123589999999998843 23 68999
Q ss_pred EECCCCceEEEeeecCCceEEEEEcCCCcEEEEEE---CCCeEEEEECCC---CcEEEeeCCCCCCeEEEEEeCCCCEEE
Q 001472 169 WDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS---ADRTVKFWDLET---FELIGSTRPEVTGVHAITFHPDGRTLF 242 (1072)
Q Consensus 169 WDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS---~DGtIrIWDl~t---ge~i~~~~~h~~~VtsIafSPDG~~La 242 (1072)
||-+ |.+-..-....+.-.+++|-|.|.++++-. .|+.|.+|.-+. ++....+......+..++|+.++..|+
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLA 305 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILA 305 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCcee
Confidence 9976 654443333445557899999999988764 456799987543 333333444445599999999999999
Q ss_pred E---EECCc-EEEEEecCCe
Q 001472 243 S---GFDDN-LKVYSWEPVI 258 (1072)
Q Consensus 243 s---Gsdg~-I~Vwd~~s~~ 258 (1072)
+ ...+. |++|...+..
T Consensus 306 v~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 306 VVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eeecccccceEEEEEecCeE
Confidence 8 33344 8899876543
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0031 Score=73.20 Aligned_cols=295 Identities=14% Similarity=0.112 Sum_probs=143.4
Q ss_pred ECCCCceEEEeeCCCC-----CeEEEEEcCCCCEEEEEEc-C--CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEE
Q 001472 44 AIGKPTALMSLCGLSS-----PVDSVAFDSAEVLVLAGAS-T--GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFF 115 (1072)
Q Consensus 44 Dl~t~~~l~sl~~hs~-----~ItsLafSPdG~~LatGS~-D--GsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~L 115 (1072)
|-.+|..+..+..... ..+.-+|.++|+.|+.++. + ..+++.|+.+++..+...+.........++++++.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 5566766666654333 2233467789987777665 3 478888999988776555433434457788988888
Q ss_pred EEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEc--CCCCEEEEEec----------------------CCeEEEEEC
Q 001472 116 ASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFT--PDGRWVVSGGF----------------------DNVVKVWDL 171 (1072)
Q Consensus 116 aSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafS--PDG~~LaTGS~----------------------DGsI~IWDl 171 (1072)
+.......|+-.|+.+++....+......+-...|. .|+..++..-. ...|...|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 776666789999999988766666666655555664 45665543211 124777788
Q ss_pred CCCceEEEeeecCCceEEEEEcCCC-cEEEEEEC---CC-eEEEEECCC-CcEEEeeCCC--CCCeEEEEEeCCCCEEEE
Q 001472 172 TAGKLLHDFKFHEGHIRSIDFHPLE-FLLATGSA---DR-TVKFWDLET-FELIGSTRPE--VTGVHAITFHPDGRTLFS 243 (1072)
Q Consensus 172 ~tgk~i~~~~~h~g~ItsLafSPdg-~lLaTgS~---DG-tIrIWDl~t-ge~i~~~~~h--~~~VtsIafSPDG~~Las 243 (1072)
.+|+....+. ....+..+.|+|.. .+|+.|.. +. .-+||-+++ +.....+..+ ...+..=-|.+||..|..
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 8888766655 46678899999965 44554443 11 124554432 3333333322 233556679999988775
Q ss_pred -EE-CCc----EEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCC----------------eEEEEEcCCCcee
Q 001472 244 -GF-DDN----LKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRN----------------SVGIWVADVSHVE 301 (1072)
Q Consensus 244 -Gs-dg~----I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DG----------------sVrIWDlds~~l~ 301 (1072)
+. .++ |.-++..+..........+ ......++||++++--+.|. -|.++++..+...
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~-~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~ 333 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLMEMPW-CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR 333 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEEEE-S-EEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE
T ss_pred EeecCCCCceEEEeeCCCCCCceEEEeCCc-eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee
Confidence 22 222 4444555544333333332 22344557999887655542 3455666555444
Q ss_pred eeecCC-----CCCCC-CCeeEEEECCCCCccceEEEEEeccCcceEEe
Q 001472 302 PYGVGA-----PEPDQ-SICTEVKFNPPGSHSLEKVGIIGRSTSGFRST 344 (1072)
Q Consensus 302 ~~~v~~-----~~~~~-~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~i 344 (1072)
.+.... ..++. ..-..+.|||||+. |++.....|...++
T Consensus 334 ~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~----VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 334 KLARHDTSWKVLDGDRQVTHPHPSFSPDGKW----VLFRSDMEGPPAVY 378 (386)
T ss_dssp EEEE-------BTTBSSTT----EE-TTSSE----EEEEE-TTSS-EEE
T ss_pred eeeeccCcceeecCCCccCCCCCccCCCCCE----EEEECCCCCCccEE
Confidence 332210 01111 11245799999996 55555555543344
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00011 Score=89.90 Aligned_cols=195 Identities=14% Similarity=0.146 Sum_probs=134.0
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCC-CEEEEEeCCC-----eEEEEECCCC-----
Q 001472 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDT-----NLKIWDIRKK----- 132 (1072)
Q Consensus 64 LafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg-~~LaSgs~DG-----sI~IWDlrtg----- 132 (1072)
-+|++.+..++.|+.+|.|.+++- .-+.++.++.+...+...-|.-++ .+|++.+.|+ .|+||++..-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 456788999999999999988873 344557777777663333344444 5777766654 5999998642
Q ss_pred -eEE--EEEec-----CCCCeEEEEEcCCCCEEEEEecCCeEEEEECC----CCceEEEeeecCCceEEEEEcCCCcEEE
Q 001472 133 -GCI--HTYKG-----HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT----AGKLLHDFKFHEGHIRSIDFHPLEFLLA 200 (1072)
Q Consensus 133 -k~v--~~l~~-----h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~----tgk~i~~~~~h~g~ItsLafSPdg~lLa 200 (1072)
.++ +.+.. ...++.+++.+.+-+.+|+|-.+|.|..+.-. .|....-......+|+.+++..++..++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 233 12211 24578899999998999999999999998521 1111111223467899999999988744
Q ss_pred EEECCCeEEEEECCCCcE-EEeeCCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCCee
Q 001472 201 TGSADRTVKFWDLETFEL-IGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVIC 259 (1072)
Q Consensus 201 TgS~DGtIrIWDl~tge~-i~~~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~ 259 (1072)
.+..-..|.+|.+....+ ...+..+...+.|..|++...-++++....+.+|+.+....
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGP 247 (933)
T ss_pred EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcce
Confidence 444456899999985442 44467777788999998766657777788889998875443
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=6e-05 Score=85.71 Aligned_cols=245 Identities=13% Similarity=0.146 Sum_probs=150.5
Q ss_pred eEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCC-CEEEEEEcCCeEEEE
Q 001472 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE-VLVLAGASTGVIKLW 85 (1072)
Q Consensus 7 ~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG-~~LatGS~DGsI~IW 85 (1072)
.++-+.+|...|..++|+|....++..++.+..|+|.|+.+......+..+ ..+++++|.-+. ++|++|-.+|.|.||
T Consensus 185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 345567888899999999998668999999999999999999888888876 889999999755 678888889999999
Q ss_pred EcCCCee-EEEEeC--CCCCeEEEEE------cCCCCEEEEEeCCCeEEEEECCCC----eEEEEEecCCCCeEEEEEcC
Q 001472 86 DLEESKM-VRTLTG--HKSNCTAVEF------HPFGEFFASGCMDTNLKIWDIRKK----GCIHTYKGHTRGINTIRFTP 152 (1072)
Q Consensus 86 Dl~tgk~-i~tl~~--h~~~VtsLaf------SPdg~~LaSgs~DGsI~IWDlrtg----k~v~~l~~h~~~VtsLafSP 152 (1072)
|++..+- +..+.+ ...+|..++. .+.|.+++.... .+.+|++.-. .++..+. ..+...++.+.+
T Consensus 264 D~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele-~pG~cismqy~~ 340 (463)
T KOG1645|consen 264 DMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELE-PPGICISMQYHG 340 (463)
T ss_pred EccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccC-CCcceeeeeecC
Confidence 9975431 222211 1233433333 223444444332 2566665321 1222222 234455666666
Q ss_pred CCCEEEEEecCC-------eE-EEEECCCCceEEEee-ec-CCc------eEEEEEcCCCcEEE-EEECCCeEEEEECCC
Q 001472 153 DGRWVVSGGFDN-------VV-KVWDLTAGKLLHDFK-FH-EGH------IRSIDFHPLEFLLA-TGSADRTVKFWDLET 215 (1072)
Q Consensus 153 DG~~LaTGS~DG-------sI-~IWDl~tgk~i~~~~-~h-~g~------ItsLafSPdg~lLa-TgS~DGtIrIWDl~t 215 (1072)
-.+.++...... .| .--|...|..+...+ ++ .+. -..+.-.++.++++ +|+....+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 444444433220 11 112223343332222 11 111 01122233445444 444567899999999
Q ss_pred CcEEEeeCCCCCCeEEEEEeC--CCCEEEEEECCcEEEEEecC
Q 001472 216 FELIGSTRPEVTGVHAITFHP--DGRTLFSGFDDNLKVYSWEP 256 (1072)
Q Consensus 216 ge~i~~~~~h~~~VtsIafSP--DG~~LasGsdg~I~Vwd~~s 256 (1072)
++.+..+... .+|..++... .+.||++-.++.+.||.|+.
T Consensus 421 ~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 421 FEVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNES 462 (463)
T ss_pred hheeeecccC-cceeecceeecCCcchhhheecceEEEEecCC
Confidence 9998887665 6777776554 35688888899999998864
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.003 Score=77.11 Aligned_cols=188 Identities=13% Similarity=0.078 Sum_probs=120.3
Q ss_pred EEEEEECCCeEEEEECCCCceEEEeeCCC-CCeE---E-------EEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeC
Q 001472 30 FLITGGDDQKVNLWAIGKPTALMSLCGLS-SPVD---S-------VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG 98 (1072)
Q Consensus 30 lLaTGs~DGtV~IWDl~t~~~l~sl~~hs-~~It---s-------LafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~ 98 (1072)
.|++++.++.|.-+|..+++.+..+.... ..+. + +++ .+..+++++.++.|.-+|..+|+.+.....
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 67777888999999999999888765321 1111 1 122 235677888899999999999999877642
Q ss_pred CCCC-eEEEEEcC--CCCEEEEEeC------CCeEEEEECCCCeEEEEEecCCC--------------------------
Q 001472 99 HKSN-CTAVEFHP--FGEFFASGCM------DTNLKIWDIRKKGCIHTYKGHTR-------------------------- 143 (1072)
Q Consensus 99 h~~~-VtsLafSP--dg~~LaSgs~------DGsI~IWDlrtgk~v~~l~~h~~-------------------------- 143 (1072)
.... -..+.-.| .+..++++.. +|.|+.+|..+|+.+..+..-..
T Consensus 149 ~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~ 228 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAW 228 (527)
T ss_pred ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCcc
Confidence 1110 00111112 1334555432 68999999999998877543211
Q ss_pred -----CeE-EEEEcCCCCEEEEEecC-----C-----------eEEEEECCCCceEEEeeecCCce---------EEEEE
Q 001472 144 -----GIN-TIRFTPDGRWVVSGGFD-----N-----------VVKVWDLTAGKLLHDFKFHEGHI---------RSIDF 192 (1072)
Q Consensus 144 -----~Vt-sLafSPDG~~LaTGS~D-----G-----------sI~IWDl~tgk~i~~~~~h~g~I---------tsLaf 192 (1072)
.++ .+.+.+...+++.+..+ + .|.-.|+++|+....++.....+ .-+.+
T Consensus 229 ~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~ 308 (527)
T TIGR03075 229 KTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDL 308 (527)
T ss_pred ccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEe
Confidence 011 23556655556555421 2 68888999999988887422221 11223
Q ss_pred cCCCc---EEEEEECCCeEEEEECCCCcEE
Q 001472 193 HPLEF---LLATGSADRTVKFWDLETFELI 219 (1072)
Q Consensus 193 SPdg~---lLaTgS~DGtIrIWDl~tge~i 219 (1072)
..+|+ .++.+..+|.++++|-.+|+.+
T Consensus 309 ~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 309 KKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 34565 7889999999999999999876
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00075 Score=74.51 Aligned_cols=221 Identities=13% Similarity=0.169 Sum_probs=128.1
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCCC--eeEEEE---eCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 001472 63 SVAFDSAEVLVLAGASTGVIKLWDLEES--KMVRTL---TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHT 137 (1072)
Q Consensus 63 sLafSPdG~~LatGS~DGsI~IWDl~tg--k~i~tl---~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~ 137 (1072)
.++.+.+|+.||+. .|..|.|-..++. ..+... +...-.-.-++|+||+..||.+...|+|++||+-. ..+..
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV 79 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence 35667888888775 5677877765542 122222 22333467899999999999999999999999864 33434
Q ss_pred Eec-------CCCCeEEEEEcCCC------CEEEEEecCCeEEEEECCC-----CceEEEeee---cCCceEEEEEcCCC
Q 001472 138 YKG-------HTRGINTIRFTPDG------RWVVSGGFDNVVKVWDLTA-----GKLLHDFKF---HEGHIRSIDFHPLE 196 (1072)
Q Consensus 138 l~~-------h~~~VtsLafSPDG------~~LaTGS~DGsI~IWDl~t-----gk~i~~~~~---h~g~ItsLafSPdg 196 (1072)
+.. ....|..+.|.+.. ..|++-...|.++-|-+.. .+..+.|.. +...|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 332 12456777776532 1456666788887776532 233444442 35679999999998
Q ss_pred cEEEEEECCCe-----------EEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCCeee-cccc
Q 001472 197 FLLATGSADRT-----------VKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICH-DSVD 264 (1072)
Q Consensus 197 ~lLaTgS~DGt-----------IrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~-~~l~ 264 (1072)
++|++||.... +..|.+-++.+... ...+.+...-.... ...+|.+-+.... ....
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk----------~v~~~~~~~~~~~~--~~~~~~~~~~~~fs~~~~ 227 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK----------QVTSSEDDITASSK--RRGLLRIPSFKFFSRQGQ 227 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEE----------EccccCcccccccc--ccceeeccceeeeecccc
Confidence 88888874321 22232222211111 00011111100000 0112222111111 1122
Q ss_pred cCCCeeeeEEecCCCEEEEEEcCCeEEEEEcCC
Q 001472 265 MGWSTLGDLCINDGKLLGCSFYRNSVGIWVADV 297 (1072)
Q Consensus 265 ~~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds 297 (1072)
....+..+-.+|||.+||+...+|.|.+|++..
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 234566777889999999999999999999854
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.7e-05 Score=90.41 Aligned_cols=110 Identities=10% Similarity=0.157 Sum_probs=86.2
Q ss_pred eEEEEEecCCCcEEEEEEC----CCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeE
Q 001472 18 VNCISIGKKACRFLITGGD----DQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMV 93 (1072)
Q Consensus 18 Vt~IafSPdg~~lLaTGs~----DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i 93 (1072)
-+-+.|+|.. .++++++. .|.|.||- ++|++-.... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+..
T Consensus 18 sti~SWHPse-PlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 18 STISSWHPSE-PLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred ccccccCCCC-ceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 3445799998 67777764 58898885 3444322111 1223567999999989999999999999998887776
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001472 94 RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130 (1072)
Q Consensus 94 ~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlr 130 (1072)
.....|..+|..+.|+++|..++++..-|.|.+|...
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 6667799999999999999999999999999999865
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.003 Score=73.29 Aligned_cols=291 Identities=10% Similarity=0.052 Sum_probs=144.6
Q ss_pred ccCceEEEEecCCCCeEEE-----EEecCCCcEEEEEECCCeE--EEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEE
Q 001472 3 KRGYKLQEFVAHSANVNCI-----SIGKKACRFLITGGDDQKV--NLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLA 75 (1072)
Q Consensus 3 ktGk~I~~L~gHsg~Vt~I-----afSPdg~~lLaTGs~DGtV--~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~Lat 75 (1072)
.+|..+.+|..+.+.-..+ +|.+||.++|+.+..||.- .+.|+.+++..+...+.........++++++.++.
T Consensus 18 ~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y 97 (386)
T PF14583_consen 18 DTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY 97 (386)
T ss_dssp TT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE
T ss_pred CCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE
Confidence 4677777776665544433 5778897888888777764 45577777765554433233335677898888877
Q ss_pred EEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEc--CCCCEEEEEeC----------------------CCeEEEEECCC
Q 001472 76 GASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFH--PFGEFFASGCM----------------------DTNLKIWDIRK 131 (1072)
Q Consensus 76 GS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafS--Pdg~~LaSgs~----------------------DGsI~IWDlrt 131 (1072)
......|.-.|+.+.+....+......+-...|. .++..++-.-. ...|.-.|+.+
T Consensus 98 v~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t 177 (386)
T PF14583_consen 98 VKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT 177 (386)
T ss_dssp EETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT
T ss_pred EECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC
Confidence 6666789999999988766666556656556664 34555433211 13466678888
Q ss_pred CeEEEEEecCCCCeEEEEEcCCC-CEEEEEecC---C-eEEEEECCC-CceEEEeeec--CCceEEEEEcCCCcEEEEEE
Q 001472 132 KGCIHTYKGHTRGINTIRFTPDG-RWVVSGGFD---N-VVKVWDLTA-GKLLHDFKFH--EGHIRSIDFHPLEFLLATGS 203 (1072)
Q Consensus 132 gk~v~~l~~h~~~VtsLafSPDG-~~LaTGS~D---G-sI~IWDl~t-gk~i~~~~~h--~g~ItsLafSPdg~lLaTgS 203 (1072)
|+....+. ....+..+.|+|.. .+|..|-+. . .-+||-+.+ +.....+..+ ...+..=-|.|||..|..-+
T Consensus 178 G~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~ 256 (386)
T PF14583_consen 178 GERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDS 256 (386)
T ss_dssp --EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEE
T ss_pred CceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEe
Confidence 77555554 55678899999954 445554431 1 124454432 3333333222 22345557999998766533
Q ss_pred C-----CCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEE-EECC----------------cEEEEEecCCeeec
Q 001472 204 A-----DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS-GFDD----------------NLKVYSWEPVICHD 261 (1072)
Q Consensus 204 ~-----DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~Las-Gsdg----------------~I~Vwd~~s~~~~~ 261 (1072)
. +..|.-+|+.+++....... .....+..++||++++. |++. -|++++........
T Consensus 257 ~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~ 334 (386)
T PF14583_consen 257 YTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK 334 (386)
T ss_dssp EETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEE
T ss_pred ecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee
Confidence 2 44678888888765332211 23556777899998886 4432 24455555444322
Q ss_pred cc---------ccCC--CeeeeEEecCCCEEEE-EEcCCeEEEEEcC
Q 001472 262 SV---------DMGW--STLGDLCINDGKLLGC-SFYRNSVGIWVAD 296 (1072)
Q Consensus 262 ~l---------~~~~--s~i~~l~spDGk~LAs-gs~DGsVrIWDld 296 (1072)
.. .... .--...|+|||++++. +...|...||-++
T Consensus 335 l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 335 LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp EEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred eeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 11 1111 1235678899997654 4467878887543
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00067 Score=82.59 Aligned_cols=210 Identities=13% Similarity=0.104 Sum_probs=134.0
Q ss_pred cCCCCEEEEE-EcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeEEEEEecC
Q 001472 67 DSAEVLVLAG-ASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD----TNLKIWDIRKKGCIHTYKGH 141 (1072)
Q Consensus 67 SPdG~~LatG-S~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~D----GsI~IWDlrtgk~v~~l~~h 141 (1072)
.|+|+.+... -..+.+.++|.++.+....+.-.. ....+.++++|+++++.+.+ +.+...+......+..+...
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 4566544332 224677888888877777665433 44678999999999888642 22333333222222222111
Q ss_pred CCCeEEEEEcCCCCEEEEEecCCeEEEEECCC-----CceEEEeeecCCceEEEEEcCCCcEEEEEEC-CCeEEEEECCC
Q 001472 142 TRGINTIRFTPDGRWVVSGGFDNVVKVWDLTA-----GKLLHDFKFHEGHIRSIDFHPLEFLLATGSA-DRTVKFWDLET 215 (1072)
Q Consensus 142 ~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~t-----gk~i~~~~~h~g~ItsLafSPdg~lLaTgS~-DGtIrIWDl~t 215 (1072)
. ..++.++|++...+ ++.|.++|..+ .+.+..+. -......+.++|||+++++++. +.+|.++|+.+
T Consensus 280 ~----iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 280 R----IEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred H----HHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 0 01334578876653 67899999998 34555555 3455789999999998877764 88999999988
Q ss_pred CcE------------EEeeCCCCCCeEEEEEeCCCCEEEEE-ECCcEEEEEecC----------CeeecccccCCCeeee
Q 001472 216 FEL------------IGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEP----------VICHDSVDMGWSTLGD 272 (1072)
Q Consensus 216 ge~------------i~~~~~h~~~VtsIafSPDG~~LasG-sdg~I~Vwd~~s----------~~~~~~l~~~~s~i~~ 272 (1072)
.+. ...... ..+....+|+++|....+- -|..+..|+++. ......++.++.+-..
T Consensus 353 ~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~ 431 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHN 431 (635)
T ss_pred hhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcccee
Confidence 653 233322 2345678899998755553 577799999876 3344556666666555
Q ss_pred EE------ecCCCEEEEEE
Q 001472 273 LC------INDGKLLGCSF 285 (1072)
Q Consensus 273 l~------spDGk~LAsgs 285 (1072)
.. .+||+||++..
T Consensus 432 ~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 432 HASMGETKEADGKWLVSLN 450 (635)
T ss_pred eecCCCcCCCCCCEEEEcc
Confidence 54 47999998874
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00015 Score=82.67 Aligned_cols=253 Identities=15% Similarity=0.091 Sum_probs=146.8
Q ss_pred EEEEECCCCceEEEeeCCCCCeEEEEEcCCCC-EEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCC-EEEE
Q 001472 40 VNLWAIGKPTALMSLCGLSSPVDSVAFDSAEV-LVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGE-FFAS 117 (1072)
Q Consensus 40 V~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~-~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~-~LaS 117 (1072)
++..+-.+.+....+..+...|..++|+|..+ ++..++.+..|.|.|+++...+..+..+ ..+++++|.-|.. +|+.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 44444444455555677788899999999776 7888899999999999999888888866 7899999988765 6777
Q ss_pred EeCCCeEEEEECCCCeE-EEEEec--CCCCeEEEEEcC------CCCEEEEEecCCeEEEEECCC--CceEEEeee-cCC
Q 001472 118 GCMDTNLKIWDIRKKGC-IHTYKG--HTRGINTIRFTP------DGRWVVSGGFDNVVKVWDLTA--GKLLHDFKF-HEG 185 (1072)
Q Consensus 118 gs~DGsI~IWDlrtgk~-v~~l~~--h~~~VtsLafSP------DG~~LaTGS~DGsI~IWDl~t--gk~i~~~~~-h~g 185 (1072)
|...|.|+|||++..+- +..+.+ ...+|..++.-+ .|.+|+....+ +..|.+.. +........ ..+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCc
Confidence 78899999999986442 222211 223444444332 34445544433 45565432 122221221 245
Q ss_pred ceEEEEEcCCCcEEE-EEECCC------eEE-EEECCCCcEEEeeCCCC-CC-------eEEEEEeCCCCEEEEEE--CC
Q 001472 186 HIRSIDFHPLEFLLA-TGSADR------TVK-FWDLETFELIGSTRPEV-TG-------VHAITFHPDGRTLFSGF--DD 247 (1072)
Q Consensus 186 ~ItsLafSPdg~lLa-TgS~DG------tIr-IWDl~tge~i~~~~~h~-~~-------VtsIafSPDG~~LasGs--dg 247 (1072)
.+.++.+++..+.++ +.-.+. .|- -.|...|..+....... +. -..+.-.++..+++... .+
T Consensus 332 ~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn 411 (463)
T KOG1645|consen 332 ICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTN 411 (463)
T ss_pred ceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcc
Confidence 566677776444443 332211 011 11222333332221111 10 11122234556666533 34
Q ss_pred cEEEEEecCCeeecccccCCCeeeeEEe--cCCCEEEEEEcCCeEEEEEcC
Q 001472 248 NLKVYSWEPVICHDSVDMGWSTLGDLCI--NDGKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 248 ~I~Vwd~~s~~~~~~l~~~~s~i~~l~s--pDGk~LAsgs~DGsVrIWDld 296 (1072)
.+.+||..+......+............ ..+.||+.- .|..++||..+
T Consensus 412 ~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 412 ELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred eeEEeccchhheeeecccCcceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 5999999988888877776333333322 234466655 56778888654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00067 Score=80.86 Aligned_cols=225 Identities=11% Similarity=0.048 Sum_probs=117.6
Q ss_pred eeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 001472 54 LCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG 133 (1072)
Q Consensus 54 l~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk 133 (1072)
+......+..+.++|+|+++++ +.+|...|+.....+.... +....++|.+.++ +|+-...+.|.|+.--+..
T Consensus 28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcCccc
Confidence 3344556789999999999999 4578888888555444332 2345688988554 6766668889997322222
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEEC
Q 001472 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213 (1072)
Q Consensus 134 ~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl 213 (1072)
....+... ..+..|-. |.+|+..+ ++.|.+||+.+++.+..+... .|..+.|+++|.+++..+.+ .+.|++.
T Consensus 101 ~~k~i~~~-~~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 101 VVKSIKLP-FSVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp TT-----S-S-EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred cceEEcCC-cccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 22233321 22344333 77777665 448999999999999998743 38999999999999988865 6777765
Q ss_pred CCC-----------cEEEeeCCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEE
Q 001472 214 ETF-----------ELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLG 282 (1072)
Q Consensus 214 ~tg-----------e~i~~~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LA 282 (1072)
+.. ..+..+......|.+.+|..+ .++..+.+.++. +-.+.............-.-..+..+.+.
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly 248 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLY 248 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEEE--EETTEEEEEEE-SS--EEEEEETTTTEEE
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEEE--EEcCCcceEEEcCCceEEEEEEccCCEEE
Confidence 432 022222221456899999877 444444446655 33333222111122222222334456677
Q ss_pred EEEcCCeEEEEEcCC
Q 001472 283 CSFYRNSVGIWVADV 297 (1072)
Q Consensus 283 sgs~DGsVrIWDlds 297 (1072)
+...|+.|..+.++.
T Consensus 249 ~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 249 LIDRDGNVISYELDL 263 (443)
T ss_dssp EE-TT--EEEEE--H
T ss_pred EEECCCCEEEEEECH
Confidence 777777777776653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00021 Score=84.77 Aligned_cols=196 Identities=15% Similarity=0.156 Sum_probs=128.3
Q ss_pred CceEEEEecCCCCeEEEEEecCCCcEEEEEECC---CeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEc-CC
Q 001472 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDD---QKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS-TG 80 (1072)
Q Consensus 5 Gk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~D---GtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~-DG 80 (1072)
|+..+.+..-...+..-+|+|++..+.+..-.. ..+.++++.++.....+. ..+.-...+|+|||++|+.+.. ||
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC
Confidence 555555555556777788999996644443222 359999998876555443 3344457899999998777654 44
Q ss_pred --eEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 001472 81 --VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD-T--NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR 155 (1072)
Q Consensus 81 --sI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~D-G--sI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~ 155 (1072)
.|+++|+..+...+ +....+.-..-.|+|||++++..+.. | .|+++|...+.. ..+......-....|+|||+
T Consensus 261 ~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~ 338 (425)
T COG0823 261 SPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGD 338 (425)
T ss_pred CccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCC
Confidence 57777887776433 55444445578899999988887653 3 477788776654 33333333334889999999
Q ss_pred EEEEEecC-Ce--EEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEEC
Q 001472 156 WVVSGGFD-NV--VKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA 204 (1072)
Q Consensus 156 ~LaTGS~D-Gs--I~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~ 204 (1072)
+|+..+.. |. |.++|+.++.....+. .......-.|.+++..+...+.
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 99887743 43 7777777666433333 3333455678888877765544
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.10 E-value=9.5e-06 Score=62.86 Aligned_cols=39 Identities=28% Similarity=0.634 Sum_probs=37.0
Q ss_pred CceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEE
Q 001472 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWA 44 (1072)
Q Consensus 5 Gk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWD 44 (1072)
|++++.|.+|.+.|.+|+|+|++ .+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 57889999999999999999997 8999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00022 Score=84.61 Aligned_cols=203 Identities=15% Similarity=0.086 Sum_probs=128.7
Q ss_pred CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEe---CC-CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 001472 80 GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGC---MD-TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR 155 (1072)
Q Consensus 80 GsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs---~D-GsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~ 155 (1072)
+.+.+-|.+ +.....+......+..-+|+|++..++... .. ..++++|+.+++...... ..+.-....|+|||+
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 345555554 555566665667788889999998655542 22 469999999887555444 333345679999999
Q ss_pred EEEEEe-cCC--eEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEEC-CC--eEEEEECCCCcEEEeeCCCCCCe
Q 001472 156 WVVSGG-FDN--VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA-DR--TVKFWDLETFELIGSTRPEVTGV 229 (1072)
Q Consensus 156 ~LaTGS-~DG--sI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~-DG--tIrIWDl~tge~i~~~~~h~~~V 229 (1072)
+|+.+. .|| .|+++|+.++.... +....+.-..-.|+|||+.|+..+. .| .|.++++..... ..+......-
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~ 328 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGN 328 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCC
Confidence 887655 444 57778887776433 4433444457789999998887764 33 477777776554 3333333333
Q ss_pred EEEEEeCCCCEEEEEE--CCc--EEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEc
Q 001472 230 HAITFHPDGRTLFSGF--DDN--LKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFY 286 (1072)
Q Consensus 230 tsIafSPDG~~LasGs--dg~--I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~ 286 (1072)
..-.|+|||++|+..+ ++. +.+++.........+..........+.++|..+...+.
T Consensus 329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEecc
Confidence 4788999999999865 343 45555544443344444444445556677776665543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00052 Score=84.29 Aligned_cols=202 Identities=10% Similarity=0.147 Sum_probs=135.3
Q ss_pred CeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCC-CEEEEEEcCC-----eEEEEEcCCC
Q 001472 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE-VLVLAGASTG-----VIKLWDLEES 90 (1072)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG-~~LatGS~DG-----sI~IWDl~tg 90 (1072)
.|.| |++.+ ..++.|+.+|.|.+++- ..+.+..+..+...|...-|.-++ .+|++.+.|+ .|+||+++.-
T Consensus 27 ~isc--~~s~~-~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISC--CSSST-GSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeE--EcCCC-ceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 4555 45665 68999999999988873 334446677777764444444444 6777766654 5899998632
Q ss_pred ------eeEE--EEeC-----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC----CCeEEEEEecCCCCeEEEEEcCC
Q 001472 91 ------KMVR--TLTG-----HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR----KKGCIHTYKGHTRGINTIRFTPD 153 (1072)
Q Consensus 91 ------k~i~--tl~~-----h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlr----tgk~v~~l~~h~~~VtsLafSPD 153 (1072)
.++. .+.. ...++.+++.+.+-+.+|+|-.+|.|..+.-+ .|...........+|+.+.+..+
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 1221 1112 24568899999999999999999999998521 12222222335678999999999
Q ss_pred CCEEEEEecCCeEEEEECCCCce-EEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeC
Q 001472 154 GRWVVSGGFDNVVKVWDLTAGKL-LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR 223 (1072)
Q Consensus 154 G~~LaTGS~DGsI~IWDl~tgk~-i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~ 223 (1072)
+..++.+..-..|.+|.+....+ ...+..|...+.|..+++....+++++. ..|.+||.........+.
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 98744444456799999874332 4446777888999999876554555553 579999988554444443
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.014 Score=68.53 Aligned_cols=282 Identities=16% Similarity=0.145 Sum_probs=181.5
Q ss_pred EEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEc-CCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEE
Q 001472 40 VNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS-TGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASG 118 (1072)
Q Consensus 40 V~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~-DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSg 118 (1072)
+.+++..+......+..+. ....+.+.+++..+++... ...+...+................-..+.+++.+..+++.
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence 6666655554444444333 5567888888865555433 2245555554222222122111334567888888855544
Q ss_pred -eCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEec---CCeEEEEECCCCceEEEeeecCCceEEEEEcC
Q 001472 119 -CMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF---DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHP 194 (1072)
Q Consensus 119 -s~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~---DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSP 194 (1072)
..++.|.+.|.......+...... ....++|+++++.+.++.. ++.+.+.|..+++..........+ ..+++.|
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred cCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 446889999988777777665333 5688999999988777665 689999999999888876544444 8899999
Q ss_pred CCcEEEEEE-CCCeEEEEECCCCcEEE-e---eCCCCCCeEEEEEeCCCCEEEEEECC----cEEEEEecCCeeecc-cc
Q 001472 195 LEFLLATGS-ADRTVKFWDLETFELIG-S---TRPEVTGVHAITFHPDGRTLFSGFDD----NLKVYSWEPVICHDS-VD 264 (1072)
Q Consensus 195 dg~lLaTgS-~DGtIrIWDl~tge~i~-~---~~~h~~~VtsIafSPDG~~LasGsdg----~I~Vwd~~s~~~~~~-l~ 264 (1072)
+|..+++.. .++.|.++|........ . ..........+.++++|.++.+..++ .+.+.+......... ..
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 999666665 68899999977665542 1 11222345789999999987775433 566666666555443 22
Q ss_pred cCC-CeeeeEEecCCCEEEEEEcC-CeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCC
Q 001472 265 MGW-STLGDLCINDGKLLGCSFYR-NSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 265 ~~~-s~i~~l~spDGk~LAsgs~D-GsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs 325 (1072)
... .+......|+|+++.+.... +.+.+-|.....+....... ......+..++|.+...
T Consensus 250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~ 311 (381)
T COG3391 250 VGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG-NEALGEPVSIAISPLYD 311 (381)
T ss_pred cccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc-ccccccceeccceeecc
Confidence 222 56677888999988887544 88888887766555543211 23334466667766555
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00049 Score=83.15 Aligned_cols=149 Identities=15% Similarity=0.196 Sum_probs=100.6
Q ss_pred EEecCCCcEEEEEECCCeEEEEECCCCceEEEe-eCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCee---EE--E
Q 001472 22 SIGKKACRFLITGGDDQKVNLWAIGKPTALMSL-CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM---VR--T 95 (1072)
Q Consensus 22 afSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl-~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~---i~--t 95 (1072)
+++..+ .+++.|+.-|.+++|+-..+.....- .+..+.+..+..+++..++|+|+..|.|.++-++.+.. .. .
T Consensus 40 c~dst~-~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 40 CVDATE-EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred EeecCC-ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 344444 78999999999999997666543322 23445566778899999999999999999998875432 11 1
Q ss_pred E-eCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----EEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEE
Q 001472 96 L-TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG----CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWD 170 (1072)
Q Consensus 96 l-~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk----~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWD 170 (1072)
. +.|...|++++|++++..|++|...|.|..-.+.... ..+.+....+.|..+.+. ++ +|++++.-. -.+++
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~-~LLVStl~r-~~Lc~ 195 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QS-YLLVSTLTR-CILCQ 195 (726)
T ss_pred ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cc-eehHhhhhh-hheee
Confidence 1 2367889999999999999999999999988877621 122333345667777765 33 333333222 23455
Q ss_pred CCCC
Q 001472 171 LTAG 174 (1072)
Q Consensus 171 l~tg 174 (1072)
++.+
T Consensus 196 tE~e 199 (726)
T KOG3621|consen 196 TEAE 199 (726)
T ss_pred cchh
Confidence 5443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0047 Score=70.67 Aligned_cols=262 Identities=13% Similarity=0.048 Sum_probs=162.9
Q ss_pred CeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEE----------cCCeEEEEEcCCCeeEEEEeCCCC------
Q 001472 38 QKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGA----------STGVIKLWDLEESKMVRTLTGHKS------ 101 (1072)
Q Consensus 38 GtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS----------~DGsI~IWDl~tgk~i~tl~~h~~------ 101 (1072)
+.++++|..+++.+..+.. +-...+..+|+++.+++++ ....|.+||..+-.....+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999988887777653 2334577899999988753 245799999999887765542221
Q ss_pred -CeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECC-CCceE
Q 001472 102 -NCTAVEFHPFGEFFASGCM--DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT-AGKLL 177 (1072)
Q Consensus 102 -~VtsLafSPdg~~LaSgs~--DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~-tgk~i 177 (1072)
....+.++.||+++++... --.|.|.|+..++.+..+.... +..+--+.+ +-|.+-+.||.+....+. .|+..
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEET-TEEEEEETTSCEEEEEETSTSSEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecCC-CceEEEecCCceEEEEECCCCCEe
Confidence 2234678889998887644 4679999999999988887432 222221222 347777889999998887 45554
Q ss_pred EEee----ecCCc-eEEEEEcCCCcEEEEEECCCeEEEEECCCCcEE--EeeCC----------CCCCeEEEEEeCCCCE
Q 001472 178 HDFK----FHEGH-IRSIDFHPLEFLLATGSADRTVKFWDLETFELI--GSTRP----------EVTGVHAITFHPDGRT 240 (1072)
Q Consensus 178 ~~~~----~h~g~-ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i--~~~~~----------h~~~VtsIafSPDG~~ 240 (1072)
.... ....+ +..-++...+..++..+.+|.|+-.|+...... ..+.. -.++..-+++++....
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 2221 11122 223344445556666788999999888764421 11110 1134566888876666
Q ss_pred EEEE----ECC-------cEEEEEecCCeeecccccCCCeeeeEEecCCC-EEEEE-EcCCeEEEEEcCCCceeeee
Q 001472 241 LFSG----FDD-------NLKVYSWEPVICHDSVDMGWSTLGDLCINDGK-LLGCS-FYRNSVGIWVADVSHVEPYG 304 (1072)
Q Consensus 241 LasG----sdg-------~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk-~LAsg-s~DGsVrIWDlds~~l~~~~ 304 (1072)
|++- .++ .|.+||..+.+.+..++..........+.|.+ +|++. ..++.|.+||..+++.....
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 6552 222 17777888888877777655555666676666 55443 45789999999877655443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.01 E-value=3e-06 Score=76.43 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=59.5
Q ss_pred CCCCCeeEEEECCCCCccceEEEEEeccCcceEEeecCCcccceEEEeecCCCCccc-eeeeecCCCCCCcCCCCChhhh
Q 001472 310 PDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDSTGGKPV-ASQKIGPLNSPKVVPPLDSEEI 388 (1072)
Q Consensus 310 ~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD~et~eI~~i~iDs~gGepv-~~~~~sP~~s~k~~~~~~~~~l 388 (1072)
.....|.+++|+|..+ ++++|+..|+..+++|+ +||++ |....+||++.|+|++.||+.|
T Consensus 7 ~~~~~v~~~~F~PfED-----vLgvGh~~G~sSiiVPG--------------sGe~NfDs~e~NP~et~kqRrE~EV~~L 67 (80)
T PF08149_consen 7 KPGSPVESLRFCPFED-----VLGVGHSKGFSSIIVPG--------------SGEPNFDSLEANPFETKKQRREREVRSL 67 (80)
T ss_pred CCCCeeeeeEEechHH-----eeEeeccCceeEEeccC--------------CCCCCCCcccCCcccchhHHhHHHHHHH
Confidence 4467899999999999 99999999999999999 99999 9999999999999999999999
Q ss_pred hhh
Q 001472 389 SDL 391 (1072)
Q Consensus 389 ~~~ 391 (1072)
|+.
T Consensus 68 LeK 70 (80)
T PF08149_consen 68 LEK 70 (80)
T ss_pred HHh
Confidence 975
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins []. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0023 Score=74.02 Aligned_cols=272 Identities=15% Similarity=0.183 Sum_probs=145.4
Q ss_pred cCCCCEEEEEEc---------CCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 001472 67 DSAEVLVLAGAS---------TGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHT 137 (1072)
Q Consensus 67 SPdG~~LatGS~---------DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~ 137 (1072)
|||+++++.... .+.+.|||+.+++...... ....+....|+|+|+.++... ++.|++++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 578887777432 4689999999876554333 256788999999999999885 68899999877754332
Q ss_pred EecC-----------------CCCeEEEEEcCCCCEEEEEecC-CeEEEEEC---CCCceEEEeeecCCceEEEEEcCCC
Q 001472 138 YKGH-----------------TRGINTIRFTPDGRWVVSGGFD-NVVKVWDL---TAGKLLHDFKFHEGHIRSIDFHPLE 196 (1072)
Q Consensus 138 l~~h-----------------~~~VtsLafSPDG~~LaTGS~D-GsI~IWDl---~tgk~i~~~~~h~g~ItsLafSPdg 196 (1072)
-... -+.-..+.|||||++|+....| ..|..+.+ ..... ....+..+.+-.-|
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRYPKAG 152 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE--BTT
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCcccccccCCCC
Confidence 2111 1123578899999999876543 33333322 11110 00123333332222
Q ss_pred cEEEEEECCCeEEEEECCCCcEEEe--e---CCCCCCeEEEEEeCCCCEEEE-EEC-C----cEEEEEecCCeeec---c
Q 001472 197 FLLATGSADRTVKFWDLETFELIGS--T---RPEVTGVHAITFHPDGRTLFS-GFD-D----NLKVYSWEPVICHD---S 262 (1072)
Q Consensus 197 ~lLaTgS~DGtIrIWDl~tge~i~~--~---~~h~~~VtsIafSPDG~~Las-Gsd-g----~I~Vwd~~s~~~~~---~ 262 (1072)
.-.. .-.+.++|+.+++.... . ......+..+.|.+++..|++ -.+ . .+.++|..++.+.. .
T Consensus 153 ~~np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e 228 (353)
T PF00930_consen 153 DPNP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE 228 (353)
T ss_dssp S-------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE
T ss_pred CcCC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe
Confidence 2111 12467888887765321 1 234456899999999994444 322 2 16666766544322 2
Q ss_pred cccCCCee--eeEEe-cCC-CEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeE-EEECCCCCccceEEEEEecc
Q 001472 263 VDMGWSTL--GDLCI-NDG-KLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTE-VKFNPPGSHSLEKVGIIGRS 337 (1072)
Q Consensus 263 l~~~~s~i--~~l~s-pDG-k~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~Its-VaFSPDGs~lLa~VlaiG~s 337 (1072)
...+|... ...+. +++ .+|.....+|.-+||-++........+ ....-.|.. +.|.++++. ....+.+..
T Consensus 229 ~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~l---T~G~~~V~~i~~~d~~~~~--iyf~a~~~~ 303 (353)
T PF00930_consen 229 TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQL---TSGDWEVTSILGWDEDNNR--IYFTANGDN 303 (353)
T ss_dssp ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEES---S-SSS-EEEEEEEECTSSE--EEEEESSGG
T ss_pred cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecc---ccCceeecccceEcCCCCE--EEEEecCCC
Confidence 23333221 23333 444 456666688877777554433333332 233445544 788888874 222222223
Q ss_pred CcceEEeecCCc-ccceEE
Q 001472 338 TSGFRSTSPDYE-TKDIKT 355 (1072)
Q Consensus 338 tG~~r~ivpD~e-t~eI~~ 355 (1072)
.+..+++..+.. .+++..
T Consensus 304 p~~r~lY~v~~~~~~~~~~ 322 (353)
T PF00930_consen 304 PGERHLYRVSLDSGGEPKC 322 (353)
T ss_dssp TTSBEEEEEETTETTEEEE
T ss_pred CCceEEEEEEeCCCCCeEe
Confidence 344556666655 455544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.2e-05 Score=87.79 Aligned_cols=212 Identities=16% Similarity=0.169 Sum_probs=147.7
Q ss_pred EEEEecCCCCeEEEEEecCCCcEEEEEEC-CCeEEEEECCCCceEEEeeCCCCCeEEEEEc-CCC---CEEEEE-EcCCe
Q 001472 8 LQEFVAHSANVNCISIGKKACRFLITGGD-DQKVNLWAIGKPTALMSLCGLSSPVDSVAFD-SAE---VLVLAG-ASTGV 81 (1072)
Q Consensus 8 I~~L~gHsg~Vt~IafSPdg~~lLaTGs~-DGtV~IWDl~t~~~l~sl~~hs~~ItsLafS-PdG---~~LatG-S~DGs 81 (1072)
++.+..|.+.|.+++.+-+| .++.+++. |..++++|+.+-..+.-++...-+ ..+.|. ..| ..|+++ ..+|.
T Consensus 46 VKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~ 123 (558)
T KOG0882|consen 46 VKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGK 123 (558)
T ss_pred hhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhcccccCC-CceEEecCCCCeeeeEEeecccCCC
Confidence 45678888999999999998 77888777 999999999765544322221111 122222 223 134443 34689
Q ss_pred EEEEEcCCCe--eEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC------CeEEEEEe---------cCCCC
Q 001472 82 IKLWDLEESK--MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK------KGCIHTYK---------GHTRG 144 (1072)
Q Consensus 82 I~IWDl~tgk--~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrt------gk~v~~l~---------~h~~~ 144 (1072)
+.|+|-...- ....-.-|..+|.++.+++-++.+++....|.|.-|.... ......++ .....
T Consensus 124 i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~ 203 (558)
T KOG0882|consen 124 IFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTE 203 (558)
T ss_pred cEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccC
Confidence 9999975432 3333445899999999999999999998899999998762 22222222 23345
Q ss_pred eEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeee--------------------------------cC-CceEEEE
Q 001472 145 INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF--------------------------------HE-GHIRSID 191 (1072)
Q Consensus 145 VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~--------------------------------h~-g~ItsLa 191 (1072)
..++.|+|+|..+.+-+.|..|++++..+|+.++.+.. |. ..-..++
T Consensus 204 pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~ 283 (558)
T KOG0882|consen 204 PTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAV 283 (558)
T ss_pred ccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeE
Confidence 78999999999999999999999999999876554321 11 1234567
Q ss_pred EcCCCcEEEEEECCCeEEEEECCCCcEEEee
Q 001472 192 FHPLEFLLATGSADRTVKFWDLETFELIGST 222 (1072)
Q Consensus 192 fSPdg~lLaTgS~DGtIrIWDl~tge~i~~~ 222 (1072)
|...|++|+.|+-=| |++.++.++.....+
T Consensus 284 fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 284 FDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred EcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 888899998887644 888888887765543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00026 Score=86.04 Aligned_cols=70 Identities=9% Similarity=0.213 Sum_probs=62.7
Q ss_pred eEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001472 18 VNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88 (1072)
Q Consensus 18 Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~ 88 (1072)
+++++|+|.. -+|+.|-.-|.+.+|...+.+.......|..+|..+.||++|..++++..-|.|.+|...
T Consensus 62 atSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHH-HHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 4578999987 788899899999999988877777778899999999999999999999999999999875
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0031 Score=73.83 Aligned_cols=218 Identities=17% Similarity=0.150 Sum_probs=156.8
Q ss_pred eEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEc---CCeEEEEEcCCCeeEE
Q 001472 18 VNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS---TGVIKLWDLEESKMVR 94 (1072)
Q Consensus 18 Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~---DGsI~IWDl~tgk~i~ 94 (1072)
-.++++++.+.+.+++...++.|.+.|............-. ....++|++++..++++.. ++.+.+.|..+++.+.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 34678888886677777778999999977766666654322 5678999999988888766 6889999999998888
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeEEE-E---EecCCCCeEEEEEcCCCCEEEEEecC---CeE
Q 001472 95 TLTGHKSNCTAVEFHPFGEFFASGC-MDTNLKIWDIRKKGCIH-T---YKGHTRGINTIRFTPDGRWVVSGGFD---NVV 166 (1072)
Q Consensus 95 tl~~h~~~VtsLafSPdg~~LaSgs-~DGsI~IWDlrtgk~v~-~---l~~h~~~VtsLafSPDG~~LaTGS~D---GsI 166 (1072)
.......+ ..+++.|+|++++++. .++.|.++|........ . ..........+.++++|.++.+.... +.+
T Consensus 155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence 76654445 8899999999777765 67899999976655443 1 01122345789999999976665543 589
Q ss_pred EEEECCCCceEEEeeecCC-ceEEEEEcCCCcEEEEEEC-CCeEEEEECCCCcEEEeeCCCC---CCeEEEEEeCC
Q 001472 167 KVWDLTAGKLLHDFKFHEG-HIRSIDFHPLEFLLATGSA-DRTVKFWDLETFELIGSTRPEV---TGVHAITFHPD 237 (1072)
Q Consensus 167 ~IWDl~tgk~i~~~~~h~g-~ItsLafSPdg~lLaTgS~-DGtIrIWDl~tge~i~~~~~h~---~~VtsIafSPD 237 (1072)
...|..++.....-..-.. ....+.++|+|..+.+... .+.+.+.|..+........... ..+..+++.+.
T Consensus 234 ~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 234 LKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 9999988877665221112 4667899999999888854 4889999998877766554332 23455555543
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00036 Score=84.20 Aligned_cols=195 Identities=15% Similarity=0.234 Sum_probs=121.6
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEe-CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE-
Q 001472 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT-GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCI- 135 (1072)
Q Consensus 58 s~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~-~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v- 135 (1072)
...|.--+++..+.+++.|+.-|.+++|+-..++....-. +..+.+..+..+++..++|+|+..|.|.++-+..+..-
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3445555677789999999999999999977766543322 23455666778888889999999999999987654321
Q ss_pred ----EEE-ecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCC----ceEEEeeecCCceEEEEEcCCCcEEEEEECCC
Q 001472 136 ----HTY-KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAG----KLLHDFKFHEGHIRSIDFHPLEFLLATGSADR 206 (1072)
Q Consensus 136 ----~~l-~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tg----k~i~~~~~h~g~ItsLafSPdg~lLaTgS~DG 206 (1072)
... +.|...|++++|++++..|++|...|.|.+..+.+. -..+.+-..++.|..+... ++.+|++... .
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~-r 190 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT-R 190 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh-h
Confidence 111 236778999999999999999999999999888762 1122233346677777665 2334443332 2
Q ss_pred eEEEEECCCCc--EEEeeCCCCCCeEEEEEeCC----CCEEEEEECCcEEEEEec
Q 001472 207 TVKFWDLETFE--LIGSTRPEVTGVHAITFHPD----GRTLFSGFDDNLKVYSWE 255 (1072)
Q Consensus 207 tIrIWDl~tge--~i~~~~~h~~~VtsIafSPD----G~~LasGsdg~I~Vwd~~ 255 (1072)
-.+++.+..+ .+..-......-...+|-|. .+-.+.+..-+.++|..+
T Consensus 191 -~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead 244 (726)
T KOG3621|consen 191 -CILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEAD 244 (726)
T ss_pred -hheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEee
Confidence 2344444322 12111111111234445443 233334444445788765
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.002 Score=75.84 Aligned_cols=235 Identities=17% Similarity=0.183 Sum_probs=137.9
Q ss_pred CeEEEEEecCCCcEEEEEECCCeEEEEECCCCce-------------------------------------------EEE
Q 001472 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTA-------------------------------------------LMS 53 (1072)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~-------------------------------------------l~s 53 (1072)
.|+++.|.++. .-|++|...|.|.||.+...+. ...
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58899999987 6789999999999986622110 111
Q ss_pred eeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEe--C------CCCCeEEEEEcC-----CC---CEEEE
Q 001472 54 LCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT--G------HKSNCTAVEFHP-----FG---EFFAS 117 (1072)
Q Consensus 54 l~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~--~------h~~~VtsLafSP-----dg---~~LaS 117 (1072)
+....++|++++.| |=-++++|..+|.+.|.|++....+..-. . ....++++.|.- |+ -.+++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 12335789999987 44589999999999999998887776522 1 234578888862 22 37889
Q ss_pred EeCCCeEEEEECC--C-CeE----EEEEecCCCCeEEEE-EcCC---------------------CCEEEEEecCCeEEE
Q 001472 118 GCMDTNLKIWDIR--K-KGC----IHTYKGHTRGINTIR-FTPD---------------------GRWVVSGGFDNVVKV 168 (1072)
Q Consensus 118 gs~DGsI~IWDlr--t-gk~----v~~l~~h~~~VtsLa-fSPD---------------------G~~LaTGS~DGsI~I 168 (1072)
|...|.+.+|.+. . +.. ......+.++|..+. |+.+ ..+++++ .+..+++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv 239 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRV 239 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEE
Confidence 9999999999874 1 211 122223455555554 3221 1244444 4678999
Q ss_pred EECCCCceEEEeeecCCceEEEEEc-----CCCcEEEEEECCCeEEEEECCCCcEEEeeCCCC----CCeEEEEEeCCCC
Q 001472 169 WDLTAGKLLHDFKFHEGHIRSIDFH-----PLEFLLATGSADRTVKFWDLETFELIGSTRPEV----TGVHAITFHPDGR 239 (1072)
Q Consensus 169 WDl~tgk~i~~~~~h~g~ItsLafS-----Pdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~----~~VtsIafSPDG~ 239 (1072)
+...+.+..+......-....+++- ..+..|++-..+|.|++|.+-..+.+....... ..+....|+++|.
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gd 319 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGD 319 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCC
Confidence 9998877665544221223334442 356788888999999999999988887765532 2355677889999
Q ss_pred EEEEEECCcEEEEEe
Q 001472 240 TLFSGFDDNLKVYSW 254 (1072)
Q Consensus 240 ~LasGsdg~I~Vwd~ 254 (1072)
.++..+...+.+|.+
T Consensus 320 i~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 320 IFYWTGPSEIQLFSV 334 (395)
T ss_dssp EEEE-SSSEEEEEEE
T ss_pred EEEEeCcccEEEEEE
Confidence 887776666555543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0037 Score=69.20 Aligned_cols=199 Identities=8% Similarity=0.148 Sum_probs=119.5
Q ss_pred EEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCC-CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001472 10 EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGL-SSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88 (1072)
Q Consensus 10 ~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~h-s~~ItsLafSPdG~~LatGS~DGsI~IWDl~ 88 (1072)
.+.+-...+..|+|+|+.+.++++....+.|..++. +++.+..+.-. .+..-.+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 566666789999999998788888888999988886 57777776533 3567889998888777766568999999884
Q ss_pred CCe------eEEEEe-----CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---CeEEEEEe--------cCCCCeE
Q 001472 89 ESK------MVRTLT-----GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK---KGCIHTYK--------GHTRGIN 146 (1072)
Q Consensus 89 tgk------~i~tl~-----~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrt---gk~v~~l~--------~h~~~Vt 146 (1072)
... ....+. .++..+-.++|.+.++.|+++....-..+|.+.. ...+.... .....+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 111221 2456689999999888777777665555665543 22221111 1234578
Q ss_pred EEEEcCC-CCEEEEEecCCeEEEEECCCCceEEEeeecC---------CceEEEEEcCCCcEEEEEECCCeEEEE
Q 001472 147 TIRFTPD-GRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE---------GHIRSIDFHPLEFLLATGSADRTVKFW 211 (1072)
Q Consensus 147 sLafSPD-G~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~---------g~ItsLafSPdg~lLaTgS~DGtIrIW 211 (1072)
+++++|. |.+++....+..|..+| .+|+.+..+.... ...-.|+|.++|++.++ +.-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 9999995 55667777888999999 6788776665333 24678999999866554 455555544
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0038 Score=69.06 Aligned_cols=197 Identities=15% Similarity=0.241 Sum_probs=115.1
Q ss_pred EeeCCCCCeEEEEEcCCCC-EEEEEEcCCeEEEEEcCCCeeEEEEeCC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001472 53 SLCGLSSPVDSVAFDSAEV-LVLAGASTGVIKLWDLEESKMVRTLTGH-KSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130 (1072)
Q Consensus 53 sl~~hs~~ItsLafSPdG~-~LatGS~DGsI~IWDl~tgk~i~tl~~h-~~~VtsLafSPdg~~LaSgs~DGsI~IWDlr 130 (1072)
.+.+....+..++|+|+.+ ++++....+.|..++. +|+.++.+.-. .+..-.|++..++.++++.-.++.++++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 3455566799999999765 5555666788888886 57887777543 3567889998777777766568999999884
Q ss_pred CCe------EEEEEe-----cCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCC---CceEEEee--------ecCCceE
Q 001472 131 KKG------CIHTYK-----GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTA---GKLLHDFK--------FHEGHIR 188 (1072)
Q Consensus 131 tgk------~v~~l~-----~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~t---gk~i~~~~--------~h~g~It 188 (1072)
... ....+. .++..+-.++|.+.++.|+++-+..-..+|.+.. ...+.... ..-..+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 112221 2445689999999888777777766666666543 22211111 1234578
Q ss_pred EEEEcCC-CcEEEEEECCCeEEEEECCCCcEEEeeCCCC---------CCeEEEEEeCCCCEEEEEECCcEEE
Q 001472 189 SIDFHPL-EFLLATGSADRTVKFWDLETFELIGSTRPEV---------TGVHAITFHPDGRTLFSGFDDNLKV 251 (1072)
Q Consensus 189 sLafSPd-g~lLaTgS~DGtIrIWDl~tge~i~~~~~h~---------~~VtsIafSPDG~~LasGsdg~I~V 251 (1072)
+++++|. +.+++....+..|..+| ..|+.+..+.... ...-.|+|.++|.+.+++--+-.++
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~ 246 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYR 246 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEE
Confidence 9999995 56777777788899999 5677665543322 2477999999998777775444443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.014 Score=66.98 Aligned_cols=241 Identities=15% Similarity=0.163 Sum_probs=149.3
Q ss_pred EEEEecCCCcEEEEEE----------CCCeEEEEECCCCceEEEeeCCC-------CCeEEEEEcCCCCEEEEEEcC--C
Q 001472 20 CISIGKKACRFLITGG----------DDQKVNLWAIGKPTALMSLCGLS-------SPVDSVAFDSAEVLVLAGAST--G 80 (1072)
Q Consensus 20 ~IafSPdg~~lLaTGs----------~DGtV~IWDl~t~~~l~sl~~hs-------~~ItsLafSPdG~~LatGS~D--G 80 (1072)
.+.++|++ +.++++. ..-.|.+||..+......+.-.. .....++++.+|+++++.... -
T Consensus 40 ~~~~spdg-k~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 40 NVALSPDG-KTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEE-TTS-SEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred ceeECCCC-CEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 35678998 5555432 23469999999887776553221 123457889999999886543 5
Q ss_pred eEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEEe----cCCCC-eEEEEEcCCC
Q 001472 81 VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR-KKGCIHTYK----GHTRG-INTIRFTPDG 154 (1072)
Q Consensus 81 sI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlr-tgk~v~~l~----~h~~~-VtsLafSPDG 154 (1072)
.|.|.|+..++.+.++... + +..+--.. .+-|.+-|.||.+.-..+. .|+...... ....+ +..-++...+
T Consensus 119 SVtVVDl~~~kvv~ei~~P-G-C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~ 195 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTP-G-CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG 195 (342)
T ss_dssp EEEEEETTTTEEEEEEEGT-S-EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred eEEEEECCCCceeeeecCC-C-EEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence 7999999999998887632 2 22222122 2457788899999999887 455442221 11222 2344555555
Q ss_pred CEEEEEecCCeEEEEECCCCceEE--Eeee----------cCCceEEEEEcCCCcEEEEEECC---C-------eEEEEE
Q 001472 155 RWVVSGGFDNVVKVWDLTAGKLLH--DFKF----------HEGHIRSIDFHPLEFLLATGSAD---R-------TVKFWD 212 (1072)
Q Consensus 155 ~~LaTGS~DGsI~IWDl~tgk~i~--~~~~----------h~g~ItsLafSPdg~lLaTgS~D---G-------tIrIWD 212 (1072)
..++..+.+|.|+-.|+....... .+.. ..+.-.-+++++..+.|++.-.. | .|.+||
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 666667889999999987664322 2211 11223457888766555554221 1 488999
Q ss_pred CCCCcEEEeeCCCCCCeEEEEEeCCCC-EEEEEE--CCcEEEEEecCCeeeccccc
Q 001472 213 LETFELIGSTRPEVTGVHAITFHPDGR-TLFSGF--DDNLKVYSWEPVICHDSVDM 265 (1072)
Q Consensus 213 l~tge~i~~~~~h~~~VtsIafSPDG~-~LasGs--dg~I~Vwd~~s~~~~~~l~~ 265 (1072)
+.+++.+..+... .++.+|..+.+.+ +|++.. ++.+.+||..+++....+..
T Consensus 276 ~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 276 LKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp TTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 9999998887653 4578999999877 444433 45699999999888776653
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.009 Score=70.16 Aligned_cols=246 Identities=14% Similarity=0.068 Sum_probs=133.1
Q ss_pred EEEEEcCCCCEEEEE-eCCC----eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCC-----------eEE
Q 001472 104 TAVEFHPFGEFFASG-CMDT----NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN-----------VVK 167 (1072)
Q Consensus 104 tsLafSPdg~~LaSg-s~DG----sI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DG-----------sI~ 167 (1072)
..+.++|+|++++.+ +..| .|+++|+.+|+.+...-.. .....+.|.++++.|+....+. .|+
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 357889999988876 3334 4999999999876533111 1123499999988877665332 488
Q ss_pred EEECCCCce--EEEeeecCCc--eEEEEEcCCCcEEEEEECC----CeEEEEECCCC----cEEEeeCCCCCCeEEEEEe
Q 001472 168 VWDLTAGKL--LHDFKFHEGH--IRSIDFHPLEFLLATGSAD----RTVKFWDLETF----ELIGSTRPEVTGVHAITFH 235 (1072)
Q Consensus 168 IWDl~tgk~--i~~~~~h~g~--ItsLafSPdg~lLaTgS~D----GtIrIWDl~tg----e~i~~~~~h~~~VtsIafS 235 (1072)
.|.+.+... ...+...... ...+.+++++++|+..... ..+++.|+..+ .....+......+....-+
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence 888877643 2344433332 5678899999988765432 35888888874 2233333333334333333
Q ss_pred CCCCEEEEEECC----cEEEEEecCCee---e-cccccCCC-eeeeEEecCCCEEEEEEcCC--eEEEEEcC-CCceeee
Q 001472 236 PDGRTLFSGFDD----NLKVYSWEPVIC---H-DSVDMGWS-TLGDLCINDGKLLGCSFYRN--SVGIWVAD-VSHVEPY 303 (1072)
Q Consensus 236 PDG~~LasGsdg----~I~Vwd~~s~~~---~-~~l~~~~s-~i~~l~spDGk~LAsgs~DG--sVrIWDld-s~~l~~~ 303 (1072)
..+.+++.+.++ .|...++..... . ..+..... .+..+....+.+++....++ .|.+|++. .......
T Consensus 286 ~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~ 365 (414)
T PF02897_consen 286 HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREI 365 (414)
T ss_dssp ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEE
T ss_pred cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeee
Confidence 344455544332 244455554431 1 22233332 23333333444555555555 56777777 4433333
Q ss_pred ecCCCCCCCCCeeEEEECCCCCccceEEEEEeccCcceEEeecCCcccceEEEe
Q 001472 304 GVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIY 357 (1072)
Q Consensus 304 ~v~~~~~~~~~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD~et~eI~~i~ 357 (1072)
. .+..+.+..+...++++.+...+..--+. ..++..|..++++..+.
T Consensus 366 ~----~p~~g~v~~~~~~~~~~~~~~~~ss~~~P---~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 366 P----LPEAGSVSGVSGDFDSDELRFSYSSFTTP---PTVYRYDLATGELTLLK 412 (414)
T ss_dssp E----SSSSSEEEEEES-TT-SEEEEEEEETTEE---EEEEEEETTTTCEEEEE
T ss_pred c----CCcceEEeccCCCCCCCEEEEEEeCCCCC---CEEEEEECCCCCEEEEE
Confidence 3 23455667777777777544433332222 34777777777766543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.8e-05 Score=58.04 Aligned_cols=39 Identities=41% Similarity=0.846 Sum_probs=36.7
Q ss_pred CeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001472 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD 128 (1072)
Q Consensus 90 gk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWD 128 (1072)
++++..+.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0031 Score=75.25 Aligned_cols=145 Identities=16% Similarity=0.174 Sum_probs=87.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEE
Q 001472 99 HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLH 178 (1072)
Q Consensus 99 h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~ 178 (1072)
.......+.++|+|+++++ +.+|...||.......... +....++|.+.++ +|+-...+.|.++.--......
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcCccccce
Confidence 4445788999999999888 4688888888544443222 2345688998655 6666668889997433333322
Q ss_pred EeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCC
Q 001472 179 DFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPV 257 (1072)
Q Consensus 179 ~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~ 257 (1072)
.+.. ...+..|.. |.+|+..+. +.|.+||+.+++.+..+... +|..+.|+++|.+++..+++.+.|++.+..
T Consensus 104 ~i~~-~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 104 SIKL-PFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLE 175 (443)
T ss_dssp -----SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred EEcC-CcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence 3332 223444433 888877765 48999999999999988754 389999999999999999999999887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=7.5e-06 Score=97.09 Aligned_cols=199 Identities=16% Similarity=0.283 Sum_probs=132.7
Q ss_pred CCCeEEEEEecCCC-cEEEEEECCCeEEEEECCCCce--EEEeeCCCCCeEEEEEcC-CCCEEEEEEc----CCeEEEEE
Q 001472 15 SANVNCISIGKKAC-RFLITGGDDQKVNLWAIGKPTA--LMSLCGLSSPVDSVAFDS-AEVLVLAGAS----TGVIKLWD 86 (1072)
Q Consensus 15 sg~Vt~IafSPdg~-~lLaTGs~DGtV~IWDl~t~~~--l~sl~~hs~~ItsLafSP-dG~~LatGS~----DGsI~IWD 86 (1072)
...+.|+++.-+.. .++++|..+|.|.+-.+..... .....++...+++++|++ |.++||+|-. |..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34678888766553 5788999999999988754332 334567888999999998 5567777643 46799999
Q ss_pred cCCC--eeE--EEEeC-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEE
Q 001472 87 LEES--KMV--RTLTG-HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP-DGRWVVSG 160 (1072)
Q Consensus 87 l~tg--k~i--~tl~~-h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSP-DG~~LaTG 160 (1072)
+.++ .+. ..+.+ ......+++|..+.+.+++|.....+.++|++.... ....-....+..+...| .+.|+++-
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhcccceecCCCCCceecc
Confidence 9876 111 11221 334456899998899999998888999999984321 11111233566777788 67777765
Q ss_pred ecCCeEEEEE-CCCCce-EEEee----ecCCceEEEEEcCC--CcEEEEEECCCeEEEEECCC
Q 001472 161 GFDNVVKVWD-LTAGKL-LHDFK----FHEGHIRSIDFHPL--EFLLATGSADRTVKFWDLET 215 (1072)
Q Consensus 161 S~DGsI~IWD-l~tgk~-i~~~~----~h~g~ItsLafSPd--g~lLaTgS~DGtIrIWDl~t 215 (1072)
. ||.|.+|| ...-+. +..+. .....+..++|.|. |.+.+..-..++|++||+..
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 5 99999999 333221 11111 11234889999995 33333334567899998763
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.02 Score=67.33 Aligned_cols=238 Identities=10% Similarity=0.097 Sum_probs=131.4
Q ss_pred eEEEEEecCCCcEEEEEECCCe----EEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCC-----------eE
Q 001472 18 VNCISIGKKACRFLITGGDDQK----VNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTG-----------VI 82 (1072)
Q Consensus 18 Vt~IafSPdg~~lLaTGs~DGt----V~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DG-----------sI 82 (1072)
+..+.++|+|..++++-+..|. |+++|+.+++.+....... ....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3357899999555555555554 9999999997665431111 122499999988877765433 37
Q ss_pred EEEEcCCCee--EEEEeCCCCC--eEEEEEcCCCCEEEEEeCC----CeEEEEECCCC----eEEEEEecCCCCeE-EEE
Q 001472 83 KLWDLEESKM--VRTLTGHKSN--CTAVEFHPFGEFFASGCMD----TNLKIWDIRKK----GCIHTYKGHTRGIN-TIR 149 (1072)
Q Consensus 83 ~IWDl~tgk~--i~tl~~h~~~--VtsLafSPdg~~LaSgs~D----GsI~IWDlrtg----k~v~~l~~h~~~Vt-sLa 149 (1072)
+.|.+.+... ...+...... ...+.+++++++|+..... ..+++.|+..+ .....+......+. .+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 8888876532 2333332222 5678899999987765332 45888898875 22333333333343 343
Q ss_pred EcCCCCEEEEEe---cCCeEEEEECCCCce---EEEeeecCC--ceEEEEEcCCCcEEEEEECCC--eEEEEECC-CCcE
Q 001472 150 FTPDGRWVVSGG---FDNVVKVWDLTAGKL---LHDFKFHEG--HIRSIDFHPLEFLLATGSADR--TVKFWDLE-TFEL 218 (1072)
Q Consensus 150 fSPDG~~LaTGS---~DGsI~IWDl~tgk~---i~~~~~h~g--~ItsLafSPdg~lLaTgS~DG--tIrIWDl~-tge~ 218 (1072)
.. .+.+++... ..+.|...++..... ...+-.+.. .+..+... .+.+++....++ .|++|++. ....
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~~~~~~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-KDYLVLSYRENGSSRLRVYDLDDGKES 362 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-TTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-CCEEEEEEEECCccEEEEEECCCCcEE
Confidence 33 444444433 346788888887652 324444444 34455443 233444444444 48899999 4444
Q ss_pred EEeeCCCCCCeEEEEEeCCCCEEEEEEC-----CcEEEEEecCCe
Q 001472 219 IGSTRPEVTGVHAITFHPDGRTLFSGFD-----DNLKVYSWEPVI 258 (1072)
Q Consensus 219 i~~~~~h~~~VtsIafSPDG~~LasGsd-----g~I~Vwd~~s~~ 258 (1072)
........+.|..+...+++..+..... ..++.||+.++.
T Consensus 363 ~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 363 REIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred eeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 4444444455666666666666654322 235555655544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.013 Score=64.72 Aligned_cols=225 Identities=17% Similarity=0.152 Sum_probs=126.4
Q ss_pred CCCCEEEEEEcCCeEEEEEcCC-CeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE---------
Q 001472 68 SAEVLVLAGASTGVIKLWDLEE-SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHT--------- 137 (1072)
Q Consensus 68 PdG~~LatGS~DGsI~IWDl~t-gk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~--------- 137 (1072)
..++.|+.|+.+| |+++++.. ....... +...|..+...++-+.|++-+ ||.+++|++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578899999998 99999833 3333332 233499999998877776664 59999999875433221
Q ss_pred -----EecCCCCeEEEE--EcCCCCEEEEEecCCeEEEEECCCC-----ceEEEeeecCCceEEEEEcCCCcEEEEEECC
Q 001472 138 -----YKGHTRGINTIR--FTPDGRWVVSGGFDNVVKVWDLTAG-----KLLHDFKFHEGHIRSIDFHPLEFLLATGSAD 205 (1072)
Q Consensus 138 -----l~~h~~~VtsLa--fSPDG~~LaTGS~DGsI~IWDl~tg-----k~i~~~~~h~g~ItsLafSPdg~lLaTgS~D 205 (1072)
.......+..++ -...+...++......|.+|..... +...++. ....+.+++|. ++.|+.|..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence 011223344444 1123333333444558888877653 4556665 34678899998 5667777654
Q ss_pred CeEEEEECCCCcEEEeeCCCC-----------CCeEEEEEeCCCCEEEEEECCcEEEEEecCCeeecccccCCCeeeeEE
Q 001472 206 RTVKFWDLETFELIGSTRPEV-----------TGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLC 274 (1072)
Q Consensus 206 GtIrIWDl~tge~i~~~~~h~-----------~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~ 274 (1072)
...+.|+.++.....+.... .....+.--+++.+|++..+-+ .+.+.. +.........|...-..+
T Consensus 158 -~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g-~fv~~~-G~~~r~~~i~W~~~p~~~ 234 (275)
T PF00780_consen 158 -GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIG-VFVNKN-GEPSRKSTIQWSSAPQSV 234 (275)
T ss_pred -ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceE-EEEcCC-CCcCcccEEEcCCchhEE
Confidence 58889998766543332111 1122232334456666543322 233332 222222222232222222
Q ss_pred ecCCCEEEEEEcCCeEEEEEcCCCceeee
Q 001472 275 INDGKLLGCSFYRNSVGIWVADVSHVEPY 303 (1072)
Q Consensus 275 spDGk~LAsgs~DGsVrIWDlds~~l~~~ 303 (1072)
.-...||++.+ ++.|.||++..+.+...
T Consensus 235 ~~~~pyli~~~-~~~iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 235 AYSSPYLIAFS-SNSIEVRSLETGELVQT 262 (275)
T ss_pred EEECCEEEEEC-CCEEEEEECcCCcEEEE
Confidence 22445666654 56699999987765444
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.024 Score=67.22 Aligned_cols=204 Identities=12% Similarity=0.089 Sum_probs=114.2
Q ss_pred eEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEE-------eCCCCCeEEEEEcCC
Q 001472 39 KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTL-------TGHKSNCTAVEFHPF 111 (1072)
Q Consensus 39 tV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl-------~~h~~~VtsLafSPd 111 (1072)
.|.||+. .|+.+..+.-..+.|.++.|+.+.. |++...||.+++||+.... ...+ .-....+....+..+
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence 4888886 5666666654558999999988655 5555689999999986433 1111 111112222233334
Q ss_pred CCEEEEEeCCCeEEEEECCCCe-EEEEEecCCC---------CeE-EEEEcCCCCEEEEEecCCeEEEEECCCCceEEEe
Q 001472 112 GEFFASGCMDTNLKIWDIRKKG-CIHTYKGHTR---------GIN-TIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180 (1072)
Q Consensus 112 g~~LaSgs~DGsI~IWDlrtgk-~v~~l~~h~~---------~Vt-sLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~ 180 (1072)
| +++-..++.+++..--... ....+..... ... ...++.++...+....++.+.+.+-...+. +
T Consensus 139 G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 139 G--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred C--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 5 3333345555555322211 1111110000 000 023444444555555555666444332211 2
Q ss_pred eecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCC-CCCeEEEEEeCCCCEEEEEECCcEEEE
Q 001472 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPE-VTGVHAITFHPDGRTLFSGFDDNLKVY 252 (1072)
Q Consensus 181 ~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h-~~~VtsIafSPDG~~LasGsdg~I~Vw 252 (1072)
. ..+++..+++||+|++||.-..+|.+.+++..-.+.+..+... ......+.|..+...++. ..+.+.++
T Consensus 214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~-~~~~l~lv 284 (410)
T PF04841_consen 214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLS-WEDELLLV 284 (410)
T ss_pred c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEE-eCCEEEEE
Confidence 2 2468999999999999999999999999987666565555443 345678888876443332 24444444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0028 Score=75.83 Aligned_cols=115 Identities=16% Similarity=0.213 Sum_probs=82.8
Q ss_pred CCeEEEEEcC-CCCEEEEEE----cCCe----EEEEEcCCCeeEEE---EeCCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 001472 59 SPVDSVAFDS-AEVLVLAGA----STGV----IKLWDLEESKMVRT---LTGHKSNCTAVEFHPFGEFFASGCMDTNLKI 126 (1072)
Q Consensus 59 ~~ItsLafSP-dG~~LatGS----~DGs----I~IWDl~tgk~i~t---l~~h~~~VtsLafSPdg~~LaSgs~DGsI~I 126 (1072)
....++.|+. ++..+.+.. .+|. -.+|++..++..+. --.....+.+++++|+.+.|+.|+.||.|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 3446777876 444555432 2342 45666655543211 1136788999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCc
Q 001472 127 WDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK 175 (1072)
Q Consensus 127 WDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk 175 (1072)
||...+..... ...-.+..++|+|+|.+|++|+..|.|.+||+.-..
T Consensus 286 yD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 286 YDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 99876643322 244567899999999999999999999999986543
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.006 Score=71.90 Aligned_cols=256 Identities=14% Similarity=0.188 Sum_probs=133.4
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--------
Q 001472 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK-------- 131 (1072)
Q Consensus 60 ~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrt-------- 131 (1072)
.|..+.|+++..-|++|...|.|.||.+...+... ......-..+.+.+-+ ..++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~~------~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRFS------LNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccccc------ccCCCcceEEehhhCCccccc
Confidence 57899999999999999999999999986544322 0001111112222110 1111222333321
Q ss_pred C-eEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeee--------cCCceEEEEEcC-----CC-
Q 001472 132 K-GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF--------HEGHIRSIDFHP-----LE- 196 (1072)
Q Consensus 132 g-k~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~--------h~g~ItsLafSP-----dg- 196 (1072)
| .+...+....++|++++.|.- .+++.|+.+|.+.|.|++....++.-.. ....++++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 1 133444556789999999844 5899999999999999998888776332 123477787752 33
Q ss_pred --cEEEEEECCCeEEEEECC--C-CcE----EEeeCCCCCCeEEEE-EeCC---------------------CCEEEEEE
Q 001472 197 --FLLATGSADRTVKFWDLE--T-FEL----IGSTRPEVTGVHAIT-FHPD---------------------GRTLFSGF 245 (1072)
Q Consensus 197 --~lLaTgS~DGtIrIWDl~--t-ge~----i~~~~~h~~~VtsIa-fSPD---------------------G~~LasGs 245 (1072)
-.|++|...|.+.+|.+. . +.. ......+.+.|..|. |+.+ ..++++.+
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 478899999999999875 1 211 122223445555554 3221 12677788
Q ss_pred CCcEEEEEecCCeeecccccC-CCeeeeEEe-----cCCCEEEEEEcCCeEEEEEcCC-CceeeeecCCCCCCCCCeeEE
Q 001472 246 DDNLKVYSWEPVICHDSVDMG-WSTLGDLCI-----NDGKLLGCSFYRNSVGIWVADV-SHVEPYGVGAPEPDQSICTEV 318 (1072)
Q Consensus 246 dg~I~Vwd~~s~~~~~~l~~~-~s~i~~l~s-----pDGk~LAsgs~DGsVrIWDlds-~~l~~~~v~~~~~~~~~ItsV 318 (1072)
+..++++..-..+........ .......+. ..+..|++-..+|.|++|.+.. +.+....+. ...+...+...
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~-~~~d~~~~~~s 312 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP-PPLDSRRLSSS 312 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S-S---HHHHTT-
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC-Ccccccccccc
Confidence 888999998766554333221 111122221 2567888889999999998853 222333321 12233455667
Q ss_pred EECCCCC
Q 001472 319 KFNPPGS 325 (1072)
Q Consensus 319 aFSPDGs 325 (1072)
.|+++|+
T Consensus 313 sis~~Gd 319 (395)
T PF08596_consen 313 SISRNGD 319 (395)
T ss_dssp EE-TTS-
T ss_pred EECCCCC
Confidence 8899888
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0032 Score=75.37 Aligned_cols=116 Identities=17% Similarity=0.187 Sum_probs=84.7
Q ss_pred CCCeEEEEEecCCCcEEEEE----ECCCeE----EEEECCCCce--EEE-eeCCCCCeEEEEEcCCCCEEEEEEcCCeEE
Q 001472 15 SANVNCISIGKKACRFLITG----GDDQKV----NLWAIGKPTA--LMS-LCGLSSPVDSVAFDSAEVLVLAGASTGVIK 83 (1072)
Q Consensus 15 sg~Vt~IafSPdg~~lLaTG----s~DGtV----~IWDl~t~~~--l~s-l~~hs~~ItsLafSPdG~~LatGS~DGsI~ 83 (1072)
.....++.|+...++.+.+. +.+|.+ .+|++...+. +.. -......+.+++++|+...|+.|+.||.|.
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 45567788887655555544 334543 4677754432 111 124678899999999999999999999999
Q ss_pred EEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001472 84 LWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK 132 (1072)
Q Consensus 84 IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtg 132 (1072)
+||...+... +....-....++|||+|..|++|+..|.+.+||+.-.
T Consensus 285 LyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9998766332 2234455788999999999999999999999998643
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.022 Score=62.92 Aligned_cols=222 Identities=13% Similarity=0.138 Sum_probs=131.4
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEE-------------
Q 001472 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRT------------- 95 (1072)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~t------------- 95 (1072)
..|+.|..+| +.+|++........+. +...|..+...++-+.|++-+ ||.++++++..-.....
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~ 84 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLP 84 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccccc
Confidence 6789999998 8999983333333332 233399999999877777765 59999999875433221
Q ss_pred -EeCCCCCeEEEE---EcCCCCEEEEEeCCCeEEEEECCCC-----eEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeE
Q 001472 96 -LTGHKSNCTAVE---FHPFGEFFASGCMDTNLKIWDIRKK-----GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVV 166 (1072)
Q Consensus 96 -l~~h~~~VtsLa---fSPdg~~LaSgs~DGsI~IWDlrtg-----k~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI 166 (1072)
.......+..++ -...+.+|+++ ....|.+|.+... .....+. -...+..++|. ++.|+.|..+ ..
T Consensus 85 ~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~-~f 159 (275)
T PF00780_consen 85 TKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK-GF 159 (275)
T ss_pred ccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-ce
Confidence 011223344444 12223345554 4558888877542 3455555 34678999998 5577777754 47
Q ss_pred EEEECCCCceEEEeeecC------------CceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEE--eeCCCCCCeEEE
Q 001472 167 KVWDLTAGKLLHDFKFHE------------GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIG--STRPEVTGVHAI 232 (1072)
Q Consensus 167 ~IWDl~tgk~i~~~~~h~------------g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~--~~~~h~~~VtsI 232 (1072)
.+.|+.++.....+.... .++..+.+ +++.+|++. |..-.+.|. .|+... .+.- ...+.++
T Consensus 160 ~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W-~~~p~~~ 234 (275)
T PF00780_consen 160 YLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQW-SSAPQSV 234 (275)
T ss_pred EEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEEc-CCchhEE
Confidence 889998776544432111 12333333 345555542 333344443 343322 1211 1234556
Q ss_pred EEeCCCCEEEEEECCcEEEEEecCCeeeccccc
Q 001472 233 TFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDM 265 (1072)
Q Consensus 233 afSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~ 265 (1072)
++. ..||++-.++.|.||++.++.....+..
T Consensus 235 ~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 235 AYS--SPYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEE--CCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 653 4588888888899999999887766654
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.022 Score=69.67 Aligned_cols=239 Identities=15% Similarity=0.156 Sum_probs=142.3
Q ss_pred EEEEEECCCeEEEEECCCCceEEEeeCCCCC-eEEEEEcC--CCCEEEEEEc------CCeEEEEEcCCCeeEEEEeCCC
Q 001472 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSP-VDSVAFDS--AEVLVLAGAS------TGVIKLWDLEESKMVRTLTGHK 100 (1072)
Q Consensus 30 lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~-ItsLafSP--dG~~LatGS~------DGsI~IWDl~tgk~i~tl~~h~ 100 (1072)
.++.++.|+.|.-.|..+++.+......... -..+.-+| .+..++++.. +|.|..+|.++|+.+..+..-.
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p 201 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVP 201 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcC
Confidence 4677888999999999999988776432110 00111112 1334555542 6899999999999887654211
Q ss_pred C-------------------------------Ce-EEEEEcCCCCEEEEEeCC-----C-----------eEEEEECCCC
Q 001472 101 S-------------------------------NC-TAVEFHPFGEFFASGCMD-----T-----------NLKIWDIRKK 132 (1072)
Q Consensus 101 ~-------------------------------~V-tsLafSPdg~~LaSgs~D-----G-----------sI~IWDlrtg 132 (1072)
. .+ ..+.+.+...+++.+..+ + .|.-.|+++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG 281 (527)
T TIGR03075 202 GDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTG 281 (527)
T ss_pred CCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccC
Confidence 1 01 123566656666665422 2 6888899999
Q ss_pred eEEEEEecCCCCeE---------EEEEcCCCC---EEEEEecCCeEEEEECCCCceEEEeee------------cCC-ce
Q 001472 133 GCIHTYKGHTRGIN---------TIRFTPDGR---WVVSGGFDNVVKVWDLTAGKLLHDFKF------------HEG-HI 187 (1072)
Q Consensus 133 k~v~~l~~h~~~Vt---------sLafSPDG~---~LaTGS~DGsI~IWDl~tgk~i~~~~~------------h~g-~I 187 (1072)
+....++.....++ -+.+..+|+ .++.+..+|.++++|-.+|+.+...+. ..+ ++
T Consensus 282 ~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~ 361 (527)
T TIGR03075 282 KIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPI 361 (527)
T ss_pred CEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCc
Confidence 99888775333222 222324666 777899999999999999987622100 000 00
Q ss_pred ----------------------------EEEEEcCCCcEEEEEECC---------------------------------C
Q 001472 188 ----------------------------RSIDFHPLEFLLATGSAD---------------------------------R 206 (1072)
Q Consensus 188 ----------------------------tsLafSPdg~lLaTgS~D---------------------------------G 206 (1072)
..++++|+..+++....+ |
T Consensus 362 ~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g 441 (527)
T TIGR03075 362 EVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMG 441 (527)
T ss_pred cChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCce
Confidence 124566655555443322 4
Q ss_pred eEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEE-CCcEEEEEecCCeeecccccCCCe
Q 001472 207 TVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWST 269 (1072)
Q Consensus 207 tIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGs-dg~I~Vwd~~s~~~~~~l~~~~s~ 269 (1072)
.|.-||+.+++.............+.... .|.+++.+. ++.++.||.++++.+-.+..+...
T Consensus 442 ~l~AiD~~tGk~~W~~~~~~p~~~~~l~t-~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~ 504 (527)
T TIGR03075 442 SLIAWDPITGKIVWEHKEDFPLWGGVLAT-AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGI 504 (527)
T ss_pred eEEEEeCCCCceeeEecCCCCCCCcceEE-CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCc
Confidence 57778888888777654332222222222 344555554 677899999888877666655433
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.022 Score=67.51 Aligned_cols=234 Identities=13% Similarity=0.089 Sum_probs=127.4
Q ss_pred ccCceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEe-------eCCCCCeEEEEEcCCCCEEEE
Q 001472 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSL-------CGLSSPVDSVAFDSAEVLVLA 75 (1072)
Q Consensus 3 ktGk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl-------~~hs~~ItsLafSPdG~~Lat 75 (1072)
..|+++..+.--.+.|.++.|..+. .|++-..||.+++||+.... ...+ ......+.+..+..+|-.++
T Consensus 68 ~sG~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL- 143 (410)
T PF04841_consen 68 SSGKLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVL- 143 (410)
T ss_pred CCCCEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCCEEEE-
Confidence 3577787766555899999998865 46677789999999985332 1111 11112223334444663333
Q ss_pred EEcCCeEEEEEcCCCe-eEEEEe---CCCC------CeEE-EEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 001472 76 GASTGVIKLWDLEESK-MVRTLT---GHKS------NCTA-VEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRG 144 (1072)
Q Consensus 76 GS~DGsI~IWDl~tgk-~i~tl~---~h~~------~Vts-LafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~ 144 (1072)
..++.+.+..-.... ..+.+. .... .+.. ..++.+....+....++.+.+.+-...+. +. ..++
T Consensus 144 -t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~ 218 (410)
T PF04841_consen 144 -TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGP 218 (410)
T ss_pred -CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCC
Confidence 344555544322211 111111 0000 0000 22333444444444555555444222111 22 2357
Q ss_pred eEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeec-CCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeC
Q 001472 145 INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH-EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR 223 (1072)
Q Consensus 145 VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h-~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~ 223 (1072)
+..+++||+|+++|.-..+|.+.++...-.+...++... ......+.|.-+...++.- ...|.++....
T Consensus 219 i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~-------- 288 (410)
T PF04841_consen 219 IIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPDG-------- 288 (410)
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECCCC--------
Confidence 999999999999999999999999987766777776644 3456677786554333222 23444443211
Q ss_pred CCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCCeeec
Q 001472 224 PEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHD 261 (1072)
Q Consensus 224 ~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~ 261 (1072)
..+.|.-++..++..--++++|+.-+......
T Consensus 289 ------~~~~~~~~~~~~l~~E~DG~riit~~~~~~l~ 320 (410)
T PF04841_consen 289 ------DSISFWYDGPVILVSEIDGVRIITSTSHEFLQ 320 (410)
T ss_pred ------CceEEeccCceEEeccCCceEEEeCCceEEEE
Confidence 12344445555566666677887655544433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.017 Score=65.94 Aligned_cols=218 Identities=16% Similarity=0.105 Sum_probs=137.6
Q ss_pred EEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeC--
Q 001472 21 ISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG-- 98 (1072)
Q Consensus 21 IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~-- 98 (1072)
-.|.++.+.++++--..+.|.-|+..++... .+. +...+.++..-..+..|+++. .-+.+++.+.+..+..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence 3577777566777777888989988755432 222 222334444433444444443 3377777766655333321
Q ss_pred ---CCCCeEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecC-
Q 001472 99 ---HKSNCTAVEFHPFGEFFASGCM-----------DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD- 163 (1072)
Q Consensus 99 ---h~~~VtsLafSPdg~~LaSgs~-----------DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~D- 163 (1072)
.......+...|+|.+.+.... -|.|+.+|. .+..+..+..+-..-+.|+||||++.|+.+...
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 1234567888999986665433 144555554 466666666555567899999999888777654
Q ss_pred CeEEEEECCC--Cc-----eEEEeeecCCceEEEEEcCCCcEEEEEECCC-eEEEEECCCCcEEEeeCCCCCCeEEEEEe
Q 001472 164 NVVKVWDLTA--GK-----LLHDFKFHEGHIRSIDFHPLEFLLATGSADR-TVKFWDLETFELIGSTRPEVTGVHAITFH 235 (1072)
Q Consensus 164 GsI~IWDl~t--gk-----~i~~~~~h~g~ItsLafSPdg~lLaTgS~DG-tIrIWDl~tge~i~~~~~h~~~VtsIafS 235 (1072)
+.|.-|++.. +. ....+....+..-.++...+|++.+++..+| .|.+|+.. ++.+..+......+.+++|-
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence 7888887752 21 1222223456667788888898886665554 89999998 89988888777778888886
Q ss_pred C-CCCEEEEE
Q 001472 236 P-DGRTLFSG 244 (1072)
Q Consensus 236 P-DG~~LasG 244 (1072)
- +.+.|++.
T Consensus 264 G~~~~~L~iT 273 (307)
T COG3386 264 GPDLNTLYIT 273 (307)
T ss_pred CCCcCEEEEE
Confidence 4 44555543
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.44 Score=54.44 Aligned_cols=268 Identities=12% Similarity=0.070 Sum_probs=129.8
Q ss_pred CCCCeEEEEEecCCCcEEEEEECCCeEEEEEC-CCCceEEEeeC--C---CCCeEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001472 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAI-GKPTALMSLCG--L---SSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87 (1072)
Q Consensus 14 Hsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl-~t~~~l~sl~~--h---s~~ItsLafSPdG~~LatGS~DGsI~IWDl 87 (1072)
-...+..|.|..+. +-+++| ..|.| +.. +.++.-..... . .....++.|..+ ..+++ +..| +.+...
T Consensus 15 t~~~l~dV~F~d~~-~G~~VG-~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g-~ll~T~ 87 (302)
T PF14870_consen 15 TDKPLLDVAFVDPN-HGWAVG-AYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPG-LLLHTT 87 (302)
T ss_dssp -SS-EEEEEESSSS--EEEEE-TTTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETT-EEEEES
T ss_pred CCCceEEEEEecCC-EEEEEe-cCCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCc-eEEEec
Confidence 34588999998544 445554 45544 333 23332222111 1 123567777643 33444 4455 444444
Q ss_pred CCCeeEEEEe---CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE-EEEEecCCCCeEEEEEcCCCCEEEEEecC
Q 001472 88 EESKMVRTLT---GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC-IHTYKGHTRGINTIRFTPDGRWVVSGGFD 163 (1072)
Q Consensus 88 ~tgk~i~tl~---~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~-v~~l~~h~~~VtsLafSPDG~~LaTGS~D 163 (1072)
+.|+.-..+. ........+....++..++ ++..|.|+.=. +.|+. ........+.+..+.-++||.+++++...
T Consensus 88 DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 88 DGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp STTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 4454333322 1223334444444443333 34556544332 33332 22233445678889999999999888776
Q ss_pred CeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEE-CCCCcEEEe----eCCCCCCeEEEEEeCCC
Q 001472 164 NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWD-LETFELIGS----TRPEVTGVHAITFHPDG 238 (1072)
Q Consensus 164 GsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWD-l~tge~i~~----~~~h~~~VtsIafSPDG 238 (1072)
..+.-||.-...-...-......|..+.|.|++.+.+++ ..|.|++=+ ....+.... +....-.+..++|.+++
T Consensus 166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC
Confidence 667788854322222222346779999999998876654 788898887 222222222 22233458999999999
Q ss_pred CEEEEEECCcEEEEEecCCeeeccc----ccCCCeeeeEEecCCCEEEEEEcCCeEEEE
Q 001472 239 RTLFSGFDDNLKVYSWEPVICHDSV----DMGWSTLGDLCINDGKLLGCSFYRNSVGIW 293 (1072)
Q Consensus 239 ~~LasGsdg~I~Vwd~~s~~~~~~l----~~~~s~i~~l~spDGk~LAsgs~DGsVrIW 293 (1072)
...++|..+.+ +++.+.++.-... ..........|..+.+-++.| .+|.|.-|
T Consensus 245 ~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 245 EIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp -EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 99998888764 5566555433222 223344556666666666666 78877655
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.061 Score=59.94 Aligned_cols=230 Identities=13% Similarity=0.112 Sum_probs=139.7
Q ss_pred eEEEEEcCCC-CEEEEEEcCCe-EEEEEcCCCeeEEEEeCCCCC--eEEEEEcCCCCEEEEEeCC-----CeEEEEECCC
Q 001472 61 VDSVAFDSAE-VLVLAGASTGV-IKLWDLEESKMVRTLTGHKSN--CTAVEFHPFGEFFASGCMD-----TNLKIWDIRK 131 (1072)
Q Consensus 61 ItsLafSPdG-~~LatGS~DGs-I~IWDl~tgk~i~tl~~h~~~--VtsLafSPdg~~LaSgs~D-----GsI~IWDlrt 131 (1072)
...++|+|.. .-++.+-.-|+ ..++|..+.+....+....+. .-.-.|+|||.+|+..-.| |.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 3467888854 44555555554 568898887766555432221 1234799999999887544 7899999875
Q ss_pred C-eEEEEEecCCCCeEEEEEcCCCCEEEEEec------------------CCeEEEEECCCCceEEEee----ecCCceE
Q 001472 132 K-GCIHTYKGHTRGINTIRFTPDGRWVVSGGF------------------DNVVKVWDLTAGKLLHDFK----FHEGHIR 188 (1072)
Q Consensus 132 g-k~v~~l~~h~~~VtsLafSPDG~~LaTGS~------------------DGsI~IWDl~tgk~i~~~~----~h~g~It 188 (1072)
+ ..+..+..|.-....+.|.+||+.++.+.. .-.+.+.|..+|.++.+.. .+.-.|.
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 4 356777888888899999999998887642 1135555656666554332 2345688
Q ss_pred EEEEcCCCcEEEEEECCCe-----EEEEECCCCcEEEeeCCC-------CCCeEEEEEeCCCCEEEEEE--CCcEEEEEe
Q 001472 189 SIDFHPLEFLLATGSADRT-----VKFWDLETFELIGSTRPE-------VTGVHAITFHPDGRTLFSGF--DDNLKVYSW 254 (1072)
Q Consensus 189 sLafSPdg~lLaTgS~DGt-----IrIWDl~tge~i~~~~~h-------~~~VtsIafSPDG~~LasGs--dg~I~Vwd~ 254 (1072)
.++..+||..++-+-..|. -.+=-...++.+.-+... ...|-+|+.+.+..+++..+ .+...+||.
T Consensus 230 Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da 309 (366)
T COG3490 230 HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDA 309 (366)
T ss_pred eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEc
Confidence 8888888887765543331 111111233333332221 23477888887666666653 344789999
Q ss_pred cCCeeecccccCCCeeeeEEecCCCEEEEEEcCCeEEEE
Q 001472 255 EPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIW 293 (1072)
Q Consensus 255 ~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrIW 293 (1072)
.++......... ....+. ....-|++++.+|.+.++
T Consensus 310 ~tG~vv~~a~l~--daaGva-~~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 310 ATGAVVSEAALP--DAAGVA-AAKGGFAVSSGQGRIIFY 345 (366)
T ss_pred CCCcEEeccccc--ccccce-eccCceEEecCCceEEec
Confidence 888765543321 111112 223335556678888877
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.045 Score=62.34 Aligned_cols=172 Identities=14% Similarity=0.165 Sum_probs=105.3
Q ss_pred CeEEEEECCCCceEEEeeCC-CCCeEEE---EEcCC----CCEEEEEEc---------C-CeEEEEEcCCC----eeEEE
Q 001472 38 QKVNLWAIGKPTALMSLCGL-SSPVDSV---AFDSA----EVLVLAGAS---------T-GVIKLWDLEES----KMVRT 95 (1072)
Q Consensus 38 GtV~IWDl~t~~~l~sl~~h-s~~ItsL---afSPd----G~~LatGS~---------D-GsI~IWDl~tg----k~i~t 95 (1072)
+.|+|.|..+.+.+..+.-. ...+.++ .|..+ ..+|++|+. . |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35777887777666554322 2233333 33332 467787764 2 89999999884 12221
Q ss_pred E--eCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EEEEEe-cCCCCeEEEEEcCCCCEEEEEecCCeEEEEEC
Q 001472 96 L--TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG-CIHTYK-GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171 (1072)
Q Consensus 96 l--~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk-~v~~l~-~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl 171 (1072)
+ ....++|++++-. +.+|+++. .+.|++|++...+ ....-. .....+.++... ++++++|+....+.++..
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 1 2357889888876 44455553 5889999998777 433322 123356666655 559999998888887744
Q ss_pred CC-CceEEEee--ecCCceEEEEEcCCCcEEEEEECCCeEEEEECC
Q 001472 172 TA-GKLLHDFK--FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLE 214 (1072)
Q Consensus 172 ~t-gk~i~~~~--~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~ 214 (1072)
.. +..+..+. .....++++.|-++++.++++..+|.|.++...
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 33 33232332 234558888888666799999999999999876
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.012 Score=74.27 Aligned_cols=131 Identities=18% Similarity=0.193 Sum_probs=95.5
Q ss_pred cCCeEEEEEcCCCeeEEEEeCCCCC-eEEEEEcCC-------CCEEEEEeCCCeEEEEECCCCe--EEE----EEecCCC
Q 001472 78 STGVIKLWDLEESKMVRTLTGHKSN-CTAVEFHPF-------GEFFASGCMDTNLKIWDIRKKG--CIH----TYKGHTR 143 (1072)
Q Consensus 78 ~DGsI~IWDl~tgk~i~tl~~h~~~-VtsLafSPd-------g~~LaSgs~DGsI~IWDlrtgk--~v~----~l~~h~~ 143 (1072)
....|+-.|++.|+.+..+..+... |.. |.|+ ...-+.|-.+..|..||.+-.. ++. .+ ....
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~ 578 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKN 578 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCC
Confidence 4578999999999999999977654 444 4443 2345666678889999998542 221 12 1334
Q ss_pred CeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEEC
Q 001472 144 GINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213 (1072)
Q Consensus 144 ~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl 213 (1072)
...|++-+.+| +||+|+.+|.|++||--.......+.+...+|.+|..+.||++|++.+ +..|.+++.
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 57888888777 599999999999999433233344556678999999999999988665 468888886
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.077 Score=60.70 Aligned_cols=217 Identities=13% Similarity=0.032 Sum_probs=128.9
Q ss_pred EEEEcCCCCEEEE-EEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-
Q 001472 63 SVAFDSAEVLVLA-GASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG- 140 (1072)
Q Consensus 63 sLafSPdG~~Lat-GS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~- 140 (1072)
+..|.++...|+. --..+.|+-|+..+++... +. +.+.+.++..-..+..|+++ .. .+++++.+.+..+..+..
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~-~~-g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIAC-EH-GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEE-cc-ccEEEeccCCceeEEeccc
Confidence 3457777764444 4456789999987665322 22 23334555544445555554 33 377778766665333321
Q ss_pred ----CCCCeEEEEEcCCCCEEEEEec-----------CCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEEC-
Q 001472 141 ----HTRGINTIRFTPDGRWVVSGGF-----------DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA- 204 (1072)
Q Consensus 141 ----h~~~VtsLafSPDG~~LaTGS~-----------DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~- 204 (1072)
.....+.+...|+|.+.++... -|.|+.+|. .+..+..+..+-..-+.|+|+||++.|+.+..
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 1234567888999986554333 134666664 46666666555556688999999988877765
Q ss_pred CCeEEEEECCC--Cc-----EEEeeCCCCCCeEEEEEeCCCCEEEEEECC--cEEEEEecCCeeecccccC-CCeeeeEE
Q 001472 205 DRTVKFWDLET--FE-----LIGSTRPEVTGVHAITFHPDGRTLFSGFDD--NLKVYSWEPVICHDSVDMG-WSTLGDLC 274 (1072)
Q Consensus 205 DGtIrIWDl~t--ge-----~i~~~~~h~~~VtsIafSPDG~~LasGsdg--~I~Vwd~~s~~~~~~l~~~-~s~i~~l~ 274 (1072)
.+.|+-|++.. +. ....+....+..-.++...+|.+.+++..+ .|.+|+-+ +.....+... ..+.++.|
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 47888888762 11 122222344667788889999988654333 68888888 6666655555 33333333
Q ss_pred e-cCCCEEEEEE
Q 001472 275 I-NDGKLLGCSF 285 (1072)
Q Consensus 275 s-pDGk~LAsgs 285 (1072)
- ++.+.|++.+
T Consensus 263 gG~~~~~L~iTs 274 (307)
T COG3386 263 GGPDLNTLYITS 274 (307)
T ss_pred eCCCcCEEEEEe
Confidence 2 5555554443
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00011 Score=87.50 Aligned_cols=195 Identities=19% Similarity=0.304 Sum_probs=126.3
Q ss_pred CCCeEEEEEcCCC--CEEEEEEcCCeEEEEEcCCCee--EEEEeCCCCCeEEEEEcC-CCCEEEEEe----CCCeEEEEE
Q 001472 58 SSPVDSVAFDSAE--VLVLAGASTGVIKLWDLEESKM--VRTLTGHKSNCTAVEFHP-FGEFFASGC----MDTNLKIWD 128 (1072)
Q Consensus 58 s~~ItsLafSPdG--~~LatGS~DGsI~IWDl~tgk~--i~tl~~h~~~VtsLafSP-dg~~LaSgs----~DGsI~IWD 128 (1072)
...+.|++++-+. -.+++|..+|.|.+-.+....- .....++...+++++|++ |.++||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4456778776543 4788899999999988764322 233456778899999998 456777763 356799999
Q ss_pred CCCC--eEE--EEEec-CCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCc-eEEEeeecCCceEEEEEcC-CCcEEEE
Q 001472 129 IRKK--GCI--HTYKG-HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK-LLHDFKFHEGHIRSIDFHP-LEFLLAT 201 (1072)
Q Consensus 129 lrtg--k~v--~~l~~-h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk-~i~~~~~h~g~ItsLafSP-dg~lLaT 201 (1072)
+.++ .+. ..+.+ ......+++|..+.+++++|.....++++|++... ....+ ....+..+...| .+++++.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceec
Confidence 9876 221 22222 33456789999999999999999999999998432 12222 233456677888 5677765
Q ss_pred EECCCeEEEEE-CCCCcEEE-eeC----CCCCCeEEEEEeCCCCEE-EEEEC--CcEEEEEec
Q 001472 202 GSADRTVKFWD-LETFELIG-STR----PEVTGVHAITFHPDGRTL-FSGFD--DNLKVYSWE 255 (1072)
Q Consensus 202 gS~DGtIrIWD-l~tge~i~-~~~----~h~~~VtsIafSPDG~~L-asGsd--g~I~Vwd~~ 255 (1072)
- .||.|.+|| ..+.+... .+. .....+..++|+|...-+ ++... +.|++|++.
T Consensus 214 ~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 214 N-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 4 499999999 44433221 111 112348899999964333 33333 346666653
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.20 E-value=1.3 Score=56.47 Aligned_cols=307 Identities=13% Similarity=0.119 Sum_probs=160.2
Q ss_pred CCCeEEEEEecC--CCc---EEEEEECCCeEEEEE-CCCCceEEEe--e--CCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001472 15 SANVNCISIGKK--ACR---FLITGGDDQKVNLWA-IGKPTALMSL--C--GLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1072)
Q Consensus 15 sg~Vt~IafSPd--g~~---lLaTGs~DGtV~IWD-l~t~~~l~sl--~--~hs~~ItsLafSPdG~~LatGS~DGsI~I 84 (1072)
...|.|+.++|- +.+ ++++|.++..+.+.- +.+...+... . .....|.-..|-.+..+|+++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 468999999976 334 899998877665543 3333332222 1 12334555666667889999999998876
Q ss_pred EEc--CCCeeEEEE--eCCCCCeEEEEEcCCCCEEEEEeCC---------------------------------------
Q 001472 85 WDL--EESKMVRTL--TGHKSNCTAVEFHPFGEFFASGCMD--------------------------------------- 121 (1072)
Q Consensus 85 WDl--~tgk~i~tl--~~h~~~VtsLafSPdg~~LaSgs~D--------------------------------------- 121 (1072)
|-+ .+|.....- .-...++.--.|+..++.-+.++.|
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~ 689 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLAS 689 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEE
Confidence 644 444321111 1112222222332222211111112
Q ss_pred ---CeEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEecC--------------CeEEEEECCCCceEEEeee
Q 001472 122 ---TNLKIWDIRKKG--CIHTYKGHTRGINTIRFTPDGRWVVSGGFD--------------NVVKVWDLTAGKLLHDFKF 182 (1072)
Q Consensus 122 ---GsI~IWDlrtgk--~v~~l~~h~~~VtsLafSPDG~~LaTGS~D--------------GsI~IWDl~tgk~i~~~~~ 182 (1072)
+.+.+.-+..-+ .++++. -......+++.+....+.+.+.- ..++++|-.+.+.+...+.
T Consensus 690 ~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef 768 (1096)
T KOG1897|consen 690 ANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEF 768 (1096)
T ss_pred ecCCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccc
Confidence 223333222111 112222 22345677777644444443311 1477777777666544432
Q ss_pred cC----CceEEEEEcCC-CcEEEEEEC----------CCeEEEEECCCCcEEEeeCCC--CCCeEEEEEeCCCCEEEEEE
Q 001472 183 HE----GHIRSIDFHPL-EFLLATGSA----------DRTVKFWDLETFELIGSTRPE--VTGVHAITFHPDGRTLFSGF 245 (1072)
Q Consensus 183 h~----g~ItsLafSPd-g~lLaTgS~----------DGtIrIWDl~tge~i~~~~~h--~~~VtsIafSPDG~~LasGs 245 (1072)
.. -.|.++.|..| +.++++|.. .|.|.+|.+..+..+.....+ .+.+.++..- +|+ +++|-
T Consensus 769 ~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngk-llA~I 846 (1096)
T KOG1897|consen 769 ERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGK-LLAGI 846 (1096)
T ss_pred cccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCe-EEEec
Confidence 11 22455568877 677777752 477888877663333332222 2333333321 344 55566
Q ss_pred CCcEEEEEecCCeeeccc-ccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCC
Q 001472 246 DDNLKVYSWEPVICHDSV-DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPG 324 (1072)
Q Consensus 246 dg~I~Vwd~~s~~~~~~l-~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDG 324 (1072)
+..+++|+|...+....- ............-.|..+++|.--+.+.+......+.....+.. +.+....+.+.+--+.
T Consensus 847 n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr-D~~p~Wmtaveil~~d 925 (1096)
T KOG1897|consen 847 NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR-DYNPNWMTAVEILDDD 925 (1096)
T ss_pred CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh-hhCccceeeEEEecCc
Confidence 678999999987443332 33334444444568889999987787777655444422222222 4455566666655543
Q ss_pred C
Q 001472 325 S 325 (1072)
Q Consensus 325 s 325 (1072)
.
T Consensus 926 ~ 926 (1096)
T KOG1897|consen 926 T 926 (1096)
T ss_pred e
Confidence 3
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.022 Score=70.41 Aligned_cols=202 Identities=13% Similarity=0.037 Sum_probs=110.4
Q ss_pred CCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEE------cCC--eEEEEEcCCCeeEEEEeCCCCCeEEEEE
Q 001472 37 DQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGA------STG--VIKLWDLEESKMVRTLTGHKSNCTAVEF 108 (1072)
Q Consensus 37 DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS------~DG--sI~IWDl~tgk~i~tl~~h~~~VtsLaf 108 (1072)
+|.+.-.+-.....+.-..+....+...+++|+|+.++... .|+ .|++++. .+.. ..+.. ........|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceE
Confidence 66665443222222222223334678899999999887765 233 5666665 2333 33322 224788999
Q ss_pred cCCCCEEEEEeCC------------CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEE---EECCC
Q 001472 109 HPFGEFFASGCMD------------TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKV---WDLTA 173 (1072)
Q Consensus 109 SPdg~~LaSgs~D------------GsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~I---WDl~t 173 (1072)
+|+|+.|++.... +.+++.++..+.... .....|..+.|+|||..++... +|.|++ -....
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 9998877776432 233333443333222 2345799999999999888766 577777 44444
Q ss_pred Cce-E---EEeee-cCCceEEEEEcCCCcEEEEEECCCeEEEEECCC-CcEEEeeCC--CCCCeEEEEEeCCCCEEEEEE
Q 001472 174 GKL-L---HDFKF-HEGHIRSIDFHPLEFLLATGSADRTVKFWDLET-FELIGSTRP--EVTGVHAITFHPDGRTLFSGF 245 (1072)
Q Consensus 174 gk~-i---~~~~~-h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~t-ge~i~~~~~--h~~~VtsIafSPDG~~LasGs 245 (1072)
|.. + ..+.. ....+.++.|..++.++ ++..++.-.+|.+.- |.....+.. ...++..++-+++ .++++.
T Consensus 481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~ 557 (591)
T PRK13616 481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTD 557 (591)
T ss_pred CceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEc
Confidence 541 1 11222 22336889999998855 555555444454332 222111122 2445666666652 344444
Q ss_pred CCc
Q 001472 246 DDN 248 (1072)
Q Consensus 246 dg~ 248 (1072)
.++
T Consensus 558 ~~g 560 (591)
T PRK13616 558 ARA 560 (591)
T ss_pred CCc
Confidence 444
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.045 Score=62.31 Aligned_cols=179 Identities=15% Similarity=0.229 Sum_probs=108.4
Q ss_pred CcEEEEEEC----------CCeEEEEECCCC----ceEEEe--eCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe
Q 001472 28 CRFLITGGD----------DQKVNLWAIGKP----TALMSL--CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK 91 (1072)
Q Consensus 28 ~~lLaTGs~----------DGtV~IWDl~t~----~~l~sl--~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk 91 (1072)
..+|++|.. .|.|.++++... ..+..+ ....++|++++-. +| +|+++. ++.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence 468887754 289999999773 222222 3457889888766 34 455544 5889999998877
Q ss_pred -eEEEEe-CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEEe--cCCCCeEEEEEcCCCCEEEEEecCCeE
Q 001472 92 -MVRTLT-GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK-KGCIHTYK--GHTRGINTIRFTPDGRWVVSGGFDNVV 166 (1072)
Q Consensus 92 -~i~tl~-~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrt-gk~v~~l~--~h~~~VtsLafSPDG~~LaTGS~DGsI 166 (1072)
....-. .....+.++... ++++++|+....+.++.++. ...+..+. .....+.++.|..+++.++.++.+|.|
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl 196 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL 196 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence 433322 123355555555 77999999888888775543 33233332 234558888898776789999999999
Q ss_pred EEEECCC-------C--ceEEEeeec-CCceEEE---EEcC--CC------cEEEEEECCCeEEEE
Q 001472 167 KVWDLTA-------G--KLLHDFKFH-EGHIRSI---DFHP--LE------FLLATGSADRTVKFW 211 (1072)
Q Consensus 167 ~IWDl~t-------g--k~i~~~~~h-~g~ItsL---afSP--dg------~lLaTgS~DGtIrIW 211 (1072)
.++.... + +.......| ...|+++ ++.| .+ ..++.++.+|.|.+.
T Consensus 197 ~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 197 FVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 9987752 2 222222223 3446666 5555 12 247778889988743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.046 Score=67.69 Aligned_cols=170 Identities=12% Similarity=0.028 Sum_probs=99.1
Q ss_pred CCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEe------CC--CeEEEEECCCCeEEEEEecCCCCeEEEEE
Q 001472 79 TGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGC------MD--TNLKIWDIRKKGCIHTYKGHTRGINTIRF 150 (1072)
Q Consensus 79 DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs------~D--GsI~IWDlrtgk~v~~l~~h~~~VtsLaf 150 (1072)
+|.+.-.+-..-..+....+....+...+++|+|+.++... .| ..|++++. .+.. ..+.. ........|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceE
Confidence 66665544222222222222334678899999999887765 23 35666675 2333 33322 223788999
Q ss_pred cCCCCEEEEEecC------------CeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEE---EECCC
Q 001472 151 TPDGRWVVSGGFD------------NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF---WDLET 215 (1072)
Q Consensus 151 SPDG~~LaTGS~D------------GsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrI---WDl~t 215 (1072)
+|||.+|++.... +.+.+.++..+.... ...+.|..+.|+|||..|+... +|.|++ -....
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 9999888776532 233333444333322 2356799999999999888766 478877 44444
Q ss_pred CcE-E---EeeCCCC-CCeEEEEEeCCCCEEEEEECCcEEEEEec
Q 001472 216 FEL-I---GSTRPEV-TGVHAITFHPDGRTLFSGFDDNLKVYSWE 255 (1072)
Q Consensus 216 ge~-i---~~~~~h~-~~VtsIafSPDG~~LasGsdg~I~Vwd~~ 255 (1072)
|.. + ..+.... ..+.++.|..++.+++...+....+|.+.
T Consensus 481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVN 525 (591)
T ss_pred CceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEe
Confidence 541 1 1122222 23688999999997655444444455544
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.012 Score=74.14 Aligned_cols=134 Identities=14% Similarity=0.099 Sum_probs=96.1
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCC-eEEEEEcC-----CCCEEEEEecCCeEEEEECCCCc--eEEE-ee--ecCCceE
Q 001472 120 MDTNLKIWDIRKKGCIHTYKGHTRG-INTIRFTP-----DGRWVVSGGFDNVVKVWDLTAGK--LLHD-FK--FHEGHIR 188 (1072)
Q Consensus 120 ~DGsI~IWDlrtgk~v~~l~~h~~~-VtsLafSP-----DG~~LaTGS~DGsI~IWDl~tgk--~i~~-~~--~h~g~It 188 (1072)
....|+-.|+..|+.+..+..+... |..++-.. +....++|-.+..|..||.+-.. ++.. .+ .......
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 4578999999999999999877654 44443221 12234567778899999998642 2211 11 1334577
Q ss_pred EEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCcEEEEEe
Q 001472 189 SIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSW 254 (1072)
Q Consensus 189 sLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~ 254 (1072)
|++-..+| +||+|+.+|.|++||--.......+.+...+|.+|..+.||+||++.++..|.+++.
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 88877766 678899999999999433232333455578999999999999999999999888885
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.97 Score=57.32 Aligned_cols=235 Identities=6% Similarity=-0.028 Sum_probs=118.6
Q ss_pred CeEEEEEecCCCcEEEEE-ECCC----eEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcC------CeEEEE
Q 001472 17 NVNCISIGKKACRFLITG-GDDQ----KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAST------GVIKLW 85 (1072)
Q Consensus 17 ~Vt~IafSPdg~~lLaTG-s~DG----tV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~D------GsI~IW 85 (1072)
.+..+.|+||| ++|+.+ +.+| .|++.|+.++..+........ ..++|.++++.|+....+ ..|+.|
T Consensus 128 ~l~~~~~Spdg-~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDN-TIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCC-CEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 46678899999 455544 3334 478889887754322211111 469999999877666542 368888
Q ss_pred EcCCC--eeEEEEeCCCCCeE-EEEEcCCCCEEEEEeC---CCeEEEEECC--CCeEEEEEecCCCCeEEEEEcCCCCEE
Q 001472 86 DLEES--KMVRTLTGHKSNCT-AVEFHPFGEFFASGCM---DTNLKIWDIR--KKGCIHTYKGHTRGINTIRFTPDGRWV 157 (1072)
Q Consensus 86 Dl~tg--k~i~tl~~h~~~Vt-sLafSPdg~~LaSgs~---DGsI~IWDlr--tgk~v~~l~~h~~~VtsLafSPDG~~L 157 (1072)
++.++ +-...+........ .+..+.++++++..+. ++.+.+|+.. .+.....+.........+. +..+.++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence 98877 33333433333333 2333448887665543 3578888843 3332222322222222222 2233333
Q ss_pred EEEec---CCeEEEEECC-CCceEEEeeecC-CceEEEEEcCCCcEEEEEECCCeEEEE--ECCCCcEEEeeC-CCCCCe
Q 001472 158 VSGGF---DNVVKVWDLT-AGKLLHDFKFHE-GHIRSIDFHPLEFLLATGSADRTVKFW--DLETFELIGSTR-PEVTGV 229 (1072)
Q Consensus 158 aTGS~---DGsI~IWDl~-tgk~i~~~~~h~-g~ItsLafSPdg~lLaTgS~DGtIrIW--Dl~tge~i~~~~-~h~~~V 229 (1072)
+.... ...|...++. .++....+.... ..+..+.+. .+.++++...+|.-+++ +...+ .+..+. .....+
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~~ 361 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAYV 361 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCceE
Confidence 33222 2345555655 232222233212 367788887 34566666667765554 44333 333332 222223
Q ss_pred EEEEEe--CCCCEEE-EEE----CCcEEEEEecCC
Q 001472 230 HAITFH--PDGRTLF-SGF----DDNLKVYSWEPV 257 (1072)
Q Consensus 230 tsIafS--PDG~~La-sGs----dg~I~Vwd~~s~ 257 (1072)
..+.++ +++..++ ..+ -..+..||..+.
T Consensus 362 ~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 362 TWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred eeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 333444 3444333 322 234666666554
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.11 Score=58.00 Aligned_cols=205 Identities=19% Similarity=0.169 Sum_probs=126.4
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCe-EEEEECCCCeEEEEEecCCC--CeEEEEEcCCCCEEEEEecC-----CeEEEEE
Q 001472 100 KSNCTAVEFHPFGE-FFASGCMDTN-LKIWDIRKKGCIHTYKGHTR--GINTIRFTPDGRWVVSGGFD-----NVVKVWD 170 (1072)
Q Consensus 100 ~~~VtsLafSPdg~-~LaSgs~DGs-I~IWDlrtgk~v~~l~~h~~--~VtsLafSPDG~~LaTGS~D-----GsI~IWD 170 (1072)
......|.|+|... -++.+-.-|+ .+++|....+....+....+ ..-.-.|||||.+|+..-.| |.|-|||
T Consensus 67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEe
Confidence 34455688888544 4566655554 67889887776555533221 23345799999988775433 6899999
Q ss_pred CCCC-ceEEEeeecCCceEEEEEcCCCcEEEEEEC------------------CCeEEEEECCCCcEEEeeC----CCCC
Q 001472 171 LTAG-KLLHDFKFHEGHIRSIDFHPLEFLLATGSA------------------DRTVKFWDLETFELIGSTR----PEVT 227 (1072)
Q Consensus 171 l~tg-k~i~~~~~h~g~ItsLafSPdg~lLaTgS~------------------DGtIrIWDl~tge~i~~~~----~h~~ 227 (1072)
.+.+ +.+-++..|.-....+.|.+||..|+.+.. .-.+.+.|..+|+.+.+.. .+..
T Consensus 147 ~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l 226 (366)
T COG3490 147 AREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL 226 (366)
T ss_pred cccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence 9754 456778888877889999999999887642 1134455655666654432 2345
Q ss_pred CeEEEEEeCCCCEEEEEECCc------EEEEEecCCeeecccccCC-------CeeeeEEec--CCCEEEEEEcCCeEEE
Q 001472 228 GVHAITFHPDGRTLFSGFDDN------LKVYSWEPVICHDSVDMGW-------STLGDLCIN--DGKLLGCSFYRNSVGI 292 (1072)
Q Consensus 228 ~VtsIafSPDG~~LasGsdg~------I~Vwd~~s~~~~~~l~~~~-------s~i~~l~sp--DGk~LAsgs~DGsVrI 292 (1072)
.|+.++..+||..++.+.-.+ ..|-....+.....++... ..+..+... ++-..+++-..+...+
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi 306 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI 306 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence 689999999999888763211 1222223333333222221 122222333 4444555556778899
Q ss_pred EEcCCCceeeee
Q 001472 293 WVADVSHVEPYG 304 (1072)
Q Consensus 293 WDlds~~l~~~~ 304 (1072)
||..++.+....
T Consensus 307 ~da~tG~vv~~a 318 (366)
T COG3490 307 WDAATGAVVSEA 318 (366)
T ss_pred EEcCCCcEEecc
Confidence 999988766543
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.86 E-value=1.2 Score=54.23 Aligned_cols=148 Identities=14% Similarity=0.150 Sum_probs=87.6
Q ss_pred CCeEEEEEecCCCcEEEEEE--CCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCC----CEEEEEEcCCeEEEEEcC-
Q 001472 16 ANVNCISIGKKACRFLITGG--DDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE----VLVLAGASTGVIKLWDLE- 88 (1072)
Q Consensus 16 g~Vt~IafSPdg~~lLaTGs--~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG----~~LatGS~DGsI~IWDl~- 88 (1072)
.+|..++|. ||...+++.- .+|.+++=| ... .+.-..|..+.|.|-+ ..|++.-....|.||.+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~v----iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKV----IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccE----eeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 478888886 4545555532 223332211 122 2344568899999842 245555567889999875
Q ss_pred ----CCeeEEEEeCC-CC--C--eEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEEecCCCCeEEEEEcCCCCEE
Q 001472 89 ----ESKMVRTLTGH-KS--N--CTAVEFHPFGEFFASGCMDTNLKIWDIRKK--GCIHTYKGHTRGINTIRFTPDGRWV 157 (1072)
Q Consensus 89 ----tgk~i~tl~~h-~~--~--VtsLafSPdg~~LaSgs~DGsI~IWDlrtg--k~v~~l~~h~~~VtsLafSPDG~~L 157 (1072)
.++.+..-..+ .+ + -..+.|||....|++-.....=.+++++.. .....++ ..+.|.|.+|.+||+.|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEE
Confidence 23332222111 11 1 245789999998887766555456666533 2333343 55679999999999977
Q ss_pred EEEe-cCCeEEEEECC
Q 001472 158 VSGG-FDNVVKVWDLT 172 (1072)
Q Consensus 158 aTGS-~DGsI~IWDl~ 172 (1072)
+++- ..=.-++||-.
T Consensus 171 VVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEeCCeEEEEEecCc
Confidence 6653 33456788854
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.15 Score=57.23 Aligned_cols=196 Identities=14% Similarity=0.183 Sum_probs=129.0
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 001472 55 CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGH-KSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG 133 (1072)
Q Consensus 55 ~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h-~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk 133 (1072)
.+....+.++.|+|+.+.|++......-.||=-..|+.++++.-. -...-.+.|..+|++.++--.++.++++.+..+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 445566999999999999999888888778877788888876521 2334567888778877777778889888776553
Q ss_pred EEEEE----------ecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceE---EEeee-------cCCceEEEEEc
Q 001472 134 CIHTY----------KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLL---HDFKF-------HEGHIRSIDFH 193 (1072)
Q Consensus 134 ~v~~l----------~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i---~~~~~-------h~g~ItsLafS 193 (1072)
.+... ...+.+.-.++|.|....|+.+-+-.-+.||.+..+... ..... .-..+.++.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 22111 122566889999998888888887777777766533211 11111 12346778888
Q ss_pred CC-CcEEEEEECCCeEEEEECCCCcEEEeeCCC---------CCCeEEEEEeCCCCEEEEEECCcEEE
Q 001472 194 PL-EFLLATGSADRTVKFWDLETFELIGSTRPE---------VTGVHAITFHPDGRTLFSGFDDNLKV 251 (1072)
Q Consensus 194 Pd-g~lLaTgS~DGtIrIWDl~tge~i~~~~~h---------~~~VtsIafSPDG~~LasGsdg~I~V 251 (1072)
+. +.+|+.+..++.+.-.|.. |+.+..+..+ ....-.++..++|...+++--+..+.
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPnlfy~ 308 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPNLFYR 308 (316)
T ss_pred CCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCCccee
Confidence 74 6677777777878777765 4433332211 12345678888887777665554333
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.61 Score=52.15 Aligned_cols=182 Identities=13% Similarity=0.112 Sum_probs=118.0
Q ss_pred eEEEEEcCCCCEEEEEEcCC--eEEEEEcCCCeeEEEEeCCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 001472 61 VDSVAFDSAEVLVLAGASTG--VIKLWDLEESKMVRTLTGHK-SNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHT 137 (1072)
Q Consensus 61 ItsLafSPdG~~LatGS~DG--sI~IWDl~tgk~i~tl~~h~-~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~ 137 (1072)
...+.|..+|.++-+.+.-| .|+.+|+.+|+......-.. .---.++.. +++.+...-.++...+||..+.+.+..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 34677877787777777666 79999999998776654322 122334444 233344445679999999999998888
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecC-----CceEEEEEcCCCcEEEEEECCCeEEEEE
Q 001472 138 YKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE-----GHIRSIDFHPLEFLLATGSADRTVKFWD 212 (1072)
Q Consensus 138 l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~-----g~ItsLafSPdg~lLaTgS~DGtIrIWD 212 (1072)
+.- .+.-+.++ .||+.|+.......|.++|..+.+....+.... ..+.-+-|. +|.+.|-.-....|...|
T Consensus 126 ~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id 201 (264)
T PF05096_consen 126 FPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID 201 (264)
T ss_dssp EE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred Eec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence 864 34567777 456777777777899999999888777665332 235556665 677776666677899999
Q ss_pred CCCCcEEEeeCC---------------CCCCeEEEEEeCCCCEEEEEECC
Q 001472 213 LETFELIGSTRP---------------EVTGVHAITFHPDGRTLFSGFDD 247 (1072)
Q Consensus 213 l~tge~i~~~~~---------------h~~~VtsIafSPDG~~LasGsdg 247 (1072)
..+|+....+.. ...-.+.|+|+|.+..|.+.+..
T Consensus 202 p~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 202 PETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp TTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred CCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 999988765411 12347899999987766665443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.66 Score=51.90 Aligned_cols=182 Identities=11% Similarity=0.050 Sum_probs=117.7
Q ss_pred CeEEEEEecCCCcEEEEEECCC--eEEEEECCCCceEEEeeCCCC-CeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeE
Q 001472 17 NVNCISIGKKACRFLITGGDDQ--KVNLWAIGKPTALMSLCGLSS-PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMV 93 (1072)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DG--tV~IWDl~t~~~l~sl~~hs~-~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i 93 (1072)
-...+.|..+| .++-+.|.-| .|+.+|+.+++......-... ---.++... ++.....-.+|...+||..+.+.+
T Consensus 46 FTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEE
Confidence 45678887777 6667777666 688999999987765542221 122344432 333344456799999999999988
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC-----CCCeEEEEEcCCCCEEEEEecCCeEEE
Q 001472 94 RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGH-----TRGINTIRFTPDGRWVVSGGFDNVVKV 168 (1072)
Q Consensus 94 ~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h-----~~~VtsLafSPDG~~LaTGS~DGsI~I 168 (1072)
..+.- ...=+.++ .+++.|+.+.....|+++|..+.+....+.-. -..++-+.|- +|...|=.-....|..
T Consensus 124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence 88864 34556676 46788888888889999999888776665422 1246667776 5665555556778999
Q ss_pred EECCCCceEEEeee---------------cCCceEEEEEcCCCcEEEEEEC
Q 001472 169 WDLTAGKLLHDFKF---------------HEGHIRSIDFHPLEFLLATGSA 204 (1072)
Q Consensus 169 WDl~tgk~i~~~~~---------------h~g~ItsLafSPdg~lLaTgS~ 204 (1072)
.|..+|+.+..+.. ...-...|+|+|....|++.+.
T Consensus 200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 99999998877642 0245789999987666555543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.28 Score=62.63 Aligned_cols=193 Identities=12% Similarity=0.076 Sum_probs=122.6
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCCC--------eEEEEEcC----------------CCCEEEEEEcCCeEEE
Q 001472 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSP--------VDSVAFDS----------------AEVLVLAGASTGVIKL 84 (1072)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~--------ItsLafSP----------------dG~~LatGS~DGsI~I 84 (1072)
..|+.++.++.|.-.|..+++.+..+...... ...+++.. .+..++.++.|+.|.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 36777888899999999999988887532211 12233321 3457888999999999
Q ss_pred EEcCCCeeEEEEeCCCCCeE-------------EEEEcC--CCCEEEEEeC----------CCeEEEEECCCCeEEEEEe
Q 001472 85 WDLEESKMVRTLTGHKSNCT-------------AVEFHP--FGEFFASGCM----------DTNLKIWDIRKKGCIHTYK 139 (1072)
Q Consensus 85 WDl~tgk~i~tl~~h~~~Vt-------------sLafSP--dg~~LaSgs~----------DGsI~IWDlrtgk~v~~l~ 139 (1072)
.|.++|+.+..+.. .+.|. .+.-.| .+..+++|+. +|.|+-+|.++|+.+..+.
T Consensus 275 LDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 275 LDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999999877642 21110 111112 1445666643 6889999999999988775
Q ss_pred cC---------CC--------Ce-EEEEEcCCCCEEEEEe------------------cCCeEEEEECCCCceEEEeeec
Q 001472 140 GH---------TR--------GI-NTIRFTPDGRWVVSGG------------------FDNVVKVWDLTAGKLLHDFKFH 183 (1072)
Q Consensus 140 ~h---------~~--------~V-tsLafSPDG~~LaTGS------------------~DGsI~IWDl~tgk~i~~~~~h 183 (1072)
.. .+ .+ ..+++.+...+++.+. ..+.|.-.|..+|+....++..
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV 433 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence 21 00 01 2234444434333321 2356778899999998887742
Q ss_pred CCceE---------EEEEcC-CCc---EEEEEECCCeEEEEECCCCcEEEee
Q 001472 184 EGHIR---------SIDFHP-LEF---LLATGSADRTVKFWDLETFELIGST 222 (1072)
Q Consensus 184 ~g~It---------sLafSP-dg~---lLaTgS~DGtIrIWDl~tge~i~~~ 222 (1072)
...+. -+.+.- +|+ .++.++.+|.++++|-++|+.+...
T Consensus 434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 21111 112222 453 7888999999999999999987654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.067 Score=65.95 Aligned_cols=212 Identities=10% Similarity=0.062 Sum_probs=103.9
Q ss_pred eEEEEEcCCCeeEE--EEeCCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeEEEE--EecCCCCeEEEEE
Q 001472 81 VIKLWDLEESKMVR--TLTGHKSNCTAVEFHPFGEFFASGCMD------TNLKIWDIRKKGCIHT--YKGHTRGINTIRF 150 (1072)
Q Consensus 81 sI~IWDl~tgk~i~--tl~~h~~~VtsLafSPdg~~LaSgs~D------GsI~IWDlrtgk~v~~--l~~h~~~VtsLaf 150 (1072)
.+..||..+++-.. .+...... .+++. -++..+++||.+ ..+..||..++.-... +....... +++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~- 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA- 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-
Confidence 46778887654221 11111111 12222 256677777753 3477889877642211 11111111 222
Q ss_pred cCCCCEEEEEecCC-----eEEEEECCCCceEE--EeeecCCceEEEEEcCCCcEEEEEECCC-----------------
Q 001472 151 TPDGRWVVSGGFDN-----VVKVWDLTAGKLLH--DFKFHEGHIRSIDFHPLEFLLATGSADR----------------- 206 (1072)
Q Consensus 151 SPDG~~LaTGS~DG-----sI~IWDl~tgk~i~--~~~~h~g~ItsLafSPdg~lLaTgS~DG----------------- 206 (1072)
.-+|++.+.||.++ .+..||..+.+... .+.........+.+ +|.+.+.||.++
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccc
Confidence 22577778888654 47889987764322 11111111112222 577777787652
Q ss_pred ------eEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEEC-C------cEEEEEecC-Ceee--cccccCCCee
Q 001472 207 ------TVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFD-D------NLKVYSWEP-VICH--DSVDMGWSTL 270 (1072)
Q Consensus 207 ------tIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsd-g------~I~Vwd~~s-~~~~--~~l~~~~s~i 270 (1072)
.+..||..+.+....-.-.......-...-+|+..+.|+. + .+..||.+. .... ..+......
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~- 505 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA- 505 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc-
Confidence 4778888765432111111111111122334566565542 1 245677665 3332 222222222
Q ss_pred eeEEecCCCEEEEEEcCC--eEEEEEcCCCc
Q 001472 271 GDLCINDGKLLGCSFYRN--SVGIWVADVSH 299 (1072)
Q Consensus 271 ~~l~spDGk~LAsgs~DG--sVrIWDlds~~ 299 (1072)
..+..-+|++.++|+.+| .+..||..+..
T Consensus 506 ~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 506 LHTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ceeEEECCEEEEEeeecceeehhhcCccccc
Confidence 233345889999999888 66667665443
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0042 Score=44.45 Aligned_cols=39 Identities=23% Similarity=0.589 Sum_probs=35.4
Q ss_pred CceEEEEecCCCCeEEEEEecCCCcEEEEEECCCeEEEEE
Q 001472 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWA 44 (1072)
Q Consensus 5 Gk~I~~L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWD 44 (1072)
+..+..+.+|...|.++.|++++ .++++++.||.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 56778899999999999999988 7899999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0064 Score=73.12 Aligned_cols=94 Identities=16% Similarity=0.288 Sum_probs=80.0
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 001472 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCT-AVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH 136 (1072)
Q Consensus 58 s~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~Vt-sLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~ 136 (1072)
...|.-+.|+|.-..||.+..+|.|.+..+. .+.+.++.-++..++ +++|.|||+.|++|-.||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3557789999999999999999999999987 777888887777777 99999999999999999999999999988776
Q ss_pred EEe-cCCCCeEEEEEcC
Q 001472 137 TYK-GHTRGINTIRFTP 152 (1072)
Q Consensus 137 ~l~-~h~~~VtsLafSP 152 (1072)
... .....|.++-|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 632 2345678888864
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.97 Score=51.71 Aligned_cols=226 Identities=15% Similarity=0.164 Sum_probs=109.6
Q ss_pred eEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEee---CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeE-
Q 001472 18 VNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLC---GLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMV- 93 (1072)
Q Consensus 18 Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~---~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i- 93 (1072)
..+|.|..+ ..+++| ..| +.+...+.++.-..+. ........+....++. ...++..|.|+.= .+.|+.-
T Consensus 64 l~~I~f~~~--~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l~~~~G~iy~T-~DgG~tW~ 137 (302)
T PF14870_consen 64 LNSISFDGN--EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS-AELAGDRGAIYRT-TDGGKTWQ 137 (302)
T ss_dssp EEEEEEETT--EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTE-EEEEETT--EEEE-SSTTSSEE
T ss_pred EEEEEecCC--ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc-EEEEcCCCcEEEe-CCCCCCee
Confidence 556666543 344444 344 3344444454443332 1223334444433443 3333444544322 2233322
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECC-
Q 001472 94 RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT- 172 (1072)
Q Consensus 94 ~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~- 172 (1072)
.......+.+..+..+++|++++++.....+.-||--...-...-......|..+.|.|++.+.++ ...|.|++=+..
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPD 216 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TT
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCC
Confidence 223345577888999999998888755444557774322222222224567999999999876554 488999888722
Q ss_pred CCceEEE----eeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEee---CCCCCCeEEEEEeCCCCEEEEEE
Q 001472 173 AGKLLHD----FKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGST---RPEVTGVHAITFHPDGRTLFSGF 245 (1072)
Q Consensus 173 tgk~i~~----~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~---~~h~~~VtsIafSPDG~~LasGs 245 (1072)
..+.-.. +......+..++|.+++.+.++|+. |.+ +...+.|+..... ......++.|.|..+.+-++.|.
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECC
Confidence 2221111 1112334789999998877776654 543 4455555544433 23345688999988888899998
Q ss_pred CCcEEEE
Q 001472 246 DDNLKVY 252 (1072)
Q Consensus 246 dg~I~Vw 252 (1072)
++.|.-|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 8876544
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.29 Score=56.48 Aligned_cols=103 Identities=19% Similarity=0.282 Sum_probs=57.2
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCee---EEEE----eCCCCCeEEEEEcCC---CCEEEEEeC-C-------
Q 001472 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM---VRTL----TGHKSNCTAVEFHPF---GEFFASGCM-D------- 121 (1072)
Q Consensus 60 ~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~---i~tl----~~h~~~VtsLafSPd---g~~LaSgs~-D------- 121 (1072)
..+.|+|.|+|++|++ ...|.|++++ .++.. +..+ .........++|+|+ ..+|++... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999987665 5699999999 44443 2222 123456799999994 234433322 1
Q ss_pred -CeEEEEECCCC--e-----E-EEEEec---CCCCeEEEEEcCCCCEEEEEecCC
Q 001472 122 -TNLKIWDIRKK--G-----C-IHTYKG---HTRGINTIRFTPDGRWVVSGGFDN 164 (1072)
Q Consensus 122 -GsI~IWDlrtg--k-----~-v~~l~~---h~~~VtsLafSPDG~~LaTGS~DG 164 (1072)
..|.-|....+ . . +..+.. .......|.|.|||.++++.+..+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 23444544333 1 1 112222 234457799999997666665443
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0071 Score=72.74 Aligned_cols=94 Identities=19% Similarity=0.255 Sum_probs=79.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeE-EEEEcCCCCEEEEEecCCeEEEEECCCCceEE
Q 001472 100 KSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGIN-TIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLH 178 (1072)
Q Consensus 100 ~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~Vt-sLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~ 178 (1072)
...+.-+.|+|.-..||.+..+|.|.++.+. .+.++.+..++..+. +++|.|||+.|++|-.||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3457789999999999999999999999987 777888887777777 99999999999999999999999999998877
Q ss_pred Eee-ecCCceEEEEEcC
Q 001472 179 DFK-FHEGHIRSIDFHP 194 (1072)
Q Consensus 179 ~~~-~h~g~ItsLafSP 194 (1072)
.+. .....|.++-|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 632 2345677777763
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=1.7 Score=50.23 Aligned_cols=268 Identities=10% Similarity=0.037 Sum_probs=132.7
Q ss_pred CCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEee----CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 001472 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLC----GLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES 90 (1072)
Q Consensus 15 sg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~----~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tg 90 (1072)
...+.+|.|.... +-+++|. +|.|..= .+.++.-.... .....+.++.|..+ ..+++ +..|.|..- -+.|
T Consensus 45 ~~~l~~v~F~d~~-~g~avG~-~G~il~T-~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~S-~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPN-HGWLVGS-NRTLLET-NDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLHT-TDGG 118 (334)
T ss_pred CCceEEEEEeCCC-cEEEEEC-CCEEEEE-cCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEEE-CCCC
Confidence 4578999998544 5555554 4544321 12222222211 12234677888643 33444 344443321 2223
Q ss_pred eeEEEEe---CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE-ecCCCCeEEEEEcCCCCEEEEEecCCeE
Q 001472 91 KMVRTLT---GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTIRFTPDGRWVVSGGFDNVV 166 (1072)
Q Consensus 91 k~i~tl~---~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l-~~h~~~VtsLafSPDG~~LaTGS~DGsI 166 (1072)
+.-..+. ........+.....+..++ ++..|.|+.=+ +.|+.-..+ ......+.++.+.+++.+++++. .|.+
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~-~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~-~G~i 195 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGPGTAEM-ATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS-RGNF 195 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECCCccee-eeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEeC-CceE
Confidence 2222221 0111222222222233333 34455443322 233322222 12245688999999987666554 5654
Q ss_pred EEE-ECCCCceEEEe-eecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCC----CCCCeEEEEEeCCCCE
Q 001472 167 KVW-DLTAGKLLHDF-KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP----EVTGVHAITFHPDGRT 240 (1072)
Q Consensus 167 ~IW-Dl~tgk~i~~~-~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~----h~~~VtsIafSPDG~~ 240 (1072)
..- | ..++.-... ......+.++.+.+++..++++ ..|.+.+=+.+.+........ ....+..+.|.+++..
T Consensus 196 ~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~ 273 (334)
T PRK13684 196 YSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEI 273 (334)
T ss_pred EEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCE
Confidence 432 2 222222222 2334568899999999877765 457665433444443332221 1235788999999988
Q ss_pred EEEEECCcEEEEEecCCeeecccc----cCCCeeeeEEecCCCEEEEEEcCCeEEEEEc
Q 001472 241 LFSGFDDNLKVYSWEPVICHDSVD----MGWSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1072)
Q Consensus 241 LasGsdg~I~Vwd~~s~~~~~~l~----~~~s~i~~l~spDGk~LAsgs~DGsVrIWDl 295 (1072)
+++|.++.+ ++..+.+....... ........++..+++.+++| ..|.|--|+-
T Consensus 274 ~~~G~~G~v-~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~~~~ 330 (334)
T PRK13684 274 WAGGGNGTL-LVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGVLLRYVG 330 (334)
T ss_pred EEEcCCCeE-EEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCceEEEecC
Confidence 888877654 34444433322221 12234445555666666655 7888877753
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.65 E-value=3.6 Score=52.79 Aligned_cols=328 Identities=12% Similarity=0.101 Sum_probs=171.3
Q ss_pred CeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEE-eeCCCCCeEEEEEcCCC------CEEEEEEcCCeEEEEE-cC
Q 001472 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMS-LCGLSSPVDSVAFDSAE------VLVLAGASTGVIKLWD-LE 88 (1072)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~s-l~~hs~~ItsLafSPdG------~~LatGS~DGsI~IWD-l~ 88 (1072)
.+++.+.+.+. ..++.++.++.+...++..+..... -+.....|.|+.++|-| +++++|..+..+.+.- ..
T Consensus 489 ~~ti~~~~~n~-sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 489 KITIGVVSANA-SQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred ceEEEEEeecc-eEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 34444444444 3556666667777777755542111 23346789999999742 2788888776555443 33
Q ss_pred CCeeEEEE--e--CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeEEEEE--ecCCCCeEEEEEcC--------
Q 001472 89 ESKMVRTL--T--GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR--KKGCIHTY--KGHTRGINTIRFTP-------- 152 (1072)
Q Consensus 89 tgk~i~tl--~--~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlr--tgk~v~~l--~~h~~~VtsLafSP-------- 152 (1072)
+...+... . .-...|...+|--|..+|.++..||.+.-|-+. ++..-..- .-...++.--.|+.
T Consensus 568 d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa 647 (1096)
T KOG1897|consen 568 DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFA 647 (1096)
T ss_pred CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEE
Confidence 33333222 1 112345556666678899999999998776543 33211000 00111121112211
Q ss_pred -----------CCC------------------------EEEEEecCCeEEEEECCCCce--EEEeeecCCceEEEEEcCC
Q 001472 153 -----------DGR------------------------WVVSGGFDNVVKVWDLTAGKL--LHDFKFHEGHIRSIDFHPL 195 (1072)
Q Consensus 153 -----------DG~------------------------~LaTGS~DGsI~IWDl~tgk~--i~~~~~h~g~ItsLafSPd 195 (1072)
+++ .|+++. .+.+.+.-+..-+. ++++. -......+++.+.
T Consensus 648 ~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~ 725 (1096)
T KOG1897|consen 648 LSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQES 725 (1096)
T ss_pred eCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeec-CCCChhheEeccc
Confidence 111 122111 22333333222111 11222 2334566777764
Q ss_pred CcEEEEEECC--------------CeEEEEECCCCcEEEeeCCCC----CCeEEEEEeCC-CCEEEEEE-----------
Q 001472 196 EFLLATGSAD--------------RTVKFWDLETFELIGSTRPEV----TGVHAITFHPD-GRTLFSGF----------- 245 (1072)
Q Consensus 196 g~lLaTgS~D--------------GtIrIWDl~tge~i~~~~~h~----~~VtsIafSPD-G~~LasGs----------- 245 (1072)
...+++.+.. ..++++|-++.+.+....... ..+.++.|..| +.++++|.
T Consensus 726 sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~ 805 (1096)
T KOG1897|consen 726 SLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPV 805 (1096)
T ss_pred ceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcc
Confidence 4444443321 147788888877665443221 13555668888 78888874
Q ss_pred CCcEEEEEecCCeeeccc---ccCCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECC
Q 001472 246 DDNLKVYSWEPVICHDSV---DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNP 322 (1072)
Q Consensus 246 dg~I~Vwd~~s~~~~~~l---~~~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSP 322 (1072)
.|.|.||.+........+ ... ...-.+..-+|+++|.- +..|++|+...++.-... ..+..++..+...-
T Consensus 806 ~GRIivfe~~e~~~L~~v~e~~v~-Gav~aL~~fngkllA~I--n~~vrLye~t~~~eLr~e----~~~~~~~~aL~l~v 878 (1096)
T KOG1897|consen 806 NGRIIVFEFEELNSLELVAETVVK-GAVYALVEFNGKLLAGI--NQSVRLYEWTTERELRIE----CNISNPIIALDLQV 878 (1096)
T ss_pred cceEEEEEEecCCceeeeeeeeec-cceeehhhhCCeEEEec--CcEEEEEEccccceehhh----hcccCCeEEEEEEe
Confidence 245788887762222211 111 11222333578877754 678999988766322222 45667788888888
Q ss_pred CCCccceEEEEEeccCcceEEeecCCcccceEEEeec
Q 001472 323 PGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVD 359 (1072)
Q Consensus 323 DGs~lLa~VlaiG~stG~~r~ivpD~et~eI~~i~iD 359 (1072)
.|+ -+++|...+.+..+..+-..+.+..+--|
T Consensus 879 ~gd-----eI~VgDlm~Sitll~y~~~eg~f~evArD 910 (1096)
T KOG1897|consen 879 KGD-----EIAVGDLMRSITLLQYKGDEGNFEEVARD 910 (1096)
T ss_pred cCc-----EEEEeeccceEEEEEEeccCCceEEeehh
Confidence 888 56666666666666555455444444333
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=1.1 Score=57.01 Aligned_cols=192 Identities=9% Similarity=-0.027 Sum_probs=100.2
Q ss_pred CeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecC------CeEEEEE
Q 001472 102 NCTAVEFHPFGEFFASGCMD-----TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD------NVVKVWD 170 (1072)
Q Consensus 102 ~VtsLafSPdg~~LaSgs~D-----GsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~D------GsI~IWD 170 (1072)
.+..+.|+|+|++|+.+... -.|++.|+.++..+...-... -..++|.+|++.|+.+..+ ..|+.|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 36678899999988887432 358899998876432221111 1459999999877665432 3688889
Q ss_pred CCCC--ceEEEeeecCCceE-EEEEcCCCcEEEEEEC---CCeEEEEECC--CCcEEEeeCCCCCCeEEEEEeCCCCEEE
Q 001472 171 LTAG--KLLHDFKFHEGHIR-SIDFHPLEFLLATGSA---DRTVKFWDLE--TFELIGSTRPEVTGVHAITFHPDGRTLF 242 (1072)
Q Consensus 171 l~tg--k~i~~~~~h~g~It-sLafSPdg~lLaTgS~---DGtIrIWDl~--tge~i~~~~~h~~~VtsIafSPDG~~La 242 (1072)
+.++ +....+........ .+..+.++.+++..+. ++.+.+|+.. .+.....+.........+. +..+.+++
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~ 284 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYL 284 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEE
Confidence 9887 33334443333333 3333447776665543 3568888853 3332222222222222222 33333333
Q ss_pred EEECC--cEEEEEecC---Ceeeccccc-CCCeeeeEEecCCCEEEEEEcCCeEEEEEcC
Q 001472 243 SGFDD--NLKVYSWEP---VICHDSVDM-GWSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 243 sGsdg--~I~Vwd~~s---~~~~~~l~~-~~s~i~~l~spDGk~LAsgs~DGsVrIWDld 296 (1072)
....+ ..+|+.+.- ......+.. ....+..+....+.++++...+|.-++|-++
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEc
Confidence 33222 234443322 111222222 1223333333344566666677777776554
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.061 Score=63.98 Aligned_cols=194 Identities=15% Similarity=0.197 Sum_probs=121.5
Q ss_pred CCeEEEEEecCCCcEEEEEECCCeEEEEE--------CCCCceEEE-e------eCCCC-CeEEEEEcCCCCEEE-EEEc
Q 001472 16 ANVNCISIGKKACRFLITGGDDQKVNLWA--------IGKPTALMS-L------CGLSS-PVDSVAFDSAEVLVL-AGAS 78 (1072)
Q Consensus 16 g~Vt~IafSPdg~~lLaTGs~DGtV~IWD--------l~t~~~l~s-l------~~hs~-~ItsLafSPdG~~La-tGS~ 78 (1072)
+.|.++++...++.+|+.|... ++|+. -.++-.... + .++.. +-..+-...+.++|+ .+..
T Consensus 277 ~~i~sl~~~a~~NS~Lvv~~~n--s~V~Rn~~iGVfk~ekgl~f~~~i~n~s~~~g~S~~P~K~mL~~~dsnlil~~~~~ 354 (644)
T KOG2395|consen 277 GGIGSLDEGALDNSFLVVGYGN--SYVTRNNRIGVFKNEKGLEFKAAIKNVSDGDGKSIDPHKAMLHRADSNLILMDGGE 354 (644)
T ss_pred cccchhhhcccCCceEEecccc--eEEEecceeeeeccCCceEEEeccCcccCCCccccCcchhhhhccccceEeeCCCC
Confidence 5677788876665677776553 44432 112211111 0 01110 111122223344443 3445
Q ss_pred CCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCC-------EEEEEeCCCeEEEEECCCCeE--EEEEecC----CCCe
Q 001472 79 TGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGE-------FFASGCMDTNLKIWDIRKKGC--IHTYKGH----TRGI 145 (1072)
Q Consensus 79 DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~-------~LaSgs~DGsI~IWDlrtgk~--v~~l~~h----~~~V 145 (1072)
...|+-.|++.|+.+..++.+.. |.-+.+.|+.+ .-++|-.+..|+-||.+-... +....+| ....
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nF 433 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNF 433 (644)
T ss_pred cCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccccc
Confidence 56799999999999999987666 77788888764 234556678899999874322 2222222 2235
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECC
Q 001472 146 NTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLE 214 (1072)
Q Consensus 146 tsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~ 214 (1072)
.|++-..+| ++++|+.+|.|++||--.......+.+...+|..+..+.+|++|++.+ +.++.+.++.
T Consensus 434 sc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 434 SCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 666666565 799999999999999733333445677788999999999999987555 5677777754
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=96.50 E-value=2.1 Score=49.85 Aligned_cols=193 Identities=17% Similarity=0.088 Sum_probs=115.7
Q ss_pred EEEEEECCCeEEEEECCCCceEEEeeCCC--CCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCC-CCeEEE
Q 001472 30 FLITGGDDQKVNLWAIGKPTALMSLCGLS--SPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHK-SNCTAV 106 (1072)
Q Consensus 30 lLaTGs~DGtV~IWDl~t~~~l~sl~~hs--~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~-~~VtsL 106 (1072)
.++++..+|.|.-.|..++..+....... ..+.+-.+..+|+ |++++.+|.++.+|..+|+.+....... ..+...
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 46666788888888888888665443221 2222223333565 7888889999999998999988877555 111222
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC---CeEEEEEcCCCCEEEEEec--CCeEEEEECCCCceEEEee
Q 001472 107 EFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTR---GINTIRFTPDGRWVVSGGF--DNVVKVWDLTAGKLLHDFK 181 (1072)
Q Consensus 107 afSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~---~VtsLafSPDG~~LaTGS~--DGsI~IWDl~tgk~i~~~~ 181 (1072)
.+-.++ .++.++.+|.++..|..++.....+..... .+..--...++ .++.+.. ++.+.-+|..+|......+
T Consensus 149 ~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 149 PVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred cEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeeeee
Confidence 222233 344444789999999998988777553221 11111111233 3555555 6678888888888877743
Q ss_pred ecC----CceEEE-EEcC----CCcEEEEEECCCeEEEEECCCCcEEEeeCCC
Q 001472 182 FHE----GHIRSI-DFHP----LEFLLATGSADRTVKFWDLETFELIGSTRPE 225 (1072)
Q Consensus 182 ~h~----g~ItsL-afSP----dg~lLaTgS~DGtIrIWDl~tge~i~~~~~h 225 (1072)
.+. ..+... .+.. .+..++.++.++.+...|..+++.+..+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 211 111001 1110 1223456677888999999999998887664
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.12 Score=63.71 Aligned_cols=209 Identities=11% Similarity=0.145 Sum_probs=99.2
Q ss_pred eEEEEECCCCceEEEeeCCCCCe--EEEEEcCCCCEEEEEEcC------CeEEEEEcCCCeeEE--EEeCCCCCeEEEEE
Q 001472 39 KVNLWAIGKPTALMSLCGLSSPV--DSVAFDSAEVLVLAGAST------GVIKLWDLEESKMVR--TLTGHKSNCTAVEF 108 (1072)
Q Consensus 39 tV~IWDl~t~~~l~sl~~hs~~I--tsLafSPdG~~LatGS~D------GsI~IWDl~tgk~i~--tl~~h~~~VtsLaf 108 (1072)
.+..||..+..... +.....+. .+++. -++..+++||.+ ..+..||..++.-.. .+........ ++
T Consensus 273 ~v~~yd~~~~~W~~-l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~-~~- 348 (557)
T PHA02713 273 CILVYNINTMEYSV-ISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS-LA- 348 (557)
T ss_pred CEEEEeCCCCeEEE-CCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee-EE-
Confidence 46678876654222 11111111 12222 356667777753 347788887664211 1111111112 22
Q ss_pred cCCCCEEEEEeCCC-----eEEEEECCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEecCC-----------------
Q 001472 109 HPFGEFFASGCMDT-----NLKIWDIRKKGCIH--TYKGHTRGINTIRFTPDGRWVVSGGFDN----------------- 164 (1072)
Q Consensus 109 SPdg~~LaSgs~DG-----sI~IWDlrtgk~v~--~l~~h~~~VtsLafSPDG~~LaTGS~DG----------------- 164 (1072)
.-+|+.++.||.++ .+..||..+..-.. .+.........+.+ +|++.+.||.++
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccc
Confidence 22577778887754 47889987654221 11111111122222 577777777542
Q ss_pred ------eEEEEECCCCceEEEeeecCCceE-EEEEcCCCcEEEEEECCC------eEEEEECCC-Cc--EEEeeCCCCCC
Q 001472 165 ------VVKVWDLTAGKLLHDFKFHEGHIR-SIDFHPLEFLLATGSADR------TVKFWDLET-FE--LIGSTRPEVTG 228 (1072)
Q Consensus 165 ------sI~IWDl~tgk~i~~~~~h~g~It-sLafSPdg~lLaTgS~DG------tIrIWDl~t-ge--~i~~~~~h~~~ 228 (1072)
.+..||..+.+-...-........ +++ .-++.+.+.||.++ .+..||..+ .+ .+..+......
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 477788876653221111111111 122 22467777777542 467899886 33 33333222222
Q ss_pred eEEEEEeCCCCEEEEEECCc---EEEEEecC
Q 001472 229 VHAITFHPDGRTLFSGFDDN---LKVYSWEP 256 (1072)
Q Consensus 229 VtsIafSPDG~~LasGsdg~---I~Vwd~~s 256 (1072)
...+.+ +|+..++|+.++ +..||..+
T Consensus 506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 506 LHTILH--DNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred ceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence 222222 567777765333 44555443
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.19 Score=62.16 Aligned_cols=223 Identities=17% Similarity=0.206 Sum_probs=116.8
Q ss_pred CCCCEEEEEEcCC------eEEEEEcCCCeeEEEEeC-CCCCeEEEEEcCCCCEEEEEeCC-C-----eEEEEECCCCeE
Q 001472 68 SAEVLVLAGASTG------VIKLWDLEESKMVRTLTG-HKSNCTAVEFHPFGEFFASGCMD-T-----NLKIWDIRKKGC 134 (1072)
Q Consensus 68 PdG~~LatGS~DG------sI~IWDl~tgk~i~tl~~-h~~~VtsLafSPdg~~LaSgs~D-G-----sI~IWDlrtgk~ 134 (1072)
..+..+++|+.++ .+..||..++.-.....- ....-.++++. ++..+++||.| | .+..||...++-
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 3456777777763 577888877643222111 12223344444 46778888888 3 578888877662
Q ss_pred EE--EEecCCCCeEEEEEcCCCCEEEEEecCC-----eEEEEECCCCceEEE--eeecCCceEEEEEcCCCcEEEEEECC
Q 001472 135 IH--TYKGHTRGINTIRFTPDGRWVVSGGFDN-----VVKVWDLTAGKLLHD--FKFHEGHIRSIDFHPLEFLLATGSAD 205 (1072)
Q Consensus 135 v~--~l~~h~~~VtsLafSPDG~~LaTGS~DG-----sI~IWDl~tgk~i~~--~~~h~g~ItsLafSPdg~lLaTgS~D 205 (1072)
.. .+...........+ +|.+.++||.|| .+-.||..+.+.-.. +...........+ +|.+.++||.+
T Consensus 362 ~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~ 437 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGD 437 (571)
T ss_pred eccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcC
Confidence 22 11111111112222 577888999887 477888876543222 1111111222222 57888888865
Q ss_pred C------eEEEEECCCCcEE--EeeCCCCCCeEEEEEeCCCCEEEEEE-CC-----cEEEEEecCCeeecccccCCCee-
Q 001472 206 R------TVKFWDLETFELI--GSTRPEVTGVHAITFHPDGRTLFSGF-DD-----NLKVYSWEPVICHDSVDMGWSTL- 270 (1072)
Q Consensus 206 G------tIrIWDl~tge~i--~~~~~h~~~VtsIafSPDG~~LasGs-dg-----~I~Vwd~~s~~~~~~l~~~~s~i- 270 (1072)
+ ++..||..+.... ..+....... .++.. ++...++|+ ++ .+..||.........-.......
T Consensus 438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA 515 (571)
T ss_pred CCccccceEEEEcCCCCceeecCCcccccccc-eEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence 4 4778888765432 2222221212 23333 455555554 33 26677776655433322222111
Q ss_pred eeEEecCCCEEEEEEcCC-----eEEEEEcCC
Q 001472 271 GDLCINDGKLLGCSFYRN-----SVGIWVADV 297 (1072)
Q Consensus 271 ~~l~spDGk~LAsgs~DG-----sVrIWDlds 297 (1072)
..+...++++.++|+.|| +|..||...
T Consensus 516 ~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 516 VGVVVLGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ccEEEECCEEEEEecccCccccceeEEcCCCC
Confidence 223345777788888775 466665443
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.029 Score=71.00 Aligned_cols=98 Identities=23% Similarity=0.383 Sum_probs=74.5
Q ss_pred cEEEEEECCCeEEEEECCCC-ceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEE-
Q 001472 29 RFLITGGDDQKVNLWAIGKP-TALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAV- 106 (1072)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~-~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsL- 106 (1072)
.+++.|+..|.|-..|.... .....-....++|++++|+.+|..++.|-.+|.|.+||...++.++.+..|..+..++
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 46888888899988887442 2222223346889999999999999999999999999999999998888777665544
Q ss_pred --EEcCCCCEEEEEeCCCeEEEEE
Q 001472 107 --EFHPFGEFFASGCMDTNLKIWD 128 (1072)
Q Consensus 107 --afSPdg~~LaSgs~DGsI~IWD 128 (1072)
.|..++..++++...|. +|.
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEE
Confidence 44445667888777776 454
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.36 Score=52.75 Aligned_cols=212 Identities=15% Similarity=0.164 Sum_probs=122.1
Q ss_pred EecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCC---CEEEEEEcCCeEEEEE--cCCCeeEEEEe
Q 001472 23 IGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE---VLVLAGASTGVIKLWD--LEESKMVRTLT 97 (1072)
Q Consensus 23 fSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG---~~LatGS~DGsI~IWD--l~tgk~i~tl~ 97 (1072)
|.-..+.++.+--..|.|.-||+...+....-. ...+..++.|--.+ .+.+.++..-.|.-|| .+.....+++.
T Consensus 22 w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~i-e~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ 100 (310)
T KOG4499|consen 22 WDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKI-EGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLF 100 (310)
T ss_pred eEEecceEEEEEeccCceehhhhhhhheEEEEE-ecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeecc
Confidence 444444566666667888889986654332221 11223344443222 2333333333455677 33334444422
Q ss_pred C-----CCCCeEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE-Eec
Q 001472 98 G-----HKSNCTAVEFHPFGEFFASGCM---------DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVS-GGF 162 (1072)
Q Consensus 98 ~-----h~~~VtsLafSPdg~~LaSgs~---------DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaT-GS~ 162 (1072)
. .......-..+|+|++++-.-. .|.++.|-.. + .+..+...-.--+.++|+.+.+.+.. -+.
T Consensus 101 ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h-~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsl 178 (310)
T KOG4499|consen 101 EVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-H-QVELIWNCVGISNGLAWDSDAKKFYYIDSL 178 (310)
T ss_pred ccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC-C-CceeeehhccCCccccccccCcEEEEEccC
Confidence 1 1334566678899998432211 2455555432 1 12222223333467899988776654 455
Q ss_pred CCeEEEEE--CCCCce-----EEEeee----cCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEE
Q 001472 163 DNVVKVWD--LTAGKL-----LHDFKF----HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHA 231 (1072)
Q Consensus 163 DGsI~IWD--l~tgk~-----i~~~~~----h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~Vts 231 (1072)
+-.|.-|| ..+|.. +..++. ..-..-.+++.-.|++.++.-..|+|..+|..+|+.+..+......|++
T Consensus 179 n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qits 258 (310)
T KOG4499|consen 179 NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITS 258 (310)
T ss_pred ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence 67787787 555542 333321 1111234556667888888888899999999999999999888889999
Q ss_pred EEEeCC
Q 001472 232 ITFHPD 237 (1072)
Q Consensus 232 IafSPD 237 (1072)
++|-.-
T Consensus 259 ccFgGk 264 (310)
T KOG4499|consen 259 CCFGGK 264 (310)
T ss_pred EEecCC
Confidence 999643
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.15 Score=63.03 Aligned_cols=183 Identities=16% Similarity=0.183 Sum_probs=99.8
Q ss_pred cEEEEEECCC------eEEEEECCCCceEEEeeC-CCCCeEEEEEcCCCCEEEEEEcC-C-----eEEEEEcCCCeeEE-
Q 001472 29 RFLITGGDDQ------KVNLWAIGKPTALMSLCG-LSSPVDSVAFDSAEVLVLAGAST-G-----VIKLWDLEESKMVR- 94 (1072)
Q Consensus 29 ~lLaTGs~DG------tV~IWDl~t~~~l~sl~~-hs~~ItsLafSPdG~~LatGS~D-G-----sI~IWDl~tgk~i~- 94 (1072)
.+++.||.++ .+..||..++.......- ....-.++++. ++...++||.+ | .+..||..+++-..
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 6777887774 577888866643322211 12223334443 46778888888 3 57788877665222
Q ss_pred -EEeCCCCCeEEEEEcCCCCEEEEEeCCCe-----EEEEECCCCeEE--EEEecCCCCeEEEEEcCCCCEEEEEecCC--
Q 001472 95 -TLTGHKSNCTAVEFHPFGEFFASGCMDTN-----LKIWDIRKKGCI--HTYKGHTRGINTIRFTPDGRWVVSGGFDN-- 164 (1072)
Q Consensus 95 -tl~~h~~~VtsLafSPdg~~LaSgs~DGs-----I~IWDlrtgk~v--~~l~~h~~~VtsLafSPDG~~LaTGS~DG-- 164 (1072)
.+...........+ +|...++||.||. |-.||..+.+.. ..+...........+ +|.+.++||.++
T Consensus 365 a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 365 APMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSS 440 (571)
T ss_pred CCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCc
Confidence 11111222222222 5788889988864 777887655421 111111111222222 577778888554
Q ss_pred ----eEEEEECCCCceEEE--eeecCCceEEEEEcCCCcEEEEEECCCe-----EEEEECCCCcE
Q 001472 165 ----VVKVWDLTAGKLLHD--FKFHEGHIRSIDFHPLEFLLATGSADRT-----VKFWDLETFEL 218 (1072)
Q Consensus 165 ----sI~IWDl~tgk~i~~--~~~h~g~ItsLafSPdg~lLaTgS~DGt-----IrIWDl~tge~ 218 (1072)
.+..||..+++.... +........ ++. -++.+.++||.|+. |..||..+.+.
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCce
Confidence 577888877654322 221111122 222 25788888887763 77888876544
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.059 Score=68.43 Aligned_cols=101 Identities=18% Similarity=0.335 Sum_probs=75.7
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCee-EEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEE
Q 001472 69 AEVLVLAGASTGVIKLWDLEESKM-VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINT 147 (1072)
Q Consensus 69 dG~~LatGS~DGsI~IWDl~tgk~-i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~Vts 147 (1072)
.+..++.|+..|.+...|+...-. ...-....++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..+..+...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 566789999999999999865311 1111234678999999999999999999999999999999998888776665544
Q ss_pred E---EEcCCCCEEEEEecCCeEEEEEC
Q 001472 148 I---RFTPDGRWVVSGGFDNVVKVWDL 171 (1072)
Q Consensus 148 L---afSPDG~~LaTGS~DGsI~IWDl 171 (1072)
+ .+..++..++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4 44445566777777775 5554
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.053 Score=64.47 Aligned_cols=138 Identities=16% Similarity=0.174 Sum_probs=98.1
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE-------EEEEecCCeEEEEECCCCce--EEEeeec--
Q 001472 115 FASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW-------VVSGGFDNVVKVWDLTAGKL--LHDFKFH-- 183 (1072)
Q Consensus 115 LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~-------LaTGS~DGsI~IWDl~tgk~--i~~~~~h-- 183 (1072)
|..+.....|+-.|++.|+.+..++.+.. |.-+.+.|+++. -+.|-.+..|.-||.+-... +...++|
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 33444556799999999999999987665 777888886541 23455688899999874322 2222222
Q ss_pred --CCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCcEEEEEe
Q 001472 184 --EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSW 254 (1072)
Q Consensus 184 --~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~ 254 (1072)
.....|++-..+| ++++|+.+|.|++||--.......+.+...+|..+..+.+|++|++.++..+.+.+.
T Consensus 428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred ccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 2335566666555 688899999999999733333344566677899999999999999999988777765
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.27 E-value=1.9 Score=51.33 Aligned_cols=241 Identities=15% Similarity=0.188 Sum_probs=112.3
Q ss_pred CceEEEEe-cCC-CCeEEEEEec----------CCCcEEEEEE-CCCeEEEEECCC----CceEEEeeC---CC----CC
Q 001472 5 GYKLQEFV-AHS-ANVNCISIGK----------KACRFLITGG-DDQKVNLWAIGK----PTALMSLCG---LS----SP 60 (1072)
Q Consensus 5 Gk~I~~L~-gHs-g~Vt~IafSP----------dg~~lLaTGs-~DGtV~IWDl~t----~~~l~sl~~---hs----~~ 60 (1072)
|+.|+.+. .|. +.....-|+. ...++|+..+ .++.|+|+|+.+ .+....+.. +. ..
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~ 131 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSR 131 (461)
T ss_dssp TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEE
T ss_pred ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCC
Confidence 55666653 333 3666666651 1225666655 688999999963 333333321 11 11
Q ss_pred eEEEEEcCCCCEEEEEEc------CCeEEEEEcCCCeeEEEEeCC---CCCeEEEEEcCCCCEEEEEeC-----------
Q 001472 61 VDSVAFDSAEVLVLAGAS------TGVIKLWDLEESKMVRTLTGH---KSNCTAVEFHPFGEFFASGCM----------- 120 (1072)
Q Consensus 61 ItsLafSPdG~~LatGS~------DGsI~IWDl~tgk~i~tl~~h---~~~VtsLafSPdg~~LaSgs~----------- 120 (1072)
...+..-|+|..++++-. .|-+.++|-++.+........ ...-+.+.|.|..+.++++..
T Consensus 132 PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~ 211 (461)
T PF05694_consen 132 PHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFN 211 (461)
T ss_dssp EEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---
T ss_pred CceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCC
Confidence 223334478888877432 357889998887777666542 233577888998888888642
Q ss_pred ---------CCeEEEEECCCCeEEEEEecCCC--CeEEEEEcCC--CCEEEEE-ecCCeEEEEEC-CCCc----eEEEee
Q 001472 121 ---------DTNLKIWDIRKKGCIHTYKGHTR--GINTIRFTPD--GRWVVSG-GFDNVVKVWDL-TAGK----LLHDFK 181 (1072)
Q Consensus 121 ---------DGsI~IWDlrtgk~v~~l~~h~~--~VtsLafSPD--G~~LaTG-S~DGsI~IWDl-~tgk----~i~~~~ 181 (1072)
..++.+||+.+.+.++.+.-... ....+.|..+ ..+-++| -..+.|..|-- ..++ .+..+.
T Consensus 212 ~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip 291 (461)
T PF05694_consen 212 PEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIP 291 (461)
T ss_dssp TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred hhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECC
Confidence 24799999999999999875432 3456677653 4443333 33445554433 3332 122221
Q ss_pred ec-----------------CCceEEEEEcCCCcEEEEEE-CCCeEEEEECCCC---cEEEeeC----------------C
Q 001472 182 FH-----------------EGHIRSIDFHPLEFLLATGS-ADRTVKFWDLETF---ELIGSTR----------------P 224 (1072)
Q Consensus 182 ~h-----------------~g~ItsLafSPdg~lLaTgS-~DGtIrIWDl~tg---e~i~~~~----------------~ 224 (1072)
.. .+-|+.|.+|.|.++|++.+ .+|.|+.||+..- +.+.... .
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~ 371 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKR 371 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS----
T ss_pred CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccc
Confidence 10 23478999999999988776 4899999999752 2222211 1
Q ss_pred CCCCeEEEEEeCCCCEEEEEE
Q 001472 225 EVTGVHAITFHPDGRTLFSGF 245 (1072)
Q Consensus 225 h~~~VtsIafSPDG~~LasGs 245 (1072)
..++..-+..|-||+.|.++.
T Consensus 372 l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 372 LRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp --S----EEE-TTSSEEEEE-
T ss_pred cCCCCCeEEEccCCeEEEEEe
Confidence 112345567777887777653
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.23 Score=48.48 Aligned_cols=101 Identities=14% Similarity=0.220 Sum_probs=69.9
Q ss_pred eEEEE---EecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEE
Q 001472 18 VNCIS---IGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVR 94 (1072)
Q Consensus 18 Vt~Ia---fSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~ 94 (1072)
|++++ |..+|.+.|++|+.|..|++|+- ...+..+.. ...|.++.-... ..++.+..+|+|-+|+- ...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 44554 55677789999999999999983 455666653 556777776655 56888899999999974 34455
Q ss_pred EEeCCCCCeEEEEEcC-CC---CEEEEEeCCCeEE
Q 001472 95 TLTGHKSNCTAVEFHP-FG---EFFASGCMDTNLK 125 (1072)
Q Consensus 95 tl~~h~~~VtsLafSP-dg---~~LaSgs~DGsI~ 125 (1072)
..+... .+.++.+.. ++ .-|++|-.+|.|-
T Consensus 76 RiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 555433 356665543 32 2688888888774
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.6 Score=50.97 Aligned_cols=141 Identities=13% Similarity=0.098 Sum_probs=80.8
Q ss_pred CCeEEEEEcCCCCEEEEEe-----------CCC-eEEEEECCC--Ce--EEEEEecCCCCeEEEEEcCCCCEEEEEecCC
Q 001472 101 SNCTAVEFHPFGEFFASGC-----------MDT-NLKIWDIRK--KG--CIHTYKGHTRGINTIRFTPDGRWVVSGGFDN 164 (1072)
Q Consensus 101 ~~VtsLafSPdg~~LaSgs-----------~DG-sI~IWDlrt--gk--~v~~l~~h~~~VtsLafSPDG~~LaTGS~DG 164 (1072)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+ ....+...-.....++|.++| +++ ++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~- 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP- 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC-
Confidence 3456789999998766642 223 687776443 22 223443333456889999988 444 4444
Q ss_pred eEEEE-ECCCC-----c--eE-EEeee----cCCceEEEEEcCCCcEEEEEECC-------------------CeEEEEE
Q 001472 165 VVKVW-DLTAG-----K--LL-HDFKF----HEGHIRSIDFHPLEFLLATGSAD-------------------RTVKFWD 212 (1072)
Q Consensus 165 sI~IW-Dl~tg-----k--~i-~~~~~----h~g~ItsLafSPdg~lLaTgS~D-------------------GtIrIWD 212 (1072)
.|..| |.... + .+ ..+.. +......++|.|||.+.++-+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 45444 54321 2 12 12222 12346789999999876655421 4566666
Q ss_pred CCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEE
Q 001472 213 LETFELIGSTRPEVTGVHAITFHPDGRTLFSGF 245 (1072)
Q Consensus 213 l~tge~i~~~~~h~~~VtsIafSPDG~~LasGs 245 (1072)
...++. ..+.........++|+++|.++++-.
T Consensus 171 pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 665443 22322223457899999999887643
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.016 Score=41.28 Aligned_cols=38 Identities=39% Similarity=0.816 Sum_probs=33.4
Q ss_pred eeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001472 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD 128 (1072)
Q Consensus 91 k~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWD 128 (1072)
+....+..|...|.++.|++++.++++++.||.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566677888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.00 E-value=1.3 Score=56.63 Aligned_cols=112 Identities=15% Similarity=0.189 Sum_probs=76.3
Q ss_pred CCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCC--------eEEEEEcC----------------CCCEEEEEeCCCeEE
Q 001472 70 EVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN--------CTAVEFHP----------------FGEFFASGCMDTNLK 125 (1072)
Q Consensus 70 G~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~--------VtsLafSP----------------dg~~LaSgs~DGsI~ 125 (1072)
+..|++++.++.|.-.|..+|+.+..+...... +..+.+.. .+..++.++.|+.|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567788888899999999999998877532211 22233321 244788888999999
Q ss_pred EEECCCCeEEEEEecCCCCe-------------EEEEEcC--CCCEEEEEec----------CCeEEEEECCCCceEEEe
Q 001472 126 IWDIRKKGCIHTYKGHTRGI-------------NTIRFTP--DGRWVVSGGF----------DNVVKVWDLTAGKLLHDF 180 (1072)
Q Consensus 126 IWDlrtgk~v~~l~~h~~~V-------------tsLafSP--DG~~LaTGS~----------DGsI~IWDl~tgk~i~~~ 180 (1072)
-.|.++|+.+..+.. .+.+ ..+.-.| .+..+++|+. +|.|+-+|..+|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998877642 1111 0111122 2345666643 688999999999999888
Q ss_pred ee
Q 001472 181 KF 182 (1072)
Q Consensus 181 ~~ 182 (1072)
..
T Consensus 353 ~~ 354 (764)
T TIGR03074 353 DP 354 (764)
T ss_pred ec
Confidence 73
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.94 E-value=4.4 Score=48.39 Aligned_cols=221 Identities=12% Similarity=0.091 Sum_probs=104.4
Q ss_pred CCEEEEEe-CCCeEEEEECCC----CeEEEEEec---C----CCCeEEEEEcCCCCEEEEEe--c----CCeEEEEECCC
Q 001472 112 GEFFASGC-MDTNLKIWDIRK----KGCIHTYKG---H----TRGINTIRFTPDGRWVVSGG--F----DNVVKVWDLTA 173 (1072)
Q Consensus 112 g~~LaSgs-~DGsI~IWDlrt----gk~v~~l~~---h----~~~VtsLafSPDG~~LaTGS--~----DGsI~IWDl~t 173 (1072)
.++|+..+ ..+.|+|+|+.+ -+..+.+.. + -.....+...|+|.+++++- . -|.+.++|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 45777777 568899999873 334444432 1 12234556668898887743 2 24788999988
Q ss_pred CceEEEeeecC---CceEEEEEcCCCcEEEEEE--------------------CCCeEEEEECCCCcEEEeeCCCCCC--
Q 001472 174 GKLLHDFKFHE---GHIRSIDFHPLEFLLATGS--------------------ADRTVKFWDLETFELIGSTRPEVTG-- 228 (1072)
Q Consensus 174 gk~i~~~~~h~---g~ItsLafSPdg~lLaTgS--------------------~DGtIrIWDl~tge~i~~~~~h~~~-- 228 (1072)
.+....+.... ..-..+.|.|..+.+++.. ...++.+||+.+.+.++.+......
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 88887776432 2346778899888888863 2357999999999998887654332
Q ss_pred eEEEEEeC--CCCEEEEEECCcEEEEEecC---Cee--eccccc--------------------CCCeeeeEEecCCCEE
Q 001472 229 VHAITFHP--DGRTLFSGFDDNLKVYSWEP---VIC--HDSVDM--------------------GWSTLGDLCINDGKLL 281 (1072)
Q Consensus 229 VtsIafSP--DG~~LasGsdg~I~Vwd~~s---~~~--~~~l~~--------------------~~s~i~~l~spDGk~L 281 (1072)
...|.|.. +..+-++|.--.-.||-|-. +.. ...+.. ..-+.....+.|.++|
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfL 326 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFL 326 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EE
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEE
Confidence 45666654 45555554333333444321 111 111111 1223455667788988
Q ss_pred EEEE-cCCeEEEEEcCCCcee----eeecCCC-----------CCCCCCeeEEEECCCCCccceEEE
Q 001472 282 GCSF-YRNSVGIWVADVSHVE----PYGVGAP-----------EPDQSICTEVKFNPPGSHSLEKVG 332 (1072)
Q Consensus 282 Asgs-~DGsVrIWDlds~~l~----~~~v~~~-----------~~~~~~ItsVaFSPDGs~lLa~Vl 332 (1072)
..+. ..|.|+.||+...... ...++-. ....+...-++.|-||+++.++-.
T Consensus 327 Yvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 327 YVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp EEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred EEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 6665 6799999998543221 1111110 112334567889999998666543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.93 E-value=5.5 Score=47.66 Aligned_cols=145 Identities=11% Similarity=0.188 Sum_probs=89.8
Q ss_pred cCCCcEEEEEECCCeEEEEECCCCc----eEEEeeCCCCCeEEEEEcC-----CCCEEEEEEcCCeEEEEEcCC--Ce--
Q 001472 25 KKACRFLITGGDDQKVNLWAIGKPT----ALMSLCGLSSPVDSVAFDS-----AEVLVLAGASTGVIKLWDLEE--SK-- 91 (1072)
Q Consensus 25 Pdg~~lLaTGs~DGtV~IWDl~t~~----~l~sl~~hs~~ItsLafSP-----dG~~LatGS~DGsI~IWDl~t--gk-- 91 (1072)
+++...|++|+..|.++||+..... .+..-.....+|..+.+-. +...||+ -.-..+.||.+.. |.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence 4455789999999999999984432 1111233467888777642 2334544 4557788887731 11
Q ss_pred -----eEEEEeCC--CCCeEEEEEcCCC-----CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 001472 92 -----MVRTLTGH--KSNCTAVEFHPFG-----EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVS 159 (1072)
Q Consensus 92 -----~i~tl~~h--~~~VtsLafSPdg-----~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaT 159 (1072)
.+..+..| ......+++-|-| .+|++=+.||.+.+|+-+.....+.+.. .--...++|.+....|++
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEE
Confidence 12222223 2234445554432 4788889999999999655443333332 223456788888888999
Q ss_pred EecCCeEEEEEC
Q 001472 160 GGFDNVVKVWDL 171 (1072)
Q Consensus 160 GS~DGsI~IWDl 171 (1072)
++.+..|..|..
T Consensus 192 ~sss~~l~~Yky 203 (418)
T PF14727_consen 192 ASSSWTLECYKY 203 (418)
T ss_pred ecCceeEEEecH
Confidence 998888888864
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.6 Score=56.69 Aligned_cols=150 Identities=15% Similarity=0.224 Sum_probs=92.7
Q ss_pred CCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC----CCEEEEEecCCeEEEEECC
Q 001472 100 KSNCTAVEFHPFGEFFASGC---MDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPD----GRWVVSGGFDNVVKVWDLT 172 (1072)
Q Consensus 100 ~~~VtsLafSPdg~~LaSgs---~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPD----G~~LaTGS~DGsI~IWDl~ 172 (1072)
-.++..++|. ||+.++-.. .+|.+++=| ...+..|. .|..+.|.|- .--|++.-....|.+|-+.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 3468889998 566444332 234443332 22344443 5889999984 2245555667899999875
Q ss_pred -----CCceEEEeeecCC---c--eEEEEEcCCCcEEEEEECCCeEEEEECCCCc-EEEeeCCCCCCeEEEEEeCCCCEE
Q 001472 173 -----AGKLLHDFKFHEG---H--IRSIDFHPLEFLLATGSADRTVKFWDLETFE-LIGSTRPEVTGVHAITFHPDGRTL 241 (1072)
Q Consensus 173 -----tgk~i~~~~~h~g---~--ItsLafSPdg~lLaTgS~DGtIrIWDl~tge-~i~~~~~h~~~VtsIafSPDG~~L 241 (1072)
..+.+..-.++-+ + ...+.|||...+|++-.....-.++++.... .++.-....+-|.|.+|..||+.|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 2233322221111 1 2456799999988887765555566665322 222222445779999999999999
Q ss_pred EEEECCcEEEEEecCC
Q 001472 242 FSGFDDNLKVYSWEPV 257 (1072)
Q Consensus 242 asGsdg~I~Vwd~~s~ 257 (1072)
+++-...+.-|-|+..
T Consensus 171 VVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEeCCeEEEEEecCc
Confidence 9987778777777654
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.6 Score=48.52 Aligned_cols=144 Identities=15% Similarity=0.044 Sum_probs=89.9
Q ss_pred CeEEEEEcCCCCEEEEEE---cCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE-CCCCeE-
Q 001472 60 PVDSVAFDSAEVLVLAGA---STGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD-IRKKGC- 134 (1072)
Q Consensus 60 ~ItsLafSPdG~~LatGS---~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWD-lrtgk~- 134 (1072)
.+...++++++..++... ....|+++... .....+. ....+....|++++...++...+....++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887766 23456666543 3222221 233788889999988777766666666663 333332
Q ss_pred EEEEecC--CCCeEEEEEcCCCCEEEEEe---cCCeEEEEECC---CC------ceEEEeeecCCceEEEEEcCCCcEEE
Q 001472 135 IHTYKGH--TRGINTIRFTPDGRWVVSGG---FDNVVKVWDLT---AG------KLLHDFKFHEGHIRSIDFHPLEFLLA 200 (1072)
Q Consensus 135 v~~l~~h--~~~VtsLafSPDG~~LaTGS---~DGsI~IWDl~---tg------k~i~~~~~h~g~ItsLafSPdg~lLa 200 (1072)
...+... ...|..+.++|||..++... .++.|.+--+. .+ ............+..++|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 1222211 12799999999999887655 35677776543 22 11122222345789999999998877
Q ss_pred EEECCC
Q 001472 201 TGSADR 206 (1072)
Q Consensus 201 TgS~DG 206 (1072)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 776544
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.23 Score=60.63 Aligned_cols=180 Identities=15% Similarity=0.171 Sum_probs=88.5
Q ss_pred cEEEEEECCC------eEEEEECCCCceEEEeeCC---CCCeEEEEEcCCCCEEEEEEcC-----CeEEEEEcCCCeeEE
Q 001472 29 RFLITGGDDQ------KVNLWAIGKPTALMSLCGL---SSPVDSVAFDSAEVLVLAGAST-----GVIKLWDLEESKMVR 94 (1072)
Q Consensus 29 ~lLaTGs~DG------tV~IWDl~t~~~l~sl~~h---s~~ItsLafSPdG~~LatGS~D-----GsI~IWDl~tgk~i~ 94 (1072)
.+++.||.++ .+..||..+.... .+... ......+. -++..++.||.+ ..+..||..+++-..
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 5667776543 4667777655432 22111 11112222 256777777765 357788877654221
Q ss_pred --EEeCCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeEEEEE--ecCCCCeEEEEEcCCCCEEEEEecC-
Q 001472 95 --TLTGHKSNCTAVEFHPFGEFFASGCMD------TNLKIWDIRKKGCIHTY--KGHTRGINTIRFTPDGRWVVSGGFD- 163 (1072)
Q Consensus 95 --tl~~h~~~VtsLafSPdg~~LaSgs~D------GsI~IWDlrtgk~v~~l--~~h~~~VtsLafSPDG~~LaTGS~D- 163 (1072)
.+....... +++. -+++.++.||.+ ..+..||..+++-...- ...... .+++. -++.+++.||.+
T Consensus 373 ~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~ 448 (534)
T PHA03098 373 EPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIY-HDGKIYVIGGISY 448 (534)
T ss_pred CCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEE-ECCEEEEECCccC
Confidence 111111111 1222 256677777632 35888998765432211 111111 12222 256666777643
Q ss_pred -------CeEEEEECCCCceEEEe--eecCCceEEEEEcCCCcEEEEEECC-----CeEEEEECCCCc
Q 001472 164 -------NVVKVWDLTAGKLLHDF--KFHEGHIRSIDFHPLEFLLATGSAD-----RTVKFWDLETFE 217 (1072)
Q Consensus 164 -------GsI~IWDl~tgk~i~~~--~~h~g~ItsLafSPdg~lLaTgS~D-----GtIrIWDl~tge 217 (1072)
..+.+||..+++....- .........+.+ ++.+++.|+.+ ..+.+||..+.+
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 23888998876543221 111111122222 56777777654 467888877643
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.80 E-value=3.3 Score=48.39 Aligned_cols=150 Identities=12% Similarity=0.102 Sum_probs=84.3
Q ss_pred eEEEEecC--CCCeEEEEEecCCCcEEEEEE-----------CCC-eEEEEECCC--Cc--eEEEeeCCCCCeEEEEEcC
Q 001472 7 KLQEFVAH--SANVNCISIGKKACRFLITGG-----------DDQ-KVNLWAIGK--PT--ALMSLCGLSSPVDSVAFDS 68 (1072)
Q Consensus 7 ~I~~L~gH--sg~Vt~IafSPdg~~lLaTGs-----------~DG-tV~IWDl~t--~~--~l~sl~~hs~~ItsLafSP 68 (1072)
++..+-.. -.....|+|.++| +++++-. ..+ .|.+++-.+ ++ ....+.........++|.+
T Consensus 3 ~~~l~A~~p~~~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~ 81 (367)
T TIGR02604 3 KVTLFAAEPLLRNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV 81 (367)
T ss_pred EEEEEECCCccCCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec
Confidence 44444433 4567889999998 5554432 223 777776532 22 2334443344568899999
Q ss_pred CCCEEEEEEcCCeEEEE-EcCC-----Cee--E-EEEeC----CCCCeEEEEEcCCCCEEEEEeC---------------
Q 001472 69 AEVLVLAGASTGVIKLW-DLEE-----SKM--V-RTLTG----HKSNCTAVEFHPFGEFFASGCM--------------- 120 (1072)
Q Consensus 69 dG~~LatGS~DGsI~IW-Dl~t-----gk~--i-~tl~~----h~~~VtsLafSPdg~~LaSgs~--------------- 120 (1072)
+| |++++.. .|..| |... ++. + ..+.. +......+.|.|||.++++.+.
T Consensus 82 ~G--lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~ 158 (367)
T TIGR02604 82 GG--VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDES 158 (367)
T ss_pred CC--EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCc
Confidence 88 4444443 45444 4431 121 1 11222 1334678999999986655441
Q ss_pred ----CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 001472 121 ----DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGG 161 (1072)
Q Consensus 121 ----DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS 161 (1072)
.|.|.-++...++. ..+.........++|+++|+++++-.
T Consensus 159 ~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 159 RQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 14566666655543 23322223457899999998776643
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.55 Score=45.97 Aligned_cols=100 Identities=15% Similarity=0.205 Sum_probs=69.0
Q ss_pred eEEEEEcC---CC-CEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 001472 61 VDSVAFDS---AE-VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH 136 (1072)
Q Consensus 61 ItsLafSP---dG-~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~ 136 (1072)
|.++++.. +| +.|++|+.|..|++|+- ...+.++. ..+.|.+++-... ..|+.+-.+|+|-+|+- ...++
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 45555543 33 68999999999999983 46677776 4566777777655 56889999999999984 34455
Q ss_pred EEecCCCCeEEEEEcC-C--C-CEEEEEecCCeEE
Q 001472 137 TYKGHTRGINTIRFTP-D--G-RWVVSGGFDNVVK 167 (1072)
Q Consensus 137 ~l~~h~~~VtsLafSP-D--G-~~LaTGS~DGsI~ 167 (1072)
.++.... +.++.+.. + | .-|++|-.+|.|-
T Consensus 76 RiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 5654444 56665543 3 2 2688888888764
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=3 Score=48.27 Aligned_cols=149 Identities=11% Similarity=0.084 Sum_probs=89.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEE-ECCCCeEEEEE-ecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceE
Q 001472 100 KSNCTAVEFHPFGEFFASGCMDTNLKIW-DIRKKGCIHTY-KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLL 177 (1072)
Q Consensus 100 ~~~VtsLafSPdg~~LaSgs~DGsI~IW-Dlrtgk~v~~l-~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i 177 (1072)
...+.++.+.+++.+++++ ..|.++.- | ..++....+ ......++++.+.+++..++++ ..|.+.+-....|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 4568899999988766665 56655432 2 222222222 2334578999999999876665 5676654333444332
Q ss_pred EEeee----cCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeC---CCCCCeEEEEEeCCCCEEEEEECCcEE
Q 001472 178 HDFKF----HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR---PEVTGVHAITFHPDGRTLFSGFDDNLK 250 (1072)
Q Consensus 178 ~~~~~----h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~---~h~~~VtsIafSPDG~~LasGsdg~I~ 250 (1072)
..... ....+..+.+.+++.++++ +.+|.|. +....++...... ......+.+.|..+++.+++|..|.|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il 326 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLL 326 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEE
Confidence 22221 1234788899988776654 4567554 4445444433332 222358889998888999999888765
Q ss_pred EEE
Q 001472 251 VYS 253 (1072)
Q Consensus 251 Vwd 253 (1072)
.|+
T Consensus 327 ~~~ 329 (334)
T PRK13684 327 RYV 329 (334)
T ss_pred Eec
Confidence 554
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.66 E-value=5.2 Score=45.38 Aligned_cols=270 Identities=11% Similarity=0.051 Sum_probs=148.9
Q ss_pred CCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe---e
Q 001472 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK---M 92 (1072)
Q Consensus 16 g~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk---~ 92 (1072)
+-+..+.++. .+++.+..+.-++|.|+.+......+......-..-.|.-.|++.+++..+.-+.+.|+.+.. +
T Consensus 87 ~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 87 DLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence 3445555654 467777777789999998776555443322212334444568899888866667788886543 3
Q ss_pred EEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---EEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEE
Q 001472 93 VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG---CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW 169 (1072)
Q Consensus 93 i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk---~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IW 169 (1072)
...+.........++.+ |++-+.++.|+-+.|.|+.... .+..+. ....+.++..+++--+++.. +--+.+-
T Consensus 164 agrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy--~egvliv 238 (370)
T COG5276 164 AGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY--DEGVLIV 238 (370)
T ss_pred eeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEc--ccceEEE
Confidence 33343334444667777 8888888899999999987543 333333 33368888888775555544 3447778
Q ss_pred ECCCCceEEEeeec-CCceEEE-EEcCCCcEEEEEECCCeEEEEECCCCcE--EE-eeCCCCCCeEEEEEeCCCCEEEEE
Q 001472 170 DLTAGKLLHDFKFH-EGHIRSI-DFHPLEFLLATGSADRTVKFWDLETFEL--IG-STRPEVTGVHAITFHPDGRTLFSG 244 (1072)
Q Consensus 170 Dl~tgk~i~~~~~h-~g~ItsL-afSPdg~lLaTgS~DGtIrIWDl~tge~--i~-~~~~h~~~VtsIafSPDG~~LasG 244 (1072)
|....+..+.+... ...+.++ .+.-.+++......+.-+.+.|+.+..- +. .+......-..+.. .|.++...
T Consensus 239 d~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yia 316 (370)
T COG5276 239 DVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIA 316 (370)
T ss_pred ecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEec
Confidence 87766644444321 1112222 2222466666666666677777664211 11 11111112222222 23444444
Q ss_pred ECCcEEEEEecCCeeecccccCC-CeeeeEEecCCCEEEEEEcCCeEEEEEc
Q 001472 245 FDDNLKVYSWEPVICHDSVDMGW-STLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1072)
Q Consensus 245 sdg~I~Vwd~~s~~~~~~l~~~~-s~i~~l~spDGk~LAsgs~DGsVrIWDl 295 (1072)
..+...+-+....+......... ....+..+-+.+++....+++.+.||+.
T Consensus 317 dkn~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 317 DKNTGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred cCCceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 33344444444332222211111 1112222345668888889999999975
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.58 E-value=2.5 Score=46.96 Aligned_cols=143 Identities=15% Similarity=0.123 Sum_probs=89.2
Q ss_pred CeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEE-ECCCCceE
Q 001472 102 NCTAVEFHPFGEFFASGC---MDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW-DLTAGKLL 177 (1072)
Q Consensus 102 ~VtsLafSPdg~~LaSgs---~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IW-Dl~tgk~i 177 (1072)
.+.+.+++++++.++... ....++++... ....... ....+....|++++...+....+....++ +...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688899999999777665 33456666543 3222222 23368888999997766665555555555 33333321
Q ss_pred -EEeee--cCCceEEEEEcCCCcEEEEEE---CCCeEEEEECC---CC------cEEEeeCCCCCCeEEEEEeCCCCEEE
Q 001472 178 -HDFKF--HEGHIRSIDFHPLEFLLATGS---ADRTVKFWDLE---TF------ELIGSTRPEVTGVHAITFHPDGRTLF 242 (1072)
Q Consensus 178 -~~~~~--h~g~ItsLafSPdg~lLaTgS---~DGtIrIWDl~---tg------e~i~~~~~h~~~VtsIafSPDG~~La 242 (1072)
..... ..+.|..+.++|||..++... .++.|++--+. .+ ..+.........+..+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 22221 122799999999998877766 35677776543 22 11222223345789999999999888
Q ss_pred EEECC
Q 001472 243 SGFDD 247 (1072)
Q Consensus 243 sGsdg 247 (1072)
.+...
T Consensus 182 ~~~~~ 186 (253)
T PF10647_consen 182 LGRSA 186 (253)
T ss_pred EeCCC
Confidence 76433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.5 Score=49.48 Aligned_cols=169 Identities=11% Similarity=0.192 Sum_probs=112.6
Q ss_pred EecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCC-CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001472 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGL-SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89 (1072)
Q Consensus 11 L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~h-s~~ItsLafSPdG~~LatGS~DGsI~IWDl~t 89 (1072)
+.|-...|.++.|+|+. +.|++......-.||=...|+.+..+... -.....+.|..+|++.++--.++.+.++.+..
T Consensus 81 i~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 34556679999999998 55666666666667766778888776421 23445788888888888888889999888765
Q ss_pred CeeEEE-------Ee--CC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---EEEEEecC-------CCCeEEEE
Q 001472 90 SKMVRT-------LT--GH-KSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG---CIHTYKGH-------TRGINTIR 149 (1072)
Q Consensus 90 gk~i~t-------l~--~h-~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk---~v~~l~~h-------~~~VtsLa 149 (1072)
...+.. +. .+ +...-.++|.|.+..|+++-...-+.||.+..+. .++....+ -..+.++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 532211 11 12 5667889999999988888777767776654332 11111111 12467888
Q ss_pred EcC-CCCEEEEEecCCeEEEEECCCCceEEEee
Q 001472 150 FTP-DGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181 (1072)
Q Consensus 150 fSP-DG~~LaTGS~DGsI~IWDl~tgk~i~~~~ 181 (1072)
|.+ .+.+|+.+.+++.+.-.|.. |..+..+.
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls 271 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLS-GEVIELLS 271 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence 887 45677777788888888864 55454444
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.53 Score=57.47 Aligned_cols=184 Identities=14% Similarity=0.149 Sum_probs=88.5
Q ss_pred CCCEEEEEeCCC------eEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEecC-----CeEEEEECCCCceE
Q 001472 111 FGEFFASGCMDT------NLKIWDIRKKGCIHTYK--GHTRGINTIRFTPDGRWVVSGGFD-----NVVKVWDLTAGKLL 177 (1072)
Q Consensus 111 dg~~LaSgs~DG------sI~IWDlrtgk~v~~l~--~h~~~VtsLafSPDG~~LaTGS~D-----GsI~IWDl~tgk~i 177 (1072)
++..++.||.++ .+..||..+......-. ........+. -++.+++.||.+ ..+..||..+.+..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 456667776542 57788887765422111 0111122222 256777778765 35778888766533
Q ss_pred EEeeecCC-ceEEEEEcCCCcEEEEEECC------CeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECC---
Q 001472 178 HDFKFHEG-HIRSIDFHPLEFLLATGSAD------RTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD--- 247 (1072)
Q Consensus 178 ~~~~~h~g-~ItsLafSPdg~lLaTgS~D------GtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg--- 247 (1072)
..-..... .-.+++. -++.+++.||.+ ..+..||+.+.+...............+...++..++.|+..
T Consensus 372 ~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 372 EEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYID 450 (534)
T ss_pred eCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCC
Confidence 21111111 1112222 256777777732 358899987654322111111111111223355666655321
Q ss_pred ------cEEEEEecCCeeecc--cccCCCeeeeEEecCCCEEEEEEcC-----CeEEEEEcCCC
Q 001472 248 ------NLKVYSWEPVICHDS--VDMGWSTLGDLCINDGKLLGCSFYR-----NSVGIWVADVS 298 (1072)
Q Consensus 248 ------~I~Vwd~~s~~~~~~--l~~~~s~i~~l~spDGk~LAsgs~D-----GsVrIWDlds~ 298 (1072)
.+.+||..+...... +....... .++..++++++.|+.+ +.|.+||.+..
T Consensus 451 ~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 451 NIKVYNIVESYNPVTNKWTELSSLNFPRINA-SLCIFNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCcccceEEEecCCCCceeeCCCCCcccccc-eEEEECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 267777665443322 11111111 2233477777777654 46777776544
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=95.06 E-value=4.5 Score=47.13 Aligned_cols=148 Identities=16% Similarity=0.045 Sum_probs=91.9
Q ss_pred CEEEEEEcCCeEEEEEcCCCeeEEEEeCCC--CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC-CCeEE
Q 001472 71 VLVLAGASTGVIKLWDLEESKMVRTLTGHK--SNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHT-RGINT 147 (1072)
Q Consensus 71 ~~LatGS~DGsI~IWDl~tgk~i~tl~~h~--~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~-~~Vts 147 (1072)
..++++..+|.|.-+|..++..+....... ..+.+-.+..+|+ +++++.+|.++.+|..+|+.+..+.... ..+..
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 345566788999999999988765443221 2333333443666 7778889999999998999988887655 11122
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCC---ceEEEEEcCCCcEEEEEEC--CCeEEEEECCCCcEEEe
Q 001472 148 IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG---HIRSIDFHPLEFLLATGSA--DRTVKFWDLETFELIGS 221 (1072)
Q Consensus 148 LafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g---~ItsLafSPdg~lLaTgS~--DGtIrIWDl~tge~i~~ 221 (1072)
...-.++ .+..++.++.+...|..+|+.......... .+..-... ....++.+.. ++.+.-+|..+|.....
T Consensus 148 ~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 148 PPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred CcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeee
Confidence 2222243 344444789999999999998877654221 11111111 2334444555 56778888888877665
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.74 Score=59.29 Aligned_cols=142 Identities=11% Similarity=0.117 Sum_probs=91.4
Q ss_pred CCeEEEEEcCCCCEEEEEEcC--CeEEEEEcCCCee-----EEEEe------CCCCCeEEEEEcCCCC-EEEEEeCCCeE
Q 001472 59 SPVDSVAFDSAEVLVLAGAST--GVIKLWDLEESKM-----VRTLT------GHKSNCTAVEFHPFGE-FFASGCMDTNL 124 (1072)
Q Consensus 59 ~~ItsLafSPdG~~LatGS~D--GsI~IWDl~tgk~-----i~tl~------~h~~~VtsLafSPdg~-~LaSgs~DGsI 124 (1072)
-+|..+...+|+...++.... -.|..||+++-.. ..-+. .......++.|+|.-. ..+++..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 455666666777665554433 3788999875321 11111 1233456788988543 45666778888
Q ss_pred EEEECCCCeE-EEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeee----cCCceEEEEEcCCCcEE
Q 001472 125 KIWDIRKKGC-IHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF----HEGHIRSIDFHPLEFLL 199 (1072)
Q Consensus 125 ~IWDlrtgk~-v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~----h~g~ItsLafSPdg~lL 199 (1072)
.+..+..... +..+. .....+|++|+|.|+.++.|...|++.-|... ++....+.+ ..+.|.+++|-....+|
T Consensus 181 ~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 8887654332 22222 34568999999999999999999999988753 444444332 14679999998777666
Q ss_pred EEE
Q 001472 200 ATG 202 (1072)
Q Consensus 200 aTg 202 (1072)
++-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 654
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=11 Score=44.86 Aligned_cols=143 Identities=12% Similarity=0.053 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCEEEEEecCCeEEEEECCCCce--EEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCc-----
Q 001472 145 INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL--LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE----- 217 (1072)
Q Consensus 145 VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~--i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge----- 217 (1072)
...+..+++|.+++++.....++-||- |.. ...-......+..+.|.+++.+++++ .+|.+. |....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 344566788887776654433334443 322 11112234568899999998888765 456544 3334443
Q ss_pred EEEeeCC--CCCCeEEEEEeCCCCEEEEEECCcEEEEEecCCeeecccc----cCCCeeeeEEecCCCEEEEEEcCCeEE
Q 001472 218 LIGSTRP--EVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVD----MGWSTLGDLCINDGKLLGCSFYRNSVG 291 (1072)
Q Consensus 218 ~i~~~~~--h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~----~~~s~i~~l~spDGk~LAsgs~DGsVr 291 (1072)
....... ....+..+.|.+++..+++|..|.+.. ..+.++...... .........+..+++.++.| .+|.|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~-s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il 394 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLR-STDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLL 394 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEE-eCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEE
Confidence 2222221 223589999999999988887775433 333333322221 11223344445556666655 677766
Q ss_pred EE
Q 001472 292 IW 293 (1072)
Q Consensus 292 IW 293 (1072)
-|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Confidence 55
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=1.1 Score=54.41 Aligned_cols=183 Identities=11% Similarity=0.042 Sum_probs=88.9
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEecC--CeEEEEECCCCceEEEee
Q 001472 111 FGEFFASGCMDT-----NLKIWDIRKKGCIHT--YKGHTRGINTIRFTPDGRWVVSGGFD--NVVKVWDLTAGKLLHDFK 181 (1072)
Q Consensus 111 dg~~LaSgs~DG-----sI~IWDlrtgk~v~~--l~~h~~~VtsLafSPDG~~LaTGS~D--GsI~IWDl~tgk~i~~~~ 181 (1072)
++..+++||.++ .+..||..++..... +....... +++ .-+|.+.+.||.+ ..+..||..+++....-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 355567776542 477788876653221 11111111 222 2367777777754 357888876654322111
Q ss_pred ecCCc-eEEEEEcCCCcEEEEEECCC---eEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCC
Q 001472 182 FHEGH-IRSIDFHPLEFLLATGSADR---TVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPV 257 (1072)
Q Consensus 182 ~h~g~-ItsLafSPdg~lLaTgS~DG---tIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~ 257 (1072)
..... -.+++ .-+|.+.+.||.++ .+..||..+.+....-..........+..-+|+..+.|+ ...+||.++.
T Consensus 349 l~~~r~~~~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG--~~e~ydp~~~ 425 (480)
T PHA02790 349 LLKPRCNPAVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR--NAEFYCESSN 425 (480)
T ss_pred CCCCCcccEEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC--ceEEecCCCC
Confidence 11111 11122 22577778877653 477888876543221111111111122234566666663 3567887655
Q ss_pred eeecccccCC-CeeeeEEecCCCEEEEEEcC-----CeEEEEEcCCC
Q 001472 258 ICHDSVDMGW-STLGDLCINDGKLLGCSFYR-----NSVGIWVADVS 298 (1072)
Q Consensus 258 ~~~~~l~~~~-s~i~~l~spDGk~LAsgs~D-----GsVrIWDlds~ 298 (1072)
.....-+... .....+...+|++.++|+.+ ..+.+||....
T Consensus 426 ~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 426 TWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 4433222211 11122344578888888754 34666665533
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.70 E-value=2.9 Score=50.92 Aligned_cols=301 Identities=14% Similarity=0.092 Sum_probs=148.3
Q ss_pred CCCeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCC-CCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeE
Q 001472 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLS-SPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMV 93 (1072)
Q Consensus 15 sg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs-~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i 93 (1072)
...|..+.+...| .+.+|+.|| +..||..+++.++.-.... ..|..+.-+-+|. |.+|+.+| |++.+.+..+..
T Consensus 164 d~~V~aLv~D~~g--~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~s 238 (671)
T COG3292 164 DTPVVALVFDANG--RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRAS 238 (671)
T ss_pred CccceeeeeeccC--cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhcccc
Confidence 3567778888776 577788887 6677877777665443333 5566666555554 67777777 777776552221
Q ss_pred EEEe-CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE-Eec--CCCCeEEEEEcCCCCEEEEEecCCeEEEE
Q 001472 94 RTLT-GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHT-YKG--HTRGINTIRFTPDGRWVVSGGFDNVVKVW 169 (1072)
Q Consensus 94 ~tl~-~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~-l~~--h~~~VtsLafSPDG~~LaTGS~DGsI~IW 169 (1072)
.... -..+.|..+.-..+| .+-.|+.+|-. .+.......... .+. ....|.++....+|. |.+++.+|.+.+-
T Consensus 239 n~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~-r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~ 315 (671)
T COG3292 239 NWGPMLPSGNILLLVQDAQG-ELWIGTENGLW-RTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYL 315 (671)
T ss_pred ccCCCCcchheeeeecccCC-CEEEeecccce-eEecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEe
Confidence 1111 112334333333333 35555555533 233333322211 111 223456666666776 6667767665554
Q ss_pred ECCCCceEEEeeecCCce-EEEEEcC--CCcEEEEEECCCeEEEEECCCCcEEEeeCC-CCCCeEEEEEeCCCCEEEEEE
Q 001472 170 DLTAGKLLHDFKFHEGHI-RSIDFHP--LEFLLATGSADRTVKFWDLETFELIGSTRP-EVTGVHAITFHPDGRTLFSGF 245 (1072)
Q Consensus 170 Dl~tgk~i~~~~~h~g~I-tsLafSP--dg~lLaTgS~DGtIrIWDl~tge~i~~~~~-h~~~VtsIafSPDG~~LasGs 245 (1072)
+- .......+...++.+ ..++..| .+..+-....-|.+.+-+-.++..+..... -...|+.+++..+|...+...
T Consensus 316 ~a-~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~ 394 (671)
T COG3292 316 TA-DWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSM 394 (671)
T ss_pred cc-hhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEec
Confidence 42 222222222222221 1122222 111222222223444445455555443222 223467777777777766666
Q ss_pred CCcEEEEEecC-CeeecccccC-C-CeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceee-eecCCCCCCCCCeeEEEEC
Q 001472 246 DDNLKVYSWEP-VICHDSVDMG-W-STLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEP-YGVGAPEPDQSICTEVKFN 321 (1072)
Q Consensus 246 dg~I~Vwd~~s-~~~~~~l~~~-~-s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~-~~v~~~~~~~~~ItsVaFS 321 (1072)
.+++..|+-+. ...+...... . ......--++++ |..|+.+|-++. +........ +..+......+.+..+..-
T Consensus 395 q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~ 472 (671)
T COG3292 395 QNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLG 472 (671)
T ss_pred ccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-CccccchhcccccccCcCCcchhhhhccC
Confidence 66777777666 2222222211 1 222222336777 667777775443 222222222 2222212234557778888
Q ss_pred CCCCc
Q 001472 322 PPGSH 326 (1072)
Q Consensus 322 PDGs~ 326 (1072)
|+|.-
T Consensus 473 ~~g~L 477 (671)
T COG3292 473 PDGRL 477 (671)
T ss_pred CCCce
Confidence 88884
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.028 Score=69.89 Aligned_cols=175 Identities=17% Similarity=0.237 Sum_probs=94.1
Q ss_pred EecCCCCeEEEEEecCCCcEEEEEECCCeEEEEECC--CCceE-----EEeeCCCCCeEEEEEcC---CCCEEEEEEcCC
Q 001472 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIG--KPTAL-----MSLCGLSSPVDSVAFDS---AEVLVLAGASTG 80 (1072)
Q Consensus 11 L~gHsg~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~--t~~~l-----~sl~~hs~~ItsLafSP---dG~~LatGS~DG 80 (1072)
++|..|.|..+.|-......+. -.-|.+.+|++. .|+.. ........++.-+.|+| +..++.++-.+|
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 4567788888887543222222 334678999873 23322 22233344555666665 667888888888
Q ss_pred eEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 001472 81 VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSG 160 (1072)
Q Consensus 81 sI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTG 160 (1072)
.|.+..+..... ..+.+|...+..++|...|-.++.+ ++|||..|+.+
T Consensus 206 ~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~-------------------------------lSpDGtv~a~a 253 (1283)
T KOG1916|consen 206 EIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS-------------------------------LSPDGTVFAWA 253 (1283)
T ss_pred ceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-------------------------------eCCCCcEEEEe
Confidence 888887765432 3334577666666654333211111 55666666666
Q ss_pred ecCCeEEEEECC-----CCceEEEeeecCC-ceEEEEEcCC-------C--cEEEEEE-CCCeEEEEECCCCcEE
Q 001472 161 GFDNVVKVWDLT-----AGKLLHDFKFHEG-HIRSIDFHPL-------E--FLLATGS-ADRTVKFWDLETFELI 219 (1072)
Q Consensus 161 S~DGsI~IWDl~-----tgk~i~~~~~h~g-~ItsLafSPd-------g--~lLaTgS-~DGtIrIWDl~tge~i 219 (1072)
+.||.+.+|.+. ...+++.++.|++ +-.|..|+.+ + .++++++ .+..+++|....++++
T Consensus 254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 666655555432 2233444444442 2222223221 1 2333333 4567899988877776
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.036 Score=60.07 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=58.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEE-EEecCCCCeEE-EEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecC-CceE
Q 001472 112 GEFFASGCMDTNLKIWDIRKKGCIH-TYKGHTRGINT-IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE-GHIR 188 (1072)
Q Consensus 112 g~~LaSgs~DGsI~IWDlrtgk~v~-~l~~h~~~Vts-LafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~-g~It 188 (1072)
+..+++|+.+|.|++|......... .+......|.+ +.-..++.+.++++.+|.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 5678999999999999876222111 11111122222 2333356688999999999999998887766555454 2333
Q ss_pred EEEEcCCCcEEEEE--ECCCeEEEEECC
Q 001472 189 SIDFHPLEFLLATG--SADRTVKFWDLE 214 (1072)
Q Consensus 189 sLafSPdg~lLaTg--S~DGtIrIWDl~ 214 (1072)
.+..+..+.+++.+ +.|..++.|++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchh
Confidence 33333333344444 444444444443
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.98 Score=54.78 Aligned_cols=177 Identities=11% Similarity=0.018 Sum_probs=85.1
Q ss_pred cEEEEEECCC-----eEEEEECCCCceEEE--eeCCCCCeEEEEEcCCCCEEEEEEcC--CeEEEEEcCCCeeEE--EEe
Q 001472 29 RFLITGGDDQ-----KVNLWAIGKPTALMS--LCGLSSPVDSVAFDSAEVLVLAGAST--GVIKLWDLEESKMVR--TLT 97 (1072)
Q Consensus 29 ~lLaTGs~DG-----tV~IWDl~t~~~l~s--l~~hs~~ItsLafSPdG~~LatGS~D--GsI~IWDl~tgk~i~--tl~ 97 (1072)
.++++||.++ .+..||..+...... +.........+ .-+|...++||.+ ..+..||..+++-.. .+.
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 5677777643 466777765432221 11111111122 2356677777754 357788876553221 111
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECC
Q 001472 98 GHKSNCTAVEFHPFGEFFASGCMDT---NLKIWDIRKKGCIHT--YKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172 (1072)
Q Consensus 98 ~h~~~VtsLafSPdg~~LaSgs~DG---sI~IWDlrtgk~v~~--l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~ 172 (1072)
...... +++ .-+|+.++.||.++ .+..||..+..-... +....... +++ .-+|++.+.| |.+.+||..
T Consensus 351 ~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp~ 423 (480)
T PHA02790 351 KPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVG---RNAEFYCES 423 (480)
T ss_pred CCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEEC---CceEEecCC
Confidence 111111 122 22577777777653 467888776543221 11111111 222 2256656665 357789987
Q ss_pred CCceEEE--eeecCCceEEEEEcCCCcEEEEEECC-----CeEEEEECCCC
Q 001472 173 AGKLLHD--FKFHEGHIRSIDFHPLEFLLATGSAD-----RTVKFWDLETF 216 (1072)
Q Consensus 173 tgk~i~~--~~~h~g~ItsLafSPdg~lLaTgS~D-----GtIrIWDl~tg 216 (1072)
+++-... +........ ++. -++.+.++||.+ ..+..||..+.
T Consensus 424 ~~~W~~~~~m~~~r~~~~-~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 424 SNTWTLIDDPIYPRDNPE-LII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCcEeEcCCCCCCccccE-EEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 7654322 111112222 222 256777777754 24666666654
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=94.62 E-value=11 Score=45.02 Aligned_cols=89 Identities=15% Similarity=0.190 Sum_probs=57.9
Q ss_pred EEEEcCCCCEEEEEEcCCeEEE---EEcC-----CCeeEEEEeC---C--CCCeEEEEEcC-----------CCCEEEEE
Q 001472 63 SVAFDSAEVLVLAGASTGVIKL---WDLE-----ESKMVRTLTG---H--KSNCTAVEFHP-----------FGEFFASG 118 (1072)
Q Consensus 63 sLafSPdG~~LatGS~DGsI~I---WDl~-----tgk~i~tl~~---h--~~~VtsLafSP-----------dg~~LaSg 118 (1072)
.++.+|++.+|+.+..+..+.+ |+.. .+.......+ + .+.|+++.|.| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5678899999999877665554 5331 1122222111 1 15688877754 34689999
Q ss_pred eCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 001472 119 CMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP 152 (1072)
Q Consensus 119 s~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSP 152 (1072)
..+|.|++|.- +|..+..-.-|..+|..+.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999984 6666655555777777777643
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=94.46 E-value=16 Score=44.56 Aligned_cols=250 Identities=9% Similarity=0.045 Sum_probs=122.2
Q ss_pred cCCCCEEEEEEcCCeEEEEEcCCCe---eEEEEeCCCCCeEEEEEcCCC-CEEEEEeC--CCeEEEEECCCCeEEEEEec
Q 001472 67 DSAEVLVLAGASTGVIKLWDLEESK---MVRTLTGHKSNCTAVEFHPFG-EFFASGCM--DTNLKIWDIRKKGCIHTYKG 140 (1072)
Q Consensus 67 SPdG~~LatGS~DGsI~IWDl~tgk---~i~tl~~h~~~VtsLafSPdg-~~LaSgs~--DGsI~IWDlrtgk~v~~l~~ 140 (1072)
..++..++.+..+|.++...+.... .+..+..-.....++.+..+| .+|++|+. |+.++.|....-..+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 3467789999999999988776433 122222114456677777665 36777765 5566677754445556665
Q ss_pred CCCCeEEEEEcCC----CC------EEEEEe---cCCeEEEEECCCCceEE--E--eeecCC--ceEEEEEcC-CCcEEE
Q 001472 141 HTRGINTIRFTPD----GR------WVVSGG---FDNVVKVWDLTAGKLLH--D--FKFHEG--HIRSIDFHP-LEFLLA 200 (1072)
Q Consensus 141 h~~~VtsLafSPD----G~------~LaTGS---~DGsI~IWDl~tgk~i~--~--~~~h~g--~ItsLafSP-dg~lLa 200 (1072)
.-++|..+++... .. .|++++ .+|.|+++. .|-... . .....+ .++.+.... ++.+|+
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv 375 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLV 375 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEEE
Confidence 4568888888531 11 455543 467888874 332222 1 111222 233333322 245777
Q ss_pred EEECCCeEEEEECC---CCcEEEee-----CCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCCeeecccccCCCeeee
Q 001472 201 TGSADRTVKFWDLE---TFELIGST-----RPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGD 272 (1072)
Q Consensus 201 TgS~DGtIrIWDl~---tge~i~~~-----~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~~s~i~~ 272 (1072)
.+..+ .-+++.+. ..+.+... ......+..-.+. +..++=-...+|++.+.................-.
T Consensus 376 ~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~ 452 (504)
T PF10433_consen 376 LSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIV 452 (504)
T ss_dssp EEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---S
T ss_pred EEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEE
Confidence 66655 44455553 34443222 1111122222222 44555555666788876655544333222222223
Q ss_pred EEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCC-CCCCCCCeeEEEECC
Q 001472 273 LCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGA-PEPDQSICTEVKFNP 322 (1072)
Q Consensus 273 l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~-~~~~~~~ItsVaFSP 322 (1072)
.++.++.+++.+..++.+.++.++........... .......+.|+..+|
T Consensus 453 ~a~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 453 AASINDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEEESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEECCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 33345566666667889999988777664333211 011456778877766
|
... |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.24 E-value=13 Score=42.65 Aligned_cols=206 Identities=13% Similarity=0.152 Sum_probs=116.9
Q ss_pred CeEEEEEecCCCcEEEEEECCCeEEEEECC------CCce-EEEeeC-----CCCCeEEEEEcCCCC------------E
Q 001472 17 NVNCISIGKKACRFLITGGDDQKVNLWAIG------KPTA-LMSLCG-----LSSPVDSVAFDSAEV------------L 72 (1072)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~------t~~~-l~sl~~-----hs~~ItsLafSPdG~------------~ 72 (1072)
.-+.|+|+|.+ .+-++....+...+||.. ..+. ...+.. .....+.+.|+.... .
T Consensus 24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 45789999988 555666667889999985 2222 233331 234577788874333 3
Q ss_pred EEEEEcCCeEEEEEcCCCee-----EEEEe-CCCCC-eEEEEEcC--CCCEEEEEe-CCCeEEEEECCCCeEEEE---Ee
Q 001472 73 VLAGASTGVIKLWDLEESKM-----VRTLT-GHKSN-CTAVEFHP--FGEFFASGC-MDTNLKIWDIRKKGCIHT---YK 139 (1072)
Q Consensus 73 LatGS~DGsI~IWDl~tgk~-----i~tl~-~h~~~-VtsLafSP--dg~~LaSgs-~DGsI~IWDlrtgk~v~~---l~ 139 (1072)
++.++.||+|.-|...-+.. ...+. ..... -..+++.. .+.+|+.+. ..++|.+||-. ...+.. +.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~g~F~ 181 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLPGSFI 181 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCCCCcc
Confidence 57778899999998532221 11222 11122 33455543 355666553 46889999843 221111 11
Q ss_pred cC-----CCC--e---------EEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeee--cCCceEEEEEcC------C
Q 001472 140 GH-----TRG--I---------NTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF--HEGHIRSIDFHP------L 195 (1072)
Q Consensus 140 ~h-----~~~--V---------tsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~--h~g~ItsLafSP------d 195 (1072)
.. -.+ | +...-.+++..=+.|-.-|.|-+||+ .|..++.+.. .-...+.|+..| .
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 00 000 1 11111111111222333468999997 4777777741 223456677765 3
Q ss_pred CcEEEEEECCCeEEEEECCCCcEEEeeCCC
Q 001472 196 EFLLATGSADRTVKFWDLETFELIGSTRPE 225 (1072)
Q Consensus 196 g~lLaTgS~DGtIrIWDl~tge~i~~~~~h 225 (1072)
+.+|+--..||+|..||..+++.+..+...
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~ 290 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLDP 290 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecCC
Confidence 567776677999999999999888776654
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.076 Score=57.61 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=59.0
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCeeE-EEEeCCCCCeEEE-EEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeE
Q 001472 69 AEVLVLAGASTGVIKLWDLEESKMV-RTLTGHKSNCTAV-EFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGIN 146 (1072)
Q Consensus 69 dG~~LatGS~DGsI~IWDl~tgk~i-~tl~~h~~~VtsL-afSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~Vt 146 (1072)
-+..+++|+.+|.|.+|.+...... ..+......|.++ .-..++.+.++++.+|.|+.|++.-.+.+.....|..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~--- 145 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF--- 145 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccC---
Confidence 3567899999999999998632111 1111122233322 2233456889999999999999988887776665652
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCC
Q 001472 147 TIRFTPDGRWVVSGGFDNVVKVWDLTAG 174 (1072)
Q Consensus 147 sLafSPDG~~LaTGS~DGsI~IWDl~tg 174 (1072)
-++..+++.+.++.|.+|++...
T Consensus 146 -----~~~e~~ivv~sd~~i~~a~~S~d 168 (238)
T KOG2444|consen 146 -----ESGEELIVVGSDEFLKIADTSHD 168 (238)
T ss_pred -----CCcceeEEecCCceEEeeccccc
Confidence 12333444444555555544433
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.18 E-value=8.4 Score=49.21 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001472 59 SPVDSVAFDSAEVLVLAGASTGVIKLWDL 87 (1072)
Q Consensus 59 ~~ItsLafSPdG~~LatGS~DGsI~IWDl 87 (1072)
..|..+.++++|.+|+..|..| |.|..+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 4588899999999999988766 444444
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=94.11 E-value=10 Score=43.79 Aligned_cols=221 Identities=15% Similarity=0.154 Sum_probs=110.6
Q ss_pred CeEEEEEecCCCcEEEEEECCCeEEEEECCCCce---EEEe----eCCCCCeEEEEEcCC---CCEEEEEEc-C------
Q 001472 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTA---LMSL----CGLSSPVDSVAFDSA---EVLVLAGAS-T------ 79 (1072)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~---l~sl----~~hs~~ItsLafSPd---G~~LatGS~-D------ 79 (1072)
..+.|+|.||| .+|+ +...|.|.+++ ..+.. +..+ .........++|+|+ ..+|++... .
T Consensus 3 ~P~~~a~~pdG-~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDG-RLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTS-CEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCC-cEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 45789999998 6554 56699999999 34433 2222 233467889999994 334444333 1
Q ss_pred --CeEEEEEcCCC-------ee-EEEEeC---CCCCeEEEEEcCCCCEEEEEeCC-------------CeEEEEECCCCe
Q 001472 80 --GVIKLWDLEES-------KM-VRTLTG---HKSNCTAVEFHPFGEFFASGCMD-------------TNLKIWDIRKKG 133 (1072)
Q Consensus 80 --GsI~IWDl~tg-------k~-i~tl~~---h~~~VtsLafSPdg~~LaSgs~D-------------GsI~IWDlrtgk 133 (1072)
..|.-|.+..+ +. +..+.. ....-..|.|.|||.++++.+.. |.|.-.+.. ++
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~ 158 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GS 158 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SS
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-Cc
Confidence 24555555433 11 122222 23345679999999766655433 233333322 11
Q ss_pred E-------------EEEE-ecCCCCeEEEEEcCC-CCEEEEE-ecCC--eEEEEECCCC---------------------
Q 001472 134 C-------------IHTY-KGHTRGINTIRFTPD-GRWVVSG-GFDN--VVKVWDLTAG--------------------- 174 (1072)
Q Consensus 134 ~-------------v~~l-~~h~~~VtsLafSPD-G~~LaTG-S~DG--sI~IWDl~tg--------------------- 174 (1072)
. ...+ .++. ....++|+|. |.++++= +.++ .|.+. ..|
T Consensus 159 ~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i--~~G~nYGWP~~~~~~~~~~~~~~~ 235 (331)
T PF07995_consen 159 IPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRI--EPGGNYGWPYCEGGPKYSGPPIGD 235 (331)
T ss_dssp B-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE---TT-B--TTTBSSSCSTTSS-ECT
T ss_pred CCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEe--ccCCcCCCCCCcCCCCCCCCcccc
Confidence 0 0001 1122 2568999998 6544431 1222 23332 111
Q ss_pred --------ceEEEeeecCCceEEEEEcC-------CCcEEEEEECCCeEEEEECCCCcEEE---e-eCCCCCCeEEEEEe
Q 001472 175 --------KLLHDFKFHEGHIRSIDFHP-------LEFLLATGSADRTVKFWDLETFELIG---S-TRPEVTGVHAITFH 235 (1072)
Q Consensus 175 --------k~i~~~~~h~g~ItsLafSP-------dg~lLaTgS~DGtIrIWDl~tge~i~---~-~~~h~~~VtsIafS 235 (1072)
.++..+. +...+..+.|.. .|.+++.....+.|....+.....+. . +......+..+++.
T Consensus 236 ~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~ 314 (331)
T PF07995_consen 236 APSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQG 314 (331)
T ss_dssp GSS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEE
T ss_pred ccCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEc
Confidence 1222233 234456666653 34556555556678777776443221 2 22233368899999
Q ss_pred CCCCEEEEEE
Q 001472 236 PDGRTLFSGF 245 (1072)
Q Consensus 236 PDG~~LasGs 245 (1072)
|||.++++..
T Consensus 315 pDG~Lyv~~d 324 (331)
T PF07995_consen 315 PDGALYVSDD 324 (331)
T ss_dssp TTSEEEEEE-
T ss_pred CCCeEEEEEC
Confidence 9988777755
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.09 E-value=2.2 Score=46.87 Aligned_cols=133 Identities=15% Similarity=0.188 Sum_probs=84.7
Q ss_pred CCeEEEEEcCCCCEEEEEEc----------CCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEE-EeCCCeEEEE
Q 001472 59 SPVDSVAFDSAEVLVLAGAS----------TGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFAS-GCMDTNLKIW 127 (1072)
Q Consensus 59 ~~ItsLafSPdG~~LatGS~----------DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaS-gs~DGsI~IW 127 (1072)
.....-..+|+|+++ .|.. .|.++.|-.. ..+..+...-.--..++|+.+.+.|+. -+.+-.|.-|
T Consensus 109 nR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred cccccCccCCCCcee-eeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 345556678999984 4432 2445555432 112222222233356889887775554 4556678778
Q ss_pred E--CCCCe-----EEEEEec----CCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcC
Q 001472 128 D--IRKKG-----CIHTYKG----HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHP 194 (1072)
Q Consensus 128 D--lrtgk-----~v~~l~~----h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSP 194 (1072)
| ..+|. .+..++. .....-.++...+|++.++.-..|+|..+|..+|+.+.+++.....|+++||--
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 7 44443 2333322 111233456677889888888999999999999999999998888999999964
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=94.02 E-value=11 Score=45.78 Aligned_cols=150 Identities=19% Similarity=0.231 Sum_probs=83.6
Q ss_pred EEEEE---EcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC---e
Q 001472 72 LVLAG---ASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRG---I 145 (1072)
Q Consensus 72 ~LatG---S~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~---V 145 (1072)
+++.. ...+...++|. .|.....+.........+.+.++|.+++... +.++.+|+- |+.+..+...... =
T Consensus 117 ~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~H 192 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFH 192 (477)
T ss_dssp EEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-
T ss_pred EEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccc
Confidence 44444 24567777785 4666666553332222267788898777654 789999974 6666666543322 3
Q ss_pred EEEEEcCCCCEEEEEec-------------CCeEEEEECCCCceEEEeee--cC-------------------------C
Q 001472 146 NTIRFTPDGRWVVSGGF-------------DNVVKVWDLTAGKLLHDFKF--HE-------------------------G 185 (1072)
Q Consensus 146 tsLafSPDG~~LaTGS~-------------DGsI~IWDl~tgk~i~~~~~--h~-------------------------g 185 (1072)
+.+.+.|+|++|+.+.. .-.|..+| .+|+.+..+.. |- -
T Consensus 193 HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~ 271 (477)
T PF05935_consen 193 HDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWL 271 (477)
T ss_dssp S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS-
T ss_pred cccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCcc
Confidence 56788899999988772 12467777 88888777542 10 1
Q ss_pred ceEEEEEcC-CCcEEEEEECCCeEEEEECCCCcEEEeeCCCC
Q 001472 186 HIRSIDFHP-LEFLLATGSADRTVKFWDLETFELIGSTRPEV 226 (1072)
Q Consensus 186 ~ItsLafSP-dg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~ 226 (1072)
.+.++.+.+ ++.+|+++-.-..|..+|..+++....+..+.
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 267889988 55566655555589999988888877776553
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.85 E-value=2.5 Score=52.83 Aligned_cols=201 Identities=12% Similarity=0.077 Sum_probs=99.4
Q ss_pred CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE----ecCCCCeEEEEEcCCCC
Q 001472 80 GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY----KGHTRGINTIRFTPDGR 155 (1072)
Q Consensus 80 GsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l----~~h~~~VtsLafSPDG~ 155 (1072)
-.|+||+. +|..+..+......+-.+.|+.+.. |++...+|.+++|++-.. .+..+ ......|..+.|..+|-
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCce
Confidence 45888886 5666665555555888999997665 555579999999997532 22221 12223455555555664
Q ss_pred EEEEEecCCeEEEEECCCCceEEEeee---cCCceEEEEEcCCC-c--EEEEEE-CCCeEEEEECCCCc-EEEeeCCCCC
Q 001472 156 WVVSGGFDNVVKVWDLTAGKLLHDFKF---HEGHIRSIDFHPLE-F--LLATGS-ADRTVKFWDLETFE-LIGSTRPEVT 227 (1072)
Q Consensus 156 ~LaTGS~DGsI~IWDl~tgk~i~~~~~---h~g~ItsLafSPdg-~--lLaTgS-~DGtIrIWDl~tge-~i~~~~~h~~ 227 (1072)
.+.+ .+|.+.+..-.....+..+.. ..-...|-...+++ . .++-.. ..| ..++-..... ....+....+
T Consensus 141 avlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 141 AVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred EEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCc
Confidence 3333 344444432221212222221 11111122212221 1 111111 111 1112111111 1122223346
Q ss_pred CeEEEEEeCCCCEEEE-EECCcEEEEEecCCeeeccccc--CCCeeeeEEecCCCEEEEEEcCCeEEEEEc
Q 001472 228 GVHAITFHPDGRTLFS-GFDDNLKVYSWEPVICHDSVDM--GWSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1072)
Q Consensus 228 ~VtsIafSPDG~~Las-Gsdg~I~Vwd~~s~~~~~~l~~--~~s~i~~l~spDGk~LAsgs~DGsVrIWDl 295 (1072)
.+..+..||++++|+- ...|.+.+-+.+...+...+.. +..+. -++.++.|..+.+|..
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~---------qm~WcgndaVvl~~e~ 279 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPK---------QMAWCGNDAVVLSWEV 279 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchH---------hceeecCCceEEEEee
Confidence 6889999999999997 4566677777776655444432 22222 2444455566666654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.55 E-value=3.1 Score=51.97 Aligned_cols=195 Identities=8% Similarity=0.127 Sum_probs=104.3
Q ss_pred CeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEE--E--eCCCCCeEEEEEcCCCC
Q 001472 38 QKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRT--L--TGHKSNCTAVEFHPFGE 113 (1072)
Q Consensus 38 GtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~t--l--~~h~~~VtsLafSPdg~ 113 (1072)
-.|+||++ .|..+..+.-....+..+.|+.+.. |++...+|.+++|++-. +.+.. . ......|..+.|..+|-
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCce
Confidence 45788886 4555555554455888999987665 45557899999999853 32222 1 12233466666655553
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEEec-CCCCeEEEEE--cCCCC---EEEEEe-cCCeEEEEECCCCc-eEEEeeecCC
Q 001472 114 FFASGCMDTNLKIWDIRKKGCIHTYKG-HTRGINTIRF--TPDGR---WVVSGG-FDNVVKVWDLTAGK-LLHDFKFHEG 185 (1072)
Q Consensus 114 ~LaSgs~DGsI~IWDlrtgk~v~~l~~-h~~~VtsLaf--SPDG~---~LaTGS-~DGsI~IWDl~tgk-~i~~~~~h~g 185 (1072)
++-..+|.+.+.+-........+.. ......+-+| .+++. .++-.. ..| ..++-...+. ....+....+
T Consensus 141 --avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 141 --AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred --EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCc
Confidence 3334456665554222222333332 1111111222 22221 111111 011 1112111111 1122222345
Q ss_pred ceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCC-CCCeEEEEEeCCC
Q 001472 186 HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPE-VTGVHAITFHPDG 238 (1072)
Q Consensus 186 ~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h-~~~VtsIafSPDG 238 (1072)
.+..+..+|+..+|+.-...|.|.+-+.+..+....+... ......++|..+.
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 6788999999999999999999999998877666555422 2233366776554
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.54 E-value=12 Score=47.78 Aligned_cols=94 Identities=16% Similarity=0.287 Sum_probs=54.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEE
Q 001472 100 KSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK-KGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLH 178 (1072)
Q Consensus 100 ~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrt-gk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~ 178 (1072)
.-.|..+.++|+|.+++..|..| |.|..+.. ...-..+.+....+.|-.+.=+..++ .
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-~------------------- 142 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-T------------------- 142 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc-c-------------------
Confidence 34588899999999999988766 55544432 11112222222223322221111111 0
Q ss_pred EeeecCCceEEEEEcCC---CcEEEEEECCCeEEEEECCCC
Q 001472 179 DFKFHEGHIRSIDFHPL---EFLLATGSADRTVKFWDLETF 216 (1072)
Q Consensus 179 ~~~~h~g~ItsLafSPd---g~lLaTgS~DGtIrIWDl~tg 216 (1072)
..+...|..+.|+|. +..|++-..|+++++||+...
T Consensus 143 --~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 143 --SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred --CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 112345677888886 578888888999999998753
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.8 Score=58.97 Aligned_cols=141 Identities=10% Similarity=-0.057 Sum_probs=89.5
Q ss_pred CeEEEEEcCCCCEEEEE--eCCCeEEEEECCCCeEEE-----EE------ecCCCCeEEEEEcCCCC-EEEEEecCCeEE
Q 001472 102 NCTAVEFHPFGEFFASG--CMDTNLKIWDIRKKGCIH-----TY------KGHTRGINTIRFTPDGR-WVVSGGFDNVVK 167 (1072)
Q Consensus 102 ~VtsLafSPdg~~LaSg--s~DGsI~IWDlrtgk~v~-----~l------~~h~~~VtsLafSPDG~-~LaTGS~DGsI~ 167 (1072)
.|..+...+|+...++. +.+-.|+.||++....-. -+ ........++.|.|.-- ..+.+..|+.|.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 35555556676654443 334479999987533211 11 11233466888988432 345566788888
Q ss_pred EEECCCCce-EEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCC----CCCCeEEEEEeCCCCEEE
Q 001472 168 VWDLTAGKL-LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP----EVTGVHAITFHPDGRTLF 242 (1072)
Q Consensus 168 IWDl~tgk~-i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~----h~~~VtsIafSPDG~~La 242 (1072)
+..+..... +..+. .....++++|+|.|+.+++|...|++.-|-.. ++....+.. ....|.+|+|-....|++
T Consensus 182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 887654332 22222 34457999999999999999999999988765 332222211 135699999998888887
Q ss_pred EE
Q 001472 243 SG 244 (1072)
Q Consensus 243 sG 244 (1072)
+-
T Consensus 260 vy 261 (1405)
T KOG3630|consen 260 VY 261 (1405)
T ss_pred Ee
Confidence 63
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=92.89 E-value=13 Score=42.67 Aligned_cols=105 Identities=12% Similarity=0.176 Sum_probs=52.2
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCeEEE--EEec---CCCC-eEEEEEcCCCCEEEEEecC-----------CeEEE
Q 001472 111 FGEFFASGCMD-----TNLKIWDIRKKGCIH--TYKG---HTRG-INTIRFTPDGRWVVSGGFD-----------NVVKV 168 (1072)
Q Consensus 111 dg~~LaSgs~D-----GsI~IWDlrtgk~v~--~l~~---h~~~-VtsLafSPDG~~LaTGS~D-----------GsI~I 168 (1072)
++++++.|+.+ ..+.+||+.+.+-.. .+.. .... -.+++. -++++++.|+.+ ..|.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence 46667777653 357889987654322 1100 1111 122222 356667777753 24778
Q ss_pred EECCCCceEEEeee-----cCCceEEEEEcCCCcEEEEEECC-------------CeEEEEECCCCcE
Q 001472 169 WDLTAGKLLHDFKF-----HEGHIRSIDFHPLEFLLATGSAD-------------RTVKFWDLETFEL 218 (1072)
Q Consensus 169 WDl~tgk~i~~~~~-----h~g~ItsLafSPdg~lLaTgS~D-------------GtIrIWDl~tge~ 218 (1072)
||..+.+-...-.. ..... +++. -++++++.|+.+ ..|.+||+.+.+-
T Consensus 164 yd~~~~~W~~l~~~~~~~~~r~~~-~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 164 YNIADGKWVQLPDPGENFEKRGGA-GFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW 229 (341)
T ss_pred EECCCCeEeeCCCCCCCCCCCCcc-eEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcE
Confidence 88876643321110 01111 2222 245666655432 3588899887543
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=92.71 E-value=23 Score=40.78 Aligned_cols=183 Identities=15% Similarity=0.152 Sum_probs=86.6
Q ss_pred cEEEEEECC-------CeEEEEECCCCceEEEeeCCC---C----CeEEEEEcCCCCEEEEEEcC-----CeEEEEEcCC
Q 001472 29 RFLITGGDD-------QKVNLWAIGKPTALMSLCGLS---S----PVDSVAFDSAEVLVLAGAST-----GVIKLWDLEE 89 (1072)
Q Consensus 29 ~lLaTGs~D-------GtV~IWDl~t~~~l~sl~~hs---~----~ItsLafSPdG~~LatGS~D-----GsI~IWDl~t 89 (1072)
.+++.|+.+ ..+.+||+.+.+-.. +.... . ....+.+ ++.+++.|+.+ ..+.+||..+
T Consensus 34 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 34 KLYSFGGELKPNEHIDKDLYVFDFNTHTWSI-APANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred EEEEECCccCCCCceeCcEEEEECCCCEEEE-cCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCC
Confidence 566777653 247788876643221 11110 0 1112222 45666676653 3578888876
Q ss_pred CeeEE--EEeC---CCCCeEEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCeEEEEEecCC-----CCeEEE
Q 001472 90 SKMVR--TLTG---HKSNCTAVEFHPFGEFFASGCMD-----------TNLKIWDIRKKGCIHTYKGHT-----RGINTI 148 (1072)
Q Consensus 90 gk~i~--tl~~---h~~~VtsLafSPdg~~LaSgs~D-----------GsI~IWDlrtgk~v~~l~~h~-----~~VtsL 148 (1072)
.+-.. .+.. ........+..-+++.++.|+.+ ..|.+||..+..-.. +.... ..-.++
T Consensus 111 ~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~~~ 189 (341)
T PLN02153 111 NEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGAGF 189 (341)
T ss_pred CEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcceE
Confidence 54221 1110 11111111222346667777653 247788887654321 11110 011122
Q ss_pred EEcCCCCEEEEEecC-------------CeEEEEECCCCceEEEeee---cCC-ceEEEEEcCCCcEEEEEECC------
Q 001472 149 RFTPDGRWVVSGGFD-------------NVVKVWDLTAGKLLHDFKF---HEG-HIRSIDFHPLEFLLATGSAD------ 205 (1072)
Q Consensus 149 afSPDG~~LaTGS~D-------------GsI~IWDl~tgk~i~~~~~---h~g-~ItsLafSPdg~lLaTgS~D------ 205 (1072)
+. -++++++.|+.+ ..|.+||+.+.+-...-.. ... ...+++ .-++.+++.|+..
T Consensus 190 ~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~-~~~~~iyv~GG~~~~~~~~ 267 (341)
T PLN02153 190 AV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHA-VVGKYIIIFGGEVWPDLKG 267 (341)
T ss_pred EE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeE-EECCEEEEECcccCCcccc
Confidence 22 255666655432 3588899887654322110 111 111222 2246777777742
Q ss_pred --------CeEEEEECCCCc
Q 001472 206 --------RTVKFWDLETFE 217 (1072)
Q Consensus 206 --------GtIrIWDl~tge 217 (1072)
..|..||+.+..
T Consensus 268 ~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 268 HLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred ccccccccccEEEEEcCccE
Confidence 257788887644
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.021 Score=67.15 Aligned_cols=142 Identities=13% Similarity=0.161 Sum_probs=100.6
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE-EEEecCCeEEEEECCCCceEE-Eee
Q 001472 104 TAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWV-VSGGFDNVVKVWDLTAGKLLH-DFK 181 (1072)
Q Consensus 104 tsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~L-aTGS~DGsI~IWDl~tgk~i~-~~~ 181 (1072)
....|-+.+..++.++.+..+..|| +.++...... ..+....++|..+|..+ +.+-..+.+.+||+.+..... .+.
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 3456778777788888888899999 4455444443 34456678888877754 445678899999997643211 111
Q ss_pred ecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCc
Q 001472 182 FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN 248 (1072)
Q Consensus 182 ~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~ 248 (1072)
....-.-+.|++.+..++.+...|.+.||+..+...+...-.|...+.+++|.+.+..+..+.+..
T Consensus 116 -g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~ 181 (615)
T KOG2247|consen 116 -GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNT 181 (615)
T ss_pred -CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHH
Confidence 111112278999888999998999999999887776666656778899999999988777665554
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=92.26 E-value=19 Score=40.98 Aligned_cols=106 Identities=13% Similarity=0.189 Sum_probs=53.5
Q ss_pred CCCEEEEEEcC-----CeEEEEEcCCCee---EEEEeCCCCCe--EEEEEcCCCCEEEEEeCC-----CeEEEEECCCCe
Q 001472 69 AEVLVLAGAST-----GVIKLWDLEESKM---VRTLTGHKSNC--TAVEFHPFGEFFASGCMD-----TNLKIWDIRKKG 133 (1072)
Q Consensus 69 dG~~LatGS~D-----GsI~IWDl~tgk~---i~tl~~h~~~V--tsLafSPdg~~LaSgs~D-----GsI~IWDlrtgk 133 (1072)
++..++.|+.+ ..+..||+.+.+- ...+..-.... .+++.. +++.++.|+.. ..+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45666667654 3577777766542 12221111111 122222 46666776642 358888987654
Q ss_pred EEEE--EecCCCCeEEEEEcCCCCEEEEEecCC----eEEEEECCCCce
Q 001472 134 CIHT--YKGHTRGINTIRFTPDGRWVVSGGFDN----VVKVWDLTAGKL 176 (1072)
Q Consensus 134 ~v~~--l~~h~~~VtsLafSPDG~~LaTGS~DG----sI~IWDl~tgk~ 176 (1072)
-... +... ......+..-++++.+.|+.++ .+.+||..+.+-
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 3221 1111 1112222233567777787654 356888877653
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.25 E-value=3.5 Score=44.66 Aligned_cols=172 Identities=10% Similarity=0.058 Sum_probs=99.3
Q ss_pred CCCEEEEEEc--CCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeEEEEEecCCCCe
Q 001472 69 AEVLVLAGAS--TGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFAS-GCMDTNLKIWDIRKKGCIHTYKGHTRGI 145 (1072)
Q Consensus 69 dG~~LatGS~--DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaS-gs~DGsI~IWDlrtgk~v~~l~~h~~~V 145 (1072)
+|.++.+.+. ...|++||+.+|+.+...+-....+..=-...-|+++.. .-.+|.-..||.++.+++..+.- .+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 4555555444 347999999999887765433222221111122443333 34578888999988888777653 3334
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeec--CC---ceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEE
Q 001472 146 NTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH--EG---HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIG 220 (1072)
Q Consensus 146 tsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h--~g---~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~ 220 (1072)
+.++. |++-|+.++....+..-|..+......+... .. .+.-+.|- +|.+.|-.-.+..|...|..+|+.+.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 55554 4555777766677888887765544333321 11 22334443 46555555555666677777777654
Q ss_pred eeCC------------CCCCeEEEEEeCCC-CEEEEE
Q 001472 221 STRP------------EVTGVHAITFHPDG-RTLFSG 244 (1072)
Q Consensus 221 ~~~~------------h~~~VtsIafSPDG-~~LasG 244 (1072)
.+.. +..-.+.|++.|++ +++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 4321 22346788888887 555555
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=92.02 E-value=3.8 Score=51.20 Aligned_cols=110 Identities=15% Similarity=0.222 Sum_probs=72.2
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEe-CCCCCeEEEEEc--CCCCEEEEEeCCCeEEEEECC------
Q 001472 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT-GHKSNCTAVEFH--PFGEFFASGCMDTNLKIWDIR------ 130 (1072)
Q Consensus 60 ~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~-~h~~~VtsLafS--Pdg~~LaSgs~DGsI~IWDlr------ 130 (1072)
.+.-+.-+.-++..++.+....+.|||...+.....-. ...+.|.++.|. |+|+.+++.|..+.|.+|--.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 33444444445555555555689999998887543322 357889999995 588888888889999998531
Q ss_pred ---CCeEEEEE--ecC-CCCeEEEEEcCCCCEEEEEecCCeEEEEEC
Q 001472 131 ---KKGCIHTY--KGH-TRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171 (1072)
Q Consensus 131 ---tgk~v~~l--~~h-~~~VtsLafSPDG~~LaTGS~DGsI~IWDl 171 (1072)
+...+..+ ..+ ..+|.+..|.++|.+++.+ +..+.|+|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 11223332 223 3678999999999755443 457888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=91.85 E-value=28 Score=39.95 Aligned_cols=53 Identities=11% Similarity=0.034 Sum_probs=26.0
Q ss_pred CCCEEEEEEcC-----------CeEEEEEcCCCeeEEEEeCCCCCeEE--EEEcCCCCEEEEEeCC
Q 001472 69 AEVLVLAGAST-----------GVIKLWDLEESKMVRTLTGHKSNCTA--VEFHPFGEFFASGCMD 121 (1072)
Q Consensus 69 dG~~LatGS~D-----------GsI~IWDl~tgk~i~tl~~h~~~Vts--LafSPdg~~LaSgs~D 121 (1072)
++...+.|+.+ ..+..||..+.+-............. .+..-+++.+++|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56667777653 24777887765422211111111111 1212367777877754
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=91.84 E-value=4 Score=51.04 Aligned_cols=112 Identities=17% Similarity=0.203 Sum_probs=74.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEc--CCCCEEEEEecCCeEEEEECC----
Q 001472 100 KSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK-GHTRGINTIRFT--PDGRWVVSGGFDNVVKVWDLT---- 172 (1072)
Q Consensus 100 ~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~-~h~~~VtsLafS--PDG~~LaTGS~DGsI~IWDl~---- 172 (1072)
-....-+.-+.-++.-++.+....+.|||.+.+.....-. ...+.|.++.|. |+|+.+++.|..+.|.+|--.
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3344455555555555554455679999998887443322 346789999986 588889888899999998532
Q ss_pred -----CCceEEEee--ec-CCceEEEEEcCCCcEEEEEECCCeEEEEEC
Q 001472 173 -----AGKLLHDFK--FH-EGHIRSIDFHPLEFLLATGSADRTVKFWDL 213 (1072)
Q Consensus 173 -----tgk~i~~~~--~h-~g~ItsLafSPdg~lLaTgS~DGtIrIWDl 213 (1072)
+...+..+. .+ ..+|.+..|.++|.+++.++ ..+.|+|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 112333332 22 35788999999997766443 57888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=91.51 E-value=26 Score=40.33 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=26.3
Q ss_pred CCCEEEEEeCC-----------CeEEEEECCCCeEEEEEecCCCCeE--EEEEcCCCCEEEEEecC
Q 001472 111 FGEFFASGCMD-----------TNLKIWDIRKKGCIHTYKGHTRGIN--TIRFTPDGRWVVSGGFD 163 (1072)
Q Consensus 111 dg~~LaSgs~D-----------GsI~IWDlrtgk~v~~l~~h~~~Vt--sLafSPDG~~LaTGS~D 163 (1072)
+++.++.|+.+ ..+..||..+..-...-........ +.+..-++++.+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56777777653 2477788776543221111111111 11112467777777754
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=91.33 E-value=11 Score=45.82 Aligned_cols=144 Identities=16% Similarity=0.097 Sum_probs=77.6
Q ss_pred CCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCC---eEEEEEcCCC
Q 001472 36 DDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN---CTAVEFHPFG 112 (1072)
Q Consensus 36 ~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~---VtsLafSPdg 112 (1072)
..+...++|. .|.....+.........+.+.++|.+++... +.+..+|+. |+.+..+...... -..+.+.|+|
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCC
Confidence 4455666664 4455554433222222266778898876654 789999985 6666555432221 3567888999
Q ss_pred CEEEEEeC-------------CCeEEEEECCCCeEEEEEec--CC-------------------------CCeEEEEEcC
Q 001472 113 EFFASGCM-------------DTNLKIWDIRKKGCIHTYKG--HT-------------------------RGINTIRFTP 152 (1072)
Q Consensus 113 ~~LaSgs~-------------DGsI~IWDlrtgk~v~~l~~--h~-------------------------~~VtsLafSP 152 (1072)
++|+.+.. .-.|..+| .+|+.+..+.. |- -.+.++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~ 280 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP 280 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence 99888772 12377777 78887776531 10 1378899988
Q ss_pred -CCCEEEEEecCCeEEEEECCCCceEEEeeecC
Q 001472 153 -DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE 184 (1072)
Q Consensus 153 -DG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~ 184 (1072)
++.+++++-.-..|...|..++++.+.+..+.
T Consensus 281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp TTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 44444444445589999989999888877554
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=91.22 E-value=31 Score=39.22 Aligned_cols=163 Identities=17% Similarity=0.280 Sum_probs=92.8
Q ss_pred eEEEEEcCCCeeEEEEeCC------CCCeEEEEEcCCC-----CEEEEEe-CCCeEEEEECCCCeEEEEEecC-------
Q 001472 81 VIKLWDLEESKMVRTLTGH------KSNCTAVEFHPFG-----EFFASGC-MDTNLKIWDIRKKGCIHTYKGH------- 141 (1072)
Q Consensus 81 sI~IWDl~tgk~i~tl~~h------~~~VtsLafSPdg-----~~LaSgs-~DGsI~IWDlrtgk~v~~l~~h------- 141 (1072)
.|.+||+.+++.++.+.-. .+.+..+.+.... .+++.+. ..+.|.+||+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 7899999999988776532 3456777776522 3444443 3467999999988765544321
Q ss_pred ------------CCCeEEEEEcC---CCCEEEEEecCCeEEEEECCC-----C---------ceEEEeeecCCceEEEEE
Q 001472 142 ------------TRGINTIRFTP---DGRWVVSGGFDNVVKVWDLTA-----G---------KLLHDFKFHEGHIRSIDF 192 (1072)
Q Consensus 142 ------------~~~VtsLafSP---DG~~LaTGS~DGsI~IWDl~t-----g---------k~i~~~~~h~g~ItsLaf 192 (1072)
...+..++.+| +|++|..+...+. ++|-+.+ . ..+..+-...+....+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 12355666655 5666666554332 2332211 1 011222111245677889
Q ss_pred cCCCcEEEEEECCCeEEEEECCC------CcEEEeeCCCCCCeEEEEEeC--CCCEEEEE
Q 001472 193 HPLEFLLATGSADRTVKFWDLET------FELIGSTRPEVTGVHAITFHP--DGRTLFSG 244 (1072)
Q Consensus 193 SPdg~lLaTgS~DGtIrIWDl~t------ge~i~~~~~h~~~VtsIafSP--DG~~LasG 244 (1072)
+++|.++++--..+.|..|+..+ .+.+..-...-..+..+.+.+ +|.+.+..
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 99999999888999999999886 122222222235677888887 55544443
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=90.91 E-value=43 Score=40.28 Aligned_cols=143 Identities=11% Similarity=0.148 Sum_probs=87.3
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCe-----eEEEEeCCCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEECCC--Ce---
Q 001472 69 AEVLVLAGASTGVIKLWDLEESK-----MVRTLTGHKSNCTAVEFHP-----FGEFFASGCMDTNLKIWDIRK--KG--- 133 (1072)
Q Consensus 69 dG~~LatGS~DGsI~IWDl~tgk-----~i~tl~~h~~~VtsLafSP-----dg~~LaSgs~DGsI~IWDlrt--gk--- 133 (1072)
+...|++|+..|.++||+...+. .+.+. .-..+|..+..-. +...||+ -.-..+.||.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34689999999999999986433 22222 2457777776543 2234555 3566788887631 11
Q ss_pred ----EEEEEecCC--CCeEEEEEcC----C-CCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEE
Q 001472 134 ----CIHTYKGHT--RGINTIRFTP----D-GRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATG 202 (1072)
Q Consensus 134 ----~v~~l~~h~--~~VtsLafSP----D-G~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTg 202 (1072)
.+..+..|. .....+++-| . ..++++-+.||.+.+|+-+..-....+.. .--...++|.+.-..++++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 112222222 2234444443 2 35788899999999999654433333332 2223457788888888899
Q ss_pred ECCCeEEEEECC
Q 001472 203 SADRTVKFWDLE 214 (1072)
Q Consensus 203 S~DGtIrIWDl~ 214 (1072)
+.+..|..|...
T Consensus 193 sss~~l~~Yky~ 204 (418)
T PF14727_consen 193 SSSWTLECYKYQ 204 (418)
T ss_pred cCceeEEEecHH
Confidence 888888888753
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=90.86 E-value=35 Score=39.07 Aligned_cols=228 Identities=8% Similarity=0.010 Sum_probs=106.2
Q ss_pred CCCEEEEEEcCCeEEEEEcCC--CeeEEEEeCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeE-----------
Q 001472 69 AEVLVLAGASTGVIKLWDLEE--SKMVRTLTGHKSNCTAVEFHPFGEFFASGC-MDTNLKIWDIRKKGC----------- 134 (1072)
Q Consensus 69 dG~~LatGS~DGsI~IWDl~t--gk~i~tl~~h~~~VtsLafSPdg~~LaSgs-~DGsI~IWDlrtgk~----------- 134 (1072)
++++|+.|+.+| |++.++.. ++..+.+ +...|+++...+..+.|++-+ ....++.|++..-..
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 346899999999 55555654 3344433 466899999998777665544 344599999842211
Q ss_pred -----EEEEecCCCCeEEEEEcCCC-CEEEEEecCCeEEEEECCCC----ceEEEe---e-ecCCceEEEEEcCC--CcE
Q 001472 135 -----IHTYKGHTRGINTIRFTPDG-RWVVSGGFDNVVKVWDLTAG----KLLHDF---K-FHEGHIRSIDFHPL--EFL 198 (1072)
Q Consensus 135 -----v~~l~~h~~~VtsLafSPDG-~~LaTGS~DGsI~IWDl~tg----k~i~~~---~-~h~g~ItsLafSPd--g~l 198 (1072)
...+ .+..+...+.+.... ..++++.....|.+|..... .....+ . ....++..+..+++ ...
T Consensus 89 ~~~~~~~~~-~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (302)
T smart00036 89 IRKNVLTKI-PDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPG 167 (302)
T ss_pred ccccceEeC-CcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceE
Confidence 1111 233333333333222 23344444566666544322 112111 0 11223333333333 456
Q ss_pred EEEEECCCeEEEEECCC--CcEEE---e--eCCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCCeeecccccCCCeee
Q 001472 199 LATGSADRTVKFWDLET--FELIG---S--TRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLG 271 (1072)
Q Consensus 199 LaTgS~DGtIrIWDl~t--ge~i~---~--~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~~s~i~ 271 (1072)
|+.|+..+...++++.. ...-. . .........++..-+++.+|++-.+.+ .+.+.............|...-
T Consensus 168 lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~~~~~-v~Vn~~G~~~~r~~~l~w~~~p 246 (302)
T smart00036 168 ICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCYDEFG-VFVNLYGKRRSRNPILHWEFMP 246 (302)
T ss_pred EEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEECcEE-EEEeCCCCccccceEEEcCCcc
Confidence 77777643344555432 11000 0 001110233344444555555544333 3334332111111122232221
Q ss_pred eEEecCCCEEEEEEcCCeEEEEEcCCCceee
Q 001472 272 DLCINDGKLLGCSFYRNSVGIWVADVSHVEP 302 (1072)
Q Consensus 272 ~l~spDGk~LAsgs~DGsVrIWDlds~~l~~ 302 (1072)
..+.....||+.- .+..|.||++.++.+..
T Consensus 247 ~~~~~~~pyll~~-~~~~ievr~l~~~~l~q 276 (302)
T smart00036 247 ESFAYHSPYLLAF-HDNGIEIRSIKTGELLQ 276 (302)
T ss_pred cEEEEECCEEEEE-cCCcEEEEECCCCceEE
Confidence 2222234555554 45669999998776543
|
Unpublished observations. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.34 Score=60.83 Aligned_cols=210 Identities=13% Similarity=0.179 Sum_probs=114.6
Q ss_pred CeEEEEEcCCCee-EEEEeCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECC--CCeE-----EEEEecCCCCeEEEEE
Q 001472 80 GVIKLWDLEESKM-VRTLTGHKSNCTAVEFHP-FGEFFASGCMDTNLKIWDIR--KKGC-----IHTYKGHTRGINTIRF 150 (1072)
Q Consensus 80 GsI~IWDl~tgk~-i~tl~~h~~~VtsLafSP-dg~~LaSgs~DGsI~IWDlr--tgk~-----v~~l~~h~~~VtsLaf 150 (1072)
+-+++-+....-. -..+++..+.+-.+.|-. +...+. -.-|.+.+||+. .|+. ++........+.-+.|
T Consensus 111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~w 188 (1283)
T KOG1916|consen 111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSW 188 (1283)
T ss_pred hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeee
Confidence 4456655443211 122345667777777743 222222 233678899875 3432 2223334445566777
Q ss_pred cC---CCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEE-----------EEcCCCcEEEEEECCCeEEEEECC--
Q 001472 151 TP---DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSI-----------DFHPLEFLLATGSADRTVKFWDLE-- 214 (1072)
Q Consensus 151 SP---DG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsL-----------afSPdg~lLaTgS~DGtIrIWDl~-- 214 (1072)
.| +.-++.++..++.|++..+..... ..|..|...+..+ .++|||..+++++.||.+++|.+.
T Consensus 189 cp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~ 267 (1283)
T KOG1916|consen 189 CPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYIT 267 (1283)
T ss_pred cccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeee
Confidence 66 566788888888888776543321 2223344333322 368999999999999998888764
Q ss_pred ---CCcEEEeeCCCCCC-eEEEEEeCC-------C--CEEEEEECC--cEEEEEecCCeeecccccCCCeeeeEEecCCC
Q 001472 215 ---TFELIGSTRPEVTG-VHAITFHPD-------G--RTLFSGFDD--NLKVYSWEPVICHDSVDMGWSTLGDLCINDGK 279 (1072)
Q Consensus 215 ---tge~i~~~~~h~~~-VtsIafSPD-------G--~~LasGsdg--~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk 279 (1072)
.-.++.....|.+. -.|.-|+.. | .+++++.|- .+++|.-....|+ ++..-..+..+.-+||+
T Consensus 268 g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl--l~~~~d~v~iV~p~~~~ 345 (1283)
T KOG1916|consen 268 GKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL--LDKLIDGVQIVGPHDGE 345 (1283)
T ss_pred ccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh--hhhcccceEeecCCCcc
Confidence 22344555555532 222223321 2 234455543 4899988888876 22222223333334443
Q ss_pred E------------EEEEEcCCeEEEEE
Q 001472 280 L------------LGCSFYRNSVGIWV 294 (1072)
Q Consensus 280 ~------------LAsgs~DGsVrIWD 294 (1072)
+ ++....++.|.+|-
T Consensus 346 v~~~~~~~~~~~~~v~r~v~~~i~~~q 372 (1283)
T KOG1916|consen 346 VTDLSMCQWMTTRLVSRSVDGTIKIWQ 372 (1283)
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHhh
Confidence 2 22345678888883
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=90.70 E-value=27 Score=40.90 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=25.5
Q ss_pred CCCEEEEEEcC-----------CeEEEEEcCCCeeEEEEeCCCCCe--EEEEEcCCCCEEEEEeCC
Q 001472 69 AEVLVLAGAST-----------GVIKLWDLEESKMVRTLTGHKSNC--TAVEFHPFGEFFASGCMD 121 (1072)
Q Consensus 69 dG~~LatGS~D-----------GsI~IWDl~tgk~i~tl~~h~~~V--tsLafSPdg~~LaSgs~D 121 (1072)
++.+.+.|+.. ..+..||..+.+-...-....... .++...-++++++.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 56666666653 247778877654222111001111 112221367777777754
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.68 E-value=68 Score=42.18 Aligned_cols=157 Identities=12% Similarity=0.162 Sum_probs=85.2
Q ss_pred EEEEECCCCceEEEeeecCC----ceEEEEEcCCCc--EEEEEE-----------CCCeEEEEECC-CCcEEEeeCCCCC
Q 001472 166 VKVWDLTAGKLLHDFKFHEG----HIRSIDFHPLEF--LLATGS-----------ADRTVKFWDLE-TFELIGSTRPEVT 227 (1072)
Q Consensus 166 I~IWDl~tgk~i~~~~~h~g----~ItsLafSPdg~--lLaTgS-----------~DGtIrIWDl~-tge~i~~~~~h~~ 227 (1072)
|.++|..+++.+..+..... .+..+.|+..+. ++++|+ .+|.++.|++- .++.+.-+....-
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 66666666665555442222 244555554332 344443 23456777653 3443333322222
Q ss_pred CeEEEEEeCCCCEEEEEECCcEEEEEecCCeeecccccCCCeeeeEE-ecCCCEEEEEEcCCeEEE--EEcCCCceeeee
Q 001472 228 GVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLC-INDGKLLGCSFYRNSVGI--WVADVSHVEPYG 304 (1072)
Q Consensus 228 ~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~-spDGk~LAsgs~DGsVrI--WDlds~~l~~~~ 304 (1072)
+-.-.++.|-+.++++|-...+++|++...+..........+..... -..+..+++|...-.|.+ |+-+...+..+.
T Consensus 935 ~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~~fa 1014 (1205)
T KOG1898|consen 935 PGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLIVFA 1014 (1205)
T ss_pred CccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEEEEe
Confidence 23345667777799999999999999987666554433331211111 134556666665544544 555555555554
Q ss_pred cCCCCCCCCCeeEEEECCCCC
Q 001472 305 VGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 305 v~~~~~~~~~ItsVaFSPDGs 325 (1072)
- ++....++++.+--++.
T Consensus 1015 d---D~~pR~Vt~~~~lD~~t 1032 (1205)
T KOG1898|consen 1015 D---DPVPRHVTALELLDYDT 1032 (1205)
T ss_pred C---CCccceeeEEEEecCCc
Confidence 2 55566777777766555
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=90.61 E-value=36 Score=38.89 Aligned_cols=230 Identities=11% Similarity=0.006 Sum_probs=111.2
Q ss_pred cEEEEEECCCeEEEEECCCC-ceEEEeeCCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCee--------------
Q 001472 29 RFLITGGDDQKVNLWAIGKP-TALMSLCGLSSPVDSVAFDSAEVLVLAGA-STGVIKLWDLEESKM-------------- 92 (1072)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~-~~l~sl~~hs~~ItsLafSPdG~~LatGS-~DGsI~IWDl~tgk~-------------- 92 (1072)
++|+.|..+|...+. +... .....+. +...|.++...+.-+.|++-+ ....++++++..-..
T Consensus 14 ~~lL~GTe~Gly~~~-~~~~~~~~~kl~-~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~ 91 (302)
T smart00036 14 KWLLVGTEEGLYVLN-ISDQPGTLEKLI-GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRK 91 (302)
T ss_pred cEEEEEeCCceEEEE-cccCCCCeEEec-CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccc
Confidence 689999999955444 5432 2222232 456899999988777665544 344599999832211
Q ss_pred -EEEEeCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCC--e--EEEEE---e-cCCCCeEEEEEcCC--CCEEEEE
Q 001472 93 -VRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKK--G--CIHTY---K-GHTRGINTIRFTPD--GRWVVSG 160 (1072)
Q Consensus 93 -i~tl~~h~~~VtsLafSPdg-~~LaSgs~DGsI~IWDlrtg--k--~v~~l---~-~h~~~VtsLafSPD--G~~LaTG 160 (1072)
....-.+......+.+.... ..++++.....|.+|.+... + ....+ . ....++..+..+++ ...++.|
T Consensus 92 ~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG 171 (302)
T smart00036 92 NVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIG 171 (302)
T ss_pred cceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEE
Confidence 01111233334444443222 13344445566666544321 1 11110 0 01123333333332 4467777
Q ss_pred ecCCeEEEEECCC--CceEE---E--eeecC-CceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEE-eeCCCCCCeEE
Q 001472 161 GFDNVVKVWDLTA--GKLLH---D--FKFHE-GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIG-STRPEVTGVHA 231 (1072)
Q Consensus 161 S~DGsI~IWDl~t--gk~i~---~--~~~h~-g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~-~~~~h~~~Vts 231 (1072)
+..+...++++.. ..... . ..... .++ ++..-+++.+|++ . |....+.|........ ....-.....+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~-~i~~l~~~e~Llc-~-~~~~v~Vn~~G~~~~r~~~l~w~~~p~~ 248 (302)
T smart00036 172 SDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPI-SVVQVPRDEFLLC-Y-DEFGVFVNLYGKRRSRNPILHWEFMPES 248 (302)
T ss_pred EcCCCCeEEEEeecccccccccccccccccccCce-EEEEECCCeEEEE-E-CcEEEEEeCCCCccccceEEEcCCcccE
Confidence 7642344454432 11000 0 01011 233 3333344555543 2 3445555554211111 11111234566
Q ss_pred EEEeCCCCEEEEEECCcEEEEEecCCeeeccccc
Q 001472 232 ITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDM 265 (1072)
Q Consensus 232 IafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~ 265 (1072)
+++. ..+|++-.++.|.|+++.++.....+..
T Consensus 249 ~~~~--~pyll~~~~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 249 FAYH--SPYLLAFHDNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred EEEE--CCEEEEEcCCcEEEEECCCCceEEEEec
Confidence 6766 3677777788899999998876666543
|
Unpublished observations. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=90.54 E-value=32 Score=40.29 Aligned_cols=53 Identities=13% Similarity=0.285 Sum_probs=26.2
Q ss_pred CCCEEEEEeCC-----------CeEEEEECCCCeEEEEEecCCCCe--EEEEEcCCCCEEEEEecC
Q 001472 111 FGEFFASGCMD-----------TNLKIWDIRKKGCIHTYKGHTRGI--NTIRFTPDGRWVVSGGFD 163 (1072)
Q Consensus 111 dg~~LaSgs~D-----------GsI~IWDlrtgk~v~~l~~h~~~V--tsLafSPDG~~LaTGS~D 163 (1072)
++.+++.|+.. ..+..||..+..-...-....... .+....-++++++.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 46667777643 247788877654322111011111 122221467777777754
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=90.23 E-value=59 Score=41.22 Aligned_cols=233 Identities=16% Similarity=0.140 Sum_probs=120.9
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcC-CCeeEEEEeC-CCCCeEEEEEcCC---CCEEEEEeCC-CeEEEEECCCC----
Q 001472 63 SVAFDSAEVLVLAGASTGVIKLWDLE-ESKMVRTLTG-HKSNCTAVEFHPF---GEFFASGCMD-TNLKIWDIRKK---- 132 (1072)
Q Consensus 63 sLafSPdG~~LatGS~DGsI~IWDl~-tgk~i~tl~~-h~~~VtsLafSPd---g~~LaSgs~D-GsI~IWDlrtg---- 132 (1072)
+..++|+.+.+-.|=....|.-|=+. +.+.++.+.- ....|.||..... .++.++|-.+ +.-++..+..+
T Consensus 32 s~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~ 111 (670)
T PF10395_consen 32 SDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGST 111 (670)
T ss_pred ecccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccc
Confidence 33667777777776555555555443 4556665542 3445677766432 2345555333 32333322222
Q ss_pred -------e--EEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEE--Eeee-cCCc-eEEEEEcC-----
Q 001472 133 -------G--CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLH--DFKF-HEGH-IRSIDFHP----- 194 (1072)
Q Consensus 133 -------k--~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~--~~~~-h~g~-ItsLafSP----- 194 (1072)
. ....++ -...|..+.|..+++.+++...+|.|.+||...+.... .... +... +++ +|-+
T Consensus 112 ~~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~ 189 (670)
T PF10395_consen 112 EDGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELE 189 (670)
T ss_pred cccccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccc
Confidence 1 122233 35678999999999999999999999999993332211 2221 1111 111 2222
Q ss_pred -CCcEEEEEEC-C---CeEEEEECC-CCcEEEeeC---CCCCCeEEEEEeC-CCCEEEEEECCcEEEEEecCCeeecccc
Q 001472 195 -LEFLLATGSA-D---RTVKFWDLE-TFELIGSTR---PEVTGVHAITFHP-DGRTLFSGFDDNLKVYSWEPVICHDSVD 264 (1072)
Q Consensus 195 -dg~lLaTgS~-D---GtIrIWDl~-tge~i~~~~---~h~~~VtsIafSP-DG~~LasGsdg~I~Vwd~~s~~~~~~l~ 264 (1072)
...++++.+. + -..+++.+. ....+..+. .+........|+. +|.+... .++.|.+|++........+.
T Consensus 190 ~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~ 268 (670)
T PF10395_consen 190 NGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTIS 268 (670)
T ss_pred cCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEE
Confidence 1234444433 2 246777771 122222221 2222333444443 4544444 77789999987766655544
Q ss_pred cCC------CeeeeEEecCCCEEEEEEcCCeEEEEEcCCCc
Q 001472 265 MGW------STLGDLCINDGKLLGCSFYRNSVGIWVADVSH 299 (1072)
Q Consensus 265 ~~~------s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~ 299 (1072)
... .....+..+..+.+..+ .++.|+++|+....
T Consensus 269 l~~ii~~~~~~~vSl~~~s~nRvLLs-~~nkIyLld~~~~s 308 (670)
T PF10395_consen 269 LPSIIDKESDDLVSLKPPSPNRVLLS-VNNKIYLLDLKFES 308 (670)
T ss_pred echhhccccccceEeecCCCCeEEEE-cCCEEEEEeehhhh
Confidence 331 11222333444444444 47889999975443
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.17 E-value=62 Score=40.85 Aligned_cols=276 Identities=12% Similarity=0.132 Sum_probs=132.7
Q ss_pred EecCCCCeEEEEEecCCCcEEEEEECCCe--EEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEc------CCe-
Q 001472 11 FVAHSANVNCISIGKKACRFLITGGDDQK--VNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS------TGV- 81 (1072)
Q Consensus 11 L~gHsg~Vt~IafSPdg~~lLaTGs~DGt--V~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~------DGs- 81 (1072)
+..+...+..+.|+|+| .+++..+.++. ..+|-+.... .+..+...+....|++++..++.... ++.
T Consensus 55 ~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~ 130 (620)
T COG1506 55 LLTFGGGVSELRWSPDG-SVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGD 130 (620)
T ss_pred ccccCCcccccccCCCC-CEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEEEecccccccCCce
Confidence 55677889999999999 55555553322 3444332221 34445667788899999988877211 232
Q ss_pred ------EEEEEcCCC-ee-----------EEEEeCCCCCeEEEEEcCCCCEEEEEeCCC-------eEEEEECCCCeEEE
Q 001472 82 ------IKLWDLEES-KM-----------VRTLTGHKSNCTAVEFHPFGEFFASGCMDT-------NLKIWDIRKKGCIH 136 (1072)
Q Consensus 82 ------I~IWDl~tg-k~-----------i~tl~~h~~~VtsLafSPdg~~LaSgs~DG-------sI~IWDlrtgk~v~ 136 (1072)
+.+|....+ .. ..........+....+++++..++....+. ...+|...++. +.
T Consensus 131 ~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 209 (620)
T COG1506 131 HLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGE-LE 209 (620)
T ss_pred eeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCc-eE
Confidence 334433333 11 111222345566677777677666654433 23344332333 44
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEec-CC-------eEEEEECCCCceEEEeeecC--CceEEEEE-cCCCcEEEEEEC-
Q 001472 137 TYKGHTRGINTIRFTPDGRWVVSGGF-DN-------VVKVWDLTAGKLLHDFKFHE--GHIRSIDF-HPLEFLLATGSA- 204 (1072)
Q Consensus 137 ~l~~h~~~VtsLafSPDG~~LaTGS~-DG-------sI~IWDl~tgk~i~~~~~h~--g~ItsLaf-SPdg~lLaTgS~- 204 (1072)
.+......+..+.|.++|+.++..+. .. .+.+++.+.++......... .....+.+ -++..+++++..
T Consensus 210 ~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (620)
T COG1506 210 SLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATDG 289 (620)
T ss_pred EEcCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCcccCcHHhccccCCCcEEEEEecC
Confidence 44445556888999999985554332 22 34444422232222011000 00001111 122334444443
Q ss_pred CCeEEEEECCCCc-EEEeeCCCCCCeEEEEEeCCCCEEEEEECC-----cEEEEEecCCeeecccccCCCeeeeEEecCC
Q 001472 205 DRTVKFWDLETFE-LIGSTRPEVTGVHAITFHPDGRTLFSGFDD-----NLKVYSWEPVICHDSVDMGWSTLGDLCINDG 278 (1072)
Q Consensus 205 DGtIrIWDl~tge-~i~~~~~h~~~VtsIafSPDG~~LasGsdg-----~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDG 278 (1072)
.|...++...... ...........+..+.+ ++..+++...+ .+.+|+. ......................
T Consensus 290 ~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~--~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 365 (620)
T COG1506 290 GGSSPLFRVDDLGGGVEGLSGDDGGVPGFDV--DGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKVKLAEP 365 (620)
T ss_pred CCceEEEEEeccCCceeeecCCCceEEEEee--CCCEEEEEecCCCCccceEEEcC--CCceEEeecccccccccccCCc
Confidence 5666666655322 22223333355666655 67776664222 2455543 1111111111111111222344
Q ss_pred CEEEEEEcCC-eEEEEEc
Q 001472 279 KLLGCSFYRN-SVGIWVA 295 (1072)
Q Consensus 279 k~LAsgs~DG-sVrIWDl 295 (1072)
+.+-..+.|| .|.-|-+
T Consensus 366 e~~~~~~~dG~~i~~~l~ 383 (620)
T COG1506 366 EPVTYKSNDGETIHGWLY 383 (620)
T ss_pred eEEEEEcCCCCEEEEEEe
Confidence 5566666666 7777755
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=89.89 E-value=41 Score=38.37 Aligned_cols=106 Identities=12% Similarity=0.124 Sum_probs=53.7
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCeEE---EEEecCCCCe--EEEEEcCCCCEEEEEec-----CCeEEEEECCCCc
Q 001472 111 FGEFFASGCMD-----TNLKIWDIRKKGCI---HTYKGHTRGI--NTIRFTPDGRWVVSGGF-----DNVVKVWDLTAGK 175 (1072)
Q Consensus 111 dg~~LaSgs~D-----GsI~IWDlrtgk~v---~~l~~h~~~V--tsLafSPDG~~LaTGS~-----DGsI~IWDl~tgk 175 (1072)
++..++.|+.+ ..+..||+.+.... ..+..-..+. .+++.. ++++.+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45666777654 35777787665531 2221111111 122222 4666677664 2368889987665
Q ss_pred eEEEeeec-CCceEEEEEcCCCcEEEEEECCC----eEEEEECCCCc
Q 001472 176 LLHDFKFH-EGHIRSIDFHPLEFLLATGSADR----TVKFWDLETFE 217 (1072)
Q Consensus 176 ~i~~~~~h-~g~ItsLafSPdg~lLaTgS~DG----tIrIWDl~tge 217 (1072)
-...-... .......+..-++++.+.|+.++ .+.+||+.+.+
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 33211111 11112222233567777787654 35688887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=89.54 E-value=0.8 Score=38.05 Aligned_cols=35 Identities=14% Similarity=0.250 Sum_probs=30.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE
Q 001472 99 HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC 134 (1072)
Q Consensus 99 h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~ 134 (1072)
....|.+++|+|..++||.|..+|.|.+|.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3456999999999999999999999999998 4443
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.41 E-value=4 Score=49.06 Aligned_cols=135 Identities=14% Similarity=0.113 Sum_probs=89.3
Q ss_pred EEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC--------CEEEEEecCCeEEEEECCC-CceEEEeee----c
Q 001472 117 SGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDG--------RWVVSGGFDNVVKVWDLTA-GKLLHDFKF----H 183 (1072)
Q Consensus 117 Sgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG--------~~LaTGS~DGsI~IWDl~t-gk~i~~~~~----h 183 (1072)
.|+....++-.|+..|+.+..+..|..- -+.|.|+. +.|+ |-.+..|.-.|.+- |..+..... .
T Consensus 485 dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esKdY~t 561 (776)
T COG5167 485 DGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESKDYKT 561 (776)
T ss_pred cCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeehhccc
Confidence 3445567888899999999999877653 67787743 2344 44456666666653 322222111 1
Q ss_pred CCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCcEEEEEec
Q 001472 184 EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWE 255 (1072)
Q Consensus 184 ~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~ 255 (1072)
.....+..-. ...++++|+..|.|++||--.......+.+....|..|..+.+|+++++.+...+.+.|+.
T Consensus 562 Kn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 562 KNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred cccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 1122223222 2458899999999999996544434445556667999999999999999998888887764
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=89.34 E-value=0.99 Score=37.51 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCee
Q 001472 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM 92 (1072)
Q Consensus 58 s~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~ 92 (1072)
...|.+++|+|...+||.|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456899999999999999999999999998 4543
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=89.22 E-value=56 Score=39.06 Aligned_cols=136 Identities=12% Similarity=0.048 Sum_probs=74.3
Q ss_pred ceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCCee-----e
Q 001472 186 HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVIC-----H 260 (1072)
Q Consensus 186 ~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~-----~ 260 (1072)
....+..++++.+++++.....++-||--...-...-......+..+.|.++|.+++++..+.+ ++.-+.+.. .
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f 318 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDF 318 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccce
Confidence 3455667788887776654332333443211001122233456899999999999998877764 444444321 1
Q ss_pred ccccc---CCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeeeecCCCCCCCCCeeEEEECCCCC
Q 001472 261 DSVDM---GWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 261 ~~l~~---~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~~v~~~~~~~~~ItsVaFSPDGs 325 (1072)
..... ........+.+++..+++| .+|.+.... +.+..-... .........+..+.|.++++
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~-~~~~~~~~~ly~v~f~~~~~ 383 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRD-KGADNIAANLYSVKFFDDKK 383 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEc-cccCCCCcceeEEEEcCCCc
Confidence 11111 1234455566676766665 677666664 333322221 11133456788999988766
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.08 E-value=48 Score=38.04 Aligned_cols=151 Identities=11% Similarity=0.095 Sum_probs=95.5
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeC--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--
Q 001472 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG--HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG-- 133 (1072)
Q Consensus 58 s~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~--h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk-- 133 (1072)
..-+..+.++ +++.+.+..+.-++|+|+.+...-..+.. ..+.-.++.. .|++.+++..|.-+.++|+.+..
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence 3445566665 45666666667799999976543322221 1233344444 49999999877668888886543
Q ss_pred -EEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCce---EEEeeecCCceEEEEEcCCCcEEEEEECCCeEE
Q 001472 134 -CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL---LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVK 209 (1072)
Q Consensus 134 -~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~---i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIr 209 (1072)
....+.......+.++.+ |++-..+..|+-+.+.|+..... +.... ....+.++..+++..+++... .-+.
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~--egvl 236 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYD--EGVL 236 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcc--cceE
Confidence 334444444445677776 66777778899999999976542 22222 233678888887776666543 3477
Q ss_pred EEECCCCc
Q 001472 210 FWDLETFE 217 (1072)
Q Consensus 210 IWDl~tge 217 (1072)
+-|....+
T Consensus 237 ivd~s~~s 244 (370)
T COG5276 237 IVDVSGPS 244 (370)
T ss_pred EEecCCCC
Confidence 77777655
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=88.88 E-value=51 Score=38.07 Aligned_cols=142 Identities=17% Similarity=0.276 Sum_probs=85.8
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCe------EEEEEcCC--C--eeE-----EEEeCCCC--------CeEEEEEcCCCCEE
Q 001472 59 SPVDSVAFDSAEVLVLAGASTGV------IKLWDLEE--S--KMV-----RTLTGHKS--------NCTAVEFHPFGEFF 115 (1072)
Q Consensus 59 ~~ItsLafSPdG~~LatGS~DGs------I~IWDl~t--g--k~i-----~tl~~h~~--------~VtsLafSPdg~~L 115 (1072)
+.+..+.|.+++..+++.+.+|. +..+++.. + ..+ ..+....+ ..-+|++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45677888866666666677777 66665543 1 111 11111111 34478887788888
Q ss_pred EEEeCC------CeEEEEECCCCeEEEEEe---------------cCCCCeEEEEEcCCCCEEEEEecC-----C-----
Q 001472 116 ASGCMD------TNLKIWDIRKKGCIHTYK---------------GHTRGINTIRFTPDGRWVVSGGFD-----N----- 164 (1072)
Q Consensus 116 aSgs~D------GsI~IWDlrtgk~v~~l~---------------~h~~~VtsLafSPDG~~LaTGS~D-----G----- 164 (1072)
++.-.+ ..|+.++.. |..+..+. ..+..+-+|+++|+|+.|+++.+. +
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 777666 788888866 55544331 134568899999999966665432 2
Q ss_pred ------eEEEEECCC-CceEEEe--e--e-----cCCceEEEEEcCCCcEEEE
Q 001472 165 ------VVKVWDLTA-GKLLHDF--K--F-----HEGHIRSIDFHPLEFLLAT 201 (1072)
Q Consensus 165 ------sI~IWDl~t-gk~i~~~--~--~-----h~g~ItsLafSPdg~lLaT 201 (1072)
.|..||..+ +.....+ . . ....+..+.+.+++.+|+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 244556554 3222222 2 1 2456888899998887665
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.65 E-value=5.1 Score=48.20 Aligned_cols=139 Identities=16% Similarity=0.204 Sum_probs=88.4
Q ss_pred EEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCC-------EEEEEEcCCeEEEEEcCC-CeeEEEEeCCCC
Q 001472 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEV-------LVLAGASTGVIKLWDLEE-SKMVRTLTGHKS 101 (1072)
Q Consensus 30 lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~-------~LatGS~DGsI~IWDl~t-gk~i~tl~~h~~ 101 (1072)
++..|+....++-.|++.|+.+..+..|..- -+.|.|..+ .-++|-.+..|.-.|.+- |..+.... ...
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKd 558 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKD 558 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehh
Confidence 3345555667777788899988888876654 567777432 223444555666666542 32222211 122
Q ss_pred CeEEEEEcC----CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECC
Q 001472 102 NCTAVEFHP----FGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172 (1072)
Q Consensus 102 ~VtsLafSP----dg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~ 172 (1072)
.++--.|+. ...|+++|+..|.|++||--.......+.+.+..|..+..+.+|+++++.+. ..|.+.|+.
T Consensus 559 Y~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 559 YKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 222223332 3458999999999999995443334445666778999999999998887764 467777764
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.63 E-value=11 Score=49.90 Aligned_cols=231 Identities=17% Similarity=0.171 Sum_probs=104.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCC-CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE
Q 001472 57 LSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKS-NCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCI 135 (1072)
Q Consensus 57 hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~-~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v 135 (1072)
.......++|+|.-.+++.|+..|.|++|-...-+.......... .+..+.|-...........+..+.+|.......+
T Consensus 34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~ 113 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGV 113 (993)
T ss_pred CCCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeeccccccee
Confidence 334566799999999999999999999997543333222211111 1111112111112222233444555544322211
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEee--ecCCce-EEEEEcCCCcEEEEEECCCeEEEEE
Q 001472 136 HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK--FHEGHI-RSIDFHPLEFLLATGSADRTVKFWD 212 (1072)
Q Consensus 136 ~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~--~h~g~I-tsLafSPdg~lLaTgS~DGtIrIWD 212 (1072)
. ....+.+....+--.+ +.| ..+.+++||..-... ..+. ...... .-..+.+...-+..--.+-.-.+|.
T Consensus 114 ~----~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 186 (993)
T KOG1983|consen 114 F----LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQL-SDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLIS 186 (993)
T ss_pred e----cCCcceeccCCCCcch-hcc-cCceeeEeeechhhh-ccceeccccccccceeeeeccceeeeccccccccceee
Confidence 1 1122333332222223 445 788888888642221 1111 000000 0000000000000000000011111
Q ss_pred CCCCcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCCeeecccccCCCeeeeEEecCCCEEEEEEcCCeEEE
Q 001472 213 LETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGI 292 (1072)
Q Consensus 213 l~tge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~~~~s~i~~l~spDGk~LAsgs~DGsVrI 292 (1072)
+.-- ...+..+...+.+..+......+..+..+.+-+|+.........+ .........++..++++..||.+..
T Consensus 187 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~h~Dgs~~f 260 (993)
T KOG1983|consen 187 LPDA--YLGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAY----LPNGQLESRDGSHFVSYHTDGSYAF 260 (993)
T ss_pred cccc--cccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhc----ccccccCccCCceEEEEEecCCEEe
Confidence 1100 012222334455555555555555555555555555443322222 2222222678999999999999999
Q ss_pred EEcCCCce
Q 001472 293 WVADVSHV 300 (1072)
Q Consensus 293 WDlds~~l 300 (1072)
||++.++.
T Consensus 261 Wd~s~g~~ 268 (993)
T KOG1983|consen 261 WDVSSGKL 268 (993)
T ss_pred eecCCCce
Confidence 99988654
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=88.42 E-value=51 Score=37.53 Aligned_cols=197 Identities=16% Similarity=0.104 Sum_probs=118.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEee
Q 001472 102 NCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181 (1072)
Q Consensus 102 ~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~ 181 (1072)
.-..++-.|||..-+++...|.|--.|..+|+....--+.......|...|||..-++-+.. -|.-+|-++.+.. .|.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt-~f~ 140 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT-RFP 140 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE-Eee
Confidence 34567888899888888888889889999998766655666667888999998865553322 5666676655432 222
Q ss_pred ----ecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCC-CCCCeEEEEEeCCCCEEEEEECCcEEEEEecC
Q 001472 182 ----FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP-EVTGVHAITFHPDGRTLFSGFDDNLKVYSWEP 256 (1072)
Q Consensus 182 ----~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~-h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s 256 (1072)
..........|.+.|++-+++.. |.---.|.... .+..+.. .....+.|+..|||...++...++ .|-.+++
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~-~i~vfpaPqG~gpyGi~atpdGsvwyaslagn-aiaridp 217 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPARN-VISVFPAPQGGGPYGICATPDGSVWYASLAGN-AIARIDP 217 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeecc-ccceecCcccC-ceeeeccCCCCCCcceEECCCCcEEEEecccc-ceEEccc
Confidence 23456788899999999888753 22111222211 1222221 234567899999999888865444 2333333
Q ss_pred Ceeec-cccc----CCCeeeeEEecCCCEEEEEEcCCeEEEEEcCCCceeee
Q 001472 257 VICHD-SVDM----GWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPY 303 (1072)
Q Consensus 257 ~~~~~-~l~~----~~s~i~~l~spDGk~LAsgs~DGsVrIWDlds~~l~~~ 303 (1072)
...+. .+.. ..........+.|..-++....+.+..+|-....-..|
T Consensus 218 ~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~ey 269 (353)
T COG4257 218 FAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEY 269 (353)
T ss_pred ccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceee
Confidence 22221 1111 11122222336677777776777777776554443333
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=88.25 E-value=28 Score=42.22 Aligned_cols=106 Identities=15% Similarity=0.181 Sum_probs=53.8
Q ss_pred CCCEEEEEEcC-----CeEEEEEcCCCeeEEEEeC---CCCC-eEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeE
Q 001472 69 AEVLVLAGAST-----GVIKLWDLEESKMVRTLTG---HKSN-CTAVEFHPFGEFFASGCMDT-----NLKIWDIRKKGC 134 (1072)
Q Consensus 69 dG~~LatGS~D-----GsI~IWDl~tgk~i~tl~~---h~~~-VtsLafSPdg~~LaSgs~DG-----sI~IWDlrtgk~ 134 (1072)
++.+++.|+.+ ..+.+||+.+.+-...-.. .... -.++.. -++++++.|+.++ .+..||+.+.+-
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 45566666654 3588889876543221110 0111 112222 2466667776543 467888776543
Q ss_pred EEEEe-----cCCCCeEEEEEcCCCCEEEEEecC----CeEEEEECCCCceE
Q 001472 135 IHTYK-----GHTRGINTIRFTPDGRWVVSGGFD----NVVKVWDLTAGKLL 177 (1072)
Q Consensus 135 v~~l~-----~h~~~VtsLafSPDG~~LaTGS~D----GsI~IWDl~tgk~i 177 (1072)
...-. ..... ..++. -++++++.++.+ ..+.+||+.+.+..
T Consensus 307 ~~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~ 356 (470)
T PLN02193 307 FHCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWT 356 (470)
T ss_pred EeCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCEEE
Confidence 21110 00111 12222 256777777755 45889999876543
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.96 E-value=16 Score=46.18 Aligned_cols=93 Identities=16% Similarity=0.345 Sum_probs=58.6
Q ss_pred eEEEEEcCCCCEEEEEecCC-----eEEEEECCCCceEEEee---ecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCC
Q 001472 145 INTIRFTPDGRWVVSGGFDN-----VVKVWDLTAGKLLHDFK---FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF 216 (1072)
Q Consensus 145 VtsLafSPDG~~LaTGS~DG-----sI~IWDl~tgk~i~~~~---~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tg 216 (1072)
-..+.|-|.|..+++-+.|| .|.++.-. |-.-..+. +.+..+..++|+-....++.+. ...|.+|-..+.
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErN-GLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkNy 326 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERN-GLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKNY 326 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccC-CcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEEEccce
Confidence 34589999999999977665 35555432 21111111 2234466778877666666544 467999998877
Q ss_pred cEEEeeCCCCCCeEEEEEeCCCC
Q 001472 217 ELIGSTRPEVTGVHAITFHPDGR 239 (1072)
Q Consensus 217 e~i~~~~~h~~~VtsIafSPDG~ 239 (1072)
...-+......++.-+.|+|...
T Consensus 327 hWYLK~e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 327 HWYLKVERQIPGISYVKWHPEEK 349 (1243)
T ss_pred EEEEEEeecCCCcceeeeccccC
Confidence 65554444556677889999643
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=87.59 E-value=59 Score=37.32 Aligned_cols=179 Identities=16% Similarity=0.161 Sum_probs=0.0
Q ss_pred CCccCceEEEEecCC------------CCeEEEEEecCCCcEEEEEEC------------------CCeEEEEECCCCce
Q 001472 1 MAKRGYKLQEFVAHS------------ANVNCISIGKKACRFLITGGD------------------DQKVNLWAIGKPTA 50 (1072)
Q Consensus 1 LaktGk~I~~L~gHs------------g~Vt~IafSPdg~~lLaTGs~------------------DGtV~IWDl~t~~~ 50 (1072)
|...++.++.+.... .....+.+.++| +.|++... |+.+.-.|+.+++.
T Consensus 30 lD~~y~~i~~v~~~~~~~~~~~~~~~~~d~He~~it~~g-t~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~Tgev 108 (299)
T PF14269_consen 30 LDSSYEVIWNVSAGNDFGTPDGEPGSYADHHEFEITPDG-TALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEV 108 (299)
T ss_pred ECCCCcEEEEEECCCcccccccccCccCCccceEEcCCC-cEEEEEccceeccccccCcCCCccEecceeEEeccCCCCE
Q ss_pred EEEeeCCCCC---------------------------eEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCC----
Q 001472 51 LMSLCGLSSP---------------------------VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGH---- 99 (1072)
Q Consensus 51 l~sl~~hs~~---------------------------ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h---- 99 (1072)
+..+.....- |.++....+|.+|++.-.-..|.+.|-.+|+.+..+.+.
T Consensus 109 lfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~d 188 (299)
T PF14269_consen 109 LFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSD 188 (299)
T ss_pred EEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCc
Q ss_pred -------CCCeEEEEEc----CCCCEEEEEe----------CCCeEEEEECCCC--eEEEEEecCCCCeE-----EEEEc
Q 001472 100 -------KSNCTAVEFH----PFGEFFASGC----------MDTNLKIWDIRKK--GCIHTYKGHTRGIN-----TIRFT 151 (1072)
Q Consensus 100 -------~~~VtsLafS----Pdg~~LaSgs----------~DGsI~IWDlrtg--k~v~~l~~h~~~Vt-----sLafS 151 (1072)
-..-..+.|. .++.+.+.-. ..+.+...|..+. ..+..+..+...+. .+...
T Consensus 189 f~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L 268 (299)
T PF14269_consen 189 FTLPATNFSWQHDARFLNESNDDGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRL 268 (299)
T ss_pred ccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceEC
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceEEEee
Q 001472 152 PDGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181 (1072)
Q Consensus 152 PDG~~LaTGS~DGsI~IWDl~tgk~i~~~~ 181 (1072)
|+|+.|+.=+..+.+.=++ ..|+++..+.
T Consensus 269 ~nGn~li~~g~~g~~~E~~-~~G~vv~~~~ 297 (299)
T PF14269_consen 269 PNGNVLIGWGNNGRISEFT-PDGEVVWEAQ 297 (299)
T ss_pred CCCCEEEecCCCceEEEEC-CCCCEEEEEE
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.49 E-value=0.89 Score=53.57 Aligned_cols=167 Identities=13% Similarity=0.106 Sum_probs=103.2
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE-EEE-ecCCC----CeE-EEEEcCCCCEEEEEecCCeE
Q 001472 94 RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCI-HTY-KGHTR----GIN-TIRFTPDGRWVVSGGFDNVV 166 (1072)
Q Consensus 94 ~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v-~~l-~~h~~----~Vt-sLafSPDG~~LaTGS~DGsI 166 (1072)
..+......+..+-..|||+.+++-+. ..+.++++.+.... ..+ ....+ .|. .+.....|.-+++++.||.|
T Consensus 214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~v 292 (733)
T COG4590 214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLV 292 (733)
T ss_pred hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCce
Confidence 334445566778889999998887654 67888887654321 111 11111 121 12223356668888889988
Q ss_pred EEE-ECCCCc-----eEEEeeecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCCeEEEEEeCCCCE
Q 001472 167 KVW-DLTAGK-----LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240 (1072)
Q Consensus 167 ~IW-Dl~tgk-----~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~VtsIafSPDG~~ 240 (1072)
.-| |.+.+. .+..++.....+..+.-..+.+-+++-+.+|++.++.....+.+-. ......+..+++||.+.+
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~Sp~~~~ 371 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAMSPNQAY 371 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCcceeeeCcccch
Confidence 776 554332 2333333334444443333456677778888888887554443322 222346778999999999
Q ss_pred EEEEECCcEEEEEecCCeeecc
Q 001472 241 LFSGFDDNLKVYSWEPVICHDS 262 (1072)
Q Consensus 241 LasGsdg~I~Vwd~~s~~~~~~ 262 (1072)
+++-..++++++.+++....-.
T Consensus 372 Ll~e~~gki~~~~l~Nr~Peis 393 (733)
T COG4590 372 LLSEDQGKIRLAQLENRNPEIS 393 (733)
T ss_pred heeecCCceEEEEecCCCCCcc
Confidence 9999999999999987654433
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=87.22 E-value=28 Score=40.20 Aligned_cols=143 Identities=19% Similarity=0.255 Sum_probs=86.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCe------EEEEECCC--C--eEE-----EEEecCCC--------CeEEEEEcCCCCE
Q 001472 100 KSNCTAVEFHPFGEFFASGCMDTN------LKIWDIRK--K--GCI-----HTYKGHTR--------GINTIRFTPDGRW 156 (1072)
Q Consensus 100 ~~~VtsLafSPdg~~LaSgs~DGs------I~IWDlrt--g--k~v-----~~l~~h~~--------~VtsLafSPDG~~ 156 (1072)
-+.+..+.+.+++..+++.+.+|. ++.+++.. + ..+ ..+....+ ..-+|++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 355788889866666666677777 66666543 1 111 11111111 2347888778887
Q ss_pred EEEEecC------CeEEEEECCCCceEEEee---------------ecCCceEEEEEcCCCcEEEEEEC-----CC----
Q 001472 157 VVSGGFD------NVVKVWDLTAGKLLHDFK---------------FHEGHIRSIDFHPLEFLLATGSA-----DR---- 206 (1072)
Q Consensus 157 LaTGS~D------GsI~IWDl~tgk~i~~~~---------------~h~g~ItsLafSPdg~lLaTgS~-----DG---- 206 (1072)
+++.-.+ ..|..++.. |+.+..+. ..+..+-+|+++|+|..|+++.. |+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7776666 688888876 66544431 12345789999999997766643 22
Q ss_pred -------eEEEEECCC-CcE----EEeeCC-----CCCCeEEEEEeCCCCEEEE
Q 001472 207 -------TVKFWDLET-FEL----IGSTRP-----EVTGVHAITFHPDGRTLFS 243 (1072)
Q Consensus 207 -------tIrIWDl~t-ge~----i~~~~~-----h~~~VtsIafSPDG~~Las 243 (1072)
.|..||..+ +.. ...+.. ....+..+.+.+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 233445444 211 222222 3466888999999887776
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.22 E-value=31 Score=44.97 Aligned_cols=227 Identities=16% Similarity=0.066 Sum_probs=104.5
Q ss_pred cEEEEEECCCeEEEEECCCCce---EEE------e--eCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEe
Q 001472 29 RFLITGGDDQKVNLWAIGKPTA---LMS------L--CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT 97 (1072)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~~~---l~s------l--~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~ 97 (1072)
+.|+.|+.||.+.+|.+..... ... + .-+..+|..+...+.-.++++- .|+.|.++++.+-+......
T Consensus 27 ~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~~~~~~~~ 105 (877)
T KOG2063|consen 27 NHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPELEPVPSGT 105 (877)
T ss_pred CEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCccccccccc
Confidence 5799999999999998844311 100 0 1124556666655544444443 46778888776554421111
Q ss_pred CCCCCeEEEEE--cC-C-C--CEEEEEeC--CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEE
Q 001472 98 GHKSNCTAVEF--HP-F-G--EFFASGCM--DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW 169 (1072)
Q Consensus 98 ~h~~~VtsLaf--SP-d-g--~~LaSgs~--DGsI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IW 169 (1072)
+-..+...++ .+ . | .+.++... .....+|+-+.+-.+..--+.......++|. |..+++|-.+....+|
T Consensus 106 -~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~c~~~~~~~~ii~ 182 (877)
T KOG2063|consen 106 -RLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAWC--GHIVCLGLKKSYYIIN 182 (877)
T ss_pred -ccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhccc--ceeEEEeecceeEEEe
Confidence 1111111111 11 1 2 23333322 2234445544443333222223333444443 4445555443444444
Q ss_pred ECCCCceEEEee-ec--CCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEE-EeeCCCCCCeEEEEEeCCCCEEEEEE
Q 001472 170 DLTAGKLLHDFK-FH--EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELI-GSTRPEVTGVHAITFHPDGRTLFSGF 245 (1072)
Q Consensus 170 Dl~tgk~i~~~~-~h--~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i-~~~~~h~~~VtsIafSPDG~~LasGs 245 (1072)
...++.....+. +- ...-..++-..++..++.| .|+...+-|.. |... ..-..-......+.+ +..|+++-.
T Consensus 183 ~~~~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~-kd~~gv~vd~~-G~~~~~~~l~ws~~P~~v~~--~~PYlIa~~ 258 (877)
T KOG2063|consen 183 NTSKGVGPNLFPSSMDNESRKPLIKSLSDQSELLLG-KDNIGVVVDLN-GIIAQRGTLVWSEVPLSVVV--ESPYLIALL 258 (877)
T ss_pred cCCCccccceeeeccccccCCCeEEEecCCceEEEc-cCceEEEEecC-CcccCCCceEecccchhhcc--cCceEEEEc
Confidence 444442111111 10 1111233334455455555 56666666643 3321 000000001111221 456888877
Q ss_pred CCcEEEEEecCCeeeccc
Q 001472 246 DDNLKVYSWEPVICHDSV 263 (1072)
Q Consensus 246 dg~I~Vwd~~s~~~~~~l 263 (1072)
+..+.||+..+..++.++
T Consensus 259 ~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 259 DRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred cccEEEEeccCHHHhhcc
Confidence 789999999988777766
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=86.21 E-value=15 Score=46.62 Aligned_cols=142 Identities=13% Similarity=0.182 Sum_probs=88.8
Q ss_pred cEEEEEECCCeEEEEECCCCceEE------Eee----------------CCCCCeEEEEEcC--CCCEEEEEEcCCeEEE
Q 001472 29 RFLITGGDDQKVNLWAIGKPTALM------SLC----------------GLSSPVDSVAFDS--AEVLVLAGASTGVIKL 84 (1072)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~~~l~------sl~----------------~hs~~ItsLafSP--dG~~LatGS~DGsI~I 84 (1072)
.+|+++. .+.|.||++....... .+. .....|..+.... +...|+++..||.|.+
T Consensus 50 n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 50 NLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 4666655 6799999984432211 110 0112344444433 4567888999999999
Q ss_pred EEcCC-------C----e---------eEEEEeCCCCCeEEEEEc--CCCCEEEEEeCCCeEEEEECCCC--eEEE-EEe
Q 001472 85 WDLEE-------S----K---------MVRTLTGHKSNCTAVEFH--PFGEFFASGCMDTNLKIWDIRKK--GCIH-TYK 139 (1072)
Q Consensus 85 WDl~t-------g----k---------~i~tl~~h~~~VtsLafS--Pdg~~LaSgs~DGsI~IWDlrtg--k~v~-~l~ 139 (1072)
|.+++ . . +...+. ....+++++++ ...++||+++....|.||-+... +... .-.
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 97631 1 0 111222 34578999998 77889999988888888765432 1111 111
Q ss_pred cCCCCeEEEEEcCCC---C---EEEEEecCCeEEEEECC
Q 001472 140 GHTRGINTIRFTPDG---R---WVVSGGFDNVVKVWDLT 172 (1072)
Q Consensus 140 ~h~~~VtsLafSPDG---~---~LaTGS~DGsI~IWDl~ 172 (1072)
.+...|-+|+|.++. . +|++++-.|.+.+|++.
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 245568899998743 2 78889999999998873
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=86.00 E-value=23 Score=42.09 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=25.1
Q ss_pred CCceEEEEEcCCCcEEEEEECCCeEEEEECCC
Q 001472 184 EGHIRSIDFHPLEFLLATGSADRTVKFWDLET 215 (1072)
Q Consensus 184 ~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~t 215 (1072)
...|.++++.+..++|++...+|.|.+|++..
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34488999999889999999999999999974
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.91 E-value=27 Score=38.25 Aligned_cols=170 Identities=12% Similarity=0.092 Sum_probs=96.9
Q ss_pred cEEEEEEC--CCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEE-EEEcCCeEEEEEcCCCeeEEEEeCCCCCeEE
Q 001472 29 RFLITGGD--DQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVL-AGASTGVIKLWDLEESKMVRTLTGHKSNCTA 105 (1072)
Q Consensus 29 ~lLaTGs~--DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~La-tGS~DGsI~IWDl~tgk~i~tl~~h~~~Vts 105 (1072)
.++.+.+. ...|++||+.+++.+....-....+..=-...-|.++. ..-.+|.-.++|..+.+.+..+. ..+.-+.
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWg 135 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWG 135 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCccee
Confidence 56665544 34699999998887766543211111111111133332 23357888899988877776655 2333344
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec--CC---CCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEe
Q 001472 106 VEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG--HT---RGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180 (1072)
Q Consensus 106 LafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~--h~---~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~ 180 (1072)
++ .|++.|+.++....+++-|.++......+.- .. ..++.+.|- +|...+-.-.+..|...|..+|+.+..+
T Consensus 136 Lt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 136 LT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred ee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence 44 3566677776667788777765544333221 11 223445554 5555555555566777777777766554
Q ss_pred e------------ecCCceEEEEEcCCCc-EEEEE
Q 001472 181 K------------FHEGHIRSIDFHPLEF-LLATG 202 (1072)
Q Consensus 181 ~------------~h~g~ItsLafSPdg~-lLaTg 202 (1072)
. .+......+++.|++. ++++|
T Consensus 213 dlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 213 DLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 3 2334567889988774 44444
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.86 E-value=25 Score=46.71 Aligned_cols=31 Identities=6% Similarity=0.213 Sum_probs=25.6
Q ss_pred CCeEEEEEecCCCcEEEEEECCCeEEEEECCC
Q 001472 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGK 47 (1072)
Q Consensus 16 g~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t 47 (1072)
.....++|+|.. .++|.|..+|.|++|-...
T Consensus 36 ~~~~~~afD~~q-~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQ-GLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeecccc-ceEEEEEecccEEEecccc
Confidence 456678899987 8999999999999997533
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=85.53 E-value=72 Score=36.32 Aligned_cols=185 Identities=12% Similarity=0.172 Sum_probs=100.0
Q ss_pred CeEEEEEecCCCcEEE-EEEC----------CCeEEEEECCCCceEEEeeCC------CCCeEEEEEcCCC-----CEEE
Q 001472 17 NVNCISIGKKACRFLI-TGGD----------DQKVNLWAIGKPTALMSLCGL------SSPVDSVAFDSAE-----VLVL 74 (1072)
Q Consensus 17 ~Vt~IafSPdg~~lLa-TGs~----------DGtV~IWDl~t~~~l~sl~~h------s~~ItsLafSPdG-----~~La 74 (1072)
.|..+....++.-+++ +|.. .-+|.+||+.+.+.++.+.-. ...+..+.+.... .+++
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 3667777776622222 2211 126899999999988776422 3456677776522 2444
Q ss_pred EEEc-CCeEEEEEcCCCeeEEEEeCC-------------------CCCeEEEEEcC---CCCEEEEEeCCCeEEEEECC-
Q 001472 75 AGAS-TGVIKLWDLEESKMVRTLTGH-------------------KSNCTAVEFHP---FGEFFASGCMDTNLKIWDIR- 130 (1072)
Q Consensus 75 tGS~-DGsI~IWDl~tgk~i~tl~~h-------------------~~~VtsLafSP---dg~~LaSgs~DGsI~IWDlr- 130 (1072)
.... .+-|.|+|+.+++..+.+..+ ...+..++.+| +|++|+.+...+ -.+|.+.
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T 160 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPT 160 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEH
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEH
Confidence 4333 368999999998766554321 12355566655 556666655433 2223221
Q ss_pred ----CCe---------EEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCC----ceEEEeee-c-CCceEEEE
Q 001472 131 ----KKG---------CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAG----KLLHDFKF-H-EGHIRSID 191 (1072)
Q Consensus 131 ----tgk---------~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tg----k~i~~~~~-h-~g~ItsLa 191 (1072)
+.. .+..+-........++++++|.++++--..+.|..|+..+. ........ . -..+..++
T Consensus 161 ~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~ 240 (287)
T PF03022_consen 161 SVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLK 240 (287)
T ss_dssp HHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEE
T ss_pred HHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceee
Confidence 110 12222212235667889999988888888899999998762 11111121 1 34678888
Q ss_pred EcC--CCcEEEEE
Q 001472 192 FHP--LEFLLATG 202 (1072)
Q Consensus 192 fSP--dg~lLaTg 202 (1072)
+.+ +|.+.+..
T Consensus 241 i~~~~~g~L~v~s 253 (287)
T PF03022_consen 241 IDPEGDGYLWVLS 253 (287)
T ss_dssp E-T--TS-EEEEE
T ss_pred eccccCceEEEEE
Confidence 888 66555544
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=85.40 E-value=49 Score=36.27 Aligned_cols=104 Identities=16% Similarity=0.169 Sum_probs=66.7
Q ss_pred CEEEEEecCCeEEEEECC--CCceEEEeeecCCceEEEEEcCCCcEEEEEECC---C---eEEEE---ECC--CCcEEE-
Q 001472 155 RWVVSGGFDNVVKVWDLT--AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSAD---R---TVKFW---DLE--TFELIG- 220 (1072)
Q Consensus 155 ~~LaTGS~DGsI~IWDl~--tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~D---G---tIrIW---Dl~--tge~i~- 220 (1072)
+.|+.+...+.|.+|++. ..+....|.. -+.|..+.++..|++|++--.+ . .+++| ... ....+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 344444667889999988 3456667764 4789999999999999987432 2 55665 211 111111
Q ss_pred eeC---------------------CCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCCee
Q 001472 221 STR---------------------PEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVIC 259 (1072)
Q Consensus 221 ~~~---------------------~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~ 259 (1072)
.+. +....+.+++-.|-.--|++|.++.+.+|.+.....
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTI 167 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEE
Confidence 111 112356778877866667888889999998865443
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=84.89 E-value=15 Score=40.92 Aligned_cols=145 Identities=17% Similarity=0.215 Sum_probs=82.5
Q ss_pred eEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCC--CeEEEE-E---ecCCCCeEEEEEc
Q 001472 81 VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD---TNLKIWDIRK--KGCIHT-Y---KGHTRGINTIRFT 151 (1072)
Q Consensus 81 sI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgs~D---GsI~IWDlrt--gk~v~~-l---~~h~~~VtsLafS 151 (1072)
.-.+||+.+++....-....--+.+-.|.+||++|.+|+.. ..+++|+... +.+-.. . -.....--.....
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 35689998876533222233445556788999999998752 3478887543 111111 0 0122233345556
Q ss_pred CCCCEEEEEecCC-eEEEEECCC-CceEEEe--e------ecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEe
Q 001472 152 PDGRWVVSGGFDN-VVKVWDLTA-GKLLHDF--K------FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS 221 (1072)
Q Consensus 152 PDG~~LaTGS~DG-sI~IWDl~t-gk~i~~~--~------~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~ 221 (1072)
+||+.|+.|+... ..-+|.-.. ......+ - ....--..+...|+|++++.+..+ -.|||..+.+.+..
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRT 204 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEee
Confidence 7999999988764 344555422 1111111 1 011122356678999999888765 46778888877666
Q ss_pred eCCCCC
Q 001472 222 TRPEVT 227 (1072)
Q Consensus 222 ~~~h~~ 227 (1072)
+..-.+
T Consensus 205 lP~lPg 210 (243)
T PF07250_consen 205 LPDLPG 210 (243)
T ss_pred CCCCCC
Confidence 654433
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.63 E-value=1.2e+02 Score=38.22 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=81.7
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEeCCC----eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe------cCCe-
Q 001472 97 TGHKSNCTAVEFHPFGEFFASGCMDT----NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGG------FDNV- 165 (1072)
Q Consensus 97 ~~h~~~VtsLafSPdg~~LaSgs~DG----sI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS------~DGs- 165 (1072)
..+...+..+.|+|+|..++..+.++ .+++.+.. + .+..+...+....|++++..++... .++.
T Consensus 56 ~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~ 130 (620)
T COG1506 56 LTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGD 130 (620)
T ss_pred cccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEecccccccCCce
Confidence 34667788899999999998887443 34444544 3 2333455678889999888777621 1222
Q ss_pred ------EEEEECCCC-ce--E---------EEeeecCCceEEEEEcCCCcEEEEEECCCe-------EEEEECCCCcEEE
Q 001472 166 ------VKVWDLTAG-KL--L---------HDFKFHEGHIRSIDFHPLEFLLATGSADRT-------VKFWDLETFELIG 220 (1072)
Q Consensus 166 ------I~IWDl~tg-k~--i---------~~~~~h~g~ItsLafSPdg~lLaTgS~DGt-------IrIWDl~tge~i~ 220 (1072)
+.+|....+ .. + .........+....+++++..++....+.. ..++...++ .+.
T Consensus 131 ~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 209 (620)
T COG1506 131 HLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNG-ELE 209 (620)
T ss_pred eeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCC-ceE
Confidence 333433223 11 1 111123345666677776776666554332 333333333 344
Q ss_pred eeCCCCCCeEEEEEeCCCCEEEE
Q 001472 221 STRPEVTGVHAITFHPDGRTLFS 243 (1072)
Q Consensus 221 ~~~~h~~~VtsIafSPDG~~Las 243 (1072)
........+..+.|.++|+.++.
T Consensus 210 ~~~~~~~~~~~~~~~~~gk~~~~ 232 (620)
T COG1506 210 SLTPGEGSISKLAFDADGKSIAL 232 (620)
T ss_pred EEcCCCceeeeeeeCCCCCeeEE
Confidence 44455566889999999996665
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.58 E-value=0.14 Score=60.59 Aligned_cols=144 Identities=10% Similarity=0.179 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeEEEEEe
Q 001472 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFA-SGCMDTNLKIWDIRKKGCIHTYK 139 (1072)
Q Consensus 61 ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsLafSPdg~~La-Sgs~DGsI~IWDlrtgk~v~~l~ 139 (1072)
.....|-+.+.-++.++.+..+..||- .++...... ..+....++|..++..++ .+-..+.+++||+.+... .++.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLE 113 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHh
Confidence 345678888877888888888999984 344444433 455667889988887554 445678999999875431 1111
Q ss_pred -cCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEECCCeE
Q 001472 140 -GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTV 208 (1072)
Q Consensus 140 -~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS~DGtI 208 (1072)
+....-.-+.|++.+..++.|...|.+.+|...+.+.+...-.|...+.+++|.+.+..+ .++.|..+
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi-l~dcd~~L 182 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI-LCDCDNTL 182 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee-ecCcHHHH
Confidence 111112237899988889999999999999987766555544477889999999866544 34444443
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=84.42 E-value=81 Score=35.98 Aligned_cols=222 Identities=14% Similarity=0.102 Sum_probs=132.1
Q ss_pred CeEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEE-E
Q 001472 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVR-T 95 (1072)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i~-t 95 (1072)
.-..++-.+|| ..-+++...|.|--.|-.+++....-.+.......+..-|+|..-++-+.. -|.-+|-++.+... .
T Consensus 63 ap~dvapapdG-~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~ 140 (353)
T COG4257 63 APFDVAPAPDG-AVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP 140 (353)
T ss_pred CccccccCCCC-ceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence 45566777777 556666666666666666776655555555566777888888766664433 45555555544321 1
Q ss_pred --EeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEecCCeEEEEECC
Q 001472 96 --LTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG-HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172 (1072)
Q Consensus 96 --l~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~-h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~ 172 (1072)
............|.+.|++-+++. .|.---.|... ..+..+.. .....+.||..|||..-++.-.+..|...|..
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~ 218 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPF 218 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeec-cccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccc
Confidence 122345577788999999888774 23211122211 12333332 23356789999999977776677788888887
Q ss_pred CCceEEEee---ecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEE-EeeCCCCCCeEEEEEeCCCCEEEE
Q 001472 173 AGKLLHDFK---FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELI-GSTRPEVTGVHAITFHPDGRTLFS 243 (1072)
Q Consensus 173 tgk~i~~~~---~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i-~~~~~h~~~VtsIafSPDG~~Las 243 (1072)
++... .+. ........+.-+|.|..-++-...+.++.||.....-+ ..+......-.++..+..|+..++
T Consensus 219 ~~~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~s 292 (353)
T COG4257 219 AGHAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLS 292 (353)
T ss_pred cCCcc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEee
Confidence 76322 222 11223455666778888888777888999988764422 123333334556666665555554
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=83.73 E-value=6.6 Score=42.89 Aligned_cols=68 Identities=9% Similarity=0.091 Sum_probs=51.6
Q ss_pred EcCCCcEEEEEECCCeEEEEECCCCcEEEee-------C-------CCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCC
Q 001472 192 FHPLEFLLATGSADRTVKFWDLETFELIGST-------R-------PEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPV 257 (1072)
Q Consensus 192 fSPdg~lLaTgS~DGtIrIWDl~tge~i~~~-------~-------~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~ 257 (1072)
+..++.+|++.+.+|.+++||+.+++.+... . .....|..+.++.+|.-+++-+++..+.|+.+-.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 3446888999999999999999988765432 1 2445688899999999888888888888876644
Q ss_pred ee
Q 001472 258 IC 259 (1072)
Q Consensus 258 ~~ 259 (1072)
..
T Consensus 98 ~W 99 (219)
T PF07569_consen 98 CW 99 (219)
T ss_pred ee
Confidence 43
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=83.46 E-value=42 Score=36.79 Aligned_cols=137 Identities=11% Similarity=0.168 Sum_probs=80.2
Q ss_pred CEEEEEeCCCeEEEEECC--CCeEEEEEecCCCCeEEEEEcCCCCEEEEEecCC------eEEEE---ECC--CCceEE-
Q 001472 113 EFFASGCMDTNLKIWDIR--KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN------VVKVW---DLT--AGKLLH- 178 (1072)
Q Consensus 113 ~~LaSgs~DGsI~IWDlr--tgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~DG------sI~IW---Dl~--tgk~i~- 178 (1072)
+.|+.+...+.|.+|++. .......|. .-+.|..+.++..|+||++--.+. .+++| ... ....+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 555555667889999988 334556665 347899999999999999854322 45554 221 011111
Q ss_pred ----------------------EeeecCCceEEEEEcCC-CcEEEEEECCCeEEEEECCCCcE-EE-----eeC----CC
Q 001472 179 ----------------------DFKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFEL-IG-----STR----PE 225 (1072)
Q Consensus 179 ----------------------~~~~h~g~ItsLafSPd-g~lLaTgS~DGtIrIWDl~tge~-i~-----~~~----~h 225 (1072)
++. -...+.+++..|- |++| +|+ ++.+.+|.+..... .. .+. .+
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~ 184 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDH 184 (215)
T ss_pred EEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEEEEecccccEEechhhhhhe
Confidence 111 1335677888884 5554 454 46899998764332 11 111 11
Q ss_pred C--CCeEEEEEeCCCCEEEEEECCcEEEEEec
Q 001472 226 V--TGVHAITFHPDGRTLFSGFDDNLKVYSWE 255 (1072)
Q Consensus 226 ~--~~VtsIafSPDG~~LasGsdg~I~Vwd~~ 255 (1072)
. .....++|. +.|+|..++..+.++.+.
T Consensus 185 ~~~~~p~~v~ic--~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 185 IDNFKPTQVAIC--EGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred ecCceEEEEEEE--eeEEEEecCCEEEEEEEe
Confidence 1 123445554 468888888887777653
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=82.88 E-value=24 Score=39.31 Aligned_cols=137 Identities=14% Similarity=0.174 Sum_probs=79.0
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEec-C--CeEEEEECCC----CceEE---EeeecCCceEEEEE
Q 001472 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF-D--NVVKVWDLTA----GKLLH---DFKFHEGHIRSIDF 192 (1072)
Q Consensus 123 sI~IWDlrtgk~v~~l~~h~~~VtsLafSPDG~~LaTGS~-D--GsI~IWDl~t----gk~i~---~~~~h~g~ItsLaf 192 (1072)
.-.+||+.+++.....-.......+-.+.+||++|.+|+. + ..+++++... ..... .+. ...+-.+...
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~ 125 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATT 125 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceE
Confidence 3568999887643222222333444567889999999875 2 3577887644 11111 111 2334445566
Q ss_pred cCCCcEEEEEECCCe-EEEEECCC--CcEEE-eeC------CCCCCeEEEEEeCCCCEEEEEECCcEEEEEecCCeeec
Q 001472 193 HPLEFLLATGSADRT-VKFWDLET--FELIG-STR------PEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHD 261 (1072)
Q Consensus 193 SPdg~lLaTgS~DGt-IrIWDl~t--ge~i~-~~~------~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~ 261 (1072)
-|||+.|+.|+.+.. ..+|.-.. ..... .+. ....-.-.+...|+|++++.+..+. .|||+.......
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s-~i~d~~~n~v~~ 203 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS-IIYDYKTNTVVR 203 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc-EEEeCCCCeEEe
Confidence 789999999987643 44554321 11111 111 1112234667789999999887766 688988775543
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=82.78 E-value=37 Score=43.19 Aligned_cols=70 Identities=14% Similarity=0.031 Sum_probs=44.1
Q ss_pred ceEEEEEcCCCcEEEEEECCCe-----EEEEECCC---CcEEEeeCCCCCCeEEEEEeCCCCEEEEEECCcEEEEEecC
Q 001472 186 HIRSIDFHPLEFLLATGSADRT-----VKFWDLET---FELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEP 256 (1072)
Q Consensus 186 ~ItsLafSPdg~lLaTgS~DGt-----IrIWDl~t---ge~i~~~~~h~~~VtsIafSPDG~~LasGsdg~I~Vwd~~s 256 (1072)
.-..++|-|.|..+++-+.||. |.++.-+. |+.-. -.+....+..++|.-....++....+.+++|...+
T Consensus 248 ~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~l-r~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkN 325 (1243)
T COG5290 248 MEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDL-RVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKN 325 (1243)
T ss_pred chhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccc-cCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccc
Confidence 3456899999999999886663 56665332 22110 11222346677787776777777777788887554
|
|
| >PRK05560 DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
Probab=82.70 E-value=1.7e+02 Score=38.34 Aligned_cols=205 Identities=8% Similarity=-0.031 Sum_probs=102.7
Q ss_pred cEEEEEECCCeEEEEEC---CC------CceE---EEeeCCCCCeEEEEEcC--CCCEEEEEEcCCeEEEEEcCC-----
Q 001472 29 RFLITGGDDQKVNLWAI---GK------PTAL---MSLCGLSSPVDSVAFDS--AEVLVLAGASTGVIKLWDLEE----- 89 (1072)
Q Consensus 29 ~lLaTGs~DGtV~IWDl---~t------~~~l---~sl~~hs~~ItsLafSP--dG~~LatGS~DGsI~IWDl~t----- 89 (1072)
..|+..+..|.+....+ .. |..+ ..+.....-+.++.+.. +..+++..+.+|.++-.++..
T Consensus 549 d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~ 628 (805)
T PRK05560 549 DTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIR 628 (805)
T ss_pred CeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcc
Confidence 34555666677665543 22 2222 11222223344555552 667889999999988776643
Q ss_pred --CeeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---------CeEEEEEecCCCCeE-EEEEcCCCCEE
Q 001472 90 --SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK---------KGCIHTYKGHTRGIN-TIRFTPDGRWV 157 (1072)
Q Consensus 90 --gk~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrt---------gk~v~~l~~h~~~Vt-sLafSPDG~~L 157 (1072)
|.....+.. .+.+..+........++..+..|.+..+.... |.....+. ....|. .+.+.+++.++
T Consensus 629 r~G~~~ikLke-~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~~i 706 (805)
T PRK05560 629 SNGIIAINLDE-GDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLR-EGDEVVSMDVVREDSQEI 706 (805)
T ss_pred cCCceeeccCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCC-CCCEEEEEEEEcCCCcEE
Confidence 222223332 33444444444455677777788877776532 11122222 222333 33444444468
Q ss_pred EEEecCCeEEEEECCCC-------ceEEEe--eecCCceEEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeCCCCCC
Q 001472 158 VSGGFDNVVKVWDLTAG-------KLLHDF--KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG 228 (1072)
Q Consensus 158 aTGS~DGsI~IWDl~tg-------k~i~~~--~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~~h~~~ 228 (1072)
+..+..|.++...+... +-+..+ ....+.+..+........++..+.+|.+..++...- ........+
T Consensus 707 l~vTk~G~iKr~~l~e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI---~~~gR~a~G 783 (805)
T PRK05560 707 LTVTENGYGKRTPVSEYRLQGRGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEI---SITGRNTQG 783 (805)
T ss_pred EEEEeCCeEEEEEHHHhhccCCCCCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHC---CccccCCCC
Confidence 88888898887765321 112222 222233333322233344556667787777776532 112222345
Q ss_pred eEEEEEeCCC
Q 001472 229 VHAITFHPDG 238 (1072)
Q Consensus 229 VtsIafSPDG 238 (1072)
+..+.+..++
T Consensus 784 Vk~I~L~~~D 793 (805)
T PRK05560 784 VRLIRLDEGD 793 (805)
T ss_pred eeeEecCCCC
Confidence 6666664443
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.94 E-value=16 Score=48.50 Aligned_cols=139 Identities=16% Similarity=0.188 Sum_probs=90.0
Q ss_pred EECCCeEEEEECCCCceEEEeeCCCCCeEEEEE--------cCCCCEEEEEEcCCeEEEEEcCCCe----e-----EEEE
Q 001472 34 GGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAF--------DSAEVLVLAGASTGVIKLWDLEESK----M-----VRTL 96 (1072)
Q Consensus 34 Gs~DGtV~IWDl~t~~~l~sl~~hs~~ItsLaf--------SPdG~~LatGS~DGsI~IWDl~tgk----~-----i~tl 96 (1072)
.+.|..+.+|+++++.....+.+....|..+.. -|.=+++++.+.--.|.++-+.-.+ . ...+
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 345889999999998888888887777777654 2333455554455567776543211 1 1222
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC--CC---e-E----------------EEEEe-cCCCCeEEEEEcCC
Q 001472 97 TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR--KK---G-C----------------IHTYK-GHTRGINTIRFTPD 153 (1072)
Q Consensus 97 ~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlr--tg---k-~----------------v~~l~-~h~~~VtsLafSPD 153 (1072)
...+..|.|+....+|+.|++| .||.|+-.-.. .+ + + +..+. .+..+|..+.....
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 2345668899977788877665 66644432221 11 0 0 11122 35678999999888
Q ss_pred CCEEEEEecCCeEEEEECCC
Q 001472 154 GRWVVSGGFDNVVKVWDLTA 173 (1072)
Q Consensus 154 G~~LaTGS~DGsI~IWDl~t 173 (1072)
-..+.+-+..|.|.+||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 88888999999999999975
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=81.76 E-value=1.6e+02 Score=37.48 Aligned_cols=237 Identities=10% Similarity=0.151 Sum_probs=120.2
Q ss_pred EEecCCCcEEEEEECCCeEEEEEC-CCCceEEEeeC-CCCCeEEEEEcCC---CCEEEEEEcCC-eEEEEEcCCC-----
Q 001472 22 SIGKKACRFLITGGDDQKVNLWAI-GKPTALMSLCG-LSSPVDSVAFDSA---EVLVLAGASTG-VIKLWDLEES----- 90 (1072)
Q Consensus 22 afSPdg~~lLaTGs~DGtV~IWDl-~t~~~l~sl~~-hs~~ItsLafSPd---G~~LatGS~DG-sI~IWDl~tg----- 90 (1072)
.++|+. ..+-.|=....|.-|=+ .+++.++.+.- ...-|.||..... ..+.++|-.++ .-++.-+..+
T Consensus 34 ~~s~~s-n~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~ 112 (670)
T PF10395_consen 34 DFSPDS-NQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTE 112 (670)
T ss_pred ccCCCC-ceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCcccc
Confidence 556665 34444433334444433 35566666543 3445666665432 23444443333 2333322221
Q ss_pred ------e--eEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE--EEEEec-CCCCeEEEEEcC------C
Q 001472 91 ------K--MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC--IHTYKG-HTRGINTIRFTP------D 153 (1072)
Q Consensus 91 ------k--~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~--v~~l~~-h~~~VtsLafSP------D 153 (1072)
+ ....++ -.+.|..+.|..+++.+++...+|.|.+||+..+.. +..+.. +...+..=+|-+ .
T Consensus 113 ~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~ 191 (670)
T PF10395_consen 113 DGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENG 191 (670)
T ss_pred ccccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccC
Confidence 1 112233 367789999999999999999999999999933221 112211 111111112222 2
Q ss_pred CCEEEEEec-C---CeEEEEEC-CCCceEEEee---ecCCce--EEEEEcCCCcEEEEEECCCeEEEEECCCCcEEEeeC
Q 001472 154 GRWVVSGGF-D---NVVKVWDL-TAGKLLHDFK---FHEGHI--RSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR 223 (1072)
Q Consensus 154 G~~LaTGS~-D---GsI~IWDl-~tgk~i~~~~---~h~g~I--tsLafSPdg~lLaTgS~DGtIrIWDl~tge~i~~~~ 223 (1072)
..++++.+. + -..+++.+ .....+.++. .+.... ..+++. +|.+... .+++|.+|++...+....+.
T Consensus 192 ~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~ 268 (670)
T PF10395_consen 192 KDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTIS 268 (670)
T ss_pred CceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEE
Confidence 334444443 2 24667776 1122222222 122222 223333 4554433 67899999998887665543
Q ss_pred CC-----C-CCeEEEEEeCCCCEEEEEECCcEEEEEecCCeeecccc
Q 001472 224 PE-----V-TGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVD 264 (1072)
Q Consensus 224 ~h-----~-~~VtsIafSPDG~~LasGsdg~I~Vwd~~s~~~~~~l~ 264 (1072)
.. . ..+.++. .|....++.+.++.|++.|+.-......+.
T Consensus 269 l~~ii~~~~~~~vSl~-~~s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 269 LPSIIDKESDDLVSLK-PPSPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred echhhccccccceEee-cCCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 22 1 1233333 345566777778889999987554444333
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.62 E-value=3.8 Score=48.62 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=95.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeE-EEE-eCCCC----CeE-EEEEcCCCCEEEEEeCCCeEEEE-E
Q 001472 57 LSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMV-RTL-TGHKS----NCT-AVEFHPFGEFFASGCMDTNLKIW-D 128 (1072)
Q Consensus 57 hs~~ItsLafSPdG~~LatGS~DGsI~IWDl~tgk~i-~tl-~~h~~----~Vt-sLafSPdg~~LaSgs~DGsI~IW-D 128 (1072)
....+..+-..|+|+.|++-+. ..+.|+++.+.... +.+ ....+ .|+ .+.....|.-+.+++.||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 3456777888999999888765 67889988654321 111 11111 122 12223346668888899998887 5
Q ss_pred CCCCe-----EEEEEecCCCCeEEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEeeecCCceEEEEEcCCCcEEEEEE
Q 001472 129 IRKKG-----CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS 203 (1072)
Q Consensus 129 lrtgk-----~v~~l~~h~~~VtsLafSPDG~~LaTGS~DGsI~IWDl~tgk~i~~~~~h~g~ItsLafSPdg~lLaTgS 203 (1072)
.+.+. .++.++-....+..+.-..+.+-+++-+..|.+.++.....+.+..-. --..+..++++|++.+|++-.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~Ll~e~ 376 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAYLLSED 376 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccchheeec
Confidence 54332 223333233344444433345567777888888888755444432222 223567789999999988654
Q ss_pred CCCeEEEEECCCCc
Q 001472 204 ADRTVKFWDLETFE 217 (1072)
Q Consensus 204 ~DGtIrIWDl~tge 217 (1072)
.|.|+++.+++..
T Consensus 377 -~gki~~~~l~Nr~ 389 (733)
T COG4590 377 -QGKIRLAQLENRN 389 (733)
T ss_pred -CCceEEEEecCCC
Confidence 5789999887643
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.34 E-value=1.4e+02 Score=36.34 Aligned_cols=128 Identities=9% Similarity=0.062 Sum_probs=80.3
Q ss_pred EEEEcCCeEEEEEcCCC---eeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE----EEEecCCCCeE
Q 001472 74 LAGASTGVIKLWDLEES---KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCI----HTYKGHTRGIN 146 (1072)
Q Consensus 74 atGS~DGsI~IWDl~tg---k~i~tl~~h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v----~~l~~h~~~Vt 146 (1072)
+.+...|.+.-|-+... -++..-....++|.++.|++|.+.||+--.+..|.+++....+.. +..+.....|.
T Consensus 37 lfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~Il 116 (657)
T KOG2377|consen 37 LFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANIL 116 (657)
T ss_pred EEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeE
Confidence 33334455666654321 122222235678999999999999999999999999997433322 22233445588
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCC-ceEEEeeecCCceEEEEEcCCCcEEEEEE
Q 001472 147 TIRFTPDGRWVVSGGFDNVVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPLEFLLATGS 203 (1072)
Q Consensus 147 sLafSPDG~~LaTGS~DGsI~IWDl~tg-k~i~~~~~h~g~ItsLafSPdg~lLaTgS 203 (1072)
..+|+.+ .-++.....| +-+|-.... ..++..+.|...|.-..|.++-+.++.++
T Consensus 117 GF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 117 GFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred EEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 9999876 4455555444 555554332 33445556777888888998876554443
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=81.20 E-value=15 Score=44.11 Aligned_cols=82 Identities=15% Similarity=0.254 Sum_probs=59.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEc----CCC----------------C-EE
Q 001472 99 HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFT----PDG----------------R-WV 157 (1072)
Q Consensus 99 h~~~VtsLafSPdg~~LaSgs~DGsI~IWDlrtgk~v~~l~~h~~~VtsLafS----PDG----------------~-~L 157 (1072)
....+.+++.+|.+++.++...-|.|.++|+.++..++.+++..+.- +.|. ... . ++
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEEEE
Confidence 34558889999999988888777999999999998888887655421 1211 110 1 23
Q ss_pred EEEecCCeEEEEECCCCceEEEeee
Q 001472 158 VSGGFDNVVKVWDLTAGKLLHDFKF 182 (1072)
Q Consensus 158 aTGS~DGsI~IWDl~tgk~i~~~~~ 182 (1072)
+.+-.-|.|-||.+++|..+..+..
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEEEe
Confidence 4466788999999999888777664
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=80.47 E-value=43 Score=34.22 Aligned_cols=114 Identities=15% Similarity=0.207 Sum_probs=72.4
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCCC--------eeEEEEeCCCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEEC
Q 001472 63 SVAFDSAEVLVLAGASTGVIKLWDLEES--------KMVRTLTGHKSNCTAVEFHP-----FGEFFASGCMDTNLKIWDI 129 (1072)
Q Consensus 63 sLafSPdG~~LatGS~DGsI~IWDl~tg--------k~i~tl~~h~~~VtsLafSP-----dg~~LaSgs~DGsI~IWDl 129 (1072)
.-.|......|++++..|.|.|++.... ..+..+. -...|++++--+ ..+.|+.|+ ...|..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 3456666667888889999999987633 2344444 456677775443 234677765 567999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEcC----CCCEEEEEecCCeEEEEECCCCceEEEe
Q 001472 130 RKKGCIHTYKGHTRGINTIRFTP----DGRWVVSGGFDNVVKVWDLTAGKLLHDF 180 (1072)
Q Consensus 130 rtgk~v~~l~~h~~~VtsLafSP----DG~~LaTGS~DGsI~IWDl~tgk~i~~~ 180 (1072)
.....+..-. -.+.+.++.+-. +..++++ +.+..|.-||....+..+..
T Consensus 81 ~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchhhhhh-CccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEEEEEe
Confidence 8766544333 346688887743 2334444 44677888887655555443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1072 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 7e-26 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-17 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-22 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 6e-22 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-22 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 3e-21 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-22 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 4e-21 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-22 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-21 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-22 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 4e-21 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-22 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-21 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-22 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-21 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-22 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 3e-21 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-22 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-21 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 3e-22 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 3e-21 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 3e-22 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 3e-21 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 3e-22 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-21 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 3e-22 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-21 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 3e-22 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 3e-21 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-22 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 6e-21 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 7e-22 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 6e-06 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 1e-21 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 1e-21 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 1e-21 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 3e-21 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 3e-08 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 5e-21 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 5e-18 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 8e-16 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 5e-06 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 7e-18 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 3e-08 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 7e-18 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 3e-08 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 9e-18 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 2e-13 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 1e-17 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 2e-17 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 3e-17 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-17 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 5e-17 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 5e-17 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-17 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 6e-17 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 1e-16 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-16 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 5e-08 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-16 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 5e-08 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 2e-16 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 7e-04 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 2e-16 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 6e-04 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 3e-16 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 2e-04 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 3e-16 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 1e-04 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 3e-15 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 5e-15 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 5e-15 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 1e-12 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 5e-15 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 5e-15 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 1e-12 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 5e-15 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 1e-12 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 5e-15 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 1e-12 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 6e-15 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 1e-12 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 5e-14 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 3e-04 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 6e-14 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 4e-13 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 3e-07 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-12 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-12 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 3e-12 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 7e-10 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 3e-12 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 4e-09 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 3e-12 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 6e-12 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 5e-11 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 6e-11 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 6e-11 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 1e-10 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 3e-10 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-10 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 6e-09 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 7e-08 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 8e-08 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 3e-07 | ||
| 4e54_B | 435 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 3e-07 | ||
| 3ei4_B | 436 | Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | 3e-07 | ||
| 4e5z_B | 436 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 4e-07 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 4e-07 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 2e-05 | ||
| 3zwl_B | 369 | Structure Of Eukaryotic Translation Initiation Fact | 5e-07 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 9e-07 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 4e-06 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 5e-06 | ||
| 3mmy_A | 368 | Structural And Functional Analysis Of The Interacti | 4e-05 | ||
| 4i79_A | 399 | Crystal Structure Of Human Nup43 Length = 399 | 5e-05 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435 | Back alignment and structure |
|
| >pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | Back alignment and structure |
|
| >pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368 | Back alignment and structure |
|
| >pdb|4I79|A Chain A, Crystal Structure Of Human Nup43 Length = 399 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1072 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-37 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-36 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-25 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-34 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-28 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-28 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-19 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-29 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-25 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 7e-23 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-19 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-27 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-26 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-21 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 9e-23 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-22 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-18 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-15 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-21 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-17 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-11 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-19 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-17 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-15 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-18 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-14 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-14 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-17 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-17 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-14 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-09 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 6e-17 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-13 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-13 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 7e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-11 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.003 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-16 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-15 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-14 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-14 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-12 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-15 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-13 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-12 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-12 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 9e-11 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-09 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-15 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-13 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-12 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-11 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-11 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.002 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-14 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-13 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-11 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-08 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-14 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-13 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-11 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 8e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-09 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-08 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-13 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-08 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.004 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-13 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-13 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-12 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-11 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 9e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-13 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-11 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-09 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-10 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 5e-09 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 7e-10 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 8e-08 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-07 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 7e-10 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 7e-07 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 4e-08 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 1e-07 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 1e-07 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 7e-07 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 3e-06 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 3e-06 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 2e-05 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 4e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 1e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 5e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 1e-04 | |
| d1rwia_ | 260 | b.68.9.1 (A:) Serine/threonine-protein kinase PknD | 0.001 | |
| d2hqsa1 | 269 | b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch | 0.003 | |
| d1pjxa_ | 314 | b.68.6.1 (A:) Diisopropylfluorophosphatase (phosph | 0.003 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 139 bits (350), Expect = 8e-37
Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 20/204 (9%)
Query: 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88
+++ D+ + +W + + + G V V + L+ + ++ +++W +
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 173
Query: 89 ESKMVRTLTGHKSNCTAVEFH--------------------PFGEFFASGCMDTNLKIWD 128
+ L H+ + + G F SG D +K+WD
Sbjct: 174 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 233
Query: 129 IRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIR 188
+ C+ T GH + + F G++++S D ++VWD + + HE +
Sbjct: 234 VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT 293
Query: 189 SIDFHPLEFLLATGSADRTVKFWD 212
S+DFH + TGS D+TVK W+
Sbjct: 294 SLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 138 bits (347), Expect = 2e-36
Identities = 53/314 (16%), Positives = 108/314 (34%), Gaps = 64/314 (20%)
Query: 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
R + H + V + +++ +D + +W +L G + V
Sbjct: 6 RPPEKYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 64
Query: 64 VAFDSAEV------------------------------------------LVLAGASTGV 81
++FD + +++ +
Sbjct: 65 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 124
Query: 82 IKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGH 141
IK+W+++ V+T TGH+ V + G AS D +++W + K C + H
Sbjct: 125 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 184
Query: 142 TRGINTIRFT--------------------PDGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181
+ I + G +++SG D +K+WD++ G L
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244
Query: 182 FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTL 241
H+ +R + FH + + + D+T++ WD + + + V ++ FH +
Sbjct: 245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304
Query: 242 FSGFDDNLKVYSWE 255
+G D V WE
Sbjct: 305 VTGSVDQ-TVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 106 bits (265), Expect = 1e-25
Identities = 70/307 (22%), Positives = 123/307 (40%), Gaps = 27/307 (8%)
Query: 42 LWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKS 101
W I +P +L G SPV V F ++++ + IK+WD E RTL GH
Sbjct: 2 EW-IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD 60
Query: 102 NCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGG 161
+ + F G+ AS D +K+WD + CI T GH ++++ P+G +VS
Sbjct: 61 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120
Query: 162 FDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS 221
D +K+W++ G + F H +R + + L+A+ S D+TV+ W + T E
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE 180
Query: 222 TRP--------------------EVTGVHAITFHPDGRTLFSGFDDN-LKVYSWEPVICH 260
R E TG G L SG D +K++ +C
Sbjct: 181 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 240
Query: 261 DSVDMGWSTLGDLCIN-DGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVK 319
++ + + + + GK + ++ +W D + + + T +
Sbjct: 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW--DYKNKRC--MKTLNAHEHFVTSLD 296
Query: 320 FNPPGSH 326
F+ +
Sbjct: 297 FHKTAPY 303
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 133 bits (335), Expect = 1e-34
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Query: 72 LVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKI--WDI 129
L ++GA KLWD+ E +T TGH+S+ A+ F P G FA+G D ++
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 130 RKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRS 189
++ +++ GI ++ F+ GR +++G D VWD H+ +
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 317
Query: 190 IDFHPLEFLLATGSADRTVKFWD 212
+ +ATGS D +K W+
Sbjct: 318 LGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 115 bits (287), Expect = 2e-28
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 2/145 (1%)
Query: 28 CRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87
R ++G D LW + + + G S ++++ F G+ +L+DL
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 88 EESKMVRTLTGHKSNC--TAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGI 145
+ + T + C T+V F G +G D N +WD K GH +
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Query: 146 NTIRFTPDGRWVVSGGFDNVVKVWD 170
+ + T DG V +G +D+ +K+W+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 114 bits (286), Expect = 3e-28
Identities = 63/292 (21%), Positives = 114/292 (39%), Gaps = 8/292 (2%)
Query: 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDS 68
+ H A + + G R L++ D K+ +W + ++ SS V + A+
Sbjct: 49 RTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 69 AEVLVLAGASTGVIKLWDLEESKMVRTLTGHKS---NCTAVEFHPFGEFFASGCMDTNLK 125
+ V G + +++L+ + ++ + + + DT
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA 167
Query: 126 IWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG 185
+WDI T+ GHT + ++ PD R VSG D K+WD+ G F HE
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 186 HIRSIDFHPLEFLLATGSADRTVKF--WDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243
I +I F P ATGS D T + + + S + G+ +++F GR L +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 244 GFDDN-LKVYSWEPVICHDSVDMGWSTLGDLCIN-DGKLLGCSFYRNSVGIW 293
G+DD V+ + + + L + DG + + + + IW
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 87.9 bits (216), Expect = 3e-19
Identities = 46/285 (16%), Positives = 85/285 (29%), Gaps = 53/285 (18%)
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150
+ RTL GH + A+ + S D L IWD +H + + T +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGH------------------------ 186
P G +V GG DN+ +++L +
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 187 ---------------------IRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPE 225
+ S+ P L +G+ D + K WD+ +
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 226 VTGVHAITFHPDGRTLFSGFDDN-LKVYSWEPVICHDSVDMGWSTLGDLCI---NDGKLL 281
+ ++AI F P+G +G DD +++ + G + G+LL
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 282 GCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSH 326
+ + +W D + G + + + G
Sbjct: 286 LAGYDDFNCNVW--DALKADR--AGVLAGHDNRVSCLGVTDDGMA 326
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 117 bits (294), Expect = 3e-29
Identities = 63/250 (25%), Positives = 106/250 (42%), Gaps = 15/250 (6%)
Query: 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLV 73
+ + + + +++G D + +W I L L G + V V +D V+
Sbjct: 93 LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVS 152
Query: 74 LAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG 133
GA ++K+WD E + TL GH + +++F G SG +DT++++WD+
Sbjct: 153 --GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGN 208
Query: 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFH 193
CIHT GH + + +VSG D+ VK+WD+ G+ L + H ++
Sbjct: 209 CIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL 266
Query: 194 PL-EFLLATGSADRTVKFWDLETFELIGSTRPEVTG-----VHAITFHPDGRTLFSGFDD 247
+ + T S D TVK WDL+T E I + +G V I G +
Sbjct: 267 QFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326
Query: 248 N---LKVYSW 254
K+
Sbjct: 327 GTEETKLLVL 336
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 107 bits (267), Expect = 1e-25
Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 14/207 (6%)
Query: 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAG 76
+V + + R +++G D V +W T L +L G ++ V S+ FD + V++G
Sbjct: 136 HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG--IHVVSG 193
Query: 77 ASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH 136
+ I++WD+E + TLTGH+S + +E SG D+ +KIWDI+ C+
Sbjct: 194 SLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQ 251
Query: 137 TYKGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTAGKLLHDFKF-----HEGHIRSI 190
T +G + + + + +V++ D VK+WDL G+ + + G + I
Sbjct: 252 TLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI 311
Query: 191 DFHPLEFLLATGSADRT----VKFWDL 213
+ + A GS + T + D
Sbjct: 312 RASNTKLVCAVGSRNGTEETKLLVLDF 338
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 99.1 bits (245), Expect = 7e-23
Identities = 57/326 (17%), Positives = 109/326 (33%), Gaps = 49/326 (15%)
Query: 43 WAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN 102
W G+ + L G V + +++G+ +K+W K +RTL GH
Sbjct: 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 103 CTAVEFHP--------------------------------------FGEFFASGCMDTNL 124
+ + + SG D L
Sbjct: 60 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119
Query: 125 KIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE 184
++WDI C+H GH + +++ R VVSG +D +VKVWD LH + H
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDG--RRVVSGAYDFMVKVWDPETETCLHTLQGHT 177
Query: 185 GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG 244
+ S+ F + + +GS D +++ WD+ET I + + + + L SG
Sbjct: 178 NRVYSLQFDGI--HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSG 233
Query: 245 FDDN-LKVYS--WEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIW-VADVSHV 300
D+ +K++ + + + + S +V +W + +
Sbjct: 234 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 293
Query: 301 EPYGVGAPEPDQSICTEVKFNPPGSH 326
+ ++ +
Sbjct: 294 RNLVTLESGGSGGVVWRIRASNTKLV 319
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.7 bits (218), Expect = 2e-19
Identities = 31/174 (17%), Positives = 65/174 (37%), Gaps = 15/174 (8%)
Query: 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFD 67
L H+ V + +++G D + +W + + +L G S +
Sbjct: 170 LHTLQGHTNRVYSLQFDGI---HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK 226
Query: 68 SAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPF-GEFFASGCMDTNLKI 126
++++G + +K+WD++ + ++TL G + +AV F F + D +K+
Sbjct: 227 DN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKL 284
Query: 127 WDIRKKGCIHTYK-----GHTRGINTIRFTPDGRWVVSGGFDN----VVKVWDL 171
WD++ I G + IR + G + + V D
Sbjct: 285 WDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 113 bits (282), Expect = 2e-27
Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 25/212 (11%)
Query: 28 CRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87
L++G D+ V +W + ++L + AG+ +++WD
Sbjct: 175 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 234
Query: 88 EESKMVRTL-------TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG------- 133
E +V L TGHK + +V F G+ SG +D ++K+W+++
Sbjct: 235 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 294
Query: 134 -----CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIR 188
C TY GH + ++ T + +++SG D V WD +G L + H +
Sbjct: 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 354
Query: 189 SID------FHPLEFLLATGSADRTVKFWDLE 214
S+ P + ATGS D + W +
Sbjct: 355 SVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 111 bits (276), Expect = 1e-26
Identities = 53/280 (18%), Positives = 111/280 (39%), Gaps = 27/280 (9%)
Query: 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
+ + + +FL TG +D+ + +W I +M L G + S
Sbjct: 110 ENLNTSSSPSSDLYIRSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 168
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123
+ + + +++G+ +++WDL + TL+ T G++ A+G +D
Sbjct: 169 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA 228
Query: 124 LKIWDIRKKGCIHTYK-------GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL 176
+++WD + GH + ++ FT DG+ VVSG D VK+W+L
Sbjct: 229 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 288
Query: 177 ------------LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP 224
+ H+ + S+ + + +GS DR V FWD ++ + +
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG 348
Query: 225 EVTGVHAI------TFHPDGRTLFSGFDDN-LKVYSWEPV 257
V ++ + P+ +G D +++ ++ +
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 94.9 bits (234), Expect = 3e-21
Identities = 66/331 (19%), Positives = 114/331 (34%), Gaps = 44/331 (13%)
Query: 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP----TALMSLCGLSSPV 61
Y + + + + ++ + + L+ P L +S V
Sbjct: 6 YNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVV 65
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG------------------HKSNC 103
V F S + LA +++ + + +V L+
Sbjct: 66 CCVKF-SNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI 124
Query: 104 TAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163
+V F P G+F A+G D ++IWDI + + +GH + I ++ + P G +VSG D
Sbjct: 125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 184
Query: 164 NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR 223
V++WDL G+ +G +A GS DR V+ WD ET L+
Sbjct: 185 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 244
Query: 224 PEVT-------GVHAITFHPDGRTLFSGFDDN-----------LKVYSWEPVICHDSVDM 265
E V+++ F DG+++ SG D K S P V
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304
Query: 266 GWSTLGDLCI---NDGKLLGCSFYRNSVGIW 293
L + + + + V W
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFW 335
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.1 bits (136), Expect = 6e-09
Identities = 21/204 (10%), Positives = 55/204 (26%), Gaps = 30/204 (14%)
Query: 100 KSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCI----HTYKGHTRGINTIRFTPDGR 155
++ + + +++ I H HT + ++F+ DG
Sbjct: 17 PPFLLDLDSQSVPDAL-KKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE 75
Query: 156 WVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET 215
++ +G + +V+ ++ G L+ + + ++
Sbjct: 76 YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY----------- 123
Query: 216 FELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCI 275
+ ++ F PDG+ L +G +D L + G
Sbjct: 124 -------------IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLD 170
Query: 276 NDGKLLGCSFYRNSVGIWVADVSH 299
+ + D+
Sbjct: 171 YFPSGDKLVSGSGDRTVRIWDLRT 194
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.6 bits (241), Expect = 9e-23
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 15/142 (10%)
Query: 80 GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK 139
IK+W+ + VRTL GHK +++ SG D +++WDI C+ +
Sbjct: 158 RTIKVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLE 215
Query: 140 GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAG---------KLLHDFKFHEGHIRSI 190
GH + IRF + +VSG +D +KVWDL A L H G + +
Sbjct: 216 GHEELVRCIRFDN--KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 273
Query: 191 DFHPLEFLLATGSADRTVKFWD 212
F F + + S D T+ WD
Sbjct: 274 QFDE--FQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.1 bits (237), Expect = 3e-22
Identities = 54/298 (18%), Positives = 99/298 (33%), Gaps = 60/298 (20%)
Query: 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAF 66
++ S V C+ + +++G D + +W L G + V + +
Sbjct: 7 RIHCRSETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63
Query: 67 DSAEVLVLAGA--------------------------------------STGVIKLWD-- 86
D ++ + I +WD
Sbjct: 64 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123
Query: 87 -LEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGI 145
+ + R L GH++ V+F ASG D +K+W+ + T GH RGI
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVRTLNGHKRGI 181
Query: 146 NTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSAD 205
+++ R VVSG DN +++WD+ G L + H + +G+ D
Sbjct: 182 ACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRFDNKRIVSGAYD 237
Query: 206 RTVKFWDLETFELIGSTRPEVTGVHAITFH--------PDGRTLFSGFDDNLKVYSWE 255
+K WDL + + + + H D + S D+ + W+
Sbjct: 238 GKIKVWDLVAALDPRAPAGTLC-LRTLVEHSGRVFRLQFDEFQIVSSSHDD-TILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.0 bits (203), Expect = 8e-18
Identities = 51/270 (18%), Positives = 90/270 (33%), Gaps = 51/270 (18%)
Query: 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFAS 117
S V + +D +++G IK+WD + R LTGH + +++ S
Sbjct: 15 SKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGS 72
Query: 118 GCMDT--------------------------------------NLKIWDIRKKGCIHTY- 138
++ +WD+ I
Sbjct: 73 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 132
Query: 139 --KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE 196
GH +N + F SG D +KVW+ + + + H+ I + +
Sbjct: 133 VLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD-- 188
Query: 197 FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEP 256
L+ +GS+D T++ WD+E + V D + + SG D K+ W+
Sbjct: 189 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDG-KIKVWDL 245
Query: 257 VICHDSVDM-GWSTLGDLCINDGKLLGCSF 285
V D G L L + G++ F
Sbjct: 246 VAALDPRAPAGTLCLRTLVEHSGRVFRLQF 275
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.0 bits (185), Expect = 2e-15
Identities = 36/243 (14%), Positives = 81/243 (33%), Gaps = 45/243 (18%)
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150
+ + + +++ + SG D +KIWD C GHT + +++
Sbjct: 6 QRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63
Query: 151 --------------------------------------TPDGRWVVSGGFDNVVKVWDLT 172
+ +V+ D + VWD+
Sbjct: 64 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123
Query: 173 AGKLLHDFKFHEGHIRS-IDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHA 231
+ + + GH + + + + S DRT+K W+ T E + + G+
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA- 182
Query: 232 ITFHPDGRTLFSGFDDN-LKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSV 290
R + SG DN ++++ E C ++ + + ++ +++ Y +
Sbjct: 183 -CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIV-SGAYDGKI 240
Query: 291 GIW 293
+W
Sbjct: 241 KVW 243
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.1 bits (232), Expect = 3e-21
Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 98 GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWV 157
S ++ + P GE+ A G +N+++ + K + H + +++F G+W
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL-HESCVLSLKFAYCGKWF 280
Query: 158 VSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213
VS G DN++ W G + K + S D + + TGS D+ +++
Sbjct: 281 VSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.3 bits (204), Expect = 1e-17
Identities = 41/300 (13%), Positives = 78/300 (26%), Gaps = 53/300 (17%)
Query: 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAI-----GKPTALMSLCGLS 58
R + + H V ++I R + TGG V +W I P + +
Sbjct: 40 RHARQINTLNHGEVVCAVTISNPT-RHVYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRD 97
Query: 59 SPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASG 118
+ + S ++ G + +WDL S +
Sbjct: 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCF 157
Query: 119 CM-------------------------------------------DTNLKIWDIRKKGCI 135
N ++G
Sbjct: 158 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ 217
Query: 136 HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPL 195
T I ++ + P G W+ G + V+V + + HE + S+ F
Sbjct: 218 LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYC 276
Query: 196 EFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWE 255
+ D + W I ++ + V + D + + +G D K +E
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASIFQSKES-SSVLSCDISVDDKYIVTGSGDK-KATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.1 bits (162), Expect = 3e-12
Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 8/118 (6%)
Query: 58 SSPVDSVAFD-SAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFA 116
S P S ++ + +I ++ + TL H AV
Sbjct: 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVY 67
Query: 117 SGCMDTNLKIWDIRKKGCIHT-----YKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW 169
+G +K+WDI G I + + PDG ++ GG + + +W
Sbjct: 68 TGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.6 bits (158), Expect = 7e-12
Identities = 32/211 (15%), Positives = 53/211 (25%), Gaps = 8/211 (3%)
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK----- 175
D + R I+T H + + + R V +GG VKVWD++
Sbjct: 31 DALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV 88
Query: 176 LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFH 235
D + +IRS P L G T+ WDL +
Sbjct: 89 SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148
Query: 236 PDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVA 295
+ + + + V D G + + V
Sbjct: 149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV- 207
Query: 296 DVSHVEPYGVGAPEPDQSICTEVKFNPPGSH 326
+ S + + P G
Sbjct: 208 RSWDLREGRQLQQHDFTSQIFSLGYCPTGEW 238
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.8 bits (156), Expect = 1e-11
Identities = 6/67 (8%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
S+ F ++ ++ W + S+ + + ++ +G D
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDK 328
Query: 123 NLKIWDI 129
++++
Sbjct: 329 KATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (141), Expect = 1e-09
Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 8/107 (7%)
Query: 148 IRFTPDGRW-VVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADR 206
T DG+ V D ++ + ++ H + ++ + TG
Sbjct: 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYTGG-KG 72
Query: 207 TVKFWDLETFELIGSTRPEVTGVH-----AITFHPDGRTLFSGFDDN 248
VK WD+ + PDG TL G + +
Sbjct: 73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLV 73
H + V + ++ ++ G D +N W ++ SS V S + +
Sbjct: 264 HESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYI 321
Query: 74 LAGASTGVIKLWDL 87
+ G+ ++++
Sbjct: 322 VTGSGDKKATVYEV 335
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 89.5 bits (220), Expect = 2e-19
Identities = 46/342 (13%), Positives = 104/342 (30%), Gaps = 35/342 (10%)
Query: 18 VNCISIGKKACRFLITGGDDQKVNLWAI--GKPTALMSLCGLSSPVDSVAFDSAEVLVLA 75
++C + K + ++ +V+++ K + L + V V + ++
Sbjct: 10 ISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
Query: 76 GASTGVIKLWDLEES--KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG 133
+ +W L+ K + V + P + FA G + I ++
Sbjct: 69 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128
Query: 134 ----CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHD---------- 179
C H K + ++ + P+ + +G D +++ ++
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188
Query: 180 --------FKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHA 231
G + + F +A S D TV D + + + E + A
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 248
Query: 232 ITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVG 291
+TF + + +G D ++++ DS S G L + R
Sbjct: 249 VTFITESSLVAAGHDCFPVLFTY------DSAAGKLSFGGRLDVPKQSSQRGLTARERFQ 302
Query: 292 IWVADVSHVEPYGVGAPEPD--QSICTEVKFNPPGSHSLEKV 331
S GA ++ +++ G +
Sbjct: 303 NLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQF 344
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 83.0 bits (203), Expect = 2e-17
Identities = 43/272 (15%), Positives = 86/272 (31%), Gaps = 31/272 (11%)
Query: 57 LSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM--VRTLTGHKSNCTAVEFHPFGEF 114
L P+ A++ + + + +++ +K V L H T V++ P
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 115 FASGCMDTNLKIWDIRKKG--CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172
+ D N +W ++ + R +R+ P+ + G V+ +
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 173 AGKLLHDFKFHEGH----IRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVT- 227
K + + S+D+HP LLA GS D + + E+ P
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 228 -----------------GVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTL 270
VH + F +G + D+ V + + TL
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS-TVCLADADKKMAVATLASETL 244
Query: 271 GDL---CINDGKLLGCSFYRNSVGIWVADVSH 299
L I + L+ + + ++ D +
Sbjct: 245 PLLAVTFITESSLV-AAGHDCFPVLFTYDSAA 275
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.6 bits (189), Expect = 1e-15
Identities = 25/170 (14%), Positives = 41/170 (24%), Gaps = 6/170 (3%)
Query: 52 MSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPF 111
V V F + V + + L D ++ V TL AV F
Sbjct: 195 FESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITE 254
Query: 112 GEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171
A+G D ++ ++ G D
Sbjct: 255 SSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG- 312
Query: 172 TAGKLLHDFKFHEGHIRSIDFHP----LEFLLATGSADRTVKFWDLETFE 217
+A H+ + I T D + WD+ + E
Sbjct: 313 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.0 bits (146), Expect = 3e-10
Identities = 10/88 (11%), Positives = 24/88 (27%), Gaps = 3/88 (3%)
Query: 182 FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET--FELIGSTRPEVTGVHAITFHPDGR 239
F I ++ +A + V ++ + + + V + + PD
Sbjct: 5 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN 64
Query: 240 TLFSGFDDNLKVYSWEPVICHDSVDMGW 267
+ + D Y W +
Sbjct: 65 RIVTCGTDR-NAYVWTLKGRTWKPTLVI 91
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.4 bits (134), Expect = 1e-08
Identities = 48/317 (15%), Positives = 90/317 (28%), Gaps = 33/317 (10%)
Query: 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLS--SPVDSV 64
++ E H+ V + ++T G D+ +W + T +L L V
Sbjct: 43 QVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCV 101
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNC----TAVEFHPFGEFFASGCM 120
+ E G+ + VI + E+ K ++++HP A+G
Sbjct: 102 RWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 161
Query: 121 DTNLKIWDIRKKG------------------CIHTYKGHTRGINTIRFTPDGRWVVSGGF 162
D +I+ K + ++ + F+ +G V
Sbjct: 162 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH 221
Query: 163 DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF-WDLETFELIGS 221
D+ V + D + + ++ F L+A G V F +D +L
Sbjct: 222 DSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFG 281
Query: 222 TRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVIC-----HDSVDMGWSTLGDLCIN 276
R +V + R F D H + S L
Sbjct: 282 GRLDVPKQSS-QRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAK 340
Query: 277 DGKLLGCSFYRNSVGIW 293
+ + IW
Sbjct: 341 CSQFCTTG-MDGGMSIW 356
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 84.6 bits (207), Expect = 6e-18
Identities = 27/187 (14%), Positives = 50/187 (26%), Gaps = 3/187 (1%)
Query: 95 TLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDG 154
TL GH ++ + +G D ++++D K + GH G+ +++ G
Sbjct: 7 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65
Query: 155 RWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEF-LLATGSADRTVKFWDL 213
V V + + TGS D T+ W L
Sbjct: 66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125
Query: 214 ETFELIGSTRPE-VTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGD 272
+ E + T + + V + +TL
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185
Query: 273 LCINDGK 279
+ K
Sbjct: 186 WDVAQMK 192
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.5 bits (181), Expect = 1e-14
Identities = 43/346 (12%), Positives = 99/346 (28%), Gaps = 107/346 (30%)
Query: 14 HSANV-NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVL 72
H +V C+ ++ITG DD+ + ++ L+ L G V ++ + +L
Sbjct: 11 HMTSVITCLQFED---NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 67
Query: 73 V-------------------------------------------LAGASTGVIKLWDLEE 89
V + G+ + +W L +
Sbjct: 68 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 127
Query: 90 SKMVRTL---------------------TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD 128
V + G SG D L +WD
Sbjct: 128 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWD 187
Query: 129 IRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK------- 181
+ + C++ GHT I + + + + +S D +++WDL G+L++ +
Sbjct: 188 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG 247
Query: 182 -------------------------------FHEGHIRSIDFHPLEFLLATGSADRTVKF 210
+H ++ +I + + ++
Sbjct: 248 LLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNI 307
Query: 211 WDLETFELIGSTRPEVTG-VHAITFHPDGRTLFSGFDDNLKVYSWE 255
++L + +L+ + + + ++ F D + +
Sbjct: 308 YNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.8 bits (179), Expect = 2e-14
Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Query: 136 HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPL 195
T +GH + T + +V++G D +++V+D K L H+G + ++ +
Sbjct: 6 TTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH- 63
Query: 196 EFLLATGSADRTVKFWDLETFELIGSTRPEVTG---VHAITFHPDGRTLFSGFDDNLKVY 252
+L +GS DRTV+ WD++ + + + + + D+ L V+
Sbjct: 64 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123
Query: 253 SWE 255
Sbjct: 124 KLP 126
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 82.6 bits (202), Expect = 3e-17
Identities = 13/158 (8%), Positives = 34/158 (21%), Gaps = 18/158 (11%)
Query: 72 LVLAGASTGVIKLWDLEESKM-------VRTLTGHKSNCTAVEFHPFGEFFASGCMDTN- 123
+ + + D + + + P +G D N
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251
Query: 124 ------LKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLL 177
D I + + + V+ +D+ K+
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV- 310
Query: 178 HDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET 215
+ ++ + + D + + LE
Sbjct: 311 ---TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 82.6 bits (202), Expect = 3e-17
Identities = 20/184 (10%), Positives = 47/184 (25%), Gaps = 20/184 (10%)
Query: 85 WDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC-------IHT 137
+D+E K+ T S+ A F + + D
Sbjct: 164 YDMEGRKIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV 222
Query: 138 YKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTA-------GKLLHDFKFHEGHIRSI 190
N + P +G +D + +++ +
Sbjct: 223 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP 282
Query: 191 DFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLK 250
+ +D++T ++ + + D +T+ DD K
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN----NLTDLRLSADRKTVMVRKDDG-K 337
Query: 251 VYSW 254
+Y++
Sbjct: 338 IYTF 341
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 74.9 bits (182), Expect = 1e-14
Identities = 17/182 (9%), Positives = 42/182 (23%), Gaps = 26/182 (14%)
Query: 28 CRFLITGGDDQKVNLWAIG-------KPTALMSLCGLSSPVDSVAFDSAEVLVLAG---- 76
+ L + + + + + AG
Sbjct: 190 SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL 249
Query: 77 ---ASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG 133
D + +M+ L + F ++ L +D++ +
Sbjct: 250 NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR- 308
Query: 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFH 193
+ +R + D + V+ D + + L + + D
Sbjct: 309 ---KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE--------DERTVETDKR 357
Query: 194 PL 195
PL
Sbjct: 358 PL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 58.3 bits (139), Expect = 2e-09
Identities = 46/309 (14%), Positives = 82/309 (26%), Gaps = 24/309 (7%)
Query: 105 AVEFHPF-GEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163
A +F P G+ A I D+ + I +R D + G
Sbjct: 7 AEDFSPLDGDLIAFVSRGQ-AFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTR 63
Query: 164 --NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS 221
+ + ++D GK F+ + G++ ++ + + DLET +
Sbjct: 64 EGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 122
Query: 222 TRPEVTGVHAITFHPDGRT-----------LFSGFDDNLKVYSWEPVICHDSVDMGWSTL 270
R + T + R + VY E +
Sbjct: 123 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDY 182
Query: 271 GDLCINDGKLLGCSFYRNSVGIW---VADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHS 327
D K L YR+ V + S K P S
Sbjct: 183 APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTS 242
Query: 328 LEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDSTGGKPVASQKIGPLNSPKVVPPLDSE- 386
+ G + RS+ + + D + I + + G + P
Sbjct: 243 --EAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVL 300
Query: 387 EISDLQTEK 395
D++T K
Sbjct: 301 LKYDVKTRK 309
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 52.2 bits (123), Expect = 2e-07
Identities = 26/187 (13%), Positives = 59/187 (31%), Gaps = 16/187 (8%)
Query: 74 LAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN--LKIWDIRK 131
+A S G + D+ + +++ V + L I+D +
Sbjct: 18 IAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY-R 74
Query: 132 KGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSID 191
G ++ + + + +G++ V + DL GK + E I
Sbjct: 75 TGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFT 134
Query: 192 FHPLEFLLA----------TGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTL 241
+A G + + +D+E ++ +T + +A F D + L
Sbjct: 135 ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTEN-SHDYAPAFDADSKNL 193
Query: 242 FSGFDDN 248
+ +
Sbjct: 194 YYLSYRS 200
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 81.4 bits (199), Expect = 6e-17
Identities = 34/314 (10%), Positives = 66/314 (21%), Gaps = 75/314 (23%)
Query: 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAI---GKPTALMSLCGLSSPVDSVAFDSA 69
A ++ I I L+ D + ++ K L+ P+ F
Sbjct: 9 APKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 70 EVLVLAGASTGVIKL--------------------------------------------W 85
L + + L
Sbjct: 68 TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127
Query: 86 DLEESKMVRTLTGHKS------NCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK 139
D + + G ++ ++ + + +
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI 187
Query: 140 GHTRGINTIR----FTPDGRWVVSGGFDNVVKVWDLTAG---------------KLLHDF 180
+ IR + D V V +L
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
+ SI+F P L T +D + W+L+T + I + +
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI-KNFAKFNEDSVVKIACSDNI 306
Query: 241 LFSGF-DDNLKVYS 253
L DD K +
Sbjct: 307 LCLATSDDTFKTNA 320
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 70.6 bits (171), Expect = 2e-13
Identities = 14/114 (12%), Positives = 36/114 (31%), Gaps = 7/114 (6%)
Query: 83 KLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHT 142
K + ++ T ++EF P +F + D + W+++ + I +
Sbjct: 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293
Query: 143 RGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDF--HP 194
+ ++ + D+ K + + + I I +P
Sbjct: 294 -EDSVVKIACSDNILCLATSDDTFKTN----AAIDQTIELNASSIYIIFDYENP 342
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.9 bits (169), Expect = 3e-13
Identities = 22/160 (13%), Positives = 49/160 (30%), Gaps = 22/160 (13%)
Query: 80 GVIKLWDLEESKMVRTLTGHKSNCTA----VEFHPFGEFFASGCMDTNLKIWDIRKKGCI 135
++ + L + E +A +D + + +G
Sbjct: 170 SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD 229
Query: 136 ---------------HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
+N+I F+P +++ + G D ++ W+L K + +F
Sbjct: 230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL--ETFEL 218
+ + +L ++D T K +T EL
Sbjct: 290 AKFNE-DSVVKIACSDNILCLATSDDTFKTNAAIDQTIEL 328
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.6 bits (158), Expect = 7e-12
Identities = 10/87 (11%), Positives = 26/87 (29%), Gaps = 4/87 (4%)
Query: 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGH---IRSI 190
+ + I+ I+ P ++ +D + V+ D + +
Sbjct: 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
Query: 191 DFHP-LEFLLATGSADRTVKFWDLETF 216
+F + + G+ + DL
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGS 89
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.3 bits (157), Expect = 1e-11
Identities = 7/74 (9%), Positives = 21/74 (28%), Gaps = 3/74 (4%)
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK---GHTRGINT 147
++V+ K + ++ P D +L ++ + + +
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 148 IRFTPDGRWVVSGG 161
F + + G
Sbjct: 62 CNFIDNTDLQIYVG 75
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.5 bits (129), Expect = 3e-08
Identities = 25/249 (10%), Positives = 63/249 (25%), Gaps = 18/249 (7%)
Query: 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTL---TGHKSNCTAVEFHPFGE- 113
+ + ++ L+L + G + ++ + L +K F +
Sbjct: 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL 70
Query: 114 --FFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171
+ + + T GI I D + + + + +
Sbjct: 71 QIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR 130
Query: 172 TAGKLLHDFKFHEGHIRSIDFHPLEF-----LLATGSADRTVKFWDLETFELIGSTRPEV 226
G + K + + L G + V+++ L E T E
Sbjct: 131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEES 190
Query: 227 T----GVHAITFHPDGRTLFSGFDDN-LKVYSWEPVICHDSVDMGWSTLGDLCINDGKLL 281
+ D + V ++ + ++ + K
Sbjct: 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF--RCHRLNLKDT 248
Query: 282 GCSFYRNSV 290
++ NS+
Sbjct: 249 NLAYPVNSI 257
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.003
Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
+ + + VN I + +FL T G D ++ W + + + +
Sbjct: 239 RCHRLNLKDTNLAYPVNSIEFSPR-HKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDS 296
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKS 101
V ++ ++ S K + + +T+ + S
Sbjct: 297 VVKIACSDNILCLATSDDTFKTN----AAIDQTIELNAS 331
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 80.3 bits (196), Expect = 2e-16
Identities = 36/323 (11%), Positives = 80/323 (24%), Gaps = 62/323 (19%)
Query: 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
+ + + H + I + T + + I + + +
Sbjct: 55 SHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD 114
Query: 64 VAFDSAEVLVLA---------------GASTGVIKLWDLEESKM---------------- 92
L G +W
Sbjct: 115 SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ 174
Query: 93 --VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD------IRKKGCIHTYKGHTRG 144
V + T+V+ G A+G + ++I + + H+ ++
Sbjct: 175 GTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233
Query: 145 INTIRFTPDGRWVVSGGFDNVVKVW----------------DLTAGKLLHDFKFHEGHIR 188
I +++F+P G + N + + H +
Sbjct: 234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 293
Query: 189 SIDFHPLEFLLATGSADRTVKFWDLETFELI----GSTRPEVTGVHAITFHPDGRTLFSG 244
S+ F+ L + D ++FWD++T E I + G +L
Sbjct: 294 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353
Query: 245 FDDNLKVY--SWEPVICHDSVDM 265
++K W + D +
Sbjct: 354 GVFDVKFLKKGWRSGMGADLNES 376
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.2 bits (188), Expect = 2e-15
Identities = 41/231 (17%), Positives = 78/231 (33%), Gaps = 43/231 (18%)
Query: 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSS------P 60
++ + S + I ++ + TG ++ V + + L + S
Sbjct: 176 TVESPMTPSQFATSVDISER--GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233
Query: 61 VDSVAFDSAEVLVLAGASTG---VIKLWDLEESKMVRT-------------LTGHKSNCT 104
+ SV F L+ + I L++ E + + + H S
Sbjct: 234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 293
Query: 105 AVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGI----NTIRFTPDGRWVVSG 160
++ F+ GE S D L+ WD++ K I T H I + + G +
Sbjct: 294 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353
Query: 161 GFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFW 211
G V+D+ KF + RS L L DR+++++
Sbjct: 354 G------VFDV---------KFLKKGWRSGMGADLNESLCCVCLDRSIRWF 389
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.0 bits (177), Expect = 6e-14
Identities = 25/224 (11%), Positives = 61/224 (27%), Gaps = 24/224 (10%)
Query: 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK------MVRTLTGHKSNCTAVEF--- 108
+ + SV+ ++ ++ + G +K+WD + + HKS V+
Sbjct: 14 DADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71
Query: 109 ----HPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN 164
A+ +L + I ++ + W + G N
Sbjct: 72 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131
Query: 165 VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP 224
+ +G FHP + + + + LE + S
Sbjct: 132 DRLLSHRLV------ATDVKGTTYIWKFHPFADESNSLTLNWS---PTLELQGTVESPMT 182
Query: 225 EVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWS 268
++ G + +++ + + + S
Sbjct: 183 PSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHS 226
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.2 bits (175), Expect = 9e-14
Identities = 42/312 (13%), Positives = 90/312 (28%), Gaps = 73/312 (23%)
Query: 13 AHSANVNCISIGKKACRFLITGGDDQKVNLW------------AIGKPTALMSLCGLSSP 60
AH A++ +S F ++ D + +W S
Sbjct: 12 AHDADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 61 VDSVAFDSAEVLVLAGAST-GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG------- 112
+ ++ D+ E+ ++A S G + + + + + K + +
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128
Query: 113 --------EFFASGCMDTNLKIWDIRKKG------------------CIHTYKGHTRGIN 146
+ + IW + + ++
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 188
Query: 147 TIRFTPDGRWVVSGGFDNVVKV------WDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLA 200
++ + G + +G + V++ L + H + IRS+ F P LLA
Sbjct: 189 SVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247
Query: 201 TGSADRTV---KFWDLETFELIGSTRPEVT-------------GVHAITFHPDGRTLFSG 244
+ ++ E E IGS V +++F+ G TL S
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 307
Query: 245 FDDN-LKVYSWE 255
D L+ + +
Sbjct: 308 GWDGKLRFWDVK 319
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.0 bits (159), Expect = 9e-12
Identities = 28/204 (13%), Positives = 51/204 (25%), Gaps = 26/204 (12%)
Query: 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF------HEGHI 187
+ K H I ++ + VS D +KVWD + H+ +
Sbjct: 6 TANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63
Query: 188 RSIDF-------HPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
+D L+AT S + F+ + + E +
Sbjct: 64 HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
W +T K + NS+ + + +
Sbjct: 124 ----------ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173
Query: 301 EPYGVGAPEPDQSICTEVKFNPPG 324
V +P T V + G
Sbjct: 174 -QGTVESPMTPSQFATSVDISERG 196
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 75.7 bits (184), Expect = 3e-15
Identities = 19/115 (16%), Positives = 44/115 (38%), Gaps = 8/115 (6%)
Query: 108 FHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGI-------NTIRFTPDGRWVVSG 160
++P G FAS D + +++ ++ + + ++PDG + S
Sbjct: 197 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 256
Query: 161 GFDNVVKVWDLTAGKLLHDFKFHEGH-IRSIDFHPLEFLLATGSADRTVKFWDLE 214
D +K+W++ K+ + + + L + SA+ + F + E
Sbjct: 257 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 71.1 bits (172), Expect = 1e-13
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 1/88 (1%)
Query: 85 WDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRG 144
H + + + P G AS D +KIW++ T TR
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 145 INT-IRFTPDGRWVVSGGFDNVVKVWDL 171
+ + + +VS + + +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 68.0 bits (164), Expect = 1e-12
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 3/93 (3%)
Query: 104 TAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163
+ P G+ T++ + Y H+ + +P G + SG
Sbjct: 21 VVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 79
Query: 164 NVVKVWDLTAG--KLLHDFKFHEGHIRSIDFHP 194
V++WD T L G ++ I +
Sbjct: 80 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS 112
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 66.1 bits (159), Expect = 5e-12
Identities = 38/267 (14%), Positives = 81/267 (30%), Gaps = 15/267 (5%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSL-----CGL 57
+ + HS +G V +W + T ++ G
Sbjct: 46 GSLTDTEIYTEHSHQTTVAKTSPSGYY-CASGDVHGNVRIWDTTQTTHILKTTIPVFSGP 104
Query: 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFAS 117
+ + V G + ++ + S
Sbjct: 105 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS 164
Query: 118 GCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLL 177
G D + I++ T+ HT+ ++++R+ PDG S G D + +++ G
Sbjct: 165 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 224
Query: 178 H-------DFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS-TRPEVTGV 229
H G + + + P +A+ SAD+T+K W++ T ++ +
Sbjct: 225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 284
Query: 230 HAITFHPDGRTLFSGFDDNLKVYSWEP 256
+ + L S + + P
Sbjct: 285 QQLGIIWTKQALVSISANG-FINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 62.2 bits (149), Expect = 9e-11
Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
Query: 140 GHTRGINT-IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFL 198
RG + TP G + V + + + H P +
Sbjct: 14 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYY 72
Query: 199 LATGSADRTVKFW 211
A+G V+ W
Sbjct: 73 CASGDVHGNVRIW 85
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 58.4 bits (139), Expect = 1e-09
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 2/85 (2%)
Query: 74 LAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK- 132
+ + + + T H T + P G + ASG + N++IWD +
Sbjct: 32 IQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT 91
Query: 133 -GCIHTYKGHTRGINTIRFTPDGRW 156
T + + I + + +
Sbjct: 92 HILKTTIPVFSGPVKDISWDSESKR 116
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.9 bits (104), Expect = 3e-05
Identities = 9/83 (10%), Positives = 17/83 (20%), Gaps = 2/83 (2%)
Query: 185 GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG 244
G + P + + +V + + P G SG
Sbjct: 18 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76
Query: 245 FDDNLKVYSWEPVICHDSVDMGW 267
V W+ +
Sbjct: 77 DVHG-NVRIWDTTQTTHILKTTI 98
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.4 bits (95), Expect = 4e-04
Identities = 5/62 (8%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 28 CRFLITGGDDQKVNLWAIGKPTALMSLCGLSS-PVDSVAFDSAEVLVLAGASTGVIKLWD 86
+ + D+ + +W + ++ + + + +++ ++ G I +
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
Query: 87 LE 88
E
Sbjct: 310 PE 311
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 75.4 bits (183), Expect = 4e-15
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 2/86 (2%)
Query: 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF-KFHEGHIRSIDF 192
GH + I + + DG+ + S + + WD++ G F H I I
Sbjct: 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Query: 193 HPLEFLLATGSADRTVKFWDLETFEL 218
L D +K +
Sbjct: 64 TSKGDLFTVSW-DDHLKVVPAGGSGV 88
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 69.6 bits (168), Expect = 3e-13
Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 2/104 (1%)
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTIR 149
+ + GH TA+ G+ S + ++ WDI + H I I+
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 150 FTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFH 193
T + + +D+ +KV +
Sbjct: 63 TTSK-GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 105
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 67.3 bits (162), Expect = 2e-12
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 99 HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH--TYKGHTRGINTIRFTPDGRW 156
H + V + P A+G +D ++ +W++ K H +
Sbjct: 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 282
Query: 157 VVSGGFDNVVKVWDLT 172
+VS G D+ +K W++
Sbjct: 283 IVSAGQDSNIKFWNVP 298
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 64.2 bits (154), Expect = 2e-11
Identities = 31/294 (10%), Positives = 69/294 (23%), Gaps = 50/294 (17%)
Query: 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLC-GLSSPVDSVAF 66
Q H+ + +S + L + + +N W I + ++ + +
Sbjct: 5 DQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Query: 67 DSAEVLVLAGASTGVIKLWDLEESK---MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123
S L +K+ S S + G+ + C
Sbjct: 64 TSKGDLFTVS-WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122
Query: 124 LKIWDIRKKGCIHTY-----------------------------------------KGHT 142
+ +Y
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182
Query: 143 RGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATG 202
+ V + + + FH + + + P LATG
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242
Query: 203 SADRTVKFWDLETFELIGSTRPEVTGVHAIT--FHPDGRTLFSGFDDN-LKVYS 253
S D +V W++ + ++ + T+ S D+ +K ++
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 64.2 bits (154), Expect = 2e-11
Identities = 17/119 (14%), Positives = 41/119 (34%), Gaps = 2/119 (1%)
Query: 97 TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW 156
++ F + + + +++ HT + + ++PD
Sbjct: 179 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR 238
Query: 157 VVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSID--FHPLEFLLATGSADRTVKFWDL 213
+ +G DN V VW++ + S++ E + + D +KFW++
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.9 bits (135), Expect = 5e-09
Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 1/95 (1%)
Query: 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG-VHAI 232
G + H I ++ L + A+ + WD+ T + I
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61
Query: 233 TFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGW 267
G +DD+LKV S +
Sbjct: 62 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVAN 96
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.7 bits (111), Expect = 3e-06
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 75 AGASTGVIKLWDLEESKMVRTLT--GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDI 129
G+ + +W++ + + H + S D+N+K W++
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.2 bits (89), Expect = 0.002
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 28 CRFLITGGDDQKVNLWAIGKPTALMSLCGLS---SPVDSVAFDSAEVLVLAGASTGVIKL 84
L TG D V +W + KP+ + + S V+SV + + +V + IK
Sbjct: 236 NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIV-SAGQDSNIKF 294
Query: 85 WDL 87
W++
Sbjct: 295 WNV 297
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 73.7 bits (179), Expect = 2e-14
Identities = 17/164 (10%), Positives = 34/164 (20%), Gaps = 4/164 (2%)
Query: 28 CRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87
+ + A + DL
Sbjct: 167 VEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226
Query: 88 EESKMVRT-LTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGIN 146
E +M + + +P L+ +D+ K I
Sbjct: 227 ETGEMAMREVRIMDVFYFSTAVNPAKTRAF--GAYNVLESFDLEKNASIKRV-PLPHSYY 283
Query: 147 TIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSI 190
++ + DG V GG + +D + S+
Sbjct: 284 SVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 68.7 bits (166), Expect = 8e-13
Identities = 23/241 (9%), Positives = 47/241 (19%), Gaps = 27/241 (11%)
Query: 113 EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRG--INTIRFTPDGRWV-VSGGFDNVVKVW 169
++ + L + D K G P GR + +
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 170 DLTAGKLLHDFKFHEGH-----IRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR- 223
DL G+ L + P LA + ++ E +
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 224 ----------PEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICH------DSVDMGW 267
+ + + DG L+ D + + +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 268 STLGDLCINDGKLLGCSFYRNSVGIWVAD--VSHVEPYGVGAPEPDQSICTEVKFNPPGS 325
N + G D G+ + + +
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241
Query: 326 H 326
Sbjct: 242 F 242
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 64.1 bits (154), Expect = 2e-11
Identities = 16/135 (11%), Positives = 32/135 (23%), Gaps = 2/135 (1%)
Query: 99 HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVV 158
+ T L D+ + +
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM-DVFYFSTAVNPAKTR 254
Query: 159 SGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFEL 218
+ G NV++ +DL + S++ + G A + +D ET E
Sbjct: 255 AFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313
Query: 219 IGSTRPEVTGVHAIT 233
G ++
Sbjct: 314 KGQVDLPGNASMSLA 328
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 56.0 bits (133), Expect = 1e-08
Identities = 25/266 (9%), Positives = 59/266 (22%), Gaps = 42/266 (15%)
Query: 29 RFLITGGDDQKVNLW--AIGKPTA---LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIK 83
T + + G+ L + + A + S ++
Sbjct: 47 IAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLE 106
Query: 84 LWDLEESKM-----------VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR-- 130
L E R T + + G D ++ +
Sbjct: 107 LTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTL 166
Query: 131 -------------------KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171
D + + DL
Sbjct: 167 VEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226
Query: 172 TAGKLLH-DFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVH 230
G++ + + + S +P + ++ +DLE I +
Sbjct: 227 ETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYY 283
Query: 231 AITFHPDGRTLFSGFDDNLKVYSWEP 256
++ DG T++ G + +++
Sbjct: 284 SVNVSTDGSTVWLGGALG-DLAAYDA 308
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.9 bits (125), Expect = 1e-07
Identities = 25/210 (11%), Positives = 59/210 (28%), Gaps = 24/210 (11%)
Query: 72 LVLAGASTGVIKLWDLEESKMVRTLT--GHKSNCTAVEFHPFGEF-FASGCMDTNLKIWD 128
+LA A + + D E+ + + +T P G +A+ +L D
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62
Query: 129 IRKKGCIHTYKGHT-----RGINTIRFTPDGRWVVSGGFDNVVKV------------WDL 171
+ + T + + +PDG+ + +++ +D
Sbjct: 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122
Query: 172 TAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHA 231
F+ I + + L D V + T + +
Sbjct: 123 ETLSRRKAFEAP-RQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY- 180
Query: 232 ITFHPDGRTLFSGFDDNLKVYSWEPVICHD 261
PD +++ + + + + D
Sbjct: 181 --AQPDVLAVWNQHESSGVMATPFYTARKD 208
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.7 bits (176), Expect = 2e-14
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 99 HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG-CIHTYKGHTRGINTIRFTPDGRWV 157
+ A E + A+G +DTN+ I+ +++ I H G+N + + +
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-L 272
Query: 158 VSGGFDNVVKVWD 170
VS G D +K W+
Sbjct: 273 VSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 70.0 bits (169), Expect = 2e-13
Identities = 12/115 (10%), Positives = 30/115 (26%), Gaps = 2/115 (1%)
Query: 99 HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVV 158
A + I+ + V
Sbjct: 172 PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 231
Query: 159 SGGFDNVVKVWDL-TAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWD 212
+G D + ++ + K++ H+ + ++ + L + AD +K W+
Sbjct: 232 TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.8 bits (153), Expect = 2e-11
Identities = 34/290 (11%), Positives = 85/290 (29%), Gaps = 54/290 (18%)
Query: 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFD 67
L+ H+ + +++ LI+G D ++ W+ S+ + S+
Sbjct: 6 LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNS 55
Query: 68 SAEVLVLAG--------------------------------ASTGVIKLWDLEESKMVRT 95
A+ + L + +
Sbjct: 56 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115
Query: 96 LTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR 155
S +AV +T + + I +P
Sbjct: 116 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 175
Query: 156 WVVSGGFDNVVKVWDLTAGKL-----------LHDFKFHEGHIRSIDFHPLEFLLATGSA 204
++ +G + ++DL + ++ ++ + + + E L+ATGS
Sbjct: 176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 235
Query: 205 DRTVKFWDLETF-ELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYS 253
D + + ++ ++I + GV+ + + + SG D +K ++
Sbjct: 236 DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.8 bits (140), Expect = 8e-10
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTI 148
++++T++GH TA+ +P SG D + W ++ H+ I ++
Sbjct: 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSL 52
Query: 149 RFTPDGRWV 157
+ +
Sbjct: 53 DNSKAQEYS 61
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.3 bits (136), Expect = 3e-09
Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 17/134 (12%)
Query: 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFH 193
+ T GH +GI + P ++SG +D + W ++ + H I S+D
Sbjct: 5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNS 55
Query: 194 PLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYS 253
+ + WD + + + + DG T DD+L +
Sbjct: 56 KAQEYSSI--------SWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQ 107
Query: 254 WEPVICHDSVDMGW 267
SV +
Sbjct: 108 SFTGDIIKSVRLNS 121
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.4 bits (131), Expect = 1e-08
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 76 GASTGVIKLWDLEES-KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDI 129
G+ I ++ ++ K+++ L HK + + S D +K W++
Sbjct: 233 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.8 bits (127), Expect = 4e-08
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 9/94 (9%)
Query: 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAIT 233
++L H I ++ +PL +GS D + W + + + ++
Sbjct: 3 DEVLKTISGHNKGITALTVNPL----ISGSYDGRIMEWSSSSMH-----QDHSNLIVSLD 53
Query: 234 FHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGW 267
+DD LKV +
Sbjct: 54 NSKAQEYSSISWDDTLKVNGITKHEFGSQPKVAS 87
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 71.4 bits (173), Expect = 1e-13
Identities = 32/232 (13%), Positives = 56/232 (24%), Gaps = 32/232 (13%)
Query: 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE 70
+ +A + + G + + ++ A+
Sbjct: 152 HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEF-----LINHPAYSQKA 206
Query: 71 VLVLAGASTGVIKLWDLEESK--MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD 128
++ TG I DL + + A + P G + +
Sbjct: 207 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL- 265
Query: 129 IRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIR 188
V V D G+ L F+ I
Sbjct: 266 ---------------------LVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEID 303
Query: 189 SIDFHP--LEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDG 238
SI+ L A + D+T+ D E+ E + S G IT G
Sbjct: 304 SINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 54.8 bits (130), Expect = 3e-08
Identities = 37/281 (13%), Positives = 70/281 (24%), Gaps = 44/281 (15%)
Query: 12 VAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEV 71
+ + + I+ + G V ++ + +P V
Sbjct: 52 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMT 111
Query: 72 LVLAGASTG---------VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
+ T + + DLE R L F + F C D
Sbjct: 112 SLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDG 168
Query: 123 NLKIWDIRKKGCIHTYKGHTRG------INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL 176
+L +G IN ++ +V + + DL++G
Sbjct: 169 SLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA 228
Query: 177 --LHDFKFHEGHIRSIDFHPLEFLLATGSAD--------------------RTVKFWDLE 214
L + R+ + P + R V D +
Sbjct: 229 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK 288
Query: 215 TFELIGSTRPEVTGVHAITFHPDGRTLF---SGFDDNLKVY 252
T E + + +I D + L S D L ++
Sbjct: 289 TGERLA-KFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIH 328
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.2 bits (87), Expect = 0.004
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 200 ATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243
A +A D E +IG + + DG +
Sbjct: 22 AHFAAVTQQFVIDGEAGRVIGMI--DGGFLPNPVVADDGSFIAH 63
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 70.5 bits (171), Expect = 2e-13
Identities = 17/129 (13%), Positives = 36/129 (27%), Gaps = 3/129 (2%)
Query: 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMV-RTLTGHKSNCTAVEFHPFGEFFASG 118
F + DL+ K + P G
Sbjct: 210 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYG 269
Query: 119 CMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLH 178
++ L +D++++ I + F G + GG N + V++ + +
Sbjct: 270 VLNR-LAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 327
Query: 179 DFKFHEGHI 187
+ K G +
Sbjct: 328 NIKLPGGDM 336
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 69.0 bits (167), Expect = 6e-13
Identities = 18/119 (15%), Positives = 37/119 (31%), Gaps = 3/119 (2%)
Query: 104 TAVEFHPFGEFFASGCMDTNLKIWDIRKKGCI-HTYKGHTRGINTIRFTPDGRWVVSGGF 162
T F + A+ + D++ + T T +P + G
Sbjct: 212 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV- 270
Query: 163 DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS 221
N + +DL KL+ + + F L G + ++ +T E + +
Sbjct: 271 LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN 328
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 66.3 bits (160), Expect = 5e-12
Identities = 25/305 (8%), Positives = 70/305 (22%), Gaps = 48/305 (15%)
Query: 12 VAHSANVNCISIGKKACRFLITGGDDQKVNLW------------------AIGKPTALMS 53
+ + + + +G+ +
Sbjct: 36 MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFA 95
Query: 54 LCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGE 113
+ V + + + ++++ + + + V +
Sbjct: 96 ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAAD 154
Query: 114 FFASGCMDTNLKIWDIRKKGCIHTYKGHTRG-------------------------INTI 148
+ ++ D++
Sbjct: 155 DGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 214
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGK-LLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
RF D + + DL GK +F + P + G +
Sbjct: 215 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-R 273
Query: 208 VKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN-LKVYSWEPVICHDSVDMG 266
+ +DL+ +LI + + F G L+ G N L V++ + + ++ +
Sbjct: 274 LAKYDLKQRKLIK-AANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332
Query: 267 WSTLG 271
+
Sbjct: 333 GGDMS 337
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 65.1 bits (157), Expect = 1e-11
Identities = 21/236 (8%), Positives = 61/236 (25%), Gaps = 25/236 (10%)
Query: 150 FTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG-HIRSIDFHP-LEFLLATGSADRT 207
+++ + N + V D+ + + + + P +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 208 VKFWDLETFELI------GSTRPEVTGVHAITFHPDGRTLFSGFDDN------------- 248
+ DL+T + +++ PDG+ +++ +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 249 LKVYSWEPVICHDSVDMGWSTLGDLCI---NDGKLLGCSFYRNSVGIWVADVSHVEPYGV 305
L+V+S + V + +DG L + + + P
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183
Query: 306 GAPEPDQSIC-TEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDS 360
+ + + H + I R + + ++ + +
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT 239
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 59.4 bits (142), Expect = 9e-10
Identities = 28/324 (8%), Positives = 67/324 (20%), Gaps = 34/324 (10%)
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT-GHKSNCTAVEFHPFGEF-FASGCMD 121
A + ++ + + D+ + ++ K P +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 122 TNLKIWDIRKKGCIH------TYKGHTRGINTIRFTPDGRWVVSGGFD------------ 163
++ D+ R + + +PDG+ V +
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 164 NVVKVWDLTAGKLLHDFKFHEGH--IRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS 221
++V+ G + + + L G + + +
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181
Query: 222 TRPEVTGVHAITFHPDGRTLF-SGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKL 280
PD + + + D + L
Sbjct: 182 R----NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 237
Query: 281 LGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSG 340
E Y G P N + L++ +I +
Sbjct: 238 KTGKT------HTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLD 291
Query: 341 FRSTSPDYETKDIKTIYVDSTGGK 364
+ K +Y+ T
Sbjct: 292 HTYYCVAF-DKKGDKLYLGGTFND 314
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.9 bits (169), Expect = 3e-13
Identities = 35/225 (15%), Positives = 68/225 (30%), Gaps = 12/225 (5%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGD-DQKVNLWAIGKPTALMSLCGLSS 59
+ EF + ++ IS + R + G D + +L + G S
Sbjct: 101 NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ 160
Query: 60 PVDSVAFDSAEVLVLAGASTGVIK----LWDLEESKMVRTLTGHKSNCTAVEFHP----F 111
+++ + + + S RT S VEF P F
Sbjct: 161 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF 220
Query: 112 GEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171
S + I + +G D + + G D ++VWD+
Sbjct: 221 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV 280
Query: 172 TAGKLLHDFKFHEGHIRSID---FHPLEFLLATGSADRTVKFWDL 213
T K + + + + + + + S D T+ F++L
Sbjct: 281 TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.6 bits (155), Expect = 2e-11
Identities = 41/296 (13%), Positives = 90/296 (30%), Gaps = 28/296 (9%)
Query: 59 SPVDSVAFD-SAEVLVLAGASTGVIKLWDLEESKM--VRTLTGHKSN-CTAVEFHPF--G 112
+ +++D + + + ++ D +SK+ V TGH S+ T V+F P
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 113 EFFASGCMDTNLKIWDIRKKGCIHT--------YKGHTRGINTIRFTPDGRWVV--SGGF 162
++ SG + +W ++ ++ I+ I + +GR + G
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137
Query: 163 DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGST 222
DN +G L + H I + + + D + ++
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197
Query: 223 RPEVTG----VHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLG------D 272
V + F PD + K+ ++ +
Sbjct: 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257
Query: 273 LCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSL 328
L D + ++ +W DV+ + + Q +V G+ +
Sbjct: 258 LSWLDSQKFATVGADATIRVW--DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 311
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.1 bits (146), Expect = 2e-10
Identities = 28/185 (15%), Positives = 57/185 (30%), Gaps = 16/185 (8%)
Query: 99 HKSNCTAVEFHPFGEFFASGCMDTN-LKIWDI--RKKGCIHTYKGH-TRGINTIRFTP-- 152
++ T + + P A C + ++ D K + + GH + + T++F+P
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 153 DGRWVVSGGFDNVVKVWDLTAGKLLHDFKF--------HEGHIRSIDFHP--LEFLLATG 202
+++ SG V VW T K + + G I I + +
Sbjct: 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135
Query: 203 SADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDS 262
D F ++ +G ++A D+ V ++ S
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS 195
Query: 263 VDMGW 267
Sbjct: 196 ASDRT 200
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.4 bits (139), Expect = 2e-09
Identities = 41/262 (15%), Positives = 88/262 (33%), Gaps = 23/262 (8%)
Query: 14 HSANVNCISIG-KKACRFLITGGDDQKVNLWAIGKPTALMSLC--------GLSSPVDSV 64
S+ V + K ++L +G + KV +W S+ L+ P+ +
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 65 AF--DSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
++ + + V+ + + ++GH A + D
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 123 NLK----IWDIRKKGCIHTYKGHTRGINTIRFTPD-GRWVVSGGFDNVVKVWDLTAGKLL 177
+ T+ + + F+PD G +V++ G D + +D +G+ L
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241
Query: 178 HDFKFHEGHIRSIDFHPLEF---LLATGSADRTVKFWDLETFELIGSTRPEVTGVH---- 230
+ + ++ F AT AD T++ WD+ T + + + +
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 301
Query: 231 AITFHPDGRTLFSGFDDNLKVY 252
+ +GR + D L Y
Sbjct: 302 GVVATGNGRIISLSLDGTLNFY 323
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 60.0 bits (144), Expect = 6e-10
Identities = 23/238 (9%), Positives = 45/238 (18%), Gaps = 33/238 (13%)
Query: 43 WAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN 102
I P A G + SA +L + + + +
Sbjct: 110 ADIELPDAPRFSVGPRVHIIGNCASSACLLF-FLFGSSAAAGLSVPGASDDQLTKSASC- 167
Query: 103 CTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH------TYKGHTRGINTIRFTPDGRW 156
G +L D+ + G
Sbjct: 168 --FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML 225
Query: 157 VVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF------ 210
V + + + +E ++ +F F + +
Sbjct: 226 VWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH 285
Query: 211 -------------WDLETFELIGSTRPEVTGVHAITFHPDGRTLF---SGFDDNLKVY 252
+ G AI DG + S + L +Y
Sbjct: 286 SRSCLAAAENTSSVTASVGQTSG-PISNGHDSDAIIAAQDGASDNYANSAGTEVLDIY 342
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 56.9 bits (136), Expect = 5e-09
Identities = 19/224 (8%), Positives = 41/224 (18%), Gaps = 30/224 (13%)
Query: 55 CGLSSPVDSVAF--DSAEVLVLAGAS---TGVIKLWDLEESKMVRTLTGHKSNCTAVEF- 108
S + A T + + G +
Sbjct: 16 AASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHS 75
Query: 109 -------HPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGI-------NTIRFTPDG 154
A G ++++D I + + I
Sbjct: 76 GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS 135
Query: 155 RWVVSGGF-DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213
++ F + + K GS ++ DL
Sbjct: 136 ACLLFFLFGSSAAAGLSVPGASDDQLTKSASC---FHIHPGAAATHYLGSCPASLAASDL 192
Query: 214 ET------FELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKV 251
T + A + G +++ L+
Sbjct: 193 AAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQG 236
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.8 bits (115), Expect = 2e-06
Identities = 19/177 (10%), Positives = 45/177 (25%), Gaps = 24/177 (13%)
Query: 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88
+ +G + + + +LV A AS+ +
Sbjct: 186 SLAASDLAAAPAAAGIVGAQCTG----AQNCSSQAAQANYPGMLVWAVASSILQGDIPAA 241
Query: 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHT------ 142
+ M + G++S A F G + +T+ + +
Sbjct: 242 GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA 301
Query: 143 ------------RGINTIRFTPDGRW--VVSGGFDNVVKVWDLTAGKLLHDFKFHEG 185
+ I DG + V+ ++D + + + +G
Sbjct: 302 SVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 60.2 bits (145), Expect = 7e-10
Identities = 18/125 (14%), Positives = 33/125 (26%), Gaps = 7/125 (5%)
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
+ + D ++ R + GR++ G D V + DL +
Sbjct: 41 AGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA 99
Query: 181 KF-----HEGHIRSIDFHP-LEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITF 234
+ S ++ +A D ET E +
Sbjct: 100 EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY 159
Query: 235 HPDGR 239
HP+ R
Sbjct: 160 HPEPR 164
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 53.6 bits (128), Expect = 8e-08
Identities = 11/132 (8%), Positives = 31/132 (23%), Gaps = 6/132 (4%)
Query: 128 DIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHI 187
++R+ +H + + + V+ + + D + ++
Sbjct: 6 EMRESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV- 64
Query: 188 RSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG-----VHAITFHPDGRTLF 242
L D V DL E ++ + + +
Sbjct: 65 HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI 124
Query: 243 SGFDDNLKVYSW 254
+G +
Sbjct: 125 AGAYWPPQYVIM 136
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 51.7 bits (123), Expect = 3e-07
Identities = 29/242 (11%), Positives = 57/242 (23%), Gaps = 39/242 (16%)
Query: 30 FLITGGDDQKVNLW--AIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87
F +T D ++ L + + ++ V ++ + G + + DL
Sbjct: 34 FSVTLRDAGQIALIDGSTYEIKTVLDT---GYAVHISRLSASGRYLFVIGRDGKVNMIDL 90
Query: 88 EESKM-----VRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGCIHTYKGH 141
+ ++ + +S T+ A I D
Sbjct: 91 WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR 150
Query: 142 TRGINT-----------IRFTPDG-RWVVSGGFDNVVKVWDLT-----------AGKLLH 178
+ I + ++V+ + + D T A + LH
Sbjct: 151 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH 210
Query: 179 DFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDG 238
D H I L +T + G A HP
Sbjct: 211 DGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT-----GGQTPHPGRGANFVHPTF 265
Query: 239 RT 240
Sbjct: 266 GP 267
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 60.0 bits (144), Expect = 7e-10
Identities = 30/248 (12%), Positives = 65/248 (26%), Gaps = 26/248 (10%)
Query: 67 DSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKI 126
D + + G I L D + K+V+ + + G + D + +
Sbjct: 29 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDM 87
Query: 127 WDIRKKGC-----IHTYKGHTRGINTIRFTPDGRWV-VSGGFDNVVKVWDLTAGKLLHDF 180
D+ K I ++ + R+ + + D +
Sbjct: 88 IDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV 147
Query: 181 KFHEGHIRSIDFHPL-------------EFLLATGSADRTVKFWDLETFELIGSTRPEVT 227
+ + +HP EF++ + + + L ++
Sbjct: 148 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP 207
Query: 228 GVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYR 287
+ + R + + V DS D S L D+ G +F
Sbjct: 208 FLADGGWDSSHRYFMTAA------NNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVH 261
Query: 288 NSVGIWVA 295
G +
Sbjct: 262 PKYGPVWS 269
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 50.3 bits (119), Expect = 7e-07
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 10/129 (7%)
Query: 150 FTPDGRW--VVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
D V+ + + D + K++ L D
Sbjct: 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDAR 84
Query: 208 VKFWDLETFELIGSTRPEVTGVHA-----ITFHPDGRTLFSG--FDDNLKVYSWEPVICH 260
+ DL E ++ + R +G + + E +
Sbjct: 85 IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK 144
Query: 261 DSVDMGWST 269
V T
Sbjct: 145 QIVSTRGMT 153
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 42.2 bits (98), Expect = 3e-04
Identities = 18/140 (12%), Positives = 36/140 (25%), Gaps = 24/140 (17%)
Query: 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFA--- 116
PV S + + L G + K V L G ++ HP
Sbjct: 266 PVWSTSHLGDGSISLIGTDPKNHPQYA---WKKVAELQGQGGGSLFIKTHPKSSHLYVDT 322
Query: 117 ----SGCMDTNLKIWDIRKKGCIHTYKGHT---------RGINTIRFTPDGRWVV----- 158
+ ++ ++D++ + + + + G V
Sbjct: 323 TFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWN 382
Query: 159 SGGFDNVVKVWDLTAGKLLH 178
+ + V D KL
Sbjct: 383 GKNDSSALVVVDDKTLKLKA 402
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 42.2 bits (98), Expect = 3e-04
Identities = 21/168 (12%), Positives = 37/168 (22%), Gaps = 27/168 (16%)
Query: 92 MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFT 151
R V + + T+ K + +G G I+
Sbjct: 253 PGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH 312
Query: 152 PDGRWVV-------SGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHP----LEF--- 197
P + V V+DL + + E+
Sbjct: 313 PKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR 372
Query: 198 -------LLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDG 238
+ + + D +T +L V IT P G
Sbjct: 373 GDEVWFSVWNGKNDSSALVVVDDKTLKLKA----VVKDPRLIT--PTG 414
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 54.1 bits (128), Expect = 4e-08
Identities = 22/154 (14%), Positives = 46/154 (29%), Gaps = 3/154 (1%)
Query: 115 FASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWV-VSGGFDNVVKVWDLTA 173
+ + N+ + D+ T +PDG V V+ N V + D
Sbjct: 5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63
Query: 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAIT 233
++ + + T A T+ D + + G+ + + +
Sbjct: 64 NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS-PLGLA 122
Query: 234 FHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGW 267
PDG+ L+ + + V V +
Sbjct: 123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV 156
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 52.6 bits (124), Expect = 1e-07
Identities = 14/89 (15%), Positives = 20/89 (22%), Gaps = 2/89 (2%)
Query: 98 GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWV 157
S + + D I TPDG+ V
Sbjct: 200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKV 258
Query: 158 -VSGGFDNVVKVWDLTAGKLLHDFKFHEG 185
V+ F N V V D + +
Sbjct: 259 YVALSFCNTVSVIDTATNTITATMAVGKN 287
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 52.2 bits (123), Expect = 1e-07
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 197 FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF--SGFDDNLKVYSW 254
F S + D+ + ++ T P + PDG ++ + +++ +
Sbjct: 3 FAYIANSESDNISVIDVTSNKVTA-TIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDT 61
Query: 255 EPVICHDSVDMGWS 268
+V G S
Sbjct: 62 ATNNVIATVPAGSS 75
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 49.9 bits (117), Expect = 7e-07
Identities = 31/253 (12%), Positives = 67/253 (26%), Gaps = 3/253 (1%)
Query: 75 AGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEF-FASGCMDTNLKIWDIRKKG 133
A + + I + D+ +K+ T+ SN P G + + ++ I D
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFH 193
I T + + V+ + + V D T+ + K + +
Sbjct: 66 VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALS 124
Query: 194 PLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYS 253
P L + + + +T I PDG ++ D++ +
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184
Query: 254 WEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQS 313
+ V + + + + + A P
Sbjct: 185 IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP 244
Query: 314 ICTEVKFNPPGSH 326
+ P G
Sbjct: 245 DPAGIAVTPDGKK 257
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 47.9 bits (112), Expect = 3e-06
Identities = 38/267 (14%), Positives = 77/267 (28%), Gaps = 7/267 (2%)
Query: 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAF 66
K+ + +N I + + V++ + ++ SSP
Sbjct: 23 KVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVS 82
Query: 67 DSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKI 126
+ + + ++ + + D + + T + + P G+
Sbjct: 83 PDGKQVYVTNMASSTLSVIDTTSNTVAGT-VKTGKSPLGLALSPDGKKLYVTNNGDKTVS 141
Query: 127 WDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGH 186
+ R I TPDG V FD++ T + D E
Sbjct: 142 VINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAA 201
Query: 187 IRSIDFHPLEFLLATGSAD---RTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF- 242
I +P + D TV D T ++ P I PDG+ ++
Sbjct: 202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA-RIPVGPDPAGIAVTPDGKKVYV 260
Query: 243 -SGFDDNLKVYSWEPVICHDSVDMGWS 268
F + + V ++ +G +
Sbjct: 261 ALSFCNTVSVIDTATNTITATMAVGKN 287
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 48.4 bits (115), Expect = 3e-06
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 5/95 (5%)
Query: 150 FTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHP-LEFLLATGSADRTV 208
F D G N K L + + H HI D ++L A+ V
Sbjct: 40 FNVDS-ATGWG-ITNESKEI-LGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRV 96
Query: 209 KFWDLETFELIGSTR-PEVTGVHAITFHPDGRTLF 242
L+ + T P V +H + +T +
Sbjct: 97 ARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNY 131
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 45.7 bits (108), Expect = 2e-05
Identities = 22/169 (13%), Positives = 40/169 (23%), Gaps = 33/169 (19%)
Query: 105 AVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR-WVVSGGFD 163
G F G + + + + + +PDG+ ++ +G
Sbjct: 222 IAAAVKAGNFKTIG-DSKVPVVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLS 279
Query: 164 NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE-------------FLLATGSADRTVKF 210
V V + KL F+ +I P T D V
Sbjct: 280 PTVSVIAID--KLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCK 337
Query: 211 WDLE-TFELIGSTRPEVTG--------------VHAITFHPDGRTLFSG 244
W++ + R + DG+ L
Sbjct: 338 WNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL 386
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 44.9 bits (106), Expect = 4e-05
Identities = 27/281 (9%), Positives = 67/281 (23%), Gaps = 42/281 (14%)
Query: 71 VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130
+G G +++ + + + + F+ G + + +I
Sbjct: 12 YGFWSGGHQGEVRVLGVPSMRELMRIP---------VFNVDSAT-GWGITNESKEILGGD 61
Query: 131 KKGCIHTYKGHTRGINTIRFTPDGRWV-VSGGFDNVVKVWDLTAGKLLHDFKFHEGH-IR 188
++ H I+ DG+++ ++ + V L K I
Sbjct: 62 QQY--LNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIH 119
Query: 189 SIDFHP---LEFLLATGS----------------ADRTVKFWDLETFELIGSTRPEVTGV 229
+ ++ + D ET ++ + +
Sbjct: 120 GLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNL 178
Query: 230 HAITFHPDGRTLFSGFDDNLKVYSWEPV--ICHDSVDMGWSTLGDLCINDGKLLGCSFYR 287
G+ S ++ + D V + + G
Sbjct: 179 DNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFK----TI 234
Query: 288 NSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSL 328
+ V D + P P +P G + +
Sbjct: 235 GDSKVPVVDGRGESEFTRYIPVPKNPHGLNT--SPDGKYFI 273
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 46.0 bits (107), Expect = 1e-05
Identities = 25/282 (8%), Positives = 55/282 (19%), Gaps = 30/282 (10%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS- 63
L + V V + + + + +V + I ++ S+ S
Sbjct: 26 ALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85
Query: 64 --VAFDSAEVLVLA-----GASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFA 116
++ D V G + L + + + +
Sbjct: 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVP 145
Query: 117 SGCMDTNLKIWDIRKKGCIHTYKGHT--------RGINTIRFTPDGRWVVSGGFDNVVKV 168
+ D + R + V V
Sbjct: 146 ALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE 205
Query: 169 WDLTAGK---------LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET---F 216
G + +F L A + + +
Sbjct: 206 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV 265
Query: 217 ELIGSTRPEVTGVHAITFHPDGRTLFSG--FDDNLKVYSWEP 256
+P T G+ L + ++ VY
Sbjct: 266 LSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 307
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 44.4 bits (103), Expect = 5e-05
Identities = 14/116 (12%), Positives = 34/116 (29%), Gaps = 6/116 (5%)
Query: 158 VSGGFDNVVKVWDLTAGKLLHDFKF--HEGHIRSIDFHP-LEFLLATGSADRTVKFWDLE 214
++ + VW+L L + G ++ + P +L + V + +
Sbjct: 8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67
Query: 215 TFELIGSTRPE---VTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGW 267
+ + E + I+ G+ +F G + V +
Sbjct: 68 PDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV 123
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 6/84 (7%)
Query: 196 EFLLATGSADRTVKFWDLET---FELIGSTRPEVTGVHAITFHPDGRTLFSG--FDDNLK 250
+ + + + W+L L V + PD R L+ G + +
Sbjct: 4 QTVYIASPESQQIHVWNLNHEGALTLT-QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVL 62
Query: 251 VYSWEPVICHDSVDMGWSTLGDLC 274
Y P + + G L
Sbjct: 63 AYRIAPDDGALTFAAESALPGSLT 86
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.5 bits (90), Expect = 0.001
Identities = 25/216 (11%), Positives = 54/216 (25%), Gaps = 2/216 (0%)
Query: 33 TGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM 92
G + V L T ++ GL P +A D A + + + V+ L ++
Sbjct: 32 EGMYGRVVKLATGSTGTTVLPFNGLYQPQG-LAVDGAGTVYVTDFNNRVVTLAAGSNNQT 90
Query: 93 VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP 152
V G + G + + + + K + +
Sbjct: 91 VLPFDGLNYPEG-LAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN 149
Query: 153 DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWD 212
G V+ +N V + + + I + T V
Sbjct: 150 SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL 209
Query: 213 LETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN 248
+ + A+ D + ++
Sbjct: 210 AGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND 245
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 38.3 bits (87), Expect = 0.003
Identities = 15/117 (12%), Positives = 28/117 (23%), Gaps = 4/117 (3%)
Query: 82 IKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGH 141
+ ++ R N A I
Sbjct: 153 VYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS 212
Query: 142 TRGINTIRFTPDGRWVV---SGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPL 195
T T P+G V+ S G +V+ + G+ +G ++ + P
Sbjct: 213 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY 268
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Length = 314 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Score = 38.5 bits (88), Expect = 0.003
Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 12/129 (9%)
Query: 126 IWDIRKKGCIHTYKGHTRGINTIRFTPDG-----RWVVSGGFDNVVKVWDLTAGKLLHDF 180
I+ G + + N I + +V+ + +D+ + +
Sbjct: 155 IYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK 214
Query: 181 KF-------HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAIT 233
K HEG +DF LL ++ + + + R +
Sbjct: 215 KVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLH 274
Query: 234 FHPDGRTLF 242
F P +T+F
Sbjct: 275 FKPQTKTIF 283
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1072 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.94 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.92 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.91 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.9 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.89 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.87 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.87 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.87 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.86 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.84 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.84 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.79 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.73 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.7 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.62 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.6 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.55 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.52 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.47 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.45 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.37 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.36 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.34 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.34 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.33 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.31 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.3 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.24 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.22 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.04 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.97 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.94 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.91 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.88 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.73 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.66 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.64 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.61 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 98.53 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.49 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.33 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.93 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.92 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.87 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.56 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.53 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.42 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.35 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.27 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.0 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.98 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.72 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.34 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.76 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.22 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.16 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 94.62 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 94.4 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.66 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 92.6 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 91.5 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 90.39 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 87.41 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 84.76 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.6e-39 Score=283.79 Aligned_cols=288 Identities=21% Similarity=0.362 Sum_probs=254.5
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCC-----EEEEEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf 66724899854799869999911899399999789909999879994-----2799507998947999938999999998
Q 001472 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT-----ALMSLCGLSSPVDSVAFDSAEVLVLAGA 77 (1072)
Q Consensus 3 ktG~~Ik~L~gHsg~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~~-----~i~sl~~hs~~ItsLafSPdg~~LatGS 77 (1072)
+..+.++.+ .|...|.|++|+|++ ++|++|+ ||.|+|||+.... .......|...|.+++|+|++++|++++
T Consensus 40 ~~~~~~~~~-~H~~~V~~v~fs~~g-~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~ 116 (337)
T d1gxra_ 40 RHARQINTL-NHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116 (337)
T ss_dssp SEEEEEEEE-CCSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE
T ss_pred CCCEEEEEC-CCCCCEEEEEECCCC-CEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEE
T ss_conf 875499987-999928999998999-9999997-9988997736776331168764048899689999867998898861
Q ss_pred CCCEEEEEECCCC--EEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCC
Q ss_conf 6991999986999--06999807898827999937998999996898099998899907999816898748999968999
Q 001472 78 STGVIKLWDLEES--KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR 155 (1072)
Q Consensus 78 ~DGsI~IWDl~tg--k~i~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~ 155 (1072)
.||.|++||+... +....+..|...+.++.|+|++.++++++.++.|.+|++.+++.......|...+.+++|++++.
T Consensus 117 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~ 196 (337)
T d1gxra_ 117 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 196 (337)
T ss_dssp SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 23321111111111111111111111111111111111111111111111111111111111111111111012344432
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEE
Q ss_conf 99999669929999989991689953048865899985999699999789939999889980887407998784799991
Q 001472 156 WVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFH 235 (1072)
Q Consensus 156 ~LvTGS~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tgk~i~~l~~h~~~VtsIafS 235 (1072)
++++++.|+.+++||+++++.+..+. +.+.|.+++|+|++.+|++++.|+.+++||+...+.. ....|...|.+++|+
T Consensus 197 ~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s 274 (337)
T d1gxra_ 197 KLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFA 274 (337)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCC-CCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEEC
T ss_conf 11223566553211111100000246-6661579997153030000002564211111111100-001245654169998
Q ss_pred CCCCEEEEEEC-CCEEEEEECCCEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 79999999979-9499999358722101126887045699459999999986993999984
Q 001472 236 PDGRTLFSGFD-DNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1072)
Q Consensus 236 PDGk~LasGsd-g~I~Iwdl~s~~~~~~i~~~~s~is~l~spDGklLasgs~DGsIrIWDi 295 (1072)
|+|++|++++. +.+++|++..............+....+++++++|++++.||.|+||++
T Consensus 275 ~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 275 YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEEE
T ss_conf 9999999994899699998999979999269998799999279999999908996999977
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.8e-37 Score=270.94 Aligned_cols=289 Identities=21% Similarity=0.414 Sum_probs=265.5
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 72489985479986999991189939999978990999987999427995079989479999389999999986991999
Q 001472 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1072)
Q Consensus 5 G~~Ik~L~gHsg~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~I 84 (1072)
....+.|.||.+.|++++|+|++ .+|++|+.||.|+|||+.+++.+..+..|...|.+++|++++.+++.+..++.+.+
T Consensus 7 ~~~~~~L~GH~~~I~~l~~sp~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~ 85 (317)
T d1vyhc1 7 PPEKYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL 85 (317)
T ss_dssp SSCSCEEECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred CCCCEEECCCCCCEEEEEECCCC-CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 98448985888876899993898-99999938992999989999799999578886777763011110111111111011
Q ss_pred EECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 98699906999807898827999937998999996898099998899907999816898748999968999999996699
Q 001472 85 WDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN 164 (1072)
Q Consensus 85 WDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~LvTGS~DG 164 (1072)
|+.........+..|...+.++.|+++++.+++++.|+.+.+||++++..+..+..|...+.+++|++++.+|++++.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 165 (317)
T d1vyhc1 86 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 165 (317)
T ss_dssp EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEECCCCCCEEEEEECCC
T ss_conf 10011111111000000000000169985577652675235751144303468716777630000166799999992798
Q ss_pred EEEEEECCCCCEEEEEEECCCCEEEEEECCCC--------------------CEEEEEECCCEEEEEECCCCCEEEEECC
Q ss_conf 29999989991689953048865899985999--------------------6999997899399998899808874079
Q 001472 165 VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE--------------------FLLATGSADRTVKFWDLETFELIGSTRP 224 (1072)
Q Consensus 165 sI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg--------------------~lLaTgS~DGtIrIWDl~tgk~i~~l~~ 224 (1072)
.|++|+...++....+..|...+.++.|+|++ .++++++.|+.|++|++.+++.+..+..
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 245 (317)
T d1vyhc1 166 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245 (317)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEEEC
T ss_conf 29997512540347882477873379986325641110345630343025886147516997899988899968899968
Q ss_pred CCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCEEECCCCCCCCE-EEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 987847999917999999997-994999993587221011268870-4569945999999998699399998
Q 001472 225 EVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWST-LGDLCINDGKLLGCSFYRNSVGIWV 294 (1072)
Q Consensus 225 h~~~VtsIafSPDGk~LasGs-dg~I~Iwdl~s~~~~~~i~~~~s~-is~l~spDGklLasgs~DGsIrIWD 294 (1072)
|...+.+++|+|++.+|++++ ++.|++|++........+..+... ....+++++++|++++.||.|+|||
T Consensus 246 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 899879999879999999997989499999999919999928999889999949999999992899499829
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.3e-37 Score=270.25 Aligned_cols=286 Identities=21% Similarity=0.395 Sum_probs=238.6
Q ss_pred EEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE------------------CCCCCEEEEEECCC
Q ss_conf 899854799869999911899399999789909999879994279950------------------79989479999389
Q 001472 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLC------------------GLSSPVDSVAFDSA 69 (1072)
Q Consensus 8 Ik~L~gHsg~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~~~i~sl~------------------~hs~~ItsLafSPd 69 (1072)
+....+|.+.|+|++|+|+| ++|++|+ |+.|+||++.++..+..+. .|...|.+++|+|+
T Consensus 55 l~~~~~H~~~V~~l~fs~dg-~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 132 (388)
T d1erja_ 55 LHKSLDHTSVVCCVKFSNDG-EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 132 (388)
T ss_dssp EEEEEECSSCCCEEEECTTS-SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred EEEECCCCCCEEEEEECCCC-CEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 07607999968999999999-9999994-994899981364057663166544324432111014677898899998899
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEE
Q ss_conf 99999998699199998699906999807898827999937998999996898099998899907999816898748999
Q 001472 70 EVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIR 149 (1072)
Q Consensus 70 g~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~l~~h~~~VtsIa 149 (1072)
+++|++|+.||.|++|+...++.+..+.+|...|.++.|++++..+++++.++.+++||............+.. ..++.
T Consensus 133 ~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~ 211 (388)
T d1erja_ 133 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVA 211 (388)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC-EEEEE
T ss_pred CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC-CCCCC
T ss_conf 98012134441111211111111111111111111101111111111222101565410111111000012454-42112
Q ss_pred EC-CCCCEEEEEECCCEEEEEECCCCCEEEEEE-------ECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE---
Q ss_conf 96-899999999669929999989991689953-------0488658999859996999997899399998899808---
Q 001472 150 FT-PDGRWVVSGGFDNVVKVWDLTAGKLLHDFK-------FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFEL--- 218 (1072)
Q Consensus 150 fS-PDG~~LvTGS~DGsI~IWDl~tgk~i~~l~-------~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tgk~--- 218 (1072)
+. +++.+|++++.||.|++|+..++.....+. .|.+.|.+++|+|++.+|++++.||.|++||+.....
T Consensus 212 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 291 (388)
T d1erja_ 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 291 (388)
T ss_dssp ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred CCCCCCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCC
T ss_conf 36887875899738981999634557300010244333457789878999979999999997899289875157764321
Q ss_pred ---------EEEECCCCCCEEEEEEECCCCEEEEEEC-CCEEEEEECCCEEECCCCCCCCEEEEEE-------ECCCCEE
Q ss_conf ---------8740799878479999179999999979-9499999358722101126887045699-------4599999
Q 001472 219 ---------IGSTRPEVTGVHAITFHPDGRTLFSGFD-DNLKVYSWEPVICHDSVDMGWSTLGDLC-------INDGKLL 281 (1072)
Q Consensus 219 ---------i~~l~~h~~~VtsIafSPDGk~LasGsd-g~I~Iwdl~s~~~~~~i~~~~s~is~l~-------spDGklL 281 (1072)
......|...+.+++|+|+|.+|++|+. +.|++|++..+.+...+..+...+..+. .+++.+|
T Consensus 292 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l 371 (388)
T d1erja_ 292 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 371 (388)
T ss_dssp -------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred CCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCEE
T ss_conf 01344420011012455327899988999999999698979999999996999996889978999984674258999999
Q ss_pred EEEECCCEEEEEECC
Q ss_conf 999869939999847
Q 001472 282 GCSFYRNSVGIWVAD 296 (1072)
Q Consensus 282 asgs~DGsIrIWDid 296 (1072)
++++.||.|+||++.
T Consensus 372 ~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 372 ATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEETTSEEEEEEEE
T ss_pred EEEECCCEEEEEEEE
T ss_conf 999189979997621
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6e-37 Score=267.43 Aligned_cols=282 Identities=14% Similarity=0.182 Sum_probs=243.5
Q ss_pred CCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEE
Q ss_conf 47998699999118993999997899099998799942799507998947999938999999998699199998699906
Q 001472 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM 92 (1072)
Q Consensus 13 gHsg~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~IWDl~tgk~ 92 (1072)
.+.+.+.+++++|+| ..|+.+. ++.+.+|++.+......+.+|...|.+++|+|+|++|++|+.||.|++||+..+..
T Consensus 15 ~~r~~~~~~a~~~~g-~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~ 92 (311)
T d1nr0a1 15 TARGTAVVLGNTPAG-DKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 92 (311)
T ss_dssp CCTTCCCCCEECTTS-SEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred CCCCCEEEEEECCCC-CEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCC
T ss_conf 778875999996998-9999996-99999999999966179747888889999948999672255673674663101111
Q ss_pred --EEEEECCCCCEEEEEECCCCCEEEEEECC--CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCE-EEEEECCCEEE
Q ss_conf --99980789882799993799899999689--80999988999079998168987489999689999-99996699299
Q 001472 93 --VRTLTGHKSNCTAVEFHPFGEFFASGCMD--TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW-VVSGGFDNVVK 167 (1072)
Q Consensus 93 --i~tl~~h~~~VtsIafSPdgk~LaSgs~D--GsI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~-LvTGS~DGsI~ 167 (1072)
...+..|...|.+++|+|+++++++++.+ ..+.+|++..++....+.+|...|.+++|+|++.+ |++|+.|+.|+
T Consensus 93 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~ 172 (311)
T d1nr0a1 93 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA 172 (311)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 00001343357543323331110001111221111111111111111111111111111111211101200011221111
Q ss_pred EEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC-------CCCCCEEEEEEECCCCE
Q ss_conf 99989991689953048865899985999699999789939999889980887407-------99878479999179999
Q 001472 168 VWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR-------PEVTGVHAITFHPDGRT 240 (1072)
Q Consensus 168 IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tgk~i~~l~-------~h~~~VtsIafSPDGk~ 240 (1072)
+||+++++....+..|...|.++.|+|++.++++++.|+.|++||+..+.....+. .|...|.+++|+|++++
T Consensus 173 i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~ 252 (311)
T d1nr0a1 173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 252 (311)
T ss_dssp EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 11111111111111111111112347642212111111111000124464112221111111002465321024788999
Q ss_pred EEEEEC-CCEEEEEECCCEEECCCCCCCCEE--EEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 999979-949999935872210112688704--56994599999999869939999847
Q 001472 241 LFSGFD-DNLKVYSWEPVICHDSVDMGWSTL--GDLCINDGKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 241 LasGsd-g~I~Iwdl~s~~~~~~i~~~~s~i--s~l~spDGklLasgs~DGsIrIWDid 296 (1072)
|++|+. +.+++|+++.+.+...+..+.... ...+.+++.+|++++.||.|++||.+
T Consensus 253 l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred EEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEECC
T ss_conf 99993799699999999969999979998633299999519999999899979999588
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=9.3e-37 Score=266.09 Aligned_cols=244 Identities=14% Similarity=0.196 Sum_probs=214.3
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCC--EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCE
Q ss_conf 799869999911899399999789909999879994--279950799894799993899999999869919999869990
Q 001472 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT--ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK 91 (1072)
Q Consensus 14 Hsg~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~~--~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~IWDl~tgk 91 (1072)
+..+|+|++|+|++ .+|++|+.||.|+||+...++ .+..+.+|..+|.+++|+|++++|++++.|+.|++||+.++.
T Consensus 6 ~~~pIt~~~~s~dg-~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~ 84 (371)
T d1k8kc_ 6 LVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 84 (371)
T ss_dssp CSSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred CCCCEEEEEECCCC-CEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCC
T ss_conf 99883899998999-99999948898999988899789999955889988899997999999999799939998620332
Q ss_pred EE--EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEE----EEEEECCCCCEEEEEECCCCCEEEEEECCCE
Q ss_conf 69--99807898827999937998999996898099998899907----9998168987489999689999999966992
Q 001472 92 MV--RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC----IHTYKGHTRGINTIRFTPDGRWVVSGGFDNV 165 (1072)
Q Consensus 92 ~i--~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~----i~~l~~h~~~VtsIafSPDG~~LvTGS~DGs 165 (1072)
.. ..+..|...|.+++|+|++++|++++.|+.+++|++..... ......|...|.+++|+|++.+|++|+.|+.
T Consensus 85 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~ 164 (371)
T d1k8kc_ 85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164 (371)
T ss_dssp EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCE
T ss_conf 11001223221100011111112110000025763025442033433111001011122211111111111000134767
Q ss_pred EEEEECCCC------------------CEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCC
Q ss_conf 999998999------------------16899530488658999859996999997899399998899808874079987
Q 001472 166 VKVWDLTAG------------------KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVT 227 (1072)
Q Consensus 166 I~IWDl~tg------------------k~i~~l~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tgk~i~~l~~h~~ 227 (1072)
|++|+.... ........|.+.+.+++|+|++.+|++++.|+.|++||+..+..+..+..+..
T Consensus 165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 244 (371)
T d1k8kc_ 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL 244 (371)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCC
T ss_conf 99984015764310012211111111011244047667478987512332100001478605886410121000001466
Q ss_pred CEEEEEEECCCCEEEEEECCCEEEEEECCCE
Q ss_conf 8479999179999999979949999935872
Q 001472 228 GVHAITFHPDGRTLFSGFDDNLKVYSWEPVI 258 (1072)
Q Consensus 228 ~VtsIafSPDGk~LasGsdg~I~Iwdl~s~~ 258 (1072)
+|.+++|++++.++++|.++.+.+|.++...
T Consensus 245 ~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~ 275 (371)
T d1k8kc_ 245 PLLAVTFITESSLVAAGHDCFPVLFTYDSAA 275 (371)
T ss_dssp CEEEEEEEETTEEEEEETTSSCEEEEEETTT
T ss_pred CCEEEEECCCCCEEEEECCCCEEEEEEECCC
T ss_conf 5203654699979999819926787760898
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.7e-35 Score=252.45 Aligned_cols=288 Identities=24% Similarity=0.380 Sum_probs=252.1
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 72489985479986999991189939999978990999987999427995079989479999389999999986991999
Q 001472 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1072)
Q Consensus 5 G~~Ik~L~gHsg~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~I 84 (1072)
.+..+.|.||.+.|+|++|+|++ .+|++|+.||.|+|||+.++..+..+..|...|.+++|+|++.++++++.|+.+.+
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~-~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~ 123 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred EEEEEEECCCCCCEEEEEECCCC-CEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEC
T ss_conf 06527988878988899998999-99999978995556310210257997246533775676012114431013320101
Q ss_pred EECCCC----EEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEE
Q ss_conf 986999----0699980789882799993799899999689809999889990799981689874899996899999999
Q 001472 85 WDLEES----KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSG 160 (1072)
Q Consensus 85 WDl~tg----k~i~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~LvTG 160 (1072)
|+.... .....+.+|........+.. +..+.....+.....|.............+...+....+.+.+.+++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (340)
T d1tbga_ 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp EESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEE
T ss_conf 332222122211100135421101111111-1111111244543200123221111123310157630012442126876
Q ss_pred ECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE--CCCCCCEEEEEEECCC
Q ss_conf 66992999998999168995304886589998599969999978993999988998088740--7998784799991799
Q 001472 161 GFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGST--RPEVTGVHAITFHPDG 238 (1072)
Q Consensus 161 S~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tgk~i~~l--~~h~~~VtsIafSPDG 238 (1072)
+.|+.|++||+++++.+..+..|.+.|.+++|+|++.+|++++.||.|++|++.....+..+ ..+...+.+++|++++
T Consensus 203 ~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 282 (340)
T d1tbga_ 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282 (340)
T ss_dssp ETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSS
T ss_pred ECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 05736999999999488999578898589999799899999969996999752122111111122445745899998999
Q ss_pred CEEEEEEC-CCEEEEEECCCEEECCCCCCCCE-EEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 99999979-94999993587221011268870-4569945999999998699399998
Q 001472 239 RTLFSGFD-DNLKVYSWEPVICHDSVDMGWST-LGDLCINDGKLLGCSFYRNSVGIWV 294 (1072)
Q Consensus 239 k~LasGsd-g~I~Iwdl~s~~~~~~i~~~~s~-is~l~spDGklLasgs~DGsIrIWD 294 (1072)
.+|++|+. +.|++|++....+...+..+... ....+++++.+|++++.||.|+|||
T Consensus 283 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf 9999997979899999999939899848999789999908999999990699799859
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.8e-35 Score=252.42 Aligned_cols=282 Identities=18% Similarity=0.219 Sum_probs=240.7
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCE-----EEEEEECCCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf 279950799894799993899999999869919999869990-----699980789882799993799899999689809
Q 001472 50 ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK-----MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124 (1072)
Q Consensus 50 ~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~IWDl~tgk-----~i~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI 124 (1072)
.+..+ .|...|.+++|+|++++|++|+ ||.|+|||+..+. .......|...|.+++|+|++++|++++.||.|
T Consensus 44 ~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i 121 (337)
T d1gxra_ 44 QINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL 121 (337)
T ss_dssp EEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEE
T ss_pred EEEEC-CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCC
T ss_conf 99987-9999289999989999999997-998899773677633116876404889968999986799889886123321
Q ss_pred EEEECCCC--EEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEE
Q ss_conf 99988999--0799981689874899996899999999669929999989991689953048865899985999699999
Q 001472 125 KIWDIRKK--GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATG 202 (1072)
Q Consensus 125 ~IWDlrsg--k~i~~l~~h~~~VtsIafSPDG~~LvTGS~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTg 202 (1072)
++||+... .....+..|...+.++.|+|++.++++++.++.|.+|++.+++.......|...+.+++|++++..++++
T Consensus 122 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~ 201 (337)
T d1gxra_ 122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG 201 (337)
T ss_dssp EEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111111111111111111111111111111111111111111111111101234443211223
Q ss_pred ECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCEEECCCCCCCCEEEEEEECCCCEE
Q ss_conf 7899399998899808874079987847999917999999997-994999993587221011268870456994599999
Q 001472 203 SADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLL 281 (1072)
Q Consensus 203 S~DGtIrIWDl~tgk~i~~l~~h~~~VtsIafSPDGk~LasGs-dg~I~Iwdl~s~~~~~~i~~~~s~is~l~spDGklL 281 (1072)
+.|+.+++||+.+++.+..+. +...+.+++|+|++.++++++ ++.+++|++..............+....+.+++++|
T Consensus 202 ~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l 280 (337)
T d1gxra_ 202 GLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWF 280 (337)
T ss_dssp ETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEE
T ss_pred CCCCCCCCCCCCCCEEECCCC-CCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEE
T ss_conf 566553211111100000246-6661579997153030000002564211111111100001245654169998999999
Q ss_pred EEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEE
Q ss_conf 999869939999847993244312789999987319999799994222999896167606896
Q 001472 282 GCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRST 344 (1072)
Q Consensus 282 asgs~DGsIrIWDids~~l~~~~~~~~~~~~s~ItsVaFSPDGs~lLa~VlaiG~stG~~r~i 344 (1072)
++++.||.|++|++..+..... ..+...+.+++|+|||+ .++.|..+|.++++
T Consensus 281 ~s~s~Dg~i~iwd~~~~~~~~~-----~~~~~~v~~~~~s~d~~-----~l~t~s~D~~I~vW 333 (337)
T d1gxra_ 281 VSTGKDNLLNAWRTPYGASIFQ-----SKESSSVLSCDISVDDK-----YIVTGSGDKKATVY 333 (337)
T ss_dssp EEEETTSEEEEEETTTCCEEEE-----EECSSCEEEEEECTTSC-----EEEEEETTSCEEEE
T ss_pred EEEECCCEEEEEECCCCCEEEE-----CCCCCCEEEEEEECCCC-----EEEEEECCCEEEEE
T ss_conf 9994899699998999979999-----26999879999927999-----99999089969999
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4e-34 Score=247.91 Aligned_cols=324 Identities=19% Similarity=0.307 Sum_probs=257.4
Q ss_pred EEEEEECCCCCE-EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 489985479986-9999911899399999789909999879994279950799894799993899999999869919999
Q 001472 7 KLQEFVAHSANV-NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1072)
Q Consensus 7 ~Ik~L~gHsg~V-tsIafSPdg~~lLaTGs~DGtI~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~IW 85 (1072)
+...|.||.+.| .|++| ++ ++|++|+.||.|+|||+.+++.+..+.+|..+|.+++|+++ .+|++++.||.|++|
T Consensus 4 ~~~tL~GH~~~vitc~~~--~~-~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw 79 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQF--ED-NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVW 79 (355)
T ss_dssp EEEEEECCSSSCEEEEEE--ET-TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEE
T ss_pred CCEEECCCCCCCEEEEEE--CC-CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCCCC
T ss_conf 758889837886999998--89-99999918990999989999399999789998899998699-999999645244321
Q ss_pred ECCCCEEEEEEECCCCC--EEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEE-----------------------EC
Q ss_conf 86999069998078988--279999379989999968980999988999079998-----------------------16
Q 001472 86 DLEESKMVRTLTGHKSN--CTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-----------------------KG 140 (1072)
Q Consensus 86 Dl~tgk~i~tl~~h~~~--VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~l-----------------------~~ 140 (1072)
++............... .....+.+++.++++++.|+.|++|++......... ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T d1nexb2 80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 159 (355)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEE
T ss_conf 11111111111001111111111111232204554388868999856773001246520001000001123401210110
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE
Q ss_conf 89874899996899999999669929999989991689953048865899985999699999789939999889980887
Q 001472 141 HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIG 220 (1072)
Q Consensus 141 h~~~VtsIafSPDG~~LvTGS~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tgk~i~ 220 (1072)
|...+ ..+.+++.+++++..|+.|++||+.+++.+..+..+...+.++.|++++..+++++.|+.|++|++.++..+.
T Consensus 160 ~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 237 (355)
T d1nexb2 160 HMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 237 (355)
T ss_dssp CSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCCCC--CCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCC
T ss_conf 02221--0000256334421144204443013110001100012332111111210021012456368763012211111
Q ss_pred EECCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 4079987847999917999999997-994999993587221011268870456994599999999869939999847993
Q 001472 221 STRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSH 299 (1072)
Q Consensus 221 ~l~~h~~~VtsIafSPDGk~LasGs-dg~I~Iwdl~s~~~~~~i~~~~s~is~l~spDGklLasgs~DGsIrIWDids~~ 299 (1072)
.+..|...|.++.|++ ++|++++ ++.+++|+....................+.+++.+++++ .||.|++||+..+.
T Consensus 238 ~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~ 314 (355)
T d1nexb2 238 TLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGK 314 (355)
T ss_dssp EECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCC
T ss_pred CCCCCCCCCCCCCCCC--CEEEEEECCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEE-ECCEEEEEECCCCC
T ss_conf 1111111111112321--00333201111111111111100012468822999984999899998-09979999999997
Q ss_pred EEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEEECCC
Q ss_conf 2443127899999873199997999942229998961676068963577
Q 001472 300 VEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDY 348 (1072)
Q Consensus 300 l~~~~~~~~~~~~s~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD~ 348 (1072)
...... .+|...+.+++|+|+ . +++.+..+|...+.+.||
T Consensus 315 ~~~~~~---~~~~~~V~~v~~~~~-~-----~~~~~s~dg~~~l~~~df 354 (355)
T d1nexb2 315 LVHANI---LKDADQIWSVNFKGK-T-----LVAAVEKDGQSFLEILDF 354 (355)
T ss_dssp BCCSCT---TTTCSEEEEEEEETT-E-----EEEEEESSSCEEEEEEEC
T ss_pred EEEEEE---CCCCCCEEEEEECCC-E-----EEEEEECCCCEEEEEEEC
T ss_conf 988884---589998999998399-1-----999998989099999958
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.3e-34 Score=249.57 Aligned_cols=285 Identities=15% Similarity=0.192 Sum_probs=231.6
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE-ECCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 72489985479986999991189939999978990999987999427995-07998947999938999999998699199
Q 001472 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSL-CGLSSPVDSVAFDSAEVLVLAGASTGVIK 83 (1072)
Q Consensus 5 G~~Ik~L~gHsg~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~~~i~sl-~~hs~~ItsLafSPdg~~LatGS~DGsI~ 83 (1072)
|...+.+.||.+.|+|++|+|++ ++|++|+.||.|++||+.+++....+ ..|...|.+++|+|++.+ ++++.|+.++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg-~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~ 79 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLK 79 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEE
T ss_pred CCCCEECCCCCCCCEEEEECCCC-CEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCEE-ECCCCEEEEE
T ss_conf 86136848888782899997999-999999089929999999996889983788774899884033112-1023102688
Q ss_pred EEECCCCEE---EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEE
Q ss_conf 998699906---99980789882799993799899999689809999889990799981689874899996899999999
Q 001472 84 LWDLEESKM---VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSG 160 (1072)
Q Consensus 84 IWDl~tgk~---i~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~LvTG 160 (1072)
+|+...... ......+...+.+++|++++.++++++ ++.+.+|+.. +..... ....+.+++|+|++.+++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~--~~~~~~--~~~~~~~~~~s~~~~~l~~g 154 (299)
T d1nr0a2 80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG--KLTEVP--ISYNSSCVALSNDKQFVAVG 154 (299)
T ss_dssp EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT--EEEEEE--CSSCEEEEEECTTSCEEEEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC--CCCCCC--CCCCCCCCCCCCCCCCCCCC
T ss_conf 731677620111000111134432100112211111222-2222111111--111101--11123322111111111111
Q ss_pred ECCCEEEEEECCCCCEEE-EEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE---EECCCCCCEEEEEEEC
Q ss_conf 669929999989991689-953048865899985999699999789939999889980887---4079987847999917
Q 001472 161 GFDNVVKVWDLTAGKLLH-DFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIG---STRPEVTGVHAITFHP 236 (1072)
Q Consensus 161 S~DGsI~IWDl~tgk~i~-~l~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tgk~i~---~l~~h~~~VtsIafSP 236 (1072)
+.||.|.+||+.+++... ....|...|.+++|+|++.+|++++.|+.|++||+.++.... .+..|...|.+++|+|
T Consensus 155 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 234 (299)
T d1nr0a2 155 GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 234 (299)
T ss_dssp ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111111111111111111111111111111111111111111111111111111111112466
Q ss_pred CCCEEEEEE-CCCEEEEEECCCEEECCC---CCCCCEEEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 999999997-994999993587221011---268870456994599999999869939999847
Q 001472 237 DGRTLFSGF-DDNLKVYSWEPVICHDSV---DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 237 DGk~LasGs-dg~I~Iwdl~s~~~~~~i---~~~~s~is~l~spDGklLasgs~DGsIrIWDid 296 (1072)
++.+|++|+ ++.+++|+++........ ......+..++++++.+|++++.|+.|++||+.
T Consensus 235 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 235 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred CCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCCEEEEEECC
T ss_conf 6451388828997999989999731489834898896899997798999999289979999444
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=9.9e-35 Score=252.08 Aligned_cols=281 Identities=16% Similarity=0.186 Sum_probs=223.2
Q ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEE--E
Q ss_conf 98947999938999999998699199998699906999807898827999937998999996898099998899907--9
Q 001472 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC--I 135 (1072)
Q Consensus 58 s~~ItsLafSPdg~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~--i 135 (1072)
.+....++++|+|..|+.+. ++.+.+|++.+......+.+|...|++++|+|++++|++|+.||.|++||+..+.. .
T Consensus 17 r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~ 95 (311)
T d1nr0a1 17 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 95 (311)
T ss_dssp TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred CCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCCCC
T ss_conf 88759999969989999996-99999999999966179747888889999948999672255673674663101111000
Q ss_pred EEEECCCCCEEEEEECCCCCEEEEEEC--CCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCC-EEEEEECCCEEEEEE
Q ss_conf 998168987489999689999999966--99299999899916899530488658999859996-999997899399998
Q 001472 136 HTYKGHTRGINTIRFTPDGRWVVSGGF--DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEF-LLATGSADRTVKFWD 212 (1072)
Q Consensus 136 ~~l~~h~~~VtsIafSPDG~~LvTGS~--DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~-lLaTgS~DGtIrIWD 212 (1072)
..+..|..+|.+++|+|+++++++++. +..+.+|++.+++....+.+|...|.+++|+|++. .|++|+.||.|++||
T Consensus 96 ~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d 175 (311)
T d1nr0a1 96 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE 175 (311)
T ss_dssp EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 01343357543323331110001111221111111111111111111111111111111211101200011221111111
Q ss_pred CCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCEEECCCCC--------CCCEEEEEEECCCCEEEE
Q ss_conf 899808874079987847999917999999997-99499999358722101126--------887045699459999999
Q 001472 213 LETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDM--------GWSTLGDLCINDGKLLGC 283 (1072)
Q Consensus 213 l~tgk~i~~l~~h~~~VtsIafSPDGk~LasGs-dg~I~Iwdl~s~~~~~~i~~--------~~s~is~l~spDGklLas 283 (1072)
+++++....+..|...|.++.|+|+++++++++ ++.+.+|++........+.. ...+....+++++++|++
T Consensus 176 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t 255 (311)
T d1nr0a1 176 GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 255 (311)
T ss_dssp TTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 11111111111111111112347642212111111111000124464112221111111002465321024788999999
Q ss_pred EECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEEECC
Q ss_conf 9869939999847993244312789999987319999799994222999896167606896357
Q 001472 284 SFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPD 347 (1072)
Q Consensus 284 gs~DGsIrIWDids~~l~~~~~~~~~~~~s~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD 347 (1072)
++.||.|+|||+..+......... ......+.++.|+ ++ .++.+...|.++++-||
T Consensus 256 gs~Dg~v~iwd~~t~~~~~~l~~~-~~~~~~~~~~~~~--~~-----~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 256 ASADKTIKIWNVATLKVEKTIPVG-TRIEDQQLGIIWT--KQ-----ALVSISANGFINFVNPE 311 (311)
T ss_dssp EETTSEEEEEETTTTEEEEEEECC-SSGGGCEEEEEEC--SS-----CEEEEETTCCEEEEETT
T ss_pred EECCCEEEEEECCCCCEEEEEECC-CCCCCEEEEEEEC--CC-----EEEEEECCCEEEEEECC
T ss_conf 937996999999999699999799-9863329999951--99-----99999899979999588
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.9e-33 Score=241.04 Aligned_cols=305 Identities=21% Similarity=0.308 Sum_probs=245.8
Q ss_pred EEEEEECCCEEEEEECCCCCE----EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEE--------
Q ss_conf 999997899099998799942----79950799894799993899999999869919999869990699980--------
Q 001472 30 FLITGGDDQKVNLWAIGKPTA----LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT-------- 97 (1072)
Q Consensus 30 lLaTGs~DGtI~IWDi~t~~~----i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~IWDl~tgk~i~tl~-------- 97 (1072)
..+.+..++...+|+...... +....+|...|++++|+|+|++|++|+ |+.|++|++.+++.+..+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~ 108 (388)
T d1erja_ 30 DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD 108 (388)
T ss_dssp TTSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred CCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCC
T ss_conf 3224688970898688777620541076079999689999999999999994-994899981364057663166544324
Q ss_pred ----------CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf ----------7898827999937998999996898099998899907999816898748999968999999996699299
Q 001472 98 ----------GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVK 167 (1072)
Q Consensus 98 ----------~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~LvTGS~DGsI~ 167 (1072)
.|...|.+++|+|++++|++|+.||.|++|+...++.+..+.+|...|.++.|++++..+++++.++.++
T Consensus 109 ~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~ 188 (388)
T d1erja_ 109 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 188 (388)
T ss_dssp ----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 43211101467789889999889998012134441111211111111111111111111101111111111222101565
Q ss_pred EEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC-------CCCCCEEEEEEECCCCE
Q ss_conf 99989991689953048865899985999699999789939999889980887407-------99878479999179999
Q 001472 168 VWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR-------PEVTGVHAITFHPDGRT 240 (1072)
Q Consensus 168 IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tgk~i~~l~-------~h~~~VtsIafSPDGk~ 240 (1072)
+||..+.........+...+....+.+++.+|++++.||.|++|+..++.....+. .|...|.+++|+|++.+
T Consensus 189 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 268 (388)
T d1erja_ 189 IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 268 (388)
T ss_dssp EEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCE
T ss_conf 41011111100001245442112368878758997389819996345573000102443334577898789999799999
Q ss_pred EEEEE-CCCEEEEEECCCEEECC-------------CCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECC
Q ss_conf 99997-99499999358722101-------------12688704569945999999998699399998479932443127
Q 001472 241 LFSGF-DDNLKVYSWEPVICHDS-------------VDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVG 306 (1072)
Q Consensus 241 LasGs-dg~I~Iwdl~s~~~~~~-------------i~~~~s~is~l~spDGklLasgs~DGsIrIWDids~~l~~~~~~ 306 (1072)
|++++ ++.+++|++........ ......+....+.+++++|++|+.||.|++||+..+......
T Consensus 269 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l-- 346 (388)
T d1erja_ 269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML-- 346 (388)
T ss_dssp EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE--
T ss_pred EEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE--
T ss_conf 999978992898751577643210134442001101245532789998899999999969897999999999699999--
Q ss_pred CCCCCCCCEEEEEE------CCCCCCCCEEEEEEECCCCCEEEE
Q ss_conf 89999987319999------799994222999896167606896
Q 001472 307 APEPDQSICTEVKF------NPPGSHSLEKVGIIGRSTSGFRST 344 (1072)
Q Consensus 307 ~~~~~~s~ItsVaF------SPDGs~lLa~VlaiG~stG~~r~i 344 (1072)
.+|.+.+.+++| +|||. +++.|..+|.++++
T Consensus 347 --~~H~~~V~~~~~~~~~~~spd~~-----~l~s~s~Dg~I~iW 383 (388)
T d1erja_ 347 --QGHRNSVISVAVANGSSLGPEYN-----VFATGSGDCKARIW 383 (388)
T ss_dssp --ECCSSCEEEEEECSSCTTCTTCE-----EEEEEETTSEEEEE
T ss_pred --ECCCCCEEEEEEECCCCCCCCCC-----EEEEEECCCEEEEE
T ss_conf --68899789999846742589999-----99999189979997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.6e-33 Score=243.71 Aligned_cols=292 Identities=24% Similarity=0.436 Sum_probs=255.2
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 99879994279950799894799993899999999869919999869990699980789882799993799899999689
Q 001472 42 LWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD 121 (1072)
Q Consensus 42 IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~D 121 (1072)
.|.. .+.....+.+|..+|++++|+|++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|++++.+++++..+
T Consensus 2 ~w~p-~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~ 80 (317)
T d1vyhc1 2 EWIP-RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD 80 (317)
T ss_dssp CCCC-CSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCC-CCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCC
T ss_conf 3689-898448985888876899993898999999389929999899997999995788867777630111101111111
Q ss_pred CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEE
Q ss_conf 80999988999079998168987489999689999999966992999998999168995304886589998599969999
Q 001472 122 TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLAT 201 (1072)
Q Consensus 122 GsI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~LvTGS~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaT 201 (1072)
+.+.+|+.........+..|...+.++.|++++.++++++.|+.+.+||+.+++....+..|...+.+++|++++.+|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 160 (317)
T d1vyhc1 81 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 160 (317)
T ss_dssp SCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEECCCCCCEEEE
T ss_conf 11011100111111110000000000001699855776526752357511443034687167776300001667999999
Q ss_pred EECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCC--------------------CEEEEEE-CCCEEEEEECCCEEE
Q ss_conf 9789939999889980887407998784799991799--------------------9999997-994999993587221
Q 001472 202 GSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDG--------------------RTLFSGF-DDNLKVYSWEPVICH 260 (1072)
Q Consensus 202 gS~DGtIrIWDl~tgk~i~~l~~h~~~VtsIafSPDG--------------------k~LasGs-dg~I~Iwdl~s~~~~ 260 (1072)
++.|+.|++|++.+......+..+...+.++.|++++ .++++++ ++.+++|+.....+.
T Consensus 161 ~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 240 (317)
T d1vyhc1 161 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 240 (317)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred EECCCEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCEE
T ss_conf 92798299975125403478824778733799863256411103456303430258861475169978999888999688
Q ss_pred CCCCCCCCE-EEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCC
Q ss_conf 011268870-4569945999999998699399998479932443127899999873199997999942229998961676
Q 001472 261 DSVDMGWST-LGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTS 339 (1072)
Q Consensus 261 ~~i~~~~s~-is~l~spDGklLasgs~DGsIrIWDids~~l~~~~~~~~~~~~s~ItsVaFSPDGs~lLa~VlaiG~stG 339 (1072)
..+..+... ....+.+++++|++++.||.|++||+..+...... .+|...|++++|+|+|. .++.|..+|
T Consensus 241 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~h~~~V~~~~~s~~~~-----~l~s~s~Dg 311 (317)
T d1vyhc1 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL----NAHEHFVTSLDFHKTAP-----YVVTGSVDQ 311 (317)
T ss_dssp EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE----ECCSSCEEEEEECSSSS-----CEEEEETTS
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE----CCCCCCEEEEEECCCCC-----EEEEEECCC
T ss_conf 999688998799998799999999979894999999999199999----28999889999949999-----999992899
Q ss_pred CEEE
Q ss_conf 0689
Q 001472 340 GFRS 343 (1072)
Q Consensus 340 ~~r~ 343 (1072)
.+++
T Consensus 312 ~i~i 315 (317)
T d1vyhc1 312 TVKV 315 (317)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 4998
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-31 Score=230.37 Aligned_cols=329 Identities=21% Similarity=0.371 Sum_probs=259.8
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 67248998547998699999118993999997899099998799942799507998947999938999999998699199
Q 001472 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIK 83 (1072)
Q Consensus 4 tG~~Ik~L~gHsg~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~ 83 (1072)
..+..+.|+||.+.|.+ +++++| ++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+++ +|++++.|+.++
T Consensus 5 ~~~~~~~l~GH~~~V~s-~~~~~g-~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~ 80 (342)
T d2ovrb2 5 ELKSPKVLKGHDDHVIT-CLQFCG-NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLK 80 (342)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEET-TEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEE
T ss_pred CCCCCEEECCCCCCEEE-EEEECC-CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC--CCCCCEECCCCC
T ss_conf 88758898886875099-999789-99999918990999989999799999488999899994798--632100000111
Q ss_pred EEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 99869990699980789882799993799899999689809999889990799981689874899996899999999669
Q 001472 84 LWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163 (1072)
Q Consensus 84 IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~LvTGS~D 163 (1072)
+|+............+...+....+. ...+..+..|+.+.+|+...+.....+........ .+.....+++.++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d 156 (342)
T d2ovrb2 81 VWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYDGRRVVSGAYD 156 (342)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE--EEEECSSCEEEEETT
T ss_pred CCCCCCCCCEECCCCCCEEEEEEECC--CCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCE--EECCCCCEEEEECCC
T ss_conf 11111000000012333047652024--65221234440378740355630011100111100--000133302433589
Q ss_pred CEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEE
Q ss_conf 92999998999168995304886589998599969999978993999988998088740799878479999179999999
Q 001472 164 NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243 (1072)
Q Consensus 164 GsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tgk~i~~l~~h~~~VtsIafSPDGk~Las 243 (1072)
+.|++||......+..+..|...+..+.+ ++.++++++.||.|++||+..++.+..+..|...+.++.+++ .+|++
T Consensus 157 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s 232 (342)
T d2ovrb2 157 FMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVS 232 (342)
T ss_dssp SCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEE
T ss_pred CEEEEEECCCCEEEEEECCCCCCCCCCCC--CCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEECCC--CEEEE
T ss_conf 86999525234366787275444210068--999999995899399952556536567416653205770689--99999
Q ss_pred EE-CCCEEEEEECCCEEECCCCCCCC--EEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EEECCCCCCCCCCEEEEE
Q ss_conf 97-99499999358722101126887--045699459999999986993999984799324-431278999998731999
Q 001472 244 GF-DDNLKVYSWEPVICHDSVDMGWS--TLGDLCINDGKLLGCSFYRNSVGIWVADVSHVE-PYGVGAPEPDQSICTEVK 319 (1072)
Q Consensus 244 Gs-dg~I~Iwdl~s~~~~~~i~~~~s--~is~l~spDGklLasgs~DGsIrIWDids~~l~-~~~~~~~~~~~s~ItsVa 319 (1072)
++ ++.+++|+.........+..... .....+..++.++++++.||.|++||+..+... .+......++...+.+++
T Consensus 233 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~ 312 (342)
T d2ovrb2 233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR 312 (342)
T ss_dssp EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE
T ss_pred ECCCCEEEEEECCCCCCCCCCCCCCEEEECEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEE
T ss_conf 74898899986554422111221000110100001379844999089989999999997989986234789889789999
Q ss_pred ECCCCCCCCEEEEEEECCCCC--EEEEECCCC
Q ss_conf 979999422299989616760--689635776
Q 001472 320 FNPPGSHSLEKVGIIGRSTSG--FRSTSPDYE 349 (1072)
Q Consensus 320 FSPDGs~lLa~VlaiG~stG~--~r~ivpD~e 349 (1072)
|+|+|. +++.|...|. .+..+.|++
T Consensus 313 ~s~~~~-----~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 313 ASNTKL-----VCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp ECSSEE-----EEEEECSSSSSCCEEEEEECC
T ss_pred ECCCCC-----EEEEEECCCCCEEEEEEEECC
T ss_conf 879998-----999996899970489999389
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.7e-31 Score=226.07 Aligned_cols=287 Identities=17% Similarity=0.291 Sum_probs=243.5
Q ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 94279950799894799993899999999869919999869990699980789882799993799899999689809999
Q 001472 48 PTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIW 127 (1072)
Q Consensus 48 ~~~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI~IW 127 (1072)
.+...++.+|...|++++|+|++.+|++|+.||.|++||+.+++.+..+..|...|.+++|+|++.++++++.|+.+.+|
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred EEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEECC
T ss_conf 06527988878988899998999999999789955563102102579972465337756760121144310133201013
Q ss_pred ECCCC----EEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEE
Q ss_conf 88999----07999816898748999968999999996699299999899916899530488658999859996999997
Q 001472 128 DIRKK----GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS 203 (1072)
Q Consensus 128 Dlrsg----k~i~~l~~h~~~VtsIafSPDG~~LvTGS~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTgS 203 (1072)
+.... .....+.+|........+.. +..+.....+.....+.............+...+....+.+.+.++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEE
T ss_conf 32222122211100135421101111111-11111112445432001232211111233101576300124421268760
Q ss_pred CCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCEEECCCC---CCCCEEEEEEECCCC
Q ss_conf 899399998899808874079987847999917999999997-9949999935872210112---688704569945999
Q 001472 204 ADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVD---MGWSTLGDLCINDGK 279 (1072)
Q Consensus 204 ~DGtIrIWDl~tgk~i~~l~~h~~~VtsIafSPDGk~LasGs-dg~I~Iwdl~s~~~~~~i~---~~~s~is~l~spDGk 279 (1072)
.|+.|++||+.+++.+..+..|...|.+++|+|++.+|++++ ++.+++|++........+. .........+.++++
T Consensus 204 ~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 283 (340)
T d1tbga_ 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283 (340)
T ss_dssp TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSC
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf 57369999999994889995788985899997998999999699969997521221111111224457458999989999
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEE
Q ss_conf 99999869939999847993244312789999987319999799994222999896167606896
Q 001472 280 LLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRST 344 (1072)
Q Consensus 280 lLasgs~DGsIrIWDids~~l~~~~~~~~~~~~s~ItsVaFSPDGs~lLa~VlaiG~stG~~r~i 344 (1072)
+|++|+.||.|++||+..+...... .+|...|.+++|+|||. .++.|..+|.++++
T Consensus 284 ~l~~g~~dg~i~iwd~~~~~~~~~~----~~H~~~V~~l~~s~d~~-----~l~s~s~Dg~v~iW 339 (340)
T d1tbga_ 284 LLLAGYDDFNCNVWDALKADRAGVL----AGHDNRVSCLGVTDDGM-----AVATGSWDSFLKIW 339 (340)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEE----CCCSSCEEEEEECTTSS-----CEEEEETTSCEEEE
T ss_pred EEEEEECCCEEEEEECCCCCEEEEE----CCCCCCEEEEEEECCCC-----EEEEECCCCEEEEE
T ss_conf 9999979798999999999398998----48999789999908999-----99999069979985
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.3e-31 Score=227.71 Aligned_cols=239 Identities=17% Similarity=0.247 Sum_probs=183.9
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCE--EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEE
Q ss_conf 99894799993899999999869919999869990--6999807898827999937998999996898099998899907
Q 001472 57 LSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK--MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC 134 (1072)
Q Consensus 57 hs~~ItsLafSPdg~~LatGS~DGsI~IWDl~tgk--~i~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~ 134 (1072)
...+|+|++|+|++.+|++++.+|.|++|++.+++ .+..+.+|...|.+++|+|++++|++++.|+.|++||+..+..
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCC
T ss_conf 99883899998999999999488989999888997899999558899888999979999999997999399986203321
Q ss_pred E--EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE----EEEEECCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf 9--998168987489999689999999966992999998999168----9953048865899985999699999789939
Q 001472 135 I--HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLL----HDFKFHEGHIRSIDFHPLEFLLATGSADRTV 208 (1072)
Q Consensus 135 i--~~l~~h~~~VtsIafSPDG~~LvTGS~DGsI~IWDl~tgk~i----~~l~~h~g~ItsLafSPdg~lLaTgS~DGtI 208 (1072)
. ..+..|...+.+++|+|++++|++++.|+.+++|++...... .....|...|.+++|+|++.+|++++.|+.+
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v 165 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 165 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEE
T ss_conf 10012232211000111111121100000257630254420334331110010111222111111111110001347679
Q ss_pred EEEECCCC------------------CEEEEECCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCEEECCCCCCCCE
Q ss_conf 99988998------------------08874079987847999917999999997-994999993587221011268870
Q 001472 209 KFWDLETF------------------ELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWST 269 (1072)
Q Consensus 209 rIWDl~tg------------------k~i~~l~~h~~~VtsIafSPDGk~LasGs-dg~I~Iwdl~s~~~~~~i~~~~s~ 269 (1072)
++|+.... ..+.....|...+.+++|+|+|.+|++++ ++.+.+|++........+..+..+
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 245 (371)
T d1k8kc_ 166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245 (371)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCC
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCC
T ss_conf 99840157643100122111111110112440476674789875123321000014786058864101210000014665
Q ss_pred -EEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf -456994599999999869939999847
Q 001472 270 -LGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 270 -is~l~spDGklLasgs~DGsIrIWDid 296 (1072)
....|.+++++|++| .|+.+.+|..+
T Consensus 246 v~s~~fs~d~~~la~g-~d~~~~~~~~~ 272 (371)
T d1k8kc_ 246 LLAVTFITESSLVAAG-HDCFPVLFTYD 272 (371)
T ss_dssp EEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred CEEEEECCCCCEEEEE-CCCCEEEEEEE
T ss_conf 2036546999799998-19926787760
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.4e-31 Score=224.90 Aligned_cols=279 Identities=14% Similarity=0.158 Sum_probs=220.9
Q ss_pred CCEEEEEEECCCCCEEEEEECCC-EEEEEECCCC--CEEEEEECC-CCCEEEEEECC--CCCEEEEEECCCEEEEEECCC
Q ss_conf 98699999118993999997899-0999987999--427995079-98947999938--999999998699199998699
Q 001472 16 ANVNCISIGKKACRFLITGGDDQ-KVNLWAIGKP--TALMSLCGL-SSPVDSVAFDS--AEVLVLAGASTGVIKLWDLEE 89 (1072)
Q Consensus 16 g~VtsIafSPdg~~lLaTGs~DG-tI~IWDi~t~--~~i~sl~~h-s~~ItsLafSP--dg~~LatGS~DGsI~IWDl~t 89 (1072)
+.+.+++|+|++ ..|+.++.+. .|+.|+.... .....+.+| ...|++++|+| ++.+|++|+.||.|++||+..
T Consensus 18 ~~~t~l~~~~~~-~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~ 96 (325)
T d1pgua1 18 NFTTHLSYDPTT-NAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF 96 (325)
T ss_dssp TCCCCCEEETTT-TEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred CCEEEEEECCCC-CEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECC
T ss_conf 984799998997-9999996998799997688887650289907899988999981179997999994899779854058
Q ss_pred CE--------EEEEEECCCCCEEEEEECCCCCEEEEEEC--CCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCE-EE
Q ss_conf 90--------69998078988279999379989999968--980999988999079998168987489999689999-99
Q 001472 90 SK--------MVRTLTGHKSNCTAVEFHPFGEFFASGCM--DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW-VV 158 (1072)
Q Consensus 90 gk--------~i~tl~~h~~~VtsIafSPdgk~LaSgs~--DGsI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~-Lv 158 (1072)
+. ....+..|...|.+++|+++++++++++. ++.+.+|+..++..+..+.+|...+.+++|+|++.+ ++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 176 (325)
T d1pgua1 97 DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSM 176 (325)
T ss_dssp EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEE
T ss_pred CCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEE
T ss_conf 86215651002541136567377999899988220100124404788850233110012001234321111234320688
Q ss_pred EEECCCEEEEEECCCCCEEEEEE---ECCCCEEEEEECCC-CCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEE
Q ss_conf 99669929999989991689953---04886589998599-969999978993999988998088740799878479999
Q 001472 159 SGGFDNVVKVWDLTAGKLLHDFK---FHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITF 234 (1072)
Q Consensus 159 TGS~DGsI~IWDl~tgk~i~~l~---~h~g~ItsLafSPd-g~lLaTgS~DGtIrIWDl~tgk~i~~l~~h~~~VtsIaf 234 (1072)
+++.|+.+++||....+....+. .|...|.+++|+|+ +.++++++.|+.|++||+.+++.+..+..|...+..+.|
T Consensus 177 ~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~ 256 (325)
T d1pgua1 177 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF 256 (325)
T ss_dssp EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEE
T ss_pred EEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEE
T ss_conf 86211122111122110000000015777752776303453100001123321013430012221111111111111000
Q ss_pred E---CCCCEEEEEE-CCCEEEEEECCCEEECCCCCCCCEE---E-EEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 1---7999999997-9949999935872210112688704---5-699459999999986993999984
Q 001472 235 H---PDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWSTL---G-DLCINDGKLLGCSFYRNSVGIWVA 295 (1072)
Q Consensus 235 S---PDGk~LasGs-dg~I~Iwdl~s~~~~~~i~~~~s~i---s-~l~spDGklLasgs~DGsIrIWDi 295 (1072)
+ ++|++|++++ |+.+++|+++...+...+..+.... . .+.++.+.+|++++.||.|++||+
T Consensus 257 s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf 000368999999958993999999999788999954874067699999889999999979999999979
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3e-29 Score=214.20 Aligned_cols=286 Identities=19% Similarity=0.357 Sum_probs=183.1
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC--EEEEEECCCCCEEEEEECCC
Q ss_conf 6672489985479986999991189939999978990999987999427995079989--47999938999999998699
Q 001472 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP--VDSVAFDSAEVLVLAGASTG 80 (1072)
Q Consensus 3 ktG~~Ik~L~gHsg~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~~~i~sl~~hs~~--ItsLafSPdg~~LatGS~DG 80 (1072)
.+++.++.|.+|.+.|.+++|++++ +|++|+.||.|++|+................ .....+.+++.++++++.|+
T Consensus 41 ~~~~~~~~l~~H~~~V~~l~~s~~~--~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 118 (355)
T d1nexb2 41 INKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118 (355)
T ss_dssp TTTEEEEEEECCSSCEEEEEEETTT--EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTS
T ss_pred CCCCEEEEEECCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 9993999997899988999986999--99999645244321111111111110011111111111112322045543888
Q ss_pred EEEEEECCCCEEEEE-----------------------EECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEE
Q ss_conf 199998699906999-----------------------807898827999937998999996898099998899907999
Q 001472 81 VIKLWDLEESKMVRT-----------------------LTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHT 137 (1072)
Q Consensus 81 sI~IWDl~tgk~i~t-----------------------l~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~ 137 (1072)
.|++|++........ ...|...+. .+.+++++++.+..|+.|++||+.+++.+..
T Consensus 119 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~ 196 (355)
T d1nexb2 119 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI 196 (355)
T ss_dssp EEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEECCCCCC--CCCCCCCEEEEECCCCEEEEEECCCCCCEEE
T ss_conf 68999856773001246520001000001123401210110022210--0002563344211442044430131100011
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 81689874899996899999999669929999989991689953048865899985999699999789939999889980
Q 001472 138 YKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE 217 (1072)
Q Consensus 138 l~~h~~~VtsIafSPDG~~LvTGS~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tgk 217 (1072)
...+...+.++.|++++.++++++.|+.|++||..++..+..+.+|...|.++.|+ +.+|++++.||.|++||+.+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~ 274 (355)
T d1nexb2 197 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS 274 (355)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC
T ss_pred EECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEECCCCCCCCCCCCCC
T ss_conf 00012332111111210021012456368763012211111111111111111232--1003332011111111111111
Q ss_pred EEEEECCCCCCEEE-EEEECCCCEEEEEECCCEEEEEECCCEEECC-CCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 88740799878479-9991799999999799499999358722101-126887045699459999999986993999984
Q 001472 218 LIGSTRPEVTGVHA-ITFHPDGRTLFSGFDDNLKVYSWEPVICHDS-VDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1072)
Q Consensus 218 ~i~~l~~h~~~Vts-IafSPDGk~LasGsdg~I~Iwdl~s~~~~~~-i~~~~s~is~l~spDGklLasgs~DGsIrIWDi 295 (1072)
..... |...+.. ..+++++.++++|+++.+++|+++.+++... +..+...+..+.+....++++++.||.+.||.+
T Consensus 275 ~~~~~--~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 275 RKFSY--HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp EEEEE--ECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTEEEEEEESSSCEEEEEE
T ss_pred EECCC--CCCCCEEEEEECCCCCEEEEEECCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCEEEEEEECCCCEEEEEE
T ss_conf 00012--4688229999849998999980997999999999798888458999899999839919999989890999999
Q ss_pred C
Q ss_conf 7
Q 001472 296 D 296 (1072)
Q Consensus 296 d 296 (1072)
+
T Consensus 353 d 353 (355)
T d1nexb2 353 D 353 (355)
T ss_dssp E
T ss_pred E
T ss_conf 5
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.5e-28 Score=209.29 Aligned_cols=285 Identities=14% Similarity=0.131 Sum_probs=215.3
Q ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEE-CCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 94279950799894799993899999999869919999869990699980-78988279999379989999968980999
Q 001472 48 PTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT-GHKSNCTAVEFHPFGEFFASGCMDTNLKI 126 (1072)
Q Consensus 48 ~~~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~IWDl~tgk~i~tl~-~h~~~VtsIafSPdgk~LaSgs~DGsI~I 126 (1072)
|.....+.+|..+|.+++|+|++++|++|+.||.|++||+.+++....+. .|...|.+++|+|++.+ ++++.|+.+++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~ 80 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKV 80 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEE
T ss_pred CCCCEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCEE-ECCCCEEEEEE
T ss_conf 86136848888782899997999999999089929999999996889983788774899884033112-10231026887
Q ss_pred EECCCCEE---EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEE
Q ss_conf 98899907---999816898748999968999999996699299999899916899530488658999859996999997
Q 001472 127 WDIRKKGC---IHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS 203 (1072)
Q Consensus 127 WDlrsgk~---i~~l~~h~~~VtsIafSPDG~~LvTGS~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTgS 203 (1072)
|+...... ......+...+.+++|++++.+++.++ ++.+.+|+.. +... .. ....+.+++|+|++.+|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~--~~~~-~~-~~~~~~~~~~s~~~~~l~~g~ 155 (299)
T d1nr0a2 81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG--KLTE-VP-ISYNSSCVALSNDKQFVAVGG 155 (299)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT--EEEE-EE-CSSCEEEEEECTTSCEEEEEE
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC--CCCC-CC-CCCCCCCCCCCCCCCCCCCCC
T ss_conf 31677620111000111134432100112211111222-2222111111--1111-01-111233221111111111111
Q ss_pred CCCEEEEEECCCCCEEE-EECCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCEEECC---CCCCC-CEEEEEEECC
Q ss_conf 89939999889980887-4079987847999917999999997-99499999358722101---12688-7045699459
Q 001472 204 ADRTVKFWDLETFELIG-STRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDS---VDMGW-STLGDLCIND 277 (1072)
Q Consensus 204 ~DGtIrIWDl~tgk~i~-~l~~h~~~VtsIafSPDGk~LasGs-dg~I~Iwdl~s~~~~~~---i~~~~-s~is~l~spD 277 (1072)
.||.|++||+.+..... ....|...|.+++|+|++.+|++++ ++.+++|++........ +..+. .+....+.++
T Consensus 156 ~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 235 (299)
T d1nr0a2 156 QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD 235 (299)
T ss_dssp TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111111111111111111111111111111111111111111111111111111111124666
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEEE
Q ss_conf 99999998699399998479932443127899999873199997999942229998961676068963
Q 001472 278 GKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTS 345 (1072)
Q Consensus 278 GklLasgs~DGsIrIWDids~~l~~~~~~~~~~~~s~ItsVaFSPDGs~lLa~VlaiG~stG~~r~iv 345 (1072)
+.+|++++.||.|++|++............ ..+...+.++.|. ++. .++.+..+|.++++-
T Consensus 236 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~-~~~-----~l~s~s~D~~i~iWd 296 (299)
T d1nr0a2 236 NVRLATGSLDNSVIVWNMNKPSDHPIIIKG-AHAMSSVNSVIWL-NET-----TIVSAGQDSNIKFWN 296 (299)
T ss_dssp SSEEEEEETTSCEEEEETTCTTSCCEEETT-SSTTSCEEEEEEE-ETT-----EEEEEETTSCEEEEE
T ss_pred CCCEEEECCCCEEEEEECCCCCCCEEEEEC-CCCCCCEEEEEEC-CCC-----EEEEEECCCEEEEEE
T ss_conf 451388828997999989999731489834-8988968999977-989-----999992899799994
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.4e-29 Score=214.81 Aligned_cols=280 Identities=16% Similarity=0.173 Sum_probs=198.2
Q ss_pred CCEEEEEECCCCCEEEEEECCC-EEEEEECCCC--EEEEEEECCC-CCEEEEEECC--CCCEEEEEECCCEEEEEECCCC
Q ss_conf 8947999938999999998699-1999986999--0699980789-8827999937--9989999968980999988999
Q 001472 59 SPVDSVAFDSAEVLVLAGASTG-VIKLWDLEES--KMVRTLTGHK-SNCTAVEFHP--FGEFFASGCMDTNLKIWDIRKK 132 (1072)
Q Consensus 59 ~~ItsLafSPdg~~LatGS~DG-sI~IWDl~tg--k~i~tl~~h~-~~VtsIafSP--dgk~LaSgs~DGsI~IWDlrsg 132 (1072)
..+.+++|+|++..|+.++.+. .|+.|+.... .....+.+|. ..|++++|+| ++.+|++|+.||.|++||+..+
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~ 97 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCC
T ss_conf 98479999899799999969987999976888876502899078999889999811799979999948997798540588
Q ss_pred EE--------EEEEECCCCCEEEEEECCCCCEEEEEEC--CCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCE-EEE
Q ss_conf 07--------9998168987489999689999999966--992999998999168995304886589998599969-999
Q 001472 133 GC--------IHTYKGHTRGINTIRFTPDGRWVVSGGF--DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFL-LAT 201 (1072)
Q Consensus 133 k~--------i~~l~~h~~~VtsIafSPDG~~LvTGS~--DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~l-LaT 201 (1072)
.. ...+..|..+|.+++|++++.++++++. ++.+.+|+..+++.+..+..|...+.+++|+|++.. +++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 177 (325)
T d1pgua1 98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT 177 (325)
T ss_dssp GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred CCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEE
T ss_conf 62156510025411365673779998999882201001244047888502331100120012343211112343206888
Q ss_pred EECCCEEEEEECCCCCEEEEE---CCCCCCEEEEEEECC-CCEEEEEE-CCCEEEEEECCCEEECCCCCCCCE----EEE
Q ss_conf 978993999988998088740---799878479999179-99999997-994999993587221011268870----456
Q 001472 202 GSADRTVKFWDLETFELIGST---RPEVTGVHAITFHPD-GRTLFSGF-DDNLKVYSWEPVICHDSVDMGWST----LGD 272 (1072)
Q Consensus 202 gS~DGtIrIWDl~tgk~i~~l---~~h~~~VtsIafSPD-Gk~LasGs-dg~I~Iwdl~s~~~~~~i~~~~s~----is~ 272 (1072)
++.|+.+++|+...++..... ..+...|.+++|+|+ +.++++++ ++.+++|+.+.......+..+... ...
T Consensus 178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s 257 (325)
T d1pgua1 178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257 (325)
T ss_dssp EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred EECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEE
T ss_conf 62111221111221100000000157777527763034531000011233210134300122211111111111110000
Q ss_pred EEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEE
Q ss_conf 994599999999869939999847993244312789999987319999799994222999896167606896
Q 001472 273 LCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRST 344 (1072)
Q Consensus 273 l~spDGklLasgs~DGsIrIWDids~~l~~~~~~~~~~~~s~ItsVaFSPDGs~lLa~VlaiG~stG~~r~i 344 (1072)
..+++|++|++++.|+.|+|||+..+........ ..+...+..++|.+.++. .++.+..+|.++++
T Consensus 258 ~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~l~s~s~dg~i~vw 323 (325)
T d1pgua1 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL--DKQQLGNQQVGVVATGNG----RIISLSLDGTLNFY 323 (325)
T ss_dssp EEESSSSEEEEEETTSEEEEEETTTTEEEEEEEC--CTTCGGGCEEEEEEEETT----EEEEEETTSCEEEE
T ss_pred EECCCCCEEEEEECCCEEEEEECCCCCEEEEEEE--CCCCCCCEEEEEEECCCC----EEEEEECCCEEEEE
T ss_conf 0036899999995899399999999978899995--487406769999988999----99999799999999
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-27 Score=201.34 Aligned_cols=275 Identities=20% Similarity=0.405 Sum_probs=220.9
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 24899854799869999911899399999789909999879994279950799894799993899999999869919999
Q 001472 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1072)
Q Consensus 6 ~~Ik~L~gHsg~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~IW 85 (1072)
+.++.+..|...|+|++| ++ ++|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++++|++++.||.|.+|
T Consensus 6 ~~i~~~~~~~~~V~c~~~--d~-~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 6 QRIHCRSETSKGVYCLQY--DD-QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 80 (293)
T ss_dssp CCEECCCSSCCCEEEEEC--CS-SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred EEEECCCCCCCCEEEEEE--CC-CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEC--CCCEEECCCCCCCCCCC
T ss_conf 898432899998899987--69-99999928993999999999199999267787763423--63002100111011000
Q ss_pred ECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCE---EEEEEECCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 869990699980789882799993799899999689809999889990---79998168987489999689999999966
Q 001472 86 DLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG---CIHTYKGHTRGINTIRFTPDGRWVVSGGF 162 (1072)
Q Consensus 86 Dl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk---~i~~l~~h~~~VtsIafSPDG~~LvTGS~ 162 (1072)
++..+........+.... ..+.+....++++..++.+.+|+..... ....+..|...+.++.+.+ ..+++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~ 156 (293)
T d1p22a2 81 DVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASG 156 (293)
T ss_dssp ESSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEET
T ss_pred CCCCCCCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECC--CCCCCCCC
T ss_conf 002464100111111000--01111110000013566306861344544421210001135431100000--22011069
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEE
Q ss_conf 99299999899916899530488658999859996999997899399998899808874079987847999917999999
Q 001472 163 DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242 (1072)
Q Consensus 163 DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tgk~i~~l~~h~~~VtsIafSPDGk~La 242 (1072)
|+.|++||..+++.+..+.++...+..+.++ +..+++++.||.|++||+.+...+.....+...+.. +.+++.+|+
T Consensus 157 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~ 232 (293)
T d1p22a2 157 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIV 232 (293)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEE
T ss_pred CCCEEEECCCCCCEEEEECCCCCCCCCCCCC--CCEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEE--CCCCCEEEE
T ss_conf 9860410078883889971554453221689--875887658998999866556146652143100000--145410799
Q ss_pred EEE-CCCEEEEEECCCE---------EECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 997-9949999935872---------210112688704569945999999998699399998
Q 001472 243 SGF-DDNLKVYSWEPVI---------CHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWV 294 (1072)
Q Consensus 243 sGs-dg~I~Iwdl~s~~---------~~~~i~~~~s~is~l~spDGklLasgs~DGsIrIWD 294 (1072)
+++ ++.+++|++.... +...+..+...+..+.+ ++.+|++++.||.|++||
T Consensus 233 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~-d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 233 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE-CSSCEEECCSSSEEEEEC
T ss_pred EECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEE-CCCEEEEEECCCEEEEEC
T ss_conf 9867997999988888644456775455784588998899997-199999992299899959
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.1e-27 Score=201.38 Aligned_cols=273 Identities=18% Similarity=0.215 Sum_probs=196.6
Q ss_pred EEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCC------EEEEEECCCCCEEEEEEC------C-CCCEEE
Q ss_conf 899854799869999911899399999789909999879994------279950799894799993------8-999999
Q 001472 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT------ALMSLCGLSSPVDSVAFD------S-AEVLVL 74 (1072)
Q Consensus 8 Ik~L~gHsg~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~~------~i~sl~~hs~~ItsLafS------P-dg~~La 74 (1072)
....++|.+.|.++++++ +++++++.|+.|+||+..... .......|...+..+.+. . ++.+++
T Consensus 7 ~~~~~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (393)
T d1sq9a_ 7 ANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 83 (393)
T ss_dssp EEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred EECCCCCCCCCEEEEEEC---CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEE
T ss_conf 520876367127999969---99999979996998789878877654046765420477167666750015799876899
Q ss_pred EEECCCEEEEEECCCCEE---E--EEEE-----CCCCCEEEEEECCC-----CCEEEEEECCCEEEEEECCCCE------
Q ss_conf 998699199998699906---9--9980-----78988279999379-----9899999689809999889990------
Q 001472 75 AGASTGVIKLWDLEESKM---V--RTLT-----GHKSNCTAVEFHPF-----GEFFASGCMDTNLKIWDIRKKG------ 133 (1072)
Q Consensus 75 tGS~DGsI~IWDl~tgk~---i--~tl~-----~h~~~VtsIafSPd-----gk~LaSgs~DGsI~IWDlrsgk------ 133 (1072)
+++.||.|.+|++..... . .... .+...+..++|.++ +.++++++.||.+.+|++....
T Consensus 84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~ 163 (393)
T d1sq9a_ 84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 163 (393)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEE
T ss_conf 99489919999822898205651245632431157896689998447886542179998389819998740477534102
Q ss_pred ---------EEEE---EECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE------ECCCCEEEEEECCC
Q ss_conf ---------7999---81689874899996899999999669929999989991689953------04886589998599
Q 001472 134 ---------CIHT---YKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK------FHEGHIRSIDFHPL 195 (1072)
Q Consensus 134 ---------~i~~---l~~h~~~VtsIafSPDG~~LvTGS~DGsI~IWDl~tgk~i~~l~------~h~g~ItsLafSPd 195 (1072)
.... ...+...+.+++|+|++ +|++|+.||.|++||+.+++.+..+. .|...|.+++|+|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 242 (393)
T d1sq9a_ 164 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242 (393)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred EEEECCCEECCCCEECCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 331032000145100025789867899978999-8999938982999860233211000011111242563877004665
Q ss_pred CCEEEEEECCC---EEEEEECCCCCEEEEEC-------------CCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCE
Q ss_conf 96999997899---39999889980887407-------------9987847999917999999997-9949999935872
Q 001472 196 EFLLATGSADR---TVKFWDLETFELIGSTR-------------PEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVI 258 (1072)
Q Consensus 196 g~lLaTgS~DG---tIrIWDl~tgk~i~~l~-------------~h~~~VtsIafSPDGk~LasGs-dg~I~Iwdl~s~~ 258 (1072)
+.+|++|+.|+ .|++||+.+++.+..+. +|...|.+++|+|++++|++++ |+.|++|+++.+.
T Consensus 243 g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~ 322 (393)
T d1sq9a_ 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 322 (393)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred CCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCCCC
T ss_conf 32011242898842100103532134443115666643102320235866600138988806987799989999999997
Q ss_pred EECCCCCCCCEE-----EEEEECCCCEEEEE
Q ss_conf 210112688704-----56994599999999
Q 001472 259 CHDSVDMGWSTL-----GDLCINDGKLLGCS 284 (1072)
Q Consensus 259 ~~~~i~~~~s~i-----s~l~spDGklLasg 284 (1072)
+...+..+...+ ...+.+++..++.+
T Consensus 323 ~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 323 RITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp EEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred EEEEECCCCCCCCCCCCEEEECCCCCEEEEC
T ss_conf 9999988687613773489999999999983
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.1e-25 Score=187.60 Aligned_cols=295 Identities=24% Similarity=0.363 Sum_probs=198.4
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 98799942799507998947999938999999998699199998699906999807898827999937998999996898
Q 001472 43 WAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122 (1072)
Q Consensus 43 WDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~DG 122 (1072)
|+....+....+.+|...|.+ +++++|++|++|+.||.|++||+.+++++..+.+|...|.+++|++ .+|++++.|+
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~ 77 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDR 77 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTS
T ss_pred CCCCCCCCCEEECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECC--CCCCCCEECC
T ss_conf 989988758898886875099-9997899999991899099998999979999948899989999479--8632100000
Q ss_pred EEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEE
Q ss_conf 09999889990799981689874899996899999999669929999989991689953048865899985999699999
Q 001472 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATG 202 (1072)
Q Consensus 123 sI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~LvTGS~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTg 202 (1072)
.+++|+............+...+....+. ...+..+..|+.+.+|+..+++....+........ .+......++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 153 (342)
T d2ovrb2 78 TLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYDGRRVVSG 153 (342)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE--EEEECSSCEEEE
T ss_pred CCCCCCCCCCCCEECCCCCCEEEEEEECC--CCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCE--EECCCCCEEEEE
T ss_conf 11111111000000012333047652024--65221234440378740355630011100111100--000133302433
Q ss_pred ECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCEEECCCCCCCCEEEEEEECCCCEE
Q ss_conf 7899399998899808874079987847999917999999997-994999993587221011268870456994599999
Q 001472 203 SADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLL 281 (1072)
Q Consensus 203 S~DGtIrIWDl~tgk~i~~l~~h~~~VtsIafSPDGk~LasGs-dg~I~Iwdl~s~~~~~~i~~~~s~is~l~spDGklL 281 (1072)
+.|+.|++||......+..+..+...+..+ .+++.++++++ ++.+++|++...........+...... +.+++++|
T Consensus 154 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~-~~~~~~~l 230 (342)
T d2ovrb2 154 AYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG-MELKDNIL 230 (342)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEE-EEEETTEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCCC--CCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEE-EECCCCEE
T ss_conf 589869995252343667872754442100--689999999958993999525565365674166532057-70689999
Q ss_pred EEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEE
Q ss_conf 9998699399998479932443127899999873199997999942229998961676068963577644069976
Q 001472 282 GCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIY 357 (1072)
Q Consensus 282 asgs~DGsIrIWDids~~l~~~~~~~~~~~~s~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD~es~eIv~i~ 357 (1072)
++++.||.|++|+............. ..+...+.++.|++ + .++.|...|.+++ .|.++++.....
T Consensus 231 ~s~s~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~-----~~~s~s~Dg~i~i--wd~~tg~~i~~~ 296 (342)
T d2ovrb2 231 VSGNADSTVKIWDIKTGQCLQTLQGP-NKHQSAVTCLQFNK--N-----FVITSSDDGTVKL--WDLKTGEFIRNL 296 (342)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECST-TSCSSCEEEEEECS--S-----EEEEEETTSEEEE--EETTTCCEEEEE
T ss_pred EEECCCCEEEEEECCCCCCCCCCCCC-CEEEECEEECCCCC--C-----EEEEECCCCEEEE--EECCCCCEEEEE
T ss_conf 99748988999865544221112210-00110100001379--8-----4499908998999--999999798998
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.6e-27 Score=202.30 Aligned_cols=269 Identities=16% Similarity=0.172 Sum_probs=192.1
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 67248998547998699999118993999997899099998799942799507998947999938999999998699199
Q 001472 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIK 83 (1072)
Q Consensus 4 tG~~Ik~L~gHsg~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~ 83 (1072)
.+++++.|.||.++|+|++|+| |++|+.||.|++|++.++ ...|...|.++.|++++ .+++++.|+.++
T Consensus 2 ~~~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~ 70 (287)
T d1pgua2 2 HDEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLK 70 (287)
T ss_dssp EEEEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEE
T ss_pred CCCEEEEECCCCCCEEEEEECC-----EEEEECCCEEEEEECCCC-----CCCCCCCEEEEEECCCC-EEEEEEECCCCC
T ss_conf 9603499988798649999895-----789848991999989998-----88877878999965997-289886101222
Q ss_pred EEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 99869990699980789882799993799899999689809999889990799981689874899996899999999669
Q 001472 84 LWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163 (1072)
Q Consensus 84 IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~LvTGS~D 163 (1072)
+|++...+ ....+.++.+++++..++++ .++.+.+|+...+..+..+..+ ..+ .++++++..+++++.+
T Consensus 71 ~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v~~~~ 139 (287)
T d1pgua2 71 VNGITKHE-------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQNYVAVGLEE 139 (287)
T ss_dssp ETTEEEEE-------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECS-SCE--EEEEECSSEEEEEETT
T ss_pred CCCCCCCC-------CCCCEEEEEECCCCCEEEEE-ECCCCEEEECCCEEEEEECCCC-CEE--EEEECCCCCEEEECCC
T ss_conf 11111111-------12210146641678569996-0332100001100354310122-203--5652147511100022
Q ss_pred C-EEEEEECCCCCEEEEEE-ECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE-EECCCCCCEEEEEEECCCC-
Q ss_conf 9-29999989991689953-048865899985999699999789939999889980887-4079987847999917999-
Q 001472 164 N-VVKVWDLTAGKLLHDFK-FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIG-STRPEVTGVHAITFHPDGR- 239 (1072)
Q Consensus 164 G-sI~IWDl~tgk~i~~l~-~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tgk~i~-~l~~h~~~VtsIafSPDGk- 239 (1072)
+ .+++|++........+. .+.+.+.+++|+|++.+|++++.||.|++||+.++.... .+..|...|.+++|+|.+.
T Consensus 140 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 219 (287)
T d1pgua2 140 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG 219 (287)
T ss_dssp TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC--
T ss_pred CCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 10002100012210001210247853699951676521101111110000002332110001111111100000136541
Q ss_pred ---------EEEEEE-CCCEEEEEECC-CEEECCCCCCCCEEE-EEEECCCCEEEEEECCCEEEEEEC
Q ss_conf ---------999997-99499999358-722101126887045-699459999999986993999984
Q 001472 240 ---------TLFSGF-DDNLKVYSWEP-VICHDSVDMGWSTLG-DLCINDGKLLGCSFYRNSVGIWVA 295 (1072)
Q Consensus 240 ---------~LasGs-dg~I~Iwdl~s-~~~~~~i~~~~s~is-~l~spDGklLasgs~DGsIrIWDi 295 (1072)
++++|+ |+.+++|+++. .........+...+. ..|.+++ .|++++.|+.|++|++
T Consensus 220 ~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp ----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEEE
T ss_conf 001267887027664999599988899975899927878985899998999-8999979992999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.3e-28 Score=208.06 Aligned_cols=290 Identities=13% Similarity=0.056 Sum_probs=211.8
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE---EEEECCCCCEEEEEECCC-CCEEEEEECCC
Q ss_conf 72489985479986999991189939999978990999987999427---995079989479999389-99999998699
Q 001472 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTAL---MSLCGLSSPVDSVAFDSA-EVLVLAGASTG 80 (1072)
Q Consensus 5 G~~Ik~L~gHsg~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~~~i---~sl~~hs~~ItsLafSPd-g~~LatGS~DG 80 (1072)
.++++...+|.+.|++|+|+|++ ++|++|+.||+|+|||+...... .....|..+|.+++|+++ +.+|++|+.||
T Consensus 1 ~~~v~~~~~h~d~I~~l~fsp~~-~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~ 79 (342)
T d1yfqa_ 1 MQIVQIEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG 79 (342)
T ss_dssp CEEEECSSCCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred CCEEECCCCCCCCEEEEEEECCC-CEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCC
T ss_conf 97597688998978889995899-99999979992999975699863689885589998899999589997899812653
Q ss_pred EEEEEECCCCEEEEEEECCCCC-EEEEEECCCCCEEEEEECCCEEEEEECCCCEE----EEEEECC--CCCEEEEEECCC
Q ss_conf 1999986999069998078988-27999937998999996898099998899907----9998168--987489999689
Q 001472 81 VIKLWDLEESKMVRTLTGHKSN-CTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC----IHTYKGH--TRGINTIRFTPD 153 (1072)
Q Consensus 81 sI~IWDl~tgk~i~tl~~h~~~-VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~----i~~l~~h--~~~VtsIafSPD 153 (1072)
.|.+|++...........+... .....+.++...+++++.++.+.+||++.... ......+ ......+.+.+.
T Consensus 80 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (342)
T d1yfqa_ 80 EILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN 159 (342)
T ss_dssp CEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECC
T ss_conf 11454204432000001111111111111111111111012221110202344433023000243001200000100016
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEE---EEEECCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEE---------
Q ss_conf 9999999669929999989991689---9530488658999859-99699999789939999889980887---------
Q 001472 154 GRWVVSGGFDNVVKVWDLTAGKLLH---DFKFHEGHIRSIDFHP-LEFLLATGSADRTVKFWDLETFELIG--------- 220 (1072)
Q Consensus 154 G~~LvTGS~DGsI~IWDl~tgk~i~---~l~~h~g~ItsLafSP-dg~lLaTgS~DGtIrIWDl~tgk~i~--------- 220 (1072)
+..+++++.|+.|++|++....... ........+.+..+.+ ++..+++++.||.+.+|+........
T Consensus 160 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~ 239 (342)
T d1yfqa_ 160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred CCCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEE
T ss_conf 87024651798478876056763411121025422101467636999878865489959999805986401112351256
Q ss_pred ------EECCCCCCEEEEEEECCCCEEEEEEC-CCEEEEEECCCEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf ------40799878479999179999999979-94999993587221011268870456994599999999869939999
Q 001472 221 ------STRPEVTGVHAITFHPDGRTLFSGFD-DNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIW 293 (1072)
Q Consensus 221 ------~l~~h~~~VtsIafSPDGk~LasGsd-g~I~Iwdl~s~~~~~~i~~~~s~is~l~spDGklLasgs~DGsIrIW 293 (1072)
....+...+.+++|+|++.+|++|+. +.|++||++.......+..........+.++++++++++.|+.+++|
T Consensus 240 ~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~ 319 (342)
T d1yfqa_ 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTN 319 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHC
T ss_pred EEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCEEEEEECCCCEEEE
T ss_conf 55531477762354315996698447999879998999999989498870589998799999479999999919927883
Q ss_pred EC
Q ss_conf 84
Q 001472 294 VA 295 (1072)
Q Consensus 294 Di 295 (1072)
..
T Consensus 320 ~~ 321 (342)
T d1yfqa_ 320 AA 321 (342)
T ss_dssp SS
T ss_pred EE
T ss_conf 01
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=5.1e-28 Score=205.63 Aligned_cols=310 Identities=9% Similarity=0.020 Sum_probs=224.8
Q ss_pred EEEEEEC-CCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC--EEEEEECCCCEEEEE
Q ss_conf 9999911-8993999997899099998799942799507998947999938999999998699--199998699906999
Q 001472 19 NCISIGK-KACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTG--VIKLWDLEESKMVRT 95 (1072)
Q Consensus 19 tsIafSP-dg~~lLaTGs~DGtI~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS~DG--sI~IWDl~tgk~i~t 95 (1072)
..-.||| || +++++++ +|.|++|++..+.... + .|...|.+++|+|+|++|++++.+. .|++||+.+++.. .
T Consensus 6 ~~~~fSP~dG-~~~a~~~-~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~ 80 (360)
T d1k32a3 6 FAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-K 80 (360)
T ss_dssp GEEEEEECGG-GCEEEEE-TTEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-E
T ss_pred HCCCCCCCCC-CEEEEEE-CCEEEEEECCCCCEEE-C-CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEE-E
T ss_conf 0051468899-9999998-9969999899994899-1-6999888899989999999999289989999989999488-7
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCE
Q ss_conf 807898827999937998999996898099998899907999816898748999968999999996----------6992
Q 001472 96 LTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGG----------FDNV 165 (1072)
Q Consensus 96 l~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~LvTGS----------~DGs 165 (1072)
+..|...+.+++|+|++++|++++.++.+++|++..+.....+..+...+.+++|+|+|++|+.+. .++.
T Consensus 81 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~ 160 (360)
T d1k32a3 81 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 160 (360)
T ss_dssp CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred EECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCC
T ss_conf 50897127741211454321000111110000012221000000135520230121322566521233121100025654
Q ss_pred EEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE-------EEECCCCCCEEEEEEECCC
Q ss_conf 999998999168995304886589998599969999978993999988998088-------7407998784799991799
Q 001472 166 VKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELI-------GSTRPEVTGVHAITFHPDG 238 (1072)
Q Consensus 166 I~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tgk~i-------~~l~~h~~~VtsIafSPDG 238 (1072)
+++|++.+++..... .+...+..+.|+|++..|++++.++.+.+|+....... .....+......+.|++++
T Consensus 161 ~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 239 (360)
T d1k32a3 161 IHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS 239 (360)
T ss_dssp EEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGG
T ss_pred EEEECCCCCCEEEEC-CCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCEECCCC
T ss_conf 266304557135303-5432211001257799999995998557533354402320364117985246960120687776
Q ss_pred CEEEEEECC----CEEEEEE--CCCEEECCCCCCCCEEEEEEECC---CCEEEEEECCCEEEEEECCCCCEEEEECCCCC
Q ss_conf 999999799----4999993--58722101126887045699459---99999998699399998479932443127899
Q 001472 239 RTLFSGFDD----NLKVYSW--EPVICHDSVDMGWSTLGDLCIND---GKLLGCSFYRNSVGIWVADVSHVEPYGVGAPE 309 (1072)
Q Consensus 239 k~LasGsdg----~I~Iwdl--~s~~~~~~i~~~~s~is~l~spD---GklLasgs~DGsIrIWDids~~l~~~~~~~~~ 309 (1072)
..+..+... ...+|.+ ...................+... +.+++.+..++.+.+|++..+....+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~------ 313 (360)
T d1k32a3 240 MTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV------ 313 (360)
T ss_dssp GSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE------
T ss_pred CCCCCCCEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEE------
T ss_conf 71553113652665400101247675267541389856999973599706999648998799997999749886------
Q ss_pred CCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEEECC
Q ss_conf 99987319999799994222999896167606896357
Q 001472 310 PDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPD 347 (1072)
Q Consensus 310 ~~~s~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD 347 (1072)
.+.+..++|||||+ .++.+...|.++.+-.+
T Consensus 314 --~~~v~~~~~SpDG~-----~l~~~~~Dg~i~v~d~~ 344 (360)
T d1k32a3 314 --KNNLTDLRLSADRK-----TVMVRKDDGKIYTFPLE 344 (360)
T ss_dssp --EEEEEEEEECTTSC-----EEEEEETTSCEEEEESS
T ss_pred --CCCCCEEEECCCCC-----EEEEEECCCEEEEEECC
T ss_conf --48868799999898-----99999789949999999
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=4.4e-25 Score=185.32 Aligned_cols=281 Identities=8% Similarity=-0.008 Sum_probs=199.8
Q ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEE---EEEEECCCCCEEEEEECCCC-CEEEEEECCCEE
Q ss_conf 42799507998947999938999999998699199998699906---99980789882799993799-899999689809
Q 001472 49 TALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM---VRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNL 124 (1072)
Q Consensus 49 ~~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~IWDl~tgk~---i~tl~~h~~~VtsIafSPdg-k~LaSgs~DGsI 124 (1072)
+.+....+|...|++++|+|++++|++++.||.|++||+..+.. ......|...|.+++|++++ .+|++|+.||.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCE
T ss_conf 75976889989788899958999999997999299997569986368988558999889999958999789981265311
Q ss_pred EEEECCCCEEEEEEECCCCC-EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE----EEC--CCCEEEEEECCCCC
Q ss_conf 99988999079998168987-489999689999999966992999998999168995----304--88658999859996
Q 001472 125 KIWDIRKKGCIHTYKGHTRG-INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF----KFH--EGHIRSIDFHPLEF 197 (1072)
Q Consensus 125 ~IWDlrsgk~i~~l~~h~~~-VtsIafSPDG~~LvTGS~DGsI~IWDl~tgk~i~~l----~~h--~g~ItsLafSPdg~ 197 (1072)
++|++...........+... .....+.++...+++++.++.+.+||++.+...... ..+ ......+.+.+.+.
T Consensus 82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECCCC
T ss_conf 45420443200000111111111111111111111101222111020234443302300024300120000010001687
Q ss_pred EEEEEECCCEEEEEECCCCCEE---EEECCCCCCEEEEEEE-CCCCEEEEEE-CCCEEEEEECCCEEECCC---------
Q ss_conf 9999978993999988998088---7407998784799991-7999999997-994999993587221011---------
Q 001472 198 LLATGSADRTVKFWDLETFELI---GSTRPEVTGVHAITFH-PDGRTLFSGF-DDNLKVYSWEPVICHDSV--------- 263 (1072)
Q Consensus 198 lLaTgS~DGtIrIWDl~tgk~i---~~l~~h~~~VtsIafS-PDGk~LasGs-dg~I~Iwdl~s~~~~~~i--------- 263 (1072)
.+++++.|+.|++|++...... .........+.+..+. .++..+++++ ++.+.+|.++........
T Consensus 162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T d1yfqa_ 162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred CEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEEEE
T ss_conf 02465179847887605676341112102542210146763699987886548995999980598640111235125655
Q ss_pred -------CCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEEC
Q ss_conf -------2688704569945999999998699399998479932443127899999873199997999942229998961
Q 001472 264 -------DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGR 336 (1072)
Q Consensus 264 -------~~~~s~is~l~spDGklLasgs~DGsIrIWDids~~l~~~~~~~~~~~~s~ItsVaFSPDGs~lLa~VlaiG~ 336 (1072)
..........+.|++++|++|+.||.|++||+..+...... ........++|+|+|+ .++++.
T Consensus 242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~-----~~~~~~~~~~~s~~~~-----~l~~a~ 311 (342)
T d1yfqa_ 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF-----AKFNEDSVVKIACSDN-----ILCLAT 311 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC-----CCCSSSEEEEEEECSS-----EEEEEE
T ss_pred EECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEE-----CCCCCCEEEEEEECCC-----EEEEEE
T ss_conf 531477762354315996698447999879998999999989498870-----5899987999994799-----999999
Q ss_pred CCC
Q ss_conf 676
Q 001472 337 STS 339 (1072)
Q Consensus 337 stG 339 (1072)
...
T Consensus 312 sdd 314 (342)
T d1yfqa_ 312 SDD 314 (342)
T ss_dssp ECT
T ss_pred CCC
T ss_conf 199
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=6.7e-23 Score=170.24 Aligned_cols=277 Identities=17% Similarity=0.315 Sum_probs=211.6
Q ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 42799507998947999938999999998699199998699906999807898827999937998999996898099998
Q 001472 49 TALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD 128 (1072)
Q Consensus 49 ~~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWD 128 (1072)
+.+.....|...|+|++| ++++|++|+.||.|++||+.+++++..+.+|...|.++.| ++++|++++.||.|++|+
T Consensus 6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD 81 (293)
T ss_dssp CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEE
T ss_pred EEEECCCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEC--CCCEEECCCCCCCCCCCC
T ss_conf 898432899998899987--6999999928993999999999199999267787763423--630021001110110000
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE---EEEEEECCCCEEEEEECCCCCEEEEEECC
Q ss_conf 899907999816898748999968999999996699299999899916---89953048865899985999699999789
Q 001472 129 IRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL---LHDFKFHEGHIRSIDFHPLEFLLATGSAD 205 (1072)
Q Consensus 129 lrsgk~i~~l~~h~~~VtsIafSPDG~~LvTGS~DGsI~IWDl~tgk~---i~~l~~h~g~ItsLafSPdg~lLaTgS~D 205 (1072)
+..+............ ...+.+....++++..++.+.+|+...... ...+..|...+..+.+. ...+++++.|
T Consensus 82 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d 157 (293)
T d1p22a2 82 VNTGEMLNTLIHHCEA--VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGD 157 (293)
T ss_dssp SSSCCEEEEECCCCSC--EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETT
T ss_pred CCCCCCCCCCCCCCCC--CCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEC--CCCCCCCCCC
T ss_conf 0246410011111100--00111111000001356630686134454442121000113543110000--0220110699
Q ss_pred CEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEE-ECCCEEEEEECCCEEECCCCCCCCEEEEEEECCCCEEEEE
Q ss_conf 939999889980887407998784799991799999999-7994999993587221011268870456994599999999
Q 001472 206 RTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCS 284 (1072)
Q Consensus 206 GtIrIWDl~tgk~i~~l~~h~~~VtsIafSPDGk~LasG-sdg~I~Iwdl~s~~~~~~i~~~~s~is~l~spDGklLasg 284 (1072)
+.|++||+.+++.+..+..+...+..+.++ +.+++++ .++.+++|++................. .+..++.+|+++
T Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~~~~~~~~l~sg 234 (293)
T d1p22a2 158 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR-CIRFDNKRIVSG 234 (293)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEECCSSEEEEE
T ss_pred CCEEEECCCCCCEEEEECCCCCCCCCCCCC--CCEEEEECCCCEEEEEECCCCEEEEEECCCCEEEE-ECCCCCEEEEEE
T ss_conf 860410078883889971554453221689--87588765899899986655614665214310000-014541079998
Q ss_pred ECCCEEEEEECCCCCEEE-----EECCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEE
Q ss_conf 869939999847993244-----31278999998731999979999422299989616760689
Q 001472 285 FYRNSVGIWVADVSHVEP-----YGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRS 343 (1072)
Q Consensus 285 s~DGsIrIWDids~~l~~-----~~~~~~~~~~s~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ 343 (1072)
+.||.|++|++....... .......+|.+.|.+++|+ +. .++.+..+|.+++
T Consensus 235 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~-----~l~s~s~Dg~i~i 291 (293)
T d1p22a2 235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EF-----QIVSSSHDDTILI 291 (293)
T ss_dssp ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SS-----CEEECCSSSEEEE
T ss_pred CCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC--CC-----EEEEEECCCEEEE
T ss_conf 679979999888886444567754557845889988999971--99-----9999922998999
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=3e-25 Score=186.52 Aligned_cols=268 Identities=15% Similarity=0.152 Sum_probs=190.0
Q ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCE------EEEEEECCCCCEEEEEEC---C----CCCEEEEE
Q ss_conf 9950799894799993899999999869919999869990------699980789882799993---7----99899999
Q 001472 52 MSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK------MVRTLTGHKSNCTAVEFH---P----FGEFFASG 118 (1072)
Q Consensus 52 ~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~IWDl~tgk------~i~tl~~h~~~VtsIafS---P----dgk~LaSg 118 (1072)
....+|...|.++++++ +++++++.|+.|++||..... .......|...+..+... + ++.+++++
T Consensus 8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred ECCCCCCCCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEE
T ss_conf 20876367127999969--9999997999699878987887765404676542047716766675001579987689999
Q ss_pred ECCCEEEEEECCCCEE---E--EEEE-----CCCCCEEEEEECCC-----CCEEEEEECCCEEEEEECCCCC--------
Q ss_conf 6898099998899907---9--9981-----68987489999689-----9999999669929999989991--------
Q 001472 119 CMDTNLKIWDIRKKGC---I--HTYK-----GHTRGINTIRFTPD-----GRWVVSGGFDNVVKVWDLTAGK-------- 175 (1072)
Q Consensus 119 s~DGsI~IWDlrsgk~---i--~~l~-----~h~~~VtsIafSPD-----G~~LvTGS~DGsI~IWDl~tgk-------- 175 (1072)
+.||.|++|++..... . .... .+...+..++|.++ +.++++++.||.+.+|++....
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred ECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEE
T ss_conf 48991999982289820565124563243115789668999844788654217999838981999874047753410233
Q ss_pred -------EEEE---EEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE------CCCCCCEEEEEEECCCC
Q ss_conf -------6899---5304886589998599969999978993999988998088740------79987847999917999
Q 001472 176 -------LLHD---FKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGST------RPEVTGVHAITFHPDGR 239 (1072)
Q Consensus 176 -------~i~~---l~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tgk~i~~l------~~h~~~VtsIafSPDGk 239 (1072)
.... ...+...+.+++|+|++ +|++|+.||.|++||+.+++.+..+ ..|..+|.+++|+|+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 244 (393)
T d1sq9a_ 166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244 (393)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred EECCCEECCCCEECCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 1032000145100025789867899978999-899993898299986023321100001111124256387700466532
Q ss_pred EEEEEECCC----EEEEEECCCEEECCCC--------------CCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE
Q ss_conf 999997994----9999935872210112--------------6887045699459999999986993999984799324
Q 001472 240 TLFSGFDDN----LKVYSWEPVICHDSVD--------------MGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVE 301 (1072)
Q Consensus 240 ~LasGsdg~----I~Iwdl~s~~~~~~i~--------------~~~s~is~l~spDGklLasgs~DGsIrIWDids~~l~ 301 (1072)
+|++|+++. +++|+.+.+.+...+. +...+....|++++++|++++.|+.|++||+..+...
T Consensus 245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~ 324 (393)
T d1sq9a_ 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 324 (393)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCCCCEE
T ss_conf 01124289884210010353213444311566664310232023586660013898880698779998999999999799
Q ss_pred EEECCCCCCCCCCE----EEEEECCCCCC
Q ss_conf 43127899999873----19999799994
Q 001472 302 PYGVGAPEPDQSIC----TEVKFNPPGSH 326 (1072)
Q Consensus 302 ~~~~~~~~~~~s~I----tsVaFSPDGs~ 326 (1072)
.... +|.+.+ ..+.|+|+|..
T Consensus 325 ~~l~----gH~~~v~~~~~~~~~~~~~~~ 349 (393)
T d1sq9a_ 325 TTLN----MHCDDIEIEEDILAVDEHGDS 349 (393)
T ss_dssp EEEE----CCGGGCSSGGGCCCBCTTSCB
T ss_pred EEEC----CCCCCCCCCCCEEEECCCCCE
T ss_conf 9998----868761377348999999999
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=1e-23 Score=175.85 Aligned_cols=316 Identities=13% Similarity=0.006 Sum_probs=194.9
Q ss_pred CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEE--EEEEE---CCCCCE
Q ss_conf 3999997899099998799942799507998947999938999999998699199998699906--99980---789882
Q 001472 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM--VRTLT---GHKSNC 103 (1072)
Q Consensus 29 ~lLaTGs~DGtI~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~IWDl~tgk~--i~tl~---~h~~~V 103 (1072)
-++++.+.||.|.|||..+++.+..+..+ ..+..++|+|||+++++++.||.+.+||+.+++. ...+. .|.+.+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~ 111 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE 111 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred EEEEEECCCCEEEEEECCCCCEEEEEECC-CCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEE
T ss_conf 89999769997999989998399997379-97137998899999999828999789981089812889984488987769
Q ss_pred EEEEECCCCCEE-EEEECCCEEEEEECCCCEEEEEEECC-----------CCCEEEEEECCCCCEE-EEEECCCEEEEEE
Q ss_conf 799993799899-99968980999988999079998168-----------9874899996899999-9996699299999
Q 001472 104 TAVEFHPFGEFF-ASGCMDTNLKIWDIRKKGCIHTYKGH-----------TRGINTIRFTPDGRWV-VSGGFDNVVKVWD 170 (1072)
Q Consensus 104 tsIafSPdgk~L-aSgs~DGsI~IWDlrsgk~i~~l~~h-----------~~~VtsIafSPDG~~L-vTGS~DGsI~IWD 170 (1072)
.+..|+|||+++ +++..++.|.+||..+++.+..+..+ ......+.+++++..+ ++...++.|.+||
T Consensus 112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d 191 (432)
T d1qksa2 112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 191 (432)
T ss_dssp ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred EECCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEE
T ss_conf 84321888888999817898279990765542254024776435220168885058998789998999981688299998
Q ss_pred CCCCCEEEEEE-ECCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCEEEEECC-----CCCCEEEEEEECCCCEEEE
Q ss_conf 89991689953-04886589998599969999978-99399998899808874079-----9878479999179999999
Q 001472 171 LTAGKLLHDFK-FHEGHIRSIDFHPLEFLLATGSA-DRTVKFWDLETFELIGSTRP-----EVTGVHAITFHPDGRTLFS 243 (1072)
Q Consensus 171 l~tgk~i~~l~-~h~g~ItsLafSPdg~lLaTgS~-DGtIrIWDl~tgk~i~~l~~-----h~~~VtsIafSPDGk~Las 243 (1072)
....+...... .+...+..+.|+|++.++++++. +..+.++|..+++.+..+.. +........+...+.....
T Consensus 192 ~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 271 (432)
T d1qksa2 192 YTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWAT 271 (432)
T ss_dssp TTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCCCCEECC
T ss_conf 43787522799833675426538898879999516663677761445268887214862245676641014898831021
Q ss_pred EE--CCCEEEEEECCCEEECCCCCCCCEEEEEEE-----------------------------------CCCCEEEEEEC
Q ss_conf 97--994999993587221011268870456994-----------------------------------59999999986
Q 001472 244 GF--DDNLKVYSWEPVICHDSVDMGWSTLGDLCI-----------------------------------NDGKLLGCSFY 286 (1072)
Q Consensus 244 Gs--dg~I~Iwdl~s~~~~~~i~~~~s~is~l~s-----------------------------------pDGklLasgs~ 286 (1072)
.. ++.+.+|....... ....|.....++. +|++.+++++.
T Consensus 272 ~~lg~~~v~~~~~~~~~~---~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~ 348 (432)
T d1qksa2 272 SHMGDDSVALIGTDPEGH---PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGS 348 (432)
T ss_dssp EBSSSSEEEEEECCTTTC---TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSS
T ss_pred CCCCCCEEEECCCCCCCC---CCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCCCCCEEEEEEEEECHHHCCCCC
T ss_conf 356883587624566555---46565777998868997688872688641021126788877035999996246104556
Q ss_pred CCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEE
Q ss_conf 99399998479932443127899999873199997999942229998961676068963577644069976
Q 001472 287 RNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIY 357 (1072)
Q Consensus 287 DGsIrIWDids~~l~~~~~~~~~~~~s~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD~es~eIv~i~ 357 (1072)
|+.+++|++... ..+ ..+...+..++|||||+++++.+-+.+...| ++.+.|..+.++....
T Consensus 349 d~~~k~w~~~~~--~~l-----~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g--~i~i~D~~T~k~~~~i 410 (432)
T d1qksa2 349 DPEFKTLPIAEW--AGI-----TEGQPRVVQGEFNKDGTEVWFSVWNGKDQES--ALVVVDDKTLELKHVI 410 (432)
T ss_dssp CCCEEEECHHHH--HTC-----CSSCCEEEEEEECTTSSEEEEEEECCTTSCC--EEEEEETTTTEEEEEE
T ss_pred CCCEEECCCCCC--CCC-----CCCCCCEEEEEECCCCCEEEEEEECCCCCCC--CEEEEECCCCEEEEEE
T ss_conf 784486334344--445-----7899868976798999999999704888888--6899999995588684
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=2.5e-25 Score=187.05 Aligned_cols=291 Identities=10% Similarity=0.042 Sum_probs=209.7
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCCEEEEEEC-CC-EEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf 72489985479986999991189939999978-99-09999879994279950799894799993899999999869919
Q 001472 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGD-DQ-KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVI 82 (1072)
Q Consensus 5 G~~Ik~L~gHsg~VtsIafSPdg~~lLaTGs~-DG-tI~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI 82 (1072)
+..+..+ +|.+.|.+++|+||| ++|++++. +| .|++|+..++. ...+..|...+.+++|+|++++|++++.++.+
T Consensus 33 ~~~~~~~-~~~~~v~~~~~spDg-~~l~~~~~~~g~~v~v~d~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~ 109 (360)
T d1k32a3 33 GTYVLKV-PEPLRIRYVRRGGDT-KVAFIHGTREGDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEI 109 (360)
T ss_dssp SSBEEEC-SCCSCEEEEEECSSS-EEEEEEEETTEEEEEEEETTTCC-EEECCCCCCSEEEEEECTTSSEEEEEETTSEE
T ss_pred CCCEEEC-CCCCCEEEEEECCCC-CEEEEEECCCCCEEEEEECCCCC-EEEEECCCCEEEEEEECCCCCCCCEECCCCCC
T ss_conf 9948991-699988889998999-99999992899899999899994-88750897127741211454321000111110
Q ss_pred EEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCEEEEEECCCCEEEEEEECCCCCEEEEEECC
Q ss_conf 9998699906999807898827999937998999996----------898099998899907999816898748999968
Q 001472 83 KLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGC----------MDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP 152 (1072)
Q Consensus 83 ~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs----------~DGsI~IWDlrsgk~i~~l~~h~~~VtsIafSP 152 (1072)
.+|++.+++....+..+...+.+++|+|+|++|+.+. .++.+++|++..++..... .+...+..+.|+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~sp 188 (360)
T d1k32a3 110 MTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDA 188 (360)
T ss_dssp EEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECT
T ss_pred CCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCCEEEECCCCCCEEEEC-CCCCCCCCCCCCC
T ss_conf 000012221000000135520230121322566521233121100025654266304557135303-5432211001257
Q ss_pred CCCEEEEEECCCEEEEEECCCCCE-------EEEEEECCCCEEEEEECCCCCEEEEEECCC-----EEEEEECCCCCEEE
Q ss_conf 999999996699299999899916-------899530488658999859996999997899-----39999889980887
Q 001472 153 DGRWVVSGGFDNVVKVWDLTAGKL-------LHDFKFHEGHIRSIDFHPLEFLLATGSADR-----TVKFWDLETFELIG 220 (1072)
Q Consensus 153 DG~~LvTGS~DGsI~IWDl~tgk~-------i~~l~~h~g~ItsLafSPdg~lLaTgS~DG-----tIrIWDl~tgk~i~ 220 (1072)
+|++|++++.++.+.+|+...... ...+..+......+.|++++..+..+..+. .+..++...+...
T Consensus 189 dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 267 (360)
T d1k32a3 189 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR- 267 (360)
T ss_dssp TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE-
T ss_pred CCCEEEEEECCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCEEECCCCCCEEECCCCCCCEE-
T ss_conf 7999999959985575333544023203641179852469601206877767155311365266540010124767526-
Q ss_pred EECCCCCCEEEEEEECCCC---EEEEEE-CCCEEEEEECCCEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 4079987847999917999---999997-994999993587221011268870456994599999999869939999847
Q 001472 221 STRPEVTGVHAITFHPDGR---TLFSGF-DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 221 ~l~~h~~~VtsIafSPDGk---~LasGs-dg~I~Iwdl~s~~~~~~i~~~~s~is~l~spDGklLasgs~DGsIrIWDid 296 (1072)
.+..+...+..+.+...+. +++.+. ++.+++|++...+..... ..+....+++||++|++++.||.|++|+++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~ 344 (360)
T d1k32a3 268 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344 (360)
T ss_dssp EEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---EEEEEEEECTTSCEEEEEETTSCEEEEESS
T ss_pred EEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEEC---CCCCEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf 75413898569999735997069996489987999979997498864---886879999989899999789949999999
Q ss_pred CCCEEEE
Q ss_conf 9932443
Q 001472 297 VSHVEPY 303 (1072)
Q Consensus 297 s~~l~~~ 303 (1072)
.+..+..
T Consensus 345 ~~~~~~~ 351 (360)
T d1k32a3 345 KPEDERT 351 (360)
T ss_dssp CTTSCEE
T ss_pred CCCCCEE
T ss_conf 9985459
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=9.1e-24 Score=176.26 Aligned_cols=332 Identities=11% Similarity=-0.028 Sum_probs=218.3
Q ss_pred EEECCCCC-EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEE--EE-
Q ss_conf 99118993-999997899099998799942799507998947999938999999998699199998699906999--80-
Q 001472 22 SIGKKACR-FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRT--LT- 97 (1072)
Q Consensus 22 afSPdg~~-lLaTGs~DGtI~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~IWDl~tgk~i~t--l~- 97 (1072)
.+..+... ++++...||.|.+||+.+++.+..+..+ ..+..++|+|||+++++++.||.+.+||+.+++.... +.
T Consensus 25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~ 103 (426)
T d1hzua2 25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI 103 (426)
T ss_dssp CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred CCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECC-CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEC
T ss_conf 2167987089999759997999999999599999689-980389998999999999589988999756886048999867
Q ss_pred --CCCCCEEEEEECCCCCEEEEE-ECCCEEEEEECCCCEEEEEEECCCC-----------CEEEEEECCCCCEEEEEEC-
Q ss_conf --789882799993799899999-6898099998899907999816898-----------7489999689999999966-
Q 001472 98 --GHKSNCTAVEFHPFGEFFASG-CMDTNLKIWDIRKKGCIHTYKGHTR-----------GINTIRFTPDGRWVVSGGF- 162 (1072)
Q Consensus 98 --~h~~~VtsIafSPdgk~LaSg-s~DGsI~IWDlrsgk~i~~l~~h~~-----------~VtsIafSPDG~~LvTGS~- 162 (1072)
+|...+.++.|+|||++++++ ..++.+.+||...+.+...+..+.. ....+.+++++..++....
T Consensus 104 ~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~ 183 (426)
T d1hzua2 104 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183 (426)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCC
T ss_conf 88876458850026889879996358976999857764125786226777364364278850389987878788885278
Q ss_pred CCEEEEEECCCCCEE-EEEEECCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCEEEEECCCC--CCEEEEEEECCC
Q ss_conf 992999998999168-995304886589998599969999978-9939999889980887407998--784799991799
Q 001472 163 DNVVKVWDLTAGKLL-HDFKFHEGHIRSIDFHPLEFLLATGSA-DRTVKFWDLETFELIGSTRPEV--TGVHAITFHPDG 238 (1072)
Q Consensus 163 DGsI~IWDl~tgk~i-~~l~~h~g~ItsLafSPdg~lLaTgS~-DGtIrIWDl~tgk~i~~l~~h~--~~VtsIafSPDG 238 (1072)
.+.+.+++....... .....+...+..+.|+|++.+++++.. +..+.+|+..+++.+....... .......+...+
T Consensus 184 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (426)
T d1hzua2 184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPK 263 (426)
T ss_dssp TTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETT
T ss_pred CCEEEEEEECCCCCEEEEEECCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCC
T ss_conf 97699999246652045775667753761377888678864201100000002556278875058744434201100698
Q ss_pred CE-E-EEE--ECCCEEEEEECCC-------EEECCCCC-CCCEEEEEEECCCCEEEE-------EECCCEEEEEECCCCC
Q ss_conf 99-9-999--7994999993587-------22101126-887045699459999999-------9869939999847993
Q 001472 239 RT-L-FSG--FDDNLKVYSWEPV-------ICHDSVDM-GWSTLGDLCINDGKLLGC-------SFYRNSVGIWVADVSH 299 (1072)
Q Consensus 239 k~-L-asG--sdg~I~Iwdl~s~-------~~~~~i~~-~~s~is~l~spDGklLas-------gs~DGsIrIWDids~~ 299 (1072)
.. + +.. .++.+.+|..... .....+.. ...+....++||+++|++ +..++.|++||+....
T Consensus 264 ~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~ 343 (426)
T d1hzua2 264 YGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 343 (426)
T ss_dssp TEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred CCCEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCC
T ss_conf 77457741578965988522566520330258689866887636787489986188850679880228879999898787
Q ss_pred EEEEEC------CCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEE
Q ss_conf 244312------7899999873199997999942229998961676068963577644069976
Q 001472 300 VEPYGV------GAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIY 357 (1072)
Q Consensus 300 l~~~~~------~~~~~~~s~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD~es~eIv~i~ 357 (1072)
...... .+ ..+...+..++|||||+.+++.+...+...| .+.+.|..+.++....
T Consensus 344 ~~~~~~~~~~~~~~-~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~--~i~v~D~~T~k~~~~i 404 (426)
T d1hzua2 344 AKYQVLPIAEWADL-GEGAKRVVQPEYNKRGDEVWFSVWNGKNDSS--ALVVVDDKTLKLKAVV 404 (426)
T ss_dssp SCCEEECHHHHHCC-CSSCCCEEEEEECSSSSEEEEEECCCTTSCC--EEEEEETTTTEEEEEE
T ss_pred CCEEEECCCHHCCC-CCCCCCEEEEEECCCCCEEEEEEECCCCCCC--EEEEEECCCCEEEEEE
T ss_conf 67089502110256-7788518987999999999999724888898--2999999987389998
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.94 E-value=2.7e-21 Score=159.13 Aligned_cols=267 Identities=14% Similarity=0.184 Sum_probs=214.0
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCEEEEEEECCCCCEEEEEE
Q ss_conf 999997899099998799942799507998947999938999999-9986991999986999069998078988279999
Q 001472 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVL-AGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEF 108 (1072)
Q Consensus 30 lLaTGs~DGtI~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~La-tGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsIaf 108 (1072)
.+++++.|+.|.+||+.+++.+..+.. ...+..++|+|+|++|+ ++..++.|.+||+.+++.+..+..+. ....+.|
T Consensus 4 ~yV~~~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~ 81 (301)
T d1l0qa2 4 AYIANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAV 81 (301)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEE
T ss_pred EEEEECCCCEEEEEECCCCEEEEEEEC-CCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCC-CCCCCCC
T ss_conf 999978999899999999959999988-99836999928989999997899989999999894103200024-6431100
Q ss_pred CCCCCEEEEE-ECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEE-EECCCEEEEEECCCCCEEEEEEECCCC
Q ss_conf 3799899999-68980999988999079998168987489999689999999-966992999998999168995304886
Q 001472 109 HPFGEFFASG-CMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVS-GGFDNVVKVWDLTAGKLLHDFKFHEGH 186 (1072)
Q Consensus 109 SPdgk~LaSg-s~DGsI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~LvT-GS~DGsI~IWDl~tgk~i~~l~~h~g~ 186 (1072)
++++.+++++ ..++.+.+|+...+.....+..+ ....++.|+|++..++. +..++.+.+|+..+......+.. ...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 159 (301)
T d1l0qa2 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRS 159 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSS
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCC-CCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEECCC-CCC
T ss_conf 0111111111111100110012430243202444-44237876058971554201111001100014630353156-788
Q ss_pred EEEEEECCCCCEEEEEECC-CEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEE-EC---CCEEEEEECCCEEEC
Q ss_conf 5899985999699999789-939999889980887407998784799991799999999-79---949999935872210
Q 001472 187 IRSIDFHPLEFLLATGSAD-RTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FD---DNLKVYSWEPVICHD 261 (1072)
Q Consensus 187 ItsLafSPdg~lLaTgS~D-GtIrIWDl~tgk~i~~l~~h~~~VtsIafSPDGk~LasG-sd---g~I~Iwdl~s~~~~~ 261 (1072)
+..+.+++++..++++..+ +.+.+|+............+ ..+..++|++++..++++ .+ +.+.+||........
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~ 238 (301)
T d1l0qa2 160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA 238 (301)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE
T ss_pred CEEEEEECCCCCEEEECCCCCCCCCCCCCCEEEEECCCCC-CCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEE
T ss_conf 4288860465401310121111111111100011101335-775031101111011110021000023236569981999
Q ss_pred CCCCCCCEEEEEEECCCCEE-EEEECCCEEEEEECCCCCEE
Q ss_conf 11268870456994599999-99986993999984799324
Q 001472 262 SVDMGWSTLGDLCINDGKLL-GCSFYRNSVGIWVADVSHVE 301 (1072)
Q Consensus 262 ~i~~~~s~is~l~spDGklL-asgs~DGsIrIWDids~~l~ 301 (1072)
.+..+..+....+++||++| ++++.++.|.+||+..+...
T Consensus 239 ~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~ 279 (301)
T d1l0qa2 239 RIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT 279 (301)
T ss_dssp EEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred EECCCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCEEE
T ss_conf 98489987799991898999999899996999999999599
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=2.4e-23 Score=173.33 Aligned_cols=266 Identities=13% Similarity=0.163 Sum_probs=198.2
Q ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 94279950799894799993899999999869919999869990699980789882799993799899999689809999
Q 001472 48 PTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIW 127 (1072)
Q Consensus 48 ~~~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI~IW 127 (1072)
.+.+..+.+|..+|.+++|++ |++|+.||.|++||+.++ ...|...|.++.|++++ .+++++.|+.+++|
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w 72 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN 72 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred CCEEEEECCCCCCEEEEEECC----EEEEECCCEEEEEECCCC-----CCCCCCCEEEEEECCCC-EEEEEEECCCCCCC
T ss_conf 603499988798649999895----789848991999989998-----88877878999965997-28988610122211
Q ss_pred ECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCC-
Q ss_conf 8899907999816898748999968999999996699299999899916899530488658999859996999997899-
Q 001472 128 DIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADR- 206 (1072)
Q Consensus 128 Dlrsgk~i~~l~~h~~~VtsIafSPDG~~LvTGS~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTgS~DG- 206 (1072)
++... . ....+.++.+.+++..+++ +.++.+.+|+...++.+..+.. ...+ .++++++..+++++.++
T Consensus 73 ~~~~~------~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~v~~~~~~ 141 (287)
T d1pgua2 73 GITKH------E-FGSQPKVASANNDGFTAVL-TNDDDLLILQSFTGDIIKSVRL-NSPG--SAVSLSQNYVAVGLEEGN 141 (287)
T ss_dssp TEEEE------E-CSSCEEEEEECSSSEEEEE-ETTSEEEEEETTTCCEEEEEEC-SSCE--EEEEECSSEEEEEETTTS
T ss_pred CCCCC------C-CCCCEEEEEECCCCCEEEE-EECCCCEEEECCCEEEEEECCC-CCEE--EEEECCCCCEEEECCCCC
T ss_conf 11111------1-1221014664167856999-6033210000110035431012-2203--565214751110002210
Q ss_pred EEEEEECCCCCEEEEEC-CCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCEEECC-CCCCCCEEE-EEEE-------
Q ss_conf 39999889980887407-9987847999917999999997-99499999358722101-126887045-6994-------
Q 001472 207 TVKFWDLETFELIGSTR-PEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDS-VDMGWSTLG-DLCI------- 275 (1072)
Q Consensus 207 tIrIWDl~tgk~i~~l~-~h~~~VtsIafSPDGk~LasGs-dg~I~Iwdl~s~~~~~~-i~~~~s~is-~l~s------- 275 (1072)
.+++|++.......... .+...+.+++|+|++.+|++|+ ++.+++|+......... +..+...+. ..+.
T Consensus 142 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 221 (287)
T d1pgua2 142 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGAN 221 (287)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC----
T ss_pred EEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 00210001221000121024785369995167652110111111000000233211000111111110000013654100
Q ss_pred ---CCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEE
Q ss_conf ---59999999986993999984799324431278999998731999979999422299989616760689
Q 001472 276 ---NDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRS 343 (1072)
Q Consensus 276 ---pDGklLasgs~DGsIrIWDids~~l~~~~~~~~~~~~s~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ 343 (1072)
.++.++++++.|+.|++|++.......... .+|...+.++.|+|++. ++..|. .|.+++
T Consensus 222 ~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~---~~h~~~V~~v~~~~~~~-----l~s~g~-D~~v~i 283 (287)
T d1pgua2 222 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL---NAHKDGVNNLLWETPST-----LVSSGA-DACIKR 283 (287)
T ss_dssp --CCSCCEEEEEETTSCEEEEESSCTTCCEEET---TSSTTCEEEEEEEETTE-----EEEEET-TSCEEE
T ss_pred CCCCCCCEEEEECCCCEEEEEECCCCCEEEEEE---CCCCCCEEEEEECCCCE-----EEEEEC-CCEEEE
T ss_conf 126788702766499959998889997589992---78789858999989998-----999979-992999
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=3.2e-22 Score=165.59 Aligned_cols=289 Identities=13% Similarity=0.087 Sum_probs=213.0
Q ss_pred CEEEEEECCCEEEEEECCCCCEEEEEECC--CCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCEEEEEEECCCC----
Q ss_conf 39999978990999987999427995079--98947999938999999-998699199998699906999807898----
Q 001472 29 RFLITGGDDQKVNLWAIGKPTALMSLCGL--SSPVDSVAFDSAEVLVL-AGASTGVIKLWDLEESKMVRTLTGHKS---- 101 (1072)
Q Consensus 29 ~lLaTGs~DGtI~IWDi~t~~~i~sl~~h--s~~ItsLafSPdg~~La-tGS~DGsI~IWDl~tgk~i~tl~~h~~---- 101 (1072)
.|+++++.|+.|.+||+.+++.+..+..+ ...+.+++|+|+|++++ +++.++.|.+||+.+++.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCC
T ss_conf 69999767998999999999499999877889982379999998999999789994999999999298887247773125
Q ss_pred -CEEEEEECCCCCEEEEEE------------CCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf -827999937998999996------------8980999988999079998168987489999689999999966992999
Q 001472 102 -NCTAVEFHPFGEFFASGC------------MDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKV 168 (1072)
Q Consensus 102 -~VtsIafSPdgk~LaSgs------------~DGsI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~LvTGS~DGsI~I 168 (1072)
.+..++|+|++++++++. .++.+.+||...+.....+.. ...+.+++|+++|+++++++. .+.+
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~ 158 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR--DLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS--SEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECCC-CCCCEEEEECCCCCEEEEECC--CCCE
T ss_conf 4025489868775799950477620342034555212035667759884145-687218998688888999717--7505
Q ss_pred EECCCCCEEEEEEECCCCEEEEEECCCCC------------------------EEEEEECCCEEEEEECCCCCEEEE-EC
Q ss_conf 99899916899530488658999859996------------------------999997899399998899808874-07
Q 001472 169 WDLTAGKLLHDFKFHEGHIRSIDFHPLEF------------------------LLATGSADRTVKFWDLETFELIGS-TR 223 (1072)
Q Consensus 169 WDl~tgk~i~~l~~h~g~ItsLafSPdg~------------------------lLaTgS~DGtIrIWDl~tgk~i~~-l~ 223 (1072)
||..+++....+..+... ....+.+++. .+..+..++.+.+|+..++..... +.
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred EEEECCCEEEEEECCCCC-CCCEECCCCCEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCEEEEEEC
T ss_conf 663037278886147754-3311357763140146653124663244410366045403676179998688858889832
Q ss_pred CCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-E
Q ss_conf 998784799991799999999799499999358722101126887045699459999999986993999984799324-4
Q 001472 224 PEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVE-P 302 (1072)
Q Consensus 224 ~h~~~VtsIafSPDGk~LasGsdg~I~Iwdl~s~~~~~~i~~~~s~is~l~spDGklLasgs~DGsIrIWDids~~l~-~ 302 (1072)
.+...+..+.+++++.+++.+ ++.+.+|++........+.....+....+++||++|++++.++.|.+||....... .
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~ 316 (337)
T d1pbyb_ 238 IMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp ECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEEECCCCEEEEEC-CCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEE
T ss_conf 887505888742661399973-5528999898896999974899889999978999999994999299999998769899
Q ss_pred EECCCCCCCCCCEEEEEECCC
Q ss_conf 312789999987319999799
Q 001472 303 YGVGAPEPDQSICTEVKFNPP 323 (1072)
Q Consensus 303 ~~~~~~~~~~s~ItsVaFSPD 323 (1072)
+.... .+......-..|++|
T Consensus 317 i~~~g-~~~~~~~~~~~~~~~ 336 (337)
T d1pbyb_ 317 VDLPG-NASMSLASVRLFTRD 336 (337)
T ss_dssp EECGG-GCCCBTCCCEEEECC
T ss_pred EECCC-CCCCCEEEEEEECCC
T ss_conf 98899-986512652587278
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.93 E-value=4.4e-21 Score=157.69 Aligned_cols=311 Identities=11% Similarity=0.080 Sum_probs=210.0
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE--EE---CCCCCEEEEEECCCCCEEEEE-
Q ss_conf 667248998547998699999118993999997899099998799942799--50---799894799993899999999-
Q 001472 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMS--LC---GLSSPVDSVAFDSAEVLVLAG- 76 (1072)
Q Consensus 3 ktG~~Ik~L~gHsg~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~~~i~s--l~---~hs~~ItsLafSPdg~~LatG- 76 (1072)
.+++.++.+..|. .+..++|+||| ++|++++.||.|++||+.+++.... +. +|...+.+++|+|+|++++++
T Consensus 50 ~t~~~~~~l~~g~-~~~~vafSPDG-k~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~ 127 (426)
T d1hzua2 50 DSKKIVKVIDTGY-AVHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA 127 (426)
T ss_dssp TTCSEEEEEECCS-SEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred CCCCEEEEEECCC-CEEEEEECCCC-CEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEE
T ss_conf 9995999996899-80389998999-999999589988999756886048999867888764588500268898799963
Q ss_pred ECCCEEEEEECCCCEEEEEEECCCCCE-----------EEEEECCCCCEEEEEEC-CCEEEEEECCCCEE-EEEEECCCC
Q ss_conf 869919999869990699980789882-----------79999379989999968-98099998899907-999816898
Q 001472 77 ASTGVIKLWDLEESKMVRTLTGHKSNC-----------TAVEFHPFGEFFASGCM-DTNLKIWDIRKKGC-IHTYKGHTR 143 (1072)
Q Consensus 77 S~DGsI~IWDl~tgk~i~tl~~h~~~V-----------tsIafSPdgk~LaSgs~-DGsI~IWDlrsgk~-i~~l~~h~~ 143 (1072)
..++.+.+||...+.+...+..+...+ ..+.+++++..++.... .+.+.+++...... ......+..
T Consensus 128 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 207 (426)
T d1hzua2 128 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP 207 (426)
T ss_dssp EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCS
T ss_pred CCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCC
T ss_conf 58976999857764125786226777364364278850389987878788885278976999992466520457756677
Q ss_pred CEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEEEEECCCC--EEEEEECC-CC-CEE-EEEECCCEEEEEECCC--
Q ss_conf 748999968999999996-6992999998999168995304886--58999859-99-699-9997899399998899--
Q 001472 144 GINTIRFTPDGRWVVSGG-FDNVVKVWDLTAGKLLHDFKFHEGH--IRSIDFHP-LE-FLL-ATGSADRTVKFWDLET-- 215 (1072)
Q Consensus 144 ~VtsIafSPDG~~LvTGS-~DGsI~IWDl~tgk~i~~l~~h~g~--ItsLafSP-dg-~lL-aTgS~DGtIrIWDl~t-- 215 (1072)
.+..+.|+|++++++++. .+..+.+|+..+++.+..+...... .....+.. .. ... +....|+.+.+|+...
T Consensus 208 ~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~ 287 (426)
T d1hzua2 208 FLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN 287 (426)
T ss_dssp SEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTT
T ss_pred CCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCC
T ss_conf 53761377888678864201100000002556278875058744434201100698774577415789659885225665
Q ss_pred -----CCEEEEECCCCCCEEEEEEECCCCEEEEEE--------CCCEEEEEECCCEEECCC----------CCCCCEEEE
Q ss_conf -----808874079987847999917999999997--------994999993587221011----------268870456
Q 001472 216 -----FELIGSTRPEVTGVHAITFHPDGRTLFSGF--------DDNLKVYSWEPVICHDSV----------DMGWSTLGD 272 (1072)
Q Consensus 216 -----gk~i~~l~~h~~~VtsIafSPDGk~LasGs--------dg~I~Iwdl~s~~~~~~i----------~~~~s~is~ 272 (1072)
++....+..|...+..++|+|+|++|++.. ++.+++|+.........+ .........
T Consensus 288 ~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~ 367 (426)
T d1hzua2 288 HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQP 367 (426)
T ss_dssp CTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEE
T ss_pred CCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCCEEEE
T ss_conf 20330258689866887636787489986188850679880228879999898787670895021102567788518987
Q ss_pred EEECCCCEEEEEE-----CCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCC
Q ss_conf 9945999999998-----6993999984799324431278999998731999979999
Q 001472 273 LCINDGKLLGCSF-----YRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 273 l~spDGklLasgs-----~DGsIrIWDids~~l~~~~~~~~~~~~s~ItsVaFSPDGs 325 (1072)
.|+|||++++.+. .+|.|.|||..+.++.....+. . .++|+|.
T Consensus 368 ~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~----~------~~tp~Gk 415 (426)
T d1hzua2 368 EYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP----R------LITPTGK 415 (426)
T ss_dssp EECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCT----T------CCSEEEE
T ss_pred EECCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEECCC----C------CCCCCCE
T ss_conf 9999999999997248888982999999987389998789----8------4199955
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.92 E-value=1.5e-19 Score=147.08 Aligned_cols=269 Identities=17% Similarity=0.165 Sum_probs=186.3
Q ss_pred EEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECC
Q ss_conf 9998699199998699906999807898827999937998999-996898099998899907999816898748999968
Q 001472 74 LAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFA-SGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP 152 (1072)
Q Consensus 74 atGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~La-Sgs~DGsI~IWDlrsgk~i~~l~~h~~~VtsIafSP 152 (1072)
++++.++.|.+||+.+++.+..+.. ......++|+|+|++++ ++..++.|.+||+.+++.+..+..+. .+..+.|++
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~ 83 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSP 83 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECT
T ss_pred EEECCCCEEEEEECCCCEEEEEEEC-CCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCC-CCCCCCCCC
T ss_conf 9978999899999999959999988-99836999928989999997899989999999894103200024-643110001
Q ss_pred CCCEEEE-EECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEEECCCCCCEE
Q ss_conf 9999999-96699299999899916899530488658999859996999997-899399998899808874079987847
Q 001472 153 DGRWVVS-GGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS-ADRTVKFWDLETFELIGSTRPEVTGVH 230 (1072)
Q Consensus 153 DG~~LvT-GS~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTgS-~DGtIrIWDl~tgk~i~~l~~h~~~Vt 230 (1072)
++.++++ +..++.+.+|+..+++....+.. .....++.|+|++..++..+ .++.+.+|+..+...+..+..+ ..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 161 (301)
T d1l0qa2 84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPK 161 (301)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEE
T ss_pred CCCCCCCCCCCCCEEEECCCCCCEEEEECCC-CCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEECCCC-CCCE
T ss_conf 1111111111110011001243024320244-4442378760589715542011110011000146303531567-8842
Q ss_pred EEEEECCCCEEEEEECC--CEEEEEECCCEEECCCCCCCCEEEEEEECCCCEEEEEEC---CCEEEEEECCCCCEEEEEC
Q ss_conf 99991799999999799--499999358722101126887045699459999999986---9939999847993244312
Q 001472 231 AITFHPDGRTLFSGFDD--NLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFY---RNSVGIWVADVSHVEPYGV 305 (1072)
Q Consensus 231 sIafSPDGk~LasGsdg--~I~Iwdl~s~~~~~~i~~~~s~is~l~spDGklLasgs~---DGsIrIWDids~~l~~~~~ 305 (1072)
.+.+++++..++++..+ .+.+|................+....+.+++..++.+.. ++.|.+||..........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~- 240 (301)
T d1l0qa2 162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI- 240 (301)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE-
T ss_pred EEEEECCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEE-
T ss_conf 8886046540131012111111111110001110133577503110111101111002100002323656998199998-
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEE
Q ss_conf 7899999873199997999942229998961676068963577644069976
Q 001472 306 GAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIY 357 (1072)
Q Consensus 306 ~~~~~~~s~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD~es~eIv~i~ 357 (1072)
.....+.+++|+|||+. +.+.+...+ .+.+.|.+++++....
T Consensus 241 ----~~~~~~~~va~spdg~~----l~va~~~~~--~i~v~D~~t~~~~~~~ 282 (301)
T d1l0qa2 241 ----PVGPDPAGIAVTPDGKK----VYVALSFCN--TVSVIDTATNTITATM 282 (301)
T ss_dssp ----ECCSSEEEEEECTTSSE----EEEEETTTT--EEEEEETTTTEEEEEE
T ss_pred ----CCCCCEEEEEEECCCCE----EEEEECCCC--EEEEEECCCCEEEEEE
T ss_conf ----48998779999189899----999989999--6999999999599999
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.91 E-value=1.7e-21 Score=160.52 Aligned_cols=275 Identities=12% Similarity=0.031 Sum_probs=193.0
Q ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE-CCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCEEEEEEEC
Q ss_conf 99911899399999789909999879994279950-7998947999938999999998-699199998699906999807
Q 001472 21 ISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLC-GLSSPVDSVAFDSAEVLVLAGA-STGVIKLWDLEESKMVRTLTG 98 (1072)
Q Consensus 21 IafSPdg~~lLaTGs~DGtI~IWDi~t~~~i~sl~-~hs~~ItsLafSPdg~~LatGS-~DGsI~IWDl~tgk~i~tl~~ 98 (1072)
++|++++ +||++++.++.|.+||+.+++.+..+. .+...+.+++|+|||+++++++ .++.|.+||+.+++.+..+..
T Consensus 2 ~a~~~~~-~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGH-EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp CCCCTTC-EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred CCCCCCC-CEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECC
T ss_conf 5588999-699998699979999999998999999489997045999789899999978999399996756713123103
Q ss_pred CCC------CEEEEEECCCCCEEEEEE------------CCCEEEEEECCCCEEEEEEE--CCCCCEEEEEECCCCCEEE
Q ss_conf 898------827999937998999996------------89809999889990799981--6898748999968999999
Q 001472 99 HKS------NCTAVEFHPFGEFFASGC------------MDTNLKIWDIRKKGCIHTYK--GHTRGINTIRFTPDGRWVV 158 (1072)
Q Consensus 99 h~~------~VtsIafSPdgk~LaSgs------------~DGsI~IWDlrsgk~i~~l~--~h~~~VtsIafSPDG~~Lv 158 (1072)
... .+..+.|+|+|+++++++ .++.+.+|+..++.....+. .....+..+.+++++.+++
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV 160 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred CCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCEEEE
T ss_conf 65434547741799990588889997057752156514676248998525632656887310247439999527878998
Q ss_pred EEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEE--------------------------EEEECCCEEEEEE
Q ss_conf 99669929999989991689953048865899985999699--------------------------9997899399998
Q 001472 159 SGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLL--------------------------ATGSADRTVKFWD 212 (1072)
Q Consensus 159 TGS~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lL--------------------------aTgS~DGtIrIWD 212 (1072)
. ++.+.+|++.+++.+..+..+. ....+.++|++..+ .++..++.+.+|+
T Consensus 161 ~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
T d1jmxb_ 161 A---GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236 (346)
T ss_dssp E---SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred E---CCCCEEEECCCCCEEEEEECCC-CCCCEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEE
T ss_conf 4---7962699806997899996489-86623771255289998649981676512311126732575404783499997
Q ss_pred CCCCCEEEE-ECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEE
Q ss_conf 899808874-0799878479999179999999979949999935872210112688704569945999999998699399
Q 001472 213 LETFELIGS-TRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVG 291 (1072)
Q Consensus 213 l~tgk~i~~-l~~h~~~VtsIafSPDGk~LasGsdg~I~Iwdl~s~~~~~~i~~~~s~is~l~spDGklLasgs~DGsIr 291 (1072)
+.++..... ...+...+..+.+++++.+++....+.+.+|+....+....+..+..+....+++||+++++++.|+.|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~ 316 (346)
T d1jmxb_ 237 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLA 316 (346)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEE
T ss_pred CCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEE
T ss_conf 77883687876315660688897179978999429838999899993999974999778999968999999994899299
Q ss_pred EEECCCCCE
Q ss_conf 998479932
Q 001472 292 IWVADVSHV 300 (1072)
Q Consensus 292 IWDids~~l 300 (1072)
+||......
T Consensus 317 v~D~~t~~~ 325 (346)
T d1jmxb_ 317 VFNPDTLEK 325 (346)
T ss_dssp EEETTTTEE
T ss_pred EEECCCCCE
T ss_conf 999965879
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=1.9e-20 Score=153.24 Aligned_cols=189 Identities=10% Similarity=-0.001 Sum_probs=86.6
Q ss_pred EEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEE--EEEEE---CCCCCEEE
Q ss_conf 99998699199998699906999807898827999937998999996898099998899907--99981---68987489
Q 001472 73 VLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC--IHTYK---GHTRGINT 147 (1072)
Q Consensus 73 LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~--i~~l~---~h~~~Vts 147 (1072)
+++.+.+|.|.+||..+++.+..+..+ ..+..++|+|||+++++++.||.+.+||+.+++. ...+. .|...+.+
T Consensus 35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s 113 (432)
T d1qksa2 35 SVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS 113 (432)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred EEEECCCCEEEEEECCCCCEEEEEECC-CCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEE
T ss_conf 999769997999989998399997379-9713799889999999982899978998108981288998448898776984
Q ss_pred EEECCCCCEE-EEEECCCEEEEEECCCCCEEEEEEEC-----------CCCEEEEEECCCCCEEE-EEECCCEEEEEECC
Q ss_conf 9996899999-99966992999998999168995304-----------88658999859996999-99789939999889
Q 001472 148 IRFTPDGRWV-VSGGFDNVVKVWDLTAGKLLHDFKFH-----------EGHIRSIDFHPLEFLLA-TGSADRTVKFWDLE 214 (1072)
Q Consensus 148 IafSPDG~~L-vTGS~DGsI~IWDl~tgk~i~~l~~h-----------~g~ItsLafSPdg~lLa-TgS~DGtIrIWDl~ 214 (1072)
..|+|||++| ++++.++.|.+||..+++++..+..+ .+....+.++|++..++ +...++.|.+|+..
T Consensus 114 ~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~ 193 (432)
T d1qksa2 114 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT 193 (432)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred CCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECC
T ss_conf 32188888899981789827999076554225402477643522016888505899878999899998168829999843
Q ss_pred CCCEEEEEC-CCCCCEEEEEEECCCCEEEEEEC--CCEEEEEECCCEEECC
Q ss_conf 980887407-99878479999179999999979--9499999358722101
Q 001472 215 TFELIGSTR-PEVTGVHAITFHPDGRTLFSGFD--DNLKVYSWEPVICHDS 262 (1072)
Q Consensus 215 tgk~i~~l~-~h~~~VtsIafSPDGk~LasGsd--g~I~Iwdl~s~~~~~~ 262 (1072)
..+...... .....+..+.|+|+|+++++++. +.+.+++.........
T Consensus 194 ~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~ 244 (432)
T d1qksa2 194 DLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI 244 (432)
T ss_dssp CSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred CCCCCEEEEECCCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 787522799833675426538898879999516663677761445268887
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.89 E-value=2.4e-17 Score=131.87 Aligned_cols=284 Identities=8% Similarity=-0.067 Sum_probs=178.5
Q ss_pred EEECCCCCEEEEEEECCCCCEEEEE----ECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEC-------
Q ss_conf 9854799869999911899399999----78990999987999427995079989479999389999999986-------
Q 001472 10 EFVAHSANVNCISIGKKACRFLITG----GDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS------- 78 (1072)
Q Consensus 10 ~L~gHsg~VtsIafSPdg~~lLaTG----s~DGtI~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS~------- 78 (1072)
....+.+++.+++++|++.+++++. +..+.|.+||..+++.+..+..+..+ .++|+|+|++|+++..
T Consensus 15 a~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~ 92 (373)
T d2madh_ 15 AAGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAK 92 (373)
T ss_pred HCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCC
T ss_conf 1456789865630189997899973422578765999989999799999579886--07986899989999605775321
Q ss_pred ---CCEEEEEECCCCEEEEEEECCCCCE-------EEEEECCCCCEEEEEE--CCCEEEEEECCCCEEEEEEECCCCCEE
Q ss_conf ---9919999869990699980789882-------7999937998999996--898099998899907999816898748
Q 001472 79 ---TGVIKLWDLEESKMVRTLTGHKSNC-------TAVEFHPFGEFFASGC--MDTNLKIWDIRKKGCIHTYKGHTRGIN 146 (1072)
Q Consensus 79 ---DGsI~IWDl~tgk~i~tl~~h~~~V-------tsIafSPdgk~LaSgs--~DGsI~IWDlrsgk~i~~l~~h~~~Vt 146 (1072)
++.|.+||..+++.+..+..+.... ..+.|+++++.+++.. .++.+.+|+....+..... ....
T Consensus 93 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 168 (373)
T d2madh_ 93 GKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPT 168 (373)
T ss_pred CCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEE----CCCE
T ss_conf 245318999977789388897268851368516897089985899379999869874677623687289982----4520
Q ss_pred EEEECCCCCEE-EEEECCCEEEEEECCCCCEEEEEEECC------CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE
Q ss_conf 99996899999-999669929999989991689953048------86589998599969999978993999988998088
Q 001472 147 TIRFTPDGRWV-VSGGFDNVVKVWDLTAGKLLHDFKFHE------GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELI 219 (1072)
Q Consensus 147 sIafSPDG~~L-vTGS~DGsI~IWDl~tgk~i~~l~~h~------g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tgk~i 219 (1072)
++.+++++..+ ++.+.|+.+.+|+...+........+. .....+.+.+++.++ ..+.++.+.+|+.......
T Consensus 169 ~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~ 247 (373)
T d2madh_ 169 CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISAAGAT 247 (373)
T ss_pred EEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCCEEE-EECCCCEEEEEECCCCEEE
T ss_conf 699962899199999479939999747742667886300366753043458878994299-9258965999976899078
Q ss_pred E--EECCCCCCEE----------EEEEECCCCEEEEE-----------ECCCEEEEEECCCEEECCCCCCCCEEEEEEEC
Q ss_conf 7--4079987847----------99991799999999-----------79949999935872210112688704569945
Q 001472 220 G--STRPEVTGVH----------AITFHPDGRTLFSG-----------FDDNLKVYSWEPVICHDSVDMGWSTLGDLCIN 276 (1072)
Q Consensus 220 ~--~l~~h~~~Vt----------sIafSPDGk~LasG-----------sdg~I~Iwdl~s~~~~~~i~~~~s~is~l~sp 276 (1072)
. .......... .+++++++..++.. ..+.+.+|+...+.....+..+..+....+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~sp 327 (373)
T d2madh_ 248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQ 327 (373)
T ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECC
T ss_conf 97763056475786641367413357714997599954888247862589869999899996989866899825899998
Q ss_pred CCC--EEEEEECCCEEEEEECCCCCE
Q ss_conf 999--999998699399998479932
Q 001472 277 DGK--LLGCSFYRNSVGIWVADVSHV 300 (1072)
Q Consensus 277 DGk--lLasgs~DGsIrIWDids~~l 300 (1072)
||+ ++++++.|+.|++||...+..
T Consensus 328 DG~~~l~vt~~~d~~v~v~D~~tg~~ 353 (373)
T d2madh_ 328 DGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CCCEEEEEEECCCCEEEEEECCCCCE
T ss_conf 99989999967999299999999989
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=2.5e-17 Score=131.77 Aligned_cols=270 Identities=14% Similarity=0.182 Sum_probs=179.3
Q ss_pred CEEEEEECCCEEEEEECCCCCEEE--EEECCCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCEEEEE---EECCCCC
Q ss_conf 399999789909999879994279--95079989479999389999999986-99199998699906999---8078988
Q 001472 29 RFLITGGDDQKVNLWAIGKPTALM--SLCGLSSPVDSVAFDSAEVLVLAGAS-TGVIKLWDLEESKMVRT---LTGHKSN 102 (1072)
Q Consensus 29 ~lLaTGs~DGtI~IWDi~t~~~i~--sl~~hs~~ItsLafSPdg~~LatGS~-DGsI~IWDl~tgk~i~t---l~~h~~~ 102 (1072)
..++++..|+.|++|++.....+. ....+...+..++|+|+|++|++++. ++.|.+|++........ ...+...
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS 84 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCC
T ss_conf 99998789993899998399976999997579988689995897999999778996999999689870798530136998
Q ss_pred EEEEEECCCCCEEEEEEC-CCEEEEEECCCCEEEEE--EECCCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCEEE
Q ss_conf 279999379989999968-98099998899907999--8168987489999689999999966-9929999989991689
Q 001472 103 CTAVEFHPFGEFFASGCM-DTNLKIWDIRKKGCIHT--YKGHTRGINTIRFTPDGRWVVSGGF-DNVVKVWDLTAGKLLH 178 (1072)
Q Consensus 103 VtsIafSPdgk~LaSgs~-DGsI~IWDlrsgk~i~~--l~~h~~~VtsIafSPDG~~LvTGS~-DGsI~IWDl~tgk~i~ 178 (1072)
+..++|+|+|+++++++. ++.+.+|+......... ...+...+.++.++|++++++.++. +..|.+|+........
T Consensus 85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~ 164 (333)
T d1ri6a_ 85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 164 (333)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred CEEEEECCCCCEEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCE
T ss_conf 54999959998874205688830220011100000010037785314988630101310256554205689732687410
Q ss_pred EEE------ECCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCC----EEEEEC------CCCCCEEEEEEECCCCEE
Q ss_conf 953------0488658999859996999997-89939999889980----887407------998784799991799999
Q 001472 179 DFK------FHEGHIRSIDFHPLEFLLATGS-ADRTVKFWDLETFE----LIGSTR------PEVTGVHAITFHPDGRTL 241 (1072)
Q Consensus 179 ~l~------~h~g~ItsLafSPdg~lLaTgS-~DGtIrIWDl~tgk----~i~~l~------~h~~~VtsIafSPDGk~L 241 (1072)
... ........+.|++++.+++... ..+...+|+..... ...... ........++++++++++
T Consensus 165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~ 244 (333)
T d1ri6a_ 165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 244 (333)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred EEECEEEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCE
T ss_conf 01000133403887527999602014786204667217885103555202100223430687765531268995156720
Q ss_pred EEEE--CCCEEEEEECCCEEEC----CCCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCC
Q ss_conf 9997--9949999935872210----112688704569945999999998-6993999984799
Q 001472 242 FSGF--DDNLKVYSWEPVICHD----SVDMGWSTLGDLCINDGKLLGCSF-YRNSVGIWVADVS 298 (1072)
Q Consensus 242 asGs--dg~I~Iwdl~s~~~~~----~i~~~~s~is~l~spDGklLasgs-~DGsIrIWDids~ 298 (1072)
+... .+.+.+|.+....... ....+..+....++|||++|++++ .++.|.+|+++..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~ 308 (333)
T d1ri6a_ 245 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE 308 (333)
T ss_dssp EEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred EEECCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECC
T ss_conf 5504568827878873999789999996789976289990798999999889993999999799
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=2e-18 Score=139.29 Aligned_cols=271 Identities=14% Similarity=0.035 Sum_probs=189.8
Q ss_pred CEEEEEECCCEEEEEECCCCEEEEEEECC--CCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCEEEEEEECCCC----
Q ss_conf 99999986991999986999069998078--98827999937998999-996898099998899907999816898----
Q 001472 71 VLVLAGASTGVIKLWDLEESKMVRTLTGH--KSNCTAVEFHPFGEFFA-SGCMDTNLKIWDIRKKGCIHTYKGHTR---- 143 (1072)
Q Consensus 71 ~~LatGS~DGsI~IWDl~tgk~i~tl~~h--~~~VtsIafSPdgk~La-Sgs~DGsI~IWDlrsgk~i~~l~~h~~---- 143 (1072)
.++++++.|+.|.+||+.+++.+..+..+ ...+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCC
T ss_conf 69999767998999999999499999877889982379999998999999789994999999999298887247773125
Q ss_pred -CEEEEEECCCCCEEEEEE------------CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf -748999968999999996------------6992999998999168995304886589998599969999978993999
Q 001472 144 -GINTIRFTPDGRWVVSGG------------FDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF 210 (1072)
Q Consensus 144 -~VtsIafSPDG~~LvTGS------------~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTgS~DGtIrI 210 (1072)
.+..++|+|++++++++. .+..+.+||..++.....+.. ...+..++|+|++.++++++. .+.+
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~ 158 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR--DLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS--SEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECCC-CCCCEEEEECCCCCEEEEECC--CCCE
T ss_conf 4025489868775799950477620342034555212035667759884145-687218998688888999717--7505
Q ss_pred EECCCCCEEEEECCCCCCEEEEEEECCCCEEE-------------------------EEECCCEEEEEECCCEEECC--C
Q ss_conf 98899808874079987847999917999999-------------------------99799499999358722101--1
Q 001472 211 WDLETFELIGSTRPEVTGVHAITFHPDGRTLF-------------------------SGFDDNLKVYSWEPVICHDS--V 263 (1072)
Q Consensus 211 WDl~tgk~i~~l~~h~~~VtsIafSPDGk~La-------------------------sGsdg~I~Iwdl~s~~~~~~--i 263 (1072)
||..+++....+..+.. .....+.+++..+. ...+..+.+|++..+..... .
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred EEEECCCEEEEEECCCC-CCCCEECCCCCEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCEEEEEEC
T ss_conf 66303727888614775-43311357763140146653124663244410366045403676179998688858889832
Q ss_pred CCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEE
Q ss_conf 26887045699459999999986993999984799324431278999998731999979999422299989616760689
Q 001472 264 DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRS 343 (1072)
Q Consensus 264 ~~~~s~is~l~spDGklLasgs~DGsIrIWDids~~l~~~~~~~~~~~~s~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ 343 (1072)
..........+.+++.+++.+ ++.|.+||+......... .+...+.+++|+|||+ .++++...|. +
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~-----~~~~~~~~~~~s~dG~-----~l~v~~~~~~--i 303 (337)
T d1pbyb_ 238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV-----PLPHSYYSVNVSTDGS-----TVWLGGALGD--L 303 (337)
T ss_dssp ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE-----ECSSCCCEEEECTTSC-----EEEEESBSSE--E
T ss_pred CCCCCEEEEEECCCCEEEEEC--CCCEEEEECCCCCEEEEE-----CCCCCEEEEEECCCCC-----EEEEEECCCC--E
T ss_conf 887505888742661399973--552899989889699997-----4899889999978999-----9999949992--9
Q ss_pred EECCCCCCCEE-EEEEC
Q ss_conf 63577644069-97636
Q 001472 344 TSPDYETKDIK-TIYVD 359 (1072)
Q Consensus 344 ivpD~es~eIv-~i~iD 359 (1072)
.+.|.++.+.+ .+...
T Consensus 304 ~v~D~~t~~~v~~i~~~ 320 (337)
T d1pbyb_ 304 AAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEEETTTCCEEEEEECG
T ss_pred EEEECCCCCEEEEEECC
T ss_conf 99999987698999889
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=2.2e-17 Score=132.08 Aligned_cols=289 Identities=12% Similarity=0.119 Sum_probs=192.2
Q ss_pred EEEEEECCCEEEEEECCCCEE---EEEEECCCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCEEEEE---EECCCCC
Q ss_conf 999998699199998699906---9998078988279999379989999968-98099998899907999---8168987
Q 001472 72 LVLAGASTGVIKLWDLEESKM---VRTLTGHKSNCTAVEFHPFGEFFASGCM-DTNLKIWDIRKKGCIHT---YKGHTRG 144 (1072)
Q Consensus 72 ~LatGS~DGsI~IWDl~tgk~---i~tl~~h~~~VtsIafSPdgk~LaSgs~-DGsI~IWDlrsgk~i~~---l~~h~~~ 144 (1072)
.++++..++.|++|++..... +..+ .+.+.+..++|+|||++|++++. ++.|.+|++........ ...+...
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS 84 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEEE-CCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCC
T ss_conf 9998789993899998399976999997-579988689995897999999778996999999689870798530136998
Q ss_pred EEEEEECCCCCEEEEEEC-CCEEEEEECCCCCEEEEE--EECCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCEEE
Q ss_conf 489999689999999966-992999998999168995--304886589998599969999978-9939999889980887
Q 001472 145 INTIRFTPDGRWVVSGGF-DNVVKVWDLTAGKLLHDF--KFHEGHIRSIDFHPLEFLLATGSA-DRTVKFWDLETFELIG 220 (1072)
Q Consensus 145 VtsIafSPDG~~LvTGS~-DGsI~IWDl~tgk~i~~l--~~h~g~ItsLafSPdg~lLaTgS~-DGtIrIWDl~tgk~i~ 220 (1072)
+..++|+|||++|++++. ++.+.+|+.......... ..+...+.++.++|++.+++.++. +..|.+|+........
T Consensus 85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~ 164 (333)
T d1ri6a_ 85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 164 (333)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred CEEEEECCCCCEEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCE
T ss_conf 54999959998874205688830220011100000010037785314988630101310256554205689732687410
Q ss_pred ------EECCCCCCEEEEEEECCCCEEEEEE--CCCEEEEEECCCEEEC-------C----CCCCCCEEEEEEECCCCEE
Q ss_conf ------4079987847999917999999997--9949999935872210-------1----1268870456994599999
Q 001472 221 ------STRPEVTGVHAITFHPDGRTLFSGF--DDNLKVYSWEPVICHD-------S----VDMGWSTLGDLCINDGKLL 281 (1072)
Q Consensus 221 ------~l~~h~~~VtsIafSPDGk~LasGs--dg~I~Iwdl~s~~~~~-------~----i~~~~s~is~l~spDGklL 281 (1072)
...........++|++++.+++... .+...+|.+....... . ...........++++++++
T Consensus 165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~ 244 (333)
T d1ri6a_ 165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 244 (333)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred EEECEEEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCE
T ss_conf 01000133403887527999602014786204667217885103555202100223430687765531268995156720
Q ss_pred EEEE-CCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEEECC
Q ss_conf 9998-699399998479932443127899999873199997999942229998961676068963577644069976368
Q 001472 282 GCSF-YRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDS 360 (1072)
Q Consensus 282 asgs-~DGsIrIWDids~~l~~~~~~~~~~~~s~ItsVaFSPDGs~lLa~VlaiG~stG~~r~ivpD~es~eIv~i~iDs 360 (1072)
+... .++.+.+|+++........... ......+..++|+|||+. +.+.+...+.++.+..|.+++.+..+..-.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~a~spDGk~----l~va~~~~~~v~v~~id~~tG~l~~~~~~~ 319 (333)
T d1ri6a_ 245 YACDRTASLITVFSVSEDGSVLSKEGF-QPTETQPRGFNVDHSGKY----LIAAGQKSHHISVYEIVGEQGLLHEKGRYA 319 (333)
T ss_dssp EEEETTTTEEEEEEECTTSCCEEEEEE-EECSSSCCCEEECTTSSE----EEEECTTTCEEEEEEEETTTTEEEEEEEEE
T ss_pred EEECCCCCEEEEEEECCCCCEEEEEEE-ECCCCCEEEEEEECCCCE----EEEEECCCCEEEEEEEECCCCCEEEEEECC
T ss_conf 550456882787887399978999999-678997628999079899----999988999399999979999689998334
Q ss_pred CCCCCC
Q ss_conf 999420
Q 001472 361 TGGKPV 366 (1072)
Q Consensus 361 ~gGepv 366 (1072)
.|+.|+
T Consensus 320 ~g~~p~ 325 (333)
T d1ri6a_ 320 VGQGPM 325 (333)
T ss_dssp CSSSCC
T ss_pred CCCCCC
T ss_conf 799985
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.86 E-value=1.3e-18 Score=140.66 Aligned_cols=279 Identities=9% Similarity=-0.022 Sum_probs=191.4
Q ss_pred EEECCCCCEEEEEECCCEEEEEECCCCEEEEEEEC-CCCCEEEEEECCCCCEEEEE-ECCCEEEEEECCCCEEEEEEECC
Q ss_conf 99938999999998699199998699906999807-89882799993799899999-68980999988999079998168
Q 001472 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG-HKSNCTAVEFHPFGEFFASG-CMDTNLKIWDIRKKGCIHTYKGH 141 (1072)
Q Consensus 64 LafSPdg~~LatGS~DGsI~IWDl~tgk~i~tl~~-h~~~VtsIafSPdgk~LaSg-s~DGsI~IWDlrsgk~i~~l~~h 141 (1072)
++|++++++|++++.++.|.+||+.+++.+..+.. +.....+++|+|||++++++ ..++.|++||+.+++.+..+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCC
T ss_conf 55889996999986999799999999989999994899970459997898999999789993999967567131231036
Q ss_pred CC------CEEEEEECCCCCEEEEEE------------CCCEEEEEECCCCCEEEEEEEC--CCCEEEEEECCCCCEEEE
Q ss_conf 98------748999968999999996------------6992999998999168995304--886589998599969999
Q 001472 142 TR------GINTIRFTPDGRWVVSGG------------FDNVVKVWDLTAGKLLHDFKFH--EGHIRSIDFHPLEFLLAT 201 (1072)
Q Consensus 142 ~~------~VtsIafSPDG~~LvTGS------------~DGsI~IWDl~tgk~i~~l~~h--~g~ItsLafSPdg~lLaT 201 (1072)
.. .+..++|+|||+++++++ .++.+.+|+..+++....+..+ ...+..+.+++++.+++.
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA 161 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCEEEEE
T ss_conf 54345477417999905888899970577521565146762489985256326568873102474399995278789984
Q ss_pred EECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEE---------------------------ECCCEEEEEE
Q ss_conf 9789939999889980887407998784799991799999999---------------------------7994999993
Q 001472 202 GSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG---------------------------FDDNLKVYSW 254 (1072)
Q Consensus 202 gS~DGtIrIWDl~tgk~i~~l~~h~~~VtsIafSPDGk~LasG---------------------------sdg~I~Iwdl 254 (1072)
++.+.+|++.+++.+..+..+ .....+.++|++..++.. ....+.+|++
T Consensus 162 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
T d1jmxb_ 162 ---GPDIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 237 (346)
T ss_dssp ---SSSEEEECTTTCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred ---CCCCEEEECCCCCEEEEEECC-CCCCCEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEEC
T ss_conf ---796269980699789999648-9866237712552899986499816765123111267325754047834999977
Q ss_pred CCCEEECCC--CCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEE
Q ss_conf 587221011--268870456994599999999869939999847993244312789999987319999799994222999
Q 001472 255 EPVICHDSV--DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVG 332 (1072)
Q Consensus 255 ~s~~~~~~i--~~~~s~is~l~spDGklLasgs~DGsIrIWDids~~l~~~~~~~~~~~~s~ItsVaFSPDGs~lLa~Vl 332 (1072)
......... ..........+++++.+++... ++.|.+||...+...... .....+.+++|||||+ .+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~-----~~~~~~~~va~s~DG~-----~l 306 (346)
T d1jmxb_ 238 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAA-----NLDHTYYCVAFDKKGD-----KL 306 (346)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEE-----ECSSCCCEEEECSSSS-----CE
T ss_pred CCCCEEEEEEECCCCEEEEEEEECCCCEEEEEC-CCEEEEEECCCCCEEEEE-----CCCCCEEEEEECCCCC-----EE
T ss_conf 788368787631566068889717997899942-983899989999399997-----4999778999968999-----99
Q ss_pred EEECCCCCEEEEECCCCCCCEEE-EEEC
Q ss_conf 89616760689635776440699-7636
Q 001472 333 IIGRSTSGFRSTSPDYETKDIKT-IYVD 359 (1072)
Q Consensus 333 aiG~stG~~r~ivpD~es~eIv~-i~iD 359 (1072)
+++...|. +.+.|.++.+... +...
T Consensus 307 ~v~~~d~~--v~v~D~~t~~~i~~i~~p 332 (346)
T d1jmxb_ 307 YLGGTFND--LAVFNPDTLEKVKNIKLP 332 (346)
T ss_dssp EEESBSSE--EEEEETTTTEEEEEEECS
T ss_pred EEEECCCC--EEEEECCCCCEEEEEECC
T ss_conf 99948992--999999658797999889
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.84 E-value=6.6e-16 Score=121.88 Aligned_cols=294 Identities=9% Similarity=-0.086 Sum_probs=197.7
Q ss_pred ECCCCCEEEEEECCCCCEEEEEE-----CCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEC---------
Q ss_conf 07998947999938999999998-----6991999986999069998078988279999379989999968---------
Q 001472 55 CGLSSPVDSVAFDSAEVLVLAGA-----STGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM--------- 120 (1072)
Q Consensus 55 ~~hs~~ItsLafSPdg~~LatGS-----~DGsI~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~--------- 120 (1072)
..+..++..++++|+++.+++.. ..+.+.+||..+++.+..+..+... .+.|+|||+++++++.
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCCCC
T ss_conf 56789865630189997899973422578765999989999799999579886--0798689998999960577532124
Q ss_pred -CCEEEEEECCCCEEEEEEECCCCCE-------EEEEECCCCCEEEEEE--CCCEEEEEECCCCCEEEEEEECCCCEEEE
Q ss_conf -9809999889990799981689874-------8999968999999996--69929999989991689953048865899
Q 001472 121 -DTNLKIWDIRKKGCIHTYKGHTRGI-------NTIRFTPDGRWVVSGG--FDNVVKVWDLTAGKLLHDFKFHEGHIRSI 190 (1072)
Q Consensus 121 -DGsI~IWDlrsgk~i~~l~~h~~~V-------tsIafSPDG~~LvTGS--~DGsI~IWDl~tgk~i~~l~~h~g~ItsL 190 (1072)
++.|.+||..+++.+..+..+.... ..+.|+++++.++... .++.+.+|+....+..... ....++
T Consensus 95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 170 (373)
T d2madh_ 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCY 170 (373)
T ss_pred CCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEE----CCCEEE
T ss_conf 5318999977789388897268851368516897089985899379999869874677623687289982----452069
Q ss_pred EECCCCCEE-EEEECCCEEEEEECCCCCEEEEECCC------CCCEEEEEEECCCCEEEEEECCCEEEEEECCCEEECCC
Q ss_conf 985999699-99978993999988998088740799------87847999917999999997994999993587221011
Q 001472 191 DFHPLEFLL-ATGSADRTVKFWDLETFELIGSTRPE------VTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSV 263 (1072)
Q Consensus 191 afSPdg~lL-aTgS~DGtIrIWDl~tgk~i~~l~~h------~~~VtsIafSPDGk~LasGsdg~I~Iwdl~s~~~~~~i 263 (1072)
.++|++..+ ++.+.|+.+.+|+...+......... ......+.+++++.+++.+.++.+.+|+..........
T Consensus 171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 250 (373)
T d2madh_ 171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKA 250 (373)
T ss_pred EEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEE
T ss_conf 99628991999994799399997477426678863003667530434588789942999258965999976899078977
Q ss_pred CC----------C---CCEEEEEEECCC----------CEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEE
Q ss_conf 26----------8---870456994599----------999999869939999847993244312789999987319999
Q 001472 264 DM----------G---WSTLGDLCINDG----------KLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKF 320 (1072)
Q Consensus 264 ~~----------~---~s~is~l~spDG----------klLasgs~DGsIrIWDids~~l~~~~~~~~~~~~s~ItsVaF 320 (1072)
.. . .......+.+++ ..++....++.+.+||...+...... .+...+..++|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~-----~~~~~~~~~a~ 325 (373)
T d2madh_ 251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI-----SLGHDVDAISV 325 (373)
T ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEE-----CCCCCEEEEEE
T ss_conf 6305647578664136741335771499759995488824786258986999989999698986-----68998258999
Q ss_pred CCCCCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCCCC
Q ss_conf 7999942229998961676068963577644069976368999420
Q 001472 321 NPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDSTGGKPV 366 (1072)
Q Consensus 321 SPDGs~lLa~VlaiG~stG~~r~ivpD~es~eIv~i~iDs~gGepv 366 (1072)
+|||+.++. +.+...+ .+.+.|..+++++..... .|+..
T Consensus 326 spDG~~~l~---vt~~~d~--~v~v~D~~tg~~~~~~~~--~g~~P 364 (373)
T d2madh_ 326 AQDGGPDLY---ALSAGTE--VLHIYDAGAGDQDQSTVE--LGSGP 364 (373)
T ss_pred CCCCCEEEE---EEECCCC--EEEEEECCCCCEEEEECC--CCCCC
T ss_conf 989998999---9967999--299999999989999888--89898
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=5.4e-17 Score=129.39 Aligned_cols=296 Identities=10% Similarity=-0.065 Sum_probs=193.4
Q ss_pred CEEEEEEECCCCCEEEEEE-----CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCE
Q ss_conf 8699999118993999997-----899099998799942799507998947999938999999998----------6991
Q 001472 17 NVNCISIGKKACRFLITGG-----DDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGA----------STGV 81 (1072)
Q Consensus 17 ~VtsIafSPdg~~lLaTGs-----~DGtI~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS----------~DGs 81 (1072)
++.-.+.+|++. .+++.. .+..|.+||..+++.+..+..+..+ .++|+|+|++|++.+ .++.
T Consensus 3 p~~~~a~spdg~-~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~ 79 (355)
T d2bbkh_ 3 PRILEAPAPDAR-RVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDY 79 (355)
T ss_dssp CCBCCCCCCCTT-EEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred CCEEEEECCCCC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEECCCCCCCCCCCCCE
T ss_conf 717476589999-999982664777671999999999499999899998--56994899999999677764201589998
Q ss_pred EEEEECCCCEEEEEEECCCC-------CEEEEEECCCCCEEEEEEC--CCEEEEEECCCCEEEEEEECCCCC-------E
Q ss_conf 99998699906999807898-------8279999379989999968--980999988999079998168987-------4
Q 001472 82 IKLWDLEESKMVRTLTGHKS-------NCTAVEFHPFGEFFASGCM--DTNLKIWDIRKKGCIHTYKGHTRG-------I 145 (1072)
Q Consensus 82 I~IWDl~tgk~i~tl~~h~~-------~VtsIafSPdgk~LaSgs~--DGsI~IWDlrsgk~i~~l~~h~~~-------V 145 (1072)
|.+||..+++....+..+.. ....+.|++++++++++.. +..+.+|+..++..+..+..+... .
T Consensus 80 v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T d2bbkh_ 80 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPD 159 (355)
T ss_dssp EEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETT
T ss_pred EEEEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCC
T ss_conf 99999999979889805886403117987349993388715773279882045430578837667705874047306996
Q ss_pred EEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE--E
Q ss_conf 8999968999999996-699299999899916899530488658999859996999997899399998899808874--0
Q 001472 146 NTIRFTPDGRWVVSGG-FDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS--T 222 (1072)
Q Consensus 146 tsIafSPDG~~LvTGS-~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tgk~i~~--l 222 (1072)
..+.+++++..++... .++.+.+++...... .+...+....+.+++..++.++.++.+++|++..+..... .
T Consensus 160 ~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 234 (355)
T d2bbkh_ 160 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV 234 (355)
T ss_dssp EEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCE
T ss_pred CEEEECCCCCEEEEEECCCCEEEEEECCCCCC-----EECCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf 36999389998999834787379996243330-----0011061021538997388746998299996589907998445
Q ss_pred CCC----------CCCEEEEEEECCCCEEEEEEC-----------CCEEEEEECCCEEECCCCCCCCEEEEEEECCCC--
Q ss_conf 799----------878479999179999999979-----------949999935872210112688704569945999--
Q 001472 223 RPE----------VTGVHAITFHPDGRTLFSGFD-----------DNLKVYSWEPVICHDSVDMGWSTLGDLCINDGK-- 279 (1072)
Q Consensus 223 ~~h----------~~~VtsIafSPDGk~LasGsd-----------g~I~Iwdl~s~~~~~~i~~~~s~is~l~spDGk-- 279 (1072)
..+ ......+++++++..++.... +.+.+|+.........+..+..+....+++||+
T Consensus 235 ~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~ 314 (355)
T d2bbkh_ 235 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPL 314 (355)
T ss_dssp ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCE
T ss_pred CCCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEE
T ss_conf 78441268543303510899980799767887406871265179975999867888498996689987799992899969
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCC
Q ss_conf 999998699399998479932443127899999873199997999
Q 001472 280 LLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPG 324 (1072)
Q Consensus 280 lLasgs~DGsIrIWDids~~l~~~~~~~~~~~~s~ItsVaFSPDG 324 (1072)
+++++..|+.|.+||...+...... ..+......+.+.++|
T Consensus 315 l~v~~~~d~~i~v~D~~tg~~~~~i----~~~G~~p~~i~~~d~~ 355 (355)
T d2bbkh_ 315 LYALSTGDKTLYIHDAESGEELRSV----NQLGHGPQVITTADMG 355 (355)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEE----CCCCSSCCEEECCCCC
T ss_pred EEEEECCCCEEEEEECCCCCEEEEE----ECCCCCCCEEEECCCC
T ss_conf 9999789998999999999899999----2869796589969999
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.79 E-value=2.1e-15 Score=118.38 Aligned_cols=304 Identities=10% Similarity=0.083 Sum_probs=177.9
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC-----CCCCEEEEEECCCCCEEEEEEC---------CCEEEE
Q ss_conf 99999118993999997899099998799942799507-----9989479999389999999986---------991999
Q 001472 19 NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCG-----LSSPVDSVAFDSAEVLVLAGAS---------TGVIKL 84 (1072)
Q Consensus 19 tsIafSPdg~~lLaTGs~DGtI~IWDi~t~~~i~sl~~-----hs~~ItsLafSPdg~~LatGS~---------DGsI~I 84 (1072)
..+.|.+++ .+++. .|+.+.+|++.+++....+.. +...|.++.|+||+++|+.++. ++.+.+
T Consensus 20 ~~~~W~~d~-~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l 96 (470)
T d2bgra1 20 YSLRWISDH-EYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (470)
T ss_dssp CCCEECSSS-EEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred CCCEECCCC-EEEEE--CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEE
T ss_conf 578968999-79997--599499998899978999701564431676540599898897999977710001046734999
Q ss_pred EECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECC------------------CCCEE
Q ss_conf 986999069998078988279999379989999968980999988999079998168------------------98748
Q 001472 85 WDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGH------------------TRGIN 146 (1072)
Q Consensus 85 WDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~l~~h------------------~~~Vt 146 (1072)
||+.+++. ..+..+...+..+.|+|||++++.. .++.+++|+...+......... .+...
T Consensus 97 ~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~ 174 (470)
T d2bgra1 97 YDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (470)
T ss_dssp EETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred EECCCCCC-CCCCCCCCCCCCCCCCCCCCEEEEE-ECCCCEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCC
T ss_conf 98988851-3124687423101014676413575-146413798899946532101477740535432011210047765
Q ss_pred EEEECCCCCEEEEEECCCE-EEEEE-----------------------------------CCCCCEEEEEE---------
Q ss_conf 9999689999999966992-99999-----------------------------------89991689953---------
Q 001472 147 TIRFTPDGRWVVSGGFDNV-VKVWD-----------------------------------LTAGKLLHDFK--------- 181 (1072)
Q Consensus 147 sIafSPDG~~LvTGS~DGs-I~IWD-----------------------------------l~tgk~i~~l~--------- 181 (1072)
.+.|+|||++|++...|.. +..|. +..+.......
T Consensus 175 ~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 254 (470)
T d2bgra1 175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS 254 (470)
T ss_dssp CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHH
T ss_pred CCEECCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCC
T ss_conf 30799998722026863776706998766047778871354036654546886257999988861455203322478633
Q ss_pred --ECCCCEEEEEECCCCCEEEEEE-CCC-----EEEEEECCCCCEEEEEC------CCCC-----CEEEEEEECCCC--E
Q ss_conf --0488658999859996999997-899-----39999889980887407------9987-----847999917999--9
Q 001472 182 --FHEGHIRSIDFHPLEFLLATGS-ADR-----TVKFWDLETFELIGSTR------PEVT-----GVHAITFHPDGR--T 240 (1072)
Q Consensus 182 --~h~g~ItsLafSPdg~lLaTgS-~DG-----tIrIWDl~tgk~i~~l~------~h~~-----~VtsIafSPDGk--~ 240 (1072)
.....+..+.|.+++.+++... ..+ .+..+|..++....... .... ......|.+++. +
T Consensus 255 ~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 334 (470)
T d2bgra1 255 MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFY 334 (470)
T ss_dssp HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEE
T ss_pred CCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCEEECCCCCCCEEEECCCCCE
T ss_conf 47898667788876878334787304688159999996188894789998751466214335313577724542378847
Q ss_pred EEEEE-CCC--EEEEEECCCEEECCCCCCCCEEEEEEECCCCEE-EEEECC----CEEEEEEC--CCCCEEEEECCCCCC
Q ss_conf 99997-994--999993587221011268870456994599999-999869----93999984--799324431278999
Q 001472 241 LFSGF-DDN--LKVYSWEPVICHDSVDMGWSTLGDLCINDGKLL-GCSFYR----NSVGIWVA--DVSHVEPYGVGAPEP 310 (1072)
Q Consensus 241 LasGs-dg~--I~Iwdl~s~~~~~~i~~~~s~is~l~spDGklL-asgs~D----GsIrIWDi--ds~~l~~~~~~~~~~ 310 (1072)
++.+. ++. |++|+.............+.+... ...+++.+ +++..+ +.-+||.+ +.+............
T Consensus 335 ~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~ 413 (470)
T d2bgra1 335 KIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNP 413 (470)
T ss_dssp EEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTST
T ss_pred EEEECCCCCCEEEEEECCCCCEEEECCCCEEEEEE-EEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEECCCCCC
T ss_conf 98743675764599952687304511698048787-89779999999956899835179999988899860570354358
Q ss_pred CCCCEEEEEECCCCCCCC
Q ss_conf 998731999979999422
Q 001472 311 DQSICTEVKFNPPGSHSL 328 (1072)
Q Consensus 311 ~~s~ItsVaFSPDGs~lL 328 (1072)
+...+..++|||||+.++
T Consensus 414 ~~~~~~s~~fSpdgky~~ 431 (470)
T d2bgra1 414 ERCQYYSVSFSKEAKYYQ 431 (470)
T ss_dssp TTBCBEEEEECTTSSEEE
T ss_pred CCCCEEEEEECCCCCEEE
T ss_conf 889879999998999999
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.73 E-value=2.8e-14 Score=110.66 Aligned_cols=289 Identities=11% Similarity=-0.059 Sum_probs=181.9
Q ss_pred CEEEEEECCCCCEEEEEE-----CCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCEE
Q ss_conf 947999938999999998-----699199998699906999807898827999937998999996----------89809
Q 001472 60 PVDSVAFDSAEVLVLAGA-----STGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGC----------MDTNL 124 (1072)
Q Consensus 60 ~ItsLafSPdg~~LatGS-----~DGsI~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs----------~DGsI 124 (1072)
++...+.+|+++.+++.. .++.+.+||..+++.+..+..+... .++|+|||++|++.+ .++.|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEECCCCCCCCCCCCCEE
T ss_conf 717476589999999982664777671999999999499999899998--569948999999996777642015899989
Q ss_pred EEEECCCCEEEEEEECCC-------CCEEEEEECCCCCEEEEEE--CCCEEEEEECCCCCEEEEEEECCCC-------EE
Q ss_conf 999889990799981689-------8748999968999999996--6992999998999168995304886-------58
Q 001472 125 KIWDIRKKGCIHTYKGHT-------RGINTIRFTPDGRWVVSGG--FDNVVKVWDLTAGKLLHDFKFHEGH-------IR 188 (1072)
Q Consensus 125 ~IWDlrsgk~i~~l~~h~-------~~VtsIafSPDG~~LvTGS--~DGsI~IWDl~tgk~i~~l~~h~g~-------It 188 (1072)
.+||..+++.+..+..+. .....+.|++++++++++. .+..+.+|+..+++.+..+..+... ..
T Consensus 81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d2bbkh_ 81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT 160 (355)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred EEEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCC
T ss_conf 99999999798898058864031179873499933887157732798820454305788376677058740473069963
Q ss_pred EEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCEEECCC---
Q ss_conf 999859996999997-899399998899808874079987847999917999999997-994999993587221011---
Q 001472 189 SIDFHPLEFLLATGS-ADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSV--- 263 (1072)
Q Consensus 189 sLafSPdg~lLaTgS-~DGtIrIWDl~tgk~i~~l~~h~~~VtsIafSPDGk~LasGs-dg~I~Iwdl~s~~~~~~i--- 263 (1072)
.+.+++++..++... .++.+.+++...... .+...+....+.+++..++.+. ++.+++|++.........
T Consensus 161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 235 (355)
T d2bbkh_ 161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVE 235 (355)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEE
T ss_pred EEEECCCCCEEEEEECCCCEEEEEECCCCCC-----EECCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCC
T ss_conf 6999389998999834787379996243330-----00110610215389973887469982999965899079984457
Q ss_pred -------CCC---CCEEEEEEECCCCEEEEEECC----------CEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCC
Q ss_conf -------268---870456994599999999869----------939999847993244312789999987319999799
Q 001472 264 -------DMG---WSTLGDLCINDGKLLGCSFYR----------NSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPP 323 (1072)
Q Consensus 264 -------~~~---~s~is~l~spDGklLasgs~D----------GsIrIWDids~~l~~~~~~~~~~~~s~ItsVaFSPD 323 (1072)
... .......+.+++..++....+ ..|.+||.......... .....+.+++|+||
T Consensus 236 ~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~-----~~~~~~~~~a~spD 310 (355)
T d2bbkh_ 236 ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF-----EMGHEIDSINVSQD 310 (355)
T ss_dssp SSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE-----EEEEEECEEEECCS
T ss_pred CCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEE-----CCCCCEEEEEECCC
T ss_conf 8441268543303510899980799767887406871265179975999867888498996-----68998779999289
Q ss_pred CCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCCCC
Q ss_conf 9942229998961676068963577644069976368999420
Q 001472 324 GSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDSTGGKPV 366 (1072)
Q Consensus 324 Gs~lLa~VlaiG~stG~~r~ivpD~es~eIv~i~iDs~gGepv 366 (1072)
|+.++. +.+...+ .+.+.|.+++++...... .|..|.
T Consensus 311 G~~~l~---v~~~~d~--~i~v~D~~tg~~~~~i~~-~G~~p~ 347 (355)
T d2bbkh_ 311 EKPLLY---ALSTGDK--TLYIHDAESGEELRSVNQ-LGHGPQ 347 (355)
T ss_dssp SSCEEE---EEETTTT--EEEEEETTTCCEEEEECC-CCSSCC
T ss_pred CCEEEE---EEECCCC--EEEEEECCCCCEEEEEEC-CCCCCC
T ss_conf 996999---9978999--899999999989999928-697965
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.70 E-value=3.9e-14 Score=109.67 Aligned_cols=283 Identities=9% Similarity=-0.073 Sum_probs=183.3
Q ss_pred CCCCCEEEEEEECCCCCEEEE--EECCCE--EEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEE----------C
Q ss_conf 479986999991189939999--978990--99998799942799507998947999938999999998----------6
Q 001472 13 AHSANVNCISIGKKACRFLIT--GGDDQK--VNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGA----------S 78 (1072)
Q Consensus 13 gHsg~VtsIafSPdg~~lLaT--Gs~DGt--I~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS----------~ 78 (1072)
.+.+....++..+++....++ ...+|. +.+||..+++.+..+..+..+ .++|+|+|+.|++.+ .
T Consensus 17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~ 94 (368)
T d1mdah_ 17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKR 94 (368)
T ss_dssp CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCC
T ss_conf 5679866645589876126972045788621799708998377888578777--51398999889997556764010356
Q ss_pred CCEEEEEECCCCEEEEEEECCCC-------CEEEEEECCCCCEEEEEE-CCCEEEEEECCCCEEEEEEECCCCCEEEEEE
Q ss_conf 99199998699906999807898-------827999937998999996-8980999988999079998168987489999
Q 001472 79 TGVIKLWDLEESKMVRTLTGHKS-------NCTAVEFHPFGEFFASGC-MDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150 (1072)
Q Consensus 79 DGsI~IWDl~tgk~i~tl~~h~~-------~VtsIafSPdgk~LaSgs-~DGsI~IWDlrsgk~i~~l~~h~~~VtsIaf 150 (1072)
++.|.+||..+++.+..+..+.. ....+.|+|||++++++. .++.+.+||+.+++....+..+......
T Consensus 95 d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~--- 171 (368)
T d1mdah_ 95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH--- 171 (368)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCE---
T ss_pred CCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEC---
T ss_conf 78699998999938306437854210246886405887899899999689985999989989386786046752374---
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEE------EECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC
Q ss_conf 689999999966992999998999168995------30488658999859996999997899399998899808874079
Q 001472 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDF------KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP 224 (1072)
Q Consensus 151 SPDG~~LvTGS~DGsI~IWDl~tgk~i~~l------~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tgk~i~~l~~ 224 (1072)
......++..+.||.+.+|++......... ..+...+....+.+++..+... ++.+++++............
T Consensus 172 ~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~ 249 (368)
T d1mdah_ 172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAI 249 (368)
T ss_dssp EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCC
T ss_pred CCCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCCCEEEEEC--CCCEEEEEECCCCEEEEEEC
T ss_conf 6998239999489988999826896266653031113566646601015586899934--89779996069936997602
Q ss_pred C------------CCCEEEEEEECCCCEEEEEEC-C---------CEEEEEECCCEEECCCCCCCCEEEEEEECCCC-E-
Q ss_conf 9------------878479999179999999979-9---------49999935872210112688704569945999-9-
Q 001472 225 E------------VTGVHAITFHPDGRTLFSGFD-D---------NLKVYSWEPVICHDSVDMGWSTLGDLCINDGK-L- 280 (1072)
Q Consensus 225 h------------~~~VtsIafSPDGk~LasGsd-g---------~I~Iwdl~s~~~~~~i~~~~s~is~l~spDGk-l- 280 (1072)
. ......+++++++..+++... + .+.+||....+....+..+..+....+++||+ +
T Consensus 250 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~l 329 (368)
T d1mdah_ 250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN 329 (368)
T ss_dssp CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEE
T ss_pred CCCCCEEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEE
T ss_conf 46543045540127883568871799879998358973340588649999899994868955899651799998999899
Q ss_pred EEEEECCCEEEEEECCCCCEEE
Q ss_conf 9999869939999847993244
Q 001472 281 LGCSFYRNSVGIWVADVSHVEP 302 (1072)
Q Consensus 281 Lasgs~DGsIrIWDids~~l~~ 302 (1072)
++++..++.|.+||...++...
T Consensus 330 y~s~~~~~~v~v~D~~tgk~~~ 351 (368)
T d1mdah_ 330 YANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp EEEETTTTEEEEEESSSCEEEE
T ss_pred EEEECCCCEEEEEECCCCCEEE
T ss_conf 9994899969999899997999
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.62 E-value=9.5e-15 Score=113.86 Aligned_cols=300 Identities=9% Similarity=0.036 Sum_probs=196.5
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEECC------------------------------CCCEEEEEECCCCCEEEEEE-C
Q ss_conf 9999978990999987999427995079------------------------------98947999938999999998-6
Q 001472 30 FLITGGDDQKVNLWAIGKPTALMSLCGL------------------------------SSPVDSVAFDSAEVLVLAGA-S 78 (1072)
Q Consensus 30 lLaTGs~DGtI~IWDi~t~~~i~sl~~h------------------------------s~~ItsLafSPdg~~LatGS-~ 78 (1072)
.+++++.+|.|.+|++.+++.+..+... .-......++|||++|++.. .
T Consensus 13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~ 92 (441)
T d1qnia2 13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA 92 (441)
T ss_dssp EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEEECCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCEEEEECCC
T ss_conf 99968877748999678980799997675789879998886504783133225675567772210326888889997389
Q ss_pred CCEEEEEECCCCEEEEEEEC-CCCCEEEEEECCCCC--EEEEEECCC-----------------EEEEEECCCCEEEEEE
Q ss_conf 99199998699906999807-898827999937998--999996898-----------------0999988999079998
Q 001472 79 TGVIKLWDLEESKMVRTLTG-HKSNCTAVEFHPFGE--FFASGCMDT-----------------NLKIWDIRKKGCIHTY 138 (1072)
Q Consensus 79 DGsI~IWDl~tgk~i~tl~~-h~~~VtsIafSPdgk--~LaSgs~DG-----------------sI~IWDlrsgk~i~~l 138 (1072)
++.|.+||+.+++....+.. .......++|+|+++ |++..+.+. .+..+|..+......+
T Consensus 93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI 172 (441)
T d1qnia2 93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV 172 (441)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEE
T ss_conf 99799998877847557956788786434870569989999566775443676630014555323886637556064787
Q ss_pred ECCCCCEEEEEECCCCCEEEEEECCC-EEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 16898748999968999999996699-29999989991689953048865899985999699999789939999889980
Q 001472 139 KGHTRGINTIRFTPDGRWVVSGGFDN-VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE 217 (1072)
Q Consensus 139 ~~h~~~VtsIafSPDG~~LvTGS~DG-sI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tgk 217 (1072)
... .....+.|+|+|+++++.+.+. .+..++..+......+.... ....+.+.++|+++..+ .++.+.+++.....
T Consensus 173 ~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n-~p~~~~~~~dGk~~~v~-~~~v~vvd~~~~~~ 249 (441)
T d1qnia2 173 IVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFN-VERIAAAVKAGNFKTIG-DSKVPVVDGRGESE 249 (441)
T ss_dssp EES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEE-HHHHHHHHHTTCCBCCT-TCCCCEEECSSSCS
T ss_pred ECC-CCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECC-CCCEEEEECCCCEEEEC-CCCCEEEECCCCCC
T ss_conf 369-9865469879999899985178731898515712178999688-51107996699999969-99828998036870
Q ss_pred EEEEECCCCCCEEEEEEECCCCEEEEE--ECCCEEEEEECCCEE------------ECCCCCCCCEEEEEEECCCCEEEE
Q ss_conf 887407998784799991799999999--799499999358722------------101126887045699459999999
Q 001472 218 LIGSTRPEVTGVHAITFHPDGRTLFSG--FDDNLKVYSWEPVIC------------HDSVDMGWSTLGDLCINDGKLLGC 283 (1072)
Q Consensus 218 ~i~~l~~h~~~VtsIafSPDGk~LasG--sdg~I~Iwdl~s~~~------------~~~i~~~~s~is~l~spDGklLas 283 (1072)
.+..+... .....+.++|||++++++ .++.+.+|+++.... ......+..+....|.++|..+.+
T Consensus 250 v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts 328 (441)
T d1qnia2 250 FTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTT 328 (441)
T ss_dssp SEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEE
T ss_pred EEEEEECC-CCCCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEECCCCEEEEC
T ss_conf 68997179-88667268999878999077599389998322445752568842479960145547665226578559985
Q ss_pred EECCCEEEEEECCC-------CC----EEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCC
Q ss_conf 98699399998479-------93----244312789999987319999799994222999896167
Q 001472 284 SFYRNSVGIWVADV-------SH----VEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRST 338 (1072)
Q Consensus 284 gs~DGsIrIWDids-------~~----l~~~~~~~~~~~~s~ItsVaFSPDGs~lLa~VlaiG~st 338 (1072)
.+.|..|..|+++. .. ...+.+.-..+|...+.+..|+|||+ .++.+.--
T Consensus 329 ~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk-----~l~s~~k~ 389 (441)
T d1qnia2 329 LFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGK-----WLVVLSKF 389 (441)
T ss_dssp ETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCC-----EEEEEESC
T ss_pred CCCCCEEEEECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC-----EEEECCCC
T ss_conf 24431689723542213322677765686453266898775245422389884-----89965744
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.60 E-value=3.4e-13 Score=103.12 Aligned_cols=285 Identities=7% Similarity=-0.142 Sum_probs=175.0
Q ss_pred CCCCEEEEEECCCCCEEEEE---ECC--CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE----------CC
Q ss_conf 99894799993899999999---869--9199998699906999807898827999937998999996----------89
Q 001472 57 LSSPVDSVAFDSAEVLVLAG---AST--GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGC----------MD 121 (1072)
Q Consensus 57 hs~~ItsLafSPdg~~LatG---S~D--GsI~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs----------~D 121 (1072)
+.++...++..++++..+.. ..+ ..+.+||..+++.+..+..+... .+.|+|+|+++++.+ .+
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCC
T ss_conf 679866645589876126972045788621799708998377888578777--513989998899975567640103567
Q ss_pred CEEEEEECCCCEEEEEEECCCC-------CEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEEEEECCCCEEEEEEC
Q ss_conf 8099998899907999816898-------748999968999999996-69929999989991689953048865899985
Q 001472 122 TNLKIWDIRKKGCIHTYKGHTR-------GINTIRFTPDGRWVVSGG-FDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFH 193 (1072)
Q Consensus 122 GsI~IWDlrsgk~i~~l~~h~~-------~VtsIafSPDG~~LvTGS-~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafS 193 (1072)
+.|.+||..+++.+..+..+.. ....++|+|||++++++. .++.+.+||+.+++....+..+...... .
T Consensus 96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---~ 172 (368)
T d1mdah_ 96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH---P 172 (368)
T ss_dssp EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCE---E
T ss_pred CEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEC---C
T ss_conf 8699998999938306437854210246886405887899899999689985999989989386786046752374---6
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEE------ECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCEEECCC----
Q ss_conf 9996999997899399998899808874------079987847999917999999997994999993587221011----
Q 001472 194 PLEFLLATGSADRTVKFWDLETFELIGS------TRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSV---- 263 (1072)
Q Consensus 194 Pdg~lLaTgS~DGtIrIWDl~tgk~i~~------l~~h~~~VtsIafSPDGk~LasGsdg~I~Iwdl~s~~~~~~i---- 263 (1072)
.....++..+.||.+.+|++........ +..+...+....+.+++..+.. ..+.++++++.........
T Consensus 173 ~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~v~~~~~~~~~~~~~~~~~~ 251 (368)
T d1mdah_ 173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA-VASSILQGDIPAAGATMKAAIDG 251 (368)
T ss_dssp EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC-BSSCCEEEECCSSCCEEECCCCS
T ss_pred CCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCCCEEEEE-CCCCEEEEEECCCCEEEEEECCC
T ss_conf 99823999948998899982689626665303111356664660101558689993-48977999606993699760246
Q ss_pred ------CCCC---CEEEEEEECCCCEEEEEECC---------CEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCC
Q ss_conf ------2688---70456994599999999869---------93999984799324431278999998731999979999
Q 001472 264 ------DMGW---STLGDLCINDGKLLGCSFYR---------NSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1072)
Q Consensus 264 ------~~~~---s~is~l~spDGklLasgs~D---------GsIrIWDids~~l~~~~~~~~~~~~s~ItsVaFSPDGs 325 (1072)
...+ ......+.+++..++....+ ..|.+||...+...... .....+..++|+|||+
T Consensus 252 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~-----~~~~~~~~~a~spDG~ 326 (368)
T d1mdah_ 252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-----SNGHDSDAIIAAQDGA 326 (368)
T ss_dssp SCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC-----EEEEEECEEEECCSSS
T ss_pred CCCEEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEE-----CCCCCEEEEEECCCCC
T ss_conf 54304554012788356887179987999835897334058864999989999486895-----5899651799998999
Q ss_pred CCCEEEEEEECCCCCEEEEECCCCCCCEEEEE
Q ss_conf 42229998961676068963577644069976
Q 001472 326 HSLEKVGIIGRSTSGFRSTSPDYETKDIKTIY 357 (1072)
Q Consensus 326 ~lLa~VlaiG~stG~~r~ivpD~es~eIv~i~ 357 (1072)
..+ .+.+...+ .+.+.|..+++.....
T Consensus 327 ~~l---y~s~~~~~--~v~v~D~~tgk~~~~i 353 (368)
T d1mdah_ 327 SDN---YANSAGTE--VLDIYDAASDQDQSSV 353 (368)
T ss_dssp CEE---EEEETTTT--EEEEEESSSCEEEEEC
T ss_pred EEE---EEEECCCC--EEEEEECCCCCEEEEE
T ss_conf 899---99948999--6999989999799998
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.55 E-value=1.4e-11 Score=91.91 Aligned_cols=141 Identities=13% Similarity=0.074 Sum_probs=103.1
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEEC-----CCCCEEEEEECCCCCEEEEEEC---------CCEEEEE
Q ss_conf 7999938999999998699199998699906999807-----8988279999379989999968---------9809999
Q 001472 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG-----HKSNCTAVEFHPFGEFFASGCM---------DTNLKIW 127 (1072)
Q Consensus 62 tsLafSPdg~~LatGS~DGsI~IWDl~tgk~i~tl~~-----h~~~VtsIafSPdgk~LaSgs~---------DGsI~IW 127 (1072)
..+.|.+++.+++. .++.+.+||+.+++....+.. +...|.++.|+||+++|+.++. ++.+++|
T Consensus 20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~ 97 (470)
T d2bgra1 20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (470)
T ss_dssp CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCCEECCCCEEEEE--CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEE
T ss_conf 57896899979997--5994999988999789997015644316765405998988979999777100010467349999
Q ss_pred ECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEEC------------------CCCEEE
Q ss_conf 88999079998168987489999689999999966992999998999168995304------------------886589
Q 001472 128 DIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH------------------EGHIRS 189 (1072)
Q Consensus 128 Dlrsgk~i~~l~~h~~~VtsIafSPDG~~LvTGS~DGsI~IWDl~tgk~i~~l~~h------------------~g~Its 189 (1072)
|+.+++ +..+..+...+..+.|+|||++++... ++.+.+|+...++.......+ .+....
T Consensus 98 d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~ 175 (470)
T d2bgra1 98 DLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA 175 (470)
T ss_dssp ETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred ECCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEEE-CCCCEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCC
T ss_conf 898885-131246874231010146764135751-464137988999465321014777405354320112100477653
Q ss_pred EEECCCCCEEEEEECCC
Q ss_conf 99859996999997899
Q 001472 190 IDFHPLEFLLATGSADR 206 (1072)
Q Consensus 190 LafSPdg~lLaTgS~DG 206 (1072)
+.|+|||..|+....|.
T Consensus 176 ~~wSPDGk~ia~~~~d~ 192 (470)
T d2bgra1 176 LWWSPNGTFLAYAQFND 192 (470)
T ss_dssp EEECTTSSEEEEEEEEC
T ss_pred CEECCCCCCCCEEEECC
T ss_conf 07999987220268637
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.52 E-value=1.7e-09 Score=77.60 Aligned_cols=289 Identities=11% Similarity=0.056 Sum_probs=164.4
Q ss_pred EEEEEEC--CCEEEEEEC--CCCCEE--EEE-ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-CEEEEEE-ECCC
Q ss_conf 9999978--990999987--999427--995-07998947999938999999998699199998699-9069998-0789
Q 001472 30 FLITGGD--DQKVNLWAI--GKPTAL--MSL-CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE-SKMVRTL-TGHK 100 (1072)
Q Consensus 30 lLaTGs~--DGtI~IWDi--~t~~~i--~sl-~~hs~~ItsLafSPdg~~LatGS~DGsI~IWDl~t-gk~i~tl-~~h~ 100 (1072)
.|++|.. .+.|..+.+ +++... ... ......+..++|++++++|++... +.+..|.+.. +...... ....
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 82 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCEEEECCCCCEEEEEEC-CCEEEEEEECCCCEEEEEEECCC
T ss_conf 99999314999899999858889389845445168999777999489899999938-94789999089976987641289
Q ss_pred CCEEEEEECCCCCEEEEEE---CCCEEEEEECCCC-EE---------------EEEE-ECCCCCEEEEEECCCCCEEEEE
Q ss_conf 8827999937998999996---8980999988999-07---------------9998-1689874899996899999999
Q 001472 101 SNCTAVEFHPFGEFFASGC---MDTNLKIWDIRKK-GC---------------IHTY-KGHTRGINTIRFTPDGRWVVSG 160 (1072)
Q Consensus 101 ~~VtsIafSPdgk~LaSgs---~DGsI~IWDlrsg-k~---------------i~~l-~~h~~~VtsIafSPDG~~LvTG 160 (1072)
.....+.++++++.+++.. ..+.+..+.+... .. .... ......++++.|+|+|++++++
T Consensus 83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~ 162 (365)
T d1jofa_ 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCEEEEECCCCCEEEEE
T ss_conf 98678998789987999993279978998674578874206866403300476467556889811597888999989982
Q ss_pred EC-CCEEEEEECCCC-CEE--EEEE--ECCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEE--EE---E--C---
Q ss_conf 66-992999998999-168--9953--0488658999859996999997-8993999988998088--74---0--7---
Q 001472 161 GF-DNVVKVWDLTAG-KLL--HDFK--FHEGHIRSIDFHPLEFLLATGS-ADRTVKFWDLETFELI--GS---T--R--- 223 (1072)
Q Consensus 161 S~-DGsI~IWDl~tg-k~i--~~l~--~h~g~ItsLafSPdg~lLaTgS-~DGtIrIWDl~tgk~i--~~---l--~--- 223 (1072)
+. ...|.+|+.... ... .... ........+.|+|++.++++.. .++.|.+|++...... .. . .
T Consensus 163 d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~ 242 (365)
T d1jofa_ 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred ECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCCCC
T ss_conf 07998799997068871665251111278874089998899866999515899899999559875377873124024556
Q ss_pred ---------CCCCCEEEEEEECCCCEEEEEE--CCC-----EEEEEECCCEEE-------CCCCCCCCEEEEEEEC-CCC
Q ss_conf ---------9987847999917999999997--994-----999993587221-------0112688704569945-999
Q 001472 224 ---------PEVTGVHAITFHPDGRTLFSGF--DDN-----LKVYSWEPVICH-------DSVDMGWSTLGDLCIN-DGK 279 (1072)
Q Consensus 224 ---------~h~~~VtsIafSPDGk~LasGs--dg~-----I~Iwdl~s~~~~-------~~i~~~~s~is~l~sp-DGk 279 (1072)
........+.++|||++|+++. ++. +..|........ .....+..+....+.+ +|+
T Consensus 243 ~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~ 322 (365)
T d1jofa_ 243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE 322 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCCCC
T ss_conf 55666544443577631699899997899713578754227999985688714467676677767998647896489999
Q ss_pred EEEEEE-CCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEE
Q ss_conf 999998-69939999847993244312789999987319999
Q 001472 280 LLGCSF-YRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKF 320 (1072)
Q Consensus 280 lLasgs-~DGsIrIWDids~~l~~~~~~~~~~~~s~ItsVaF 320 (1072)
+|+++. .++.|.+|+++...+....... .+......++.|
T Consensus 323 ~l~va~~~s~~v~v~~~~~~~l~~~~~~~-vp~p~~~~~~~w 363 (365)
T d1jofa_ 323 WMAITDDQEGWLEIYRWKDEFLHRVARVR-IPEPGFGMNAIW 363 (365)
T ss_dssp EEEEECSSSCEEEEEEEETTEEEEEEEEE-CCSTTEEEEEEE
T ss_pred EEEEEECCCCEEEEEEEECCCCCEEEEEE-CCCCCCCEEEEE
T ss_conf 99999679994999998288672789998-899999768796
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=3.8e-10 Score=82.09 Aligned_cols=301 Identities=13% Similarity=0.086 Sum_probs=161.2
Q ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC---CCCEEEEEECCCCCEEEEEEC---------CCEEEEEECC
Q ss_conf 9991189939999978990999987999427995079---989479999389999999986---------9919999869
Q 001472 21 ISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGL---SSPVDSVAFDSAEVLVLAGAS---------TGVIKLWDLE 88 (1072)
Q Consensus 21 IafSPdg~~lLaTGs~DGtI~IWDi~t~~~i~sl~~h---s~~ItsLafSPdg~~LatGS~---------DGsI~IWDl~ 88 (1072)
..|.+++ .++. -..+|.|.+|++.++.....+... ...+....|+||+++++.... .+.+.++|+.
T Consensus 22 ~~W~~~~-~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~ 99 (465)
T d1xfda1 22 AKWISDT-EFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP 99 (465)
T ss_dssp CCBSSSS-CBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred CEEECCC-CEEE-EECCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECC
T ss_conf 7891798-4899-9289969999878998899872764444553213898988869999845100476033528999856
Q ss_pred CCEEEEEEE--CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECC-CC-----------------CEEEE
Q ss_conf 990699980--78988279999379989999968980999988999079998168-98-----------------74899
Q 001472 89 ESKMVRTLT--GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGH-TR-----------------GINTI 148 (1072)
Q Consensus 89 tgk~i~tl~--~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~l~~h-~~-----------------~VtsI 148 (1072)
++....... .....+....|+|+|+.++... ++.|++.+...+..++..... .. .-..+
T Consensus 100 ~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~ 178 (465)
T d1xfda1 100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH 178 (465)
T ss_dssp SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred CCCEEECCCCCCCCCCCCEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEECCCCCHHHHHHHCCCCCEE
T ss_conf 884564157667764311002426785699996-1329999548996589711267660443664310012303664348
Q ss_pred EECCCCCEEEEEECC-CE---------------------------------EEEEECCCCCEEEEEE------ECCCCEE
Q ss_conf 996899999999669-92---------------------------------9999989991689953------0488658
Q 001472 149 RFTPDGRWVVSGGFD-NV---------------------------------VKVWDLTAGKLLHDFK------FHEGHIR 188 (1072)
Q Consensus 149 afSPDG~~LvTGS~D-Gs---------------------------------I~IWDl~tgk~i~~l~------~h~g~It 188 (1072)
.|+|||++|+....| .. +.++|+..+....... .....+.
T Consensus 179 ~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~ 258 (465)
T d1xfda1 179 WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYIT 258 (465)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEE
T ss_pred EECCCCCEEEEEEECCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCEEE
T ss_conf 97798986899995366661464123445444313345302568889721379983689817899952576766663045
Q ss_pred EEEECCCCCEEEEEEC-C---CEEEEEECCCCCEEEEECCC-CCC----EEEEEEECCCCEEEE--EE----CCCEEEEE
Q ss_conf 9998599969999978-9---93999988998088740799-878----479999179999999--97----99499999
Q 001472 189 SIDFHPLEFLLATGSA-D---RTVKFWDLETFELIGSTRPE-VTG----VHAITFHPDGRTLFS--GF----DDNLKVYS 253 (1072)
Q Consensus 189 sLafSPdg~lLaTgS~-D---GtIrIWDl~tgk~i~~l~~h-~~~----VtsIafSPDGk~Las--Gs----dg~I~Iwd 253 (1072)
.+.|.+++.+++.... + ..+.++|..+++....+... .+. -....|+++|+.++. .+ .+.++.+.
T Consensus 259 ~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~ 338 (465)
T d1xfda1 259 MVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHIT 338 (465)
T ss_dssp EEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEE
T ss_pred EEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCEEECCCCCEEEEEEEEEECCCCCEEEEE
T ss_conf 66875799389999741003013799707999278778972785173567860574689805777765431667168998
Q ss_pred ECC-------CEEECCCCCCCCEEEEEEE-CCCCEEE-EEECC--CEEEEEECCC--CCEE-EEECCCCCCCCCCEEEEE
Q ss_conf 358-------7221011268870456994-5999999-99869--9399998479--9324-431278999998731999
Q 001472 254 WEP-------VICHDSVDMGWSTLGDLCI-NDGKLLG-CSFYR--NSVGIWVADV--SHVE-PYGVGAPEPDQSICTEVK 319 (1072)
Q Consensus 254 l~s-------~~~~~~i~~~~s~is~l~s-pDGklLa-sgs~D--GsIrIWDids--~~l~-~~~~~~~~~~~s~ItsVa 319 (1072)
+.. ..........|.+...+.+ .+++.+. ++..+ +.-++|.++. +... .+... ........++.
T Consensus 339 ~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~--~~~~~~~~~~~ 416 (465)
T d1xfda1 339 VSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD--LVENCTYFSAS 416 (465)
T ss_dssp EECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT--SSSSCCCCEEE
T ss_pred ECCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCCCEEECCC--CCCCCCEEEEE
T ss_conf 3156666788626982269921997789838999999999689998268999977899860553144--67889879999
Q ss_pred ECCCCCC
Q ss_conf 9799994
Q 001472 320 FNPPGSH 326 (1072)
Q Consensus 320 FSPDGs~ 326 (1072)
|||||+.
T Consensus 417 ~S~~~~y 423 (465)
T d1xfda1 417 FSHSMDF 423 (465)
T ss_dssp ECTTSSE
T ss_pred ECCCCCE
T ss_conf 9999999
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.45 E-value=1.8e-10 Score=84.29 Aligned_cols=250 Identities=10% Similarity=-0.000 Sum_probs=146.2
Q ss_pred CEEEEEECCC--CCEEEEEEECCCCCEEEE-EECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf 2489985479--986999991189939999-9789909999879994279950799894799993899999999869919
Q 001472 6 YKLQEFVAHS--ANVNCISIGKKACRFLIT-GGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVI 82 (1072)
Q Consensus 6 ~~Ik~L~gHs--g~VtsIafSPdg~~lLaT-Gs~DGtI~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI 82 (1072)
+.+.-+.++. .....++++++| +++++ .+..+.+..++...................+++++++..+++....+.+
T Consensus 2 ~~~~~~~~~~~~~~P~~vavd~dG-~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i 80 (260)
T d1rwia_ 2 QTVLPFTGIDFRLSPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVV 80 (260)
T ss_dssp EEECCCCSCCSCCCEEEEEECTTC-CEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEE
T ss_pred CEEEECCCCCCCCCCCEEEECCCC-CEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEECEE
T ss_conf 848731557776987889996999-9999971899889999389966897436986684089993899889863100003
Q ss_pred EEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 99986999069998078988279999379989999968980999988999079998168987489999689999999966
Q 001472 83 KLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF 162 (1072)
Q Consensus 83 ~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~LvTGS~ 162 (1072)
.+++-.+...+.... ......++++.++++++++-.....+..++...................+++.++++++++...
T Consensus 81 ~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~ 159 (260)
T d1rwia_ 81 TLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD 159 (260)
T ss_dssp EECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGG
T ss_pred EEEEECCCEEEEEEE-EEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCEEEECCC
T ss_conf 554211200000010-0000000024553205750335553211232222012232036677520545489988641025
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEE
Q ss_conf 99299999899916899530488658999859996999997899399998899808874079987847999917999999
Q 001472 163 DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242 (1072)
Q Consensus 163 DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tgk~i~~l~~h~~~VtsIafSPDGk~La 242 (1072)
++.|..++...................+++.++++++++....+.|..++...................++++++|.+++
T Consensus 160 ~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~v 239 (260)
T d1rwia_ 160 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYV 239 (260)
T ss_dssp GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEE
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCEEEEEEECCCCEEE
T ss_conf 64332223431001222101147876312310001343214899899996999769997069989817999908999999
Q ss_pred EEECCCEEEEEECCCE
Q ss_conf 9979949999935872
Q 001472 243 SGFDDNLKVYSWEPVI 258 (1072)
Q Consensus 243 sGsdg~I~Iwdl~s~~ 258 (1072)
+-..+. +|+.+.+..
T Consensus 240 ad~~~~-rI~~i~~~~ 254 (260)
T d1rwia_ 240 ADRGND-RVVKLTSLE 254 (260)
T ss_dssp EEGGGT-EEEEECCCG
T ss_pred EECCCC-EEEEEECCC
T ss_conf 979999-899995999
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.37 E-value=9.6e-09 Score=72.36 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=45.6
Q ss_pred CEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC--EEEE
Q ss_conf 86999991189939999978990999987999427995079989479999389999999986991999986999--0699
Q 001472 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES--KMVR 94 (1072)
Q Consensus 17 ~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~IWDl~tg--k~i~ 94 (1072)
.+..++++|+| +++++...++.|..|+.... ...+......+.+++|+++|+++++...++.+..|+.... ....
T Consensus 29 ~~e~iAv~pdG-~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~ 105 (302)
T d2p4oa1 29 FLENLASAPDG-TIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 105 (302)
T ss_dssp CEEEEEECTTS-CEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCCCEEECCCC-CEEEEECCCCEEEEEECCCC--EEEEECCCCCCCEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEE
T ss_conf 84787799998-89999688998999908998--8999717998536898677886998328953788871011110121
Q ss_pred EE-ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 98-078988279999379989999968980999988999
Q 001472 95 TL-TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK 132 (1072)
Q Consensus 95 tl-~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsg 132 (1072)
.. .........+.+.++++++++.+.++.++.++...+
T Consensus 106 ~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~ 144 (302)
T d2p4oa1 106 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 144 (302)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred CCCCCCCCCCCEEEECCCCCEEEECCCCCCCEEEECCCC
T ss_conf 023578632216677157978750356554102421687
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.36 E-value=8.4e-12 Score=93.50 Aligned_cols=222 Identities=9% Similarity=-0.008 Sum_probs=111.4
Q ss_pred EEEEECCCEEEEEECCCCEEEEEEEC------------------------------CCCCEEEEEECCCCCEEEEEE-CC
Q ss_conf 99998699199998699906999807------------------------------898827999937998999996-89
Q 001472 73 VLAGASTGVIKLWDLEESKMVRTLTG------------------------------HKSNCTAVEFHPFGEFFASGC-MD 121 (1072)
Q Consensus 73 LatGS~DGsI~IWDl~tgk~i~tl~~------------------------------h~~~VtsIafSPdgk~LaSgs-~D 121 (1072)
+++++.+|.|.+|++.+++.+..+.. |........+.|||+++++.. .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEECCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCEEEEECCCC
T ss_conf 99688777489996789807999976757898799988865047831332256755677722103268888899973899
Q ss_pred CEEEEEECCCCEEEEEEEC-CCCCEEEEEECCCCC--EEEEEECCC-----------------EEEEEECCCCCEEEEEE
Q ss_conf 8099998899907999816-898748999968999--999996699-----------------29999989991689953
Q 001472 122 TNLKIWDIRKKGCIHTYKG-HTRGINTIRFTPDGR--WVVSGGFDN-----------------VVKVWDLTAGKLLHDFK 181 (1072)
Q Consensus 122 GsI~IWDlrsgk~i~~l~~-h~~~VtsIafSPDG~--~LvTGS~DG-----------------sI~IWDl~tgk~i~~l~ 181 (1072)
+.|.+||+.+++....+.. ....+..++|+|+++ |++..+.+. .+..+|..+.+...++.
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~ 173 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI 173 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEE
T ss_conf 97999988778475579567887864348705699899995667754436766300145553238866375560647873
Q ss_pred ECCCCEEEEEECCCCCEEEEEECCCE-EEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCEEE
Q ss_conf 04886589998599969999978993-99998899808874079987847999917999999997994999993587221
Q 001472 182 FHEGHIRSIDFHPLEFLLATGSADRT-VKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICH 260 (1072)
Q Consensus 182 ~h~g~ItsLafSPdg~lLaTgS~DGt-IrIWDl~tgk~i~~l~~h~~~VtsIafSPDGk~LasGsdg~I~Iwdl~s~~~~ 260 (1072)
. .+....+.|+|+|.++++.+.+.. +..++..+......+... .....+.+.++|+++..+.++.+.++........
T Consensus 174 v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~-n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~ 251 (441)
T d1qnia2 174 V-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT 251 (441)
T ss_dssp E-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE-EHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred C-CCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEEC-CCCCEEEEECCCCEEEECCCCCEEEECCCCCCEE
T ss_conf 6-9986546987999989998517873189851571217899968-8511079966999999699982899803687068
Q ss_pred CCCCCCCCEEEEEEECCCCEEEEE-ECCCEEEEEECC
Q ss_conf 011268870456994599999999-869939999847
Q 001472 261 DSVDMGWSTLGDLCINDGKLLGCS-FYRNSVGIWVAD 296 (1072)
Q Consensus 261 ~~i~~~~s~is~l~spDGklLasg-s~DGsIrIWDid 296 (1072)
..+..+..+.+..++|||++++++ ..++.|.+||++
T Consensus 252 ~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~ 288 (441)
T d1qnia2 252 RYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAID 288 (441)
T ss_dssp EEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred EEEECCCCCCCCEECCCCCEEEEECCCCCCEEEEEEE
T ss_conf 9971798866726899987899907759938999832
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=2.5e-08 Score=69.46 Aligned_cols=233 Identities=12% Similarity=0.042 Sum_probs=112.5
Q ss_pred EEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC---CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEE
Q ss_conf 19999869990699980789882799993799899999689---809999889990799981689874899996899999
Q 001472 81 VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD---TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWV 157 (1072)
Q Consensus 81 sI~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~D---GsI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~L 157 (1072)
.|++.|.......... .+...+...+|+|||+.|+..... ..+++.+...+... .+..+........|+|+|..+
T Consensus 20 ~l~i~d~dG~~~~~l~-~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i 97 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKL 97 (269)
T ss_dssp EEEEEETTSCSCEEEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEE
T ss_pred EEEEECCCCCCCEEEE-CCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEE-EEEEEECCCCCCEECCCCCEE
T ss_conf 9999928999767986-58984260388789998999981526751344311367506-776420245430244889864
Q ss_pred EEEEC-CC--EEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEE-CCC--EEEEEECCCCCEEEEECCCCCCEEE
Q ss_conf 99966-99--299999899916899530488658999859996999997-899--3999988998088740799878479
Q 001472 158 VSGGF-DN--VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS-ADR--TVKFWDLETFELIGSTRPEVTGVHA 231 (1072)
Q Consensus 158 vTGS~-DG--sI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTgS-~DG--tIrIWDl~tgk~i~~l~~h~~~Vts 231 (1072)
+.... .+ .+..+............ .........+++++..++..+ .+| .|.++++...... ...........
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~ 175 (269)
T d2hqsa1 98 AFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD 175 (269)
T ss_dssp EEEECTTSSCEEEEEETTTCCEEECCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEE
T ss_pred EEEEECCCCCCEEECCCCCCCCEEEEE-CCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCE-EEECCCCCCCC
T ss_conf 676402786410000222122000010-1442114543455443300001268743865421331000-10001222234
Q ss_pred EEEECCCCEEEEEEC-C-CEEEEEEC--CCEEECCCCCCCCEEEEEEECCCCEEEEEEC---CCEEEEEECCCCCEEEEE
Q ss_conf 999179999999979-9-49999935--8722101126887045699459999999986---993999984799324431
Q 001472 232 ITFHPDGRTLFSGFD-D-NLKVYSWE--PVICHDSVDMGWSTLGDLCINDGKLLGCSFY---RNSVGIWVADVSHVEPYG 304 (1072)
Q Consensus 232 IafSPDGk~LasGsd-g-~I~Iwdl~--s~~~~~~i~~~~s~is~l~spDGklLasgs~---DGsIrIWDids~~l~~~~ 304 (1072)
..|+|+++.++.... + ...+|..+ .... .............|+|||+.|+..+. ...|.+|+++.+....+.
T Consensus 176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt 254 (269)
T d2hqsa1 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP 254 (269)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred CCCCCCCCEEEEEEECCCCEEEEEEECCCCCC-EEEECCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEE
T ss_conf 32234543057786058801256760356440-58506865445589899999999981799847999999999779985
Q ss_pred CCCCCCCCCCEEEEEECCC
Q ss_conf 2789999987319999799
Q 001472 305 VGAPEPDQSICTEVKFNPP 323 (1072)
Q Consensus 305 ~~~~~~~~s~ItsVaFSPD 323 (1072)
...+.+...+|||-
T Consensus 255 -----~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 255 -----ATDGQVKFPAWSPY 268 (269)
T ss_dssp -----CSSSEEEEEEECCC
T ss_pred -----CCCCCEEEEEECCC
T ss_conf -----79985883782898
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.34 E-value=2.8e-08 Score=69.13 Aligned_cols=246 Identities=12% Similarity=-0.010 Sum_probs=114.5
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC--EEEE
Q ss_conf 82799993799899999689809999889990799981689874899996899999999669929999989991--6899
Q 001472 102 NCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK--LLHD 179 (1072)
Q Consensus 102 ~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~LvTGS~DGsI~IWDl~tgk--~i~~ 179 (1072)
.+..+++.|+|+++++...++.|+.|+.. +. ...+......+.+++|.++|+++++...++.+..|+..... ....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~ 106 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 106 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CCCCEEECCCCCEEEEECCCCEEEEEECC-CC-EEEEECCCCCCCEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEEC
T ss_conf 84787799998899996889989999089-98-89997179985368986778869983289537888710111101210
Q ss_pred EE-ECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC----------CCCCCEEEEEEECCCCEEEEEE--C
Q ss_conf 53-048865899985999699999789939999889980887407----------9987847999917999999997--9
Q 001472 180 FK-FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR----------PEVTGVHAITFHPDGRTLFSGF--D 246 (1072)
Q Consensus 180 l~-~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tgk~i~~l~----------~h~~~VtsIafSPDGk~LasGs--d 246 (1072)
.. ........+.+.+++.++++.+.++.+..++........... ........+.++. ..++.+. .
T Consensus 107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~ 184 (302)
T d2p4oa1 107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEK 184 (302)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETTT
T ss_pred CCCCCCCCCCEEEECCCCCEEEECCCCCCCEEEECCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCC--CCEEEECCCC
T ss_conf 23578632216677157978750356554102421687303675188640143157632243201169--8304403788
Q ss_pred CCEEEEEECCCEEEC---CCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEE---
Q ss_conf 949999935872210---11268870456994599999999869939999847993244312789999987319999---
Q 001472 247 DNLKVYSWEPVICHD---SVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKF--- 320 (1072)
Q Consensus 247 g~I~Iwdl~s~~~~~---~i~~~~s~is~l~spDGklLasgs~DGsIrIWDids~~l~~~~~~~~~~~~s~ItsVaF--- 320 (1072)
+.++.++........ .......+-...+.++|.++++...++.|..|+.+.+....... .......++++|
T Consensus 185 ~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~---~~~~~~pt~vafg~~ 261 (302)
T d2p4oa1 185 MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQA---EQGVIGSTAVAFGQT 261 (302)
T ss_dssp TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECG---GGTCTTEEEEEECCS
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEEC---CCCCCCCEEEEECCC
T ss_conf 76986344333323453101589987523787999999997489918998789978999963---789888248997087
Q ss_pred CCCCCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEEEC
Q ss_conf 799994222999896167606896357764406997636
Q 001472 321 NPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVD 359 (1072)
Q Consensus 321 SPDGs~lLa~VlaiG~stG~~r~ivpD~es~eIv~i~iD 359 (1072)
+||++ .+.+....|...........+.++.+.++
T Consensus 262 ~~D~~-----~Lyvtt~~g~~~~~~~~~~~~~~~~~~~~ 295 (302)
T d2p4oa1 262 EGDCT-----AIYVVTNGGMFLPPPTGVVPANVVRLEVG 295 (302)
T ss_dssp TTTTT-----EEEEEECTTSSSCCTTCCCCEEEEEEECS
T ss_pred CCCCC-----EEEEECCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 88789-----89999889866777677578748999489
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.33 E-value=3e-08 Score=68.93 Aligned_cols=232 Identities=10% Similarity=0.077 Sum_probs=123.9
Q ss_pred EECCCCCEEEEEEECCCCCEEEEEEC-------CCEEEEEECCCCCEEEEEEC----CCCCEEEEEECCCCCEEEEEECC
Q ss_conf 85479986999991189939999978-------99099998799942799507----99894799993899999999869
Q 001472 11 FVAHSANVNCISIGKKACRFLITGGD-------DQKVNLWAIGKPTALMSLCG----LSSPVDSVAFDSAEVLVLAGAST 79 (1072)
Q Consensus 11 L~gHsg~VtsIafSPdg~~lLaTGs~-------DGtI~IWDi~t~~~i~sl~~----hs~~ItsLafSPdg~~LatGS~D 79 (1072)
+...-...-+++|.++| +++++... +|.|..|+..++........ .......+.|.++++.++++...
T Consensus 13 v~~~~~g~EGpa~d~dG-~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~ 91 (314)
T d1pjxa_ 13 VTEDIPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR 91 (314)
T ss_dssp EECCCTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT
T ss_pred EECCCCCCEEEEEECCC-CEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECC
T ss_conf 32599897173996999-99999875402345299999998999959999777655678853069990799989999779
Q ss_pred CEEEEEECCCCEEEEEEECCCC----CEEEEEECCCCCEEEEEEC---------------CCEEEEEECCCCEEEEEEEC
Q ss_conf 9199998699906999807898----8279999379989999968---------------98099998899907999816
Q 001472 80 GVIKLWDLEESKMVRTLTGHKS----NCTAVEFHPFGEFFASGCM---------------DTNLKIWDIRKKGCIHTYKG 140 (1072)
Q Consensus 80 GsI~IWDl~tgk~i~tl~~h~~----~VtsIafSPdgk~LaSgs~---------------DGsI~IWDlrsgk~i~~l~~ 140 (1072)
+.|..++............... ....+.+.++|.+.++... .|.|+.++.. ++......
T Consensus 92 ~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~- 169 (314)
T d1pjxa_ 92 LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT- 169 (314)
T ss_dssp TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-
T ss_pred CEEEEEECCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCEECCCCCEEEEEEEC-CCEEEEEC-
T ss_conf 8399994777479997334324545787278988899899914866754320110002688438999525-74037507-
Q ss_pred CCCCEEEEEECCCCC-----EEEEEECCCEEEEEECCCCCEEEE------EEE-CCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf 898748999968999-----999996699299999899916899------530-48865899985999699999789939
Q 001472 141 HTRGINTIRFTPDGR-----WVVSGGFDNVVKVWDLTAGKLLHD------FKF-HEGHIRSIDFHPLEFLLATGSADRTV 208 (1072)
Q Consensus 141 h~~~VtsIafSPDG~-----~LvTGS~DGsI~IWDl~tgk~i~~------l~~-h~g~ItsLafSPdg~lLaTgS~DGtI 208 (1072)
.......++|++++. ++++-+..+.|..|++.....+.. +.. ..+....+++..+|+++++....+.|
T Consensus 170 ~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I 249 (314)
T d1pjxa_ 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CCCEEEEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCEE
T ss_conf 85322136997887763037999860243117761167654301568997133566641025783478579998279999
Q ss_pred EEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE
Q ss_conf 9998899808874079987847999917999999997
Q 001472 209 KFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF 245 (1072)
Q Consensus 209 rIWDl~tgk~i~~l~~h~~~VtsIafSPDGk~LasGs 245 (1072)
.+||...+.....+........+++|.++++.|++..
T Consensus 250 ~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~ 286 (314)
T d1pjxa_ 250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEE
T ss_conf 9996999979999979999878999928989999998
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.31 E-value=3.8e-08 Score=68.24 Aligned_cols=274 Identities=12% Similarity=0.058 Sum_probs=136.6
Q ss_pred EEEEEEC--CCEEEEE--ECCCCEEE--EEE-ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC-EEEEEE-ECCC
Q ss_conf 9999986--9919999--86999069--998-078988279999379989999968980999988999-079998-1689
Q 001472 72 LVLAGAS--TGVIKLW--DLEESKMV--RTL-TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK-GCIHTY-KGHT 142 (1072)
Q Consensus 72 ~LatGS~--DGsI~IW--Dl~tgk~i--~tl-~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsg-k~i~~l-~~h~ 142 (1072)
.|++|+. .+.|+++ |.+++++. ... ......+..++|++++++|+++.. +.+..|.+... ...... ....
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 82 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCEEEECCCCCEEEEEEC-CCEEEEEEECCCCEEEEEEECCC
T ss_conf 99999314999899999858889389845445168999777999489899999938-94789999089976987641289
Q ss_pred CCEEEEEECCCCCEEEEEE---CCCEEEEEECCCC-------------CE---EEEEE-ECCCCEEEEEECCCCCEEEEE
Q ss_conf 8748999968999999996---6992999998999-------------16---89953-048865899985999699999
Q 001472 143 RGINTIRFTPDGRWVVSGG---FDNVVKVWDLTAG-------------KL---LHDFK-FHEGHIRSIDFHPLEFLLATG 202 (1072)
Q Consensus 143 ~~VtsIafSPDG~~LvTGS---~DGsI~IWDl~tg-------------k~---i~~l~-~h~g~ItsLafSPdg~lLaTg 202 (1072)
.....+.++++++.++... ..+.+..+.+... .. ..... .....+.++.|+|++++++++
T Consensus 83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~ 162 (365)
T d1jofa_ 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCEEEEECCCCCEEEEE
T ss_conf 98678998789987999993279978998674578874206866403300476467556889811597888999989982
Q ss_pred EC-CCEEEEEECCCC-CEE--EE--ECCCCCCEEEEEEECCCCEEEEEE--CCCEEEEEECCCEEECC-----C------
Q ss_conf 78-993999988998-088--74--079987847999917999999997--99499999358722101-----1------
Q 001472 203 SA-DRTVKFWDLETF-ELI--GS--TRPEVTGVHAITFHPDGRTLFSGF--DDNLKVYSWEPVICHDS-----V------ 263 (1072)
Q Consensus 203 S~-DGtIrIWDl~tg-k~i--~~--l~~h~~~VtsIafSPDGk~LasGs--dg~I~Iwdl~s~~~~~~-----i------ 263 (1072)
.. ...|.+|+.... ... .. ........+.++|+|+|+++++.. ++.+.+|+++....... .
T Consensus 163 d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~ 242 (365)
T d1jofa_ 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred ECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCCCC
T ss_conf 07998799997068871665251111278874089998899866999515899899999559875377873124024556
Q ss_pred ---------CCCCCEEEEEEECCCCEEEEEEC------CCEEEEEECCCCC-E-EEEECCCCCCCCCCEEEEEECC-CCC
Q ss_conf ---------26887045699459999999986------9939999847993-2-4431278999998731999979-999
Q 001472 264 ---------DMGWSTLGDLCINDGKLLGCSFY------RNSVGIWVADVSH-V-EPYGVGAPEPDQSICTEVKFNP-PGS 325 (1072)
Q Consensus 264 ---------~~~~s~is~l~spDGklLasgs~------DGsIrIWDids~~-l-~~~~~~~~~~~~s~ItsVaFSP-DGs 325 (1072)
..........+++||++|+++.. .+.|..|+++... + .................++|+| +|+
T Consensus 243 ~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~ 322 (365)
T d1jofa_ 243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE 322 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCCCC
T ss_conf 55666544443577631699899997899713578754227999985688714467676677767998647896489999
Q ss_pred CCCEEEEEEECCCCCEEEEECCCCC
Q ss_conf 4222999896167606896357764
Q 001472 326 HSLEKVGIIGRSTSGFRSTSPDYET 350 (1072)
Q Consensus 326 ~lLa~VlaiG~stG~~r~ivpD~es 350 (1072)
. +.+.+...+.+..+-.+-++
T Consensus 323 ~----l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 323 W----MAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp E----EEEECSSSCEEEEEEEETTE
T ss_pred E----EEEEECCCCEEEEEEEECCC
T ss_conf 9----99996799949999982886
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=4.4e-08 Score=67.76 Aligned_cols=220 Identities=11% Similarity=0.057 Sum_probs=104.7
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC---EEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEE
Q ss_conf 099998799942799507998947999938999999998699---19999869990699980789882799993799899
Q 001472 39 KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTG---VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFF 115 (1072)
Q Consensus 39 tI~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS~DG---sI~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~L 115 (1072)
.|.|.|....... .+......+...+|||||+.|+...... .+.+.+...+... .+..+........|+|+++.+
T Consensus 20 ~l~i~d~dG~~~~-~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i 97 (269)
T d2hqsa1 20 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKL 97 (269)
T ss_dssp EEEEEETTSCSCE-EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEE
T ss_pred EEEEECCCCCCCE-EEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEE-EEEEEECCCCCCEECCCCCEE
T ss_conf 9999928999767-98658984260388789998999981526751344311367506-776420245430244889864
Q ss_pred EEEEC-CC--EEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE-CCC--EEEEEECCCCCEEEEEEECCCCEEE
Q ss_conf 99968-98--099998899907999816898748999968999999996-699--2999998999168995304886589
Q 001472 116 ASGCM-DT--NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGG-FDN--VVKVWDLTAGKLLHDFKFHEGHIRS 189 (1072)
Q Consensus 116 aSgs~-DG--sI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~LvTGS-~DG--sI~IWDl~tgk~i~~l~~h~g~Its 189 (1072)
+.... ++ .+..+........... ..........+++++..++..+ .+| .|..+++..+... ...........
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~ 175 (269)
T d2hqsa1 98 AFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD 175 (269)
T ss_dssp EEEECTTSSCEEEEEETTTCCEEECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEE
T ss_pred EEEEECCCCCCEEECCCCCCCCEEEE-ECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCE-EEECCCCCCCC
T ss_conf 67640278641000022212200001-01442114543455443300001268743865421331000-10001222234
Q ss_pred EEECCCCCEEEEEECCC---EEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEEC--C--CEEEEEECCCEEECC
Q ss_conf 99859996999997899---3999988998088740799878479999179999999979--9--499999358722101
Q 001472 190 IDFHPLEFLLATGSADR---TVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFD--D--NLKVYSWEPVICHDS 262 (1072)
Q Consensus 190 LafSPdg~lLaTgS~DG---tIrIWDl~tgk~i~~l~~h~~~VtsIafSPDGk~LasGsd--g--~I~Iwdl~s~~~~~~ 262 (1072)
..|+|++..++..+.++ .+.+++...+.. .............|+|||++|+..+. + .+++++++.......
T Consensus 176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~l 253 (269)
T d2hqsa1 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL 253 (269)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEEC
T ss_pred CCCCCCCCEEEEEEECCCCEEEEEEECCCCCC--EEEECCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEE
T ss_conf 32234543057786058801256760356440--5850686544558989999999998179984799999999977998
Q ss_pred CC
Q ss_conf 12
Q 001472 263 VD 264 (1072)
Q Consensus 263 i~ 264 (1072)
..
T Consensus 254 t~ 255 (269)
T d2hqsa1 254 PA 255 (269)
T ss_dssp CC
T ss_pred EC
T ss_conf 57
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.24 E-value=3.6e-08 Score=68.36 Aligned_cols=234 Identities=9% Similarity=-0.026 Sum_probs=121.9
Q ss_pred CCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEE
Q ss_conf 8947999938999999998-699199998699906999807898827999937998999996898099998899907999
Q 001472 59 SPVDSVAFDSAEVLVLAGA-STGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHT 137 (1072)
Q Consensus 59 ~~ItsLafSPdg~~LatGS-~DGsI~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~ 137 (1072)
.....+++.++|+.+++.. ..+.+..++...................+++.+++..+++....+.+.+++-.....+..
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~ 93 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP 93 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred CCCCEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEECEEEEEEECCCEEEEE
T ss_conf 98788999699999999718998899993899668974369866840899938998898631000035542112000000
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 81689874899996899999999669929999989991689953048865899985999699999789939999889980
Q 001472 138 YKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE 217 (1072)
Q Consensus 138 l~~h~~~VtsIafSPDG~~LvTGS~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tgk 217 (1072)
.. .......+++.++++++++-..+..+..++...................+++.+++.++++...++.|..++.....
T Consensus 94 ~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~ 172 (260)
T d1rwia_ 94 FD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 172 (260)
T ss_dssp CC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred EE-EEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCE
T ss_conf 10-00000000245532057503355532112322220122320366775205454899886410256433222343100
Q ss_pred EEEEECCCCCCEEEEEEECCCCEEEEEECCC-EEEEEECCCEEECCCCCC-CCEEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 8874079987847999917999999997994-999993587221011268-870456994599999999869939999
Q 001472 218 LIGSTRPEVTGVHAITFHPDGRTLFSGFDDN-LKVYSWEPVICHDSVDMG-WSTLGDLCINDGKLLGCSFYRNSVGIW 293 (1072)
Q Consensus 218 ~i~~l~~h~~~VtsIafSPDGk~LasGsdg~-I~Iwdl~s~~~~~~i~~~-~s~is~l~spDGklLasgs~DGsIrIW 293 (1072)
..............++++++|.++++...++ +..++............. ..+....+.++|.++++-..++.|...
T Consensus 173 ~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i 250 (260)
T d1rwia_ 173 QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL 250 (260)
T ss_dssp EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred EEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCEEEEEEECCCCEEEEECCCCEEEEE
T ss_conf 122210114787631231000134321489989999699976999706998981799990899999997999989999
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.22 E-value=1.1e-07 Score=65.03 Aligned_cols=235 Identities=12% Similarity=0.199 Sum_probs=114.7
Q ss_pred CEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC------CCCCEEEEEECCCCC-EEEEEE-CCCEEEEEECC
Q ss_conf 8699999118993999997899099998799942799507------998947999938999-999998-69919999869
Q 001472 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCG------LSSPVDSVAFDSAEV-LVLAGA-STGVIKLWDLE 88 (1072)
Q Consensus 17 ~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~~~i~sl~~------hs~~ItsLafSPdg~-~LatGS-~DGsI~IWDl~ 88 (1072)
....+++++++ +++++-..++.|.+|+. .+..+..+.. .......+++..+.. .+++.. .++.|..++.
T Consensus 24 ~P~gvavd~dg-~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~- 100 (279)
T d1q7fa_ 24 EPSGVAVNAQN-DIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ- 100 (279)
T ss_dssp CEEEEEECTTC-CEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred CCCEEEECCCC-CEEEEECCCCEEEEEEC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC-
T ss_conf 90079994999-89999799898999969-9999998166578866422663000123445520000477531000002-
Q ss_pred CCEEEEEEE-CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEE--CCCCCEEEEEECCCCCEEEEEECCCE
Q ss_conf 990699980-789882799993799899999689809999889990799981--68987489999689999999966992
Q 001472 89 ESKMVRTLT-GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK--GHTRGINTIRFTPDGRWVVSGGFDNV 165 (1072)
Q Consensus 89 tgk~i~tl~-~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~l~--~h~~~VtsIafSPDG~~LvTGS~DGs 165 (1072)
.+.....+. ........+++.+++.++++....+.+.+++. .++.+..+. .+......+++.+++..+++....+.
T Consensus 101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~ 179 (279)
T d1q7fa_ 101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 179 (279)
T ss_dssp TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred CCCCEEECCCCCCCCCCEECCCCCCCEEEEEECCCEEEEECC-CCCEEECCCCCCCCCCCCEEEECCCEEEEEEECCCCC
T ss_conf 563024038886425420000147847999632632567626-8750100220010256624320120017862013551
Q ss_pred EEEEECCCCCEEEEEE--ECCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCEEEEEC--CCCCCEEEEEEECCCCE
Q ss_conf 9999989991689953--04886589998599969999978-9939999889980887407--99878479999179999
Q 001472 166 VKVWDLTAGKLLHDFK--FHEGHIRSIDFHPLEFLLATGSA-DRTVKFWDLETFELIGSTR--PEVTGVHAITFHPDGRT 240 (1072)
Q Consensus 166 I~IWDl~tgk~i~~l~--~h~g~ItsLafSPdg~lLaTgS~-DGtIrIWDl~tgk~i~~l~--~h~~~VtsIafSPDGk~ 240 (1072)
|.+|+. .++.+..+. +.......+++.++++++++-.. ++.|.+|+. .++.+..+. ........+++.++|.+
T Consensus 180 V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l 257 (279)
T d1q7fa_ 180 VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSV 257 (279)
T ss_dssp EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred EEEEEC-CCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECC-CCCEEEEEECCCCCCCEEEEEEECCCCE
T ss_conf 002304-79444530113211487623231478699997899808999999-9999999968888898837999089919
Q ss_pred EEEEECCCEEEEEECCC
Q ss_conf 99997994999993587
Q 001472 241 LFSGFDDNLKVYSWEPV 257 (1072)
Q Consensus 241 LasGsdg~I~Iwdl~s~ 257 (1072)
+++..+..|++|.+...
T Consensus 258 ~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 258 VLASKDYRLYIYRYVQL 274 (279)
T ss_dssp EEEETTTEEEEEECSCC
T ss_pred EEEECCCEEEEEEEEEE
T ss_conf 99918996999872203
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.04 E-value=6.7e-07 Score=59.58 Aligned_cols=57 Identities=2% Similarity=0.043 Sum_probs=22.4
Q ss_pred EEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEE
Q ss_conf 6999991189939999978990999987999427995079989479999389999999
Q 001472 18 VNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLA 75 (1072)
Q Consensus 18 VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~Lat 75 (1072)
+..++|.++| +++++-...+.|..|+.........+.........++|+++|+++++
T Consensus 42 lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va 98 (319)
T d2dg1a1 42 LEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVC 98 (319)
T ss_dssp EEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEE
T ss_pred CEECEECCCC-CEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEE
T ss_conf 4707899999-99999779999999989999599999489987038999999999999
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1.2e-06 Score=57.83 Aligned_cols=138 Identities=13% Similarity=0.120 Sum_probs=84.8
Q ss_pred EEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECC---CCCEEEEEECCCCCEEEEEEC---------CCEEEEEECCC
Q ss_conf 999389999999986991999986999069998078---988279999379989999968---------98099998899
Q 001472 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGH---KSNCTAVEFHPFGEFFASGCM---------DTNLKIWDIRK 131 (1072)
Q Consensus 64 LafSPdg~~LatGS~DGsI~IWDl~tgk~i~tl~~h---~~~VtsIafSPdgk~LaSgs~---------DGsI~IWDlrs 131 (1072)
..|.+++.+++. ..+|.|.+|++.+++....+... ...+....|+||+++++.... .+.+.+||+.+
T Consensus 22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~ 100 (465)
T d1xfda1 22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (465)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred CEEECCCCEEEE-ECCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCC
T ss_conf 789179848999-2899699998789988998727644445532138989888699998451004760335289998568
Q ss_pred CEEEEEEE--CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEE-CCCC-----------------EEEEE
Q ss_conf 90799981--6898748999968999999996699299999899916899530-4886-----------------58999
Q 001472 132 KGCIHTYK--GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF-HEGH-----------------IRSID 191 (1072)
Q Consensus 132 gk~i~~l~--~h~~~VtsIafSPDG~~LvTGS~DGsI~IWDl~tgk~i~~l~~-h~g~-----------------ItsLa 191 (1072)
+....... .....+....|+|||+.++... ++.|.+.+...+..++.... ..+. -..+.
T Consensus 101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~ 179 (465)
T d1xfda1 101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW 179 (465)
T ss_dssp CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred CCEEECCCCCCCCCCCCEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEECCCCCHHHHHHHCCCCCEEE
T ss_conf 84564157667764311002426785699996-13299995489965897112676604436643100123036643489
Q ss_pred ECCCCCEEEEEE
Q ss_conf 859996999997
Q 001472 192 FHPLEFLLATGS 203 (1072)
Q Consensus 192 fSPdg~lLaTgS 203 (1072)
|+|||..|+...
T Consensus 180 WSPDgk~iaf~~ 191 (465)
T d1xfda1 180 WSPDGTRLAYAA 191 (465)
T ss_dssp ECTTSSEEEEEE
T ss_pred ECCCCCEEEEEE
T ss_conf 779898689999
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.94 E-value=1.6e-06 Score=57.00 Aligned_cols=102 Identities=14% Similarity=0.078 Sum_probs=56.6
Q ss_pred CCCEEEEEECCCCCEEEEEEC-------CCEEEEEECCCCEEEEEEECC----CCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 989479999389999999986-------991999986999069998078----988279999379989999968980999
Q 001472 58 SSPVDSVAFDSAEVLVLAGAS-------TGVIKLWDLEESKMVRTLTGH----KSNCTAVEFHPFGEFFASGCMDTNLKI 126 (1072)
Q Consensus 58 s~~ItsLafSPdg~~LatGS~-------DGsI~IWDl~tgk~i~tl~~h----~~~VtsIafSPdgk~LaSgs~DGsI~I 126 (1072)
-.....++|.++|+++++... +|.|..||..++......... ...-..+.|.++++.++++...+.|..
T Consensus 17 ~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~ 96 (314)
T d1pjxa_ 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred CCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEE
T ss_conf 98971739969999999987540234529999999899995999977765567885306999079998999977983999
Q ss_pred EECCCCEEEEEEECCC----CCEEEEEECCCCCEEEE
Q ss_conf 9889990799981689----87489999689999999
Q 001472 127 WDIRKKGCIHTYKGHT----RGINTIRFTPDGRWVVS 159 (1072)
Q Consensus 127 WDlrsgk~i~~l~~h~----~~VtsIafSPDG~~LvT 159 (1072)
++.............. .....+.+.++|.+.++
T Consensus 97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvt 133 (314)
T d1pjxa_ 97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWIT 133 (314)
T ss_dssp EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEE
T ss_pred EECCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEEE
T ss_conf 9477747999733432454578727898889989991
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.91 E-value=2e-06 Score=56.36 Aligned_cols=231 Identities=13% Similarity=0.084 Sum_probs=95.5
Q ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEC----CCEEEEEECCCCEE
Q ss_conf 89479999389999999986991999986999069998078988279999379989999968----98099998899907
Q 001472 59 SPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM----DTNLKIWDIRKKGC 134 (1072)
Q Consensus 59 ~~ItsLafSPdg~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~----DGsI~IWDlrsgk~ 134 (1072)
..+..++|.++|+++++-...+.|..|+...+.....+.........++|.++|+++++... .+.+...+......
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred CCCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEE
T ss_conf 67470789999999999779999999989999599999489987038999999999999568973110499873899636
Q ss_pred EEEEEC--CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 999816--898748999968999999996699299999899916899530488658999859996999997899399998
Q 001472 135 IHTYKG--HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWD 212 (1072)
Q Consensus 135 i~~l~~--h~~~VtsIafSPDG~~LvTGS~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWD 212 (1072)
...... .......+.+.++|++.++....... ...+.+..++
T Consensus 120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~------------------------------------~~~g~v~~~~ 163 (319)
T d2dg1a1 120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYST------------------------------------NPLGGVYYVS 163 (319)
T ss_dssp EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTT------------------------------------BCCEEEEEEC
T ss_pred EEECCCCCCCCCCCCEEEEECCCEEECCCCCCCC------------------------------------CCCCEEEEEE
T ss_conf 4442677755587522677306532001354002------------------------------------5742157884
Q ss_pred CCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE--CCCEEEEEECCCEE---------ECCCCCCCCEEEEEEECCCCEE
Q ss_conf 899808874079987847999917999999997--99499999358722---------1011268870456994599999
Q 001472 213 LETFELIGSTRPEVTGVHAITFHPDGRTLFSGF--DDNLKVYSWEPVIC---------HDSVDMGWSTLGDLCINDGKLL 281 (1072)
Q Consensus 213 l~tgk~i~~l~~h~~~VtsIafSPDGk~LasGs--dg~I~Iwdl~s~~~---------~~~i~~~~s~is~l~spDGklL 281 (1072)
..... +..+.........++|+++++.|+++. .+.|+.|+++.... .........+-...+-.+|++.
T Consensus 164 ~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~ 242 (319)
T d2dg1a1 164 PDFRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLY 242 (319)
T ss_dssp TTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEE
T ss_pred CCCCE-EEEEEECCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEECCCCCEE
T ss_conf 16633-57886123301000101222127874046891479997699836202463333125776410364173899999
Q ss_pred EEEECCCEEEEEECCCCCEEEEECCC-CCCCCCCEEEEEECCCCCC
Q ss_conf 99986993999984799324431278-9999987319999799994
Q 001472 282 GCSFYRNSVGIWVADVSHVEPYGVGA-PEPDQSICTEVKFNPPGSH 326 (1072)
Q Consensus 282 asgs~DGsIrIWDids~~l~~~~~~~-~~~~~s~ItsVaFSPDGs~ 326 (1072)
++....+.|.+|+-+...+..+.+.. ...+...+++++|.|++..
T Consensus 243 Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~ 288 (319)
T d2dg1a1 243 VAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQ 288 (319)
T ss_dssp EEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCE
T ss_pred EEECCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCE
T ss_conf 9984899899997999598899688757786750466778079988
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.88 E-value=2.6e-06 Score=55.49 Aligned_cols=232 Identities=12% Similarity=0.152 Sum_probs=154.9
Q ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECC------CCCEEEEEECCCCC-EEEEE-ECCCEEEEEECC
Q ss_conf 89479999389999999986991999986999069998078------98827999937998-99999-689809999889
Q 001472 59 SPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGH------KSNCTAVEFHPFGE-FFASG-CMDTNLKIWDIR 130 (1072)
Q Consensus 59 ~~ItsLafSPdg~~LatGS~DGsI~IWDl~tgk~i~tl~~h------~~~VtsIafSPdgk-~LaSg-s~DGsI~IWDlr 130 (1072)
.....++++++++.+++-..++.|.+||.. ++.+..+... ...-..+.+..+.. ++++. +.++.|..++.
T Consensus 23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~- 100 (279)
T d1q7fa_ 23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ- 100 (279)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred CCCCEEEECCCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC-
T ss_conf 890079994999899997998989999699-999998166578866422663000123445520000477531000002-
Q ss_pred CCEEEEEEEC-CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE--ECCCCEEEEEECCCCCEEEEEECCCE
Q ss_conf 9907999816-89874899996899999999669929999989991689953--04886589998599969999978993
Q 001472 131 KKGCIHTYKG-HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK--FHEGHIRSIDFHPLEFLLATGSADRT 207 (1072)
Q Consensus 131 sgk~i~~l~~-h~~~VtsIafSPDG~~LvTGS~DGsI~IWDl~tgk~i~~l~--~h~g~ItsLafSPdg~lLaTgS~DGt 207 (1072)
.+.....+.. .......+++.+++.++++....+.+.+++. .++.+..+. .+......+++.++++++++....+.
T Consensus 101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~ 179 (279)
T d1q7fa_ 101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 179 (279)
T ss_dssp TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred CCCCEEECCCCCCCCCCEECCCCCCCEEEEEECCCEEEEECC-CCCEEECCCCCCCCCCCCEEEECCCEEEEEEECCCCC
T ss_conf 563024038886425420000147847999632632567626-8750100220010256624320120017862013551
Q ss_pred EEEEECCCCCEEEEECC--CCCCEEEEEEECCCCEEEEEEC-C-CEEEEEECCCEEECCCCC---CCCEEEEEEECCCCE
Q ss_conf 99998899808874079--9878479999179999999979-9-499999358722101126---887045699459999
Q 001472 208 VKFWDLETFELIGSTRP--EVTGVHAITFHPDGRTLFSGFD-D-NLKVYSWEPVICHDSVDM---GWSTLGDLCINDGKL 280 (1072)
Q Consensus 208 IrIWDl~tgk~i~~l~~--h~~~VtsIafSPDGk~LasGsd-g-~I~Iwdl~s~~~~~~i~~---~~s~is~l~spDGkl 280 (1072)
|++|+.. ++.+..+.. .......++++++|+++++-.. + .+.+|+-+ +.....+.. ...+...++.++|.+
T Consensus 180 V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~~~~p~~vav~~dG~l 257 (279)
T d1q7fa_ 180 VKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSV 257 (279)
T ss_dssp EEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred EEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCC-CCEEEEEECCCCCCCEEEEEEECCCCE
T ss_conf 0023047-94445301132114876232314786999978998089999999-999999968888898837999089919
Q ss_pred EEEEECCCEEEEEECC
Q ss_conf 9999869939999847
Q 001472 281 LGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 281 Lasgs~DGsIrIWDid 296 (1072)
++ +..++.|++|...
T Consensus 258 ~V-~~~n~~v~~fr~~ 272 (279)
T d1q7fa_ 258 VL-ASKDYRLYIYRYV 272 (279)
T ss_dssp EE-EETTTEEEEEECS
T ss_pred EE-EECCCEEEEEEEE
T ss_conf 99-9189969998722
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.73 E-value=7.5e-06 Score=52.35 Aligned_cols=93 Identities=15% Similarity=0.184 Sum_probs=40.9
Q ss_pred ECCC--CCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEC-C-----CEEEEEECCCCEEEEE
Q ss_conf 9389--999999986991999986999069998078988279999379989999968-9-----8099998899907999
Q 001472 66 FDSA--EVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM-D-----TNLKIWDIRKKGCIHT 137 (1072)
Q Consensus 66 fSPd--g~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~-D-----GsI~IWDlrsgk~i~~ 137 (1072)
.+|+ |+.++..+ +|.|++.|+.+++.. .+..+.+.+....|+|||+.|+.... + ..|++++...+.....
T Consensus 6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l 83 (281)
T d1k32a2 6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI 83 (281)
T ss_dssp EEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred CCCCCCCCEEEEEE-CCCEEEEECCCCCEE-EEECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCEEEE
T ss_conf 58887999999990-996899989999879-9766998526779878999899998628987722899998259952886
Q ss_pred EE------CCCCCEEEEEECCCCCEEEEE
Q ss_conf 81------689874899996899999999
Q 001472 138 YK------GHTRGINTIRFTPDGRWVVSG 160 (1072)
Q Consensus 138 l~------~h~~~VtsIafSPDG~~LvTG 160 (1072)
.. ..........|+|+|+.++..
T Consensus 84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~ 112 (281)
T d1k32a2 84 TYFSGKSTGRRMFTDVAGFDPDGNLIIST 112 (281)
T ss_dssp CCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 41688754764443431027988779999
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.66 E-value=1.3e-05 Score=50.81 Aligned_cols=218 Identities=13% Similarity=0.048 Sum_probs=84.2
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECC
Q ss_conf 99991189939999978990999987999427995079989479999389999999986991999986999069998078
Q 001472 20 CISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGH 99 (1072)
Q Consensus 20 sIafSPdg~~lLaTGs~DGtI~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~IWDl~tgk~i~tl~~h 99 (1072)
+..|++..+.++.+--..+.|..|+..++... .+. ....+.++++.+++.++++ +.+ .+.++|..+++........
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~ 97 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE 97 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred CCEEECCCCEEEEEECCCCEEEEEECCCCEEE-EEE-CCCCCEEEEEECCCCEEEE-EEC-CCEEEECCCCEEEEEEEEE
T ss_conf 87598999999999878999999989989599-998-9998179899659988999-737-6389504645135786640
Q ss_pred ----CCCEEEEEECCCCCEEEEEEC----CCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEE-ECCCEEEEEE
Q ss_conf ----988279999379989999968----9809999889990799981689874899996899999999-6699299999
Q 001472 100 ----KSNCTAVEFHPFGEFFASGCM----DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSG-GFDNVVKVWD 170 (1072)
Q Consensus 100 ----~~~VtsIafSPdgk~LaSgs~----DGsI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~LvTG-S~DGsI~IWD 170 (1072)
...+..+.+.++|++.++... .+.-.+|.+..++....... ......++|+++++.++.+ +..+.|..|+
T Consensus 98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~ 176 (295)
T d2ghsa1 98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVP 176 (295)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred CCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEEC-CCCCCEEEECCCCCEEEEEECCCCEEEEEE
T ss_conf 4787661013579799999887426431333305766229968998650-687640246587766898515663246764
Q ss_pred CCCCC--------EEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEE-CCCCEE
Q ss_conf 89991--------689953048865899985999699999789939999889980887407998784799991-799999
Q 001472 171 LTAGK--------LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFH-PDGRTL 241 (1072)
Q Consensus 171 l~tgk--------~i~~l~~h~g~ItsLafSPdg~lLaTgS~DGtIrIWDl~tgk~i~~l~~h~~~VtsIafS-PDGk~L 241 (1072)
+.... ....+....+....+++..+|++.++....+.|..||. .++.+..+......+++++|- ++.+.|
T Consensus 177 ~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~L 255 (295)
T d2ghsa1 177 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRL 255 (295)
T ss_dssp BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEE
T ss_pred ECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCEEEECC-CCCEEEEECCCCCCEEEEEEECCCCCEE
T ss_conf 535555324535788416755566632678699998953207884688569-9928668638998527989828999999
Q ss_pred EE
Q ss_conf 99
Q 001472 242 FS 243 (1072)
Q Consensus 242 as 243 (1072)
++
T Consensus 256 yv 257 (295)
T d2ghsa1 256 LV 257 (295)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.64 E-value=1.4e-05 Score=50.51 Aligned_cols=93 Identities=9% Similarity=0.079 Sum_probs=41.6
Q ss_pred EECC--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEC-C-----CEEEEEECCCCEEEE
Q ss_conf 9118--9939999978990999987999427995079989479999389999999986-9-----919999869990699
Q 001472 23 IGKK--ACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS-T-----GVIKLWDLEESKMVR 94 (1072)
Q Consensus 23 fSPd--g~~lLaTGs~DGtI~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS~-D-----GsI~IWDl~tgk~i~ 94 (1072)
++|+ |.+++++ .+|.|.+.++..++. ..+..+...+....|||||+.|+.... + +.|.+++..+++...
T Consensus 6 ~sPdi~G~~v~f~--~~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 6 LNPDIHGDRIIFV--CCDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp EEEEEETTEEEEE--ETTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred CCCCCCCCEEEEE--ECCCEEEEECCCCCE-EEEECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCEEE
T ss_conf 5888799999999--099689998999987-9976699852677987899989999862898772289999825995288
Q ss_pred EEEC------CCCCEEEEEECCCCCEEEEE
Q ss_conf 9807------89882799993799899999
Q 001472 95 TLTG------HKSNCTAVEFHPFGEFFASG 118 (1072)
Q Consensus 95 tl~~------h~~~VtsIafSPdgk~LaSg 118 (1072)
.... .........|+|+++.++..
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~ 112 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIIST 112 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 641688754764443431027988779999
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.61 E-value=1.7e-05 Score=49.85 Aligned_cols=189 Identities=11% Similarity=0.038 Sum_probs=111.9
Q ss_pred EEEEEE-CCCEEEEEEC-CCCCEEEEEECCCCC-----------EEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEE
Q ss_conf 999997-8990999987-999427995079989-----------479999389999999986991999986999069998
Q 001472 30 FLITGG-DDQKVNLWAI-GKPTALMSLCGLSSP-----------VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTL 96 (1072)
Q Consensus 30 lLaTGs-~DGtI~IWDi-~t~~~i~sl~~hs~~-----------ItsLafSPdg~~LatGS~DGsI~IWDl~tgk~i~tl 96 (1072)
.++.++ .++.|...|. .+++.+..+...... -..+++. +..++.++.+|.+.-.|.++++.+...
T Consensus 64 ~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w~~ 141 (571)
T d2ad6a1 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCEEEEEECCCCEEEEEHHHHHHHCCC
T ss_conf 999942879959999489998668883588886544200247688862650--886999917975782100211220234
Q ss_pred ECCC----CCEEEEEECCCCCEEEEEEC------CCEEEEEECCCCEEEEEEECCC------------------------
Q ss_conf 0789----88279999379989999968------9809999889990799981689------------------------
Q 001472 97 TGHK----SNCTAVEFHPFGEFFASGCM------DTNLKIWDIRKKGCIHTYKGHT------------------------ 142 (1072)
Q Consensus 97 ~~h~----~~VtsIafSPdgk~LaSgs~------DGsI~IWDlrsgk~i~~l~~h~------------------------ 142 (1072)
.... ..++..-... +..++++.. .|.|+-+|+.+++.+..+....
T Consensus 142 ~~~~~~~~~~~t~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (571)
T d2ad6a1 142 EVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLG 220 (571)
T ss_dssp ECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHH
T ss_pred CCCCCCCCCCEEECCEEE-CCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 445544324145367575-8858885023442346747999888985889970468864445555445443346755556
Q ss_pred -------------CCE-EEEEECCCCCEEEEEEC----------------CCEEEEEECCCCCEEEEEEECCCCE-----
Q ss_conf -------------874-89999689999999966----------------9929999989991689953048865-----
Q 001472 143 -------------RGI-NTIRFTPDGRWVVSGGF----------------DNVVKVWDLTAGKLLHDFKFHEGHI----- 187 (1072)
Q Consensus 143 -------------~~V-tsIafSPDG~~LvTGS~----------------DGsI~IWDl~tgk~i~~l~~h~g~I----- 187 (1072)
..+ ....+.+...+++.+.. ...+...|..+++.+..++.....+
T Consensus 221 ~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~ 300 (571)
T d2ad6a1 221 TKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAG 300 (571)
T ss_dssp HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHEECCCCCCCCCCCCCC
T ss_conf 64567763143797520463305200834564034567522345663355653254412550110012456763314656
Q ss_pred ----EEEEECCCC---CEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf ----899985999---6999997899399998899808874
Q 001472 188 ----RSIDFHPLE---FLLATGSADRTVKFWDLETFELIGS 221 (1072)
Q Consensus 188 ----tsLafSPdg---~lLaTgS~DGtIrIWDl~tgk~i~~ 221 (1072)
....+..++ ..++.++.+|.++++|..+++.+..
T Consensus 301 ~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~ 341 (571)
T d2ad6a1 301 VNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA 341 (571)
T ss_dssp CCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEE
T ss_conf 55641145511576654046326564499985689837655
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=98.53 E-value=2.7e-05 Score=48.54 Aligned_cols=191 Identities=12% Similarity=0.050 Sum_probs=108.0
Q ss_pred CEEEEEECCCEEEEEEC-CCCCEEEEEECCCC-----------CEEEEEECCC----CCEEEEEECCCEEEEEECCCCEE
Q ss_conf 39999978990999987-99942799507998-----------9479999389----99999998699199998699906
Q 001472 29 RFLITGGDDQKVNLWAI-GKPTALMSLCGLSS-----------PVDSVAFDSA----EVLVLAGASTGVIKLWDLEESKM 92 (1072)
Q Consensus 29 ~lLaTGs~DGtI~IWDi-~t~~~i~sl~~hs~-----------~ItsLafSPd----g~~LatGS~DGsI~IWDl~tgk~ 92 (1072)
.++++++.++.+...+. .+++.+..+..... .-+.+++.++ ...++.++.|+.|.-.|..+++.
T Consensus 64 ~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~ 143 (596)
T d1w6sa_ 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (596)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEECCCCCCE
T ss_conf 99995178996899957998877887038788643432135666651698327998862999980798768543656841
Q ss_pred EEEEECCCC----CEE-EEEECCCCCEEEEEEC------CCEEEEEECCCCEEEEEEECCC-------------------
Q ss_conf 999807898----827-9999379989999968------9809999889990799981689-------------------
Q 001472 93 VRTLTGHKS----NCT-AVEFHPFGEFFASGCM------DTNLKIWDIRKKGCIHTYKGHT------------------- 142 (1072)
Q Consensus 93 i~tl~~h~~----~Vt-sIafSPdgk~LaSgs~------DGsI~IWDlrsgk~i~~l~~h~------------------- 142 (1072)
+..+..... .++ ...+. +..++++.. .|.|+-||..+++.+..+....
T Consensus 144 ~w~~~~~d~~~~~~~t~~P~v~--~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g 221 (596)
T d1w6sa_ 144 VWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (596)
T ss_dssp EEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred ECCCCCCCCCCCCCCCCCCCEE--CCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 0231014655564224588177--77589930234443357328988788857788653588655455544543333345
Q ss_pred ------------------C-CEEEEEECCCCCEEEEEEC----------------CCEEEEEECCCCCEEEEEEECCC--
Q ss_conf ------------------8-7489999689999999966----------------99299999899916899530488--
Q 001472 143 ------------------R-GINTIRFTPDGRWVVSGGF----------------DNVVKVWDLTAGKLLHDFKFHEG-- 185 (1072)
Q Consensus 143 ------------------~-~VtsIafSPDG~~LvTGS~----------------DGsI~IWDl~tgk~i~~l~~h~g-- 185 (1072)
. .-..+.+.+...+++.+.. ...|...|+.+++.+..++....
T Consensus 222 ~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~ 301 (596)
T d1w6sa_ 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (596)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 45546666788733347874225622156777254056455565202356533344430102635500100124030256
Q ss_pred -------CEEEEEE-CCCC---CEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf -------6589998-5999---6999997899399998899808874
Q 001472 186 -------HIRSIDF-HPLE---FLLATGSADRTVKFWDLETFELIGS 221 (1072)
Q Consensus 186 -------~ItsLaf-SPdg---~lLaTgS~DGtIrIWDl~tgk~i~~ 221 (1072)
.+..+.. ..++ ..++....+|.++++|..+++.+..
T Consensus 302 Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~ 348 (596)
T d1w6sa_ 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (596)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCEECCCCCCCEEEECCCCCCEEEE
T ss_conf 57765421065310333355532100146543225406778825540
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=98.49 E-value=3.5e-05 Score=47.71 Aligned_cols=295 Identities=12% Similarity=0.052 Sum_probs=141.0
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEECCCC----------C-EEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEEC
Q ss_conf 999997899099998799942799507998----------9-47999938999999998699199998699906999807
Q 001472 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSS----------P-VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG 98 (1072)
Q Consensus 30 lLaTGs~DGtI~IWDi~t~~~i~sl~~hs~----------~-ItsLafSPdg~~LatGS~DGsI~IWDl~tgk~i~tl~~ 98 (1072)
.++.++.++.|.-.|..+++.+..+..... . -..+.. .+..++.+..++.|.-.|..+++.+.....
T Consensus 68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~~ 145 (560)
T d1kv9a2 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (560)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCE--ECCEEEEEECCCEEEEEECCCCCEEECCCC
T ss_conf 999978999599996899987988779877644544322465357504--688499973898799997778957730576
Q ss_pred CCCC-EEEEEECC--CCCEEEEEEC------CCEEEEEECCCCEEEEEEECCC---------------------------
Q ss_conf 8988-27999937--9989999968------9809999889990799981689---------------------------
Q 001472 99 HKSN-CTAVEFHP--FGEFFASGCM------DTNLKIWDIRKKGCIHTYKGHT--------------------------- 142 (1072)
Q Consensus 99 h~~~-VtsIafSP--dgk~LaSgs~------DGsI~IWDlrsgk~i~~l~~h~--------------------------- 142 (1072)
.... ...+.-.| .+..++++.. .|.|.-+|..+++.+..+..-.
T Consensus 146 ~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (560)
T d1kv9a2 146 TDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKL 225 (560)
T ss_dssp SCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHH
T ss_pred CCCCCCEEEEEEEEEECCCCCCCCCCEECCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67554045432004506851036531100135538999778862776641003455677643112234566666531002
Q ss_pred ---CC-EEEEEECCCCCEEEEEEC-------------------CCEEEEEECCCCCEEEEEEECCCCEE---------EE
Q ss_conf ---87-489999689999999966-------------------99299999899916899530488658---------99
Q 001472 143 ---RG-INTIRFTPDGRWVVSGGF-------------------DNVVKVWDLTAGKLLHDFKFHEGHIR---------SI 190 (1072)
Q Consensus 143 ---~~-VtsIafSPDG~~LvTGS~-------------------DGsI~IWDl~tgk~i~~l~~h~g~It---------sL 190 (1072)
.. -..+.+.+...+++.+.. ...|...|+.+++....++.....+. -.
T Consensus 226 ~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~ 305 (560)
T d1kv9a2 226 GGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLA 305 (560)
T ss_dssp CEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEE
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEE
T ss_conf 67887556552143468036447887435556424667765453036873377642158871036533234565124420
Q ss_pred EECCCC---CEEEEEECCCEEEEEECCCCCEEEEECCCCC------------------------------------CEEE
Q ss_conf 985999---6999997899399998899808874079987------------------------------------8479
Q 001472 191 DFHPLE---FLLATGSADRTVKFWDLETFELIGSTRPEVT------------------------------------GVHA 231 (1072)
Q Consensus 191 afSPdg---~lLaTgS~DGtIrIWDl~tgk~i~~l~~h~~------------------------------------~Vts 231 (1072)
.+..++ ..++.+..+|.++++|..+++.+........ .-..
T Consensus 306 ~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~ 385 (560)
T d1kv9a2 306 ELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHS 385 (560)
T ss_dssp EEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSC
T ss_pred EEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 03117960256662576536999846888243534446544334557221321000123223355056535666545656
Q ss_pred EEEECCCCEEEEEECC-------------------------------------CEEEEEECCCEEECCCCCCCCEEEEEE
Q ss_conf 9991799999999799-------------------------------------499999358722101126887045699
Q 001472 232 ITFHPDGRTLFSGFDD-------------------------------------NLKVYSWEPVICHDSVDMGWSTLGDLC 274 (1072)
Q Consensus 232 IafSPDGk~LasGsdg-------------------------------------~I~Iwdl~s~~~~~~i~~~~s~is~l~ 274 (1072)
.+++|+...++....+ .+.-||..+++..-.............
T Consensus 386 ~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l 465 (560)
T d1kv9a2 386 MSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTL 465 (560)
T ss_dssp CEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEE
T ss_pred CCCCCCCCEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCEE
T ss_conf 31668887165351016620001466644444423466766666788766666468870778837310257888877405
Q ss_pred ECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCE
Q ss_conf 4599999999869939999847993244312789999987319999799994222
Q 001472 275 INDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLE 329 (1072)
Q Consensus 275 spDGklLasgs~DGsIrIWDids~~l~~~~~~~~~~~~s~ItsVaFSPDGs~lLa 329 (1072)
...+.+++.++.||.++.+|.+.++..+..... ...... -+.|..||+..++
T Consensus 466 ~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~-~~~~~~--P~ty~~dGkqyv~ 517 (560)
T d1kv9a2 466 STAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ-SGIVAA--PMTFELAGRQYVA 517 (560)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECS-SCCCSC--CEEEEETTEEEEE
T ss_pred EECCCEEEEECCCCCEEEEECCCCCEEEEEECC-CCCCCC--CEEEEECCEEEEE
T ss_conf 987998999778981999999998582799899-995516--7799989999999
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=98.33 E-value=8e-05 Score=45.25 Aligned_cols=190 Identities=13% Similarity=0.057 Sum_probs=88.1
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEECCC----------CCE-EEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEEC
Q ss_conf 99999789909999879994279950799----------894-7999938999999998699199998699906999807
Q 001472 30 FLITGGDDQKVNLWAIGKPTALMSLCGLS----------SPV-DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG 98 (1072)
Q Consensus 30 lLaTGs~DGtI~IWDi~t~~~i~sl~~hs----------~~I-tsLafSPdg~~LatGS~DGsI~IWDl~tgk~i~tl~~ 98 (1072)
.++.++.++.|.-+|..+++.+..+.... ..+ ..+.+. +..++.++.++.+.-.|..+++.+.....
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~~ 156 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQNT 156 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCCEEEEECCCCEEEECCCCCCCEECCCC
T ss_conf 9999789996999958999858786798876533334566566652387--88189973365406661624300101467
Q ss_pred CCCCE--EEEEECC--CCCEEEEEEC------CCEEEEEECCCCEEEEEEECCC--------------------------
Q ss_conf 89882--7999937--9989999968------9809999889990799981689--------------------------
Q 001472 99 HKSNC--TAVEFHP--FGEFFASGCM------DTNLKIWDIRKKGCIHTYKGHT-------------------------- 142 (1072)
Q Consensus 99 h~~~V--tsIafSP--dgk~LaSgs~------DGsI~IWDlrsgk~i~~l~~h~-------------------------- 142 (1072)
..... ..+.-.| .+..++++.. .|.|+.+|..+++.+..+....
T Consensus 157 ~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 236 (573)
T d1kb0a2 157 FEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWW 236 (573)
T ss_dssp TTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHH
T ss_pred CCCCCCEEEEECCEEEEECCEEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 56876507860102797062799213445543221899856886510255310456777777543223432358877546
Q ss_pred -----CCE-EEEEECCCCCEEEEEEC-------------------CCEEEEEECCCCCEEEEEEECCCCE---------E
Q ss_conf -----874-89999689999999966-------------------9929999989991689953048865---------8
Q 001472 143 -----RGI-NTIRFTPDGRWVVSGGF-------------------DNVVKVWDLTAGKLLHDFKFHEGHI---------R 188 (1072)
Q Consensus 143 -----~~V-tsIafSPDG~~LvTGS~-------------------DGsI~IWDl~tgk~i~~l~~h~g~I---------t 188 (1072)
..+ ....+.+...+++.+.. ...|...|..+++....++.....+ .
T Consensus 237 ~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~ 316 (573)
T d1kb0a2 237 EAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMI 316 (573)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCE
T ss_pred ECCCCCCCCCCCEECHHHCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHEEECCCCCCCCCCCCCCCCEEE
T ss_conf 63798762356118543381551147775444100034566666642079961550001202443675112001220144
Q ss_pred EEEECCCC---CEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 99985999---6999997899399998899808874
Q 001472 189 SIDFHPLE---FLLATGSADRTVKFWDLETFELIGS 221 (1072)
Q Consensus 189 sLafSPdg---~lLaTgS~DGtIrIWDl~tgk~i~~ 221 (1072)
......++ ..++.+..+|.++++|..+++.+..
T Consensus 317 l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~ 352 (573)
T d1kb0a2 317 LADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISA 352 (573)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred ECCEECCCCCEEEEEECCCCCEEEEECCCCCCCCCC
T ss_conf 202001797236202125553168861243442231
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.93 E-value=0.00049 Score=39.80 Aligned_cols=259 Identities=13% Similarity=0.121 Sum_probs=123.5
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEECCCCC---------------------------------------E--EEEEECC
Q ss_conf 9999978990999987999427995079989---------------------------------------4--7999938
Q 001472 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSP---------------------------------------V--DSVAFDS 68 (1072)
Q Consensus 30 lLaTGs~DGtI~IWDi~t~~~i~sl~~hs~~---------------------------------------I--tsLafSP 68 (1072)
.+.+|+..|.|+++-+...+.+..+..+.-. . -.+.|..
T Consensus 15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~Td 94 (459)
T d1fwxa2 15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 94 (459)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEET
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99407866338999548863587701035787745576446777763356722322332058602357876887514448
Q ss_pred ---CCCEEEEEEC-CCEEEEEECCCCEEEEEEEC-CCCCEEEEEECCC--CCEEEEEECC------------------CE
Q ss_conf ---9999999986-99199998699906999807-8988279999379--9899999689------------------80
Q 001472 69 ---AEVLVLAGAS-TGVIKLWDLEESKMVRTLTG-HKSNCTAVEFHPF--GEFFASGCMD------------------TN 123 (1072)
Q Consensus 69 ---dg~~LatGS~-DGsI~IWDl~tgk~i~tl~~-h~~~VtsIafSPd--gk~LaSgs~D------------------Gs 123 (1072)
||+++++... ++.|.+.|+.+.+....+.. ....+..+...++ -.|++..+.. +.
T Consensus 95 GtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~ 174 (459)
T d1fwxa2 95 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 174 (459)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEECCCEEEEEEEECCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCEE
T ss_conf 85551289997589863899988540566799667887775012025797479973676544459998513240112268
Q ss_pred EEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCC--EEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEE
Q ss_conf 99998899907999816898748999968999999996699--2999998999168995304886589998599969999
Q 001472 124 LKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN--VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLAT 201 (1072)
Q Consensus 124 I~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~LvTGS~DG--sI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaT 201 (1072)
+.++|..+.+....+... .....+.++++|+++++.+.+. .+.+.++.....-...-..-..+ ..+.++|.+-..
T Consensus 175 ~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~ri--e~av~~Gk~~ei 251 (459)
T d1fwxa2 175 FTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI--EKAIAAGDYQEL 251 (459)
T ss_dssp EEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH--HHHHHHTCSEEE
T ss_pred EEEEECCCCEEEEEEEEC-CCHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCEEEEEECHHHH--HHHHHCCCCEEE
T ss_conf 999966776698996408-97201531899998999713556885322225245418999634886--876405993796
Q ss_pred EECCCEEEEEECCCC---CEEEEECCCCCCEEEEEEECCCCEEEEEE--CCCEEEEEECCCE------------EECCCC
Q ss_conf 978993999988998---08874079987847999917999999997--9949999935872------------210112
Q 001472 202 GSADRTVKFWDLETF---ELIGSTRPEVTGVHAITFHPDGRTLFSGF--DDNLKVYSWEPVI------------CHDSVD 264 (1072)
Q Consensus 202 gS~DGtIrIWDl~tg---k~i~~l~~h~~~VtsIafSPDGk~LasGs--dg~I~Iwdl~s~~------------~~~~i~ 264 (1072)
+.+.+.|.... ..+..+ +-......+.++|||++++++. +..+.|+|++... ......
T Consensus 252 ----ngV~VVD~~~~~~~~v~~yI-PVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e 326 (459)
T d1fwxa2 252 ----NGVKVVDGRKEASSLFTRYI-PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 326 (459)
T ss_dssp ----TTEEEEECSGG--CSSEEEE-EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred ----CCCEEECCCCCCCCCEEEEE-ECCCCCCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECC
T ss_conf ----99466154236785203898-6589877338899997899938858957999822535665046884521796113
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 68870456994599999999869939999847
Q 001472 265 MGWSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1072)
Q Consensus 265 ~~~s~is~l~spDGklLasgs~DGsIrIWDid 296 (1072)
.+..++...|...|....+-.-|..|.-|+++
T Consensus 327 lglgPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 327 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp CCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred CCCCCCCCCCCCCCEEEEEEECCCEEEEEECC
T ss_conf 57676620338984299986123169997344
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.92 E-value=0.0005 Score=39.72 Aligned_cols=147 Identities=14% Similarity=-0.007 Sum_probs=66.5
Q ss_pred EEEECCCCCEEEEE-ECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECC
Q ss_conf 99993899999999-86991999986999069998078988279999379989999968980999988999079998168
Q 001472 63 SVAFDSAEVLVLAG-ASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGH 141 (1072)
Q Consensus 63 sLafSPdg~~LatG-S~DGsI~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~l~~h 141 (1072)
+..|++....|+.. -..+.|..||..+++.. .+. ....+.++.+.+++.++++ +.+ .+..+|..+++........
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~ 97 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE 97 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred CCEEECCCCEEEEEECCCCEEEEEECCCCEEE-EEE-CCCCCEEEEEECCCCEEEE-EEC-CCEEEECCCCEEEEEEEEE
T ss_conf 87598999999999878999999989989599-998-9998179899659988999-737-6389504645135786640
Q ss_pred ----CCCEEEEEECCCCCEEEEEEC----CCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEE-CCCEEEEEE
Q ss_conf ----987489999689999999966----99299999899916899530488658999859996999997-899399998
Q 001472 142 ----TRGINTIRFTPDGRWVVSGGF----DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS-ADRTVKFWD 212 (1072)
Q Consensus 142 ----~~~VtsIafSPDG~~LvTGS~----DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTgS-~DGtIrIWD 212 (1072)
...+..+.+.++|++.++... .+.-.+|.+..++....+. .......++|++++..++... ..+.|+.|+
T Consensus 98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~ 176 (295)
T d2ghsa1 98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVP 176 (295)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred CCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEE-CCCCCCEEEECCCCCEEEEEECCCCEEEEEE
T ss_conf 478766101357979999988742643133330576622996899865-0687640246587766898515663246764
Q ss_pred CC
Q ss_conf 89
Q 001472 213 LE 214 (1072)
Q Consensus 213 l~ 214 (1072)
+.
T Consensus 177 ~d 178 (295)
T d2ghsa1 177 LD 178 (295)
T ss_dssp BC
T ss_pred EC
T ss_conf 53
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.87 E-value=0.0006 Score=39.18 Aligned_cols=25 Identities=4% Similarity=0.252 Sum_probs=15.9
Q ss_pred EEEEECCCEEEEEECCCCEEEEEEE
Q ss_conf 9999869919999869990699980
Q 001472 73 VLAGASTGVIKLWDLEESKMVRTLT 97 (1072)
Q Consensus 73 LatGS~DGsI~IWDl~tgk~i~tl~ 97 (1072)
|.+|+..|.++++-+.+++.+..+.
T Consensus 16 f~SgG~sG~v~v~G~PSmR~l~~ip 40 (459)
T d1fwxa2 16 FWSSGQSGEMRILGIPSMRELMRVP 40 (459)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEE
T ss_pred EEECCCCCEEEEEECCCCCEEEEEE
T ss_conf 9407866338999548863587701
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.56 E-value=0.0017 Score=35.98 Aligned_cols=107 Identities=12% Similarity=0.129 Sum_probs=48.3
Q ss_pred EEEEEEC-CCEEEEEECC-CCEEEEEEECCCCC-----------EEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEE
Q ss_conf 9999986-9919999869-99069998078988-----------279999379989999968980999988999079998
Q 001472 72 LVLAGAS-TGVIKLWDLE-ESKMVRTLTGHKSN-----------CTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY 138 (1072)
Q Consensus 72 ~LatGS~-DGsI~IWDl~-tgk~i~tl~~h~~~-----------VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~l 138 (1072)
.+++++. ++.|...|.. +|+.+..+...... -..+++. +..++.++.+|.++-.|.++++.+...
T Consensus 64 ~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w~~ 141 (571)
T d2ad6a1 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCEEEEEECCCCEEEEEHHHHHHHCCC
T ss_conf 999942879959999489998668883588886544200247688862650--886999917975782100211220234
Q ss_pred ECCC----CCEEEEEECCCCCEEEEEE------CCCEEEEEECCCCCEEEEEE
Q ss_conf 1689----8748999968999999996------69929999989991689953
Q 001472 139 KGHT----RGINTIRFTPDGRWVVSGG------FDNVVKVWDLTAGKLLHDFK 181 (1072)
Q Consensus 139 ~~h~----~~VtsIafSPDG~~LvTGS------~DGsI~IWDl~tgk~i~~l~ 181 (1072)
.... ..++..-.-.++ .++.+. ..|.|..+|+.+++.+..+.
T Consensus 142 ~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 193 (571)
T d2ad6a1 142 EVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp ECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCCCCCCCCCEEECCEEECC-EEEEEECCCCCCCCCCEEEEECCCCCEEEEEE
T ss_conf 44554432414536757588-58885023442346747999888985889970
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.53 E-value=0.0019 Score=35.71 Aligned_cols=155 Identities=8% Similarity=-0.050 Sum_probs=55.4
Q ss_pred EEEEEECCCCCEEEEEE-CCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCCEEEEE
Q ss_conf 27999937998999996-898099998899907999816898748999968999999-9966992999998999168995
Q 001472 103 CTAVEFHPFGEFFASGC-MDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVV-SGGFDNVVKVWDLTAGKLLHDF 180 (1072)
Q Consensus 103 VtsIafSPdgk~LaSgs-~DGsI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~Lv-TGS~DGsI~IWDl~tgk~i~~l 180 (1072)
+..++|....+.++.+. ..+.|+..++........+......+..+++..-+..|+ +-...+.|.+.++........+
T Consensus 38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~ 117 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF 117 (263)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred EEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCEEEEEE
T ss_conf 79999985899999998999919999766587289887012642079996368868884267897998805881677771
Q ss_pred EECCCCEEEEEECCCCCEEEEEECC---CEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE--CCCEEEEEEC
Q ss_conf 3048865899985999699999789---9399998899808874079987847999917999999997--9949999935
Q 001472 181 KFHEGHIRSIDFHPLEFLLATGSAD---RTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF--DDNLKVYSWE 255 (1072)
Q Consensus 181 ~~h~g~ItsLafSPdg~lLaTgS~D---GtIrIWDl~tgk~i~~l~~h~~~VtsIafSPDGk~LasGs--dg~I~Iwdl~ 255 (1072)
......+..++++|...+++..... +.|...++..................+++++.+..|+... .+.|...+++
T Consensus 118 ~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~ 197 (263)
T d1npea_ 118 DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA 197 (263)
T ss_dssp CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCCCCCCEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECC
T ss_conf 25666872799925669279953489976899966789972365530355553079950475899992899999999999
Q ss_pred CC
Q ss_conf 87
Q 001472 256 PV 257 (1072)
Q Consensus 256 s~ 257 (1072)
..
T Consensus 198 g~ 199 (263)
T d1npea_ 198 QP 199 (263)
T ss_dssp EE
T ss_pred CC
T ss_conf 99
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.42 E-value=0.0026 Score=34.76 Aligned_cols=109 Identities=18% Similarity=0.171 Sum_probs=55.1
Q ss_pred CEEEEEECCCEEEEEECCCCEEEEEEECCCC-----------CEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEE
Q ss_conf 9999998699199998699906999807898-----------82799993799899999689809999889990799981
Q 001472 71 VLVLAGASTGVIKLWDLEESKMVRTLTGHKS-----------NCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK 139 (1072)
Q Consensus 71 ~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~-----------~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~l~ 139 (1072)
..+++++.++.|.-.|..+|+.+..+..... .-..+... +..++.+..++.|+-.|..+++.+..+.
T Consensus 67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~g~l~Alda~tG~~~w~~~ 144 (560)
T d1kv9a2 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (560)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEE--CCEEEEEECCCEEEEEECCCCCEEECCC
T ss_conf 99999789995999968999879887798776445443224653575046--8849997389879999777895773057
Q ss_pred CCCCC-EEEEEECC--CCCEEEEEEC------CCEEEEEECCCCCEEEEEE
Q ss_conf 68987-48999968--9999999966------9929999989991689953
Q 001472 140 GHTRG-INTIRFTP--DGRWVVSGGF------DNVVKVWDLTAGKLLHDFK 181 (1072)
Q Consensus 140 ~h~~~-VtsIafSP--DG~~LvTGS~------DGsI~IWDl~tgk~i~~l~ 181 (1072)
..... ...+.-.| ....++.+.. .|.|..+|..+++.+..+.
T Consensus 145 ~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 145 TTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp CSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCCCCCCEEEEEEEEEECCCCCCCCCCEECCCCCEEEEEECCCCEEEEEEE
T ss_conf 667554045432004506851036531100135538999778862776641
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.35 E-value=0.0031 Score=34.24 Aligned_cols=211 Identities=10% Similarity=0.012 Sum_probs=106.5
Q ss_pred EEEEEECCCEEEEEECCCCC-----EEEEEECCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCEEEEEEECCCCCE
Q ss_conf 99999789909999879994-----2799507998947999938999999998-69919999869990699980789882
Q 001472 30 FLITGGDDQKVNLWAIGKPT-----ALMSLCGLSSPVDSVAFDSAEVLVLAGA-STGVIKLWDLEESKMVRTLTGHKSNC 103 (1072)
Q Consensus 30 lLaTGs~DGtI~IWDi~t~~-----~i~sl~~hs~~ItsLafSPdg~~LatGS-~DGsI~IWDl~tgk~i~tl~~h~~~V 103 (1072)
+|+.+.. +.|+-..++... ....+..+...+..++|....+.++... ..+.|...++........+.......
T Consensus 3 fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p 81 (263)
T d1npea_ 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (263)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEECC-CEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCC
T ss_conf 9999489-829999788866554453100126877579999985899999998999919999766587289887012642
Q ss_pred EEEEECCCCCEEEEE-ECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC---CEEEEEECCCCCEEEE
Q ss_conf 799993799899999-689809999889990799981689874899996899999999669---9299999899916899
Q 001472 104 TAVEFHPFGEFFASG-CMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD---NVVKVWDLTAGKLLHD 179 (1072)
Q Consensus 104 tsIafSPdgk~LaSg-s~DGsI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~LvTGS~D---GsI~IWDl~tgk~i~~ 179 (1072)
.++++..-+..|+.+ ...+.|.+.++........+......+..+++.|...+++....+ +.|...++........
T Consensus 82 ~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i 161 (263)
T d1npea_ 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL 161 (263)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE
T ss_pred CEEEEECCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCEEE
T ss_conf 07999636886888426789799880588167777125666872799925669279953489976899966789972365
Q ss_pred EEECCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEE
Q ss_conf 530488658999859996999997-89939999889980887407998784799991799999999
Q 001472 180 FKFHEGHIRSIDFHPLEFLLATGS-ADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG 244 (1072)
Q Consensus 180 l~~h~g~ItsLafSPdg~lLaTgS-~DGtIrIWDl~tgk~i~~l~~h~~~VtsIafSPDGk~LasG 244 (1072)
....-.....+++.+.+..|+.+. ..+.|...++........+... ....++++. +.+|+..
T Consensus 162 ~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~-~~P~~lav~--~~~lYwt 224 (263)
T d1npea_ 162 AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY--GKNLYYT 224 (263)
T ss_dssp ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE--TTEEEEE
T ss_pred EEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEECCC-CCCEEEEEE--CCEEEEE
T ss_conf 53035555307995047589999289999999999999769998899-986899999--9999999
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.27 E-value=0.0038 Score=33.62 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=33.8
Q ss_pred CEEEEEECCCEEEEEECCCCEEEEEEECCC--------CC-EEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEE
Q ss_conf 999999869919999869990699980789--------88-279999379989999968980999988999079998
Q 001472 71 VLVLAGASTGVIKLWDLEESKMVRTLTGHK--------SN-CTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY 138 (1072)
Q Consensus 71 ~~LatGS~DGsI~IWDl~tgk~i~tl~~h~--------~~-VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~l 138 (1072)
..|++++.++.|.-.|..+|+.+..+.... .. -..+.+. +..++.++.++.++-.|..+++.+...
T Consensus 69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~ 143 (582)
T d1flga_ 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred CEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEE--CCCEEEECCCCEEEEECCCCCCEEEEE
T ss_conf 999996899959999689998688876889876553334446774586--781588648874998116666302111
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.00 E-value=0.0069 Score=31.86 Aligned_cols=106 Identities=9% Similarity=0.132 Sum_probs=48.8
Q ss_pred EECCCEEEEEEC-CCCEEEEEEECCCC-----------CEEEEEECCC----CCEEEEEECCCEEEEEECCCCEEEEEEE
Q ss_conf 986991999986-99906999807898-----------8279999379----9899999689809999889990799981
Q 001472 76 GASTGVIKLWDL-EESKMVRTLTGHKS-----------NCTAVEFHPF----GEFFASGCMDTNLKIWDIRKKGCIHTYK 139 (1072)
Q Consensus 76 GS~DGsI~IWDl-~tgk~i~tl~~h~~-----------~VtsIafSPd----gk~LaSgs~DGsI~IWDlrsgk~i~~l~ 139 (1072)
.+..+.+...|. .+|+.+..+..... ..+.+.+.++ ...++.++.|+.|+-.|.++++.+..+.
T Consensus 69 t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~~ 148 (596)
T d1w6sa_ 69 TSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVE 148 (596)
T ss_dssp CSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEECCCCCCEECCCC
T ss_conf 17899689995799887788703878864343213566665169832799886299998079876854365684102310
Q ss_pred CCCCCE-EEEEECC--CCCEEEEEEC------CCEEEEEECCCCCEEEEEE
Q ss_conf 689874-8999968--9999999966------9929999989991689953
Q 001472 140 GHTRGI-NTIRFTP--DGRWVVSGGF------DNVVKVWDLTAGKLLHDFK 181 (1072)
Q Consensus 140 ~h~~~V-tsIafSP--DG~~LvTGS~------DGsI~IWDl~tgk~i~~l~ 181 (1072)
...... ..+.-.| .+..++++.. .|.|.-+|..+|+.+..+.
T Consensus 149 ~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 149 NSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp CCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCCCCCCCCCCCCCCEECCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEE
T ss_conf 146555642245881777758993023444335732898878885778865
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.0072 Score=31.74 Aligned_cols=176 Identities=9% Similarity=-0.042 Sum_probs=75.8
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCE----EEEEEECCCCCEEEEEECCCCC
Q ss_conf 099998799942799507998947999938999999998-69919999869990----6999807898827999937998
Q 001472 39 KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGA-STGVIKLWDLEESK----MVRTLTGHKSNCTAVEFHPFGE 113 (1072)
Q Consensus 39 tI~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS-~DGsI~IWDl~tgk----~i~tl~~h~~~VtsIafSPdgk 113 (1072)
.|+..++........+. ....+.+++|++..+.++... ..+.|...++.... ....+......+..+++.+.+.
T Consensus 11 ~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~ 89 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (266)
T ss_dssp SEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred EEEEEECCCCCCEEEEC-CCCCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCC
T ss_conf 18999899985266417-99855999998089999999997997999993578887614899848999854689864265
Q ss_pred EEEEEE-CCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE--CCCEEEEEECCCCCEEEEEEECCCCEEEE
Q ss_conf 999996-898099998899907999816898748999968999999996--69929999989991689953048865899
Q 001472 114 FFASGC-MDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGG--FDNVVKVWDLTAGKLLHDFKFHEGHIRSI 190 (1072)
Q Consensus 114 ~LaSgs-~DGsI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~LvTGS--~DGsI~IWDl~tgk~i~~l~~h~g~ItsL 190 (1072)
.|+.+. ..+.|.+.++........+.........++++|...+++... ..+.|...++............-.....+
T Consensus 90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl 169 (266)
T d1ijqa1 90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 169 (266)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEECCCCCCEECCCCCCCCEEEEE
T ss_conf 28999548999985764895378887279988336999800394887126997302686368883441200453201699
Q ss_pred EECCCCCEEEEE-ECCCEEEEEECCC
Q ss_conf 985999699999-7899399998899
Q 001472 191 DFHPLEFLLATG-SADRTVKFWDLET 215 (1072)
Q Consensus 191 afSPdg~lLaTg-S~DGtIrIWDl~t 215 (1072)
++.+.+..|+.+ ...+.|...++..
T Consensus 170 ~iD~~~~~lYw~d~~~~~I~~~~~dG 195 (266)
T d1ijqa1 170 TLDLLSGRLYWVDSKLHSISSIDVNG 195 (266)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEECCCCEEEEECCCCCEEEEEECCC
T ss_conf 86133569999528967999998999
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.72 E-value=0.011 Score=30.41 Aligned_cols=108 Identities=16% Similarity=0.090 Sum_probs=53.1
Q ss_pred EEEEEECCCEEEEEECCCCEEEEEEECCCC----------C-EEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEEC
Q ss_conf 999998699199998699906999807898----------8-27999937998999996898099998899907999816
Q 001472 72 LVLAGASTGVIKLWDLEESKMVRTLTGHKS----------N-CTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG 140 (1072)
Q Consensus 72 ~LatGS~DGsI~IWDl~tgk~i~tl~~h~~----------~-VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~l~~ 140 (1072)
.+++++.++.|.-+|..+|+.+..+..... . -..+.+. +..++.+..++.++-.|..+++.+.....
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~~ 156 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQNT 156 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCCEEEEECCCCEEEECCCCCCCEECCCC
T ss_conf 9999789996999958999858786798876533334566566652387--88189973365406661624300101467
Q ss_pred CCCCE--EEEEECC--CCCEEEEEEC------CCEEEEEECCCCCEEEEEE
Q ss_conf 89874--8999968--9999999966------9929999989991689953
Q 001472 141 HTRGI--NTIRFTP--DGRWVVSGGF------DNVVKVWDLTAGKLLHDFK 181 (1072)
Q Consensus 141 h~~~V--tsIafSP--DG~~LvTGS~------DGsI~IWDl~tgk~i~~l~ 181 (1072)
..... ..+.-.| .+..+++++. .|.|..+|..+|+.+..+.
T Consensus 157 ~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 207 (573)
T d1kb0a2 157 FEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (573)
T ss_dssp TTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCCCCCEEEEECCEEEEECCEEEEECCCCCCCCCEEEEEECCCCCCEEEEE
T ss_conf 568765078601027970627992134455432218998568865102553
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.34 E-value=0.019 Score=28.77 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=28.9
Q ss_pred EEEEEECCCCEEEEEECC-----------CEEEEEECCCCCEEEEECCCCCCCCCCEEE-EEECCCCCCCCEEEEEEECC
Q ss_conf 456994599999999869-----------939999847993244312789999987319-99979999422299989616
Q 001472 270 LGDLCINDGKLLGCSFYR-----------NSVGIWVADVSHVEPYGVGAPEPDQSICTE-VKFNPPGSHSLEKVGIIGRS 337 (1072)
Q Consensus 270 is~l~spDGklLasgs~D-----------GsIrIWDids~~l~~~~~~~~~~~~s~Its-VaFSPDGs~lLa~VlaiG~s 337 (1072)
......+||+++++|+.+ ..+.+||.....-.... . ......-.+ ....+||+ +.+.|..
T Consensus 292 ~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~--~-~~~~R~~Hs~a~l~~dG~-----v~v~GG~ 363 (387)
T d1k3ia3 292 HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN--P-NSIVRVYHSISLLLPDGR-----VFNGGGG 363 (387)
T ss_dssp CEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC--C-CSSCCCTTEEEEECTTSC-----EEEEECC
T ss_pred CEEEECCCCEEEEECCCCCCCCCCCCCEECEEEEEECCCCEEEECC--C-CCCCCCCEEEEEECCCCE-----EEEEECC
T ss_conf 3356605874999888456766889947010798979999188788--9-997553127999988999-----9999698
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.76 E-value=0.035 Score=27.00 Aligned_cols=269 Identities=12% Similarity=0.065 Sum_probs=137.7
Q ss_pred CCEEEEEEECCCCCEEEEEECCC-----------EEEEEECCCCCEE--EE-EECCCCCEEEEEECCCCCEEEEEECC-C
Q ss_conf 98699999118993999997899-----------0999987999427--99-50799894799993899999999869-9
Q 001472 16 ANVNCISIGKKACRFLITGGDDQ-----------KVNLWAIGKPTAL--MS-LCGLSSPVDSVAFDSAEVLVLAGAST-G 80 (1072)
Q Consensus 16 g~VtsIafSPdg~~lLaTGs~DG-----------tI~IWDi~t~~~i--~s-l~~hs~~ItsLafSPdg~~LatGS~D-G 80 (1072)
..+.......++ ++++.|+.+. .+.+||..++... .. ...+........+.+++.+++.|+.+ .
T Consensus 20 ~~~~~a~~~~~g-kv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~ 98 (387)
T d1k3ia3 20 VPAAAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK 98 (387)
T ss_dssp CCSEEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTT
T ss_pred CCCEEEEEEECC-EEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCC
T ss_conf 101789992599-9999984057666788776068999988889686667789874452568999468868986368886
Q ss_pred EEEEEECCCCEEEEEEEC-CCCCEEEEEECCCCCEEEEEECC------CEEEEEECCCCEEEEEEECCC-----------
Q ss_conf 199998699906999807-89882799993799899999689------809999889990799981689-----------
Q 001472 81 VIKLWDLEESKMVRTLTG-HKSNCTAVEFHPFGEFFASGCMD------TNLKIWDIRKKGCIHTYKGHT----------- 142 (1072)
Q Consensus 81 sI~IWDl~tgk~i~tl~~-h~~~VtsIafSPdgk~LaSgs~D------GsI~IWDlrsgk~i~~l~~h~----------- 142 (1072)
.+.+||..+..-...-.. ....-...+..++++.++.++.+ ..+.+||..+..-.. +....
T Consensus 99 ~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~ 177 (387)
T d1k3ia3 99 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTADKQG 177 (387)
T ss_dssp CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCCCTTG
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCEEEEECCCCCCEEE-CCCCCCCCCCCCCCCC
T ss_conf 216756755744215656642101303553178266521366333543205663488895511-5887644311346651
Q ss_pred ----CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEE--C----CC--CEEEEEE-CCCCCEEEEEECCC---
Q ss_conf ----8748999968999999996699299999899916899530--4----88--6589998-59996999997899---
Q 001472 143 ----RGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF--H----EG--HIRSIDF-HPLEFLLATGSADR--- 206 (1072)
Q Consensus 143 ----~~VtsIafSPDG~~LvTGS~DGsI~IWDl~tgk~i~~l~~--h----~g--~ItsLaf-SPdg~lLaTgS~DG--- 206 (1072)
.....+...++++.++.++..+.+.+++..+......... . .. .-.++.+ ..++++++.|+...
T Consensus 178 ~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~ 257 (387)
T d1k3ia3 178 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 257 (387)
T ss_dssp GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred EEECCCEEEEEEECCCCEEEECCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCC
T ss_conf 36504226999707987787468677478148666717316655667665763222637886135882478875367887
Q ss_pred -----EEEEEECCCC---C-EEEEECC--CCCCEEEEEEECCCCEEEEEECC------------CEEEEEECCCEEECC-
Q ss_conf -----3999988998---0-8874079--98784799991799999999799------------499999358722101-
Q 001472 207 -----TVKFWDLETF---E-LIGSTRP--EVTGVHAITFHPDGRTLFSGFDD------------NLKVYSWEPVICHDS- 262 (1072)
Q Consensus 207 -----tIrIWDl~tg---k-~i~~l~~--h~~~VtsIafSPDGk~LasGsdg------------~I~Iwdl~s~~~~~~- 262 (1072)
...++++... . ....... ....-.+....++|+++++|... .+.+||.........
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~ 337 (387)
T d1k3ia3 258 SDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN 337 (387)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred CCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCEECEEEEEECCCCEEEECC
T ss_conf 75210000011111356788406036656654343356605874999888456766889947010798979999188788
Q ss_pred -CCCCCCEEE-EEEECCCCEEEEEEC
Q ss_conf -126887045-699459999999986
Q 001472 263 -VDMGWSTLG-DLCINDGKLLGCSFY 286 (1072)
Q Consensus 263 -i~~~~s~is-~l~spDGklLasgs~ 286 (1072)
+........ ....+||++++.|+.
T Consensus 338 ~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 338 PNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp CCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCCCCEEEEEECCCCEEEEEECC
T ss_conf 99975531279999889999999698
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.22 E-value=0.053 Score=25.74 Aligned_cols=232 Identities=13% Similarity=0.198 Sum_probs=125.3
Q ss_pred CEEEEEE---CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEE
Q ss_conf 3999997---8990999987999427995079989479999389999999986991999986999069998078988279
Q 001472 29 RFLITGG---DDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTA 105 (1072)
Q Consensus 29 ~lLaTGs---~DGtI~IWDi~t~~~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~Vts 105 (1072)
+|++.-. ....|.|.|+.++........ ...+.-.+|..+.|+.-+ ...+.++|+++.+.+..+. ..+.|..
T Consensus 33 kyicVRe~~~~~~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~-~~e~Vvf 107 (327)
T d1utca2 33 KFICIREKVGEQAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTF 107 (327)
T ss_dssp SEEEEEEEETTEEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCE
T ss_pred CEEEEEECCCCCCEEEEEECCCCCCCEECCC---CHHHHHCCCCCCEEEEEC-CCEEEEEEHHHHHHHCEEE-CCCCCEE
T ss_conf 7799983258984399998899876331443---616653088875799962-8868998446822111587-6888579
Q ss_pred EEECCCCCEEEEEECCCEEEEEECCCC-EEEEEEECCC----CCEEEEEECCCCCEEEEEE-------CCCEEEEEECCC
Q ss_conf 999379989999968980999988999-0799981689----8748999968999999996-------699299999899
Q 001472 106 VEFHPFGEFFASGCMDTNLKIWDIRKK-GCIHTYKGHT----RGINTIRFTPDGRWVVSGG-------FDNVVKVWDLTA 173 (1072)
Q Consensus 106 IafSPdgk~LaSgs~DGsI~IWDlrsg-k~i~~l~~h~----~~VtsIafSPDG~~LvTGS-------~DGsI~IWDl~t 173 (1072)
-.|-.+ +.|+..+ +..|+-|++... .+...+..|. ..|..-..+++.+|++..+ -.|.+.+|..+
T Consensus 108 WkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e- 184 (327)
T d1utca2 108 WKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD- 184 (327)
T ss_dssp EEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-
T ss_pred EEECCC-CEEEEEC-CCCEEEECCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEEC-
T ss_conf 994479-8899991-8816997356999852662321012486389989899998899995713788305888899802-
Q ss_pred CCEEEEEEECCCCEEEEEECCCC---CEEEEEE---CCCEEEEEECCCCC---E------EEEECCC---CCCEEEEEEE
Q ss_conf 91689953048865899985999---6999997---89939999889980---8------8740799---8784799991
Q 001472 174 GKLLHDFKFHEGHIRSIDFHPLE---FLLATGS---ADRTVKFWDLETFE---L------IGSTRPE---VTGVHAITFH 235 (1072)
Q Consensus 174 gk~i~~l~~h~g~ItsLafSPdg---~lLaTgS---~DGtIrIWDl~tgk---~------i~~l~~h---~~~VtsIafS 235 (1072)
.+..+.+.+|.+....+.+..+. .+++.+. ..+.+++.++.... . ...+.+. ..-..++..+
T Consensus 185 r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs 264 (327)
T d1utca2 185 RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS 264 (327)
T ss_dssp TTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE
T ss_pred CCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEE
T ss_conf 28675232034656888707998873099999878987479999868875578887532688777963468847799964
Q ss_pred CCCCEEEE-EECCCEEEEEECCCEEECCCCCCCC
Q ss_conf 79999999-9799499999358722101126887
Q 001472 236 PDGRTLFS-GFDDNLKVYSWEPVICHDSVDMGWS 268 (1072)
Q Consensus 236 PDGk~Las-Gsdg~I~Iwdl~s~~~~~~i~~~~s 268 (1072)
+.-..++. .-.|.+.+||++++.+...-.....
T Consensus 265 ~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~ 298 (327)
T d1utca2 265 EKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE 298 (327)
T ss_dssp TTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC
T ss_conf 3379999996675899997566628999404788
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.055 Score=25.63 Aligned_cols=223 Identities=8% Similarity=-0.048 Sum_probs=124.6
Q ss_pred EEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCE----EEEEEECCCCCEE
Q ss_conf 999998699199998699906999807898827999937998999996-89809999889990----7999816898748
Q 001472 72 LVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGC-MDTNLKIWDIRKKG----CIHTYKGHTRGIN 146 (1072)
Q Consensus 72 ~LatGS~DGsI~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs-~DGsI~IWDlrsgk----~i~~l~~h~~~Vt 146 (1072)
+|+.+. ...|+..++.+......+. ....+..+.|++..+.++-.. ..+.|.-.++.... ....+......+.
T Consensus 3 fLl~s~-~~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~ 80 (266)
T d1ijqa1 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (266)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCEEEEEECCCCCCEEEEC-CCCCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCC
T ss_conf 999978-7718999899985266417-99855999998089999999997997999993578887614899848999854
Q ss_pred EEEECCCCCEEEEE-ECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEE--CCCEEEEEECCCCCEEEEEC
Q ss_conf 99996899999999-6699299999899916899530488658999859996999997--89939999889980887407
Q 001472 147 TIRFTPDGRWVVSG-GFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS--ADRTVKFWDLETFELIGSTR 223 (1072)
Q Consensus 147 sIafSPDG~~LvTG-S~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTgS--~DGtIrIWDl~tgk~i~~l~ 223 (1072)
.+++.+.+..|... ...+.|.+.++........+.........++++|...+|+... ..+.|...++..........
T Consensus 81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~ 160 (266)
T d1ijqa1 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEEEEECCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEECCCCCCEECCCC
T ss_conf 68986426528999548999985764895378887279988336999800394887126997302686368883441200
Q ss_pred CCCCCEEEEEEECCCCEEEEEEC--CCEEEEEECCCEEECCCCCC---CCEEEEEEECCCCEEEEE-ECCCEEEEEECCC
Q ss_conf 99878479999179999999979--94999993587221011268---870456994599999999-8699399998479
Q 001472 224 PEVTGVHAITFHPDGRTLFSGFD--DNLKVYSWEPVICHDSVDMG---WSTLGDLCINDGKLLGCS-FYRNSVGIWVADV 297 (1072)
Q Consensus 224 ~h~~~VtsIafSPDGk~LasGsd--g~I~Iwdl~s~~~~~~i~~~---~s~is~l~spDGklLasg-s~DGsIrIWDids 297 (1072)
........+++++.+..|+.... +.|...+++........... ..+...... +..|..+ ..++.|...+...
T Consensus 161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~ 238 (266)
T d1ijqa1 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 238 (266)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred CCCCEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEE--CCEEEEEECCCCEEEEEECCC
T ss_conf 453201699861335699995289679999989999779999389855664799998--999999989999699999989
Q ss_pred C
Q ss_conf 9
Q 001472 298 S 298 (1072)
Q Consensus 298 ~ 298 (1072)
+
T Consensus 239 g 239 (266)
T d1ijqa1 239 G 239 (266)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.62 E-value=0.075 Score=24.68 Aligned_cols=98 Identities=12% Similarity=0.162 Sum_probs=44.4
Q ss_pred EEEEECCCCCEEEEEEC-CC----EEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC---------------
Q ss_conf 79999379989999968-98----09999889990799981689874899996899999999669---------------
Q 001472 104 TAVEFHPFGEFFASGCM-DT----NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD--------------- 163 (1072)
Q Consensus 104 tsIafSPdgk~LaSgs~-DG----sI~IWDlrsgk~i~~l~~h~~~VtsIafSPDG~~LvTGS~D--------------- 163 (1072)
...+++|++++++.+-. +| .|+++|+.+++.+...- .......+.|.+|+..|+....+
T Consensus 128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~ 206 (430)
T d1qfma1 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL 206 (430)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred CCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCCC-CCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 42585378987999955666721046774167640314422-24323641785799899999762666765443334578
Q ss_pred -CEEEEEECCCCCE--EEEEEECC--CCEEEEEECCCCCEEEEE
Q ss_conf -9299999899916--89953048--865899985999699999
Q 001472 164 -NVVKVWDLTAGKL--LHDFKFHE--GHIRSIDFHPLEFLLATG 202 (1072)
Q Consensus 164 -GsI~IWDl~tgk~--i~~l~~h~--g~ItsLafSPdg~lLaTg 202 (1072)
..+..|.+.+... ...+.... ..+..+..+.++.+++..
T Consensus 207 ~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEE
T ss_conf 63389998898865310022323577257753026876245687
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.40 E-value=0.084 Score=24.34 Aligned_cols=228 Identities=8% Similarity=0.076 Sum_probs=142.1
Q ss_pred CCCEEEEEEC---CCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCE
Q ss_conf 9999999986---9919999869990699980789882799993799899999689809999889990799981689874
Q 001472 69 AEVLVLAGAS---TGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGI 145 (1072)
Q Consensus 69 dg~~LatGS~---DGsI~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~l~~h~~~V 145 (1072)
.++++++--. ...+.|.|+..........- ..-+.-.+|..+.++.-+ ...+.+||+++...+..+. ...+|
T Consensus 31 SDkyicVRe~~~~~~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~-~~e~V 105 (327)
T d1utca2 31 SDKFICIREKVGEQAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDV 105 (327)
T ss_dssp SSSEEEEEEEETTEEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCC
T ss_pred CCCEEEEEECCCCCCEEEEEECCCCCCCEECCC---CHHHHHCCCCCCEEEEEC-CCEEEEEEHHHHHHHCEEE-CCCCC
T ss_conf 587799983258984399998899876331443---616653088875799962-8868998446822111587-68885
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCC-CEEEEEEECC----CCEEEEEECCCCCEEEEEE-------CCCEEEEEEC
Q ss_conf 89999689999999966992999998999-1689953048----8658999859996999997-------8993999988
Q 001472 146 NTIRFTPDGRWVVSGGFDNVVKVWDLTAG-KLLHDFKFHE----GHIRSIDFHPLEFLLATGS-------ADRTVKFWDL 213 (1072)
Q Consensus 146 tsIafSPDG~~LvTGS~DGsI~IWDl~tg-k~i~~l~~h~----g~ItsLafSPdg~lLaTgS-------~DGtIrIWDl 213 (1072)
.--.|-.+. .|+... +..|+-|++... .+.+.|..|. ..|.....+++.++++..+ -.|.+.+|+.
T Consensus 106 vfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~ 183 (327)
T d1utca2 106 TFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV 183 (327)
T ss_dssp CEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEET
T ss_pred EEEEECCCC-EEEEEC-CCCEEEECCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEE
T ss_conf 799944798-899991-881699735699985266232101248638998989999889999571378830588889980
Q ss_pred CCCCEEEEECCCCCCEEEEEEECCC---CEEEEEEC----CCEEEEEECCCEE------ECCC-------CCCCCEEEEE
Q ss_conf 9980887407998784799991799---99999979----9499999358722------1011-------2688704569
Q 001472 214 ETFELIGSTRPEVTGVHAITFHPDG---RTLFSGFD----DNLKVYSWEPVIC------HDSV-------DMGWSTLGDL 273 (1072)
Q Consensus 214 ~tgk~i~~l~~h~~~VtsIafSPDG---k~LasGsd----g~I~Iwdl~s~~~------~~~i-------~~~~s~is~l 273 (1072)
+.. .-..+.+|.+....+.+..+. ..++.+.. +.+.+.++..... .+.. .....++...
T Consensus 184 er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamq 262 (327)
T d1utca2 184 DRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ 262 (327)
T ss_dssp TTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEE
T ss_pred CCC-CCCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEE
T ss_conf 228-6752320346568887079988730999998789874799998688755788875326887779634688477999
Q ss_pred EECCCCEEEEEECCCEEEEEECCCCCEEEEE
Q ss_conf 9459999999986993999984799324431
Q 001472 274 CINDGKLLGCSFYRNSVGIWVADVSHVEPYG 304 (1072)
Q Consensus 274 ~spDGklLasgs~DGsIrIWDids~~l~~~~ 304 (1072)
.+..-.++..-+.-|.+++||+.++..-...
T Consensus 263 vs~kygiiyviTK~G~i~lyDleTgt~i~~n 293 (327)
T d1utca2 263 ISEKHDVVFLITKYGYIHLYDLETGTCIYMN 293 (327)
T ss_dssp EETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EECCCCEEEEEECCCEEEEEECCCCCEEEEE
T ss_conf 6433799999966758999975666289994
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.66 E-value=0.12 Score=23.40 Aligned_cols=65 Identities=11% Similarity=0.013 Sum_probs=32.9
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEECCC--------CCE-EEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEE
Q ss_conf 99999789909999879994279950799--------894-79999389999999986991999986999069998
Q 001472 30 FLITGGDDQKVNLWAIGKPTALMSLCGLS--------SPV-DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTL 96 (1072)
Q Consensus 30 lLaTGs~DGtI~IWDi~t~~~i~sl~~hs--------~~I-tsLafSPdg~~LatGS~DGsI~IWDl~tgk~i~tl 96 (1072)
.|++++.++.|.-.|..+++.+..+.... ..+ ..+++. +..++.++.++.+.-.|..+++.+...
T Consensus 70 ~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~ 143 (582)
T d1flga_ 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEE--CCCEEEECCCCEEEEECCCCCCEEEEE
T ss_conf 99996899959999689998688876889876553334446774586--781588648874998116666302111
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.60 E-value=0.16 Score=22.35 Aligned_cols=113 Identities=15% Similarity=0.146 Sum_probs=66.5
Q ss_pred CCEEEEEECCCCCEEEEEEC-C----CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC------------
Q ss_conf 89479999389999999986-9----919999869990699980789882799993799899999689------------
Q 001472 59 SPVDSVAFDSAEVLVLAGAS-T----GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD------------ 121 (1072)
Q Consensus 59 ~~ItsLafSPdg~~LatGS~-D----GsI~IWDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~D------------ 121 (1072)
-.+...+++|++++++.+-. + ..|+++|+.+++.+...- .......+.|.++++.|+....+
T Consensus 125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~ 203 (430)
T d1qfma1 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (430)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred CEECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCCC-CCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCC
T ss_conf 13342585378987999955666721046774167640314422-24323641785799899999762666765443334
Q ss_pred ----CEEEEEECCCCEE--EEEEECCC--CCEEEEEECCCCCEEEEEEC---CC--EEEEEECC
Q ss_conf ----8099998899907--99981689--87489999689999999966---99--29999989
Q 001472 122 ----TNLKIWDIRKKGC--IHTYKGHT--RGINTIRFTPDGRWVVSGGF---DN--VVKVWDLT 172 (1072)
Q Consensus 122 ----GsI~IWDlrsgk~--i~~l~~h~--~~VtsIafSPDG~~LvTGS~---DG--sI~IWDl~ 172 (1072)
..|+.|.+.+... ...+.... ..+..+..+.++++++.... +. .+.+.|+.
T Consensus 204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~ 267 (430)
T d1qfma1 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ 267 (430)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEEECC
T ss_conf 5786338999889886531002232357725775302687624568764367764799995177
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.50 E-value=0.22 Score=21.50 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=12.1
Q ss_pred ECCCCEEEEEECCC-----EEEEEECCCC
Q ss_conf 45999999998699-----3999984799
Q 001472 275 INDGKLLGCSFYRN-----SVGIWVADVS 298 (1072)
Q Consensus 275 spDGklLasgs~DG-----sIrIWDids~ 298 (1072)
..++++++.|+.++ .+.+||+...
T Consensus 240 ~~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 240 VHQGRIYVLGGYDGHTFLDSVECYDPDTD 268 (288)
T ss_dssp EETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred EECCEEEEEECCCCCEECCEEEEEECCCC
T ss_conf 99999999956799954563999979999
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.39 E-value=0.27 Score=20.80 Aligned_cols=134 Identities=11% Similarity=0.058 Sum_probs=60.3
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCC-----------CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 47999938999999998699199998699-----------9069998078988279999379989999968980999988
Q 001472 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEE-----------SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDI 129 (1072)
Q Consensus 61 ItsLafSPdg~~LatGS~DGsI~IWDl~t-----------gk~i~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDl 129 (1072)
..-++.++...++++|+.++ +.|..... ........ -..|..++|+ ++.+++.. ++.+..++.
T Consensus 39 ~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs--~d~l~v~~-~~~l~~~~~ 112 (381)
T d1xipa_ 39 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFH--GDQVLVST-RNALYSLDL 112 (381)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEE--TTEEEEEE-SSEEEEEES
T ss_pred CCEEEEECCCCEEEEECCCE-EEEEEHHHHHHHHHCCCCCCCCEECCC--CCCEEEEEEE--CCEEEEEE-CCCEEEEEE
T ss_conf 42689957778899988997-799998997878655678886234168--9986899861--89899995-897899985
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE-----ECCCCEEEEEECCCCCEEEEE
Q ss_conf 9990799981689874899996899999999669929999989991689953-----048865899985999699999
Q 001472 130 RKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK-----FHEGHIRSIDFHPLEFLLATG 202 (1072)
Q Consensus 130 rsgk~i~~l~~h~~~VtsIafSPDG~~LvTGS~DGsI~IWDl~tgk~i~~l~-----~h~g~ItsLafSPdg~lLaTg 202 (1072)
..-...........++..+.+.|. .++....++.+.++++..++...... .-.+...+++|++.+..++++
T Consensus 113 ~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~ 188 (381)
T d1xipa_ 113 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAW 188 (381)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred ECCCCCCCCCCCCCCCCCEECCCC--EEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCCCEEEEEECCCEEEEEE
T ss_conf 100145446554556111021886--0699965897789994158644444775238733892699996896899981
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.41 E-value=0.43 Score=19.43 Aligned_cols=177 Identities=14% Similarity=0.075 Sum_probs=90.7
Q ss_pred CCEEEEEEECCCCCEEEEEECCCEEEEEECC-----------CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 9869999911899399999789909999879-----------99427995079989479999389999999986991999
Q 001472 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIG-----------KPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1072)
Q Consensus 16 g~VtsIafSPdg~~lLaTGs~DGtI~IWDi~-----------t~~~i~sl~~hs~~ItsLafSPdg~~LatGS~DGsI~I 84 (1072)
.....+++++.. .+++.|+.++ +.|.... ......... -..|..++|+.+ .+++. .++.+..
T Consensus 37 ~~~~LLAVsn~~-GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~-~~~~l~~ 109 (381)
T d1xipa_ 37 ASLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVS-TRNALYS 109 (381)
T ss_dssp SCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEE-ESSEEEE
T ss_pred CCCCEEEEECCC-CEEEEECCCE-EEEEEHHHHHHHHHCCCCCCCCEECCC--CCCEEEEEEECC--EEEEE-ECCCEEE
T ss_conf 444268995777-8899988997-799998997878655678886234168--998689986189--89999-5897899
Q ss_pred EECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEE-----CCCCCEEEEEECCCCCEEEE
Q ss_conf 9869990699980789882799993799899999689809999889990799981-----68987489999689999999
Q 001472 85 WDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK-----GHTRGINTIRFTPDGRWVVS 159 (1072)
Q Consensus 85 WDl~tgk~i~tl~~h~~~VtsIafSPdgk~LaSgs~DGsI~IWDlrsgk~i~~l~-----~h~~~VtsIafSPDG~~LvT 159 (1072)
++...-............+..+.++|. .++....+|.+.++++..+....... .....+.+++|++.|..+++
T Consensus 110 ~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~ 187 (381)
T d1xipa_ 110 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFA 187 (381)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEE
T ss_pred EEEECCCCCCCCCCCCCCCCCEECCCC--EEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCCCEEEEEECCCEEEEE
T ss_conf 985100145446554556111021886--069996589778999415864444477523873389269999689689998
Q ss_pred EECCCEEEE-EECCCCCEEEEEEECCCCEEEEEECCCCCEEEEE
Q ss_conf 966992999-9989991689953048865899985999699999
Q 001472 160 GGFDNVVKV-WDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATG 202 (1072)
Q Consensus 160 GS~DGsI~I-WDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTg 202 (1072)
+..+ ...+ -++.....+.........+.++.|-.+..++++-
T Consensus 188 ~~g~-~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 188 WRNG-EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EETT-EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred ECCC-CEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEE
T ss_conf 1898-203656778820157886778616689995175699998
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.76 E-value=0.58 Score=18.54 Aligned_cols=11 Identities=9% Similarity=0.084 Sum_probs=6.0
Q ss_pred EEEEEECCCCC
Q ss_conf 09999879994
Q 001472 39 KVNLWAIGKPT 49 (1072)
Q Consensus 39 tI~IWDi~t~~ 49 (1072)
.+.+||+.+.+
T Consensus 20 ~~~~yd~~t~~ 30 (288)
T d1zgka1 20 YLEAYNPSNGT 30 (288)
T ss_dssp CEEEEETTTTE
T ss_pred EEEEEECCCCE
T ss_conf 59999899996
|