Citrus Sinensis ID: 001475
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1071 | 2.2.26 [Sep-21-2011] | |||||||
| Q7TPQ3 | 1674 | E3 ubiquitin-protein liga | yes | no | 0.391 | 0.250 | 0.391 | 6e-87 | |
| Q149N8 | 1683 | E3 ubiquitin-protein liga | yes | no | 0.391 | 0.248 | 0.391 | 8e-87 | |
| Q9FNI6 | 1029 | Putative SWI/SNF-related | no | no | 0.226 | 0.236 | 0.317 | 6e-35 | |
| Q9FIY7 | 1277 | Putative SWI/SNF-related | no | no | 0.226 | 0.190 | 0.316 | 1e-32 | |
| Q6PCN7 | 1003 | Helicase-like transcripti | no | no | 0.263 | 0.281 | 0.307 | 7e-31 | |
| Q9UTL9 | 1375 | Uncharacterized ATP-depen | yes | no | 0.298 | 0.232 | 0.307 | 7e-29 | |
| Q9FF61 | 881 | Putative SWI/SNF-related | no | no | 0.253 | 0.308 | 0.295 | 7e-28 | |
| Q95216 | 1005 | Helicase-like transcripti | no | no | 0.228 | 0.243 | 0.307 | 1e-27 | |
| Q14527 | 1009 | Helicase-like transcripti | no | no | 0.222 | 0.235 | 0.3 | 6e-27 | |
| Q4PGG5 | 1387 | DNA repair protein RAD5 O | N/A | no | 0.387 | 0.299 | 0.244 | 3e-26 |
| >sp|Q7TPQ3|SHPRH_MOUSE E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1 SV=1 | Back alignment and function desciption |
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Score = 323 bits (827), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 185/472 (39%), Positives = 250/472 (52%), Gaps = 53/472 (11%)
Query: 162 RVECICGAVSE-SRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMT 220
R ECICG + K + VQC C WQHA CV Y + K + +
Sbjct: 649 RFECICGEFDQIGHKPR---VQCLKCHLWQHAKCVNYEEKNLKVKPFY------------ 693
Query: 221 NIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIY 280
C C +E PV+T ATLI+ P+ I QW EI RH R SL+ +Y
Sbjct: 694 ----------CPHCLVAME----PVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVY 739
Query: 281 EGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG--DRRFMRFQKRYPV 338
+G + L DIV+ TYDVL+ +L++ + H D R +R QKRY
Sbjct: 740 QGVKKHGFLQPHF-----LAEQDIVIITYDVLRSELNYVNIPHSNSEDGRRLRNQKRYMA 794
Query: 339 IPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 398
IP+ L + WWRICLDEAQMVE A EMA RL +RWCI+GTP+QR L+DL+GL+
Sbjct: 795 IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 854
Query: 399 FLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEEC 458
FL P+ + WWI ++ PY + + + F +IM RS+K V D++Q+PPQ E
Sbjct: 855 FLGIEPYCVKHWWIRLLYHPYCKKNP---QHLYSFIAKIMWRSAKKDVIDQIQIPPQTEE 911
Query: 459 VSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEA 518
+ WL FSP+E HFY QHE C A ++++ D LK + +
Sbjct: 912 MHWLHFSPVERHFYHRQHEVCCQDAIVKLRKISDWALKLSS-------------LDRRTV 958
Query: 519 AKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMAL 578
+ +L LL+LRQACCHPQ LQ+S ++M+E+L L K E EEA R+LV AL
Sbjct: 959 SSILYPLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCAL 1018
Query: 579 NGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEIL 630
NGLAGI +I+ + A LY+E + EEH + D L +H HNL E+L
Sbjct: 1019 NGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELL 1070
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E3 ubiquitin-protein ligase involved in DNA repair. Upon genotoxic stress, accepts ubiquitin from the UBE2N-UBE2V2 E2 complex and transfers it to 'Lys-164' of PCNA which had been monoubiquitinated by UBE2A/B-RAD18, promoting the formation of non-canonical poly-ubiquitin chains linked through 'Lys-63'. Mus musculus (taxid: 10090) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q149N8|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF PE=1 SV=1 | Back alignment and function description |
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| >sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2 | Back alignment and function description |
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| >sp|Q4PGG5|RAD5_USTMA DNA repair protein RAD5 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=RAD5 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1071 | ||||||
| 224127888 | 1320 | chromatin remodeling complex subunit [Po | 0.971 | 0.787 | 0.709 | 0.0 | |
| 359486454 | 1704 | PREDICTED: E3 ubiquitin-protein ligase S | 0.968 | 0.608 | 0.680 | 0.0 | |
| 297736470 | 1717 | unnamed protein product [Vitis vinifera] | 0.952 | 0.594 | 0.641 | 0.0 | |
| 449499151 | 1520 | PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu | 0.976 | 0.688 | 0.639 | 0.0 | |
| 449441236 | 1520 | PREDICTED: E3 ubiquitin-protein ligase S | 0.976 | 0.688 | 0.639 | 0.0 | |
| 240254615 | 1664 | RING-finger, DEAD-like helicase, PHD and | 0.957 | 0.616 | 0.618 | 0.0 | |
| 255559737 | 1588 | snf2 histone linker phd ring helicase, p | 0.776 | 0.523 | 0.736 | 0.0 | |
| 297827713 | 1635 | SNF2 domain-containing protein [Arabidop | 0.932 | 0.611 | 0.616 | 0.0 | |
| 357490295 | 1764 | ATP-dependent helicase, putative [Medica | 0.970 | 0.589 | 0.590 | 0.0 | |
| 356500801 | 1600 | PREDICTED: E3 ubiquitin-protein ligase S | 0.907 | 0.607 | 0.607 | 0.0 |
| >gi|224127888|ref|XP_002329202.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222870983|gb|EEF08114.1| chromatin remodeling complex subunit [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1533 bits (3968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 747/1053 (70%), Positives = 866/1053 (82%), Gaps = 13/1053 (1%)
Query: 18 MKPLSDQKPMLEEDLPDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPM 77
+KP S PMLE+DLPDLLP LRPYQRRAA+WMVQ+EKG+S SS +ERSQFFSPLCMP+
Sbjct: 275 IKP-SKSDPMLEDDLPDLLPTLRPYQRRAAHWMVQQEKGES--SSVKERSQFFSPLCMPV 331
Query: 78 DFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDD 137
DFLDT S +FYNPFSG++S P+++ YV GGILADEMGLGKTVELLACI AHRK SDD
Sbjct: 332 DFLDTCSKMFYNPFSGNVSFHPEFSPPYVSGGILADEMGLGKTVELLACILAHRKSTSDD 391
Query: 138 SIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGY 197
+ Q T +QK+NL+RLKRERVEC+CGAVS+S KY+GLWVQCDICDAWQHADCVGY
Sbjct: 392 GSVVAPTWQNTGNQKINLKRLKRERVECVCGAVSDSYKYRGLWVQCDICDAWQHADCVGY 451
Query: 198 SPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAP 257
SPRGKK+ S + +KH R K + V RDGEH+CQ C ELIE D+P+ATGATLIVCPAP
Sbjct: 452 SPRGKKKMSVDDEQKH-RNKTTISYVERDGEHVCQMCSELIEVADTPIATGATLIVCPAP 510
Query: 258 ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLS 317
IL QW +EITRHTRPGSLKT +YEG R++SLS+T ++DI +LV ADIVLTTYDVLKEDL
Sbjct: 511 ILPQWHSEITRHTRPGSLKTYVYEGVRDTSLSNTFVVDIGQLVNADIVLTTYDVLKEDLL 570
Query: 318 HDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKH 377
HDSDRH GDR +RFQKRYPV PT+LTRIFWWR+CLDEAQMVESNAAAATEMALRL KH
Sbjct: 571 HDSDRHGGDRHILRFQKRYPVTPTILTRIFWWRVCLDEAQMVESNAAAATEMALRLSTKH 630
Query: 378 RWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEI 437
RWCITGTPIQRKLDDLYGLLRFLK+SPF++SRWWI+VIRDPYE D AMEFTHKFFK+I
Sbjct: 631 RWCITGTPIQRKLDDLYGLLRFLKASPFNVSRWWIDVIRDPYERRDADAMEFTHKFFKQI 690
Query: 438 MCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKR 497
M RSSK+HV+DELQLPPQEECVSWLTFS IE+HFYQ QHETCV YAREVI KD+++KR
Sbjct: 691 MWRSSKIHVADELQLPPQEECVSWLTFSAIEKHFYQMQHETCVSYAREVIGSFKDDVVKR 750
Query: 498 NVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILM 557
VPG S+DA +P+ITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSP++M+EILM
Sbjct: 751 KVPGCVSTDASTDPLITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPMTMEEILM 810
Query: 558 VLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPL 617
V +GK KIEGEEALRKLV+ALN LAGIA++E+N QAVSLYKEA+A+ EEH EDFRLDPL
Sbjct: 811 VFVGKMKIEGEEALRKLVVALNALAGIAILEQNFPQAVSLYKEALALSEEHLEDFRLDPL 870
Query: 618 LNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREE 677
LNIH+HHNL +IL +V + +TE+ N Q G SEKA KI+ ETCD N K Q+ S E
Sbjct: 871 LNIHIHHNLADILALVMDHSTEVPSNGQQLHGNSEKASKINKSETCDLNDAKKQKAS-GE 929
Query: 678 NSDFT-DAEDPSGHLSDLSENGFNGDRKSDCC--VSSSSFDDASLITVCENLKQKYLSGF 734
+SDFT DA G+ DLSEN G++K + +SS+SF L T CEN KQKYLS F
Sbjct: 930 DSDFTIDA----GNSLDLSENCSVGNKKGNNNHDMSSTSFSTQYLRTACENFKQKYLSVF 985
Query: 735 SVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISG 794
S KLS AQ +F KSY QVCNA +R+ ++ WWL+AL+HAE NKD + ELIRKIEEA+SG
Sbjct: 986 SSKLSAAQLDFNKSYTQVCNAFGERKNLHTVWWLDALNHAEQNKDSTGELIRKIEEAVSG 1045
Query: 795 SLNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRM 854
+LN SR+ R ASR RSI+GL YHI + LDQLEASR+TLLDR+LEIDQTM PKEED++R+
Sbjct: 1046 TLNNSRSSRIASRLRSITGLKYHIHTHLDQLEASRQTLLDRILEIDQTMANPKEEDIERV 1105
Query: 855 RHCRICYGVGDGPICVHCELDESFQDYEARLFRLKKSQGD-IASAEEAVDLQKKNSSLNR 913
RHCRIC + DGP CVHCEL+ESFQ+YEARLFRL K G I SAEEAV+LQK+NS NR
Sbjct: 1106 RHCRICQAIDDGPTCVHCELEESFQEYEARLFRLNKLHGGIITSAEEAVNLQKRNSERNR 1165
Query: 914 FYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAI 973
+YW L + KN SS NEE K+R ETV+VSKSPSELEVILGVIK+YCK QL EA+
Sbjct: 1166 YYWNLDRQKKNLLPSSDFNEESKKRKTGETVMVSKSPSELEVILGVIKSYCKAQLENEAV 1225
Query: 974 SASSKQLHILEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSVDALSP 1033
SA+S Q+HILE MRKEY +ARSLA AQAQ LRAHDE++MAT RLHL+E++NDTS+DAL
Sbjct: 1226 SAASLQIHILEGMRKEYGHARSLAVAQAQLLRAHDELKMATARLHLRENENDTSMDALGE 1285
Query: 1034 DELASASVTNSSEKFISMTLLSQVKGKLRYLKV 1066
DEL SASV +S+EKF+S+ LLS KGKLRYLKV
Sbjct: 1286 DELESASVLHSNEKFMSLNLLSHTKGKLRYLKV 1318
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486454|ref|XP_003633446.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297736470|emb|CBI25341.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449499151|ref|XP_004160739.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SHPRH-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449441236|ref|XP_004138388.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|240254615|ref|NP_181609.4| RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana] gi|330254782|gb|AEC09876.1| RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|255559737|ref|XP_002520888.1| snf2 histone linker phd ring helicase, putative [Ricinus communis] gi|223540019|gb|EEF41597.1| snf2 histone linker phd ring helicase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|297827713|ref|XP_002881739.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297327578|gb|EFH57998.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|357490295|ref|XP_003615435.1| ATP-dependent helicase, putative [Medicago truncatula] gi|355516770|gb|AES98393.1| ATP-dependent helicase, putative [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356500801|ref|XP_003519219.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1071 | ||||||
| TAIR|locus:2064786 | 1664 | AT2G40770 [Arabidopsis thalian | 0.605 | 0.390 | 0.667 | 1.8e-238 | |
| UNIPROTKB|E1C5L6 | 1682 | SHPRH "Uncharacterized protein | 0.389 | 0.247 | 0.398 | 5.8e-117 | |
| UNIPROTKB|E1C615 | 1682 | SHPRH "Uncharacterized protein | 0.389 | 0.247 | 0.398 | 5.8e-117 | |
| UNIPROTKB|E1BLB1 | 1688 | SHPRH "Uncharacterized protein | 0.351 | 0.222 | 0.422 | 5.7e-112 | |
| MGI|MGI:1917581 | 1674 | Shprh "SNF2 histone linker PHD | 0.351 | 0.224 | 0.417 | 2.2e-110 | |
| UNIPROTKB|E2R8G0 | 1685 | SHPRH "Uncharacterized protein | 0.351 | 0.223 | 0.415 | 3.4e-109 | |
| UNIPROTKB|Q149N8 | 1683 | SHPRH "E3 ubiquitin-protein li | 0.351 | 0.223 | 0.412 | 5.3e-108 | |
| UNIPROTKB|F1S736 | 1688 | SHPRH "Uncharacterized protein | 0.436 | 0.276 | 0.375 | 1.7e-106 | |
| RGD|1310342 | 1701 | Shprh "SNF2 histone linker PHD | 0.351 | 0.221 | 0.397 | 1.1e-101 | |
| UNIPROTKB|K4DI94 | 1687 | SHPRH "SNF2 histone linker PHD | 0.351 | 0.222 | 0.410 | 1.2e-101 |
| TAIR|locus:2064786 AT2G40770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2299 (814.3 bits), Expect = 1.8e-238, P = 1.8e-238
Identities = 445/667 (66%), Positives = 527/667 (79%)
Query: 40 RPYQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSLSLSP 99
RPYQRRAAYWMVQRE+GD PL + + FLD+ + +F NPFSG++SL+P
Sbjct: 289 RPYQRRAAYWMVQRERGDPITLGDKEDNQFISPLSISVGFLDSATKMFLNPFSGNISLTP 348
Query: 100 DYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLK 159
+Y S + GGILADEMGLGKTVELLACIF+HRKPA D+ I + VTD LRRLK
Sbjct: 349 EYFSPRIQGGILADEMGLGKTVELLACIFSHRKPAEDE-ISVSNGSSVTDVLNAGLRRLK 407
Query: 160 RERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFEL-KKHTRKK- 217
RERVECICGAVSES KYKG+WVQCD+CDAWQHADCVGYSP+GK ++ + + +K ++KK
Sbjct: 408 RERVECICGAVSESHKYKGVWVQCDLCDAWQHADCVGYSPKGKGKKDSQHIDEKASQKKS 467
Query: 218 --DMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSL 275
D T I+VR+GE+ICQ C EL++ T SP++TGATLIVCPAPIL QW +EITRHTR GSL
Sbjct: 468 KKDATEIIVREGEYICQMCSELLQVTASPISTGATLIVCPAPILPQWHSEITRHTRLGSL 527
Query: 276 KTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKR 335
TCIYEG RN+SLS+ ++DI+EL+ ADIVLTTYDVLKEDL+HD DRH+GDR +RFQKR
Sbjct: 528 ITCIYEGVRNASLSEEPMIDITELLNADIVLTTYDVLKEDLTHDFDRHDGDRHCLRFQKR 587
Query: 336 YPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYG 395
YPVIPT LTRIFWWRICLDEAQMVESNAAAATEMALRLY KHRWCITGTPIQRKLDDL+G
Sbjct: 588 YPVIPTPLTRIFWWRICLDEAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFG 647
Query: 396 LLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQ 455
LL+FLK++PF +SRWWIEVIRDPYE D AMEFTHKFFK++M RSSKVHV+DELQLPPQ
Sbjct: 648 LLKFLKANPFDVSRWWIEVIRDPYERRDTKAMEFTHKFFKQVMWRSSKVHVADELQLPPQ 707
Query: 456 EECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITH 515
EECVSWL FS IEEHFY QH+TCV YAREVI+ LK +ILKR GH SSD NP++TH
Sbjct: 708 EECVSWLKFSAIEEHFYSRQHDTCVSYAREVIETLKRDILKR---GHTSSD---NPLVTH 761
Query: 516 AEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLV 575
AEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSP++M+EILMVL+ KT+ EGEEALR L+
Sbjct: 762 AEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLVKKTQSEGEEALRVLI 821
Query: 576 MALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVAN 635
+ALNG+A IA++++ S+AVSLYKEA+++ EEH+EDFRLDPLLNIH+ HNL EILPM +
Sbjct: 822 VALNGIAAIAMLKQEFSEAVSLYKEALSITEEHAEDFRLDPLLNIHILHNLAEILPMAKS 881
Query: 636 CATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLS 695
+LS + G E KI + A K QR++ E+ +E +
Sbjct: 882 YGGKLSAS-----GRPET--KIDVKDDDHHRASKRQRINELESLTHDSSETVHQREAIAP 934
Query: 696 ENGFNGD 702
+NG D
Sbjct: 935 DNGLKKD 941
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| UNIPROTKB|E1C5L6 SHPRH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C615 SHPRH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BLB1 SHPRH "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| MGI|MGI:1917581 Shprh "SNF2 histone linker PHD RING helicase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2R8G0 SHPRH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q149N8 SHPRH "E3 ubiquitin-protein ligase SHPRH" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1S736 SHPRH "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| RGD|1310342 Shprh "SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|K4DI94 SHPRH "SNF2 histone linker PHD RING helicase, isoform CRA_a" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | CHR938 | chromatin remodeling complex subunit (1320 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1071 | |||
| pfam00176 | 301 | pfam00176, SNF2_N, SNF2 family N-terminal domain | 1e-38 | |
| COG0553 | 866 | COG0553, HepA, Superfamily II DNA/RNA helicases, S | 2e-14 | |
| PLN03142 | 1033 | PLN03142, PLN03142, Probable chromatin-remodeling | 5e-09 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 3e-05 | |
| smart00249 | 47 | smart00249, PHD, PHD zinc finger | 3e-04 | |
| pfam00628 | 51 | pfam00628, PHD, PHD-finger | 6e-04 | |
| pfam00176 | 301 | pfam00176, SNF2_N, SNF2 family N-terminal domain | 0.001 |
| >gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 1e-38
Identities = 77/300 (25%), Positives = 118/300 (39%), Gaps = 60/300 (20%)
Query: 247 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVL 306
G TL+VCP L W E + +L+ +Y G M L D+V+
Sbjct: 48 RGPTLVVCPLSTLHNWLNEFEKW--APALRVVVYHGDGRERSKLRQSM-AKRLDTYDVVI 104
Query: 307 TTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAA 366
TTY+VL++D S ++ + W R+ LDEA ++++ +
Sbjct: 105 TTYEVLRKDKKLLSLLNKVE---------------------WDRVVLDEAHRLKNSKSKL 143
Query: 367 TEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPY------- 419
+ +L ++R +TGTPIQ L++L+ LL FL+ PF + + E P
Sbjct: 144 YKALKKLKTRNRLLLTGTPIQNNLEELWALLNFLRPGPFGSFKVFEEWFNIPIANTADNK 203
Query: 420 ----ENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 475
E G G HK K + R +K V E LPP+ E V + S + Y+
Sbjct: 204 NKNLEKGKEGINRL-HKLLKPFLLRRTKDDV--EKSLPPKTEHVLYCNLSDEQRKLYK-- 258
Query: 476 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 535
+ L R A N I LLN +++LR+ C HP
Sbjct: 259 ------------KLLTKR---RLALSFAVEGGEKNVGIAS-----LLNLIMQLRKICNHP 298
|
This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301 |
| >gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|214584 smart00249, PHD, PHD zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|201356 pfam00628, PHD, PHD-finger | Back alignment and domain information |
|---|
| >gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1071 | |||
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 100.0 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 100.0 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 100.0 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 100.0 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 100.0 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 100.0 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 100.0 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 100.0 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 100.0 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 100.0 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 100.0 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 100.0 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 100.0 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 100.0 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 100.0 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 100.0 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 100.0 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 100.0 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 100.0 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 100.0 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 100.0 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.92 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.79 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.49 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.34 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.31 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.31 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.19 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.11 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.0 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 98.99 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 98.76 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 98.69 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 98.67 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 98.57 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 98.56 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 98.49 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 98.44 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 98.38 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 98.34 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 98.32 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 98.31 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 98.29 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 98.28 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 98.22 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 98.21 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 98.2 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 98.16 | |
| PTZ00424 | 401 | helicase 45; Provisional | 98.15 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 98.13 | |
| PTZ00110 | 545 | helicase; Provisional | 98.11 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 98.09 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 98.07 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 98.05 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 98.04 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 98.02 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 97.97 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 97.97 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 97.96 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 97.89 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 97.89 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 97.8 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 97.69 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 97.67 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 97.67 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 97.67 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 97.61 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 97.57 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 97.51 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 97.48 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 97.47 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 97.29 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 97.28 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 97.23 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 97.15 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 97.11 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 97.06 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 97.02 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 96.9 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 96.88 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 96.32 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 96.18 | |
| PF11496 | 297 | HDA2-3: Class II histone deacetylase complex subun | 96.11 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 95.95 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 95.85 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 95.84 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 95.61 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 95.61 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 95.13 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 95.01 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 94.35 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 94.13 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 94.09 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 94.07 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 94.03 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 93.09 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 93.07 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 93.0 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 92.94 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 92.85 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 92.85 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 92.84 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 92.78 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 92.71 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 92.65 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 92.6 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 92.53 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 91.54 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 90.13 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 89.57 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 89.5 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 89.04 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 88.28 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 88.06 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 87.45 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 87.36 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 87.2 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 86.69 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 86.24 | |
| KOG1131 | 755 | consensus RNA polymerase II transcription initiati | 85.33 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 85.26 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 85.1 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 84.82 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 84.76 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 84.64 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 83.24 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 82.13 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 81.94 |
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-85 Score=784.74 Aligned_cols=888 Identities=28% Similarity=0.334 Sum_probs=693.7
Q ss_pred hhhhcCCCCCCCCCccCCCCCcCCCChHHHHHHHHHHHHhhhCCCCC------CchhhhccccCCCcccccccCCCccee
Q 001475 14 WQGFMKPLSDQKPMLEEDLPDLLPLLRPYQRRAAYWMVQREKGDSAS------SSERERSQFFSPLCMPMDFLDTYSTLF 87 (1071)
Q Consensus 14 ~~~~~~p~~~~~~~~~~~~p~L~~~LrpyQ~~av~WMl~rE~~~~~~------~~~~~~~~~~~plw~~~~~~~~~~~~y 87 (1071)
++.+|+| ..........+..+.+++|+||.+++.||.+||..-... .....+.+..-++-.++.+.+.+
T Consensus 222 ~~~~i~~-l~~s~~~~D~~~~~~~~~r~~~~r~~~~~~~~~~e~~~~s~~~It~~~~~di~~~~~~~l~~~~~~~~---- 296 (1394)
T KOG0298|consen 222 EKHRITV-LVESERSLDLIKRFQSQLRKYQQRTVSWMPSREQEYTQVSANFITLHLIDDITRVFKLKLCFQFYSFE---- 296 (1394)
T ss_pred hhhhccc-cchhccCchHHHHhhhhccHHHHHHHHhccccchhhhhccccccccccccchHHHhhhccceeccccc----
Confidence 3445666 444445555567789999999999999999999854221 11111111111111111111111
Q ss_pred eeccCCcccCCCCCCCCCccCceeecCCCCCHHHHHHHHHHHccCCCCCCccccccccccchhhhhHHHHhhhhhhhhhc
Q 001475 88 YNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECIC 167 (1071)
Q Consensus 88 ~n~~tg~~~~~~~~~~~~~rGGILADEMGLGKTvq~LalIl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~c~c 167 (1071)
.+ -+..+.+.||.+|||||||||++-+|++..|+.+.. .+.......+.|.|
T Consensus 297 ----~~------l~~e~l~~~~t~~de~gl~k~~E~~a~~~~n~~p~~------------------~~~~s~~~~~~~~~ 348 (1394)
T KOG0298|consen 297 ----EE------LPKESLSPGGTLADEMGLGKTVEFLAMLTSNRRPPD------------------SYRNSYLHQRLEEY 348 (1394)
T ss_pred ----cc------chhccCCCcchHHHHhhhHHHHHHHHHHhccCCCcc------------------cccchHHHHHHHHH
Confidence 11 112234569999999999999999999999887642 12334556678899
Q ss_pred ccccccccccccccccccccccccccccccCCCCCCccchhhhhhhc--ccccc--ccccccCCccccchhhhhhhccCC
Q 001475 168 GAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHT--RKKDM--TNIVVRDGEHICQWCDELIEATDS 243 (1071)
Q Consensus 168 ~~~~~~~~~~g~~v~c~~c~~w~h~~cv~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~C~~c~~~~~~~~~ 243 (1071)
+...+...+.+.|++|..|..|.+++-.+.-. ++. +|+.. .........+.|..|+........
T Consensus 349 ~~~~e~~~~r~nq~~~~~~~~~~~~g~~~~~a------------de~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n 416 (1394)
T KOG0298|consen 349 SDEVELKRSRINQKDEVLCSGDKKHGKRVQCA------------DEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGEN 416 (1394)
T ss_pred hhhhHhHHhHhhhhhHHhhcCCccCCcceeeh------------hhhhccchHHHHHHHHhcccccchhhhhHHHhcccc
Confidence 99999989999999999999988864110000 111 11111 122334556667777888888888
Q ss_pred CCCCCcEEEEeCchhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCCcEEEEeHHHHHhhcccCCCCC
Q 001475 244 PVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 323 (1071)
Q Consensus 244 ~~~~~~tLIV~P~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~ 323 (1071)
+..+|+||||||.+++.||-.||.+|+++ .++|+.|.|.++... ..+..+.+||||+|||++|+.++.+. ..
T Consensus 417 ~~~tgaTLII~P~aIl~QW~~EI~kH~~~-~lKv~~Y~Girk~~~-----~~~~el~~yDIVlTtYdiLr~El~ht--e~ 488 (1394)
T KOG0298|consen 417 LVETGATLIICPNAILMQWFEEIHKHISS-LLKVLLYFGIRKTFW-----LSPFELLQYDIVLTTYDILRNELYHT--ED 488 (1394)
T ss_pred eeecCceEEECcHHHHHHHHHHHHHhccc-cceEEEEechhhhcc-----cCchhhhccCEEEeehHHHHhHhhcc--cc
Confidence 99999999999999999999999999953 479999999977543 34578899999999999999999886 55
Q ss_pred cchhhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHhcccCceEEEeCcCCCCChhhhhccccccCCC
Q 001475 324 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSS 403 (1071)
Q Consensus 324 ~~~~~~~r~~kr~~~~~s~L~~i~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~ 403 (1071)
.++.+.+|++++|+.+++||..+.||||||||||++.+..|.+++|+.+|++.+|||+||||||+ ++|||+||.||+..
T Consensus 489 ~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~ 567 (1394)
T KOG0298|consen 489 FGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLP 567 (1394)
T ss_pred cCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCC
Confidence 68889999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCChhhhHHHhcCCCcCCchhHHHHHHHHHHHHhhhcccccccccCCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 001475 404 PFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYA 483 (1071)
Q Consensus 404 ~~~~~~~F~~~~~~p~~~~~~~~~~~L~~~L~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Q~~~Y~~~~~~~~~~~ 483 (1071)
||+...+|.+.+..++... .....+..+++..++|+.|.+|..++.+||+.+.++++.+++.|-++|+..+..|..++
T Consensus 568 Pf~~~~~~iq~v~~~~~~r--a~~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~ 645 (1394)
T KOG0298|consen 568 PFCRPQDFIQTVDKAYQLR--AKCEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEF 645 (1394)
T ss_pred CCCChHHHHHHHHHHHHHH--hhhhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHH
Confidence 9999999999998877654 45667899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCCCCCCCcccccCCCCCHHHHHHHHHHHH
Q 001475 484 REVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKT 563 (1071)
Q Consensus 484 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRQiC~HP~L~~~~~~~~~~~~~t~~elL~~Ll~~~ 563 (1071)
...+.+++.+.+..+ .+.+.+++...+.++.+|++|||+||||+++.+++.+..+. +++|+|..|+++.
T Consensus 646 ~~~~~~~k~~~l~~~---------sd~~~l~~~~~a~i~~~l~rLRq~Cchplv~~~~ls~~k~~--s~~DiL~~lle~~ 714 (1394)
T KOG0298|consen 646 AAAVEKLKRHNLDNS---------SDLASLSPQLLAIILKWLLRLRQACCHPLVGNSNLSSTKYL--SIQDILARLLENT 714 (1394)
T ss_pred HHHHHHHHHhccccc---------cccccCChhhHHHHHHHHHHHHHhhcccccccCCcchhcCC--CHHHHHHHHHHhc
Confidence 999888877655211 11233456677899999999999999999999988777555 9999999999999
Q ss_pred HHhhhhhhhhHHHHhhhHhhHHHHHHhHHH----HHHHHHHHHHHHHHHhhcc-CCCCCcCceeEeeCCcCCchhhhhhh
Q 001475 564 KIEGEEALRKLVMALNGLAGIALIEKNLSQ----AVSLYKEAMAVVEEHSEDF-RLDPLLNIHLHHNLTEILPMVANCAT 638 (1071)
Q Consensus 564 ~~e~~~~~rk~l~~sq~~a~L~ii~~~~~~----a~~~y~~~l~~~~~~~~~f-~~D~~~~~~~~~nl~~wnp~~~~QA~ 638 (1071)
..++....|......++.+.+..+.+++.. ....|+..+.+..+...+. -.|.--+.|-.+++. +|.-
T Consensus 715 ed~~~~~~R~~~~~~~~~a~i~~~~n~f~~~~l~i~k~y~~~~nl~~~~~~~~~~~d~d~h~~ei~~~~--~~~~----- 787 (1394)
T KOG0298|consen 715 EDECKTELRTLASSKNGLAAIYFEKNDFPGGILQIIKYYRLKLNLANEPNEQNISVDSDLHIHEIYNLL--QASS----- 787 (1394)
T ss_pred chhhhHHHHHHHHHhhhhHHHHHHHhcCchhHHHHHHHhccccccCCCchhcccccchhhHHHHHhhhh--cccc-----
Confidence 999999999999999999999999998884 4555666655444333321 133333334344443 1110
Q ss_pred hhhhcCCCCceEEEeccccCCccccchhHhhhhccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCcCCCCCCCCchh
Q 001475 639 ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDRKSDCCVSSSSFDDAS 718 (1071)
Q Consensus 639 R~hRiGQ~~~V~vyrl~t~~tiEE~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1071)
+-.-+...+-.++|+.-.+. +...+.. |....++
T Consensus 788 -------------------~~~sd~~~~~~~~~~~~~~~--------------------s~~~~~~--~~d~~~~----- 821 (1394)
T KOG0298|consen 788 -------------------LAPSDRKLTELEHKKYQAQM--------------------SRLEWKY--LEDETRV----- 821 (1394)
T ss_pred -------------------ccchhhhHHHHHHHhhhhhh--------------------ccccchh--hchhhHH-----
Confidence 00001111222222222211 1111111 1111222
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHhhcCCCchHHHHHHHHHHhhccccc
Q 001475 719 LITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNK 798 (1071)
Q Consensus 719 l~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ww~~~l~~~~~~~~~~~~l~~~i~~~~~~~~~~ 798 (1071)
+.--|..++++|++.+..+...++.+|...+.++.+..+.++.....||++.....+.+.++..+|-
T Consensus 822 ~~~~~q~~~~kl~s~~~~~~t~~~~e~~~~~~~~~~v~s~m~~k~~~~v~~~~~lqe~~~~~~~eLr------------- 888 (1394)
T KOG0298|consen 822 LYSLLQDLNEKLESVSILKKTFELEEFDLLATNMVNVKSSMGDKIWNKVRDDRLLQEINVEFLEELR------------- 888 (1394)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhhhhhhccccchhHHHHHhhhHHHHHHHHHHHHHH-------------
Confidence 6677889999999999999999999999999999999999999999999999999999888877776
Q ss_pred cccccccccccCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcCCChHhhhhccccccccCCCCCCcccccccchhH
Q 001475 799 SRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESF 878 (1071)
Q Consensus 799 ~~~~~~~~~~~~~~gL~~~l~~~l~~L~~~R~~~~~~l~~l~~~~~~p~~~~ve~~~~C~~c~~~~~~~~C~~C~~~~~~ 878 (1071)
.|+.+++.+.+++..|++...+|..+++.+..+++++++.++.+...+..+...|-.|-...-++.|.+|.+|..+
T Consensus 889 ----ai~~~~~~i~i~~l~L~~~~~~l~~s~~e~~~~~~~i~~~Ie~~~~~~~n~~~i~d~~~k~~~~h~~~~~~~d~~~ 964 (1394)
T KOG0298|consen 889 ----AIAFRARFIHIMKLKLQNLKSDLIASFEEVKGVMQEICEAIETGGALVLNRMEIIDFIEKVTVCHLTDIEDYDKDK 964 (1394)
T ss_pred ----HHHhhhhccccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHhccCCCcchHhhccccc
Confidence 2566899999999999999999999999999999999999999999888888888888877778899999999999
Q ss_pred HHHHHhhccccccCCCc---cchHHHHHHHhhhccccccccccCCCCCCCCCCCCchhhhhccccccceeeccCCchHHH
Q 001475 879 QDYEARLFRLKKSQGDI---ASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSKSPSELEV 955 (1071)
Q Consensus 879 ~~ye~~LF~~~~~~~~~---~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Se~E~ 955 (1071)
..|+++.|+.+...++- +-++|-+.+|.+..+++-+.-++++ -.-.
T Consensus 965 ~i~~~r~~~~~~~~~~~~~i~~~ce~~~~q~k~~~~~s~~~~l~~-------------------------------~~~~ 1013 (1394)
T KOG0298|consen 965 PIKPKRHRRCRLCLRRKSLILFECELFALQPKEDATVSESLELSS-------------------------------MEKS 1013 (1394)
T ss_pred ccccchhhhhhhhhhhhHHHHHHHHHHhcCccccchhhhhhccch-------------------------------hhhc
Confidence 99999999876543332 5567777777665544443322221 1111
Q ss_pred HHHHHHHH-HHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhccccCCCCCcccccCcc
Q 001475 956 ILGVIKNY-CKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSVDALSPD 1034 (1071)
Q Consensus 956 vLk~i~~~-~k~~~~~~~~~~~~~~l~~le~~rkE~~~~r~l~~a~~~~l~A~DEL~ma~~Rlrlr~~~e~~~~~~i~~~ 1034 (1071)
.-|.|..+ .+.++.+++..+|+.++++|+.|+.++...++||..+.|.+.|+||++|+++||.|++..|..++|.|+.+
T Consensus 1014 ~ekSi~~~~~~~~l~~e~~~~~t~~~~~l~~lqnt~~~~~~~~~~~qq~~~~~~~~~~~~m~l~lkd~~~~~~~y~i~~~ 1093 (1394)
T KOG0298|consen 1014 FEKSIIAFLRKKQLFSEWKEEATPLLELLSCLQNTYKFRIEYWIEVQQMVDALDELEMSKMRLYLKDDEEEQSIYRILAC 1093 (1394)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhheeeecCcHHHHHHHHHHHh
Confidence 12334444 45589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhchhhHHHhHHHHHHhhccccccccccc
Q 001475 1035 ELASASVTNSSEKFISMTLLSQVKGKLRYLKVSTE 1069 (1071)
Q Consensus 1035 ev~~~~~~~~~~k~~a~~~l~~~~gql~YL~~~~~ 1069 (1071)
+++.+.+-.+++++++...+..+.|-+|||+||.|
T Consensus 1094 qld~~~~~nt~s~~~~q~~~ls~~G~~r~lk~l~e 1128 (1394)
T KOG0298|consen 1094 QLDEQSQLNTYSLQTSQLSFLSIPGLLRYLKGLKE 1128 (1394)
T ss_pred hHHHHHHHhHHHHHHhhhhhhccchHHHHHHHHHH
Confidence 99999999999999999999999999999999975
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
| >PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi | Back alignment and domain information |
|---|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1071 | ||||
| 1z6a_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN | 4e-13 | ||
| 1z63_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM | 1e-12 | ||
| 3mwy_W | 800 | Crystal Structure Of The Chromodomain-atpase Portio | 1e-06 |
| >pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 | Back alignment and structure |
|
| >pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 | Back alignment and structure |
| >pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 6e-27
Identities = 64/299 (21%), Positives = 111/299 (37%), Gaps = 81/299 (27%)
Query: 246 ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIV 305
+L++CP +L W+ E+++ P L+ ++ R+ +L DI+
Sbjct: 85 ELTPSLVICPLSVLKNWEEELSKFA-P-HLRFAVFHEDRSKI----------KLEDYDII 132
Query: 306 LTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA 365
LTTY VL D L + W I +DEAQ ++ N
Sbjct: 133 LTTYAVLLRDTR-------------------------LKEVEWKYIVIDEAQNIK-NPQT 166
Query: 366 ATEMALR-LYAKHRWCITGTPIQRKLDDLYGLLRFL------KSSPFSISRWWIEVIRDP 418
A++ L +K+R +TGTPI+ K+DDL+ ++ FL S F P
Sbjct: 167 KIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFK------SKFATP 220
Query: 419 YENGDVGAMEFTHKFFKEIMCRSSK--VHVSDELQLPPQEECVSWLTFSPIEEHFYQSQH 476
+ GD A E + R +K + ++ LP + E + +P + Y++
Sbjct: 221 IKKGDNMAKEELKAIISPFILRRTKYDKAIIND--LPDKIETNVYCNLTPEQAAMYKA-- 276
Query: 477 ETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 535
+ + + +L++LLKL+Q HP
Sbjct: 277 -----EVENLFNNIDSVTGIKR-------------------KGMILSTLLKLKQIVDHP 311
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 | Back alignment and structure |
|---|
| >2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68 | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 | Back alignment and structure |
|---|
| >1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78 | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 | Back alignment and structure |
|---|
| >3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 | Back alignment and structure |
|---|
| >3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1071 | ||||
| d1z63a1 | 230 | c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h | 1e-11 | |
| d1z63a1 | 230 | c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h | 2e-04 | |
| d1wema_ | 76 | g.50.1.2 (A:) Death associated transcription facto | 2e-08 | |
| d1z3ix2 | 298 | c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis | 6e-08 | |
| d1z3ix2 | 298 | c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis | 1e-04 | |
| d1weea_ | 72 | g.50.1.2 (A:) PHD finger protein At1g33420 {Thale | 3e-07 | |
| d1wepa_ | 79 | g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus | 5e-07 | |
| d1wewa_ | 78 | g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c | 1e-06 | |
| d1we9a_ | 64 | g.50.1.2 (A:) PHD finger protein At5g26210 {Thale | 3e-05 |
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Score = 63.1 bits (152), Expect = 1e-11
Identities = 30/111 (27%), Positives = 49/111 (44%)
Query: 343 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 402
L + W I +DEAQ +++ + L +K+R +TGTPI+ K+DDL+ ++ FL
Sbjct: 120 LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNP 179
Query: 403 SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLP 453
+ P + GD A E + R +K + LP
Sbjct: 180 GLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLP 230
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 | Back information, alignment and structure |
|---|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1071 | |||
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 100.0 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 100.0 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.96 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.93 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.83 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.81 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.67 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.37 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.17 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.15 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.05 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 98.98 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 98.84 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 98.75 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 98.72 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 98.7 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 98.42 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 98.37 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 98.32 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 98.3 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 98.23 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 98.14 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 98.14 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 97.75 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 97.6 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 97.3 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 96.66 | |
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 96.45 | |
| d1wema_ | 76 | Death associated transcription factor 1, Datf1 (DI | 96.02 | |
| d1wewa_ | 78 | Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop | 95.88 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 94.96 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 94.12 | |
| d1weva_ | 88 | PHD finger protein 22 {Mouse (Mus musculus) [TaxId | 88.97 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 88.68 | |
| d2pnxa1 | 51 | Inhibitor of growth protein 4, Ing4 {Homo sapiens | 85.8 | |
| d1mm2a_ | 61 | Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 | 85.68 | |
| d1wesa_ | 71 | PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu | 83.56 |
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=355.15 Aligned_cols=226 Identities=31% Similarity=0.487 Sum_probs=195.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf 87886798839999999999970109999981221012467886655334777620530568965579888888866831
Q 001475 31 DLPDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGI 110 (1071)
Q Consensus 31 ~~p~L~~~LrpyQ~~av~WMl~rE~~~~~~~~~~~~~~~~~p~w~~~~~~~~~~~~y~n~~tg~~~~~~~~~~~~v~GGI 110 (1071)
+|++++.+|+|||++||.||..++..+ .|||
T Consensus 5 ~P~~~~~~L~~yQ~~~v~~~~~~~~~~-------------------------------------------------~g~i 35 (230)
T d1z63a1 5 EPYNIKANLRPYQIKGFSWMRFMNKLG-------------------------------------------------FGIC 35 (230)
T ss_dssp CCCSCSSCCCHHHHHHHHHHHHHHHTT-------------------------------------------------CCEE
T ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHCC-------------------------------------------------CCEE
T ss_conf 944650450699999999999862169-------------------------------------------------9879
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12698887799999999980499999731101111232034567877433335533035553111246531023234334
Q 001475 111 LADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQ 190 (1071)
Q Consensus 111 LADEMGLGKTve~LalIl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~c~c~~~~~~~~~~~~~v~c~~c~~w~ 190 (1071)
||||||||||+++|+++......
T Consensus 36 LaDe~GlGKT~~~i~~~~~~~~~--------------------------------------------------------- 58 (230)
T d1z63a1 36 LADDMGLGKTLQTIAVFSDAKKE--------------------------------------------------------- 58 (230)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHHT---------------------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHHHHC---------------------------------------------------------
T ss_conf 98589988699998735544212---------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 56545667898776403565320135554322025785443100123201689899995899967211999999999843
Q 001475 191 HADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHT 270 (1071)
Q Consensus 191 h~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~ 270 (1071)
...+++|||||++++.||.+|+.+|+
T Consensus 59 ------------------------------------------------------~~~~~~LIv~p~~l~~~W~~e~~~~~ 84 (230)
T d1z63a1 59 ------------------------------------------------------NELTPSLVICPLSVLKNWEEELSKFA 84 (230)
T ss_dssp ------------------------------------------------------TCCSSEEEEECSTTHHHHHHHHHHHC
T ss_pred ------------------------------------------------------CCCCCCCEECCHHHHHHHHHHHHHHC
T ss_conf ------------------------------------------------------35564411053554267777777640
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCE
Q ss_conf 99997099980887775543210102211277699980888974104677877650234321024887421111233212
Q 001475 271 RPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWR 350 (1071)
Q Consensus 271 ~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dIVItTYe~l~~~~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~r 350 (1071)
+...+..+.+... .....+++|+|++|+.+.+.. .+....|++
T Consensus 85 --~~~~~~~~~~~~~----------~~~~~~~~vvi~~~~~~~~~~-------------------------~l~~~~~~~ 127 (230)
T d1z63a1 85 --PHLRFAVFHEDRS----------KIKLEDYDIILTTYAVLLRDT-------------------------RLKEVEWKY 127 (230)
T ss_dssp --TTSCEEECSSSTT----------SCCGGGSSEEEEEHHHHTTCH-------------------------HHHTCCEEE
T ss_pred --CCCCCEEECCCCC----------HHHCCCCCEEEEEHHHHHHHH-------------------------HHHCCCCEE
T ss_conf --2544101014210----------000257688985499998688-------------------------874165139
Q ss_pred EEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 78152001379688999999940138258971768879913331022345898999723568875488768843279999
Q 001475 351 ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFT 430 (1071)
Q Consensus 351 VIlDEaH~iKn~~Sk~~k~l~~L~a~~Rw~LTGTPiqN~l~DL~~Ll~fL~~~~~~~~~~f~~~~~~p~~~~~~~~~~~L 430 (1071)
||+||||++||+.++.++++..+++.+||+|||||++|++.|||+++.||+|++|+++..|.+.|..++..++..+.+.|
T Consensus 128 vI~DEah~~k~~~s~~~~~~~~l~a~~r~~LTgTPi~n~~~dl~~ll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~L 207 (230)
T d1z63a1 128 IVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEEL 207 (230)
T ss_dssp EEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHH
T ss_pred EEEEHHHCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 99971003443220556665440465579972526776788899888762898678999999998445532677899999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99998876430343323457999
Q 001475 431 HKFFKEIMCRSSKVHVSDELQLP 453 (1071)
Q Consensus 431 ~~~L~~~mlRRtK~dV~~el~LP 453 (1071)
+.++++||+||+|+|+....+||
T Consensus 208 ~~~l~~~~lRr~K~d~~v~~dLP 230 (230)
T d1z63a1 208 KAIISPFILRRTKYDKAIINDLP 230 (230)
T ss_dssp HHHHTTTEECCCTTCHHHHTTSC
T ss_pred HHHHHCCEEEEECCCCCHHHCCC
T ss_conf 99842337997168861755679
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} | Back information, alignment and structure |
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| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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