Citrus Sinensis ID: 001516

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060--
MCSLPKAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKHSDIQDNSSTPRTGDPCSAIGSESCVSNNLHETLSMSKLHKLKFSCKNGDKIGVHTETSDANSDRSTDSEVTGFSDSRLISVPTSECTNAGKPDRSEFEDVNPSDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHAYLGGLLKNVKLKIKSSISSKADIKNSDSDGLMVSESDVADPVAVKSVPPRRRTKSSIRILRDDKMVSSSEEIFSGNGIAADKDEVKVEQLDGEEPAIHNKVSTPDCTEKSPTDPTGSEDSLARGSPMSEGSAAKPSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVHKSDGDTEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREAKKQGRKERRHKEAQAVLAAATAAAAASSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDKNSDSLQSVSDFSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQKMKAETQKHGVEELKGIKQIRVELERLRLLCERIIKREKIKRELILCSHEILAFKRDHHAARLVHGRIPFFPPDVSSESATTSLKGHTDSFKSCSEAFQRSDDVTVDSAASVKNRIKVYVPMDADQRTDDSSMSQNLYPRKPSERMQFSGKQIPHRPHLSRSLANEEEWSSKARKV
ccccccccccccccccccccEEEHHHHccccccEEccccccccccccccccHHHHHcccccccccccEEEEcccccccccccHHHHHHccccEEEEcccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHcccccccccHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHccccccccccccccccccccHHcccccccccccccccccccccccEEEccccccccEEcccccEEEEEEcccccccccccccccccccccccccccccccccccccEEEEEcccccccccccHHHHHHccccEEEEccccccEEEEccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccc
ccccccccccccccccccccEEEEEEEEEccEEEEccccEEccccccccccHHHHHHHHHHHHHccccEEEEcccccEEEEHHHHHHHcccEEEEEEcccccccEEEEEEccccccccccccccccccccccccccccHccccccHHHHHHHHHccccccccccccccccccccccccccccHccccccccccccccHHHccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHccccccccccccEEEEccccccHHccccccccccEEcccccccccEEEEcccccccccccEEEccccEEEEccEEEccccccccccccEccccccccccccccccccccccccccccccccccEEcccccccccEEccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHHcccEEccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccEEEEcccccccccEEEEEccccEEEEHHHcccccccccccHHHHHcccccccccccccccccccccccccEEEcccccccccEcccccEEEEEEEEEccEEEEccccEccccccccccHHHHEHHHHHHccccEEEEcccccEEcccHHHHHHcccEEEEEccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHcccHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccHHcccccccccccccccccccEccccEEEEEEEEcccEEEEEEcccccccccccccccccccccccccccHccccccccccccHHHccccccccccccc
mcslpkaggalkpvnggsmEFAHLFCSLLmpevyiedtmkveplmnvggikeTRMKLVCNIcrvkcgacvrcshgtcrtsfhpiCAREARHRLEVWgkygcnnvELRAFCakhsdiqdnsstprtgdpcsaigsescvsnnlhetlsmsKLHKLKfsckngdkigvhtetsdansdrstdsevtgfsdsrlisvptsectnagkpdrsefedvnpsdaLNFTLILKKLIDrgkvnvkdiasdigispdllkttladgtfasdLQCKLVKWLSNHAYLGGLLKNVKLKIKssisskadiknsdsdglmvsesdvadpvavksvpprrrtkssirilrddkmvssseeifsgngiaadkdevkveqldgeepaihnkvstpdcteksptdptgsedslargspmsegsaakpsdcgffescqseeaalpdqinllnvdqenpicssvdtlvpyfinakpssgffwhpyihkslqmqsgllsgnkvhksdgdteisrleasstasvccnhqgrhskcndmscksdgvNLEQVFKARTrgvlelsptdevegEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREAKKQGRKERRHKEAQAVLAAATAAAAASSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSrvavprilsdknsdslqsvsdfskehprscdicrrsetilnpilicsgckvavHLDCYRnakestgpwYCELCEELLssrssgapsvnfwekpyfvaecslcggttgafrksangqWVHAFCAEWVFestfrrgqvnpvagmeafpkgidvccicrhkhgicikcnygncqttfhptcarsagfylnvkstggnfqhkayCEKHSLEQKMKAETQKHGVEELKGIKQIRVELERLRLLCERIIKREKIKRELILCSHEILAFKRDHHAARlvhgripffppdvssesattslkghtdsfkscseafqrsddvtvdsaASVKNRIkvyvpmdadqrtddssmsqnlyprkpsermqfsgkqiphrphlsrslaneeewsskarkv
MCSLPKAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKHsdiqdnsstprtGDPCSAIGSESCVSNNLHETLSMSKLHKLKFSCKNGDKIGVhtetsdansdrstdsevtgfsdsrlisvptsectnagkpdrsefedvnpsDALNFTLILKKLIDRGKVNVKdiasdigispdLLKTTLADGTFASDLQCKLVKWLSNHAYLGGLLKNVKLKIKSSIsskadiknsdsdglmvsesdvadpvavksvpprrrtkssirilrddkmvssseeifsgngiaadkdeVKVEQLDGEepaihnkvstpdcteksptdptgsedslARGSPMSEGSAAKPSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVHKSDGDTEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNLEQVFKArtrgvlelsptdevEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNqeidvargrrwDAVLVNQYLCELREAKKQGRKERRHKEAQAVLAAATAAAAASSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSrvavprilsdknsdslqsvsdfskehprscDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQKMKAEtqkhgveelkgikqirvELERLRLLCERIikrekikrelILCSHEILAFKRDHHAARLVHGRIPFFPPDVSSESATTSLKGHTDSFKSCSEafqrsddvtvdsaasvknrikvyvpmdadqrtddssmsqnlyprkpsermqfsgkqiphrphlsrslaneeewsskarkv
MCSLPKAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKHSDIQDNSSTPRTGDPCSAIGSESCVSNNLHETLSMSKLHKLKFSCKNGDKIGVHTETSDANSDRSTDSEVTGFSDSRLISVPTSECTNAGKPDRSEFEDVNPSDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHAYLGGllknvklkikssisskadiknsdsdGLMVSESDVADPVAVKSVPPRRRTKSSIRILRDDKMVSSSEEIFSGNGIAADKDEVKVEQLDGEEPAIHNKVSTPDCTEKSPTDPTGSEDSLARGSPMSEGSAAKPSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVHKSDGDTEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREAKKQGRKERRHKEaqavlaaataaaaaSSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDKNSDSLQSVSDFSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYcelceellssrssGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQKMKAETQKHGVEELKGIKQirvelerlrllceriikrekikreLILCSHEILAFKRDHHAARLVHGRIPFFPPDVSSESATTSLKGHTDSFKSCSEAFQRSDDVTVDSAASVKNRIKVYVPMDADQRTDDSSMSQNLYPRKPSERMQFSGKQIPHRPHLSRSLANEEEWSSKARKV
****************GSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKH********************************************************************************************************ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHAYLGGLLKNVKLKI*****************************************************************************************************************************************LPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQM*****************************VCC****************DGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELR*******************************************************************************************************CDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCE*****************EELKGIKQIRVELERLRLLCERIIKREKIKRELILCSHEILAFKRDHHAARLVHGRIPFF********************************************IKVY*********************************************************
MCSLPKAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAK**********************************************************************************************************LNFTLILKKLIDRGKVNVKD*ASDI******************DLQCKLVKWLS******************************************************************************************************************************************************************************TLVPYFINAKPSSGFFWHPYI********************************************************************************GEIIYFQHR**********LADNL********************************************************AAAAASSRISSFRKDSLEESASQENLL***********************************************KEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRS*******FWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEK**************************************************LCSHEILAFKRDHHAARLVHG**************************************************************************************************************
MCSLPKAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKHSD***************AIGSESCVSNNLHETLSMSKLHKLKFSCKNGDKIGVHT****************GFSDSRLISVPTSECTNAGKPDRSEFEDVNPSDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHAYLGGLLKNVKLKIKSSISSKADIKNSDSDGLMVSESDVAD**************SSIRILRDDKMVSSSEEIFSGNGIAADKDEVKVEQLDGEEPAIHNKVS********************************PSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVHKSDGDTEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREA********************************************ENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDK******************CDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQKMKAETQKHGVEELKGIKQIRVELERLRLLCERIIKREKIKRELILCSHEILAFKRDHHAARLVHGRIPFFPPDV***************FKSCSEAFQRSDDVTVDSAASVKNRIKVYVPMDAD**********NLYPRKP**********************************
*CS**KAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKHS*****************************************************************************************************SDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHAYLGGLLKNVKLKIKSS***************MVSESDVADPVAVKSVPPRRRTKSSIRILRDDKMVSSSEEIFSGNGIAADKDEVKVEQLDG******************************RGSPMSEGSAAKPSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVH*********************************SCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREAKKQGR**********VLAAATAAAAASSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDKNSDSLQSVSDFSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL*****************YFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKH*********************KQIRVELERLRLLCERIIKREKIKRELILCSHEILAFKRDHHAARLVHGRIPFFPPD************************QRSDDVTVDSAASVKNRIKVYVPM******************************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MCSLPKAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKHSDIQDNSSTPRTGDPCSAIGSESCVSNNLHETLSMSKLHKLKFSCKNGDKIGVHTETSDANSDRSTDSEVTGFSDSRLISVPTSECTNAGKPDRSEFEDVNPSDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHAYLGGLLKNVKLKIKSSISSKADIKNSDSDGLMVSESDVADPVAVKSVPPRRRTKSSIRILRDDKMVSSSEEIFSGNGIAADKDEVKVEQLDGEEPAIHNKVSTPDCTEKSPTDPTGSEDSLARGSPMSEGSAAKPSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVHKSDGDTEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREAKKQGRKERRHKEAQAVLAAATAAAAASSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDKNSDSLQSVSDFSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQKMKAETQKHGVEELKGxxxxxxxxxxxxxxxxxxxxxEKIKRELILCSHEILAFKRDHHAARLVHGRIPFFPPDVSSESATTSLKGHTDSFKSCSEAFQRSDDVTVDSAASVKNRIKVYVPMDADQRTDDSSMSQNLYPRKPSERMQFSGKQIPHRPHLSRSLANEEEWSSKARKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1062 2.2.26 [Sep-21-2011]
P55201 1214 Peregrin OS=Homo sapiens yes no 0.187 0.163 0.298 2e-21
Q12311 748 NuA3 HAT complex componen yes no 0.211 0.300 0.307 5e-21
O95696 1058 Bromodomain-containing pr no no 0.140 0.140 0.344 3e-20
O74759 767 Mst2 complex subunit nto1 yes no 0.150 0.208 0.316 1e-19
Q9ULD4 1205 Bromodomain and PHD finge no no 0.140 0.123 0.322 1e-19
Q7YZH1 3241 PHD finger protein rhinoc no no 0.161 0.052 0.277 1e-18
Q9C5X41062 Histone-lysine N-methyltr no no 0.123 0.123 0.34 3e-18
Q92613 823 Protein Jade-3 OS=Homo sa no no 0.231 0.298 0.277 5e-18
Q6IE82 823 Protein Jade-3 OS=Mus mus no no 0.270 0.348 0.259 9e-18
P0CB221083 Histone-lysine N-methyltr no no 0.080 0.079 0.454 4e-17
>sp|P55201|BRPF1_HUMAN Peregrin OS=Homo sapiens GN=BRPF1 PE=1 SV=2 Back     alignment and function desciption
 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 107/238 (44%), Gaps = 39/238 (16%)

Query: 669 VMSRAKETLSRVAVPRILSDKNSDSLQSVSDF---SKEHPRS-------CDICRRSE-TI 717
           +M+  ++T     +P+ + +   D L+  S F   +K  P +       C IC   E   
Sbjct: 227 IMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVCCICNDGECQN 286

Query: 718 LNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAEC 777
            N IL C  C +AVH +CY       G W C  C                 + P    +C
Sbjct: 287 SNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRC----------------LQSPSRAVDC 330

Query: 778 SLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQ-VNPVAGMEAFP--KGIDVCCICR 834
           +LC    GAF+++ +G+W H  CA W+ E  F     + P+  +E  P  +    C IC+
Sbjct: 331 ALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICK 390

Query: 835 HK-HGICIKCNYGNCQTTFHPTCARSAGFYLN---VKSTGGN-----FQHKAYCEKHS 883
            +  G CI+C+  NC T FH TCA+ AG Y+    V+ TG N      +  AYC+ H+
Sbjct: 391 QRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHT 448
Component of the MOZ/MORF complex which has a histone H3 acetyltransferase activity. Positively regulates the transcription of RUNX1 and RUNX2.
Homo sapiens (taxid: 9606)
>sp|Q12311|NTO1_YEAST NuA3 HAT complex component NTO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NTO1 PE=1 SV=1 Back     alignment and function description
>sp|O95696|BRD1_HUMAN Bromodomain-containing protein 1 OS=Homo sapiens GN=BRD1 PE=1 SV=1 Back     alignment and function description
>sp|O74759|NTO1_SCHPO Mst2 complex subunit nto1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nto1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ULD4|BRPF3_HUMAN Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens GN=BRPF3 PE=1 SV=2 Back     alignment and function description
>sp|Q7YZH1|RNO_DROME PHD finger protein rhinoceros OS=Drosophila melanogaster GN=rno PE=1 SV=1 Back     alignment and function description
>sp|Q9C5X4|ATX1_ARATH Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=2 Back     alignment and function description
>sp|Q92613|JADE3_HUMAN Protein Jade-3 OS=Homo sapiens GN=PHF16 PE=1 SV=1 Back     alignment and function description
>sp|Q6IE82|JADE3_MOUSE Protein Jade-3 OS=Mus musculus GN=Phf16 PE=2 SV=1 Back     alignment and function description
>sp|P0CB22|ATX2_ARATH Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis thaliana GN=ATX2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1062
255545554 1478 phd finger protein, putative [Ricinus co 0.950 0.682 0.616 0.0
224084824 1429 predicted protein [Populus trichocarpa] 0.936 0.696 0.569 0.0
356518511 1428 PREDICTED: uncharacterized protein LOC10 0.951 0.707 0.554 0.0
449445230 1431 PREDICTED: uncharacterized protein LOC10 0.912 0.677 0.551 0.0
449479909 1403 PREDICTED: uncharacterized LOC101212864 0.886 0.670 0.545 0.0
357461689 1428 Protein Jade-1 [Medicago truncatula] gi| 0.958 0.712 0.525 0.0
302141882 1535 unnamed protein product [Vitis vinifera] 0.624 0.431 0.669 0.0
297839639 1426 PHD finger family protein [Arabidopsis l 0.935 0.697 0.480 0.0
12323292 1506 putative phorbol ester / diacylglycerol 0.932 0.657 0.457 0.0
224063154 1349 predicted protein [Populus trichocarpa] 0.532 0.419 0.717 0.0
>gi|255545554|ref|XP_002513837.1| phd finger protein, putative [Ricinus communis] gi|223546923|gb|EEF48420.1| phd finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1227 bits (3174), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 664/1077 (61%), Positives = 792/1077 (73%), Gaps = 68/1077 (6%)

Query: 5    PKAGGALKPVNGGS----MEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCN 60
            PK GGALKP+ G S    +EFAHLFCSL  PEVY+ED  K+E +M+V  IKETR KLVCN
Sbjct: 395  PKQGGALKPIGGESSGSILEFAHLFCSLWTPEVYVEDLTKMEKIMDVHEIKETRRKLVCN 454

Query: 61   ICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKHSDIQDNS 120
            +C+VKCG CVRCSHGTCRT+FHPICAREARHR+EVWGKYG  NVELRAFC+KHS+  D S
Sbjct: 455  VCKVKCGVCVRCSHGTCRTAFHPICAREARHRMEVWGKYGYENVELRAFCSKHSEFPDGS 514

Query: 121  STPRTGDPCSAIGSESCVSNNLHETLSMSKLHKLKFSCKNGDKIGVHTETSDANSDRSTD 180
            +  + G   ++  S++  +N +  T    + HKLK   +NGDK+ VH ET D  SD+S D
Sbjct: 515  NL-QLGKITAS--SDTSTANCIQTTSLTDRQHKLKIG-RNGDKLAVHVETRDTVSDKSGD 570

Query: 181  SEV--TGFSDSRLISVPTSEC------TNAGKPDRSEFEDVNPSDALNFTLILKKLIDRG 232
            +E    G SDSRL  +  S+C      +N G  +R + ED N S++L+F L+LK+LIDRG
Sbjct: 571  NESREIGLSDSRLDDLLISDCADGDHVSNMGLSERHDKEDPNISNSLDFALLLKQLIDRG 630

Query: 233  KVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHAYLGGLLKNVKLKIKSSI 292
            KVN+KD+A +IGISPD L +TL D     DLQCK+VKWL NHAY+G   KN+++K+ S+I
Sbjct: 631  KVNLKDVALEIGISPDSLLSTL-DVILVPDLQCKIVKWLGNHAYMGSSHKNLRIKLNSTI 689

Query: 293  SSKADIK-NSDSDGLMVSESDVADPVAVKSVPPRRRTKSSIRILRDDKMVSSSEEIFSGN 351
             S+ +++ N  SD + +SESD+ D VAVKSVPPRRRTKS IRI+RD+K+  SSEE+ S +
Sbjct: 690  LSRDEMEVNDHSDIVTLSESDITDHVAVKSVPPRRRTKSKIRIMRDNKLTCSSEELLSNS 749

Query: 352  GIAADKDEVKVEQLDGEEPAIHNKVSTPDCTEKSPTDPTGSEDSLARGSPMSEGSAAKPS 411
            G+    DEVKV+Q   EE  I  +VS P                              PS
Sbjct: 750  GMLL--DEVKVDQAVCEEREISTEVS-PKVI-----------------------FLDNPS 783

Query: 412  DCGFFESCQSEEAALP--DQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHK 469
             C   E  +S+ A L   D IN       N + S + +++P     + SS F+ HPYI K
Sbjct: 784  GCTLSEKVESQPAVLQHGDSINA------NTVYSDMISVLPDLNKVQGSSSFYMHPYIRK 837

Query: 470  S-LQMQSGLLSGNKVHKSDG--DTEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNL 526
              +Q+QSGLL  + V  ++G    E   LE SS AS CC+HQ  HS  ND +CK D VN 
Sbjct: 838  KFMQLQSGLLLRDNVCGAEGWRVGETCCLEPSSNASDCCDHQNTHSNRND-TCKFDEVNS 896

Query: 527  EQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVA 586
             Q+ KA+  GV ELSP DEVEGEI+YFQ RLLGNA +RKR  DNL+C+  K+L  EID  
Sbjct: 897  GQLIKAKRLGVHELSPADEVEGEIMYFQDRLLGNAIARKRFTDNLICEIAKSLPHEIDKT 956

Query: 587  RGRRWDAVLVNQYLCELREAKKQGRKERRHKEAQAVLAAATAAAAASSRISSFRKDSLEE 646
              +RWDAV VNQYL ELREAKKQGRKER+HKEAQAVLAAATAAAAASSRISSFRKD+ +E
Sbjct: 957  SAQRWDAVFVNQYLNELREAKKQGRKERKHKEAQAVLAAATAAAAASSRISSFRKDAYDE 1016

Query: 647  SASQENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDKNSDSLQSVSDFSKEHPR 706
            S +QE    +      A ISSQ+M R KETLSRVAVPR  S+K SDS+QS S+FSKEHPR
Sbjct: 1017 STNQEVSTSV------AGISSQLMPRPKETLSRVAVPRNSSEKYSDSVQSGSEFSKEHPR 1070

Query: 707  SCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVN 766
            SCDICRRSET+LNPIL+CS CKVAVHLDCYR+ KESTGPWYCELCEELLSS+ S A S+N
Sbjct: 1071 SCDICRRSETVLNPILVCSSCKVAVHLDCYRSVKESTGPWYCELCEELLSSKCSAAASLN 1130

Query: 767  FWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKG 826
            FWEKPYFVAEC LCGGTTGAFRKSA+ QWVHAFCAEWVFE TFRRGQVNPV GME   KG
Sbjct: 1131 FWEKPYFVAECGLCGGTTGAFRKSADNQWVHAFCAEWVFEPTFRRGQVNPVDGMETITKG 1190

Query: 827  IDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQ 886
            ID+C ICRHKHG+CIKC+YG+CQTTFHP+CARSAGFY+NVK+  G  QHKAYCE+H LEQ
Sbjct: 1191 IDICFICRHKHGVCIKCSYGHCQTTFHPSCARSAGFYMNVKTLNGKLQHKAYCERHGLEQ 1250

Query: 887  KMKAETQKHGVEELKGIKQIRVELERLRLLCERIIKREKIKRELILCSHEILAFKRDHHA 946
            + KA+TQKHG EELK +KQIRVELERLRLLCERIIKREKIKR+L+LCSH ILA KRDH A
Sbjct: 1251 RAKADTQKHGAEELKSMKQIRVELERLRLLCERIIKREKIKRDLVLCSHSILACKRDHVA 1310

Query: 947  -ARLVHGRIPFFPPDVSSESATTSLKGHTDSFKSCSEAFQRSDDVTVDSAASVKNRIKVY 1005
             + LVH   PFFPPDVSSESATTSLKG+TD +KSCS+A QRSDDVTVDS  SVK+R+K  
Sbjct: 1311 RSMLVHS--PFFPPDVSSESATTSLKGNTDGYKSCSDAMQRSDDVTVDSTISVKHRVK-- 1366

Query: 1006 VPMDADQRTDDSSMSQNLYPRKPSERMQFSGKQIPHRPHL-SRSLANEEEWSSKARK 1061
            V MD DQ+TDDSS SQ+L+ RKP ER+ F+GKQIPHR  L SR+  +  EWSS++RK
Sbjct: 1367 VTMDTDQKTDDSSTSQHLFTRKPLERVSFAGKQIPHRVSLASRNALDAGEWSSQSRK 1423

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224084824|ref|XP_002307412.1| predicted protein [Populus trichocarpa] gi|222856861|gb|EEE94408.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356518511|ref|XP_003527922.1| PREDICTED: uncharacterized protein LOC100777481 [Glycine max] Back     alignment and taxonomy information
>gi|449445230|ref|XP_004140376.1| PREDICTED: uncharacterized protein LOC101212864 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449479909|ref|XP_004155743.1| PREDICTED: uncharacterized LOC101212864 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357461689|ref|XP_003601126.1| Protein Jade-1 [Medicago truncatula] gi|355490174|gb|AES71377.1| Protein Jade-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|302141882|emb|CBI19085.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297839639|ref|XP_002887701.1| PHD finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297333542|gb|EFH63960.1| PHD finger family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|12323292|gb|AAG51624.1|AC012193_6 putative phorbol ester / diacylglycerol binding protein; 61157-67783 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224063154|ref|XP_002301017.1| predicted protein [Populus trichocarpa] gi|222842743|gb|EEE80290.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1062
CGD|CAL0003263 759 orf19.5910 [Candida albicans ( 0.154 0.216 0.328 1.5e-17
SGD|S000006235 748 NTO1 "Subunit of the NuA3 hist 0.201 0.286 0.296 2.4e-17
TAIR|locus:20659231062 ATX1 "homologue of trithorax" 0.123 0.123 0.34 9e-17
UNIPROTKB|F1SQG0 1214 BRPF1 "Uncharacterized protein 0.202 0.177 0.287 1.8e-16
RGD|1584828 1246 Brpf1 "bromodomain and PHD fin 0.202 0.172 0.287 1.8e-16
UNIPROTKB|I3LMI5 1248 BRPF1 "Uncharacterized protein 0.202 0.172 0.287 1.9e-16
UNIPROTKB|E1BPS1 1213 BRPF1 "Uncharacterized protein 0.202 0.177 0.284 3.7e-16
UNIPROTKB|P55201 1214 BRPF1 "Peregrin" [Homo sapiens 0.202 0.177 0.284 3.7e-16
UNIPROTKB|E2RH23 1220 BRPF1 "Uncharacterized protein 0.202 0.176 0.284 3.8e-16
UNIPROTKB|F1P2H3 1138 BRPF1 "Uncharacterized protein 0.202 0.188 0.287 1.1e-15
CGD|CAL0003263 orf19.5910 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
 Score = 251 (93.4 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 62/189 (32%), Positives = 85/189 (44%)

Query:   704 HPRSCDICRRSETI-LNPILICSGCKVAVHLDCYRNAKESTGPWYXXXXXXXXXXXXXGA 762
             + + C IC  S+    N I+ C GC +AVH +CY  A    G W                
Sbjct:   222 YDQKCAICNDSDCDNANAIVFCDGCDIAVHQECYGVAFIPEGQWLCRKCM---------- 271

Query:   763 PSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRG-QVNPVAGME 821
               +N         EC  C  TTGAF++  N  W H  C  W+ E  F     + P+ GME
Sbjct:   272 --IN----KNRTTECVFCPSTTGAFKQLDNSLWSHVICGLWINELYFANPIYMEPIEGME 325

Query:   822 AFPKGID--VCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLN----VKSTGGN-FQ 874
               PK      C IC+ + G CI+C   +C   +H TCA+ AG Y++    +K    N   
Sbjct:   326 GIPKSRWKLTCYICKQRVGACIQCCNRSCFQAYHVTCAKRAGLYMSMTQGIKGAISNKLT 385

Query:   875 HKAYCEKHS 883
              K+YCE+HS
Sbjct:   386 LKSYCERHS 394
GO:0033100 "NuA3 histone acetyltransferase complex" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0004402 "histone acetyltransferase activity" evidence=IEA
GO:0035064 "methylated histone residue binding" evidence=IEA
GO:0016573 "histone acetylation" evidence=IEA
SGD|S000006235 NTO1 "Subunit of the NuA3 histone acetyltransferase complex" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
TAIR|locus:2065923 ATX1 "homologue of trithorax" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQG0 BRPF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1584828 Brpf1 "bromodomain and PHD finger containing, 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LMI5 BRPF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BPS1 BRPF1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P55201 BRPF1 "Peregrin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RH23 BRPF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2H3 BRPF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1062
pfam13832109 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like doma 3e-41
COG5141 669 COG5141, COG5141, PHD zinc finger-containing prote 6e-27
pfam1377189 pfam13771, zf-HC5HC2H, PHD-like zinc-binding domai 8e-25
pfam13832109 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like doma 1e-22
pfam1377189 pfam13771, zf-HC5HC2H, PHD-like zinc-binding domai 2e-14
COG5141669 COG5141, COG5141, PHD zinc finger-containing prote 1e-12
pfam1383133 pfam13831, PHD_2, PHD-finger 1e-10
pfam0062851 pfam00628, PHD, PHD-finger 1e-04
smart0024947 smart00249, PHD, PHD zinc finger 1e-04
>gnl|CDD|206003 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like domain Back     alignment and domain information 
 Score =  146 bits (371), Expect = 3e-41
 Identities = 48/110 (43%), Positives = 64/110 (58%), Gaps = 3/110 (2%)

Query: 775 AECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGI--DVCCI 832
           AEC LC    GA +K+ +G+WVH  CA +V E  F  G       +   PK      CC 
Sbjct: 1   AECCLCPLRGGALKKTTDGRWVHVLCAIFVPEVRFGNGATMEPIDVSRIPKERWKLKCCF 60

Query: 833 CRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKH 882
           C+ + G CI+C+YG CQT+FH TCAR+AG Y+ ++    N Q  AYC+KH
Sbjct: 61  CKKRSGACIQCSYGRCQTSFHVTCARAAGVYMEIEDW-PNLQVIAYCQKH 109

Length = 109
>gnl|CDD|227470 COG5141, COG5141, PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|222368 pfam13771, zf-HC5HC2H, PHD-like zinc-binding domain Back     alignment and domain information
>gnl|CDD|206003 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like domain Back     alignment and domain information
>gnl|CDD|222368 pfam13771, zf-HC5HC2H, PHD-like zinc-binding domain Back     alignment and domain information
>gnl|CDD|227470 COG5141, COG5141, PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|222406 pfam13831, PHD_2, PHD-finger Back     alignment and domain information
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1062
KOG0954893 consensus PHD finger protein [General function pre 100.0
KOG0954 893 consensus PHD finger protein [General function pre 100.0
KOG0956 900 consensus PHD finger protein AF10 [General functio 100.0
COG5141 669 PHD zinc finger-containing protein [General functi 100.0
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 100.0
KOG0957 707 consensus PHD finger protein [General function pre 99.97
PF13832110 zf-HC5HC2H_2: PHD-zinc-finger like domain 99.9
PF13832110 zf-HC5HC2H_2: PHD-zinc-finger like domain 99.88
KOG0956900 consensus PHD finger protein AF10 [General functio 99.88
COG5141669 PHD zinc finger-containing protein [General functi 99.86
KOG09551051 consensus PHD finger protein BR140/LIN-49 [General 99.83
PF1377190 zf-HC5HC2H: PHD-like zinc-binding domain 99.71
KOG0957707 consensus PHD finger protein [General function pre 99.67
PF1377190 zf-HC5HC2H: PHD-like zinc-binding domain 99.5
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 98.99
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 98.91
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 97.65
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 97.57
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 97.48
KOG1084375 consensus Transcription factor TCF20 [Transcriptio 97.1
KOG1244336 consensus Predicted transcription factor Requiem/N 96.93
KOG1512381 consensus PHD Zn-finger protein [General function 96.75
PF15446175 zf-PHD-like: PHD/FYVE-zinc-finger like domain 96.63
KOG1084375 consensus Transcription factor TCF20 [Transcriptio 96.54
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 96.27
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 95.99
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 95.81
KOG0825 1134 consensus PHD Zn-finger protein [General function 95.08
KOG4299613 consensus PHD Zn-finger protein [General function 94.23
KOG1973274 consensus Chromatin remodeling protein, contains P 93.35
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 91.31
PF1444654 Prok-RING_1: Prokaryotic RING finger family 1 90.71
KOG0383 696 consensus Predicted helicase [General function pre 87.61
TIGR0284480 spore_III_D sporulation transcriptional regulator 86.77
PF10198131 Ada3: Histone acetyltransferases subunit 3; InterP 85.2
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 83.87
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 80.12
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-42  Score=400.29  Aligned_cols=524  Identities=30%  Similarity=0.392  Sum_probs=321.7

Q ss_pred             CCCCCCCCcceecCCCCCcHhhhhhcccCceeeccCccccccccccCchhhhccccccccccccCceeeCCCCCCCcccc
Q 001516            3 SLPKAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFH   82 (1062)
Q Consensus         3 lCP~kgGALK~T~~G~~~WvHv~CALw~PEv~f~~~~~~epV~~V~~I~~~R~~LkC~iC~~k~GAcIqCs~~~C~~~FH   82 (1062)
                      |||++||+||++.+| .+|||+.||||+|||+|+++..|+||++|+.|+..||.|.|.+|+.+.||||||+.+.|.++||
T Consensus       328 LCPkkGGamK~~~sg-T~wAHvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k~GACIqCs~k~C~t~fH  406 (893)
T KOG0954|consen  328 LCPKKGGAMKPTKSG-TKWAHVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVKSGACIQCSNKTCRTAFH  406 (893)
T ss_pred             eccccCCcccccCCC-CeeeEeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhcccCcceEEecccchhhhcc
Confidence            799999999999988 5999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCceEEEccccCCcceeEeecCCCCCCCCCCCCCCCCCCCCCCCCC--ccccccccccccccCccceeeeeccC
Q 001516           83 PICAREARHRLEVWGKYGCNNVELRAFCAKHSDIQDNSSTPRTGDPCSAIGS--ESCVSNNLHETLSMSKLHKLKFSCKN  160 (1062)
Q Consensus        83 vtCA~~aG~~~e~~~~~g~~~~~~~~fC~~Hr~~~~~~~~~~~g~~~e~d~~--~~~~~~~~~~~l~~~~l~Qlq~~~~~  160 (1062)
                      ++||+++|..|.++.+. .+.+.|+.||.+|..-+........++.......  ............+.+.++++...   
T Consensus       407 v~CA~~aG~~~~~~~~~-~D~v~~~s~c~khs~~~~~~s~g~~~e~p~p~~~~p~~~~~e~~~~s~r~q~l~~~e~e---  482 (893)
T KOG0954|consen  407 VTCAFEAGLEMKTILKE-NDEVKFKSYCSKHSDHREGKSLGNEAESPHPRCHLPEQSVGEGHRSSDRAQKLQELEGE---  482 (893)
T ss_pred             chhhhhcCCeeeeeecc-CCchhheeecccccccccccccccccCCCCccccChhhhhhhhhhhhHHHHHHhhcchh---
Confidence            99999999999999754 7788999999999987753222111111100000  00123334444555555554422   


Q ss_pred             CCeeeEeeecCCCCCCCCCCccccccCCcccccccccccccCCCCCCCCCCCCCCCCCcchHHHHHHHhhhCCcchhhhh
Q 001516          161 GDKIGVHTETSDANSDRSTDSEVTGFSDSRLISVPTSECTNAGKPDRSEFEDVNPSDALNFTLILKKLIDRGKVNVKDIA  240 (1062)
Q Consensus       161 gd~~~~~~~t~~~~~~~~~~~e~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~gkv~~~~~a  240 (1062)
                                .|.-.++.-.-|..++|.-.+++.-  .=+. .+..+-....-.+..+.+|.+++||++|+|||+++++|
T Consensus       483 ----------f~~~v~~~diae~l~~~e~~vs~iy--nywk-lkrks~~n~~lippk~d~~~~i~kk~~~~~kv~~kl~a  549 (893)
T KOG0954|consen  483 ----------FYDIVRNEDIAELLSMPEFAVSAIY--NYWK-LKRKSRFNKELIPPKSDEVGLIAKKLEDLGKVRVKLVA  549 (893)
T ss_pred             ----------HhhhhhHHHHHHHhcCchHHHHHHH--HHHH-HhhhccCCCcCCCCcchhccchhhHHHHhhhhhhHHHH
Confidence                      2222222222344445555554410  0011 34444444678899999999999999999999999999


Q ss_pred             hhhcCChhhhhhccccccccchh-----------hHHHHHHhhhcccccccccceeeccccccccccc-------ccccC
Q 001516          241 SDIGISPDLLKTTLADGTFASDL-----------QCKLVKWLSNHAYLGGLLKNVKLKIKSSISSKAD-------IKNSD  302 (1062)
Q Consensus       241 ~~~g~s~~~~~a~l~~~~~~~~~-----------~~k~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~  302 (1062)
                      .++   +|.+.+.+...|.+--.           |.--..+|-.|.||++.++...++.+.++.+..-       +.-.+
T Consensus       550 hlr---qdlerv~~~~~~~trrekas~s~~ki~eq~f~~ql~l~~q~~~~~~~~~n~~~n~~f~~~~r~tl~~k~~~s~~  626 (893)
T KOG0954|consen  550 HLR---QDLERVRNLCYTKTRREKASNSYAKIDEQLFPDQLLLQHQHMGSSDKGKNLKRNTTFYSERRATLCTKGIVSLD  626 (893)
T ss_pred             HHH---HHHHHhhcccchhcccchhhhhHHHHHhHHHHHHHHHHHHhhcccccchhhhhhccccCCcchhHhhhccccCC
Confidence            998   77777765422222111           1112233678999999999998887666544332       22233


Q ss_pred             CCCcccc---ccCCCCcccccccCCCCcccccceecccCcccccccceecCCCcccccchhhhcc--cCC-CCcccCccc
Q 001516          303 SDGLMVS---ESDVADPVAVKSVPPRRRTKSSIRILRDDKMVSSSEEIFSGNGIAADKDEVKVEQ--LDG-EEPAIHNKV  376 (1062)
Q Consensus       303 ~~~~~~~---~~~~~~~~~~~~vp~~~rtk~~~~il~dn~~~cs~e~~~~~ng~~~~~~~~~~~~--~~~-~~~~~~~~~  376 (1062)
                      +++...+   .--+..+.++           ||-.=.-|.-+|.--+--..||+....-+.+..-  ..+ ..|...-++
T Consensus       627 ~d~~~~a~q~lq~il~p~~~-----------~~~~~i~n~~r~~~t~n~rkns~~~v~ak~~nnrl~~s~Shsp~~~h~~  695 (893)
T KOG0954|consen  627 SDILDPAVQKLQSILRPHEI-----------NICNNITNNTRCTLTENCRKNSIVVVPAKANNNRLLKSGSHSPAPDHSP  695 (893)
T ss_pred             ccccCHHHHHhhcccCcchh-----------hhhhccccCcccccChhhccCcceeeecccccCccccCCCcCCccccCC
Confidence            4433221   1112222222           1111112222222100011222222100000000  000 000000000


Q ss_pred             -----------cCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCcccccccccccchhhccc---cCCCCCCCC
Q 001516          377 -----------STPDCTEKSPTDPTGSEDSLARGSPMSEGSAAKPSDCGFFESCQSEEAALPDQINLL---NVDQENPIC  442 (1062)
Q Consensus       377 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  442 (1062)
                                 .-++.....+.+-..++.    ++.+                     .+.+-+.++-   |+.++--.-
T Consensus       696 sp~~~t~s~~~~h~gk~g~~pr~d~~s~s----asss---------------------~n~ksq~~skirsn~s~~s~n~  750 (893)
T KOG0954|consen  696 SPKNSTVSDQKVHHGKSGVIPRDDHGSQS----ASSS---------------------SNVKSQNASKIRSNSSQNSGNG  750 (893)
T ss_pred             CcCCCccchhhcCCccCCCCccccccccc----cccc---------------------cCcccccccccccCcccccCCC
Confidence                       000001111111111100    0000                     0111111111   333333333


Q ss_pred             CcCCCcccccccCCCCCccccchhhhhh-hccccCccCCCcccccCCcccccccccccCCCccccccCccCccCCCcccC
Q 001516          443 SSVDTLVPYFINAKPSSGFFWHPYIHKS-LQMQSGLLSGNKVHKSDGDTEISRLEASSTASVCCNHQGRHSKCNDMSCKS  521 (1062)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~hp~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (1062)
                      +...+.++.++|.+.+.+|..|-||++. ..+.-..+++     ...+..+.+|.....-+.=.-..++++.        
T Consensus       751 ni~~~~sss~~~~~~~p~fsph~~~~~s~s~s~~e~~sk-----s~~~s~~~~~kq~y~~~~~~~~~~~q~~--------  817 (893)
T KOG0954|consen  751 NIPNPISSSLFNQEAYPGFSPHRYIHKSLSESGKEQTSK-----SSTDSDVARMKQTYTHLAGSEEGNKQLQ--------  817 (893)
T ss_pred             cCCCCcchhhhccccCCCCCcchhhhhhhhhhccccccc-----ccccCCcchhhheecccccccchhhHHH--------
Confidence            3334677799999999999999999999 5554444332     3445555555522211111122222222        


Q ss_pred             CccchHHHHHhhhccccccCCCcchhhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhHHHHhhhhcchhhHHH
Q 001516          522 DGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLV  596 (1062)
Q Consensus       522 ~~~~~~q~~~~~~~~~~~~~p~de~e~E~~~~q~~ll~~~~~~~~~~~~l~~~v~~~l~~e~~~~~~r~~d~~~~  596 (1062)
                      ....+-|+++|+.+|+++.+|.|+.++|..|.|..+++.+..+++..+++..+++++++.|++....|+||..++
T Consensus       818 g~e~~~~~s~~~p~~~~d~s~~D~e~~~~~~~q~~~~g~~r~rkqssd~~n~~~asr~~~~~~~~~g~~~~~s~~  892 (893)
T KOG0954|consen  818 GAETFLQLSKARPLGILDLSPEDEEEGELLYYQLQLLGTARSRKQSSDNLNYEVASRLPLEIDEQHGRRWDDSLV  892 (893)
T ss_pred             HHHHHHHhhccCCcccccCCCCchhhhhHHhhhhccccceecccccccCcChhhhccCCCccccccCcCcchhhc
Confidence            236788999999999999999999999999999999999999999999999999999999999999999998765

>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain Back     alignment and domain information
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG1084 consensus Transcription factor TCF20 [Transcription] Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain Back     alignment and domain information
>KOG1084 consensus Transcription factor TCF20 [Transcription] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1 Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>TIGR02844 spore_III_D sporulation transcriptional regulator SpoIIID Back     alignment and domain information
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes [] Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1062
2lq6_A87 Solution Structure Of Brd1 Phd2 Finger Length = 87 8e-05
>pdb|2LQ6|A Chain A, Solution Structure Of Brd1 Phd2 Finger Length = 87 Back     alignment and structure 
Iteration: 1

 Score = 46.6 bits (109), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 830 CCICRHKH-GICIKCNYGNCQTTFHPTCARSAGFYLNVKS----TGG----NFQHKAYCE 880
           C +C+ K  G  I+C+  NC T FH TCA+ AG Y+ ++     TGG    + +  AYC+
Sbjct: 20  CYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCD 79
Query: 881 KHS 883
            H+
Sbjct: 80  VHT 82

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1062
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 5e-10
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 4e-09
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 2e-08
2yt5_A66 Metal-response element-binding transcription facto 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 6e-04
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 Back     alignment and structure
 Score = 55.7 bits (134), Expect = 5e-10
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 708 CDICRRSETI-LNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEE 753
           C IC   E+   N IL C  C +AVH +CY       G W C  C +
Sbjct: 19  CSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1062
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 5e-06
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 1e-04
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 1e-04
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 4e-04
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 7e-04
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 0.001
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.7 bits (102), Expect = 5e-06
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 698 SDFSKEHPRSCDICRRSETI-LNPILICSGCKVAVHLDCYR------NAKESTGPWYCEL 750
            DF+ E   +C +CR+      N ++ C  C    H DC++         +    WYC  
Sbjct: 9   DDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCAR 68

Query: 751 CEELLSSRSSGAPS 764
           C   +   +     
Sbjct: 69  CTRQMKRMAQKNQK 82
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1062
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.03
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 97.69
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 97.53
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 97.47
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 97.44
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 97.43
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 97.12
d1wema_76 Death associated transcription factor 1, Datf1 (DI 96.97
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 96.78
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 96.76
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 96.17
d1wema_76 Death associated transcription factor 1, Datf1 (DI 84.25
d1zbdb_124 Effector domain of rabphilin-3a {Rat (Rattus norve 83.49
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 82.25
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 81.64
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=5.9e-07  Score=62.82  Aligned_cols=58  Identities=26%  Similarity=0.654  Sum_probs=46.0

Q ss_pred             CCCCCCCCCCCCCCCCC-CCCCEEEECCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCC
Q ss_conf             89899875721488878-99987990566830032252676------468885012342022248
Q 001516          700 FSKEHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNA------KESTGPWYCELCEELLSS  757 (1062)
Q Consensus       700 ~~ke~~~~C~VC~~~E~-~~N~II~Cd~C~iaVHq~CYGi~------~ip~g~WlCd~C~~~~~~  757 (1062)
                      +..+..+.|.||+.... ..+.||+|++|...||+.|++.+      .++++.|+|..|......
T Consensus        11 ~~~~~~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~~~   75 (88)
T d1weva_          11 FAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR   75 (88)
T ss_dssp             CHHHHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHH
T ss_conf             54758599257899067899968884899974561127985554334558983899445733765
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure