Citrus Sinensis ID: 001534
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1058 | 2.2.26 [Sep-21-2011] | |||||||
| Q94AI7 | 1131 | Protein TOPLESS OS=Arabid | yes | no | 0.964 | 0.901 | 0.676 | 0.0 | |
| Q0WV90 | 1120 | Topless-related protein 1 | no | no | 0.925 | 0.874 | 0.688 | 0.0 | |
| Q27GK7 | 1135 | Topless-related protein 4 | no | no | 0.941 | 0.877 | 0.658 | 0.0 | |
| Q9LRZ0 | 1131 | Topless-related protein 2 | no | no | 0.933 | 0.873 | 0.662 | 0.0 | |
| Q84JM4 | 1108 | Topless-related protein 3 | no | no | 0.956 | 0.913 | 0.611 | 0.0 | |
| Q00808 | 1356 | Vegetative incompatibilit | yes | no | 0.296 | 0.231 | 0.270 | 4e-18 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.488 | 0.338 | 0.220 | 3e-14 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.468 | 0.294 | 0.218 | 3e-12 | |
| Q12788 | 808 | Transducin beta-like prot | yes | no | 0.450 | 0.590 | 0.209 | 5e-11 | |
| Q2KJJ5 | 800 | Transducin beta-like prot | yes | no | 0.430 | 0.568 | 0.217 | 1e-10 |
| >sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1444 bits (3739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 714/1056 (67%), Positives = 837/1056 (79%), Gaps = 36/1056 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+ DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DHSC P NGAR P P NNPL+G IPKAG FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGP-PNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QP SP P +AGWMSS S S+PHP+++AG PS LKHPRTP +DY S
Sbjct: 240 QPTASPVPTPLAGWMSSPS-SVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYPS 297
Query: 301 ADSDHLMKRIR-TGQSDEV---------SFAGVAH--TPNVYSQDDLTKTVVRTLNQGSN 348
ADS+H+ KR R G SDEV SF+G AH +P + DDL KTV RTL+QGS+
Sbjct: 298 ADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGSS 357
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDI+F+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C++TCGDDK IKVWD G K++TFEGHEAPVYSVCPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
D +GSRVDYDAPG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +D DGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLA 657
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708
V+ ++N IKI+ANSDG+RLL E + + SSKP IN++ A+ +A A
Sbjct: 658 VSGNENVIKIMANSDGLRLLHTFENISSE---------SSKP-AINSIAAAAAAAATSA- 706
Query: 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLP 767
DR VSI + D +VDVKP + E+ DK K W++ ++S+PSQ ++LRLP
Sbjct: 707 --GHADRSANVVSIQGMNG-DSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLP 763
Query: 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 827
+++ +K+ RLI+TNSG ++LALASNA+H LWKWQR ERN +GKATA++ PQ WQP SG
Sbjct: 764 ENLRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGI 823
Query: 828 LMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFL 887
LMTND+ E+ P EE+ C ALSKNDSYVMSASGGK+SLFNMMTFK M FM PPPAATFL
Sbjct: 824 LMTNDVAETNP-EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 882
Query: 888 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947
AFHPQDNNIIAIGM+DS++QIYNVRVDEVK+KLKGH RITGLAFS LN LVSSGADAQ
Sbjct: 883 AFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ 942
Query: 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLEC 1006
LC+W+ D WEK +S+ + P GR + +T+VQFH DQ H LVVHE+Q+++Y+ +KLEC
Sbjct: 943 LCVWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLEC 1002
Query: 1007 SRSVSFL-SLCPY---VFGVSSIFLLSTLTKLSVAV 1038
+ + SL P F S + ++ +V V
Sbjct: 1003 MKQWAVRESLAPITHATFSCDSQLVYASFMDATVCV 1038
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Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1444 bits (3737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 704/1022 (68%), Positives = 820/1022 (80%), Gaps = 43/1022 (4%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DHSC N AR P P NNPL+G +PKA FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCR-LPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QP SP P +AGWMSS S S+PHP+++ GP PS LKHPRTP + +DY S
Sbjct: 240 QPTPSPVPTPLAGWMSSPS-SVPHPAVSGGPIALGAPSIQAA-LKHPRTPPSNSAVDYPS 297
Query: 301 ADSDHLMKRIR-TGQSDEVS---------FAGVAHTPN--VYSQDDLTKTVVRTLNQGSN 348
DSDH+ KR R G SDEVS F G AH N + DDL KTV RTL+QGS+
Sbjct: 298 GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSS 357
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDIAF+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C+ TCGDDK IKVWD G K+YTFEGHEAPVYS+CPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
D +GSRVDY+APG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +DADGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708
V+ +DN IK++ANSDG+RLL +E + + SSKP IN++ P
Sbjct: 658 VSANDNMIKVMANSDGLRLLHTVENLSSE---------SSKP-AINSI-----------P 696
Query: 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLP 767
+ERP VSI + D +VDVKP + E+ DK K W++ ++ +PSQ ++LRLP
Sbjct: 697 MVERPAS---VVSIPGMNG-DSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLP 752
Query: 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 827
+++ +K+ RLI+TNSG ++LALASNA+H LWKWQR +RN +GKATA++ PQ WQP SG
Sbjct: 753 ENMRVTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGI 812
Query: 828 LMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFL 887
LMTND+ E+ P EE+ C ALSKNDSYVMSASGGK+SLFNMMTFK M FM PPPAATFL
Sbjct: 813 LMTNDVAETNP-EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 871
Query: 888 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947
AFHPQDNNIIAIGM+DS++QIYNVRVDEVK+KLKGH RITGLAFS LN LVSSGADAQ
Sbjct: 872 AFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ 931
Query: 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLEC 1006
LC+W+ D WEK KS+ +Q P GR + + +T+VQFH DQ H LVVHE+Q+++Y+ +KLEC
Sbjct: 932 LCVWNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLEC 991
Query: 1007 SR 1008
+
Sbjct: 992 MK 993
|
Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1395 bits (3612), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 672/1020 (65%), Positives = 813/1020 (79%), Gaps = 24/1020 (2%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFK+TVH+LE+ESGFFFNM++FED V AGEWD+VE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD++D AKAV+ILVK+LKVFS+FNEELFKEIT LLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L NFR+NEQLSKYGDTKSAR IML ELKKLIEANPLFRDKL FPS K+SRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DH+C NGA P PT N L+G +PK G FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHTCG-HPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKH--PRTP-TGMTGMD 297
QP +P ++AGWM + PS+ HP+++AGP G P+SAV LK PR+P T MD
Sbjct: 240 QPTPAPLTTSLAGWMPN--PSVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLSMD 297
Query: 298 YQSADSDHLMKRIRT-GQSD----------EVSFAGVAHTPNVYSQDDLTKTVVRTLNQG 346
YQ+ADS+ ++KR R G SD V++ G +H YS DDL K V R L+QG
Sbjct: 298 YQTADSESVLKRPRPFGISDGVNNLPVNVLPVTYPGQSHAHATYSTDDLPKNVSRILSQG 357
Query: 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406
S + SMDFHP QQT+LLVGTN+GDI++WEVGSRE+L + FKVWD++ ++ LQ +L ++
Sbjct: 358 SAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQASLASE 417
Query: 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466
+VNR VW PDG +LGVA+SKHIVH+Y+Y+ +LR HLEIDAH G VND+AF+ PN+
Sbjct: 418 YTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQPNQ 477
Query: 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
QLC+VTCG+DK IKVWD V G K +TFEGHEAPVYSVCPH KE+IQFIFSTA+DGKIKAW
Sbjct: 478 QLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIKAW 537
Query: 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586
LYD +GSRVDYDAPG CT MAY ADGTRLFSCGTSKEGES +VEWNESEGA+KRTY G
Sbjct: 538 LYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVKRTYLGL 597
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646
KRS+GVVQFDT +N+FL AGDEFQ+KFWDMD++++L++ A+GGLP+SP LR NKEG+L
Sbjct: 598 GKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRINKEGTL 657
Query: 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAI 706
LAV+T+DNGIKILAN++G R+L + R +D +R P ++ P+ +G +++
Sbjct: 658 LAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPI----VGTFGTPNSST 713
Query: 707 APTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766
+L +R P S++ L D L DVKPR+A+D +K K+W++ +IS+ SQ++ LRL
Sbjct: 714 GMSLSMGERSGPVASVTGLNG-DNRSLPDVKPRIADDAEKSKTWKLTEISERSQLRTLRL 772
Query: 767 PDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSG 826
PD++ ++VV+LIYTNSG ++LALA NA HKLWKWQ++ERN GKA +NV PQLWQP SG
Sbjct: 773 PDTLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPSSG 832
Query: 827 TLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATF 886
LMTND E E+ C ALSKNDSYVMSASGGK+SLFNMMTFK MT FM+PPPAAT
Sbjct: 833 VLMTNDTREGN-KEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATS 891
Query: 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA 946
LAFHPQDNNIIAIGM+DSS+QIYNVRVDEVK+KLKGHQ R+TGLAFS LN LVSSGAD+
Sbjct: 892 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADS 951
Query: 947 QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLE 1005
QLC+WS+D WEK S+ IQ P+G + T+VQFH DQ H+LVVH SQ+++Y++ KLE
Sbjct: 952 QLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKLE 1011
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1348 bits (3489), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 672/1014 (66%), Positives = 804/1014 (79%), Gaps = 26/1014 (2%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKE+VHKLEQESGFFFN+K+FE++ AGEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DRAKAVEIL KDLKVF++FNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR+IM ELKKLIEANPLFR+KL+FPSFK+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAH-GP 239
WQHQLCKNPRPNPDIKTLF DHSC+P SNGAR P N P V + + F P+G H GP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSP-SNGARALTPVNLP-VAAVARPSNFVPLGVHGGP 238
Query: 240 FQP--VVSPSPGAIAGWMSSNSPSLPHPS-MAAGPPGFVQPSSAVGFLKHPRTPTGMTG- 295
FQ +P+ A+AGWM++ +PS PS + A P +QPS V LKHPR P+ G
Sbjct: 239 FQSNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQ-VNELKHPRAPSNSLGL 297
Query: 296 MDYQSADSDHLMKRIRTGQ-SDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 354
MDYQSAD + LMKR+R+ Q S+EV++ +H P S DDL + VV T+ QGS V+SMDF
Sbjct: 298 MDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPP--ASLDDLPRNVVSTIRQGSVVISMDF 355
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414
HP T+L VG + G+++LWEVGSRE++ +PFK+W+++A S+ Q +++ + +ISV R
Sbjct: 356 HPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRV 415
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
W PDG +LGV+F+KH++H+Y Y + +LRQHLEIDAHVG VND+AFAHPNKQ+C+VTCG
Sbjct: 416 AWSPDGNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCG 474
Query: 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534
DDK+IKVWD ++G+K +TFEGHEAPVYS+CPH KE+IQFIFSTA+DGKIKAWLYD +GSR
Sbjct: 475 DDKLIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSR 533
Query: 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVV 594
VDYDAPG WCT M YSADG+RLFSCGTSKEG+S LVEWNESEGA+KRTY GFRK+S GVV
Sbjct: 534 VDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVV 593
Query: 595 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654
QFDTTRNRFLA G++ QIKFW+MDN N+LT V+A+GGLP PRLRFNK+G+LLAVTT+DN
Sbjct: 594 QFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADN 653
Query: 655 GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714
G KILAN+DG+R LR E R+ + ++ +S + ++ AS++S AI +E D
Sbjct: 654 GFKILANTDGLRTLRAFEARSFEASK------ASIDMKVSTSAMASSISPAIG-KIEHMD 706
Query: 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI-AAS 773
G PA I+ KPR + VDK K + +I DP+Q + + +PDS + S
Sbjct: 707 AGSPARPTPIPNGIEAMSRTMEKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKDSVS 766
Query: 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDI 833
KV RL+YTNSG+ +LAL SN V +LWKW R E+NP+GKATA+V PQ WQP SG LM ND+
Sbjct: 767 KVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDV 826
Query: 834 NESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQD 893
E+ E S CIALSKNDSYVMSA GGKVSLFNMMTFKVMT FM PPPA+TFLAFHPQD
Sbjct: 827 PENP--EGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQD 884
Query: 894 NNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953
NNIIAIGMEDSS+ IYNVRVDEVKTKLKGHQ ITGLAFS LN LVSSGADAQL W+
Sbjct: 885 NNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTA 944
Query: 954 DKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLEC 1006
D WEK KS IQ P G+ VG+T+VQFHNDQ LLV HE+Q+++YD SK+EC
Sbjct: 945 DSWEKKKSSAIQLPPGKAP--VGDTRVQFHNDQIQLLVSHETQLAIYDASKMEC 996
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1261 bits (3262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 643/1052 (61%), Positives = 786/1052 (74%), Gaps = 40/1052 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFL+EEKFKE+VH+LE+ESGFFFN K+F+++V AGEWD+VE YL GF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDRQ++AKAVEILV+DL+VFS+FNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L NFR+NEQLSKYGDTK+AR IML ELKKLIEANPLFRDKL FP+ +SSRLRTLINQSLN
Sbjct: 121 LQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAH-GP 239
WQHQLCKNPRPNPDIKTLFTDH+C NG P N P V + K +P +G H
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCT-LPNGPLAPSAVNQP-VTTLTKPAAYPSLGPHVPF 238
Query: 240 FQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGM-DY 298
+ + GA+A WM++ S + + P QP + + LK PRTP G+ DY
Sbjct: 239 PPGPAAANAGALASWMAAASGASAVQAAVVTPALMPQPQNQMSILKRPRTPPATPGIVDY 298
Query: 299 QSADSDHLMKRIRTGQS-DEVSF-AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHP 356
Q+ D + LMKR+R S +EV++ A P +S +DL L+QGS V SM+F+P
Sbjct: 299 QNPDHE-LMKRLRPAPSVEEVTYPAPRQQAP--WSLEDLPTKAALALHQGSTVTSMEFYP 355
Query: 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416
Q T+LLVG+ G+I+LWE+ +RERL +PFK+WD+S S Q + + ISV R W
Sbjct: 356 MQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIAKETPISVTRVAW 415
Query: 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476
PDG +GVAF+KH++ LY ++ +LRQH EIDAHVG VND+AFA+PN+QLC++TCGDD
Sbjct: 416 SPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANPNRQLCVITCGDD 475
Query: 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 536
K+IKVWD V+GRK +TFEGH+APVYS+CPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVD
Sbjct: 476 KLIKVWD-VSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIKAWLYDNLGSRVD 534
Query: 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596
YDAPG WCT M YSADGTRLFSCGTSK+G+S LVEWNESEG+IKRTY F+K+ GVVQF
Sbjct: 535 YDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYKEFQKKLAGVVQF 594
Query: 597 DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656
DT++N FLA G++ QIKFWDM+N+N+LT+ DA+GGLPA P LRFNK+G+LLAVTT+DNG
Sbjct: 595 DTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNKDGNLLAVTTADNGF 654
Query: 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716
KILAN G R LR +E A + R P + + P P ++V+ + +RG
Sbjct: 655 KILANPAGFRSLRAMETPASETMRTPVD-FKAVP-----GAPVASVNCKV-------ERG 701
Query: 717 PPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAAS-KV 775
P L +D S K R+ + DK KSW++ +I DPSQ LPD+ +S KV
Sbjct: 702 SPVRHSQMLNGVDPS-----KSRIDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKV 756
Query: 776 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE 835
V+L+YTNSG +LAL SN + +LWKW E+NPSGKATA V PQ WQP SG LMTND++
Sbjct: 757 VQLLYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMTNDVSG 816
Query: 836 SKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 895
E +A CIALSKNDSYVMSA+GGKVSLFNMMTFKVMT FM PPPA+TFLAFHPQDNN
Sbjct: 817 VN-LENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNN 875
Query: 896 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955
+IAIGMEDS++ IYNVRVDEVK+KLKGHQ RITGLAFS LN LVSSGADAQ+C WSID
Sbjct: 876 VIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDT 935
Query: 956 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLECSR------ 1008
WEK KS IQ PAG+ + G+T+VQFH DQ +LVVHE+Q++V+D SK+EC R
Sbjct: 936 WEKRKSVAIQMPAGKAAN--GDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQD 993
Query: 1009 SVSFLSLCPYVFGVSSIFLLSTLTKLSVAVHD 1040
S+S + V+ +S + +T ++ V D
Sbjct: 994 SLS-APISSAVYACNSQLIYTTFRDGNIGVFD 1024
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 97/359 (27%), Positives = 149/359 (41%), Gaps = 45/359 (12%)
Query: 308 KRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTL-NQGSNVMSMDFHPQQQTILLVGT 366
+R+ +G D HT ++ D + T +TL GS+V+S+ F P Q V +
Sbjct: 938 QRVASGSDD--------HTIKIW--DAASGTCTQTLEGHGSSVLSVAFSPDGQR---VAS 984
Query: 367 NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426
GD K K+WD ++ + L SV + PDG +
Sbjct: 985 GSGD--------------KTIKIWDTASGTC---TQTLEGHGGSVWSVAFSPDGQRVASG 1027
Query: 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486
+ ++ +G Q LE H G V + F+ P+ Q + + DD IK+WD V+
Sbjct: 1028 SDDKTIKIWD-TASGTCTQTLE--GHGGWVQSVVFS-PDGQR-VASGSDDHTIKIWDAVS 1082
Query: 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 546
G T EGH V+SV Q + S +IDG IK W + G W
Sbjct: 1083 GTCTQTLEGHGDSVWSVA--FSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVHS 1140
Query: 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606
+A+S DG R+ S S +G + W+ + G +T G + V F R +
Sbjct: 1141 VAFSPDGQRVAS--GSIDGTIKI--WDAASGTCTQTLEG-HGGWVQSVAFSPDGQRVASG 1195
Query: 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665
+ IK WD + T++ GG S + F+ +G +A +SDN IKI + G
Sbjct: 1196 SSDKTIKIWDTASGTCTQTLEGHGGWVQS--VAFSPDGQRVASGSSDNTIKIWDTASGT 1252
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 137/621 (22%), Positives = 236/621 (38%), Gaps = 104/621 (16%)
Query: 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLND 406
+V+++ F P + + G + G + WE + +E L K W
Sbjct: 866 SVLTVAFSPDGK-LFATGDSGGIVRFWEAATGKELLTCKGHNSW---------------- 908
Query: 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466
VN + DG ML V L+ + L+ H V + F+ PN
Sbjct: 909 ----VNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKT---FKGHTSRVRSVVFS-PNS 960
Query: 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
L + + D+ +++WD+ +G Y F+GH VYSV + S+ + + + D ++ W
Sbjct: 961 -LMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSM--LATGSGDQTVRLW 1017
Query: 527 LYDYLGSRVDYDAPGNWCTM--MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584
D S+ Y G+ + + +S+DG L S + + W+ S G T
Sbjct: 1018 --DISSSQCFYIFQGHTSCVRSVVFSSDGAML----ASGSDDQTVRLWDISSGNCLYTLQ 1071
Query: 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644
G VV F + GD+ ++ WD+ + N L T+ + +RF
Sbjct: 1072 GHTSCVRSVV-FSPDGAMLASGGDDQIVRLWDISSGNCLYTLQG-----YTSWVRF---- 1121
Query: 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSA 704
+ S NG+ LAN +++R+ + ISSK G + V+A
Sbjct: 1122 ----LVFSPNGVT-LANGSSDQIVRLWD-------------ISSKKCLYTLQGHTNWVNA 1163
Query: 705 AIAPTLERPDRGPPAVSISSLGTIDGSRLVDV-KPRVAEDVDKIKSWRIPDISDPSQIKA 763
P +++S RL D+ + + SW + +P
Sbjct: 1164 VAFS--------PDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTL 1215
Query: 764 LRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP----Q 819
S ++ + VRL NS L H W NP G A+ + +
Sbjct: 1216 A----SGSSDQTVRLWEINSSKCLCTFQG---HTSWV-NSVVFNPDGSMLASGSSDKTVR 1267
Query: 820 LWQPPSGTLM------TNDINESKPTEESAACIALSKNDSYVMSASGGK-VSLFNMMTFK 872
LW S + TN +N +A + + S + S SG + V L+ + + K
Sbjct: 1268 LWDISSSKCLHTFQGHTNWVNS----------VAFNPDGSMLASGSGDQTVRLWEISSSK 1317
Query: 873 VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAF 932
+ F + + F P D ++A G +D +V+++++ E GH N + + F
Sbjct: 1318 CLHTFQGHTSWVSSVTFSP-DGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIF 1376
Query: 933 SPTLNALVSSGADAQLCMWSI 953
SP L S D + +WSI
Sbjct: 1377 SPDGAILASGSGDQTVRLWSI 1397
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 129/590 (21%), Positives = 224/590 (37%), Gaps = 94/590 (15%)
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463
LN +V + PDG + S + L+ + L+ I H VN++ F+
Sbjct: 1109 LNGHEDAVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLK---TITGHEQTVNNVYFSP 1165
Query: 464 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523
K L + D IK+WD +G+ T GH A V +V Q I + + D +
Sbjct: 1166 DGKNLA--SASSDHSIKLWDTTSGQLLMTLTGHSAGVITV--RFSPDGQTIAAGSEDKTV 1221
Query: 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583
K W + +W +++S DG L S K + W ++G + +T
Sbjct: 1222 KLWHRQDGKLLKTLNGHQDWVNSLSFSPDGKTLASASADKT----IKLWRIADGKLVKTL 1277
Query: 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643
G S+ V F + +A + IK W+ + + T GG+ A + F +
Sbjct: 1278 KG-HNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYA---VNFLPD 1333
Query: 644 GSLLAVTTSDNGIK-----------ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLT 692
+++A + DN I+ +LA + GV + L ++
Sbjct: 1334 SNIIASASLDNTIRLWQRPLISPLEVLAGNSGVYAVSFLHDGSI---------------- 1377
Query: 693 INALGPASNVS------AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDK 746
I G N+ ++ TL ++ +S + G + S D
Sbjct: 1378 IATAGADGNIQLWHSQDGSLLKTLP-GNKAIYGISFTPQGDLIASANAD---------KT 1427
Query: 747 IKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW-----KW 801
+K WR+ D +K L D+ +V ++ ++ G +L + + + KLW K+
Sbjct: 1428 VKIWRV---RDGKALKTLIGHDN----EVNKVNFSPDGKTLASASRDNTVKLWNVSDGKF 1480
Query: 802 QRTER-----------NPSGK----ATANVAPQLWQPPSGTLMTNDINESKPTEESAA-C 845
++T + +P GK A+A+ +LW SG L+ +S P
Sbjct: 1481 KKTLKGHTDEVFWVSFSPDGKIIASASADKTIRLWDSFSGNLI-----KSLPAHNDLVYS 1535
Query: 846 IALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 904
+ + + S + S S K V L+ ++ F +F P D IA ED
Sbjct: 1536 VNFNPDGSMLASTSADKTVKLWRSHDGHLLHTFSGHSNVVYSSSFSP-DGRYIASASEDK 1594
Query: 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 954
+V+I+ + + T L HQ + FSP L+S D +W D
Sbjct: 1595 TVKIWQID-GHLLTTLPQHQAGVMSAIFSPDGKTLISGSLDTTTKIWRFD 1643
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q12788|TBL3_HUMAN Transducin beta-like protein 3 OS=Homo sapiens GN=TBL3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 110/526 (20%), Positives = 203/526 (38%), Gaps = 49/526 (9%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI 511
H V +AF P L + T G D ++VWD+V + F G V+ V H +
Sbjct: 108 HTAPVATMAF-DPTSTL-LATGGCDGAVRVWDIVRHYGTHHFRGSPGVVHLVAFHPDPTR 165
Query: 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571
+FS+A D I+ W A + T +A+SADG + S G K +
Sbjct: 166 LLLFSSATDAAIRVWSLQDRSCLAVLTAHYSAVTSLAFSADGHTMLSSGRDKI----CII 221
Query: 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNR---------FLAAGDEFQIKFWD-MDNMN 621
W+ RT F V+ + ++ FL AGD+ ++ W+
Sbjct: 222 WDLQSCQATRTVPVFESVEAAVLLPEEPVSQLGVKSPGLYFLTAGDQGTLRVWEAASGQC 281
Query: 622 MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRC 681
+ T G ++ T+D+ + +L + +RL + G
Sbjct: 282 VYTQAQPPGPGQELTHCTLAHTAGVVLTATADHNL-LLYEARSLRLQKQFAG-------- 332
Query: 682 PSEPISSKPLTINALGPASN--VSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV--K 737
S + L + LGP + V A+ +P L+ + A I G D +DV K
Sbjct: 333 ----YSEEVLDVRFLGPEDSHVVVASNSPCLKVFELQTSACQILH-GHTDIVLALDVFRK 387
Query: 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-NAVH 796
+ K +S RI ++ Q+ + S V + + S L S +
Sbjct: 388 GWLFASCAKDQSVRIWRMNKAGQVMCVA-QGSGHTHSVGTVCCSRLKESFLVTGSQDCTV 446
Query: 797 KLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 856
KLW P + N AP +G ++ + ++ +A++ ND +
Sbjct: 447 KLWPL------PKALLSKNTAPD-----NGPILLQAQTTQRCHDKDINSVAIAPNDKLLA 495
Query: 857 SASGGKVS-LFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915
+ S + + L+ + +++ +F + F P D ++A D +++++ ++
Sbjct: 496 TGSQDRTAKLWALPQCQLLGVFSGHRRGLWCVQFSPMD-QVLATASADGTIKLWALQDFS 554
Query: 916 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961
+GH + +AF L+SSG+D + +W+I E +++
Sbjct: 555 CLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLVKLWTIKNNECVRT 600
|
Homo sapiens (taxid: 9606) |
| >sp|Q2KJJ5|TBL3_BOVIN Transducin beta-like protein 3 OS=Bos taurus GN=TBL3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 119/548 (21%), Positives = 203/548 (37%), Gaps = 93/548 (16%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI 511
H V +AF P L + T G D ++VWDVV + F G V+ V H +
Sbjct: 108 HTAPVATMAF-DPTSTL-LATGGCDGAVRVWDVVRCYGTHHFRGSPGVVHLVAFHPDPAR 165
Query: 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571
+FS+A D I+ W A + T + +SADG + S G K V
Sbjct: 166 LLLFSSAADTSIRVWSLQERSCLAVLTAHYSAVTSLTFSADGHTMLSSGRDKI----CVI 221
Query: 572 WNESEGAIKRTYSGFRKRSLGV---------VQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
W+ RT F V + + FL AGD+ ++ W+ +
Sbjct: 222 WDLRSLQATRTVPVFESVEAAVLLPEEPAPELGVKSAGLHFLTAGDQGALRVWEAASGRC 281
Query: 623 LTTVDADGGLPASPRLR-----------FNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671
+ A RLR + G LL+VT N +L ++ +RL +
Sbjct: 282 ---------VHAQQRLRGPGRELTHCTLAHAAGLLLSVTADHN--LLLYDARSLRLRKQF 330
Query: 672 EGRAMDKNRCPSEPISSKPLTINALGPASN--VSAAIAPTLERPDRGPPAVSISSLGTID 729
G S + L + LGP + V A+ +P L+ D A I G D
Sbjct: 331 AG------------YSEEVLDVRFLGPEDSHVVVASNSPCLKVFDLQTSACQILH-GHTD 377
Query: 730 GSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN-SG-LSL 787
+DV + RL S A + +R+ N SG ++
Sbjct: 378 IVLALDV------------------------FRKGRLFASCAKDQSIRVWRMNKSGEVAC 413
Query: 788 LALASNAVHKLWK--WQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT----EE 841
+A S H + R + + + +LW P L +E P +
Sbjct: 414 VAQGSGHTHSVGTICCSRLKETFLVTGSQDCTVKLWPLPEALLSKGTGHEGGPVFLQAQA 473
Query: 842 SAAC-------IALSKNDSYVMSASGGKVS-LFNMMTFKVMTMFMSPPPAATFLAFHPQD 893
+ C +A++ ND + + S + + L+ + +++ F + F P D
Sbjct: 474 TQHCHDKDINSVAVAPNDKLLATGSQDRTAKLWALPRCQLLGTFSGHRRGLWCVQFSPMD 533
Query: 894 NNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953
++A D +++++ ++ +GH + +AF L+SSG+D L +W+I
Sbjct: 534 -QVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLLKLWTI 592
Query: 954 DKWEKLKS 961
E +++
Sbjct: 593 KNNECVRT 600
|
Bos taurus (taxid: 9913) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1058 | ||||||
| 255557965 | 1137 | conserved hypothetical protein [Ricinus | 0.953 | 0.887 | 0.909 | 0.0 | |
| 225454832 | 1135 | PREDICTED: protein TOPLESS [Vitis vinife | 0.982 | 0.915 | 0.845 | 0.0 | |
| 224128866 | 1099 | predicted protein [Populus trichocarpa] | 0.919 | 0.885 | 0.852 | 0.0 | |
| 115474917 | 1133 | Os08g0162100 [Oryza sativa Japonica Grou | 0.954 | 0.891 | 0.777 | 0.0 | |
| 357144889 | 1135 | PREDICTED: topless-related protein 1-lik | 0.949 | 0.885 | 0.781 | 0.0 | |
| 37806272 | 1150 | WD-40 repeat protein-like [Oryza sativa | 0.954 | 0.878 | 0.763 | 0.0 | |
| 304555573 | 1141 | ramosa 1 enhancer locus 2 [Zea mays] gi| | 0.949 | 0.880 | 0.780 | 0.0 | |
| 242078279 | 1136 | hypothetical protein SORBIDRAFT_07g00418 | 0.929 | 0.865 | 0.777 | 0.0 | |
| 168031165 | 1158 | predicted protein [Physcomitrella patens | 0.947 | 0.865 | 0.735 | 0.0 | |
| 168060004 | 1102 | predicted protein [Physcomitrella patens | 0.909 | 0.872 | 0.742 | 0.0 |
| >gi|255557965|ref|XP_002520011.1| conserved hypothetical protein [Ricinus communis] gi|223540775|gb|EEF42335.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1922 bits (4978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 919/1010 (90%), Positives = 967/1010 (95%), Gaps = 1/1010 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEIL KDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILCKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKL+FP+FKSSRLRTLINQSLN
Sbjct: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLTFPAFKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNP-TSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGP 239
WQHQLCKNPRPNPDIKTLFTDHSC+P T+NGARPPPPTN+P+VGPIPKAG FPPIGAHGP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCSPSTANGARPPPPTNSPIVGPIPKAGAFPPIGAHGP 240
Query: 240 FQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQ 299
FQPVVSPSPGAIAGWMSSN+PSLPHP++AAGPPG VQPSSA FLKHPRTPTGMTG+DYQ
Sbjct: 241 FQPVVSPSPGAIAGWMSSNNPSLPHPAVAAGPPGLVQPSSAAAFLKHPRTPTGMTGIDYQ 300
Query: 300 SADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQ 359
SADS+HLMKR+RTGQSDEVSF+GVAHTPNVYS DDL KTV+R+L+QGSNVMSMDFHPQQQ
Sbjct: 301 SADSEHLMKRMRTGQSDEVSFSGVAHTPNVYSPDDLPKTVMRSLSQGSNVMSMDFHPQQQ 360
Query: 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419
TILLVGTNVGDISLWEVGSRERLAHKPFKVWD+SAASMPLQ ALLNDAAISVNRCVWGPD
Sbjct: 361 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDLSAASMPLQAALLNDAAISVNRCVWGPD 420
Query: 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479
GLMLGVAFSKHIV LY YNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI
Sbjct: 421 GLMLGVAFSKHIVQLYAYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 480
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 539
KVWD VAGR+QYTFEGHEAPVYSVCPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDA
Sbjct: 481 KVWDAVAGRRQYTFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDSLGSRVDYDA 540
Query: 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599
PG WCTMMAYSADG+RLFSCGTSKEGESHLVEWNESEG IKRTYSGFRKRS GVVQFDTT
Sbjct: 541 PGLWCTMMAYSADGSRLFSCGTSKEGESHLVEWNESEGTIKRTYSGFRKRSSGVVQFDTT 600
Query: 600 RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659
R+RFLAAGDEFQIKFWDMDN NMLT VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL
Sbjct: 601 RSRFLAAGDEFQIKFWDMDNTNMLTAVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 660
Query: 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719
ANSDG+RL+RMLE RA+DKNR PSEPI+SKPL +NALGP +NVS+ +A LER DR PPA
Sbjct: 661 ANSDGLRLIRMLESRAIDKNRSPSEPINSKPLIVNALGPVANVSSGLATALERVDRMPPA 720
Query: 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779
V+ISSLGT+D SRLVDVKPR+++++DKIKSW+IPDI D S +KALRLPDSIA KVVRLI
Sbjct: 721 VAISSLGTMDSSRLVDVKPRISDELDKIKSWKIPDIVDQSHLKALRLPDSIATGKVVRLI 780
Query: 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839
YTNSGL+LLALASNAVHKLWKWQR+ERNPSGKATA VAPQLWQPPSGTLMTNDI++SKP
Sbjct: 781 YTNSGLALLALASNAVHKLWKWQRSERNPSGKATAYVAPQLWQPPSGTLMTNDISDSKPA 840
Query: 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 899
EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FMSPPPAATFLAFHPQDNNIIAI
Sbjct: 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMSPPPAATFLAFHPQDNNIIAI 900
Query: 900 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959
GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS +LN LVSSGADAQLC+WSID WEK
Sbjct: 901 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSQSLNVLVSSGADAQLCVWSIDGWEKK 960
Query: 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRS 1009
KSRFIQAP GRQSPL GETKVQFHNDQTHLLVVHESQI++YDSKLEC RS
Sbjct: 961 KSRFIQAPPGRQSPLAGETKVQFHNDQTHLLVVHESQIAIYDSKLECLRS 1010
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454832|ref|XP_002275116.1| PREDICTED: protein TOPLESS [Vitis vinifera] gi|297737353|emb|CBI26554.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1859 bits (4816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 884/1045 (84%), Positives = 954/1045 (91%), Gaps = 6/1045 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFRQNEQLSKYGDTKSAR IML+ELKKLIEANPLFRDKL+FP+FK+SRLRTLINQSLN
Sbjct: 121 LENFRQNEQLSKYGDTKSARGIMLIELKKLIEANPLFRDKLTFPAFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPR NPDIKTLFTDH+C PT NGARPPPPTNNPLVGPIPKAG FPPIGAH PF
Sbjct: 181 WQHQLCKNPRSNPDIKTLFTDHACTPT-NGARPPPPTNNPLVGPIPKAGAFPPIGAHNPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QPVVSPSPGAIAGWMSS +PSLPH ++AAGPP VQPS+A FLKH RTPTG+TGMDYQS
Sbjct: 240 QPVVSPSPGAIAGWMSSTNPSLPHAAVAAGPPSLVQPSTAAAFLKHQRTPTGVTGMDYQS 299
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
DS+HLMKRIRTGQSDEVSF+GVAH PNVYSQDDL K+VVRT+ QGSNVMSMDFHPQQQT
Sbjct: 300 GDSEHLMKRIRTGQSDEVSFSGVAHAPNVYSQDDLPKSVVRTITQGSNVMSMDFHPQQQT 359
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
+LLVGTNVGDISLWEVGSRERLAHKPFKVWDISA SMPLQ ALL DA ISVNRCVWGPDG
Sbjct: 360 VLLVGTNVGDISLWEVGSRERLAHKPFKVWDISACSMPLQTALLKDATISVNRCVWGPDG 419
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
L+LGVAFSKHIV +YTYNPTGELRQHLEIDAH+GGVND+AFAHPNKQLCIVTCGDDK IK
Sbjct: 420 LILGVAFSKHIVQIYTYNPTGELRQHLEIDAHIGGVNDVAFAHPNKQLCIVTCGDDKTIK 479
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540
VWD GR+ YTFEGHEAPVYSVCPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 480 VWDAQTGRRLYTFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 539
Query: 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600
G+WCTMMAYSADGTRLFSCGTSK+GESHLVEWNESEGAIKRTY GFRKRSLGVVQFDTTR
Sbjct: 540 GHWCTMMAYSADGTRLFSCGTSKDGESHLVEWNESEGAIKRTYLGFRKRSLGVVQFDTTR 599
Query: 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660
NRFLAAGDEFQIKFWDMDN N+LT V+A+GGLPASPRLRFNKEGSLLAVTT+DNGIKILA
Sbjct: 600 NRFLAAGDEFQIKFWDMDNTNILTAVEAEGGLPASPRLRFNKEGSLLAVTTNDNGIKILA 659
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
N+DG+RL RMLE R M+ +R PSEPI+SKPL +NALGPA+NVSAA++P+LER DR PAV
Sbjct: 660 NNDGLRLTRMLESRPMEGHRGPSEPINSKPLIVNALGPAANVSAAMSPSLERSDRIQPAV 719
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIY 780
SI++L T+D SRLVDVKP++++D++KIKSW+IPDI D SQ+KALRLPD + KVVRLIY
Sbjct: 720 SINNLATMDSSRLVDVKPKISDDLEKIKSWKIPDIVDQSQLKALRLPDPVTTGKVVRLIY 779
Query: 781 TNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 840
TNSGL+LLAL SNAVHKLWKWQR+ERNP GK+TA V PQLWQP +GTLMTND ++ P E
Sbjct: 780 TNSGLALLALISNAVHKLWKWQRSERNPLGKSTAYVVPQLWQPANGTLMTNDTGDNNPPE 839
Query: 841 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG 900
ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FMSPPPAATFLAFHPQDNNIIAIG
Sbjct: 840 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMSPPPAATFLAFHPQDNNIIAIG 899
Query: 901 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960
MEDS++QIYNVRVDEVKTKLKGHQ R+TGLAFS LN LVSSGADAQLC+WSID WEK K
Sbjct: 900 MEDSTIQIYNVRVDEVKTKLKGHQKRVTGLAFSQILNCLVSSGADAQLCVWSIDGWEKRK 959
Query: 961 SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSVSFLSLCP--- 1017
SRFIQAPAGR SPLVG+TKVQFHNDQ HLLVVHESQI+VYDSKLEC RS S P
Sbjct: 960 SRFIQAPAGRSSPLVGDTKVQFHNDQAHLLVVHESQIAVYDSKLECVRSWSPKDSLPAPI 1019
Query: 1018 --YVFGVSSIFLLSTLTKLSVAVHD 1040
++ S+ + + +V V D
Sbjct: 1020 SSAIYSCDSMLVYAGFGDGAVGVFD 1044
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128866|ref|XP_002328986.1| predicted protein [Populus trichocarpa] gi|222839220|gb|EEE77571.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1793 bits (4644), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 863/1012 (85%), Positives = 915/1012 (90%), Gaps = 39/1012 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDE+ERYLCGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEIERYLCGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKL+FP FKSSRLRTLINQSLN
Sbjct: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLTFPPFKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTS-NGARPPPPTNNPLVGPIPKAGQFPPIGAHGP 239
WQHQLCKNPR NPDIKTLF DHSC PT+ NGA PPPP+N PLVGPIPKAG FPPIGAHGP
Sbjct: 181 WQHQLCKNPRSNPDIKTLFIDHSCTPTTANGAHPPPPSNTPLVGPIPKAGAFPPIGAHGP 240
Query: 240 FQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQ 299
FQPVVSP+PGAIAGWMS+N+PSLPHP++AAGPP VQPSSA FLKHPRTPTGMTGM+YQ
Sbjct: 241 FQPVVSPTPGAIAGWMSANNPSLPHPAVAAGPPTLVQPSSAAAFLKHPRTPTGMTGMNYQ 300
Query: 300 SADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQ 359
SADS+HLMKR+R GQS+EVSF+G+AHTPN+YSQDDL KTVVRTLNQGSNVMSMDFHPQ Q
Sbjct: 301 SADSEHLMKRMRPGQSEEVSFSGIAHTPNIYSQDDLPKTVVRTLNQGSNVMSMDFHPQHQ 360
Query: 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419
TILLVGTNVGDISLWEVGSRERLAHKPFKVWD+SA+SMPLQ ALLNDAAISVNRCVWGPD
Sbjct: 361 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDLSASSMPLQTALLNDAAISVNRCVWGPD 420
Query: 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479
GLMLGVAFSKHIV +YTYNPTGE RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI
Sbjct: 421 GLMLGVAFSKHIVQIYTYNPTGEPRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 480
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 539
KVWD AG +QY FEGHEAPVYS+CPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDA
Sbjct: 481 KVWDAGAGGRQYIFEGHEAPVYSLCPHYKENIQFIFSTAIDGKIKAWLYDSLGSRVDYDA 540
Query: 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599
PG WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG+IKRTY GFRKRSL VVQFDTT
Sbjct: 541 PGLWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGSIKRTYLGFRKRSLDVVQFDTT 600
Query: 600 RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659
R+ FLAAGDEFQIKFWDMDN NMLT VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL
Sbjct: 601 RSHFLAAGDEFQIKFWDMDNTNMLTAVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 660
Query: 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719
A+SDG+RL+RMLE RA+DK+R PSEPI+SKPL +NALG +NVS+ +A +LER DR PA
Sbjct: 661 ASSDGLRLIRMLESRAIDKSRSPSEPINSKPLIVNALGSVANVSSGLASSLERSDRIQPA 720
Query: 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779
VSI +LGT+D SRLVDVKPR+++D DK+KSW+ DI D SQ+KALRLPDSI A
Sbjct: 721 VSIGNLGTMDNSRLVDVKPRISDDTDKLKSWK-SDIVDSSQLKALRLPDSIVA------- 772
Query: 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839
GKATA+ APQLWQPPSGT MTNDINESKP
Sbjct: 773 ------------------------------GKATASNAPQLWQPPSGTPMTNDINESKPA 802
Query: 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 899
EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FMSPPPAATFLAFHPQDNNIIAI
Sbjct: 803 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMSPPPAATFLAFHPQDNNIIAI 862
Query: 900 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959
GMEDS+VQIYNVRVDEVKTKLKGHQNRITGLAFS +LN LVSSGADAQLC+WSID WEK
Sbjct: 863 GMEDSTVQIYNVRVDEVKTKLKGHQNRITGLAFSQSLNVLVSSGADAQLCVWSIDGWEKK 922
Query: 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSVS 1011
K RFIQAP RQSPLVGET+VQFHNDQ HLLVVHESQI++YDSKLECSRS S
Sbjct: 923 KMRFIQAPPSRQSPLVGETRVQFHNDQAHLLVVHESQIAIYDSKLECSRSWS 974
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115474917|ref|NP_001061055.1| Os08g0162100 [Oryza sativa Japonica Group] gi|113623024|dbj|BAF22969.1| Os08g0162100 [Oryza sativa Japonica Group] gi|125560238|gb|EAZ05686.1| hypothetical protein OsI_27917 [Oryza sativa Indica Group] gi|371501278|dbj|BAL44266.1| ASP1 protein [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1679 bits (4349), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 787/1012 (77%), Positives = 888/1012 (87%), Gaps = 2/1012 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQES F+FNMKHFED VQ GEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESAFYFNMKHFEDLVQGGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK SRLRTLINQSLN
Sbjct: 121 LENFRQNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKVSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PLVGPIPK+ FPP+GAH PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPLVGPIPKSAAFPPMGAHAPF 240
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QPVVSPSP AIAGWM++ +PSLPH ++A GPPG VQP + FLKHPRTPT +DYQS
Sbjct: 241 QPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQPPNTAAFLKHPRTPTSAPAIDYQS 300
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
ADS+HLMKR+R GQ DEVSF+G +H N+Y+QDDL K VVR LNQGSNVMS+DFHP QQT
Sbjct: 301 ADSEHLMKRMRVGQPDEVSFSGASHPANIYTQDDLPKQVVRNLNQGSNVMSLDFHPVQQT 360
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
ILLVGTNVGDI +WEVGSRER+AHK FKVWDIS+ ++PLQ AL+ DAAISVNRC+W PDG
Sbjct: 361 ILLVGTNVGDIGIWEVGSRERIAHKTFKVWDISSCTLPLQAALMKDAAISVNRCLWSPDG 420
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
+LGVAFSKHIV Y + GELRQ EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IK
Sbjct: 421 SILGVAFSKHIVQTYAFVLNGELRQQAEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIK 480
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540
VWD G+KQYTFEGHEAPVYSVCPH+KESIQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 481 VWDAQTGQKQYTFEGHEAPVYSVCPHYKESIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 540
Query: 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600
G+WCT MAYSADGTRLFSCGTSK+G+SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTR
Sbjct: 541 GHWCTTMAYSADGTRLFSCGTSKDGDSHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTR 600
Query: 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660
NRFLAAGDEF +KFWDMDN N+LTT D DGGLPASPRLRFN+EGSLLAVT ++NGIKILA
Sbjct: 601 NRFLAAGDEFVVKFWDMDNTNILTTTDCDGGLPASPRLRFNREGSLLAVTANENGIKILA 660
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
N+DG RLLRMLE RA + +R P + I++KP +N LG SNVS+ +A ERPDR P V
Sbjct: 661 NTDGQRLLRMLESRAYEGSRGPPQQINTKPPIVNTLGSVSNVSSPMAVNSERPDRALPTV 720
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA-ASKVVRLI 779
S+S L +D SR DVKPR+ ++ +K+K+W++ DI D ++ALR+PD+ A +SKVVRL+
Sbjct: 721 SMSGLAPMDVSRTPDVKPRITDESEKVKTWKLADIGDSGHLRALRMPDTSATSSKVVRLL 780
Query: 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839
YTN+G++LLAL SNAVHKLWKWQRT+RNP+GK+TA+ PQ+WQP +G LM ND ++ P
Sbjct: 781 YTNNGVALLALGSNAVHKLWKWQRTDRNPNGKSTASFTPQMWQPANGILMANDTSDGNP- 839
Query: 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 899
EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM+PPPAATFLAFHPQDNNIIAI
Sbjct: 840 EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMAPPPAATFLAFHPQDNNIIAI 899
Query: 900 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959
GMEDS++QIYNVRVDEVK+KLKGH +ITGLAFS ++N LVSSGADAQLC WSID WEK
Sbjct: 900 GMEDSTIQIYNVRVDEVKSKLKGHSKKITGLAFSQSMNMLVSSGADAQLCAWSIDGWEKK 959
Query: 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSVS 1011
KSR+IQ+PA R LVG+T+VQFHNDQTH+LVVHESQ+++YD+KLEC RS S
Sbjct: 960 KSRYIQSPANRSGALVGDTRVQFHNDQTHILVVHESQLAIYDAKLECLRSWS 1011
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357144889|ref|XP_003573449.1| PREDICTED: topless-related protein 1-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 1674 bits (4335), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 789/1010 (78%), Positives = 890/1010 (88%), Gaps = 5/1010 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGF+FNMKHFED VQ GEWDEVERYL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFYFNMKHFEDMVQGGEWDEVERYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
LDNFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK+SRLRTLINQSLN
Sbjct: 121 LDNFRQNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PL GPIPK+ FPP+GAH PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPLAGPIPKSAGFPPMGAHAPF 240
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QPVV+P+ AIAGWM++ +PSLPH ++A GP G VQP + FLKHPRTPT G+DYQS
Sbjct: 241 QPVVTPN--AIAGWMTNANPSLPHAAVAQGPSGLVQPPNTAAFLKHPRTPTSAPGIDYQS 298
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
ADS+HLMKR+R GQ DEVSF+G +H PN YSQ+DL K VVRTLNQGSNVMS+DFHP QQT
Sbjct: 299 ADSEHLMKRMRVGQPDEVSFSGASHPPNAYSQEDLPKQVVRTLNQGSNVMSLDFHPVQQT 358
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
ILLVGTNVGDI +WEVGSRER+AHK FKVWDIS+ ++PLQ AL+ DAAISVNRC+W PDG
Sbjct: 359 ILLVGTNVGDIGIWEVGSRERIAHKTFKVWDISSCTLPLQAALMKDAAISVNRCLWSPDG 418
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
+LGVAFSKHIV YT+ P GELRQ EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IK
Sbjct: 419 NILGVAFSKHIVQTYTFVPNGELRQQAEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIK 478
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540
VWD G+KQYTFEGHEAPVYSVCPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 479 VWDAQTGQKQYTFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 538
Query: 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600
G+WCT M+YSADGTRLFSCGTSK+G+SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTR
Sbjct: 539 GHWCTTMSYSADGTRLFSCGTSKDGDSHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTR 598
Query: 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660
N FLAAGDEF +KFWDMDN N+LTT + DGGLPASPRLRFN+EGSLLAVT +DNGIKILA
Sbjct: 599 NHFLAAGDEFVVKFWDMDNTNILTTAECDGGLPASPRLRFNREGSLLAVTANDNGIKILA 658
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
N+DG RLLRMLE RA + +R P + I++KP IN LG ASNVS+ IA ERPDR PAV
Sbjct: 659 NTDGQRLLRMLESRAFEGSRGPQQ-INTKPPLINTLGSASNVSSPIAVNSERPDRMLPAV 717
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA-ASKVVRLI 779
S+S L +D SR DVKPR+ ++ +K+K+W++ DI D I+A R PD+ + SKVVRL+
Sbjct: 718 SMSGLAPMDVSRTQDVKPRITDEAEKMKTWKLSDIVDSGHIRARRCPDTASNPSKVVRLL 777
Query: 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839
YTN+G++LL+L SNA HKLWKWQR++RNP+GK+TA+++P LWQPP+G LMTND ++ P
Sbjct: 778 YTNNGIALLSLCSNAGHKLWKWQRSDRNPTGKSTASISPHLWQPPNGILMTNDTSDGNP- 836
Query: 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 899
EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM+PPPAATFLAFHPQDNNIIAI
Sbjct: 837 EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMAPPPAATFLAFHPQDNNIIAI 896
Query: 900 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959
GMEDS++QIYNVRVDEVK+KLKGHQ +ITGLAFS ++N LVSSGADAQLC+WSID WEK
Sbjct: 897 GMEDSTIQIYNVRVDEVKSKLKGHQKKITGLAFSQSMNVLVSSGADAQLCVWSIDGWEKK 956
Query: 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRS 1009
KSR+IQ PA LVG+T+VQFHNDQTH+LVVHESQ+++YD KLECSRS
Sbjct: 957 KSRYIQPPANHSGALVGDTRVQFHNDQTHVLVVHESQLAIYDGKLECSRS 1006
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|37806272|dbj|BAC99788.1| WD-40 repeat protein-like [Oryza sativa Japonica Group] gi|125602281|gb|EAZ41606.1| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1666 bits (4315), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 786/1029 (76%), Positives = 887/1029 (86%), Gaps = 19/1029 (1%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQES F+FNMKHFED VQ GEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESAFYFNMKHFEDLVQGGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQS-- 178
L+NFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK SRLRTLINQ
Sbjct: 121 LENFRQNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKVSRLRTLINQRDV 180
Query: 179 ---------------LNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVG 223
LNWQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PLVG
Sbjct: 181 ICMNNNVNIQIGNAPLNWQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPLVG 240
Query: 224 PIPKAGQFPPIGAHGPFQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGF 283
PIPK+ FPP+GAH PFQPVVSPSP AIAGWM++ +PSLPH ++A GPPG VQP + F
Sbjct: 241 PIPKSAAFPPMGAHAPFQPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQPPNTAAF 300
Query: 284 LKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTL 343
LKHPRTPT +DYQSADS+HLMKR+R GQ DEVSF+G +H N+Y+QDDL K VVR L
Sbjct: 301 LKHPRTPTSAPAIDYQSADSEHLMKRMRVGQPDEVSFSGASHPANIYTQDDLPKQVVRNL 360
Query: 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403
NQGSNVMS+DFHP QQTILLVGTNVGDI +WEVGSRER+AHK FKVWDIS+ ++PLQ AL
Sbjct: 361 NQGSNVMSLDFHPVQQTILLVGTNVGDIGIWEVGSRERIAHKTFKVWDISSCTLPLQAAL 420
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463
+ DAAISVNRC+W PDG +LGVAFSKHIV Y + GELRQ EIDAH+GGVNDIAF+H
Sbjct: 421 MKDAAISVNRCLWSPDGSILGVAFSKHIVQTYAFVLNGELRQQAEIDAHIGGVNDIAFSH 480
Query: 464 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523
PNK L I+TCGDDK+IKVWD G+KQYTFEGHEAPVYSVCPH+KESIQFIFSTAIDGKI
Sbjct: 481 PNKTLSIITCGDDKLIKVWDAQTGQKQYTFEGHEAPVYSVCPHYKESIQFIFSTAIDGKI 540
Query: 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583
KAWLYD LGSRVDYDAPG+WCT MAYSADGTRLFSCGTSK+G+SHLVEWNE+EGAIKRTY
Sbjct: 541 KAWLYDCLGSRVDYDAPGHWCTTMAYSADGTRLFSCGTSKDGDSHLVEWNETEGAIKRTY 600
Query: 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643
+GFRKRSLGVVQFDTTRNRFLAAGDEF +KFWDMDN N+LTT D DGGLPASPRLRFN+E
Sbjct: 601 NGFRKRSLGVVQFDTTRNRFLAAGDEFVVKFWDMDNTNILTTTDCDGGLPASPRLRFNRE 660
Query: 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703
GSLLAVT ++NGIKILAN+DG RLLRMLE RA + +R P + I++KP +N LG SNVS
Sbjct: 661 GSLLAVTANENGIKILANTDGQRLLRMLESRAYEGSRGPPQQINTKPPIVNTLGSVSNVS 720
Query: 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKA 763
+ +A ERPDR P VS+S L +D SR DVKPR+ ++ +K+K+W++ DI D ++A
Sbjct: 721 SPMAVNSERPDRALPTVSMSGLAPMDVSRTPDVKPRITDESEKVKTWKLADIGDSGHLRA 780
Query: 764 LRLPDSIA-ASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 822
LR+PD+ A +SKVVRL+YTN+G++LLAL SNAVHKLWKWQRT+RNP+GK+TA+ PQ+WQ
Sbjct: 781 LRMPDTSATSSKVVRLLYTNNGVALLALGSNAVHKLWKWQRTDRNPNGKSTASFTPQMWQ 840
Query: 823 PPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPP 882
P +G LM ND ++ P EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM+PPP
Sbjct: 841 PANGILMANDTSDGNP-EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMAPPP 899
Query: 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 942
AATFLAFHPQDNNIIAIGMEDS++QIYNVRVDEVK+KLKGH +ITGLAFS ++N LVSS
Sbjct: 900 AATFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKSKLKGHSKKITGLAFSQSMNMLVSS 959
Query: 943 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002
GADAQLC WSID WEK KSR+IQ+PA R LVG+T+VQFHNDQTH+LVVHESQ+++YD+
Sbjct: 960 GADAQLCAWSIDGWEKKKSRYIQSPANRSGALVGDTRVQFHNDQTHILVVHESQLAIYDA 1019
Query: 1003 KLECSRSVS 1011
KLEC RS S
Sbjct: 1020 KLECLRSWS 1028
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|304555573|ref|NP_001167872.2| ramosa 1 enhancer locus 2 [Zea mays] gi|303387473|gb|ADM15670.1| ramosa 1 enhancer locus 2 [Zea mays] gi|303387475|gb|ADM15671.1| ramosa 1 enhancer locus 2 [Zea mays] gi|413917313|gb|AFW57245.1| ramosa1 enhancer locus2 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 1665 bits (4313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 788/1009 (78%), Positives = 886/1009 (87%), Gaps = 4/1009 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGF+FNMKHFED VQ GEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFYFNMKHFEDLVQGGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK+SRLRTLINQSLN
Sbjct: 121 LENFRQNEQLSKYGDTKSARNIMLLELKKLIEANPLFRDKLNFPPFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PL G IPK+ FPP+GAH PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPL-GSIPKSAGFPPMGAHAPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QPVVSPSP AIAGWM++ +PSLPH ++A GPPG VQ + FLKHPRTPT G+DYQS
Sbjct: 240 QPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQAPNTAAFLKHPRTPTSAPGIDYQS 299
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
ADS+HLMKR+R GQ DEVSF+G +H N+Y+Q+DL K V RTLNQGSNVMS+DFHP QQT
Sbjct: 300 ADSEHLMKRMRVGQPDEVSFSGASHPANMYTQEDLPKQVSRTLNQGSNVMSLDFHPVQQT 359
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
ILLVGTNVGDI++WEVGSRER+AHK FKVWDI + ++PLQ +L+ DAA+SVNRC+W PDG
Sbjct: 360 ILLVGTNVGDIAVWEVGSRERIAHKTFKVWDIGSCTLPLQASLMKDAAVSVNRCLWSPDG 419
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
+LGVAFSKHIV YT+ P G+LRQ EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IK
Sbjct: 420 TILGVAFSKHIVQTYTFVPNGDLRQQAEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIK 479
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540
VWD G+KQYTFEGHEAPVYSVCPH+KESIQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 480 VWDAQTGQKQYTFEGHEAPVYSVCPHYKESIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 539
Query: 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600
G+WCT MAYSADGTRLFSCGTSKEG+SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTR
Sbjct: 540 GHWCTTMAYSADGTRLFSCGTSKEGDSHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTR 599
Query: 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660
NRFLAAGDEF +KFWDMDN N+LTT D DGGLPASPRLRFN+EGSLLAVTTSDNGIKILA
Sbjct: 600 NRFLAAGDEFLVKFWDMDNNNILTTTDCDGGLPASPRLRFNREGSLLAVTTSDNGIKILA 659
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
N+DG RLLRMLE RA + +R P + I++KP I ALGP SNVS+ IA ERPDR PAV
Sbjct: 660 NTDGQRLLRMLESRAFEGSRGPPQQINTKP-PIVALGPVSNVSSPIAVNAERPDRILPAV 718
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDS-IAASKVVRLI 779
S S L +D SR DVKPR+ ++ +K+K+W++ DI D ++AL L D+ SK+VRL+
Sbjct: 719 STSGLAPMDASRTPDVKPRITDESEKVKTWKLADIVDNGHLRALHLTDTDTNPSKIVRLL 778
Query: 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839
YTN+G++LLAL SNAVHKLWKWQR++RNPSGK+TA+VAP LWQP +G LMTND N+ P
Sbjct: 779 YTNNGVALLALGSNAVHKLWKWQRSDRNPSGKSTASVAPHLWQPANGILMTNDTNDGNP- 837
Query: 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 899
EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM+PPPAATFLAFHPQDNNIIAI
Sbjct: 838 EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMAPPPAATFLAFHPQDNNIIAI 897
Query: 900 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959
GMEDS++QIYNVR+D+VK+KLKGHQ +ITGLAFS ++N LVSSGADAQLC+WSID WEK
Sbjct: 898 GMEDSTIQIYNVRIDDVKSKLKGHQKKITGLAFSQSMNVLVSSGADAQLCVWSIDGWEKK 957
Query: 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSR 1008
KSR+IQ PA R LVG+T+VQFHNDQTHLLVVHESQ+ +YD L+C R
Sbjct: 958 KSRYIQPPANRPGTLVGDTRVQFHNDQTHLLVVHESQLGIYDGNLDCLR 1006
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242078279|ref|XP_002443908.1| hypothetical protein SORBIDRAFT_07g004180 [Sorghum bicolor] gi|241940258|gb|EES13403.1| hypothetical protein SORBIDRAFT_07g004180 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 1621 bits (4198), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 767/986 (77%), Positives = 863/986 (87%), Gaps = 3/986 (0%)
Query: 27 KLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALD 86
+LEQESGF+FNMKHFED VQ GEWDEVE+YL GFTKVEDNRYSMKIFFEIRKQKYLEALD
Sbjct: 25 RLEQESGFYFNMKHFEDLVQGGEWDEVEKYLSGFTKVEDNRYSMKIFFEIRKQKYLEALD 84
Query: 87 RQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVE 146
R DRAKAVEILVKDLKVF+SFNEELFKEITQLLTL+NFRQNEQLSKYGDTKSARNIML+E
Sbjct: 85 RHDRAKAVEILVKDLKVFASFNEELFKEITQLLTLENFRQNEQLSKYGDTKSARNIMLLE 144
Query: 147 LKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNP 206
LKKLIEANPLFRDKL+FP FK+SRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSC
Sbjct: 145 LKKLIEANPLFRDKLNFPPFKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCAA 204
Query: 207 TSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPFQPVVSPSPGAIAGWMSSNSPSLPHPS 266
+NGAR PPP N PLVG IPK+ FPP+GAH PFQPVVSPSP AIAGWM++ +PSLPH +
Sbjct: 205 PTNGARAPPPANGPLVGSIPKSAGFPPMGAHAPFQPVVSPSPNAIAGWMTNANPSLPHAA 264
Query: 267 MAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHT 326
+A GPPG VQ + FLKHPRTPT G+DYQSADS+HLMKR+R GQ DEVSF+G +H
Sbjct: 265 VAQGPPGLVQAPNTAAFLKHPRTPTSAPGIDYQSADSEHLMKRMRVGQPDEVSFSGASHP 324
Query: 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP 386
N+Y+Q+DL K V RTLNQGSNVMS+DFHP QQTILLVGTNVGDI++WEVGSRER+AHK
Sbjct: 325 ANMYTQEDLPKQVSRTLNQGSNVMSLDFHPVQQTILLVGTNVGDIAVWEVGSRERIAHKT 384
Query: 387 FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH 446
FKVWDI + ++PLQ +L+ DAAISVNRC+W PDG +LGVAFSKHIV YT+ P G+LRQ
Sbjct: 385 FKVWDIGSCTLPLQASLMKDAAISVNRCLWSPDGTILGVAFSKHIVQTYTFVPNGDLRQQ 444
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IKVWD G+KQYTFEGHEAPVYSVCPH
Sbjct: 445 AEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIKVWDAQTGQKQYTFEGHEAPVYSVCPH 504
Query: 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566
+KESIQFIFSTAIDGKIKAWLYD LGSRVDYDAPG+WCT MAYSADGTRLFSCGTSKEG+
Sbjct: 505 YKESIQFIFSTAIDGKIKAWLYDCLGSRVDYDAPGHWCTTMAYSADGTRLFSCGTSKEGD 564
Query: 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 626
SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTRNRFLAAGDEF +KFWDMDN N+LTT
Sbjct: 565 SHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTRNRFLAAGDEFLVKFWDMDNNNILTTT 624
Query: 627 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686
D DGGLPASPRLRFN+EGSLLAVTTSDNGIKILAN+DG RLLRMLE RA + +R P + I
Sbjct: 625 DCDGGLPASPRLRFNREGSLLAVTTSDNGIKILANTDGQRLLRMLESRAFEGSRGPPQQI 684
Query: 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDK 746
++KP I ALGP SNVS+ IA ERPDR PAVS S L +D SR DVKPR+ ++ +K
Sbjct: 685 NTKP-PIVALGPVSNVSSPIAVNAERPDRILPAVSTSGLAPMDPSRTPDVKPRITDESEK 743
Query: 747 IKSWRIPDISDPSQIKALRLPDS-IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTE 805
+K+W++ DI D ++AL L D+ SKVVRL+YTN+G++LLAL SNAVHKLWKWQR +
Sbjct: 744 VKTWKLADIVDNGHLRALHLTDTDTNPSKVVRLLYTNNGIALLALGSNAVHKLWKWQRGD 803
Query: 806 RNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSL 865
RNPSGK+TA+VAP LWQP +G LMTND N+ P EE+ ACIALSKNDSYVMSASGGKVSL
Sbjct: 804 RNPSGKSTASVAPHLWQPANGILMTNDTNDGNP-EEATACIALSKNDSYVMSASGGKVSL 862
Query: 866 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 925
FNMMTFKVMT FM+PPPAATFLAFHPQDNNIIAIGMEDS++QIYNVR+D+VK+KLKGHQ
Sbjct: 863 FNMMTFKVMTTFMAPPPAATFLAFHPQDNNIIAIGMEDSTIQIYNVRIDDVKSKLKGHQK 922
Query: 926 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 985
+ITGLAFS ++N LVSSGADAQLC+WSID WEK KSR+IQ PA R LVG+T+VQFHND
Sbjct: 923 KITGLAFSQSMNVLVSSGADAQLCVWSIDGWEKKKSRYIQPPANRPGTLVGDTRVQFHND 982
Query: 986 QTHLLVVHESQISVYDSKLECSRSVS 1011
QTHLLVVHESQ+++YD LEC RS S
Sbjct: 983 QTHLLVVHESQLAIYDGNLECLRSWS 1008
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168031165|ref|XP_001768092.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680730|gb|EDQ67164.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 1536 bits (3976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 762/1036 (73%), Positives = 856/1036 (82%), Gaps = 34/1036 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FEDQVQ+GEW+EVERYL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDQVQSGEWEEVERYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+QDRAKAV+ILVKDLKVFSSFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKQDRAKAVDILVKDLKVFSSFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FPS K+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARNIMLLELKKLIEANPLFRDKLAFPSLKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DH+C P NGAR PPPTNNPLVG +PK G FPP+ H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHTCGP-PNGARAPPPTNNPLVGGLPKQGAFPPLTTHSPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTG-MDYQ 299
QP PS A+AGWM++ +P PH +A GP P ++ LK PRTP T +DYQ
Sbjct: 240 QPA-PPSASALAGWMANPNPPAPHAPVANGPAALTAPPNSATLLKRPRTPPSTTPTVDYQ 298
Query: 300 SADSDHLMKRIRTG-----QSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 354
SADS+HLMKR R G ++ V+ G +H N S DDL K V R+LNQGS VMSMDF
Sbjct: 299 SADSEHLMKRARPGIQSVDEAKTVNCVGPSHPQNNVSPDDLPKNVARSLNQGSCVMSMDF 358
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414
HP Q +ILLVGTNVGDI +WEVGSR+RLA + FKVWDI+AASMP+Q AL+ D A+SVNR
Sbjct: 359 HPIQLSILLVGTNVGDIGIWEVGSRDRLAQRTFKVWDITAASMPMQAALVKDPAVSVNRT 418
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
VW PDG +LGVAFSKHIVH+Y YN +LRQHLEIDAHVGGVND+AF+HPNKQLC++TCG
Sbjct: 419 VWNPDGTLLGVAFSKHIVHIYAYNGGSDLRQHLEIDAHVGGVNDLAFSHPNKQLCVITCG 478
Query: 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534
DDK IKVWD GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD LGSR
Sbjct: 479 DDKTIKVWDAATGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDLLGSR 538
Query: 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVV 594
VDYDAPG+WCT MAYSADGTRLFSCGTSK+GES+LVEWNESEGAIKRTYSGFRKRS GVV
Sbjct: 539 VDYDAPGHWCTTMAYSADGTRLFSCGTSKDGESYLVEWNESEGAIKRTYSGFRKRSSGVV 598
Query: 595 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654
QFDTTRNRFLAAGDEF IKFWDMDN N+LTT+DA+GGLPASPRLRFNKEGSLLAVT+SDN
Sbjct: 599 QFDTTRNRFLAAGDEFLIKFWDMDNTNLLTTIDAEGGLPASPRLRFNKEGSLLAVTSSDN 658
Query: 655 GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714
GIKILAN DG+++LR LE RA D NR P EP SKP N LG S +RP+
Sbjct: 659 GIKILANRDGMQMLRALEARAYDTNRAPPEPAVSKPPVGNTLGVVSTPGGGGG---DRPN 715
Query: 715 RGPPAVSISSLGTI--------------------DGSRLVDVKPRVAEDV-DKIKSWRIP 753
A S+ T+ +G R + KPR+ +D+ D+ KSW++
Sbjct: 716 SSSMAGSVMDGPTLNMGGSRVRPRDRVGNDHSGMEGGRTPETKPRIPDDIPDRSKSWKLT 775
Query: 754 DISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKAT 813
+I++ +Q + +RLPDS+ +KV RLIYTN+G++LLALASNAVHKLWKWQR ERN SGKAT
Sbjct: 776 EITEQNQCRTIRLPDSLPPNKVARLIYTNAGVALLALASNAVHKLWKWQRNERNVSGKAT 835
Query: 814 ANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKV 873
A+V PQLWQP SG LMTNDI+E+ P E++ CIALSKNDSYVMSASGGKVSLFNMMTFKV
Sbjct: 836 ASVTPQLWQPASGILMTNDISETNP-EDAVPCIALSKNDSYVMSASGGKVSLFNMMTFKV 894
Query: 874 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS 933
MT FM PPPAATFLAFHPQDNNIIAIGMEDS++QIYNVRVDEVK+KLKGHQ RITGLAFS
Sbjct: 895 MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKSKLKGHQKRITGLAFS 954
Query: 934 PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 993
TLN LVSSGADAQLCMW D WEK KS+F+Q G +SP +G+T+VQFHNDQ LLVVH
Sbjct: 955 NTLNVLVSSGADAQLCMWGTDGWEKKKSKFVQVQPGGRSPSIGDTRVQFHNDQVRLLVVH 1014
Query: 994 ESQISVYD-SKLECSR 1008
ESQ++VYD SKL+ R
Sbjct: 1015 ESQLAVYDASKLDRLR 1030
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168060004|ref|XP_001781989.1| predicted protein [Physcomitrella patens subsp. patens] gi|162666562|gb|EDQ53213.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 1516 bits (3925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 748/1007 (74%), Positives = 841/1007 (83%), Gaps = 45/1007 (4%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FEDQVQ GEW+EVERYL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDQVQGGEWEEVERYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+QDRAKAV+ILVKDLKVFSSFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKQDRAKAVDILVKDLKVFSSFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FPS K+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARNIMLLELKKLIEANPLFRDKLAFPSLKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DH+C P NGAR PPP NNPLVG IPK G FP +G H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHTCGP-PNGARAPPPANNPLVGGIPKQGAFP-LGTHSPF 238
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTG-MDYQ 299
QP PS ++AGWM++ +P PH +A GP P ++ LK PRTP T +DYQ
Sbjct: 239 QPA-PPSASSLAGWMANPNPPAPHAPVANGPAALTAPPNSAALLKRPRTPPSTTPTVDYQ 297
Query: 300 SADSDHLMKRIRTG-QS-DEVSF-AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHP 356
SADS+HLMKR R G QS DEV G +H N S DDL K+V R+LNQGS VMSMDFHP
Sbjct: 298 SADSEHLMKRARPGVQSVDEVFVPGGTSHPQNNVSPDDLPKSVARSLNQGSCVMSMDFHP 357
Query: 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416
QQ++LLVGTNVGDI +WEVGSRE+LA + FKVWDI+AASMP+Q AL+ D A+SVNR VW
Sbjct: 358 IQQSVLLVGTNVGDIGIWEVGSREKLAQRTFKVWDITAASMPMQAALVKDPAVSVNRTVW 417
Query: 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476
PDG +LGVAFSKHIVH+Y YN +LRQHLEIDAHVGGVND+AF+HPNKQLC++TCGDD
Sbjct: 418 NPDGTLLGVAFSKHIVHIYAYNGGSDLRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDD 477
Query: 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 536
K IKVWD GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD LGSRVD
Sbjct: 478 KTIKVWDAATGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDLLGSRVD 537
Query: 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596
YDAPG+WCT MAYSADGTRLFSCGTSK+GES+LVEWNESEGAIKRTYSGFRKRS GVVQF
Sbjct: 538 YDAPGHWCTTMAYSADGTRLFSCGTSKDGESYLVEWNESEGAIKRTYSGFRKRSAGVVQF 597
Query: 597 DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656
DTTRNRFLAAGDEF IKFWDMDN N+LTT+DA+GGLPASPRLRFNK+GSLLAVTTSDNGI
Sbjct: 598 DTTRNRFLAAGDEFLIKFWDMDNTNLLTTIDAEGGLPASPRLRFNKDGSLLAVTTSDNGI 657
Query: 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716
KILAN DG+++LR LE RA D NR P EP SK
Sbjct: 658 KILANRDGMQMLRALEARAYDTNRVPPEPAVSK--------------------------- 690
Query: 717 PPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKV 775
++G R + KPR+ +++ D+ KSW++ +I++ +Q + +RLPDS+ +KV
Sbjct: 691 ---------SGMEGGRTPETKPRIPDEIPDRSKSWKLTEITEQNQCRTIRLPDSLPPNKV 741
Query: 776 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE 835
RLIYTN+G++LLALASNAVHKLWKWQR ERN +GKATA+V+PQLWQP SG LMTNDI+E
Sbjct: 742 ARLIYTNAGVALLALASNAVHKLWKWQRNERNINGKATASVSPQLWQPASGILMTNDISE 801
Query: 836 SKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 895
+ P E++ CIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM PPPAATFLAFHPQDNN
Sbjct: 802 TNP-EDAVPCIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMPPPPAATFLAFHPQDNN 860
Query: 896 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955
IIAIGMEDS++QIYNVRVDEVK+KLKGHQ RITGLAFS TLN LVSSGADAQLCMW D
Sbjct: 861 IIAIGMEDSTIQIYNVRVDEVKSKLKGHQKRITGLAFSNTLNVLVSSGADAQLCMWGTDG 920
Query: 956 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002
WEK KS+F+Q G +SP +G+T+VQFHNDQ LLVVHESQ++VY++
Sbjct: 921 WEKRKSKFVQVQPGGRSPSMGDTRVQFHNDQVRLLVVHESQLAVYEA 967
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1058 | ||||||
| TAIR|locus:2036204 | 1131 | TPL "TOPLESS" [Arabidopsis tha | 0.944 | 0.883 | 0.672 | 0.0 | |
| TAIR|locus:2086770 | 1131 | TPR2 "TOPLESS-related 2" [Arab | 0.932 | 0.872 | 0.655 | 0.0 | |
| TAIR|locus:2198888 | 1120 | TPR1 "TOPLESS-related 1" [Arab | 0.658 | 0.622 | 0.706 | 0.0 | |
| TAIR|locus:2040100 | 740 | AT2G25420 "AT2G25420" [Arabido | 0.232 | 0.332 | 0.377 | 2.7e-65 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.499 | 0.387 | 0.240 | 9.5e-22 | |
| DICTYBASE|DDB_G0278353 | 530 | smu1 "suppressor of mec-8 and | 0.149 | 0.298 | 0.294 | 4.6e-18 | |
| FB|FBgn0037094 | 630 | CG7611 [Drosophila melanogaste | 0.182 | 0.306 | 0.266 | 2.7e-12 | |
| ASPGD|ASPL0000038644 | 577 | AN10391 [Emericella nidulans ( | 0.228 | 0.419 | 0.274 | 6e-12 | |
| TAIR|locus:2159562 | 589 | AT5G08560 "AT5G08560" [Arabido | 0.175 | 0.315 | 0.246 | 1.2e-10 | |
| ASPGD|ASPL0000006405 | 1878 | AN6960 [Emericella nidulans (t | 0.239 | 0.134 | 0.263 | 1.3e-10 |
| TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3567 (1260.7 bits), Expect = 0., P = 0.
Identities = 694/1032 (67%), Positives = 809/1032 (78%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+ DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARXXXXXXXXXXXXXXKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DHSC P NGAR KAG FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPP-NGARAPSPVNNPLLGGIPKAGGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QP SP P +AGWMSS S S+PHP+++AG PS LKHPRTP +DY S
Sbjct: 240 QPTASPVPTPLAGWMSSPS-SVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYPS 297
Query: 301 ADSDHLMKRIRT-GQSDEV---------SFAGVAH--TPNVYSQDDLTKTVVRTLNQGSN 348
ADS+H+ KR R G SDEV SF+G AH +P + DDL KTV RTL+QGS+
Sbjct: 298 ADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGSS 357
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDI+F+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C++TCGDDK IKVWD G K++TFEGHEAPVYSVCPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
D +GSRVDYDAPG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +D DGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLA 657
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708
V+ ++N IKI+ANSDG+RLL E + SE SSKP IN++ A+ AA A
Sbjct: 658 VSGNENVIKIMANSDGLRLLHTFENIS-------SE--SSKP-AINSIAAAA---AAAAT 704
Query: 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLP 767
+ DR VSI + D +VDVKP + E+ DK K W++ ++S+PSQ ++LRLP
Sbjct: 705 SAGHADRSANVVSIQGMNG-DSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLP 763
Query: 768 DSIAASKVVRLIYTXXXXXXXXXXXXXVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 827
+++ +K+ RLI+T +H LWKWQR ERN +GKATA++ PQ WQP SG
Sbjct: 764 ENLRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGI 823
Query: 828 LMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFL 887
LMTND+ E+ P EE+ C ALSKNDSYVMSASGGK+SLFNMMTFK M FM PPPAATFL
Sbjct: 824 LMTNDVAETNP-EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 882
Query: 888 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947
AFHPQDNNIIAIGM+DS++QIYNVRVDEVK+KLKGH RITGLAFS LN LVSSGADAQ
Sbjct: 883 AFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ 942
Query: 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLEC 1006
LC+W+ D WEK +S+ + P GR + +T+VQFH DQ H LVVHE+Q+++Y++ KLEC
Sbjct: 943 LCVWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLEC 1002
Query: 1007 SRSVSFL-SLCP 1017
+ + SL P
Sbjct: 1003 MKQWAVRESLAP 1014
|
|
| TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3388 (1197.7 bits), Expect = 0., P = 0.
Identities = 665/1015 (65%), Positives = 797/1015 (78%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKE+VHKLEQESGFFFN+K+FE++ AGEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DRAKAVEIL KDLKVF++FNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR+IM ELKKLIEANPLFR+KL+FPSFK+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARXXXXXXXXXXXXXXKAGQFPPIGAHG-P 239
WQHQLCKNPRPNPDIKTLF DHSC+P SNGAR + F P+G HG P
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSP-SNGARALTPVNLPVAAVA-RPSNFVPLGVHGGP 238
Query: 240 FQ--PVVSPSPGAIAGWMSSNSPSLPHPS-MAAGPPGFVQPSSAVGFLKHPRTPTGMTG- 295
FQ P +P+ A+AGWM++ +PS PS + A P +QPS V LKHPR P+ G
Sbjct: 239 FQSNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQ-VNELKHPRAPSNSLGL 297
Query: 296 MDYQSADSDHLMKRIRTGQ-SDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 354
MDYQSAD + LMKR+R+ Q S+EV++ +H P S DDL + VV T+ QGS V+SMDF
Sbjct: 298 MDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPPA--SLDDLPRNVVSTIRQGSVVISMDF 355
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414
HP T+L VG + G+++LWEVGSRE++ +PFK+W+++A S+ Q +++ + +ISV R
Sbjct: 356 HPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRV 415
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
W PDG +LGV+F+KH++H+Y Y + +LRQHLEIDAHVG VND+AFAHPNKQ+C+VTCG
Sbjct: 416 AWSPDGNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCG 474
Query: 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534
DDK+IKVWD+ +G+K +TFEGHEAPVYS+CPH KE+IQFIFSTA+DGKIKAWLYD +GSR
Sbjct: 475 DDKLIKVWDL-SGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSR 533
Query: 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVV 594
VDYDAPG WCT M YSADG+RLFSCGTSKEG+S LVEWNESEGA+KRTY GFRK+S GVV
Sbjct: 534 VDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVV 593
Query: 595 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654
QFDTTRNRFLA G++ QIKFW+MDN N+LT V+A+GGLP PRLRFNK+G+LLAVTT+DN
Sbjct: 594 QFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADN 653
Query: 655 GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714
G KILAN+DG+R LR E R+ + ++ +S + ++ AS++S AI +E D
Sbjct: 654 GFKILANTDGLRTLRAFEARSFEASK------ASIDMKVSTSAMASSISPAIGK-IEHMD 706
Query: 715 RGPPAVSISSLGTIDG-SRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI-AA 772
G PA I+ SR ++ KPR + VDK K + +I DP+Q + + +PDS +
Sbjct: 707 AGSPARPTPIPNGIEAMSRTME-KPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKDSV 765
Query: 773 SKVVRLIYTXXXXXXXXXXXXXVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND 832
SKV RL+YT V +LWKW R E+NP+GKATA+V PQ WQP SG LM ND
Sbjct: 766 SKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMAND 825
Query: 833 INESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 892
+ E+ P E S CIALSKNDSYVMSA GGKVSLFNMMTFKVMT FM PPPA+TFLAFHPQ
Sbjct: 826 VPEN-P-EGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQ 883
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
DNNIIAIGMEDSS+ IYNVRVDEVKTKLKGHQ ITGLAFS LN LVSSGADAQL W+
Sbjct: 884 DNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWT 943
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLEC 1006
D WEK KS IQ P G+ +P VG+T+VQFHNDQ LLV HE+Q+++YD SK+EC
Sbjct: 944 ADSWEKKKSSAIQLPPGK-AP-VGDTRVQFHNDQIQLLVSHETQLAIYDASKMEC 996
|
|
| TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2622 (928.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 505/715 (70%), Positives = 577/715 (80%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARXXXXXXXXXXXXXXKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DHSC N AR KA FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCR-LPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QP SP P +AGWMSS S S+PHP+++ GP PS LKHPRTP + +DY S
Sbjct: 240 QPTPSPVPTPLAGWMSSPS-SVPHPAVSGGPIALGAPSIQAA-LKHPRTPPSNSAVDYPS 297
Query: 301 ADSDHLMKRIRT-GQSDEVS---------FAGVAHTPN--VYSQDDLTKTVVRTLNQGSN 348
DSDH+ KR R G SDEVS F G AH N + DDL KTV RTL+QGS+
Sbjct: 298 GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSS 357
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDIAF+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C+ TCGDDK IKVWD G K+YTFEGHEAPVYS+CPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
D +GSRVDY+APG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +DADGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNR--CPSEPISSKPLTINALGPASN 701
V+ +DN IK++ANSDG+RLL +E + + ++ S P+ +P ++ ++ P N
Sbjct: 658 VSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVERPASVVSI-PGMN 711
|
|
| TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 426 (155.0 bits), Expect = 2.7e-65, Sum P(2) = 2.7e-65
Identities = 97/257 (37%), Positives = 141/257 (54%)
Query: 754 DISDPSQIKALRLPDSIAASKVVRLIYTXXXXXXXXXXXXXVHKLWKWQRTERNPSGKAT 813
+I DPSQ AL LPD + K+ RL Y+ HKLW W ++ N K
Sbjct: 371 EIKDPSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQ-NEFCKEN 429
Query: 814 ANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKV 873
P+L QP SG M N++ S ++S +C A+ SY+ S SGGK+++F++ F+
Sbjct: 430 VYPKPRLHQPQSGKTMENEMATS--VQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNFEK 485
Query: 874 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS 933
+ F SP P AT+ F P D ++A+G++D S+ I+ + +VK KL+GH +IT LAFS
Sbjct: 486 VASFGSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLAFS 543
Query: 934 PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE---TKVQFHNDQTHLL 990
N LVSS +D +LC+WS W KL S+ +S L T +QF Q LL
Sbjct: 544 RCFNVLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIELL 603
Query: 991 VVHESQISVYDSK-LEC 1006
VVH+ I +Y+ + L+C
Sbjct: 604 VVHDGWIGLYEVRTLDC 620
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 294 (108.6 bits), Expect = 9.5e-22, P = 9.5e-22
Identities = 139/577 (24%), Positives = 241/577 (41%)
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
K+WD + + LQ L+ + +V + PDG +L + + L+ + TGEL Q
Sbjct: 775 KIWDPATGEL-LQT--LDGHSGTVESLAFSPDGKLLASGSYDNTIDLWD-SATGELLQTF 830
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507
E H + +AFA K+L + DD IK+WD+ G Q T + H V SV
Sbjct: 831 E--GHPHSIWSVAFAPDGKELA--SASDDSTIKIWDLATGELQQTLDSHSQSVRSVA--F 884
Query: 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567
+ + S+++D IK W + + W +A+S DG +L S G+ K +
Sbjct: 885 SPDGKLLASSSLDSTIKVWNPATGELQQSLEGRSGWVKSVAFSPDGKKLAS-GSEK---N 940
Query: 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627
+ WN + G + +T G +S+ V F + ++ + IK W+ + T
Sbjct: 941 TVKLWNPATGELLQTLEG-HSQSVRSVAFSPDGKQLASSSSDTTIKLWNSTTGELQQTFK 999
Query: 628 A-DGGLPASPRLRFNKEGSLLAVTTSDNGIKI--LANSDGVRLLRMLEGRAMDKNRCPSE 684
D + A + F+ +G L + DN IK+ LA S+ L + LE + +
Sbjct: 1000 GHDLWIRA---VAFSPDGKHLVSGSDDNTIKLWDLATSE---LQQSLEDHSRSVHAVAFS 1053
Query: 685 PISSKPLTINALGPA----SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 740
P K L ++L + + + TLE +G +V+ S G + S D ++
Sbjct: 1054 P-DDKQLASSSLDSTIKLWDSATGELQRTLEGHSQGVRSVTFSPDGKLLASNSYDGTIKL 1112
Query: 741 AEDVDKIKSWRIPDISDPSQIKALRLPDS--IAASKVVRLIYTXXXXXXXXXXXXXVHKL 798
+ + SD A PD +A+ I H
Sbjct: 1113 WNPLTGELQQTLTGRSDWVDSVAFS-PDGKQLASGYYDSTIKLWDSATGELLQTLEGHSD 1171
Query: 799 WKWQRTERNPSGKATANVA----PQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 854
+ Q +P GK A+ + +LW P +G L+ SK E +A S +
Sbjct: 1172 -RIQSVVFSPDGKLLASGSYDQTAKLWDPATGELLQIFEGHSKWVES----VAFSPDGKL 1226
Query: 855 VMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913
+ S+S G+ + L++ +T +++ P +A +AF P N + ++ + D+ +I++
Sbjct: 1227 LASSSYGETIKLWDPVTGELLQTLNDPDESAGSVAFSPDGNRLASVDIFDT--KIWDPAT 1284
Query: 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCM 950
E+ LKGH + +S T A +S D LC+
Sbjct: 1285 GELLQALKGHSKWV----WSRT-GAGISIFLDQWLCL 1316
|
|
| DICTYBASE|DDB_G0278353 smu1 "suppressor of mec-8 and unc-52-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 4.6e-18, Sum P(3) = 4.6e-18
Identities = 56/190 (29%), Positives = 88/190 (46%)
Query: 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFNM----KHFEDQVQAGEWDEVERYLCGF 60
S++++ LILQFL E ++ L++E+G N + F + V+ G WD V
Sbjct: 16 SQDVIKLILQFLKENSLGNSLTALQEETGINLNAVDSKETFLNDVKNGNWDSV------L 69
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
T V R S + ++ +Q +E L K E+ ++ N + + L
Sbjct: 70 TVVSTLRLSTTLLMDLYEQ-IVELL----HLKEYELCKYLIRKTEPLNYMKLNQQERYLK 124
Query: 121 LDNFRQNEQLS-----KYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLI 175
L+N Q E + KYG T R K+LIE L + ++ PS SRL +L+
Sbjct: 125 LENHLQREYIDLGDFYKYGITTEKRR------KQLIEQ--LNNEIITVPS---SRLLSLL 173
Query: 176 NQSLNWQ-HQ 184
+QSL+WQ HQ
Sbjct: 174 SQSLHWQKHQ 183
|
|
| FB|FBgn0037094 CG7611 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 58/218 (26%), Positives = 99/218 (45%)
Query: 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFF---NMKHFEDQVQAGEWDEVERYLCGFT 61
++E++ LI Q+L + ++V L ESG + + F + V G+W + + L
Sbjct: 97 NQEIIRLIGQYLHDVGLDKSVQTLMLESGCYLEHPSATKFREHVLMGDWSKADSDLKDLE 156
Query: 62 KVEDNRYSMKIF---FEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQL 118
+ DN I F + +QKYLE LD + A+ +L +L N +++
Sbjct: 157 PLIDNGKLATITEMKFILLEQKYLEHLDDGNPLDALHVLRSELTPLQH-NITRVHQLSSY 215
Query: 119 LTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSS--RLRTLIN 176
+ + Q +K+ + K + LV +++L P PS S RLRTL+
Sbjct: 216 MMCSTNQDLYQRAKW-EGKGILSRALV-MERLQTFMP--------PSVMMSPRRLRTLLQ 265
Query: 177 QS--LNWQHQLCKNPRPNPDIKT--LFTDHSCNPTSNG 210
Q+ L QH C + +++T L TDH C T++G
Sbjct: 266 QAVELQSQHCPCHDMAWETNLETVSLLTDHCC--TTDG 301
|
|
| ASPGD|ASPL0000038644 AN10391 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 73/266 (27%), Positives = 121/266 (45%)
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
K+WD S LQ+ L + + V ++ D +L A S V ++ TG L QH
Sbjct: 321 KIWDTETGS--LQHTLEGHSDL-VRSVIFSHDSRLLASA-SDSTVKIWDTG-TGSL-QHT 374
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507
++ H V + F+H + QL + + DD +K+WD G Q+T EGH V SV H
Sbjct: 375 -LEGHRDWVRSVIFSH-DSQL-LASASDDSTVKIWDTGTGSLQHTLEGHRDWVRSVIFSH 431
Query: 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEG 565
Q + S + D +K W D + + G+ W + +S D +RL + S
Sbjct: 432 DS--QLLASASDDSTVKIW--DTGTGSLQHTLEGHRDWVRSVIFSHD-SRLLA---SASD 483
Query: 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625
+ + W+ +G+ K T G + V F +A ++ ++ WD++ ++ T
Sbjct: 484 DRTVRIWDTEKGSHKHTLEG-HSSLVTSVSFSHDSRLLASASNDQTVRIWDIEARSLQHT 542
Query: 626 VDADGGLPASPRLRFNKEGSL-LAVT 650
D D + A +RF+K SL + VT
Sbjct: 543 FDLDATIEA---MRFDKATSLWIQVT 565
|
|
| TAIR|locus:2159562 AT5G08560 "AT5G08560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 125 (49.1 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 50/203 (24%), Positives = 94/203 (46%)
Query: 7 ELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKHFEDQVQAGEWDEVERYL--CGFT 61
E V +I + L + +T LE+ESG + +K F QV+ G+WD+ + L GF
Sbjct: 67 EFVRIITRALYSLGYDKTGAMLEEESGISLHNSTIKLFLQQVKDGKWDQSVKTLHRIGFP 126
Query: 62 KVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTL 121
D + F + +QK+LE L + A A+ L ++ + + + + L++
Sbjct: 127 ---DEKAVKAASFLLLEQKFLEFLKVEKIADALRTLRNEMAPLRINTKRVHELASSLISP 183
Query: 122 DNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNW 181
+F + + ++ ++R+ +L EL+ L+ A+ + +K RL L+ SL+
Sbjct: 184 SSFISHTTSTPGKESVNSRSKVLEELQTLLPASVIIPEK---------RLECLVENSLHI 234
Query: 182 QHQLCKNPRPNPDIKTLFTDHSC 204
Q C +L++DH C
Sbjct: 235 QRDSCVFHNTLDSDLSLYSDHQC 257
|
|
| ASPGD|ASPL0000006405 AN6960 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 209 (78.6 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 73/277 (26%), Positives = 128/277 (46%)
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
K+WD S LQN +L VN + PD +L A V ++ + TG L++ L
Sbjct: 414 KIWDTRTGS--LQN-VLEGHDDCVNSVSFSPDSRLLASASDDRTVKIW-HAATGSLQRTL 469
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507
E H V + F+H ++ I + DD +K+WD Q E H+ V SV H
Sbjct: 470 E--GHNDWVRSVVFSHDSR--LIASASDDMTVKIWDTATVPLQNNLESHDNWVRSVVFSH 525
Query: 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEG 565
+ + S + D +K W D ++ G+ +++S D +RL + S +G
Sbjct: 526 DSRL--LASASDDMTVKIW--DTATGSLENTLEGHDDRVNSVSFSPD-SRLLA-SASDDG 579
Query: 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625
+ W + G ++ T+ G + ++ + F T N +A D+ +K WDM+ ++ T
Sbjct: 580 TVKI--WYAATGTVQHTFDGSGRVAISLA-FSHTSNLLASAMDDGTVKIWDMEIYSLRHT 636
Query: 626 VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662
D D + R++F+K S+ ++ T+ I++ A S
Sbjct: 637 FDLDHEIQ---RIQFDK--SMSSLITNVGRIQLDARS 668
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94AI7 | TPL_ARATH | No assigned EC number | 0.6761 | 0.9640 | 0.9018 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1058 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-22 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-22 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-20 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-17 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-13 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-13 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-13 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-13 | |
| smart00668 | 58 | smart00668, CTLH, C-terminal to LisH motif | 7e-12 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-11 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-07 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 5e-06 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 4e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 7e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.003 | |
| pfam10607 | 144 | pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 2e-22
Identities = 61/231 (26%), Positives = 88/231 (38%), Gaps = 32/231 (13%)
Query: 336 TKTVVRTLNQ-GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISA 394
T VRTL S V S+ F P + IL + I +W+V + + L
Sbjct: 82 TGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCL------------ 128
Query: 395 ASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG 454
L VN + PDG + + + L+ TG+ + H G
Sbjct: 129 -------TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR-TGKCVA--TLTGHTG 178
Query: 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514
VN +AF+ ++L + D IK+WD+ G+ T GHE V SV +
Sbjct: 179 EVNSVAFSPDGEKLL--SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG--YLL 234
Query: 515 FSTAIDGKIKAWLYDYLGSRVDYDAPG--NWCTMMAYSADGTRLFSCGTSK 563
S + DG I+ W D G N T +A+S DG RL S
Sbjct: 235 ASGSEDGTIRVW--DLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 6e-22
Identities = 64/294 (21%), Positives = 104/294 (35%), Gaps = 42/294 (14%)
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA----HKPFKVWDISAASMPLQNALL 404
V + F P + + + G I +W++ + E L H V D++A L
Sbjct: 12 VTCVAFSPDGKLLATGSGD-GTIKVWDLETGELLRTLKGHT-GPVRDVAA--SADGTYLA 67
Query: 405 ---NDAAISV-----NRCVW---GPDGLMLGVAFSKHI-----------VHLYTYNPTGE 442
+D I + CV G + VAFS + ++ TG+
Sbjct: 68 SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD-VETGK 126
Query: 443 LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502
+ H VN +AF P+ + + D IK+WD+ G+ T GH V S
Sbjct: 127 CLT--TLRGHTDWVNSVAF-SPDGTF-VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182
Query: 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562
V + S++ DG IK W N +A+S DG L S
Sbjct: 183 VAFSPDGE--KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS-- 238
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616
+ + W+ G +T SG + + + R + + I+ WD
Sbjct: 239 --EDGTIRVWDLRTGECVQTLSGHTNS-VTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 6e-20
Identities = 68/266 (25%), Positives = 109/266 (40%), Gaps = 19/266 (7%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
V + PDG +L + ++ TGEL + L+ H G V D+A + L
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLE-TGELLRTLK--GHTGPVRDVAASADGTYL- 66
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
+ DK I++WD+ G T GH + V SV I + S++ D IK W +
Sbjct: 67 -ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI--LSSSSRDKTIKVWDVE 123
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK- 588
+W +A+S DGT + S S++G L W+ G T +G
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASS--SQDGTIKL--WDLRTGKCVATLTGHTGE 179
Query: 589 -RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647
S V F + L++ + IK WD+ L T+ S + F+ +G LL
Sbjct: 180 VNS---VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS--VAFSPDGYLL 234
Query: 648 AVTTSDNGIKILANSDGVRLLRMLEG 673
A + D I++ + ++ L G
Sbjct: 235 ASGSEDGTIRVW-DLRTGECVQTLSG 259
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.1 bits (209), Expect = 4e-17
Identities = 71/310 (22%), Positives = 126/310 (40%), Gaps = 27/310 (8%)
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
+ S+ F P + +LL G++ G I LW++ + E+L +L
Sbjct: 68 ITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIK-----------------SLEGLHD 109
Query: 409 ISVNRCVWG-PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ 467
SV++ PDG + +A S + ++ + + ++ H V +AF P+ +
Sbjct: 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAF-SPDGK 168
Query: 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527
L D IK+WD+ G+ T GH PV S+ + I S + DG I+ W
Sbjct: 169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL-LIASGSSDGTIRLWD 227
Query: 528 YDYLGSRVDYDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586
G + G+ + ++S DG+ L S S +G L W+ +
Sbjct: 228 LST-GKLLRSTLSGHSDSVVSSFSPDGSLLASG--SSDGTIRL--WDLRSSSSLLRTLSG 282
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646
S+ V F + + ++ WD++ +L+++ G L F+ +GSL
Sbjct: 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSL 342
Query: 647 LAVTTSDNGI 656
L SD+G
Sbjct: 343 LVSGGSDDGT 352
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.7 bits (182), Expect = 1e-13
Identities = 65/339 (19%), Positives = 123/339 (36%), Gaps = 43/339 (12%)
Query: 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA---- 383
++ K + +V S+ F P + + + G I LW++ + + L+
Sbjct: 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196
Query: 384 HKPF-----------------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
H ++WD+S L++ L + V+ + PDG
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRSTLSGHSDSVVS--SFSPDG 253
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
+L S + L+ + L + L H V +AF P+ +L + D ++
Sbjct: 254 SLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSVLSVAF-SPDGKLLA-SGSSDGTVR 309
Query: 481 VWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538
+WD+ G+ T +GHE PV S+ + + + DG I+ W +
Sbjct: 310 LWDLETGKLLSSLTLKGHEGPVSSLS-FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368
Query: 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598
+ +++S DG + S T + W+ S G++ R G R + F
Sbjct: 369 G-HSNVLSVSFSPDGRVVSSGSTDGT----VRLWDLSTGSLLRNLDGHTSRVT-SLDFSP 422
Query: 599 TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637
+ + I+ WD+ + DG + AS
Sbjct: 423 DGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKS 461
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.7 bits (182), Expect = 1e-13
Identities = 63/276 (22%), Positives = 108/276 (39%), Gaps = 34/276 (12%)
Query: 315 SDEVSFAGVAHTPNVYSQDDLTKTVVRTL-NQGSNVMSMDFHPQQQTILLVGTNVGDISL 373
++ +G + + D T + TL V S+ F P ++ G++ G I L
Sbjct: 166 DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225
Query: 374 WEVGSRERLAH--------------------------KPFKVWDISAASMPLQNALLNDA 407
W++ + + L ++WD+ ++S L+ + +
Sbjct: 226 WDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285
Query: 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ 467
SV + PDG +L S V L+ TG+L L + H G V+ ++F P+
Sbjct: 286 --SVLSVAFSPDGKLLASGSSDGTVRLWDLE-TGKLLSSLTLKGHEGPVSSLSF-SPDGS 341
Query: 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527
L + DD I++WD+ G+ T EGH V SV + ST DG ++ W
Sbjct: 342 LLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGST--DGTVRLWD 398
Query: 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563
+ D + T + +S DG L S +
Sbjct: 399 LSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDN 434
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 3e-13
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 845 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED 903
+A S + ++S+S G + L+++ T K + +AF P D ++A G ED
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSED 240
Query: 904 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
+++++++R E L GH N +T LA+SP L S AD + +W
Sbjct: 241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 8e-13
Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 845 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED 903
+A S + + S+S + ++++ T K +T +AF P D +A +D
Sbjct: 98 SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQD 156
Query: 904 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961
+++++++R + L GH + +AFSP L+SS +D + +W + + L +
Sbjct: 157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT 214
|
Length = 289 |
| >gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 7e-12
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 34 FFFNMKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAK 92
F K + + G+WDE +L R S K+ FE+RKQK+LE + + +
Sbjct: 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58
|
Alpha-helical motif of unknown function. Length = 58 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 845 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED 903
+A S + ++V S+S G + L+++ T K + +AF P D + D
Sbjct: 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSD 198
Query: 904 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961
+++++++ + L+GH+N + +AFSP L S D + +W + E +++
Sbjct: 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQT 256
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 8e-11
Identities = 29/161 (18%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 845 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED 903
C+A S + + + SG G + ++++ T +++ +A + + D
Sbjct: 14 CVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS-D 72
Query: 904 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF 963
+++++++ E L GH + ++ +AFSP L SS D + +W ++ +
Sbjct: 73 KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-----TGKC 127
Query: 964 IQAPAGRQSPLVGETKVQFHNDQTHLLVVH-ESQISVYDSK 1003
+ G + V F D T + + I ++D +
Sbjct: 128 LTTLRGHTDWV---NSVAFSPDGTFVASSSQDGTIKLWDLR 165
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.9 bits (146), Expect = 2e-09
Identities = 35/176 (19%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG--GKVSLFNMMTFKVMTM 876
+LW +G ++ + P +A S + ++++ G + L+++ T K++
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVS----SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS 236
Query: 877 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPT 935
+S + +F P D +++A G D +++++++R + L GH + + +AFSP
Sbjct: 237 TLSGHSDSVVSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD 295
Query: 936 LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991
L S +D + +W ++ + L S ++ G + + F D + L+
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP------VSSLSFSPDGSLLVS 345
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.3 bits (134), Expect = 6e-08
Identities = 87/396 (21%), Positives = 156/396 (39%), Gaps = 51/396 (12%)
Query: 594 VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKEGSLLAVTTS 652
+ F L+ + IK WD+DN L +++ S + +G+ + + +S
Sbjct: 71 IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS 130
Query: 653 --DNGIKILANSDGVRLLRMLEG--------------------RAMDKNRCPSEPISSKP 690
D +K+ S +L+R LEG ++D + + KP
Sbjct: 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP 190
Query: 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI------DGSRLVDVKPRVAEDV 744
L+ A S A +P D G S SS GTI G L ++ V
Sbjct: 191 LSTLAGHTDPVSSLAFSP-----DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245
Query: 745 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT 804
S ++ S +RL D ++S ++R + +S S+L++A + KL
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS-SVLSVAFSPDGKLL----- 299
Query: 805 ERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG--GK 862
SG + V LW T K E + ++ S + S ++S G
Sbjct: 300 ---ASGSSDGTVR--LWD--LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT 352
Query: 863 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 922
+ L+++ T K + ++F P D +++ G D +V+++++ + L G
Sbjct: 353 IRLWDLRTGKPLKTLEGHSNV-LSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDG 410
Query: 923 HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 958
H +R+T L FSP +L S +D + +W + K
Sbjct: 411 HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLK 446
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 16/185 (8%)
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW---LYDYLGSRVDYDAPGNWCTMMA 548
T +GH V V + + + + DG IK W + L + + P A
Sbjct: 4 TLKGHTGGVTCVAFS--PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDV---A 58
Query: 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608
SADGT L S + K + W+ G RT +G V F ++
Sbjct: 59 ASADGTYLASGSSDKT----IRLWDLETGECVRTLTGHTSYVSS-VAFSPDGRILSSSSR 113
Query: 609 EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 668
+ IK WD++ LTT+ S + F+ +G+ +A ++ D IK+ + + +
Sbjct: 114 DKTIKVWDVETGKCLTTLRGHTDWVNS--VAFSPDGTFVASSSQDGTIKL-WDLRTGKCV 170
Query: 669 RMLEG 673
L G
Sbjct: 171 ATLTG 175
|
Length = 289 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 5e-06
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 4 LSRELVFLILQFLDEEKFKETVHKLEQESGF 34
EL LIL++L ++ET L++ESG
Sbjct: 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 20/117 (17%)
Query: 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETK 979
LKGH +T +AFSP L + D + +W ++ E L++ G P+
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-----KGHTGPV---RD 56
Query: 980 VQFHNDQTHLLVVHE-SQISVYD-SKLECSR----------SVSFLSLCPYVFGVSS 1024
V D T+L I ++D EC R SV+F + S
Sbjct: 57 VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSR 113
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-05
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 915 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
E+ LKGH +T +AFSP L S D + +W
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483
+ H G V +AF P+ L + + DD ++VWD
Sbjct: 6 TLKGHTGPVTSVAF-SPDGNL-LASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 6e-05
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 915 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
++ LKGH +T +AFSP N L S D + +W
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 7e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483
+ H G V +AF P+ + + + DD IK+WD
Sbjct: 7 TLKGHTGPVTSVAF-SPDGKY-LASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.2 bits (100), Expect = 7e-04
Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 845 CIALSKNDSYVMSASG-GKVSLFNMMT--FKVMTMFMSPPPAATFLAFHPQDNNIIAIGM 901
+A S + + S S G V L+++ T + L+F P + +++ G
Sbjct: 289 SVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS 348
Query: 902 EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961
+D +++++++R + L+GH N + ++FSP + S D + +W + L++
Sbjct: 349 DDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRN 407
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 0.003
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
G+ T +GH PV SV + S + DG ++ W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDG--NLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.003
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 71 KIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQL 130
+ FE+R Q+++E + +A+E ++L F FNE+ KEI +L+ L F
Sbjct: 37 NLEFELRLQQFIELIREGKILEALEYARENLAPF--FNEQHLKEIQKLMGLLAFPDPTDS 94
Query: 131 SKYGD 135
S Y
Sbjct: 95 SPYKS 99
|
RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1058 | |||
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.98 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.98 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.93 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.92 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.92 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.91 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.91 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.9 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.9 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.9 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.88 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.87 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.87 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.87 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.87 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.86 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.86 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.86 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.85 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.85 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.85 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.84 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.84 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.83 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.83 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.83 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.83 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.82 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.82 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.82 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.82 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.81 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.81 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.8 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.79 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.77 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.76 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.76 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.76 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.75 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.74 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.74 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.74 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.74 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.72 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.72 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.72 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.72 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.72 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.7 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.7 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.69 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.69 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.68 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.68 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.68 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.65 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.64 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.63 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.63 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.62 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.62 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.62 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.61 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.61 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.61 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.6 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.6 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.58 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.57 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.56 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.55 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.54 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.54 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.53 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.53 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.53 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.52 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.52 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.52 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.52 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.52 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.52 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.49 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.47 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.46 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.45 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.45 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.45 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.45 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.44 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.44 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.43 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.42 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.41 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.4 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.4 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.4 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.4 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.38 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.37 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.36 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.35 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.35 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.34 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.34 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.34 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.33 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.31 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.3 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.3 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.27 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.26 | |
| KOG2659 | 228 | consensus LisH motif-containing protein [Cytoskele | 99.22 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.22 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.2 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.2 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.18 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.14 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.12 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.11 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.1 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.05 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.04 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.96 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.94 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.93 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.91 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.91 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.9 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.87 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.86 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.85 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.84 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.84 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.82 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.82 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.82 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.77 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.76 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.76 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.75 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.73 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.71 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.7 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.69 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.69 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.67 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.67 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.66 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.64 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.62 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.62 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.6 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.6 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.56 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.55 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.54 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.52 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.52 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 98.47 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.46 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.43 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.43 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.42 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.41 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.37 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.36 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.32 | |
| PF10607 | 145 | CLTH: CTLH/CRA C-terminal to LisH motif domain; In | 98.32 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.32 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.26 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.26 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.26 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.24 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.24 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.15 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.15 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.13 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.08 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.03 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.02 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.01 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.99 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.99 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.98 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.97 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.97 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.97 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.96 | |
| smart00668 | 58 | CTLH C-terminal to LisH motif. Alpha-helical motif | 97.96 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.95 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.94 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.93 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.9 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.89 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.87 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.81 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.79 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.78 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.78 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.74 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.69 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.67 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.59 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.57 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.53 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.53 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.51 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.5 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.48 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.46 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.46 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.44 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.37 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.32 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.31 | |
| cd08044 | 133 | TAF5_NTD2 TAF5_NTD2 is the second conserved N-term | 97.25 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.23 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.21 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.16 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.16 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.12 | |
| PF04494 | 142 | TFIID_90kDa: WD40 associated region in TFIID subun | 97.11 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.1 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.97 | |
| PRK10115 | 686 | protease 2; Provisional | 96.97 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.92 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.91 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.88 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.74 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.68 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.67 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.67 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.64 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.58 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.57 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.57 | |
| PRK10115 | 686 | protease 2; Provisional | 96.51 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.47 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.4 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.29 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.26 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.23 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.21 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.2 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.13 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.13 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.12 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.1 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.06 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.05 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.04 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.9 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.74 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.69 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.65 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.61 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.59 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.55 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.37 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.37 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.28 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 95.24 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.22 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.09 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 94.91 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.86 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 94.58 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.23 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 94.18 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.08 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 94.02 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 93.96 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.78 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 93.52 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 93.43 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.24 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.17 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 93.14 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 92.67 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 92.45 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 92.08 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 92.07 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.85 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 91.8 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 91.7 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 91.64 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 91.62 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.49 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.35 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 91.29 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 90.78 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 90.02 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 89.92 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 89.87 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 89.57 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 89.33 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 89.17 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 88.96 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 88.05 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 88.01 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 88.01 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 87.97 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 87.53 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 87.22 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 87.08 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 87.08 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 86.37 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 86.07 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 85.48 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 85.38 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 85.34 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 85.29 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 85.02 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 84.87 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 84.72 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 84.66 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 84.33 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 84.11 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 84.08 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 83.95 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 83.7 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 83.49 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 82.97 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 82.89 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 82.72 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 81.83 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 81.46 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 81.09 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 80.98 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 80.58 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 80.39 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 80.3 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 80.3 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 80.26 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 80.24 |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-67 Score=511.91 Aligned_cols=491 Identities=20% Similarity=0.308 Sum_probs=397.3
Q ss_pred hHHHHHHHHHHhhhcCHHHHHHHHHHHhCCCcc---HHHHHHHHhcCCHHHHHHHhcCCCccccccchhhHHHHHHHHHH
Q 001534 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKY 81 (1058)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1058)
+-|++||+.|+|..+||.+|+.+||.|||+.+. .+.|.+.++.|+|+.++..+..+ ..++++..+++.|++++|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i-~~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRI-SFEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhc-cCcchhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999886 89999999999999999988766 34445566789999999999
Q ss_pred HHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccccchhccCCCchhHHHHHHHHHHhhcccCccccccC
Q 001534 82 LEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKL 161 (1058)
Q Consensus 82 lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~ 161 (1058)
||++-.|....|+.+||+...++ -++.+++++|+.-+..++-....+...-......|..|+++|+++|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~il----- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNIL----- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhc-----
Confidence 99999999999999999999988 468899999988776654332222111122467799999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhhCCCCCCCCCcccccccCccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 001534 162 SFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPFQ 241 (1058)
Q Consensus 162 ~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 241 (1058)
+|++||+.||+||++||+.+|+|||. .+..|||.||.|.+ .++ |. .+.+++..|+
T Consensus 170 ----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~------------~qi----p~-qt~qil~~ht--- 224 (519)
T KOG0293|consen 170 ----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGR------------LQI----PS-QTWQILQDHT--- 224 (519)
T ss_pred ----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCc------------ccC----Cc-hhhhhHhhCC---
Confidence 99999999999999999999999996 55589999999999 222 21 2233344444
Q ss_pred CCCCCCCccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCCchhhhhhcccCCcceeeec
Q 001534 242 PVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFA 321 (1058)
Q Consensus 242 ~~~~~~~fs~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1058)
T Consensus 225 -------------------------------------------------------------------------------- 224 (519)
T KOG0293|consen 225 -------------------------------------------------------------------------------- 224 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcceecCCccccceeEeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeeccccccccccc
Q 001534 322 GVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQN 401 (1058)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1058)
++|+-+.||++|+ +||+++.|.+..||++.....+. + .
T Consensus 225 -------------------------dEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~k-----l-----------~ 262 (519)
T KOG0293|consen 225 -------------------------DEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFK-----L-----------K 262 (519)
T ss_pred -------------------------CcEEEEEEcCCCe-eEeeccCCceEEEEEEecCccee-----e-----------e
Confidence 4555555666665 45666666666677665433211 0 1
Q ss_pred ccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEE
Q 001534 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1058)
Q Consensus 402 ~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~v 481 (1058)
..+.+|..+|..+.||||.++|++++.|..+.+||+.+|....... .+|...+.+++|.|||. .+++|+.|+++..
T Consensus 263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~ 338 (519)
T KOG0293|consen 263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIM 338 (519)
T ss_pred eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEE
Confidence 1267899999999999999999999999999999999998765332 24567899999999999 7999999999999
Q ss_pred EEcCCCceeEEeeCC-CCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEe
Q 001534 482 WDVVAGRKQYTFEGH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1058)
Q Consensus 482 wd~~~~~~~~~l~~~-~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1058)
||+ .|+.+...++- ...|.++++. .||+++++.+.|..|++++.++...+. +.....+|+++..|.|++++++.-
T Consensus 339 wdl-Dgn~~~~W~gvr~~~v~dlait--~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 339 WDL-DGNILGNWEGVRDPKVHDLAIT--YDGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred ecC-CcchhhcccccccceeEEEEEc--CCCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEc
Confidence 996 45556666553 3568899988 566999999999999999988755543 333566899999999999999876
Q ss_pred cCCCCCceEEEeeCCCCceeEeecCCCCCc-eeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceE
Q 001534 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRS-LGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1058)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~-v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1058)
. +..+++||+.....++.+.||..+. +-.-||.. +..++++|++|+.|+||+..+++++..+.+|.. .|+++
T Consensus 415 ~----~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcV 488 (519)
T KOG0293|consen 415 Q----DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCV 488 (519)
T ss_pred c----cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEE
Confidence 4 6779999999999999999997642 33344543 457899999999999999999999999998865 79999
Q ss_pred EEeC-CCCEEEEEECCCcEEEEECCC
Q 001534 639 RFNK-EGSLLAVTTSDNGIKILANSD 663 (1058)
Q Consensus 639 ~~s~-~~~~l~~~~~dg~i~iw~~~~ 663 (1058)
+|+| +..++|++++||+||||....
T Consensus 489 swNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 489 SWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999 677899999999999998754
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-66 Score=487.29 Aligned_cols=489 Identities=20% Similarity=0.305 Sum_probs=407.4
Q ss_pred hHHHHHHHHHHhhhcCHHHHHHHHHHHhCCCcc----HHHHHHHHhcCCHHHHHHHhcCCCccccccchhhHHHHHHHHH
Q 001534 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQK 80 (1058)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 80 (1058)
+.||||||.|||+|+.+++++++||+|.++++| ++.|.++|.+|+||.++..++.| +++.+.+..||+|.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHHH
Confidence 569999999999999999999999999999998 89999999999999999998877 77778999999999
Q ss_pred HHHHHccCCHHHHHHHHHhh--cccccccCHHHHHHHHHhhcccCccccchhccCCCchhHHHHHHHHHHhhcccCcccc
Q 001534 81 YLEALDRQDRAKAVEILVKD--LKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFR 158 (1058)
Q Consensus 81 ~lEll~~~~~~~A~~~l~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~ 158 (1058)
.|||+|.++...|..+||+. +..+...++++|-+|+.|+..+.++.++.+.+ .+..++|..+.+.|...+..
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V----- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV----- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence 99999999999999999975 55566678999999999999999999997654 33555677888888776655
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHHhhCCCCCCCCCcc-cccccCccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCC
Q 001534 159 DKLSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIK-TLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAH 237 (1058)
Q Consensus 159 ~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~-sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 237 (1058)
+||+||+.||+||++||+++++.| |+.. +||.+.....
T Consensus 155 -------VppSRLlaLlGQaLKWQqHQGLLP---PGt~iDLFRGkAA~K------------------------------- 193 (508)
T KOG0275|consen 155 -------VPPSRLLALLGQALKWQQHQGLLP---PGTTIDLFRGKAAMK------------------------------- 193 (508)
T ss_pred -------cChHHHHHHHHHHhhhHhhcCCCC---CCceeeeccchhhhh-------------------------------
Confidence 999999999999999999999988 5443 5554333322
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCCchhhhhhcccCCcce
Q 001534 238 GPFQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDE 317 (1058)
Q Consensus 238 ~~~~~~~~~~~fs~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1058)
.....++|. ++....++
T Consensus 194 ---------------------------------------------~~~Ee~~Pt-------------~l~r~IKF----- 210 (508)
T KOG0275|consen 194 ---------------------------------------------DQEEERYPT-------------QLARSIKF----- 210 (508)
T ss_pred ---------------------------------------------hhHhhhchH-------------Hhhhheec-----
Confidence 000111211 12111111
Q ss_pred eeecCCCCCcceecCCccccceeEeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeeccccccc
Q 001534 318 VSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM 397 (1058)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 397 (1058)
...+.+.|..|||||+ +|++|+.||.|.|||..+|+......++.-
T Consensus 211 --------------------------g~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAq------- 256 (508)
T KOG0275|consen 211 --------------------------GQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ------- 256 (508)
T ss_pred --------------------------ccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhh-------
Confidence 1234688999999998 799999999999999999987664332211
Q ss_pred ccccccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCC
Q 001534 398 PLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1058)
Q Consensus 398 ~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~ 477 (1058)
.-+.-+..+|.|+.||.|...||+|+.||.|++|.+.+|.+++.+- .+|+..|+|+.||.|+. .+++++.|.
T Consensus 257 ----d~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~ 328 (508)
T KOG0275|consen 257 ----DNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQ 328 (508)
T ss_pred ----cceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccc
Confidence 1144578899999999999999999999999999999999988432 38999999999999999 699999999
Q ss_pred cEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCC--CcEEEEEEcCC-CC
Q 001534 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG--NWCTMMAYSAD-GT 554 (1058)
Q Consensus 478 ~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~--~~v~~~~~s~~-~~ 554 (1058)
++++.-+++|++++.++||+..|+...|. ++|+.+++++.||+|++|+..+.++..++...+ .+|.++..-|. -.
T Consensus 329 tvRiHGlKSGK~LKEfrGHsSyvn~a~ft--~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe 406 (508)
T KOG0275|consen 329 TVRIHGLKSGKCLKEFRGHSSYVNEATFT--DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE 406 (508)
T ss_pred eEEEeccccchhHHHhcCccccccceEEc--CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc
Confidence 99999999999999999999999999998 566999999999999999999999888776543 37788877774 45
Q ss_pred EEEEEecCCCCCceEEEeeCCCCceeEeecCCC--CCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCC
Q 001534 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (1058)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1058)
.+++|. ..+++++.++. |+.++++.... ++..-+++.+|.|.++++.++|+.++.|...+|++..++..|..
T Consensus 407 h~iVCN----rsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk- 480 (508)
T KOG0275|consen 407 HFIVCN----RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK- 480 (508)
T ss_pred eEEEEc----CCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc-
Confidence 677775 47789999986 88888886542 23566778999999999999999999999999999999987765
Q ss_pred CCcceEEEeCCCCEEEEEECCCcEEEEE
Q 001534 633 PASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1058)
Q Consensus 633 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 660 (1058)
.+..++-+|..+.+|+-+.||.+++|.
T Consensus 481 -dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 -DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred -cccccccCcccchhhhhcccchhhhcC
Confidence 578899999999999999999999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=473.05 Aligned_cols=575 Identities=18% Similarity=0.247 Sum_probs=473.6
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEEccCccc-cccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCCC
Q 001534 352 MDFHPQQQTILLVGTNVGDISLWEVGSRER-LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1058)
Q Consensus 352 ~~fspdg~~lla~g~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~ 430 (1058)
++||++|+ +|++.. ...|.+-|+.++.. +.. .-......+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~-~d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTAC-GDRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEec-CceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999998 677654 34688999999876 321 1234567899999999999999999999
Q ss_pred eEEEEEecCCCceeeeeeeec-CcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccC
Q 001534 431 IVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509 (1058)
Q Consensus 431 ~i~vwd~~~~~~~~~~~~~~~-h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~ 509 (1058)
.+++|++.+++.++ .++. |.+||.-++|+|.+. ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|+|..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998777 5555 999999999999997 99999999999999999999999999999999999999998
Q ss_pred CccEEEEEeCCCeEEEEeCCCCCc-eEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCC
Q 001534 510 SIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588 (1058)
Q Consensus 510 ~~~~l~s~s~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 588 (1058)
+...|++|..|+++++||+..... ...+..|.+.|++++|++|+..+++++. |..+.+||+.+-+..+.++...
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 888899999999999999996555 6678889999999999999999999985 8889999998777766666544
Q ss_pred CceeEEEEcCC-----CCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCC
Q 001534 589 RSLGVVQFDTT-----RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1058)
Q Consensus 589 ~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1058)
.+.++.+-++ +.+++++|.+|.+++||.++++.+........ ..+..+...+....++..+.|..+.++|..+
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~-~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDS-EEIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCc-hhhhcceeccccCceEEEEccceEEEEEccc
Confidence 4667777776 67999999999999999999988776654432 2366677777667778888899999999988
Q ss_pred CceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccc
Q 001534 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED 743 (1058)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1058)
. ++.+.+.|....+... ...| ..+....++..
T Consensus 313 l-~i~k~ivG~ndEI~Dm------------~~lG-----------------------------------~e~~~laVATN 344 (775)
T KOG0319|consen 313 L-TIVKQIVGYNDEILDM------------KFLG-----------------------------------PEESHLAVATN 344 (775)
T ss_pred c-EEehhhcCCchhheee------------eecC-----------------------------------CccceEEEEeC
Confidence 8 7777777776665432 1111 12233445556
Q ss_pred cccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCC
Q 001534 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 823 (1058)
Q Consensus 744 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1058)
.+.+|+++..+. .+. -++ +|...|.++....+|-.|++++.|..+++|.++.+..
T Consensus 345 s~~lr~y~~~~~----~c~--ii~--GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~----------------- 399 (775)
T KOG0319|consen 345 SPELRLYTLPTS----YCQ--IIP--GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS----------------- 399 (775)
T ss_pred CCceEEEecCCC----ceE--EEe--CchhheeeeeecccCcEEEEecCCceEEEEEecCCcc-----------------
Confidence 689999977642 222 233 4999999999888889999999999999998742111
Q ss_pred CCCCccccccCCCCCCCCCeeEEEEccCC-cEEEEEe-CCeEEEEECCCce---------EEEEecCCCCCeEEEEEeCC
Q 001534 824 PSGTLMTNDINESKPTEESAACIALSKND-SYVMSAS-GGKVSLFNMMTFK---------VMTMFMSPPPAATFLAFHPQ 892 (1058)
Q Consensus 824 ~~~~~~~~~~~~~~h~~~~i~~~~~s~d~-~~la~~s-dg~i~iwd~~~~~---------~~~~~~~~~~~i~~l~~s~~ 892 (1058)
..... -...+| .+.|.+++++..+ .+++++| |.++++|++...+ +..+...|...|++++++|
T Consensus 400 --~~~~~--a~~~gH-~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~- 473 (775)
T KOG0319|consen 400 --KSLCV--AQANGH-TNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP- 473 (775)
T ss_pred --hhhhh--hhhccc-ccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-
Confidence 01111 122338 9999999998765 4788888 9999999997621 1123356899999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCC
Q 001534 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS 972 (1058)
Q Consensus 893 ~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 972 (1058)
+.+++|||+.|++.+||+++.+....+|.||...|.++.|+|..+.|||+|.|++|+||.+++.. |++.+.||.
T Consensus 474 ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS-----ClkT~eGH~- 547 (775)
T KOG0319|consen 474 NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS-----CLKTFEGHT- 547 (775)
T ss_pred CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce-----eeeeecCcc-
Confidence 89999999999999999999999999999999999999999999999999999999999999977 556678887
Q ss_pred CCCCeeEEEEcCCCcEEEEE-eCCeEEEEeC-CCCeeeEEeecc--ccceEEccCCcEEEEEECCCeEEEEcCCCCC
Q 001534 973 PLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLECSRSVSFLS--LCPYVFGVSSIFLLSTLTKLSVAVHDPLMKF 1045 (1058)
Q Consensus 973 ~~~~v~~~~fs~d~~~l~~~-~d~~i~vwd~-~~~~~~~~~~~~--~~~~~~s~~~~~l~~~~~d~~v~vw~~~~~~ 1045 (1058)
.+|..+.|-.+|+.|+++ .||-+++|++ +.+|+..+..+. +=.+..++.+.++++++.|+.+.+|.-....
T Consensus 548 --~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 548 --SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred --ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence 789999999999999996 9999999999 999999998755 5567778899999999999999999755443
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-55 Score=461.65 Aligned_cols=573 Identities=13% Similarity=0.219 Sum_probs=460.2
Q ss_pred eeecCCCCCcceecC------Cccccce-eEeec--CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcce
Q 001534 318 VSFAGVAHTPNVYSQ------DDLTKTV-VRTLN--QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFK 388 (1058)
Q Consensus 318 ~~~~~~~~~~~~~~~------~~~~~~~-~~~~~--h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~ 388 (1058)
++++++|+.+..... |..+... +.... ....+++++.+||++ .|++++..+.+++|++.+++.+..
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs---- 99 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS---- 99 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh----
Confidence 666666665544332 2334444 33333 567899999999997 788889999999999999987653
Q ss_pred eecccccccccccccccC-CCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCc
Q 001534 389 VWDISAASMPLQNALLND-AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ 467 (1058)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~-h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~ 467 (1058)
.+. |++||.-++|+|.|..|++|+.|+.++|||+..+.+.. .|+||.+.|.++.|.|+-.+
T Consensus 100 ---------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~ 161 (775)
T KOG0319|consen 100 ---------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNR 161 (775)
T ss_pred ---------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccch
Confidence 333 99999999999999999999999999999999987666 88999999999999999876
Q ss_pred eEEEEEcCCCcEEEEEcCCCce-eEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEE
Q 001534 468 LCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 546 (1058)
Q Consensus 468 ~~l~s~~~d~~v~vwd~~~~~~-~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 546 (1058)
.+|++|..|+++++||+.+.+. +..+..|.+.|+++++.++ +..+++++.|..+.+||+...+...++... ..+.+
T Consensus 162 ~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d--~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~ 238 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSED--SLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLES 238 (775)
T ss_pred hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccC--CceEEEeccCcEEEEeehhhhhhhheechh-hheee
Confidence 6789999999999999996655 8889999999999999965 589999999999999999665555544432 24556
Q ss_pred EEEcCC-----CCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 001534 547 MAYSAD-----GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1058)
Q Consensus 547 ~~~s~~-----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1058)
+.+-++ |.+++++| +++.+++||..+++++..........+..+...+....+++...|..+.++|.++.+
T Consensus 239 vv~l~~~~~~~~~~~~TaG----~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~ 314 (775)
T KOG0319|consen 239 VVRLREELGGKGEYIITAG----GSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT 314 (775)
T ss_pred EEEechhcCCcceEEEEec----CCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence 666666 67899887 488899999999887766554433346666666667778888889999999999999
Q ss_pred eEEEEecCCCCCCcceEEEe-CCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCc
Q 001534 622 MLTTVDADGGLPASPRLRFN-KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPAS 700 (1058)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1058)
....+-+... .|..+.|- |+.++||+++..+.+|+|+..+.. +. .+.+|...+....
T Consensus 315 i~k~ivG~nd--EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~-c~-ii~GH~e~vlSL~------------------ 372 (775)
T KOG0319|consen 315 IVKQIVGYND--EILDMKFLGPEESHLAVATNSPELRLYTLPTSY-CQ-IIPGHTEAVLSLD------------------ 372 (775)
T ss_pred EehhhcCCch--hheeeeecCCccceEEEEeCCCceEEEecCCCc-eE-EEeCchhheeeee------------------
Confidence 8888876544 68888764 688999999999999999887763 32 7788887655321
Q ss_pred ccccccCCCCCCCCCCCCCccccccCCCCCccccCCcccc-ccccccccccccCCcCCccceeEEecCCCcCcCceEEEE
Q 001534 701 NVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV-AEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779 (1058)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 779 (1058)
....|..++ ++.|+++++|.+++......+ .....+|.+.|.+++
T Consensus 373 -------------------------------~~~~g~llat~sKD~svilWr~~~~~~~~~~---~a~~~gH~~svgava 418 (775)
T KOG0319|consen 373 -------------------------------VWSSGDLLATGSKDKSVILWRLNNNCSKSLC---VAQANGHTNSVGAVA 418 (775)
T ss_pred -------------------------------ecccCcEEEEecCCceEEEEEecCCcchhhh---hhhhcccccccceee
Confidence 123343344 456899999998542221111 112256999999999
Q ss_pred EccCC-ceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEE
Q 001534 780 YTNSG-LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA 858 (1058)
Q Consensus 780 ~s~~g-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~ 858 (1058)
++..+ ..+++++.|+++++|+++..+.... ............| ...|.+++++|+.+++|+|
T Consensus 419 ~~~~~asffvsvS~D~tlK~W~l~~s~~~~~----------------~~~~~~~~t~~aH-dKdIN~Vaia~ndkLiAT~ 481 (775)
T KOG0319|consen 419 GSKLGASFFVSVSQDCTLKLWDLPKSKETAF----------------PIVLTCRYTERAH-DKDINCVAIAPNDKLIATG 481 (775)
T ss_pred ecccCccEEEEecCCceEEEecCCCcccccc----------------cceehhhHHHHhh-cccccceEecCCCceEEec
Confidence 97765 4678899999999999876211110 0001011122348 9999999999999999999
Q ss_pred e-CCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEEEEEcCCCC
Q 001534 859 S-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 937 (1058)
Q Consensus 859 s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~ 937 (1058)
| |.+.+||+++.++...++.||...|.++.|+| ..+++||+|.|++|+||.+.+..|++++.||...|..+.|-.+|+
T Consensus 482 SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~ 560 (775)
T KOG0319|consen 482 SQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGK 560 (775)
T ss_pred ccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCc
Confidence 9 99999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEE-eCCeEEEEeC
Q 001534 938 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS 1002 (1058)
Q Consensus 938 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~-~d~~i~vwd~ 1002 (1058)
.|+|++.||.|++|++.+++|. .....|. ..|.+++-+|++.++++| .||.|.+|.=
T Consensus 561 qliS~~adGliKlWnikt~eC~-----~tlD~H~---DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 561 QLISAGADGLIKLWNIKTNECE-----MTLDAHN---DRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred EEEeccCCCcEEEEeccchhhh-----hhhhhcc---ceeEEEeecCccceeEecCCCeEEEEeec
Confidence 9999999999999999998754 4566776 779999999999999996 9999999975
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-51 Score=413.09 Aligned_cols=555 Identities=16% Similarity=0.225 Sum_probs=437.3
Q ss_pred CCCCCcceecCCccccceeEeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeeccccccccccc
Q 001534 322 GVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQN 401 (1058)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1058)
++|+.+.+...+......+ --+|..+++-..|||.|. ++|+|...|.|+|||....+.+.+.+|
T Consensus 36 ~nGksv~ir~i~~~~~~~i-YtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef-------------- 99 (603)
T KOG0318|consen 36 TNGKSVIIRNIDNPASVDI-YTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEF-------------- 99 (603)
T ss_pred eCCCEEEEEECCCccceee-eccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeee--------------
Confidence 4466666666665554333 335889999999999996 899999999999999987555543333
Q ss_pred ccccCCCcCeEEEEECCCCCEEEEEeC--CCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcE
Q 001534 402 ALLNDAAISVNRCVWGPDGLMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1058)
Q Consensus 402 ~~~~~h~~~v~~~~~spd~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v 479 (1058)
..-.++|..++|++|+++|++.+. +...+++-.++|..+. ++.||...|++++|-|.... +++||++|++|
T Consensus 100 ---~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v 172 (603)
T KOG0318|consen 100 ---QVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTV 172 (603)
T ss_pred ---eecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeE
Confidence 345779999999999999887643 4445555555666666 78899999999999987776 99999999999
Q ss_pred EEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEec---CCCCcEEEEEEcCCCCEE
Q 001534 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGNWCTMMAYSADGTRL 556 (1058)
Q Consensus 480 ~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l 556 (1058)
.+|+=.--+...+++.|...|+++.|+|+ |..+++++.||++.+||-.+++....+. .|.+.|.+++|+||++.+
T Consensus 173 ~ffeGPPFKFk~s~r~HskFV~~VRysPD--G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~ 250 (603)
T KOG0318|consen 173 AFFEGPPFKFKSSFREHSKFVNCVRYSPD--GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQF 250 (603)
T ss_pred EEeeCCCeeeeecccccccceeeEEECCC--CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceE
Confidence 99986666667788899999999999965 6899999999999999999999998887 789999999999999999
Q ss_pred EEEecCCCCCceEEEeeCCCCceeEeecCCCC---CceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCC
Q 001534 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRK---RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633 (1058)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1058)
++++. |.++++||..+.++++++..... ..+.++ |. +..|++.+.+|.|.+++......+..+.+|..
T Consensus 251 ~T~Sa----Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l-Wq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-- 321 (603)
T KOG0318|consen 251 LTVSA----DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL-WQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK-- 321 (603)
T ss_pred EEecC----CceEEEEEeeccceEEEeecCCchhceEEEEE-Ee--CCeEEEEEcCcEEEEecccCCChhheeccccc--
Confidence 99985 77899999999999998875433 123333 54 56899999999999999999998888887754
Q ss_pred CcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCC
Q 001534 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 713 (1058)
Q Consensus 634 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1058)
.|++++.+|++++|++|+.||.|.-|+..++......-++|...+...
T Consensus 322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~-------------------------------- 369 (603)
T KOG0318|consen 322 SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGM-------------------------------- 369 (603)
T ss_pred ceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEE--------------------------------
Confidence 799999999999999999999999999988843332224454433221
Q ss_pred CCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeecc
Q 001534 714 DRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN 793 (1058)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 793 (1058)
.....+.++.++.|.++++.++......... .+. -..+..+++..+++..++.++.+
T Consensus 370 -----------------~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~-~~~-----lg~QP~~lav~~d~~~avv~~~~ 426 (603)
T KOG0318|consen 370 -----------------AASESGELFTIGWDDTLRVISLKDNGYTKSE-VVK-----LGSQPKGLAVLSDGGTAVVACIS 426 (603)
T ss_pred -----------------eecCCCcEEEEecCCeEEEEecccCcccccc-eee-----cCCCceeEEEcCCCCEEEEEecC
Confidence 1233467788888999999987543222211 112 12334488899998877777766
Q ss_pred ceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEECCCce
Q 001534 794 AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK 872 (1058)
Q Consensus 794 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~ 872 (1058)
+.+.+-+.. .+...++ .-...++|++|+++.+|+|+ |+.|+||.+....
T Consensus 427 ~iv~l~~~~------------------------~~~~~~~------~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~ 476 (603)
T KOG0318|consen 427 DIVLLQDQT------------------------KVSSIPI------GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDE 476 (603)
T ss_pred cEEEEecCC------------------------cceeecc------ccccceEEEcCCCCEEEEecccceEEEEEecCCc
Confidence 655543221 1111111 44568999999999999999 9999999998755
Q ss_pred EE--EEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEE-EEeCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 001534 873 VM--TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KLKGHQNRITGLAFSPTLNALVSSGADAQLC 949 (1058)
Q Consensus 873 ~~--~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~-~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~ 949 (1058)
+. ..+..|.++|++++||| |+.+||+|...+.|.+||+.+.+... .+.-|...|.+|+|||+.+++||||.|..|.
T Consensus 477 l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Vi 555 (603)
T KOG0318|consen 477 LKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVI 555 (603)
T ss_pred ccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEE
Confidence 33 34566999999999999 99999999999999999999887633 3445999999999999999999999999999
Q ss_pred EEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEEeCCeEEEEeCC
Q 001534 950 MWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSK 1003 (1058)
Q Consensus 950 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~~d~~i~vwd~~ 1003 (1058)
||+++..... +.+...|. ..|+.+.|-.+...+-+|.|..|++|+++
T Consensus 556 iysv~kP~~~----i~iknAH~---~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 556 IYSVKKPAKH----IIIKNAHL---GGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEccChhhh----eEeccccc---cCceeEEEecCceEEeccCcceeEEeccc
Confidence 9999884422 55566665 55999999999998888999999999873
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=419.67 Aligned_cols=537 Identities=16% Similarity=0.283 Sum_probs=430.3
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCCC
Q 001534 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1058)
Q Consensus 351 ~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~ 430 (1058)
.+.|++||..++ ....+.|.++|+.+++.... .-.+...|.+++.||+|.+|++....|
T Consensus 19 nl~ft~dG~svi--SPvGNrvsv~dLknN~S~Tl-------------------~~e~~~NI~~ialSp~g~lllavdE~g 77 (893)
T KOG0291|consen 19 NLVFTKDGNSVI--SPVGNRVSVFDLKNNKSYTL-------------------PLETRYNITRIALSPDGTLLLAVDERG 77 (893)
T ss_pred cEEECCCCCEEE--eccCCEEEEEEccCCcceeE-------------------EeecCCceEEEEeCCCceEEEEEcCCC
Confidence 478999997433 34578999999998764321 234778899999999999999999999
Q ss_pred eEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCc--------eeEEeeCCCCCeEE
Q 001534 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR--------KQYTFEGHEAPVYS 502 (1058)
Q Consensus 431 ~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~--------~~~~l~~~~~~v~~ 502 (1058)
...+-++.....+.. + ..+.+|.++.|||+|+ ++|.|. .+.+.||...... ..+++.+|...|.+
T Consensus 78 ~~~lvs~~~r~Vlh~---f-~fk~~v~~i~fSPng~--~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~s 150 (893)
T KOG0291|consen 78 RALLVSLLSRSVLHR---F-NFKRGVGAIKFSPNGK--FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITS 150 (893)
T ss_pred cEEEEecccceeeEE---E-eecCccceEEECCCCc--EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeE
Confidence 999888877554432 2 2467899999999999 566554 6689999864322 24567889999999
Q ss_pred EEecccCCccEEEEEeCCCeEEEEeCCCCCc--eEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCC----
Q 001534 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---- 576 (1058)
Q Consensus 503 ~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---- 576 (1058)
+.|+. |..+|++|+.|-+.++|+++..+. ...+.+|...|.+..|..+...+++.+ +||.+.+|....
T Consensus 151 i~Ws~--DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvs----kdG~l~~W~~~~~P~~ 224 (893)
T KOG0291|consen 151 IDWSD--DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVS----KDGALFVWTCDLRPPE 224 (893)
T ss_pred EEecc--CCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEe----cCceEEEEEecCCCcc
Confidence 99994 558999999999999999998777 556788999999999999999999987 488999997651
Q ss_pred -------------------Cce-----e-----EeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001534 577 -------------------GAI-----K-----RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1058)
Q Consensus 577 -------------------~~~-----~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1058)
++. . +-+-......+.+.+|++..+.|++|-..|...+|.+....+++.+.
T Consensus 225 ~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LS 304 (893)
T KOG0291|consen 225 LDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLS 304 (893)
T ss_pred cccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEee
Confidence 111 0 00111122368899999999999999999999999999999999998
Q ss_pred cCCCCCCcceEEEeCCCCEEEEEECC-CcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCccccccc
Q 001534 628 ADGGLPASPRLRFNKEGSLLAVTTSD-NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAI 706 (1058)
Q Consensus 628 ~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1058)
...+ .|..++|+..|.+||.|+.. |.+-+|+..+..-
T Consensus 305 is~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY---------------------------------------- 342 (893)
T KOG0291|consen 305 ISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY---------------------------------------- 342 (893)
T ss_pred cccc--eeeEEEecccCCEEEEcCCccceEEEEEeeccce----------------------------------------
Confidence 7655 79999999999999999875 7888998765411
Q ss_pred CCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCce
Q 001534 707 APTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLS 786 (1058)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 786 (1058)
.+..++|...++++++||||++
T Consensus 343 ----------------------------------------------------------VlKQQgH~~~i~~l~YSpDgq~ 364 (893)
T KOG0291|consen 343 ----------------------------------------------------------VLKQQGHSDRITSLAYSPDGQL 364 (893)
T ss_pred ----------------------------------------------------------eeeccccccceeeEEECCCCcE
Confidence 1112348889999999999999
Q ss_pred EEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEE
Q 001534 787 LLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSL 865 (1058)
Q Consensus 787 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~i 865 (1058)
+++|++||.|++||. .+|.+... +.. | ...|+.+.|+.+|+.+++++ ||+|+.
T Consensus 365 iaTG~eDgKVKvWn~----------------------~SgfC~vT-Fte--H-ts~Vt~v~f~~~g~~llssSLDGtVRA 418 (893)
T KOG0291|consen 365 IATGAEDGKVKVWNT----------------------QSGFCFVT-FTE--H-TSGVTAVQFTARGNVLLSSSLDGTVRA 418 (893)
T ss_pred EEeccCCCcEEEEec----------------------cCceEEEE-ecc--C-CCceEEEEEEecCCEEEEeecCCeEEe
Confidence 999999999999865 45555543 444 8 99999999999999999999 999999
Q ss_pred EECCCceEEEEecCCCC-CeEEEEEeCCCCCEEEEEeCCC-eEEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEEe
Q 001534 866 FNMMTFKVMTMFMSPPP-AATFLAFHPQDNNIIAIGMEDS-SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG 943 (1058)
Q Consensus 866 wd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~~lasg~~dg-~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s 943 (1058)
||+..++..++|..+.. ...|++..| .|.++..|+.|. .|++|++.+|+++..+.||.++|.+++|+|++..|||+|
T Consensus 419 wDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 419 WDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS 497 (893)
T ss_pred eeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc
Confidence 99999999999987654 578899999 899999999887 699999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEE-eCCeEEEEeC-CCCeeeEEee---------
Q 001534 944 ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLECSRSVSF--------- 1012 (1058)
Q Consensus 944 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~-~d~~i~vwd~-~~~~~~~~~~--------- 1012 (1058)
.|.+|++||+-....... .++. . ..+..++|+|||+.|+++ .||.|.+||+ .......+.+
T Consensus 498 WDkTVRiW~if~s~~~vE-tl~i--~-----sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~ 569 (893)
T KOG0291|consen 498 WDKTVRIWDIFSSSGTVE-TLEI--R-----SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRK 569 (893)
T ss_pred ccceEEEEEeeccCceee-eEee--c-----cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccc
Confidence 999999999966422211 1221 1 347999999999999997 9999999999 4444433322
Q ss_pred -------------ccccceEEccCCcEEEEEECCCeEEEEcCCCC-----CccCCccccccc
Q 001534 1013 -------------LSLCPYVFGVSSIFLLSTLTKLSVAVHDPLMK-----FDRKRKVPWRGV 1056 (1058)
Q Consensus 1013 -------------~~~~~~~~s~~~~~l~~~~~d~~v~vw~~~~~-----~~~~~~~~~~~~ 1056 (1058)
..++.+++++||+++++++....|++|+.-.. +....-..|+|+
T Consensus 570 ~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~ 631 (893)
T KOG0291|consen 570 ETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGV 631 (893)
T ss_pred ccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHH
Confidence 12889999999999999999999999985433 333344445554
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=410.28 Aligned_cols=527 Identities=16% Similarity=0.244 Sum_probs=415.9
Q ss_pred ecCCCCCcceecCCccccceeEeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeeccccccccc
Q 001534 320 FAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 399 (1058)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1058)
++|.|..+.++...+.+ .....+++...|++++.||+|. +|++-...|...+-++.....++...
T Consensus 30 iSPvGNrvsv~dLknN~-S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~------------- 94 (893)
T KOG0291|consen 30 ISPVGNRVSVFDLKNNK-SYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFN------------- 94 (893)
T ss_pred EeccCCEEEEEEccCCc-ceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEe-------------
Confidence 55666666666544322 1233455888999999999997 66666788999999988776665322
Q ss_pred ccccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCc-----eeeeeeeecCcCCeEEEEEecCCCceEEEEEc
Q 001534 400 QNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE-----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474 (1058)
Q Consensus 400 ~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~-----~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~ 474 (1058)
-+.+|.|+.|||||+++|+|.. +.+.||....... +....++.+|...|+++.|+.|.+ +|++|+
T Consensus 95 -------fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gs 164 (893)
T KOG0291|consen 95 -------FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGS 164 (893)
T ss_pred -------ecCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEecc
Confidence 3568999999999999999854 4799998765322 334456778999999999999998 899999
Q ss_pred CCCcEEEEEcCCCce--eEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCC----------------------
Q 001534 475 DDKMIKVWDVVAGRK--QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY---------------------- 530 (1058)
Q Consensus 475 ~d~~v~vwd~~~~~~--~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~---------------------- 530 (1058)
.|.++++|+++..+. .+.+.+|...|.+.-|..+ ...+++.+.||.+.+|....
T Consensus 165 rD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~--~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~ 242 (893)
T KOG0291|consen 165 RDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGAN--SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDE 242 (893)
T ss_pred ccceEEEEEeccccccceEeccCCCcceEEEEeccC--cceEEEEecCceEEEEEecCCCcccccccccccccccccccc
Confidence 999999999987665 6678899999999988754 37899999999999997761
Q ss_pred -CCc-----eE------EecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcC
Q 001534 531 -LGS-----RV------DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1058)
Q Consensus 531 -~~~-----~~------~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1058)
++. .. -+......+++.+|++..+.|+++-. .|...+|++....+++.+.-... .|..++|+.
T Consensus 243 ~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~-~I~t~~~N~ 317 (893)
T KOG0291|consen 243 DGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ-KILTVSFNS 317 (893)
T ss_pred cchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc-eeeEEEecc
Confidence 111 00 11223368899999999999998874 67788999999999999987766 899999999
Q ss_pred CCCEEEEEeC-CCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCccc
Q 001534 599 TRNRFLAAGD-EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMD 677 (1058)
Q Consensus 599 ~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 677 (1058)
.|.+++.|+. -|.+-||+..+..-+...++ |...+++++++|||+++|+|+.||.|+|||...+ -++.++..
T Consensus 318 tGDWiA~g~~klgQLlVweWqsEsYVlKQQg--H~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~vTFte---- 390 (893)
T KOG0291|consen 318 TGDWIAFGCSKLGQLLVWEWQSESYVLKQQG--HSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFVTFTE---- 390 (893)
T ss_pred cCCEEEEcCCccceEEEEEeeccceeeeccc--cccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEEEecc----
Confidence 9999999774 48999999988666655554 4558999999999999999999999999999887 44444432
Q ss_pred ccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCC
Q 001534 678 KNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISD 757 (1058)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~ 757 (1058)
T Consensus 391 -------------------------------------------------------------------------------- 390 (893)
T KOG0291|consen 391 -------------------------------------------------------------------------------- 390 (893)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCC
Q 001534 758 PSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESK 837 (1058)
Q Consensus 758 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (1058)
|.+.|+.+.|+..|+.+++++-||+|+.||+.. ....+. +..
T Consensus 391 -------------Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR----------------------YrNfRT-ft~-- 432 (893)
T KOG0291|consen 391 -------------HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR----------------------YRNFRT-FTS-- 432 (893)
T ss_pred -------------CCCceEEEEEEecCCEEEEeecCCeEEeeeecc----------------------cceeee-ecC--
Confidence 777899999999999999999999999998742 111111 222
Q ss_pred CCCCCeeEEEEccCCcEEEEEe-CC-eEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccc-
Q 001534 838 PTEESAACIALSKNDSYVMSAS-GG-KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD- 914 (1058)
Q Consensus 838 h~~~~i~~~~~s~d~~~la~~s-dg-~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~- 914 (1058)
+.+....|++..|.|..+.+|+ |. .|.+|++++|+++-.+.||.++|.+++|+| ++..||+|++|.+|++||+-..
T Consensus 433 P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~ 511 (893)
T KOG0291|consen 433 PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSS 511 (893)
T ss_pred CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccC
Confidence 1145567899999999999998 54 599999999999999999999999999999 9999999999999999998754
Q ss_pred eeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccce------------eeecCCCCCCCCCCeeEEEE
Q 001534 915 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR------------FIQAPAGRQSPLVGETKVQF 982 (1058)
Q Consensus 915 ~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~------------~~~~~~~~~~~~~~v~~~~f 982 (1058)
..+.++. +...+..++|+|||+.||+++-||.|.+||++.+...... .-.....+.......+.+++
T Consensus 512 ~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~y 590 (893)
T KOG0291|consen 512 GTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICY 590 (893)
T ss_pred ceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEE
Confidence 3345555 6777999999999999999999999999998765433110 00011122222356899999
Q ss_pred cCCCcEEEEE-eCCeEEEEeC-CCC
Q 001534 983 HNDQTHLLVV-HESQISVYDS-KLE 1005 (1058)
Q Consensus 983 s~d~~~l~~~-~d~~i~vwd~-~~~ 1005 (1058)
|+||++|++| ..+.|.+|++ ++-
T Consensus 591 SaDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 591 SADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred cCCCCEEEecCCcccEEEEECchhh
Confidence 9999999996 8888999998 533
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=394.68 Aligned_cols=527 Identities=14% Similarity=0.215 Sum_probs=409.3
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCCCe
Q 001534 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1058)
Q Consensus 352 ~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~ 431 (1058)
+.-.|.|..++.+. ...|.+-++++..... ++.+|...++-..|||.|.++|+|...|.
T Consensus 24 ig~dpkgd~ilY~n--Gksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG~ 82 (603)
T KOG0318|consen 24 IGGDPKGDNILYTN--GKSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSGK 82 (603)
T ss_pred eccCCCCCeEEEeC--CCEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcCc
Confidence 34467787787764 5678888888765432 37889999999999999999999999999
Q ss_pred EEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEE-cCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCC
Q 001534 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510 (1058)
Q Consensus 432 i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~-~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~ 510 (1058)
|||||....+.+ ...+++...++|.+++|++|+++ +.++| +.++..+++-+++|..+..+.||...|+++.|-|...
T Consensus 83 vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R-I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRP 160 (603)
T KOG0318|consen 83 VRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR-IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRP 160 (603)
T ss_pred EEEEeccCccee-eeeeeeecccccccceeCCCCcE-EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCc
Confidence 999998764332 22366677899999999999996 33333 3343444444458899999999999999999998765
Q ss_pred ccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeec---CCC
Q 001534 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS---GFR 587 (1058)
Q Consensus 511 ~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~~~ 587 (1058)
-.+++|++|++|.+|+-...+....+..|...|.++.|+|||.++++++. |+++++||-.+|+.+..+. +|.
T Consensus 161 -fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~aHk 235 (603)
T KOG0318|consen 161 -FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDAHK 235 (603)
T ss_pred -eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCCcc
Confidence 68999999999999976666666677778889999999999999999985 8889999999999999998 676
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCC-CCcceEEEeCCCCEEEEEECCCcEEEEECCCCce
Q 001534 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL-PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVR 666 (1058)
Q Consensus 588 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 666 (1058)
+ .|.+++|+||+..+++++.|.+++|||+.+.+++.++...... ..-..+.|. +..|++.+.+|.|.+++.....
T Consensus 236 G-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~- 311 (603)
T KOG0318|consen 236 G-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS- 311 (603)
T ss_pred c-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC-
Confidence 6 8999999999999999999999999999999999998765431 122344454 6689999999999999887662
Q ss_pred eeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCcccccccccc
Q 001534 667 LLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDK 746 (1058)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1058)
..+++.
T Consensus 312 ~~~~i~-------------------------------------------------------------------------- 317 (603)
T KOG0318|consen 312 VLKVIS-------------------------------------------------------------------------- 317 (603)
T ss_pred hhheec--------------------------------------------------------------------------
Confidence 332222
Q ss_pred ccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCC
Q 001534 747 IKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSG 826 (1058)
Q Consensus 747 v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (1058)
+|...|++++.+|++++|++++.||.|.-|+...+..
T Consensus 318 -----------------------GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~-------------------- 354 (603)
T KOG0318|consen 318 -----------------------GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS-------------------- 354 (603)
T ss_pred -----------------------ccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc--------------------
Confidence 3778899999999999999999999999998754321
Q ss_pred CccccccCCCCCCCCCeeEEEEccCCcEEEEEeCCeEEEEECCCce--------------EE-----------------E
Q 001534 827 TLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK--------------VM-----------------T 875 (1058)
Q Consensus 827 ~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~sdg~i~iwd~~~~~--------------~~-----------------~ 875 (1058)
- .+.+..| ...|.+++.+..+.++-++-|+++++.++.... .+ .
T Consensus 355 --~--~~~g~~h-~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv 429 (603)
T KOG0318|consen 355 --D--RLAGKGH-TNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIV 429 (603)
T ss_pred --c--ccccccc-cceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEE
Confidence 1 1323336 667777777666666555557777766553110 00 0
Q ss_pred EecC--------CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEccccee--EEEEeCCCCCeEEEEEcCCCCEEEEEeCC
Q 001534 876 MFMS--------PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGHQNRITGLAFSPTLNALVSSGAD 945 (1058)
Q Consensus 876 ~~~~--------~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~--~~~l~~h~~~v~~l~~spd~~~l~s~s~D 945 (1058)
.++. -.-...+++++| ++..+|+|++||.|+||.+..+++ ...+..|.++|+++++|||+.+||++...
T Consensus 430 ~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~ 508 (603)
T KOG0318|consen 430 LLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS 508 (603)
T ss_pred EEecCCcceeeccccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC
Confidence 0111 112467899999 999999999999999999987653 33567799999999999999999999999
Q ss_pred CcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEE-eCCeEEEEeC--CCCeeeEEee--ccccceEE
Q 001534 946 AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS--KLECSRSVSF--LSLCPYVF 1020 (1058)
Q Consensus 946 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~-~d~~i~vwd~--~~~~~~~~~~--~~~~~~~~ 1020 (1058)
+.+.+||+.+.+.... ...-|+ ..|.+++|||+.+++|+| -|.+|.||++ ..+.+...+. ..++.+.|
T Consensus 509 rkvv~yd~~s~~~~~~----~w~FHt---akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~w 581 (603)
T KOG0318|consen 509 RKVVLYDVASREVKTN----RWAFHT---AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAW 581 (603)
T ss_pred CcEEEEEcccCceecc----eeeeee---eeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEE
Confidence 9999999999775221 122244 679999999999999997 8999999999 3333333333 33777777
Q ss_pred ccCCcEEEEEECCCeEEEEcC
Q 001534 1021 GVSSIFLLSTLTKLSVAVHDP 1041 (1058)
Q Consensus 1021 s~~~~~l~~~~~d~~v~vw~~ 1041 (1058)
- |...+++++.|..|++|+.
T Consensus 582 l-de~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 582 L-DESTVVSSGQDANIKVWNV 601 (603)
T ss_pred e-cCceEEeccCcceeEEecc
Confidence 5 4556778899999999985
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-50 Score=420.63 Aligned_cols=499 Identities=14% Similarity=0.276 Sum_probs=402.6
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEE
Q 001534 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1058)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l 423 (1058)
....+|+|++-+||.. +||+|..||.|+||+..++..+.. +.+|+..|+++.|...|..|
T Consensus 63 ~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rl 122 (888)
T KOG0306|consen 63 KKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRL 122 (888)
T ss_pred cccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceE
Confidence 3456999999999996 899999999999999998765543 78999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEE
Q 001534 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1058)
Q Consensus 424 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~ 503 (1058)
|+||.|+.|.+||+-...-.. .+.||...|+.+-|..+.+ ++++.+.|+.|++||+++..+..+.-.|.+.++++
T Consensus 123 aSGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l 197 (888)
T KOG0306|consen 123 ASGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWAL 197 (888)
T ss_pred eecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEE
Confidence 999999999999998765444 7889999999999998666 89999999999999999999999999999999999
Q ss_pred EecccCCccEEEEEeCCCeEEEEeCCCCCce-------E------EecCC------------------------------
Q 001534 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-------V------DYDAP------------------------------ 540 (1058)
Q Consensus 504 ~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~-------~------~~~~~------------------------------ 540 (1058)
++.+ +.+++++.|+.+++|++....-. . .....
T Consensus 198 ~~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI 273 (888)
T KOG0306|consen 198 VLDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRI 273 (888)
T ss_pred EEec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheee
Confidence 9984 58999999999999998210000 0 00000
Q ss_pred ----------------------------------------------CCcEEEEEEcCCCC---EEEEEecCCCCCceEEE
Q 001534 541 ----------------------------------------------GNWCTMMAYSADGT---RLFSCGTSKEGESHLVE 571 (1058)
Q Consensus 541 ----------------------------------------------~~~v~~~~~s~~~~---~l~~~~~~~~~~~~i~~ 571 (1058)
...+.++.|.|.+. .++.- .++.+..
T Consensus 274 ~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l-----~nNtv~~ 348 (888)
T KOG0306|consen 274 RSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLL-----ANNTVEW 348 (888)
T ss_pred cCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEe-----ecCceEE
Confidence 11234555554432 22222 1444666
Q ss_pred eeCCCCcee---------EeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeC
Q 001534 572 WNESEGAIK---------RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1058)
Q Consensus 572 wd~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1058)
|.+...... ..+.+|.. .|.+++++.+...+++| ..+.+++|+..+.+++.++... .+.+..|-|
T Consensus 349 ysl~~s~~~~p~~~~~~~i~~~GHR~-dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~----y~l~~~Fvp 422 (888)
T KOG0306|consen 349 YSLENSGKTSPEADRTSNIEIGGHRS-DVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG----YILASKFVP 422 (888)
T ss_pred EEeccCCCCCccccccceeeeccchh-heeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc----cEEEEEecC
Confidence 655431111 34566766 79999999876555554 4678999999999999999764 578889999
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccc
Q 001534 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1058)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1058)
.++++++|...|.+.+||+.+. .+..+++
T Consensus 423 gd~~Iv~G~k~Gel~vfdlaS~-~l~Eti~-------------------------------------------------- 451 (888)
T KOG0306|consen 423 GDRYIVLGTKNGELQVFDLASA-SLVETIR-------------------------------------------------- 451 (888)
T ss_pred CCceEEEeccCCceEEEEeehh-hhhhhhh--------------------------------------------------
Confidence 9999999999999999998765 2222222
Q ss_pred cccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcc
Q 001534 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 802 (1058)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~ 802 (1058)
.|.+.|.+++.+||++.+++++.|.+|++|++.
T Consensus 452 -----------------------------------------------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~ 484 (888)
T KOG0306|consen 452 -----------------------------------------------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFK 484 (888)
T ss_pred -----------------------------------------------ccccceeeeeecCCCCceEEecCCcEEEEEeEE
Confidence 177889999999999999999999999999975
Q ss_pred cCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEECCCceEEEEecCCC
Q 001534 803 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP 881 (1058)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~ 881 (1058)
...- ..|.. -++..+... +.+.- ...|.|+.+||||++||++- |++|+||-+++.+..-.+.||.
T Consensus 485 l~~~-~~gt~-----~k~lsl~~~----rtLel----~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHk 550 (888)
T KOG0306|consen 485 LVVS-VPGTQ-----KKVLSLKHT----RTLEL----EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHK 550 (888)
T ss_pred EEec-cCccc-----ceeeeeccc----eEEec----cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccc
Confidence 3221 00100 011111111 11222 77899999999999999998 9999999999999999999999
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 001534 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961 (1058)
Q Consensus 882 ~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~ 961 (1058)
-+|.|+..|| |+++++||+.|.+|++|-++-|.|.+.+-+|.+.|.++.|-|+...+.|+|.|+.|+-||-+.-+
T Consensus 551 LPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe---- 625 (888)
T KOG0306|consen 551 LPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE---- 625 (888)
T ss_pred cceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh----
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999999998866
Q ss_pred eeeecCCCCCCCCCCeeEEEEcCCCcEEEEE-eCCeEEEEeCC
Q 001534 962 RFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSK 1003 (1058)
Q Consensus 962 ~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~-~d~~i~vwd~~ 1003 (1058)
.++...+|. ..|.+++.+|+|.+++++ +|.+|++|.-+
T Consensus 626 -~iq~L~~H~---~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 626 -EIQKLDGHH---SEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred -hheeeccch---heeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 445666776 789999999999999996 99999999984
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-51 Score=395.84 Aligned_cols=367 Identities=20% Similarity=0.303 Sum_probs=305.1
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEE
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd 483 (1058)
+.||.++|.|++|+|+|+.|++|+.|.++|+||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 78999999999999999999999999999999999976655 8889999999999999999 799999999999999
Q ss_pred cCCCcee-EEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecC
Q 001534 484 VVAGRKQ-YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1058)
Q Consensus 484 ~~~~~~~-~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1058)
.++|+++ ..|.+|...|++++|.|-. ..|..+++++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~s-- 224 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSS-- 224 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceeccc--
Confidence 9998876 5899999999999998642 236667788776
Q ss_pred CCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeC
Q 001534 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1058)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1058)
+|+.++|||...+.++..+.+|.. +|+|+.|..+ .++++|+.|++|++|+...|.....+.+|.+ .|+.++.+.
T Consensus 225 --kDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsT 298 (480)
T KOG0271|consen 225 --KDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALST 298 (480)
T ss_pred --CCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccc
Confidence 477899999999999999999998 9999999866 4899999999999999999999999998887 789999886
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccc
Q 001534 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1058)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1058)
|- .|-+|..|.+=+-. ........... ...
T Consensus 299 dy-~LRtgaf~~t~~~~---------~~~se~~~~Al----~rY------------------------------------ 328 (480)
T KOG0271|consen 299 DY-VLRTGAFDHTGRKP---------KSFSEEQKKAL----ERY------------------------------------ 328 (480)
T ss_pred hh-hhhccccccccccC---------CChHHHHHHHH----HHH------------------------------------
Confidence 53 23344443221111 11100000000 000
Q ss_pred cccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcc
Q 001534 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 802 (1058)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~ 802 (1058)
+ .+.-..+..+++++.|.++.+|+-.
T Consensus 329 ----------------------------~--------------------------~~~~~~~erlVSgsDd~tlflW~p~ 354 (480)
T KOG0271|consen 329 ----------------------------E--------------------------AVLKDSGERLVSGSDDFTLFLWNPF 354 (480)
T ss_pred ----------------------------H--------------------------HhhccCcceeEEecCCceEEEeccc
Confidence 0 0001124568999999999999632
Q ss_pred cCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEECCCceEEEEecCCC
Q 001534 803 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP 881 (1058)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~ 881 (1058)
.+.+++. .+.+ | ..-|..+.||||++++|+++ |..|++||-.+|+.+.+|++|-
T Consensus 355 ---------------------~~kkpi~-rmtg--H-q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv 409 (480)
T KOG0271|consen 355 ---------------------KSKKPIT-RMTG--H-QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV 409 (480)
T ss_pred ---------------------ccccchh-hhhc--h-hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc
Confidence 2222322 2445 8 99999999999999999999 9999999999999999999999
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001534 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1058)
Q Consensus 882 ~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd 952 (1058)
..|..++||. |.++|++|+.|.++++||+.+.++...|.||.+.|.++.|||||+.+++|+.|+.+++|.
T Consensus 410 ~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 410 AAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=386.31 Aligned_cols=286 Identities=20% Similarity=0.346 Sum_probs=259.9
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~ 424 (1058)
|.++|.|++|||+|+ .||+|+.|.++++||+.+.....+ .++|...|.|++|+|||+.||
T Consensus 114 H~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcvawsPDgk~iA 173 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVAWSPDGKKIA 173 (480)
T ss_pred CCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEEECCCcchhh
Confidence 899999999999998 689999999999999999776654 789999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEec-----CCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCC
Q 001534 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-----PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1058)
Q Consensus 425 ~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~-----d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~ 499 (1058)
+|+.||+|++||.++|+++.. .+.+|...|++++|-| ..+ +|++++.||+|+|||+..++++..+.+|+.+
T Consensus 174 SG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~lsgHT~~ 249 (480)
T KOG0271|consen 174 SGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRTLSGHTAS 249 (480)
T ss_pred ccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEEeccCccc
Confidence 999999999999999987654 7889999999999976 445 7999999999999999999999999999999
Q ss_pred eEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEc-----------CCCC--------------
Q 001534 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYS-----------ADGT-------------- 554 (1058)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~-------------- 554 (1058)
|+|+.|... .++++||.|++|++|+...+.....+.+|.+.|+.++.+ |.++
T Consensus 250 VTCvrwGG~---gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~ 326 (480)
T KOG0271|consen 250 VTCVRWGGE---GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALE 326 (480)
T ss_pred eEEEEEcCC---ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHH
Confidence 999999743 599999999999999999988899999999999999877 2233
Q ss_pred -----------EEEEEecCCCCCceEEEeeCCC-CceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 001534 555 -----------RLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1058)
Q Consensus 555 -----------~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1058)
.+++++. |.++.+|+... .+++....+|.. .|+.+.|+||++++++++.|..|++||.++|+.
T Consensus 327 rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~ 401 (480)
T KOG0271|consen 327 RYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF 401 (480)
T ss_pred HHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeCCCcch
Confidence 4888874 78899999764 458888999988 899999999999999999999999999999999
Q ss_pred EEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001534 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
+.++.+|- ..|+.++|+.|.++|++|+.|.++++|++.+.
T Consensus 402 lasfRGHv--~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 402 LASFRGHV--AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred hhhhhhcc--ceeEEEEeccCccEEEEcCCCceEEEEEeeee
Confidence 99998764 48999999999999999999999999999876
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=401.73 Aligned_cols=562 Identities=15% Similarity=0.211 Sum_probs=430.2
Q ss_pred cCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEE
Q 001534 356 PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLY 435 (1058)
Q Consensus 356 pdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vw 435 (1058)
..|+ ++| ++..-.|.+||+++|+...... ...-...|+|++-+||.-+||+|..||.|+||
T Consensus 32 ~~Gr-~va-~~a~E~vn~WdlRtge~~~~l~-----------------~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif 92 (888)
T KOG0306|consen 32 GKGR-AVA-VSALEQVNIWDLRTGEIEKKLI-----------------LLKKKAEVTCLRSSDDILLLAVGYADGSVQIF 92 (888)
T ss_pred CCCc-EEE-EeccccEeEEeeecchhhhhhh-----------------hhcccceEEEeeccCCcceEEEEecCceEEee
Confidence 3476 343 3446689999999995543200 12344689999999999999999999999999
Q ss_pred EecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEE
Q 001534 436 TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF 515 (1058)
Q Consensus 436 d~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~ 515 (1058)
+..++.... ++.+|...|+++.|...|. .|++||.|+.|.+||+-...-...+.||...|+..-|.. +..+++
T Consensus 93 ~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~--~~~~lv 165 (888)
T KOG0306|consen 93 SLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN--GDSFLV 165 (888)
T ss_pred ccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC--CCeEEE
Confidence 999875444 7889999999999999999 899999999999999999888999999999999998874 337999
Q ss_pred EEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCC-------c-----eeEee
Q 001534 516 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-------A-----IKRTY 583 (1058)
Q Consensus 516 s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-------~-----~~~~~ 583 (1058)
+.+.|+.|++||+++..+..+...|.+.+..+++.+ +.+++++. ++.+.+|++... . ...++
T Consensus 166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred EeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeecccccccccccceeecccee
Confidence 999999999999999999999999999999999988 67777764 677999998311 0 11112
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEE-------------E-------------------ecCCC
Q 001534 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT-------------V-------------------DADGG 631 (1058)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------~-------------------~~~~~ 631 (1058)
.....+..-.+...++++++++-+.|..+.++.+.+.+.+.. . ..-..
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence 212222333456677888999999999999998875331100 0 00001
Q ss_pred CCCcceEEEeCCCC---EEEEEECCCcEEEEECCCCceee--------ecccCCcccccCCCCCCCCCCCccccccCCCc
Q 001534 632 LPASPRLRFNKEGS---LLAVTTSDNGIKILANSDGVRLL--------RMLEGRAMDKNRCPSEPISSKPLTINALGPAS 700 (1058)
Q Consensus 632 ~~~v~~~~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1058)
...+.++.|.|++. .|+. -.++++..|.++...... -.+.+|...+.
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVR--------------------- 377 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVR--------------------- 377 (888)
T ss_pred hhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhhee---------------------
Confidence 12456777777543 2333 556778888775410100 01112221111
Q ss_pred ccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEE
Q 001534 701 NVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIY 780 (1058)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 780 (1058)
....+.+...+.++..+.+++|+..+.+.. +.+ ..+.+.+..|
T Consensus 378 ----------------------------sl~vS~d~~~~~Sga~~SikiWn~~t~kci---RTi------~~~y~l~~~F 420 (888)
T KOG0306|consen 378 ----------------------------SLCVSSDSILLASGAGESIKIWNRDTLKCI---RTI------TCGYILASKF 420 (888)
T ss_pred ----------------------------EEEeecCceeeeecCCCcEEEEEccCccee---EEe------ccccEEEEEe
Confidence 113455666677777899999998863322 222 3347889999
Q ss_pred ccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe-
Q 001534 781 TNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS- 859 (1058)
Q Consensus 781 s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s- 859 (1058)
-|.++++++|..+|.+.+||+.. ...+.. .. +| .+.|.+++.+||++.+++|+
T Consensus 421 vpgd~~Iv~G~k~Gel~vfdlaS----------------------~~l~Et-i~--AH-dgaIWsi~~~pD~~g~vT~sa 474 (888)
T KOG0306|consen 421 VPGDRYIVLGTKNGELQVFDLAS----------------------ASLVET-IR--AH-DGAIWSISLSPDNKGFVTGSA 474 (888)
T ss_pred cCCCceEEEeccCCceEEEEeeh----------------------hhhhhh-hh--cc-ccceeeeeecCCCCceEEecC
Confidence 99999999999999999987642 222221 22 38 99999999999999999999
Q ss_pred CCeEEEEECCC-----ceEEEEec-------CCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCe
Q 001534 860 GGKVSLFNMMT-----FKVMTMFM-------SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRI 927 (1058)
Q Consensus 860 dg~i~iwd~~~-----~~~~~~~~-------~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v 927 (1058)
|.+|++||..- +...+.+. .-...|.|+.+|| |+++||++--|.+|+||-+++-+..-.+.||.-||
T Consensus 475 DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV 553 (888)
T KOG0306|consen 475 DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPV 553 (888)
T ss_pred CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccce
Confidence 99999999752 22111111 1346799999999 99999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEE-eCCeEEEEeC-CCC
Q 001534 928 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLE 1005 (1058)
Q Consensus 928 ~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~-~d~~i~vwd~-~~~ 1005 (1058)
.|+..|||++.++|||.|+.|+||-++-|+|-+. ..+|. ..|+++.|-|+..+++++ .|+.|+-||- +++
T Consensus 554 ~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS-----~fAHd---DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe 625 (888)
T KOG0306|consen 554 LSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS-----FFAHD---DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE 625 (888)
T ss_pred eEEeccCCcCeEEeccCCCceEEeccccchhhhh-----hhccc---CceeEEEEcccceeEEEecCcceEEeechhhhh
Confidence 9999999999999999999999999999997655 33444 679999999999888885 9999999999 999
Q ss_pred eeeEEee--ccccceEEccCCcEEEEEECCCeEEEEcCCC
Q 001534 1006 CSRSVSF--LSLCPYVFGVSSIFLLSTLTKLSVAVHDPLM 1043 (1058)
Q Consensus 1006 ~~~~~~~--~~~~~~~~s~~~~~l~~~~~d~~v~vw~~~~ 1043 (1058)
++..+.. ..+-+++.+|+|.|+++++.|.++++|.-..
T Consensus 626 ~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 626 EIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9998877 3478899999999999999999999998543
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=375.47 Aligned_cols=544 Identities=16% Similarity=0.242 Sum_probs=362.7
Q ss_pred cchHHHHHHHHHHhhhcCHHHHHHHHHHHhCCCcc--------HHHHH--------------------------HHH--h
Q 001534 3 SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN--------MKHFE--------------------------DQV--Q 46 (1058)
Q Consensus 3 ~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~--------~~~~~--------------------------~~i--~ 46 (1058)
+.+++++|++++||+..||+++.+.|.+|.++... ...+| .++ .
T Consensus 19 ~~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~s~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 98 (707)
T KOG0263|consen 19 SHTRDLNRIVLEYLRKKKYSRTEEMLRQEANLPSRPVNGMPAEPDYDREQFEALPPIGLPKENADDETPQGLSSSAVPVE 98 (707)
T ss_pred cchHHHHHHHHHHHhhhcccccchhhhhhhcccccccCCCccccchhhhhhhccCCccccccccCCcccccccccCchhh
Confidence 45789999999999999999999999999874331 11221 000 0
Q ss_pred cCCHH---------HHHHHhcCCC----ccccccchhhHHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHH
Q 001534 47 AGEWD---------EVERYLCGFT----KVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFK 113 (1058)
Q Consensus 47 ~G~w~---------~~~~~l~~~~----~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~ 113 (1058)
.-.|. .+...|..+- +.-..++. .++|+|+.|.||+|++++..+.|..|+.+.--.+.....+.+.
T Consensus 99 ~~~~~~~~~~~~ye~~y~~lk~~ve~Sldi~k~El~-~iLypifv~~yldl~~~~~~~~a~~Ffe~f~~d~~~~~~e~i~ 177 (707)
T KOG0263|consen 99 KALWSAEEIPDQYEHVYSELKTWVEDSLDIYKAELS-PILYPIFVHSYLDLVQKSAYETAKSFFERFRGDHKVYHSESIF 177 (707)
T ss_pred hccccccCCChhHhhhhhhcchhhhCcchhhhHHHH-HHHHHHHHHHHHHHHHcCcHHHHHHHHHHhccchhhhhhHHHH
Confidence 01111 1111111110 11112333 5999999999999999999999999999865555566778888
Q ss_pred HHHHhhcccCccccchhccCCC-------chhHHHHHHHHHHhhcccCccccccCCCCCCchhHHHHHHHHHHHHHHhhC
Q 001534 114 EITQLLTLDNFRQNEQLSKYGD-------TKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLC 186 (1058)
Q Consensus 114 ~l~~l~~~~~~~~~~~~~~~~~-------~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~ 186 (1058)
+|..+-+...+.+++....+.. .+.+.+.|+..+++ ... +-..-+..+|+|++..++...
T Consensus 178 ~l~~~~~~~~i~~ne~~~~~~~~ky~i~~sr~s~~lL~~~l~~----~~~---------~~g~~i~~ii~~hldi~v~~~ 244 (707)
T KOG0263|consen 178 QLLSLETIKHIKENETARAFRKNKYVIRLSRDSFDLLLRFLQE----DNN---------IGGTIIIKIINQHLDIDVFDG 244 (707)
T ss_pred HHHhhhhHHHHhhhhhHHHHhhCcEEEEecHHHHHHHHHHhhh----hcc---------ccchHHHHHHHHHhCcccccc
Confidence 8888888877777776555544 24445555555544 221 223568889999998888765
Q ss_pred CCCCCCCCcccc-------cccCccCCCCCCCCCCCC-CCCCcccCCCCCCC----CCCCCCCCCCCCCCCCCCcccccc
Q 001534 187 KNPRPNPDIKTL-------FTDHSCNPTSNGARPPPP-TNNPLVGPIPKAGQ----FPPIGAHGPFQPVVSPSPGAIAGW 254 (1058)
Q Consensus 187 ~~~~~~~~~~sl-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~h~~~~~~~~~~~fs~~g~ 254 (1058)
...+.......+ +..+...+ .+ ...+ ++..++... .+.+..-.| .
T Consensus 245 ~~~r~~~~~~~~~g~~~~~i~g~~~~e--------~~~~~~~-l~~~~~e~~~~~~~~~~~e~~D-------------~- 301 (707)
T KOG0263|consen 245 VMARRTTKPTAMVGSEQESIAGEAKRE--------INKQKVQ-LGLLLKEEEIEKKLPILLEVED-------------D- 301 (707)
T ss_pred ccccccccchhhcccccccccccchhh--------cccceee-ecccccchhhhhcccccccCcc-------------c-
Confidence 443221100000 00000000 00 0000 000000000 000000000 0
Q ss_pred ccCCCCCCCCCCccCCCCCCCC-CCcc----cccccCCCCCCCCCcccccCCCch--hhhhhcccCCcceeeecCCCCCc
Q 001534 255 MSSNSPSLPHPSMAAGPPGFVQ-PSSA----VGFLKHPRTPTGMTGMDYQSADSD--HLMKRIRTGQSDEVSFAGVAHTP 327 (1058)
Q Consensus 255 ~~~~~~~~~~~~~~~~~i~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 327 (1058)
...+.-+.+. +... ++-.+.++.|. ....-..|-.+ .... +-.-.+.+..
T Consensus 302 ------------~~~~~~~~~~~~~~~~~~~~~k~~d~~~ps--~d~iPlPp~~~~d~~~~---------~~~l~d~~kr 358 (707)
T KOG0263|consen 302 ------------PNEPDNEKLKKPKKKKLLSEEKKRDPNAPS--RDRIPLPPLKQVDKLAE---------LEALKDEQKR 358 (707)
T ss_pred ------------cccccccccccchhhhhhhhhhccccCCCc--cccCCCCcccchhHHHH---------HHHHHHHHHH
Confidence 0000000000 0000 00000000000 00000000000 0000 0000011122
Q ss_pred ceecCCccccceeEeec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccc--c-Cccee---------ecccc
Q 001534 328 NVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA--H-KPFKV---------WDISA 394 (1058)
Q Consensus 328 ~~~~~~~~~~~~~~~~~-h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~--~-~~~~~---------~~~~~ 394 (1058)
.....+.+|..+++++. ....|+|+.||+|+. ++|.|-.|..|++|.+...+... . ..+.. -++..
T Consensus 359 ~~l~~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D 437 (707)
T KOG0263|consen 359 VKLGRNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLD 437 (707)
T ss_pred hhcCCCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhcc
Confidence 22345667888999998 578999999999998 89999999999999998533111 0 00000 11111
Q ss_pred cccccccccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEc
Q 001534 395 ASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474 (1058)
Q Consensus 395 ~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~ 474 (1058)
.........+.||.++|..+.|+|+.++|++++.|++||+|.+.+..++- .+.||..+|+++.|+|-|- ++||+|
T Consensus 438 ~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas 512 (707)
T KOG0263|consen 438 DDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATAS 512 (707)
T ss_pred ccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecC
Confidence 12223334488999999999999999999999999999999999987665 6779999999999999998 899999
Q ss_pred CCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCC
Q 001534 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1058)
Q Consensus 475 ~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1058)
.|++.++|......+++.+.+|-+.|.|+.|+|+. +++++||.|.++|+||+.++..+..+.+|.++|.+++|||+|+
T Consensus 513 ~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr 590 (707)
T KOG0263|consen 513 HDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR 590 (707)
T ss_pred CCceeeeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc
Confidence 99999999999999999999999999999999765 8999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001534 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1058)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 619 (1058)
+|++++. ++.|.+||+.++.++..+.+|.+ .|.++.|+.+|..|++||.|.+|++||+..
T Consensus 591 ~LaSg~e----d~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 591 YLASGDE----DGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred eEeeccc----CCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999974 88899999999999999999966 999999999999999999999999999864
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=340.17 Aligned_cols=282 Identities=18% Similarity=0.271 Sum_probs=265.3
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCC--CCE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD--GLM 422 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd--~~~ 422 (1058)
.+.+|..+.||+|+. ++|+|+-+|.++||+..+...++. |.+|.+.|.++.|+|. +..
T Consensus 174 d~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~~~ 233 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSDLN 233 (459)
T ss_pred CCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCccc
Confidence 467999999999998 899999999999999999876654 8999999999999996 679
Q ss_pred EEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEE
Q 001534 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1058)
Q Consensus 423 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~ 502 (1058)
+|+|+.||++++|++++...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+....||...|.+
T Consensus 234 lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ 308 (459)
T KOG0272|consen 234 LATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFS 308 (459)
T ss_pred eeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhcccccccce
Confidence 9999999999999999876666 7889999999999999999 8999999999999999999999999999999999
Q ss_pred EEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEe
Q 001534 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1058)
Q Consensus 503 ~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1058)
++|++ ||.++++|+.|..-+|||++++.++..+.+|..+|.+++|+|+|-.+++|+. |++++|||++....+..
T Consensus 309 iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 309 IAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSELYT 382 (459)
T ss_pred eEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeeccccccee
Confidence 99995 5689999999999999999999999999999999999999999999999984 88999999999999999
Q ss_pred ecCCCCCceeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEE
Q 001534 583 YSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1058)
Q Consensus 583 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 660 (1058)
+.+|.+ -|+.++|+| .|.+|++++.|++++||...+..+++.+.+|.. .|.++..++|+.++++++.|+++++|.
T Consensus 383 ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 383 IPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeecc
Confidence 999998 899999998 788999999999999999999999999998866 799999999999999999999999995
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=332.94 Aligned_cols=306 Identities=16% Similarity=0.276 Sum_probs=258.5
Q ss_pred cceeEeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeeccccccccccc-ccccCCCcCeEEEE
Q 001534 337 KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQN-ALLNDAAISVNRCV 415 (1058)
Q Consensus 337 ~~~~~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~ 415 (1058)
...++.+.|..+|.+.+|+|-..-++++|+.|-..++|++.......... ..+. ..... ..-......|++++
T Consensus 169 ~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q---~~lr---h~~~~~~~s~~~nkdVT~L~ 242 (524)
T KOG0273|consen 169 SSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ---LVLR---HCIREGGKSVPSNKDVTSLD 242 (524)
T ss_pred ccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh---hhhh---hhhhhhcccCCccCCcceEE
Confidence 33455566889999999999876689999999999999997511110000 0000 00000 00011345799999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeC
Q 001534 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1058)
Q Consensus 416 ~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~ 495 (1058)
|+.+|..||+|+.||.+++|+..+.. +. ++..|.++|.++.|+.+|. +|++++.|+++.+||..+|...+.+.-
T Consensus 243 Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~f~~ 316 (524)
T KOG0273|consen 243 WNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQFEF 316 (524)
T ss_pred ecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEeeee
Confidence 99999999999999999999987632 33 7778999999999999999 899999999999999999999999999
Q ss_pred CCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCC
Q 001534 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1058)
Q Consensus 496 ~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1058)
|..+-..+.|-.+ ..+++++.|+.|+++.+....+..++.+|.+.|.++.|.|.|.+|++++. |+++++|+..
T Consensus 317 ~s~~~lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~TlkiWs~~ 389 (524)
T KOG0273|consen 317 HSAPALDVDWQSN---DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKIWSMG 389 (524)
T ss_pred ccCCccceEEecC---ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEeeecC
Confidence 9988777888633 68999999999999999999999999999999999999999999999984 8999999999
Q ss_pred CCceeEeecCCCCCceeEEEEcCCC---------CEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCE
Q 001534 576 EGAIKRTYSGFRKRSLGVVQFDTTR---------NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1058)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 646 (1058)
.+.....+.+|.. .|..+.|+|.| ..+++++.|++|++||+..+.++..+..|.. +|.+++|+|+|++
T Consensus 390 ~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~--pVysvafS~~g~y 466 (524)
T KOG0273|consen 390 QSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE--PVYSVAFSPNGRY 466 (524)
T ss_pred CCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC--ceEEEEecCCCcE
Confidence 9999999999988 79999999975 4688999999999999999999999876654 8999999999999
Q ss_pred EEEEECCCcEEEEECCCC
Q 001534 647 LAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 647 l~~~~~dg~i~iw~~~~~ 664 (1058)
+|+|+.||.|.+|+..++
T Consensus 467 lAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 467 LASGSLDGCVHIWSTKTG 484 (524)
T ss_pred EEecCCCCeeEeccccch
Confidence 999999999999999887
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=329.87 Aligned_cols=475 Identities=15% Similarity=0.263 Sum_probs=357.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~ 424 (1058)
+++.|.++.|+|..+. +.++-.+|.|.|||.++...+.+ +.-..-+|.+..|-+-.++++
T Consensus 12 rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 6789999999999984 55677899999999999887764 333567899999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCC-ceeEEeeCCCCCeEEE
Q 001534 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSV 503 (1058)
Q Consensus 425 ~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~-~~~~~l~~~~~~v~~~ 503 (1058)
+|+.|..|+||+..+++.+. .+.+|...|++++.+|... +++|+|.|-+|++||++.+ .+.++|.||+..|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998776 8889999999999999998 8999999999999999875 6788999999999999
Q ss_pred EecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCC--CEEEEEecCCCCCceEEEeeCCCCceeE
Q 001534 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG--TRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1058)
Q Consensus 504 ~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1058)
+|+|.. .+.+++++-|++|++|.+....+.+++++|...|+++.+-+-| .+|++++. |..+++||.++..+++
T Consensus 147 ~fnPkD-~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPKD-PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCCC-ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHH
Confidence 999964 4899999999999999999999999999999999999998754 68999874 8899999999999999
Q ss_pred eecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEEC
Q 001534 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1058)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 661 (1058)
++.||.. .|+.++|+|.-..+++|++||+++||+..+.++..++..... .+.+++-.+.+..+++|.+.|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle--RvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE--RVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc--eEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 899999999999999999999999999999888887765543 7899999998888999998887755 22
Q ss_pred CCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccc
Q 001534 662 SDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA 741 (1058)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1058)
......+ .+ .+.|
T Consensus 298 greeP~v-sM-------------------------------------------------------------d~~g----- 310 (794)
T KOG0276|consen 298 GREEPAV-SM-------------------------------------------------------------DSNG----- 310 (794)
T ss_pred cCCCCce-ee-------------------------------------------------------------cCCc-----
Confidence 2110000 00 0000
Q ss_pred cccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCccccccccccc
Q 001534 742 EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLW 821 (1058)
Q Consensus 742 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 821 (1058)
-.+|... +.|..+. +-+.+.++
T Consensus 311 -----KIiwa~~-------------------~ei~~~~-------~ks~~~~~--------------------------- 332 (794)
T KOG0276|consen 311 -----KIIWAVH-------------------SEIQAVN-------LKSVGAQK--------------------------- 332 (794)
T ss_pred -----cEEEEcC-------------------ceeeeee-------ceeccCcc---------------------------
Confidence 0112111 0111110 00000000
Q ss_pred CCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEeCCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEe
Q 001534 822 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM 901 (1058)
Q Consensus 822 ~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~ 901 (1058)
++..|+.+.-..+..+...-....++.||+|+++++++||...||..-..+ ..+.+.-....|++ |....|+-.
T Consensus 333 ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avRe 406 (794)
T KOG0276|consen 333 EVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVRE 406 (794)
T ss_pred cccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEEe
Confidence 111222111111110000222346888999999999999999999754322 12345667788999 777888888
Q ss_pred CCCeEEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEE
Q 001534 902 EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQ 981 (1058)
Q Consensus 902 ~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 981 (1058)
.++.|+++ ++.+..+.++..-. +..+ -.|.+|...+ ++.+++||.++++.+... ... ...+.
T Consensus 407 s~~~vki~--knfke~ksi~~~~~---~e~i-~gg~Llg~~s-s~~~~fydW~~~~lVrrI--~v~---------~k~v~ 468 (794)
T KOG0276|consen 407 SNGNVKIF--KNFKEHKSIRPDMS---AEGI-FGGPLLGVRS-SDFLCFYDWESGELVRRI--EVT---------SKHVY 468 (794)
T ss_pred cCCceEEE--ecceeccccccccc---eeee-cCCceEEEEe-CCeEEEEEcccceEEEEE--eec---------cceeE
Confidence 89999998 66666666543221 1122 2355555555 556999999998865432 211 36799
Q ss_pred EcCCCcEEEEEeCCeEEEEeC
Q 001534 982 FHNDQTHLLVVHESQISVYDS 1002 (1058)
Q Consensus 982 fs~d~~~l~~~~d~~i~vwd~ 1002 (1058)
|+.+|.+++.+.|...+++.+
T Consensus 469 w~d~g~lVai~~d~Sfyil~~ 489 (794)
T KOG0276|consen 469 WSDNGELVAIAGDDSFYILKF 489 (794)
T ss_pred EecCCCEEEEEecCceeEEEe
Confidence 999999999987777666665
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=334.88 Aligned_cols=500 Identities=14% Similarity=0.203 Sum_probs=358.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEe--CCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~ 422 (1058)
+..+++|++||++|+ ++|+|- ..-.++||++.....+.. +..|+..|+|++|+|.++|
T Consensus 77 sRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence 556999999999998 788884 556899999998776654 6789999999999999999
Q ss_pred EEEEeC--CCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEE--------
Q 001534 423 LGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-------- 492 (1058)
Q Consensus 423 l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~-------- 492 (1058)
+++.+. |-.|.+||++...... -+.-...|..++|+.||. +++|.+ ...|++|.++.++....
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence 998754 5568889887643222 122456799999999999 788887 67999999876652110
Q ss_pred -----ee------------------------CC-----------------CCCeEEEEecccCCccEEEEEeCCCeEEEE
Q 001534 493 -----FE------------------------GH-----------------EAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (1058)
Q Consensus 493 -----l~------------------------~~-----------------~~~v~~~~~~~~~~~~~l~s~s~d~~i~~w 526 (1058)
++ || +..-+|++.+ ..+|++|+.+|.|++|
T Consensus 210 ~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs----~r~I~cgCa~g~vrlF 285 (1080)
T KOG1408|consen 210 YFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS----SRLIACGCAKGMVRLF 285 (1080)
T ss_pred hhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee----cceEEEeeccceeeec
Confidence 00 00 1112334433 2699999999999999
Q ss_pred eCCCCCceEEecC--------------------C----CCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCcee--
Q 001534 527 LYDYLGSRVDYDA--------------------P----GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK-- 580 (1058)
Q Consensus 527 d~~~~~~~~~~~~--------------------~----~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~-- 580 (1058)
+..+....-++.. . -....++.|++....+.+.. +|..+++||++.-..+
T Consensus 286 np~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVY----ndhSlYvWDvrD~~kvgk 361 (1080)
T KOG1408|consen 286 NPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVY----NDHSLYVWDVRDVNKVGK 361 (1080)
T ss_pred CcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEE----cCceEEEEeccccccccc
Confidence 8765432222110 0 01345778998888888776 4888999999864422
Q ss_pred -EeecCCCCCceeEEEEcCC-----------CCEEEEEeCCCeEEEEECCCCceEEEE----------------------
Q 001534 581 -RTYSGFRKRSLGVVQFDTT-----------RNRFLAAGDEFQIKFWDMDNMNMLTTV---------------------- 626 (1058)
Q Consensus 581 -~~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~---------------------- 626 (1058)
..+-.|.. .|..+.--|. ..-+++++.|++|++||+..+..-..+
T Consensus 362 ~~s~lyHS~-ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~ 440 (1080)
T KOG1408|consen 362 CSSMLYHSA-CIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIM 440 (1080)
T ss_pred eeeeeeccc-eeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhh
Confidence 22333333 3333322220 134889999999999999863211000
Q ss_pred -------------ecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccc
Q 001534 627 -------------DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTI 693 (1058)
Q Consensus 627 -------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1058)
..-+....+.+++.+|+|++||+|...|++++|++..- +....++.|..++......-
T Consensus 441 ~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l-~~~~~~eAHesEilcLeyS~-------- 511 (1080)
T KOG1408|consen 441 HDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL-EYTCFMEAHESEILCLEYSF-------- 511 (1080)
T ss_pred hhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh-hhhhheecccceeEEEeecC--------
Confidence 00011235789999999999999999999999999877 56667777776654321110
Q ss_pred cccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCcccc-ccccccccccccCCcCCccceeEEecCCCcCc
Q 001534 694 NALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV-AEDVDKIKSWRIPDISDPSQIKALRLPDSIAA 772 (1058)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 772 (1058)
| ....++++ ++.|+-|.++|+....... + .+ .+|.
T Consensus 512 ------------------------p--------------~~~~kLLASasrdRlIHV~Dv~rny~l~--q--tl--d~HS 547 (1080)
T KOG1408|consen 512 ------------------------P--------------VLTNKLLASASRDRLIHVYDVKRNYDLV--Q--TL--DGHS 547 (1080)
T ss_pred ------------------------c--------------hhhhHhhhhccCCceEEEEecccccchh--h--hh--cccc
Confidence 0 00112333 3446889999987432211 1 12 3489
Q ss_pred CceEEEEEccCC--ceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEcc
Q 001534 773 SKVVRLIYTNSG--LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1058)
Q Consensus 773 ~~i~~l~~s~~g--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1058)
..|+++.|...| ..+++++.|..|.+- ... . ..+|.+........ . ...++.++..|
T Consensus 548 ssITsvKFa~~gln~~MiscGADksimFr-~~q--k----------------~~~g~~f~r~t~t~-~-ktTlYDm~Vdp 606 (1080)
T KOG1408|consen 548 SSITSVKFACNGLNRKMISCGADKSIMFR-VNQ--K----------------ASSGRLFPRHTQTL-S-KTTLYDMAVDP 606 (1080)
T ss_pred cceeEEEEeecCCceEEEeccCchhhhee-hhc--c----------------ccCceecccccccc-c-cceEEEeeeCC
Confidence 999999999888 789999999877642 111 0 11122211111000 1 57789999999
Q ss_pred CCcEEEEEe-CCeEEEEECCCceEEEEecC---CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCC
Q 001534 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR 926 (1058)
Q Consensus 851 d~~~la~~s-dg~i~iwd~~~~~~~~~~~~---~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~ 926 (1058)
..++++++. |..|+|||+++++..+.|++ |.+....+...| .|.+||+.+.|+++.++|..+|+++....||...
T Consensus 607 ~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~ 685 (1080)
T KOG1408|consen 607 TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA 685 (1080)
T ss_pred CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchh
Confidence 999999999 99999999999999999986 567788899999 9999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001534 927 ITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1058)
Q Consensus 927 v~~l~~spd~~~l~s~s~D~~i~iwd~~~ 955 (1058)
|+.+.|++|-+.|++++.||.|.||.+..
T Consensus 686 VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 686 VTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeeeeecccchhheeecCCceEEEEECch
Confidence 99999999999999999999999999864
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=331.16 Aligned_cols=285 Identities=20% Similarity=0.316 Sum_probs=261.4
Q ss_pred CCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001534 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1058)
Q Consensus 406 ~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~ 485 (1058)
+.+.+|..+.||+|++.||||+.+|.++||+..+...+. +|.+|...|.++.|+|..+...++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 467789999999999999999999999999999886555 88999999999999998422279999999999999999
Q ss_pred CCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001534 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1058)
Q Consensus 486 ~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1058)
+..++..+.+|...|..++|+|+ |++|++++.|.+-++||+++........+|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPs--G~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPS--GKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecCC--CceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 99999999999999999999964 589999999999999999999999999999999999999999999999985
Q ss_pred CceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeC-CC
Q 001534 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EG 644 (1058)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~ 644 (1058)
|..-++||+++|.++..+.+|.. .|..++|+|+|..+++|+.|++++|||++..+.+.+++.|.. -|+.+.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEecccCC
Confidence 77789999999999999999988 899999999999999999999999999999999999988766 699999999 88
Q ss_pred CEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccc
Q 001534 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 724 (1058)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1058)
.+|++++.|++++||...+. .+++.+.|
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksLaG--------------------------------------------------- 428 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSLAG--------------------------------------------------- 428 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhhcC---------------------------------------------------
Confidence 99999999999999988776 44444433
Q ss_pred cCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEE
Q 001534 725 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWK 800 (1058)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~ 800 (1058)
|.++|.++.+++++..+++++.|.++++|.
T Consensus 429 ----------------------------------------------He~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 429 ----------------------------------------------HEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ----------------------------------------------CccceEEEEeccCCceEEEeccCceeeecc
Confidence 778899999999999999999999999994
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=329.43 Aligned_cols=589 Identities=15% Similarity=0.200 Sum_probs=400.9
Q ss_pred CcceecCCccccceeEeec-CCCCeeEEEEecCCCe--EEEEEeCCCcEEEEEccCccccccCcceeecccccccccccc
Q 001534 326 TPNVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQT--ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1058)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~-h~~~V~~~~fspdg~~--lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1058)
..++..+|........++. |..+|+|+.|-|+.+. .+++|+.||.|.+|.++....... .
T Consensus 33 ~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i-----------------~ 95 (764)
T KOG1063|consen 33 GPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKI-----------------Y 95 (764)
T ss_pred CceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEE-----------------E
Confidence 3444455555556667777 9999999999998851 478899999999999994333221 1
Q ss_pred cccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeec--CcCCeEEEEEecCCCceEEEEEcCCCcEE
Q 001534 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1058)
Q Consensus 403 ~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~--h~~~v~~~~fs~d~~~~~l~s~~~d~~v~ 480 (1058)
.+.+|...+. +++.......+...|+.+.+||.+..+ +.....+.- ...-..|+++.++.+.++++.|+.+..|.
T Consensus 96 ~~~g~~~~~~--cv~a~~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~ 172 (764)
T KOG1063|consen 96 TIQGHCKECV--CVVARSSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVD 172 (764)
T ss_pred eecCcceeEE--EEEeeeeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEE
Confidence 1445555444 444433334344789999999996544 111111211 12234677788866666788888888888
Q ss_pred EEEcCCC--ceeEEeeCCCCCeEEEEecccCC-ccEEEEEeCCCeEEEEeCCCCC-----------------ceE-----
Q 001534 481 VWDVVAG--RKQYTFEGHEAPVYSVCPHHKES-IQFIFSTAIDGKIKAWLYDYLG-----------------SRV----- 535 (1058)
Q Consensus 481 vwd~~~~--~~~~~l~~~~~~v~~~~~~~~~~-~~~l~s~s~d~~i~~wd~~~~~-----------------~~~----- 535 (1058)
++.-.+. +.+..+.||.+.|.+++|..... .-+++++|.|..||+|.+.... ..+
T Consensus 173 ~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~ 252 (764)
T KOG1063|consen 173 LYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEE 252 (764)
T ss_pred EeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeee
Confidence 8865443 45678999999999999976544 4688999999999999765332 000
Q ss_pred ---------EecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCC--ceeEeec----CCCCCceeEEEEcCCC
Q 001534 536 ---------DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYS----GFRKRSLGVVQFDTTR 600 (1058)
Q Consensus 536 ---------~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~----~~~~~~v~~~~~~~~~ 600 (1058)
.+.+|...|+++.|+|.+..|++++. |.++.+|...+. --+.... ++........-|+|++
T Consensus 253 i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~ 328 (764)
T KOG1063|consen 253 IQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS 328 (764)
T ss_pred EEEEEehhhhhcCcccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC
Confidence 13478899999999999988888875 778999987654 2222111 1222357778899999
Q ss_pred CEEEEEeCCCeEEEEECCC-CceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCccccc
Q 001534 601 NRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1058)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 679 (1058)
+.+++-+..|..++|.... ..-....-..+|...|..++|+|.|.+|.+.+.|.+-|+|-.-..+.....+..
T Consensus 329 ~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaR------ 402 (764)
T KOG1063|consen 329 NVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIAR------ 402 (764)
T ss_pred CEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecc------
Confidence 9999999999999998332 222333334456678999999999999999999999999865421111111100
Q ss_pred CCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCcc
Q 001534 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1058)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~ 759 (1058)
T Consensus 403 -------------------------------------------------------------------------------- 402 (764)
T KOG1063|consen 403 -------------------------------------------------------------------------------- 402 (764)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccC----------------CCCCCCccccc--------
Q 001534 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT----------------ERNPSGKATAN-------- 815 (1058)
Q Consensus 760 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~----------------~~~~~~~~~~~-------- 815 (1058)
| +.|...++|++|-+....++++.....+++|+.+.. ...|++.....
T Consensus 403 -------P-QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~ 474 (764)
T KOG1063|consen 403 -------P-QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAF 474 (764)
T ss_pred -------c-ccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCC
Confidence 0 115556666666665555666666666666666543 01111110000
Q ss_pred ---------------------ccccccCCCCCC-cc-------ccccCCCCCCCCCeeEEEEccCCcEEEEEe-C-----
Q 001534 816 ---------------------VAPQLWQPPSGT-LM-------TNDINESKPTEESAACIALSKNDSYVMSAS-G----- 860 (1058)
Q Consensus 816 ---------------------~~~~~~~~~~~~-~~-------~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-d----- 860 (1058)
....+..+.... +. ...+.| | ...|++++.||+|+++|++. .
T Consensus 475 ~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYG--H-GyEv~~l~~s~~gnliASaCKS~~~eh 551 (764)
T KOG1063|consen 475 FPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYG--H-GYEVYALAISPTGNLIASACKSSLKEH 551 (764)
T ss_pred cccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhcc--C-ceeEEEEEecCCCCEEeehhhhCCccc
Confidence 000011111110 00 011333 8 89999999999999999985 2
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccce----eEEEEeCCCCCeEEEEEcCCC
Q 001534 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE----VKTKLKGHQNRITGLAFSPTL 936 (1058)
Q Consensus 861 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~----~~~~l~~h~~~v~~l~~spd~ 936 (1058)
..|++|+..+......+.+|.-.|+.++||| |+++|++.+.|.++.+|...... ....++.|+.-|.+..|+||+
T Consensus 552 AvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde 630 (764)
T KOG1063|consen 552 AVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE 630 (764)
T ss_pred eEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc
Confidence 3499999999999999999999999999999 99999999999999999876432 123478899999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCC--ccccceeeecCCCCCCCCCCeeEEEEcCCC----c-EEEEE-eCCeEEEEeCC-CCee
Q 001534 937 NALVSSGADAQLCMWSIDKW--EKLKSRFIQAPAGRQSPLVGETKVQFHNDQ----T-HLLVV-HESQISVYDSK-LECS 1007 (1058)
Q Consensus 937 ~~l~s~s~D~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~----~-~l~~~-~d~~i~vwd~~-~~~~ 1007 (1058)
+++||+|.|.+|++|..... +..... ... ....+|+.++|.|-. . .+++| ..|.|.+|... ....
T Consensus 631 ~~FaTaSRDK~VkVW~~~~~~d~~i~~~--a~~----~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~ 704 (764)
T KOG1063|consen 631 KYFATASRDKKVKVWEEPDLRDKYISRF--ACL----KFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQ 704 (764)
T ss_pred ceeEEecCCceEEEEeccCchhhhhhhh--chh----ccCCceeeEEeeccccccccceEEEEecccEEEEEeccccccc
Confidence 99999999999999999887 333221 111 122568999987732 2 56668 89999999962 1111
Q ss_pred eE---Eee-----------ccccceEEccC----------CcEEEEEECCCeEEEEcCC
Q 001534 1008 RS---VSF-----------LSLCPYVFGVS----------SIFLLSTLTKLSVAVHDPL 1042 (1058)
Q Consensus 1008 ~~---~~~-----------~~~~~~~~s~~----------~~~l~~~~~d~~v~vw~~~ 1042 (1058)
.. +.. ..+..++|.|. ...|++++.|.++++++..
T Consensus 705 ~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 705 VTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 11 100 22778888753 3446999999999999853
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=335.47 Aligned_cols=586 Identities=13% Similarity=0.147 Sum_probs=404.7
Q ss_pred eEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEe--
Q 001534 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF-- 427 (1058)
Q Consensus 350 ~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~-- 427 (1058)
..++-+|... ++|. -....|.+||......- .++..|..+++|++||++|+|+|+|-
T Consensus 41 ~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~-------------------hlvnssRk~~t~vAfS~~GryvatGEcG 99 (1080)
T KOG1408|consen 41 NGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQS-------------------HLVNSSRKPLTCVAFSQNGRYVATGECG 99 (1080)
T ss_pred Cccccccccc-ceee-ccCcEEEEEcccccchh-------------------heecccCcceeEEEEcCCCcEEEecccC
Confidence 3455566554 3332 23568889998865433 23566888999999999999999984
Q ss_pred CCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcC--CCcEEEEEcCCCceeEEeeCCCCCeEEEEe
Q 001534 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1058)
Q Consensus 428 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~--d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~ 505 (1058)
....++||++.....+. ++..|+-.|+|++|+|.++ ++++.+. |-.|.+||++.......- .-...|.+++|
T Consensus 100 ~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~f 173 (1080)
T KOG1408|consen 100 RTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVAF 173 (1080)
T ss_pred CCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEEEE
Confidence 67789999999877665 7889999999999999999 6776654 557788988755433222 23567888898
Q ss_pred cccCCccEEEEEeCCCeEEEEeCCCCCceE---EecCCCC--------cEEEEEE----cCCCCEEEEEecCCCCCceEE
Q 001534 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGN--------WCTMMAY----SADGTRLFSCGTSKEGESHLV 570 (1058)
Q Consensus 506 ~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~---~~~~~~~--------~v~~~~~----s~~~~~l~~~~~~~~~~~~i~ 570 (1058)
+ ++|.|+++.+ ...|++|.++...... .+.+... ....++. ..+..+.++. .|.+.
T Consensus 174 s--EdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhLv 244 (1080)
T KOG1408|consen 174 S--EDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHLV 244 (1080)
T ss_pred c--cCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------cccee
Confidence 8 6678888876 6789999988755211 1111111 0111110 0111222221 22233
Q ss_pred EeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecC---------------------
Q 001534 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD--------------------- 629 (1058)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------------- 629 (1058)
-|.- .+++..+..-.....+|++.+ .+++++|+.+|.|++|+..+...+.+++..
T Consensus 245 EFSs--RRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~ 320 (1080)
T KOG1408|consen 245 EFSS--RRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESS 320 (1080)
T ss_pred eech--hhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccC
Confidence 3321 222222211111134567665 578999999999999998876655444321
Q ss_pred -CCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceee--ecccCCcccccCCCCCCCCCCCccccccCCCccccccc
Q 001534 630 -GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL--RMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAI 706 (1058)
Q Consensus 630 -~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1058)
.......++.|++....|.+...|..+++||+..-.+.- ..+-.|...+..+...+.
T Consensus 321 ~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~-------------------- 380 (1080)
T KOG1408|consen 321 PAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPC-------------------- 380 (1080)
T ss_pred cccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccc--------------------
Confidence 111223467899999999999999999999997653322 122233333332211110
Q ss_pred CCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEe---------------------
Q 001534 707 APTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR--------------------- 765 (1058)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~--------------------- 765 (1058)
-.........|.+-++++..|++||+|++.........+.-.
T Consensus 381 -----------------nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~ 443 (1080)
T KOG1408|consen 381 -----------------NVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDA 443 (1080)
T ss_pred -----------------cccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhc
Confidence 111334456778888999999999999998632222211100
Q ss_pred ---------cCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCC
Q 001534 766 ---------LPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINES 836 (1058)
Q Consensus 766 ---------~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (1058)
.........+.++++||+|+.|++|...|.+++|++..-.. ...-.
T Consensus 444 ~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-------------------------~~~~e 498 (1080)
T KOG1408|consen 444 SAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-------------------------TCFME 498 (1080)
T ss_pred cCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh-------------------------hhhee
Confidence 00022456789999999999999999999999998763111 01123
Q ss_pred CCCCCCeeEEEEcc---CCcEEEEEe-CCeEEEEECCC-ceEEEEecCCCCCeEEEEEeCCCC--CEEEEEeCCCeEEEE
Q 001534 837 KPTEESAACIALSK---NDSYVMSAS-GGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQDN--NIIAIGMEDSSVQIY 909 (1058)
Q Consensus 837 ~h~~~~i~~~~~s~---d~~~la~~s-dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~--~~lasg~~dg~I~iw 909 (1058)
+| +..|.|+.||. ..++||+++ |.-|.|||+.. ..++.++.+|...|+++.|.. +| ..+++++.|+.|.+-
T Consensus 499 AH-esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~MiscGADksimFr 576 (1080)
T KOG1408|consen 499 AH-ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFR 576 (1080)
T ss_pred cc-cceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEeccCchhhhee
Confidence 48 99999999986 467999999 88899999974 567888999999999999987 54 678888999877654
Q ss_pred EcccceeEEEEeCC-----CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcC
Q 001534 910 NVRVDEVKTKLKGH-----QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 984 (1058)
Q Consensus 910 d~~~~~~~~~l~~h-----~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~ 984 (1058)
-.....-...+..| ...+..++.-|..+++++++.|+.|+||++++|+..+. +.|...+.+....+...|
T Consensus 577 ~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~-----FKgs~~~eG~lIKv~lDP 651 (1080)
T KOG1408|consen 577 VNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS-----FKGSRDHEGDLIKVILDP 651 (1080)
T ss_pred hhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee-----ecccccCCCceEEEEECC
Confidence 33211111122222 34588999999999999999999999999999986543 333333336678999999
Q ss_pred CCcEEEEE-eCCeEEEEeC-CCCeeeEEeecc--ccceEEccCCcEEEEEECCCeEEEEcCCCC
Q 001534 985 DQTHLLVV-HESQISVYDS-KLECSRSVSFLS--LCPYVFGVSSIFLLSTLTKLSVAVHDPLMK 1044 (1058)
Q Consensus 985 d~~~l~~~-~d~~i~vwd~-~~~~~~~~~~~~--~~~~~~s~~~~~l~~~~~d~~v~vw~~~~~ 1044 (1058)
.|.||+++ .|.++.++|. +++|+.+...++ ++.+.|.+|-+.|++++.|+.|+||.+-..
T Consensus 652 SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 652 SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 99999997 9999999999 999999988755 999999999999999999999999986554
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=332.52 Aligned_cols=585 Identities=14% Similarity=0.190 Sum_probs=413.7
Q ss_pred ecCCCCCcceecCCccccceeEee-cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccc
Q 001534 320 FAGVAHTPNVYSQDDLTKTVVRTL-NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMP 398 (1058)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 398 (1058)
..+.|+...+|....+. ++..- .+.+.|+|++=+.+-- ++|. ...|.+|.-. +.+.
T Consensus 51 tt~vgksfqvYd~~kl~--ll~vs~~lp~~I~alas~~~~v-y~A~---g~~i~~~~rg--k~i~--------------- 107 (910)
T KOG1539|consen 51 TTCVGKSFQVYDVNKLN--LLFVSKPLPDKITALASDKDYV-YVAS---GNKIYAYARG--KHIR--------------- 107 (910)
T ss_pred EEecCceEEEEeccceE--EEEecCCCCCceEEEEecCceE-EEec---CcEEEEEEcc--ceEE---------------
Confidence 44456666555544432 22222 3788999999877642 3333 3466666432 2221
Q ss_pred cccccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCC-Cceee-eeeeecCcCCeEEEEEecCCCceEEEEEcCC
Q 001534 399 LQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT-GELRQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1058)
Q Consensus 399 ~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~-~~~~~-~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d 476 (1058)
..+.+|.+.|.-+. |=|.+++++..++.+.||+..++ +.... ...++.....|+++. +|.---.-++.|+.+
T Consensus 108 ---~~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~ 181 (910)
T KOG1539|consen 108 ---HTTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQ 181 (910)
T ss_pred ---EEeccccceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecC
Confidence 11455766666554 46889999999999999999884 22111 111222222376654 454321158889999
Q ss_pred CcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEE
Q 001534 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1058)
Q Consensus 477 ~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1058)
|.+++|++++++.+++++++...|+++.-+|-- +.++.|..+|+|.+++++..+.+..+....+.|++++|..||+.+
T Consensus 182 G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~ 259 (910)
T KOG1539|consen 182 GRLQLWNVRTGKVVYTFQEFFSRITAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPL 259 (910)
T ss_pred CcEEEEEeccCcEEEEecccccceeEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCee
Confidence 999999999999999999999999999877654 699999999999999999999999999888999999999999998
Q ss_pred EEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCce--EEEEecCCCCCC
Q 001534 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDADGGLPA 634 (1058)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~ 634 (1058)
++.+. ..|.+.+||+...+.+......+.+.+....|.|....+++++.|+.+++|=.+++.- -..-...+|..+
T Consensus 260 las~~---~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~P 336 (910)
T KOG1539|consen 260 LASGR---SNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAP 336 (910)
T ss_pred EEecc---CCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCC
Confidence 87764 4678999999988888877744444888999999999999999999988885554332 222222344557
Q ss_pred cceEEEe-CCCCEEEEEECCCcEEEEECCCCceeeecc-cCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCC
Q 001534 635 SPRLRFN-KEGSLLAVTTSDNGIKILANSDGVRLLRML-EGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLER 712 (1058)
Q Consensus 635 v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1058)
..++.|. .+|..+.+++.|++++.+++..... -+.+ ..|... .. .+..... .
T Consensus 337 p~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~-~~~l~~~~~~~--~~---------kk~~~~~------------~-- 390 (910)
T KOG1539|consen 337 PSCIRFYGSQGHFILSAKQDRTLRSFSVISESQ-SQELGQLHNKK--RA---------KKVNVFS------------T-- 390 (910)
T ss_pred chheeeeccCcEEEEecccCcchhhhhhhHHHH-hHhhccccccc--cc---------ccccccc------------h--
Confidence 8899998 5899999999999999988754311 1111 011000 00 0000000 0
Q ss_pred CCCCCCCccccccCCCCCccccCCcccccc-ccccccccccCCcCCccceeEEec-CCCcCcCceEEEEEccCCceEEEe
Q 001534 713 PDRGPPAVSISSLGTIDGSRLVDVKPRVAE-DVDKIKSWRIPDISDPSQIKALRL-PDSIAASKVVRLIYTNSGLSLLAL 790 (1058)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~w~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~s~~g~~l~~~ 790 (1058)
.....++...++...+.-......+++. ++...+.|+..+...+... +.- +-+.....+++++.++.|++.+.|
T Consensus 391 --~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~--L~~~~~~~~~~~~~av~vs~CGNF~~IG 466 (910)
T KOG1539|consen 391 --EKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHV--LDPKRFKKDDINATAVCVSFCGNFVFIG 466 (910)
T ss_pred --hhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEE--ecCccccccCcceEEEEEeccCceEEEe
Confidence 0000011111111111111222233333 3477888988764332211 110 001244678999999999999999
Q ss_pred eccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEECC
Q 001534 791 ASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMM 869 (1058)
Q Consensus 791 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~ 869 (1058)
.+.|.|.+|+++ +|...........| .++|+.++...-++.+++++ +|.++.||..
T Consensus 467 ~S~G~Id~fNmQ----------------------SGi~r~sf~~~~ah-~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~ 523 (910)
T KOG1539|consen 467 YSKGTIDRFNMQ----------------------SGIHRKSFGDSPAH-KGEVTGLAVDGTNRLLVSAGADGILKFWDFK 523 (910)
T ss_pred ccCCeEEEEEcc----------------------cCeeecccccCccc-cCceeEEEecCCCceEEEccCcceEEEEecC
Confidence 999999998765 33333332233448 99999999999899899888 9999999999
Q ss_pred CceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 001534 870 TFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLC 949 (1058)
Q Consensus 870 ~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~ 949 (1058)
+..++..++ -...++++.++. ...++|.+.+|-.|+++|+.+.+.++.+.||.+.|++++|||||++|++++.|++|+
T Consensus 524 ~k~l~~~l~-l~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr 601 (910)
T KOG1539|consen 524 KKVLKKSLR-LGSSITGIVYHR-VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIR 601 (910)
T ss_pred Ccceeeeec-cCCCcceeeeee-hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEE
Confidence 888777776 456788899988 788999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEE-eC-CeEEEEeC
Q 001534 950 MWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HE-SQISVYDS 1002 (1058)
Q Consensus 950 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~-~d-~~i~vwd~ 1002 (1058)
+||+.++.++....+. .+.+++.|||+|.+||+. .| ..|++|--
T Consensus 602 ~wDlpt~~lID~~~vd---------~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 602 TWDLPTGTLIDGLLVD---------SPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred EEeccCcceeeeEecC---------CcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 9999998866443222 446999999999999997 45 56999986
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=299.17 Aligned_cols=296 Identities=22% Similarity=0.322 Sum_probs=253.3
Q ss_pred eEeec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC
Q 001534 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1058)
Q Consensus 340 ~~~~~-h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 418 (1058)
..+++ |++.|+.++..+.+..++++++.|..+.+|++.......- .+...++||+..|..++.++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G--------------~~~r~~~GHsH~v~dv~~s~ 73 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG--------------VPVRRLTGHSHFVSDVVLSS 73 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC--------------ceeeeeeccceEecceEEcc
Confidence 44555 9999999999999888999999999999999987633221 11223789999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCC--
Q 001534 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-- 496 (1058)
Q Consensus 419 d~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~-- 496 (1058)
||++.++++.|+++++||+.+++..+ .|.+|...|.+++|++|+. .+++|+.|++|++||+.. .+..++..+
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g-~ck~t~~~~~~ 147 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLG-VCKYTIHEDSH 147 (315)
T ss_pred CCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecc-cEEEEEecCCC
Confidence 99999999999999999999986655 7889999999999999999 699999999999999654 455555443
Q ss_pred CCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCC
Q 001534 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1058)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1058)
.+.|.|++|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+ +++.+.+||++.
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg----kdg~~~LwdL~~ 223 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG----KDGEAMLWDLNE 223 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC----CCceEEEEEccC
Confidence 7899999999998789999999999999999999999999999999999999999999999987 588999999999
Q ss_pred CceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCC-------CCCCcceEEEeCCCCEEEE
Q 001534 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-------GLPASPRLRFNKEGSLLAV 649 (1058)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~ 649 (1058)
++.+..+.... .|++++|+|+...|+. ..+..|+|||++++..+..+.... ......+++|++||..|++
T Consensus 224 ~k~lysl~a~~--~v~sl~fspnrywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~ 300 (315)
T KOG0279|consen 224 GKNLYSLEAFD--IVNSLCFSPNRYWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFA 300 (315)
T ss_pred CceeEeccCCC--eEeeEEecCCceeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEe
Confidence 99987776543 7999999998655544 445569999999998887775432 1234567899999999999
Q ss_pred EECCCcEEEEECC
Q 001534 650 TTSDNGIKILANS 662 (1058)
Q Consensus 650 ~~~dg~i~iw~~~ 662 (1058)
|..|+.|++|.+.
T Consensus 301 g~td~~irv~qv~ 313 (315)
T KOG0279|consen 301 GYTDNVIRVWQVA 313 (315)
T ss_pred eecCCcEEEEEee
Confidence 9999999999864
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=299.28 Aligned_cols=290 Identities=17% Similarity=0.290 Sum_probs=262.6
Q ss_pred Eeec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCC
Q 001534 341 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1058)
Q Consensus 341 ~~~~-h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd 419 (1058)
++++ |...|.++.|++|.+ .+++++.||.+.|||.-+..+.+- ++-....|..+||+|.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sPS 108 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSPS 108 (343)
T ss_pred EEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECCC
Confidence 5666 899999999999998 688999999999999998776653 3346789999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCC---CceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCC
Q 001534 420 GLMLGVAFSKHIVHLYTYNPT---GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1058)
Q Consensus 420 ~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~ 496 (1058)
|+++|+|+-|....||++.+. .......++.+|.+.+.|+.|.+|+. |+|+|.|.+..+||+++|+.+..|.+|
T Consensus 109 g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~GH 185 (343)
T KOG0286|consen 109 GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHGH 185 (343)
T ss_pred CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecCC
Confidence 999999999999999999865 12344457889999999999998775 999999999999999999999999999
Q ss_pred CCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCC
Q 001534 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1058)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1058)
.+.|.++.+.|. +++.+++|+.|+..++||++.+.....+.+|...|+++.|.|+|.-+++|+. |++.++||++.
T Consensus 186 ~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDlRa 260 (343)
T KOG0286|consen 186 TGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDLRA 260 (343)
T ss_pred cccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEeecC
Confidence 999999999985 6699999999999999999999999999999999999999999999999984 88999999999
Q ss_pred CceeEeecCCC-CCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCc
Q 001534 577 GAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1058)
Q Consensus 577 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1058)
.+.+..+.... ..+|++++|+..|++|++|..|.++.+||.-.++.+..+.+|.. .|.++..+|||..+++|+.|..
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWDs~ 338 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWDST 338 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchhHh
Confidence 98888887442 23689999999999999999999999999999999999997766 7999999999999999999999
Q ss_pred EEEEE
Q 001534 656 IKILA 660 (1058)
Q Consensus 656 i~iw~ 660 (1058)
++||.
T Consensus 339 lriW~ 343 (343)
T KOG0286|consen 339 LRIWA 343 (343)
T ss_pred eeecC
Confidence 99994
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=317.27 Aligned_cols=573 Identities=14% Similarity=0.162 Sum_probs=422.0
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCCCe
Q 001534 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1058)
Q Consensus 352 ~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~ 431 (1058)
..|..-|..++++.+.+....+||.+.-..+.- -+.+...|+|++-..+ +..+|+.. .
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~g~-~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVASGN-K 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEecCc-E
Confidence 555556666888888999999999987665531 1347788999887544 44444333 4
Q ss_pred EEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCC-cee----EEeeCCCCCeEEEEec
Q 001534 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQ----YTFEGHEAPVYSVCPH 506 (1058)
Q Consensus 432 i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~-~~~----~~l~~~~~~v~~~~~~ 506 (1058)
|.+|. .++.++. .+..|...|.-+.- -|. .++++..++.+.||+...+ ..+ .-++.....|+++ +|
T Consensus 97 i~~~~--rgk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~H 167 (910)
T KOG1539|consen 97 IYAYA--RGKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LH 167 (910)
T ss_pred EEEEE--ccceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ec
Confidence 55554 3433332 45567766765543 477 6888999999999998874 221 1222333337776 46
Q ss_pred ccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCC
Q 001534 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1058)
Q Consensus 507 ~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1058)
|..--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|--..++.|.. +|+|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 6655578999999999999999999999999999999999999999999999874 889999999999999999976
Q ss_pred CCCceeEEEEcCCCCEEEE-EeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCC-
Q 001534 587 RKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG- 664 (1058)
Q Consensus 587 ~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~- 664 (1058)
.+ .|+.++|..||+.+++ |+..|.+.+||++..+.+..+... |.+.+....|-|....+++++.|+.+++|=.+++
T Consensus 244 ~g-~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~na-h~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d 321 (910)
T KOG1539|consen 244 WG-RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNA-HYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD 321 (910)
T ss_pred cc-ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecc-ccCCcccceecCCCceEeeccCCCceeEEEeeCCC
Confidence 55 8999999999986555 667799999999988887777532 2347889999999999999999999998866544
Q ss_pred --ceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCcc-ccc
Q 001534 665 --VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKP-RVA 741 (1058)
Q Consensus 665 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 741 (1058)
.++++...||...... ++.+ ...|.. +.+
T Consensus 322 g~pR~LR~R~GHs~Pp~~------------irfy------------------------------------~~~g~~ilsa 353 (910)
T KOG1539|consen 322 GVPRLLRSRGGHSAPPSC------------IRFY------------------------------------GSQGHFILSA 353 (910)
T ss_pred CcchheeeccCCCCCchh------------eeee------------------------------------ccCcEEEEec
Confidence 2344455555443211 1111 122333 334
Q ss_pred cccccccccccCCcCCccceeEEec---CC-----------CcCcCceEEEEEccC-----CceEEEeeccceEEEEEcc
Q 001534 742 EDVDKIKSWRIPDISDPSQIKALRL---PD-----------SIAASKVVRLIYTNS-----GLSLLALASNAVHKLWKWQ 802 (1058)
Q Consensus 742 ~~~~~v~~w~~~~~~~~~~~~~~~~---~~-----------~~~~~~i~~l~~s~~-----g~~l~~~~~dg~i~vw~~~ 802 (1058)
+.|++.+.+.+.. ..+.+.+.. +. .....+|..+++... ...+.+--.+..++.|++.
T Consensus 354 ~~Drt~r~fs~~~---e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~ 430 (910)
T KOG1539|consen 354 KQDRTLRSFSVIS---ESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFR 430 (910)
T ss_pred ccCcchhhhhhhH---HHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEecc
Confidence 4567777776653 222333332 00 011223444444332 2223333334556666554
Q ss_pred cCCCCCCCcccccccccccCCCCCCcc--ccccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEECCCceEEEEe--
Q 001534 803 RTERNPSGKATANVAPQLWQPPSGTLM--TNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF-- 877 (1058)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~-- 877 (1058)
.. ..|+.. ...++. . ...+++++.|+.|.+.+.|+ .|.|.+|++++|-....+
T Consensus 431 n~-------------------~~G~~~L~~~~~~~--~-~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~ 488 (910)
T KOG1539|consen 431 NK-------------------TSGRHVLDPKRFKK--D-DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGD 488 (910)
T ss_pred Cc-------------------ccccEEecCccccc--c-CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccccc
Confidence 21 111111 111111 2 57899999999999999998 899999999999998888
Q ss_pred -cCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001534 878 -MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 956 (1058)
Q Consensus 878 -~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~ 956 (1058)
..|.++|+.++... -++.+++++.+|-+++||..+..++..++ -...++++..+.....+|.+..|-.|+++|+.+.
T Consensus 489 ~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~ 566 (910)
T KOG1539|consen 489 SPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR 566 (910)
T ss_pred CccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhh
Confidence 57999999999998 88999999999999999999988888776 3456888889989999999999999999999985
Q ss_pred ccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEE-eCCeEEEEeC-CCCeeeEEee-ccccceEEccCCcEEEEEECC
Q 001534 957 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLECSRSVSF-LSLCPYVFGVSSIFLLSTLTK 1033 (1058)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~-~d~~i~vwd~-~~~~~~~~~~-~~~~~~~~s~~~~~l~~~~~d 1033 (1058)
+ ..+.+.||. ..|++++|||||++|+++ .|++|++||+ ++.++..+.. .....+.|+|.|.||+++..|
T Consensus 567 k-----vvR~f~gh~---nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 567 K-----VVREFWGHG---NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred h-----hhHHhhccc---cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence 5 556677887 789999999999999996 9999999999 9999988877 447789999999999999998
Q ss_pred -CeEEEEcCCCC
Q 001534 1034 -LSVAVHDPLMK 1044 (1058)
Q Consensus 1034 -~~v~vw~~~~~ 1044 (1058)
..|.+|....-
T Consensus 639 ~~gIylWsNksl 650 (910)
T KOG1539|consen 639 QNGIYLWSNKSL 650 (910)
T ss_pred CceEEEEEchhH
Confidence 88999975433
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=292.17 Aligned_cols=249 Identities=16% Similarity=0.220 Sum_probs=230.3
Q ss_pred cccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEE
Q 001534 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1058)
Q Consensus 403 ~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vw 482 (1058)
++++|.+.|.++.|++|+++|++++.||.+.|||.-+..... .+.-....|..++|+|.|+ +++.|+-|....||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 378999999999999999999999999999999998876555 4455678999999999999 89999999999999
Q ss_pred EcCCC------ceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcC-CCCE
Q 001534 483 DVVAG------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA-DGTR 555 (1058)
Q Consensus 483 d~~~~------~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 555 (1058)
++.+. +..+.+.+|.+.+.++.|..+ ..|+++|.|.+..+||+++++....+.+|.+.|.++.++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD---~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD---NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCC---CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 99865 345678999999999999753 6899999999999999999999999999999999999999 9999
Q ss_pred EEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCc
Q 001534 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1058)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1058)
+++++. |...++||++.+.+++.|.+|.. .|++++|.|+|.-+++|++|++.++||++..+.+..+.......+|
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence 999986 77799999999999999999998 8999999999999999999999999999999999999888777899
Q ss_pred ceEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001534 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
++++||..|++|++|..|.++.+||.-.+
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeecccc
Confidence 99999999999999999999999998665
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=280.72 Aligned_cols=300 Identities=17% Similarity=0.259 Sum_probs=249.9
Q ss_pred eEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceE
Q 001534 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1058)
Q Consensus 490 ~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1058)
..++++|.+.|+.++..+. +.+.+++++.|.++.+|++.. +
T Consensus 8 ~~tl~gh~d~Vt~la~~~~-~~~~l~sasrDk~ii~W~L~~-----------------------------------d--- 48 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIK-NSDILVSASRDKTIIVWKLTS-----------------------------------D--- 48 (315)
T ss_pred eeeecCCCceEEEEEeecC-CCceEEEcccceEEEEEEecc-----------------------------------C---
Confidence 4578899999999998876 447899999999999997652 1
Q ss_pred EEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEE
Q 001534 570 VEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAV 649 (1058)
Q Consensus 570 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 649 (1058)
|...|.+++.+.||.. .|..+..+++|++.++++.|+++++||+.+++....+.+|.. .|.+++|++|.+.+++
T Consensus 49 ---d~~~G~~~r~~~GHsH-~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~--dVlsva~s~dn~qivS 122 (315)
T KOG0279|consen 49 ---DIKYGVPVRRLTGHSH-FVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK--DVLSVAFSTDNRQIVS 122 (315)
T ss_pred ---ccccCceeeeeeccce-EecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCC--ceEEEEecCCCceeec
Confidence 3455888999999877 899999999999999999999999999999999999988765 7999999999999999
Q ss_pred EECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCC
Q 001534 650 TTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTID 729 (1058)
Q Consensus 650 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1058)
|+.|.+|++|+..... .
T Consensus 123 GSrDkTiklwnt~g~c-k-------------------------------------------------------------- 139 (315)
T KOG0279|consen 123 GSRDKTIKLWNTLGVC-K-------------------------------------------------------------- 139 (315)
T ss_pred CCCcceeeeeeecccE-E--------------------------------------------------------------
Confidence 9999999999875431 0
Q ss_pred CccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCC
Q 001534 730 GSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPS 809 (1058)
Q Consensus 730 ~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~ 809 (1058)
++..++
T Consensus 140 ----------------------------------------------------------~t~~~~---------------- 145 (315)
T KOG0279|consen 140 ----------------------------------------------------------YTIHED---------------- 145 (315)
T ss_pred ----------------------------------------------------------EEEecC----------------
Confidence 000001
Q ss_pred CcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccC--CcEEEEEe-CCeEEEEECCCceEEEEecCCCCCeEE
Q 001534 810 GKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN--DSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATF 886 (1058)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d--~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~ 886 (1058)
.+ ++.|.|+.|+|+ ..+|++++ |++|++||+.+.+....+.+|.+.++.
T Consensus 146 ---------------------------~~-~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t 197 (315)
T KOG0279|consen 146 ---------------------------SH-REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNT 197 (315)
T ss_pred ---------------------------CC-cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEE
Confidence 03 677889999997 67889998 999999999999999999999999999
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeec
Q 001534 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA 966 (1058)
Q Consensus 887 l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 966 (1058)
+++|| ||.++|+|+.||.+.+||++.++.+..+. |...|.+++|+|+.-+|+.+. +..|+|||++++..+....+..
T Consensus 198 ~~vSp-DGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~ 274 (315)
T KOG0279|consen 198 VTVSP-DGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDG 274 (315)
T ss_pred EEECC-CCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccc
Confidence 99999 99999999999999999999999988776 889999999999987777655 4459999999988765533332
Q ss_pred CCC-CCCCCCCeeEEEEcCCCcEEEEE-eCCeEEEEeC
Q 001534 967 PAG-RQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS 1002 (1058)
Q Consensus 967 ~~~-~~~~~~~v~~~~fs~d~~~l~~~-~d~~i~vwd~ 1002 (1058)
... .........+++||+||..|++| .|+.|++|.+
T Consensus 275 ~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 275 IGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred cccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 221 11111235678999999999999 9999999987
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=273.29 Aligned_cols=295 Identities=14% Similarity=0.228 Sum_probs=251.4
Q ss_pred cEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCc--eeEeecCCCCC
Q 001534 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKR 589 (1058)
Q Consensus 512 ~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~ 589 (1058)
-+|++++.|.+||+|...++.+..++....+.|+.+.+.|+++.|++++ ...|++||++++. ++.++.+|..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k- 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK- 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC-
Confidence 5899999999999999999999999999999999999999999999986 6679999999865 6899999988
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeee
Q 001534 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1058)
Q Consensus 590 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 669 (1058)
.|.++.|..+|+.+++||+||+++|||++.......+.. ..+|+++..+|+...|++|..+|.|++||+.+. .+..
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~---~spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~ 160 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH---NSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCTH 160 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC---CCCcceEEecCCcceEEeecCCCcEEEEEccCC-cccc
Confidence 799999999999999999999999999998555555543 358999999999999999999999999999765 1111
Q ss_pred cccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccc
Q 001534 670 MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKS 749 (1058)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 749 (1058)
.+
T Consensus 161 ~l------------------------------------------------------------------------------ 162 (311)
T KOG0315|consen 161 EL------------------------------------------------------------------------------ 162 (311)
T ss_pred cc------------------------------------------------------------------------------
Confidence 11
Q ss_pred cccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCcc
Q 001534 750 WRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLM 829 (1058)
Q Consensus 750 w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (1058)
.|+ ....|.++.+.|||+.++++...|..++|++...... + .+
T Consensus 163 ----------------iPe--~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~-----------------s--~l 205 (311)
T KOG0315|consen 163 ----------------IPE--DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA-----------------S--EL 205 (311)
T ss_pred ----------------CCC--CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc-----------------c--cc
Confidence 011 3356889999999999999999999999998642110 1 01
Q ss_pred ccccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEECCCc-eEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEE
Q 001534 830 TNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQ 907 (1058)
Q Consensus 830 ~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~ 907 (1058)
....+..+| .+-+..+.+|||+++||+++ |.+++||+.++. +.-..+.+|...+..++||. ||++|++|+.|++++
T Consensus 206 ~P~~k~~ah-~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~r 283 (311)
T KOG0315|consen 206 EPVHKFQAH-NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTAR 283 (311)
T ss_pred eEhhheecc-cceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCcee
Confidence 101112237 88899999999999999998 999999999987 66777899999999999999 999999999999999
Q ss_pred EEEcccceeEEEEeCCCCCeEEEEEc
Q 001534 908 IYNVRVDEVKTKLKGHQNRITGLAFS 933 (1058)
Q Consensus 908 iwd~~~~~~~~~l~~h~~~v~~l~~s 933 (1058)
+|++..++.++...+|..+..|++..
T Consensus 284 lW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 284 LWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ecccccCceeeecCCcccccEEEEee
Confidence 99999999999999999988888764
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=307.23 Aligned_cols=550 Identities=16% Similarity=0.232 Sum_probs=383.4
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEE
Q 001534 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1058)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~ 425 (1058)
+..|..++|+|... ++.++-..|.|.+||.+-+..+.. +.+|.++|..++|+|++.++++
T Consensus 9 SsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFVS 68 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFVS 68 (1202)
T ss_pred cccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEEe
Confidence 56899999999998 567788999999999999988775 7889999999999999999999
Q ss_pred EeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEe
Q 001534 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1058)
Q Consensus 426 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~ 505 (1058)
|+.|..|+||+.++.+++. ++.||-..|+.+.|++.-. .++++|.|.+|+||++.+++++..+.||...|.|..|
T Consensus 69 GGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqF 143 (1202)
T KOG0292|consen 69 GGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQF 143 (1202)
T ss_pred cCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeecc
Confidence 9999999999999987766 8889999999999999887 8999999999999999999999999999999999999
Q ss_pred cccCCccEEEEEeCCCeEEEEeCCCCC---------------------------c--eEEecCCCCcEEEEEEcCCCCEE
Q 001534 506 HHKESIQFIFSTAIDGKIKAWLYDYLG---------------------------S--RVDYDAPGNWCTMMAYSADGTRL 556 (1058)
Q Consensus 506 ~~~~~~~~l~s~s~d~~i~~wd~~~~~---------------------------~--~~~~~~~~~~v~~~~~s~~~~~l 556 (1058)
+|.. +.++++|-|.+||+||+...+ . ...+.+|...|+-++|+|.-..+
T Consensus 144 hptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpli 221 (1202)
T KOG0292|consen 144 HPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLI 221 (1202)
T ss_pred CCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceE
Confidence 9876 699999999999999975210 1 12467888899999999999999
Q ss_pred EEEecCCCCCceEEEeeCCCCc--eeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCC
Q 001534 557 FSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1058)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1058)
++|+. |..|++|.....+ .+.+..+|.+ .|.++-|+|..+.+++.|+|++|+|||+.....++++..... .
T Consensus 222 VSG~D----DRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend--R 294 (1202)
T KOG0292|consen 222 VSGAD----DRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND--R 294 (1202)
T ss_pred EecCC----cceeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC--e
Confidence 99984 7789999887543 4556788888 899999999999999999999999999999999999976544 6
Q ss_pred cceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCC
Q 001534 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714 (1058)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1058)
...++.+|..+.+++|. |+.+.+|.++......
T Consensus 295 FW~laahP~lNLfAAgH-DsGm~VFkleRErpa~---------------------------------------------- 327 (1202)
T KOG0292|consen 295 FWILAAHPELNLFAAGH-DSGMIVFKLERERPAY---------------------------------------------- 327 (1202)
T ss_pred EEEEEecCCcceeeeec-CCceEEEEEcccCceE----------------------------------------------
Confidence 78999999998887765 4556677665331111
Q ss_pred CCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEee--c
Q 001534 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALA--S 792 (1058)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~--~ 792 (1058)
...+..+....+..|+.+|+.+... .....+..++. ...++.++.|+|....++.++ .
T Consensus 328 ------------------~v~~n~LfYvkd~~i~~~d~~t~~d-~~v~~lr~~g~-~~~~~~smsYNpae~~vlics~~~ 387 (1202)
T KOG0292|consen 328 ------------------AVNGNGLFYVKDRFIRSYDLRTQKD-TAVASLRRPGT-LWQPPRSLSYNPAENAVLICSNLD 387 (1202)
T ss_pred ------------------EEcCCEEEEEccceEEeeecccccc-ceeEeccCCCc-ccCCcceeeeccccCeEEEEeccC
Confidence 0111122223356777777765222 22222322221 346778999999877655553 2
Q ss_pred cceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEeCCeEEEEECCCce
Q 001534 793 NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK 872 (1058)
Q Consensus 793 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~sdg~i~iwd~~~~~ 872 (1058)
+|...++.++..... . ..++. ..+ ......+-...++-.+..-++..+.+-++.+ +
T Consensus 388 n~~y~L~~ipk~~~~---~------------~~~~~---~~k-----~tG~~a~fvarNrfavl~k~~~~v~ik~l~N-~ 443 (1202)
T KOG0292|consen 388 NGEYELVQIPKDSDG---V------------SDGKD---VKK-----GTGEGALFVARNRFAVLDKSNEQVVIKNLKN-K 443 (1202)
T ss_pred CCeEEEEEecCcccc---c------------CCchh---hhc-----CCCCceEEEEecceEEEEecCcceEEecccc-h
Confidence 466666665432110 0 00000 011 2223333333333222222355566666653 2
Q ss_pred EEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001534 873 VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1058)
Q Consensus 873 ~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd 952 (1058)
..+.+... .....+-+.. .|.+|.. ....|.++|+...+.+..++ ...|.-+.||+|..++|--+. ++|.|.+
T Consensus 444 vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAll~K-h~i~i~~ 516 (1202)
T KOG0292|consen 444 VTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVALLSK-HTITIAD 516 (1202)
T ss_pred hhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe--cCceeEEEEcCccchhhhccc-ceEEEEe
Confidence 22333221 2445566665 6766654 34479999999888777775 466889999999998887664 5688887
Q ss_pred CCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEEeCCeEEEEeC-CCCeeeEEeeccccceEEccCCcEEEEEE
Q 001534 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSVSFLSLCPYVFGVSSIFLLSTL 1031 (1058)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 1031 (1058)
.+- +.+.+ +.. . -.|.+-+|..+|-+|.+..+.- + |.+ +++ -..++.+....+-+...|+.+++-.
T Consensus 517 kkL-~l~~s----ihE--t---iriksgawde~gVfiYtT~nHi-k-Yal~~GD-~GIikTLd~~iyitkv~gn~V~cl~ 583 (1202)
T KOG0292|consen 517 KKL-ELLCS----IHE--T---IRIKSGAWDEDGVFIYTTLNHI-K-YALENGD-SGIIKTLDKPIYITKVKGNKVFCLN 583 (1202)
T ss_pred cch-hheec----chh--e---eEeeeceeccCceEEEEehhhh-h-hhhccCC-cceEEecccceEEEEeeCCEEEEEe
Confidence 543 11100 111 1 3477888888888777642211 0 111 111 1222333333344445666666666
Q ss_pred CCCeEEEEc
Q 001534 1032 TKLSVAVHD 1040 (1058)
Q Consensus 1032 ~d~~v~vw~ 1040 (1058)
.|+.+.+.+
T Consensus 584 rd~~~~~~~ 592 (1202)
T KOG0292|consen 584 RDGEIECLT 592 (1202)
T ss_pred cCCCeEEEe
Confidence 666666554
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=274.86 Aligned_cols=286 Identities=17% Similarity=0.273 Sum_probs=242.3
Q ss_pred CCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEe
Q 001534 358 QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTY 437 (1058)
Q Consensus 358 g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~ 437 (1058)
..-+|++++.|.+|++|...+|.+..+ +....+.|+.+...||++.||+++.- .||+||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEEc
Confidence 335899999999999999999998764 44467789999999999999998655 6999999
Q ss_pred cCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEE
Q 001534 438 NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517 (1058)
Q Consensus 438 ~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~ 517 (1058)
.++..- +..++.+|...|+++.|..||+ .++|||+||+++|||++...+.+.++ |..+|+++..+|+. ..|++|
T Consensus 69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~ 142 (311)
T KOG0315|consen 69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISG 142 (311)
T ss_pred cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEee
Confidence 997753 4558899999999999999999 89999999999999999976666665 77999999999765 689999
Q ss_pred eCCCeEEEEeCCCCCceEEec-CCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCC------ceeEeecCCCCCc
Q 001534 518 AIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG------AIKRTYSGFRKRS 590 (1058)
Q Consensus 518 s~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~------~~~~~~~~~~~~~ 590 (1058)
..+|.|++||+........+. .....|.+++..|||.+++++. ..|..++|++-++ +++..++.|.. .
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n----nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~ 217 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN----NKGNCYVWRLLNHQTASELEPVHKFQAHNG-H 217 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec----CCccEEEEEccCCCccccceEhhheecccc-e
Confidence 999999999999876555443 3445899999999999999886 4888999998764 35667888887 7
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeec
Q 001534 591 LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 670 (1058)
Q Consensus 591 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 670 (1058)
+..+.+||++++|++++.|.+++||+.++. ....+...++...+..++||.||.||++|+.|+.+++|++..+ +.++.
T Consensus 218 il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~q 295 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVRQ 295 (311)
T ss_pred EEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC-ceeee
Confidence 888889999999999999999999999988 3333333444558999999999999999999999999999999 56666
Q ss_pred ccCCcc
Q 001534 671 LEGRAM 676 (1058)
Q Consensus 671 ~~~~~~ 676 (1058)
..+|..
T Consensus 296 y~gh~K 301 (311)
T KOG0315|consen 296 YQGHHK 301 (311)
T ss_pred cCCccc
Confidence 666654
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=284.77 Aligned_cols=339 Identities=18% Similarity=0.273 Sum_probs=290.8
Q ss_pred eeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEe
Q 001534 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (1058)
Q Consensus 448 ~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd 527 (1058)
.|..|+..|.+++.+|+.+ +++||+.|....+|++.+|.....+.+|...|+++.|+ .+|.+|++|+-+|.|++|.
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs--hdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS--HDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEc--cCceEEEecCCCccEEEEE
Confidence 6788999999999999776 89999999999999999999999999999999999999 5669999999999999999
Q ss_pred CCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEe
Q 001534 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1058)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1058)
..++.....+......+.-+.|+|.+..|++|+. |+.+.+|.+.++...+.+.+|.. ++++-.|.|+|++++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 9999999998878889999999999999999874 88899999999888899999888 899999999999999999
Q ss_pred CCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCC
Q 001534 608 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (1058)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1058)
.||+|++||+.+++++..+....+ ....++.++..+..++.|+.++.+.+-+..+++ .+....+
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK-Vv~~~n~-------------- 273 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGK-VVNCNNG-------------- 273 (399)
T ss_pred cCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccce-EEEecCC--------------
Confidence 999999999999999999976554 367889999999999999999998887766552 1111100
Q ss_pred CCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecC
Q 001534 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 767 (1058)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~ 767 (1058)
T Consensus 274 -------------------------------------------------------------------------------- 273 (399)
T KOG0296|consen 274 -------------------------------------------------------------------------------- 273 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEE
Q 001534 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1058)
Q Consensus 768 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~ 847 (1058)
.+..+- ....+....|.++.
T Consensus 274 ---------------~~~~l~---------------------------------------------~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 274 ---------------TVPELK---------------------------------------------PSQEELDESVESIP 293 (399)
T ss_pred ---------------CCcccc---------------------------------------------ccchhhhhhhhhcc
Confidence 000000 00001134455566
Q ss_pred EccCCcEEEEEe-CCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCC
Q 001534 848 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR 926 (1058)
Q Consensus 848 ~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~ 926 (1058)
+|..-.+.|+|+ ||+|.|||+.+.++...+. |...|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.||..+
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~ 370 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG 370 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchh
Confidence 666777889999 9999999999877766665 888899999987 468889999999999999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001534 927 ITGLAFSPTLNALVSSGADAQLCMWSID 954 (1058)
Q Consensus 927 v~~l~~spd~~~l~s~s~D~~i~iwd~~ 954 (1058)
|.+++++|+.++++|+|.|++.+|++.+
T Consensus 371 Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 371 ILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999875
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=301.12 Aligned_cols=536 Identities=14% Similarity=0.167 Sum_probs=376.9
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCC---EEEEEeC
Q 001534 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL---MLGVAFS 428 (1058)
Q Consensus 352 ~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~---~l~~~~~ 428 (1058)
..|.|.+ ++|.| ....|.+||..+..... .+.||..+|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafG-a~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFG-AGPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEec-CCceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3456665 46665 46789999987653322 2789999999999999888 8999999
Q ss_pred CCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCc--eeEEeeCCCCC--eEEEE
Q 001534 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGHEAP--VYSVC 504 (1058)
Q Consensus 429 d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~--~~~~l~~~~~~--v~~~~ 504 (1058)
|+.|++|.++. +.+.....+.+|...+.|+ +.... .......|+++.+||.+..+ +...+.-..+. ..|++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv--~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECVCV--VARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEEEE--Eeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999994 4455555777777655554 43222 22233789999999985444 22333322222 23445
Q ss_pred ecccCCccEEEEEeCCCeEEEEeCCCC--CceEEecCCCCcEEEEEEcCCCC---EEEEEecCCCCCceEEEeeCCCCc-
Q 001534 505 PHHKESIQFIFSTAIDGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSADGT---RLFSCGTSKEGESHLVEWNESEGA- 578 (1058)
Q Consensus 505 ~~~~~~~~~l~s~s~d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~~~~~~~~i~~wd~~~~~- 578 (1058)
+.++++.-.++.|+.+..|.++.-.+. .....+.+|...|.+++|...+. +|++++ .|..|++|.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCC
Confidence 555444445667778888888865543 33457899999999999987554 444554 58899999764322
Q ss_pred --------------------ee----------EeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCce--E--E
Q 001534 579 --------------------IK----------RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--L--T 624 (1058)
Q Consensus 579 --------------------~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~--~ 624 (1058)
.. ..+.||.+ .|.++.|+|.+..|++++.|.++.+|...+..- + .
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v 307 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV 307 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEE
Confidence 11 11237777 899999999999999999999999998776522 2 2
Q ss_pred EEecC-CCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccc
Q 001534 625 TVDAD-GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703 (1058)
Q Consensus 625 ~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1058)
.+..- +........-|+|++..+++-+..|..++|......
T Consensus 308 RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~-------------------------------------- 349 (764)
T KOG1063|consen 308 RLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT-------------------------------------- 349 (764)
T ss_pred EeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc--------------------------------------
Confidence 22211 222346789999999999999999999999832220
Q ss_pred cccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccC
Q 001534 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 783 (1058)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 783 (1058)
.|... .-..+|...|.++++.|.
T Consensus 350 ---------------------------------------------~w~~~------------~~iSGH~~~V~dv~W~ps 372 (764)
T KOG1063|consen 350 ---------------------------------------------FWTQE------------PVISGHVDGVKDVDWDPS 372 (764)
T ss_pred ---------------------------------------------ceeec------------cccccccccceeeeecCC
Confidence 01100 000248899999999999
Q ss_pred CceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEeC-Ce
Q 001534 784 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG-GK 862 (1058)
Q Consensus 784 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~sd-g~ 862 (1058)
|.+|++.+.|.+-+++.-- |+.. -| ..+.+ ..-| ...++|++|-+....+++|.| ..
T Consensus 373 GeflLsvs~DQTTRlFa~w-------g~q~------~w-----HEiaR---PQiH-GyDl~c~~~vn~~~~FVSgAdEKV 430 (764)
T KOG1063|consen 373 GEFLLSVSLDQTTRLFARW-------GRQQ------EW-----HEIAR---PQIH-GYDLTCLSFVNEDLQFVSGADEKV 430 (764)
T ss_pred CCEEEEeccccceeeeccc-------cccc------ce-----eeecc---cccc-cccceeeehccCCceeeeccccee
Confidence 9999999999988886321 0000 01 11111 1126 778888888875555556654 45
Q ss_pred EEEEECCC-------------------------------------------ce---------------------------
Q 001534 863 VSLFNMMT-------------------------------------------FK--------------------------- 872 (1058)
Q Consensus 863 i~iwd~~~-------------------------------------------~~--------------------------- 872 (1058)
+++|+... |.
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq 510 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ 510 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence 78886521 00
Q ss_pred ------EEEEecCCCCCeEEEEEeCCCCCEEEEEeCCC-----eEEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEE
Q 001534 873 ------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS-----SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 941 (1058)
Q Consensus 873 ------~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg-----~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s 941 (1058)
.+..+.||.-+|.+++.+| +++++|+++... .|++|+..+......+.+|+-.|+.|+|||||++|++
T Consensus 511 ~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLs 589 (764)
T KOG1063|consen 511 QNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLS 589 (764)
T ss_pred HhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEE
Confidence 0112357888999999999 999999998664 5999999998888899999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEE-eCCeEEEEeC-CC--CeeeEEee----c
Q 001534 942 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KL--ECSRSVSF----L 1013 (1058)
Q Consensus 942 ~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~-~d~~i~vwd~-~~--~~~~~~~~----~ 1013 (1058)
+|.|+++.+|.........- .......|. ..|.++.|+||+++++|+ .|++|+||.. +. +++..+.+ .
T Consensus 590 vsRDRt~sl~~~~~~~~~e~-~fa~~k~Ht---RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~ 665 (764)
T KOG1063|consen 590 VSRDRTVSLYEVQEDIKDEF-RFACLKAHT---RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSL 665 (764)
T ss_pred eecCceEEeeeeecccchhh-hhccccccc---eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCC
Confidence 99999999999866443322 122344454 789999999999999997 9999999999 55 56655433 3
Q ss_pred cccceEEcc----CCc-EEEEEECCCeEEEEcC
Q 001534 1014 SLCPYVFGV----SSI-FLLSTLTKLSVAVHDP 1041 (1058)
Q Consensus 1014 ~~~~~~~s~----~~~-~l~~~~~d~~v~vw~~ 1041 (1058)
+++.+++.+ +.. .++.|...|.|.+|.-
T Consensus 666 aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 666 AVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred ceeeEEeeccccccccceEEEEecccEEEEEec
Confidence 467777654 223 4566666999999983
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=291.56 Aligned_cols=309 Identities=19% Similarity=0.282 Sum_probs=273.0
Q ss_pred ecCCCCCcceecCCccccceeEeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeeccccccccc
Q 001534 320 FAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 399 (1058)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1058)
..|.+..-.-..|-..+....+...|..+|+.+-|+|+-. ++++++.|++|++||..+|+....
T Consensus 82 g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~--------------- 145 (406)
T KOG0295|consen 82 GDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS--------------- 145 (406)
T ss_pred CCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh---------------
Confidence 3444433333334444455555666999999999999986 889999999999999999998654
Q ss_pred ccccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcE
Q 001534 400 QNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1058)
Q Consensus 400 ~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v 479 (1058)
++||...|..++|+..|++||+++.|-.+++||.++. .+..+.+.+|...|.++.|-|-|. ++++++.|.+|
T Consensus 146 ----LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~ti 217 (406)
T KOG0295|consen 146 ----LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTI 217 (406)
T ss_pred ----hhccccceeEEEEecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccce
Confidence 8899999999999999999999999999999999873 344447779999999999999998 89999999999
Q ss_pred EEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCC------
Q 001534 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG------ 553 (1058)
Q Consensus 480 ~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~------ 553 (1058)
+.|++.+|.+++++.+|...|..+..+ .||.++++++.|.++++|-+.+.++...+..|..+|.+++|.|..
T Consensus 218 k~We~~tg~cv~t~~~h~ewvr~v~v~--~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~ 295 (406)
T KOG0295|consen 218 KAWECDTGYCVKTFPGHSEWVRMVRVN--QDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSIS 295 (406)
T ss_pred eEEecccceeEEeccCchHhEEEEEec--CCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchh
Confidence 999999999999999999999999876 678999999999999999999999999999999999999997642
Q ss_pred ---------CEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE
Q 001534 554 ---------TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1058)
Q Consensus 554 ---------~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1058)
.++.+++ .|++|++||+.+|.++.++.+|.. .|..++|+|.|+|++++.+|+++++||+.++++..
T Consensus 296 ~at~~~~~~~~l~s~S----rDktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 296 EATGSTNGGQVLGSGS----RDKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK 370 (406)
T ss_pred hccCCCCCccEEEeec----ccceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee
Confidence 3566665 588999999999999999999998 89999999999999999999999999999999999
Q ss_pred EEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEEC
Q 001534 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1058)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 661 (1058)
.+..|.+ .++++.|+.+..++++|+-|.++++|..
T Consensus 371 ~~~ah~h--fvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 371 TLEAHEH--FVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ccCCCcc--eeEEEecCCCCceEEeccccceeeeeec
Confidence 9998877 6899999999999999999999999964
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=293.43 Aligned_cols=480 Identities=15% Similarity=0.199 Sum_probs=355.8
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEE
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd 483 (1058)
+..++..|.++.|+|....++++-.+|.|.|||.++...++ .+.-..-+|++..|-+.-+ .+++|+.|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 44589999999999999999999999999999999987777 5566778999999998877 899999999999999
Q ss_pred cCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCC-CceEEecCCCCcEEEEEEcC-CCCEEEEEec
Q 001534 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGT 561 (1058)
Q Consensus 484 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 561 (1058)
..+++.++.|..|...|.+++.||.. .+++++|+|-+|++||.+.. .+..++.+|.+.|.+++|.| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999999876 79999999999999999875 45678999999999999999 5678888875
Q ss_pred CCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCC--CEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEE
Q 001534 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1058)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1058)
|++|++|.+.+..+..++.+|.. .|+|+.+-+.| .+|++|++|.+|+|||..+..+++++.+|.+ .|..+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 88899999999999999999998 89999997644 7999999999999999999999999998876 689999
Q ss_pred EeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCC
Q 001534 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1058)
Q Consensus 640 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1058)
|+|.-..+++|+.||++|||+..+- ++..++.-
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~---------------------------------------------- 267 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY---------------------------------------------- 267 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhhc----------------------------------------------
Confidence 9999999999999999999987665 22222110
Q ss_pred ccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEE
Q 001534 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW 799 (1058)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw 799 (1058)
...++.+++..+.+..++.|..+|.+.+=
T Consensus 268 ---------------------------------------------------gleRvW~I~~~k~~~~i~vG~Deg~i~v~ 296 (794)
T KOG0276|consen 268 ---------------------------------------------------GLERVWCIAAHKGDGKIAVGFDEGSVTVK 296 (794)
T ss_pred ---------------------------------------------------CCceEEEEeecCCCCeEEEeccCCcEEEE
Confidence 23456777777777778888877777651
Q ss_pred EcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEeC--CeEEEE------ECCCc
Q 001534 800 KWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG--GKVSLF------NMMTF 871 (1058)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~sd--g~i~iw------d~~~~ 871 (1058)
+ ......+..++.|+.+-+... -.+.+- ++..|
T Consensus 297 -l--------------------------------------greeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~Dg 337 (794)
T KOG0276|consen 297 -L--------------------------------------GREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDG 337 (794)
T ss_pred -c--------------------------------------cCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCC
Confidence 1 111223455556655443321 112222 23333
Q ss_pred eEEEE----ecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 001534 872 KVMTM----FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947 (1058)
Q Consensus 872 ~~~~~----~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~ 947 (1058)
+.+.. +-.-.-....++-|| +|++++++ .||.-.||..-.. -..+.+.-....|++|....|.--.++.
T Consensus 338 ErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vc-gdGEyiIyTala~-----RnK~fG~~~eFvw~~dsne~avRes~~~ 410 (794)
T KOG0276|consen 338 ERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVC-GDGEYIIYTALAL-----RNKAFGSGLEFVWAADSNEFAVRESNGN 410 (794)
T ss_pred ccccchhhhccccccchHHhccCC-CCcEEEEe-cCccEEEEEeeeh-----hhcccccceeEEEcCCCCeEEEEecCCc
Confidence 32211 111111234577889 99888765 6777777753211 1124455677899999888887777888
Q ss_pred EEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEEeCCeEEEEeC-CCCeeeEEeeccccceEEccCCcE
Q 001534 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSVSFLSLCPYVFGVSSIF 1026 (1058)
Q Consensus 948 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~s~~~~~ 1026 (1058)
|+++ .+.+..+..... ..+.+--.|.+|....++.+++||. +++.++.+...+ ..+.|+.+|.+
T Consensus 411 vki~--knfke~ksi~~~------------~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~~-k~v~w~d~g~l 475 (794)
T KOG0276|consen 411 VKIF--KNFKEHKSIRPD------------MSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVTS-KHVYWSDNGEL 475 (794)
T ss_pred eEEE--ecceeccccccc------------cceeeecCCceEEEEeCCeEEEEEcccceEEEEEeecc-ceeEEecCCCE
Confidence 9888 554433221111 1123333455566668999999998 999999887654 34678889998
Q ss_pred EEEEECCC-eEEEEc---CCCCCccCCccccccc
Q 001534 1027 LLSTLTKL-SVAVHD---PLMKFDRKRKVPWRGV 1056 (1058)
Q Consensus 1027 l~~~~~d~-~v~vw~---~~~~~~~~~~~~~~~~ 1056 (1058)
.+.++.|. .+.-++ .....+....++.+|+
T Consensus 476 Vai~~d~Sfyil~~n~d~v~~a~e~g~~v~eeGi 509 (794)
T KOG0276|consen 476 VAIAGDDSFYILKFNADAVANAVEQGIEVTEEGI 509 (794)
T ss_pred EEEEecCceeEEEecHHHHHHHHhcCCCCcchhH
Confidence 88877655 233333 1222344445555554
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=277.20 Aligned_cols=522 Identities=16% Similarity=0.210 Sum_probs=377.2
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEe
Q 001534 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1058)
Q Consensus 348 ~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~ 427 (1058)
.=..+-+-|.|..+..+ -+.+.+++++...+.. +.+|+..|.|++.+||.-.+++|-
T Consensus 67 cR~Nly~lptgE~vyfv---A~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~~vHPdri~vatGQ 123 (626)
T KOG2106|consen 67 CRNNLYLLPTGELVYFV---AAVGVLYNWEERSQRH--------------------YLGHNDDIKCMAVHPDRIRVATGQ 123 (626)
T ss_pred eeceeEEccCccEEEEe---ccEEEEEeehhhhccc--------------------ccCCCCceEEEeecCCceeeccCc
Confidence 33456677888733332 3467788886643332 679999999999999999999875
Q ss_pred CCC--------eEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEE--EcCCCcEEEEEcCCCceeEEeeCCC
Q 001534 428 SKH--------IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT--CGDDKMIKVWDVVAGRKQYTFEGHE 497 (1058)
Q Consensus 428 ~d~--------~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s--~~~d~~v~vwd~~~~~~~~~l~~~~ 497 (1058)
.-| .+++||..+-..+. .+......|+|++||+-+...++.. -+.+..+.+||+..+......+..+
T Consensus 124 ~ag~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sn 200 (626)
T KOG2106|consen 124 GAGTSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSN 200 (626)
T ss_pred ccccCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceecc
Confidence 444 49999976654444 5556677899999998543323333 3567789999999998888777778
Q ss_pred CCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEE---ecC-CCCcEEEEEEcCCCCEEEEEecCCCCCceEEEee
Q 001534 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD---YDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1058)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~---~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1058)
..|....|+|..+ + ++.....+.+.+|+.+.+..... +.. ....|.+++|.++|..+- + |.+|.|.||+
T Consensus 201 e~v~~a~FHPtd~-n-liit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT-g----DS~G~i~Iw~ 273 (626)
T KOG2106|consen 201 EVVFLATFHPTDP-N-LIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT-G----DSGGNILIWS 273 (626)
T ss_pred ceEEEEEeccCCC-c-EEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe-e----cCCceEEEEe
Confidence 8899999998764 4 44445578999999887665443 222 235899999999998764 3 3488899999
Q ss_pred CCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECC
Q 001534 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1058)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1058)
..+.+..+....|.+ .|.+++...+|. |++|+.|+.|..|| ..-+.+.....+...++|..++-...+ |++|+..
T Consensus 274 ~~~~~~~k~~~aH~g-gv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtr 348 (626)
T KOG2106|consen 274 KGTNRISKQVHAHDG-GVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTR 348 (626)
T ss_pred CCCceEEeEeeecCC-ceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeecc
Confidence 988887777777776 899999998886 55599999999999 555566666666666677766543322 6777666
Q ss_pred CcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccc
Q 001534 654 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 733 (1058)
Q Consensus 654 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1058)
+.|..=.++++..+.
T Consensus 349 N~iL~Gt~~~~f~~~----------------------------------------------------------------- 363 (626)
T KOG2106|consen 349 NFILQGTLENGFTLT----------------------------------------------------------------- 363 (626)
T ss_pred ceEEEeeecCCceEE-----------------------------------------------------------------
Confidence 555443333321110
Q ss_pred cCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCccc
Q 001534 734 VDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKAT 813 (1058)
Q Consensus 734 ~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 813 (1058)
. .+|......++..|+..++++++.|+.+++|+-..
T Consensus 364 --------------------------------v--~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k---------- 399 (626)
T KOG2106|consen 364 --------------------------------V--QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK---------- 399 (626)
T ss_pred --------------------------------E--EecccceeeEEcCCChhheeeccCcceEEEccCCc----------
Confidence 0 12667788899999999999999999999996110
Q ss_pred ccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEECCCceEEEEecCCCCCeEEEEEeCC
Q 001534 814 ANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 892 (1058)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~ 892 (1058)
-+|.. .. ..++.|++|+|.| .+|.|. .|...+.|.++...+..-.. ..++++++|+|
T Consensus 400 -----~~wt~----------~~----~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp- 457 (626)
T KOG2106|consen 400 -----LEWTK----------II----EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP- 457 (626)
T ss_pred -----eeEEE----------Ee----cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-
Confidence 01211 11 5678899999999 899998 89999999998666555444 88999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcccc-eeEEEE-eCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccce--------
Q 001534 893 DNNIIAIGMEDSSVQIYNVRVD-EVKTKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR-------- 962 (1058)
Q Consensus 893 ~~~~lasg~~dg~I~iwd~~~~-~~~~~l-~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~-------- 962 (1058)
+|.+||.|+.|+.|+||.+... ...... +.|..+|+.|.||+|+++|.+.+.|-.|..|. .+.-+....
T Consensus 458 ~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~-~~~~~~~ts~kDvkW~t 536 (626)
T KOG2106|consen 458 DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK-PSECKQITSVKDVKWAT 536 (626)
T ss_pred CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc-cccCcccceecceeeee
Confidence 9999999999999999998754 322222 33448999999999999999999999999993 322211110
Q ss_pred ---e--eecCCCCCCCCCCeeEEEEcCCCcEEEEE-eCCeEEEEeC---CCCe-eeEEee--ccccceEEccCCcEEEEE
Q 001534 963 ---F--IQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS---KLEC-SRSVSF--LSLCPYVFGVSSIFLLST 1030 (1058)
Q Consensus 963 ---~--~~~~~~~~~~~~~v~~~~fs~d~~~l~~~-~d~~i~vwd~---~~~~-~~~~~~--~~~~~~~~s~~~~~l~~~ 1030 (1058)
. .....+. +...|..++-+.+.+++++| ..|.|++|.. ..+. ...... ..+.+++|..+...+++.
T Consensus 537 ~~c~lGF~v~g~s--~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~t 614 (626)
T KOG2106|consen 537 YTCTLGFEVFGGS--DGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLIST 614 (626)
T ss_pred eEEEEEEEEeccc--CCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEec
Confidence 0 1111111 22456777888889999998 7789999998 1111 111222 338999999999999999
Q ss_pred ECCCeEEEEcC
Q 001534 1031 LTKLSVAVHDP 1041 (1058)
Q Consensus 1031 ~~d~~v~vw~~ 1041 (1058)
++|.+|..|.+
T Consensus 615 g~D~Si~qW~l 625 (626)
T KOG2106|consen 615 GKDTSIMQWRL 625 (626)
T ss_pred CCCceEEEEEe
Confidence 99999999985
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=302.30 Aligned_cols=465 Identities=18% Similarity=0.287 Sum_probs=342.6
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEE
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd 483 (1058)
+...+..|..++|+|...+++++-..|.|++||.+-+..+. .+..|.++|+.++|+|++. ++++|+.|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 44567789999999999999999999999999999988777 7889999999999999999 999999999999999
Q ss_pred cCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001534 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1058)
Q Consensus 484 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1058)
.++.+++.++.||-..|..+.|++.- .+|+++|+|.+|++|+..+.+++..+.+|.+.|.|..|+|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 99999999999999999999999765 79999999999999999999999999999999999999999999999986
Q ss_pred CCCceEEEeeCCCCc-----------------------------eeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEE
Q 001534 564 EGESHLVEWNESEGA-----------------------------IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1058)
Q Consensus 564 ~~~~~i~~wd~~~~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 614 (1058)
|.+|++||+..-+ ....+.||.. .|+-++|+|.-..+++|++|..|++
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeE
Confidence 7889999984210 1234567766 7999999999999999999999999
Q ss_pred EECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCcccc
Q 001534 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 694 (1058)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1058)
|.+..-+.-..-...+|...|.++-|+|....+++.+.|++|++||+... ..+++++.
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrr--------------------- 290 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRR--------------------- 290 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeec---------------------
Confidence 99986654443344455668999999999999999999999999999765 33332211
Q ss_pred ccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCc
Q 001534 695 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 774 (1058)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1058)
..++
T Consensus 291 ----------------------------------------------------------------------------endR 294 (1202)
T KOG0292|consen 291 ----------------------------------------------------------------------------ENDR 294 (1202)
T ss_pred ----------------------------------------------------------------------------cCCe
Confidence 3345
Q ss_pred eEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcE
Q 001534 775 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 854 (1058)
Q Consensus 775 i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~ 854 (1058)
...++..|..+.++++- |+-+.+|.+.. +.++. ++ ++..
T Consensus 295 FW~laahP~lNLfAAgH-DsGm~VFkleR------------------------------------Erpa~--~v--~~n~ 333 (1202)
T KOG0292|consen 295 FWILAAHPELNLFAAGH-DSGMIVFKLER------------------------------------ERPAY--AV--NGNG 333 (1202)
T ss_pred EEEEEecCCcceeeeec-CCceEEEEEcc------------------------------------cCceE--EE--cCCE
Confidence 66778888888555544 54455555431 22232 33 3334
Q ss_pred EEEEeCCeEEEEECCCceE--EEEecCC---CCCeEEEEEeCCCCCEEEEEeCCC-eEEEEEcccc--------------
Q 001534 855 VMSASGGKVSLFNMMTFKV--MTMFMSP---PPAATFLAFHPQDNNIIAIGMEDS-SVQIYNVRVD-------------- 914 (1058)
Q Consensus 855 la~~sdg~i~iwd~~~~~~--~~~~~~~---~~~i~~l~~s~~~~~~lasg~~dg-~I~iwd~~~~-------------- 914 (1058)
|....|..|+-+|+.+.+- +..++.. ..++.++.|+|-.+..+++...|+ .-.++.+.+.
T Consensus 334 LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~t 413 (1202)
T KOG0292|consen 334 LFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGT 413 (1202)
T ss_pred EEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCC
Confidence 4444578888888877432 3333332 246778888884444444433333 2223332110
Q ss_pred -e-e-------EEEE---------eCCCC----------CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeec
Q 001534 915 -E-V-------KTKL---------KGHQN----------RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA 966 (1058)
Q Consensus 915 -~-~-------~~~l---------~~h~~----------~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 966 (1058)
. . ...+ ++-.+ .+..+-+.-+|.+|+. ....|.++|++..+.+.. +
T Consensus 414 G~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~--~~~~v~lfdvQq~~~~~s----i 487 (1202)
T KOG0292|consen 414 GEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLR--SPDSVTLFDVQQKKKVGS----I 487 (1202)
T ss_pred CCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEEE--cCCeEEEEEeecceEEEE----E
Confidence 0 0 0000 11111 2233444445554442 234588999988664432 1
Q ss_pred CCCCCCCCCCeeEEEEcCCCcEEEEEeCCeEEEEeCCCCeeeEEee-ccccceEEccCCcEEEEEE
Q 001534 967 PAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSVSF-LSLCPYVFGVSSIFLLSTL 1031 (1058)
Q Consensus 967 ~~~~~~~~~~v~~~~fs~d~~~l~~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~s~~~~~l~~~~ 1031 (1058)
.. ..|.-+.||+|..+++.-.-.+|.|.+-+.+.+.++.. ..+.+-+|..+|-+|.+.+
T Consensus 488 ~~------s~vkyvvws~dm~~vAll~Kh~i~i~~kkL~l~~sihEtiriksgawde~gVfiYtT~ 547 (1202)
T KOG0292|consen 488 KV------SKVKYVVWSNDMSRVALLSKHTITIADKKLELLCSIHETIRIKSGAWDEDGVFIYTTL 547 (1202)
T ss_pred ec------CceeEEEEcCccchhhhcccceEEEEecchhheecchheeEeeeceeccCceEEEEeh
Confidence 11 34789999999999888788899999998777777655 5577777777777776543
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=290.14 Aligned_cols=281 Identities=18% Similarity=0.266 Sum_probs=254.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~ 424 (1058)
.+..|++++|+.+|. +||+|+.||.++||+...+.... +..|+++|.++.|+.+|.+|+
T Consensus 234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~l~~t--------------------l~~HkgPI~slKWnk~G~yil 292 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDGNLIST--------------------LGQHKGPIFSLKWNKKGTYIL 292 (524)
T ss_pred ccCCcceEEecCCCC-eEEEeecCcEEEEEecCchhhhh--------------------hhccCCceEEEEEcCCCCEEE
Confidence 457899999999997 89999999999999988654332 677999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEE
Q 001534 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1058)
Q Consensus 425 ~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~ 504 (1058)
+++.|+++.+||..++.... .+.-|..+-.++.|-.+.. +++++.|+.|+|+-+...+++.++.+|.+.|.++.
T Consensus 293 S~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 293 SGGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred eccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 99999999999999987665 5556888878899987665 89999999999999999999999999999999999
Q ss_pred ecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCC---------CEEEEEecCCCCCceEEEeeCC
Q 001534 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG---------TRLFSCGTSKEGESHLVEWNES 575 (1058)
Q Consensus 505 ~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~~~~~~~~i~~wd~~ 575 (1058)
|+|.. .+|+++|.|+++++|.+........+..|...|+.+.|+|+| ..+++++. +++|++||+.
T Consensus 367 ~n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~ 440 (524)
T KOG0273|consen 367 WNPTG--SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVE 440 (524)
T ss_pred ECCCC--ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEcc
Confidence 99654 899999999999999999888888999999999999999975 35777764 8899999999
Q ss_pred CCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCc
Q 001534 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1058)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1058)
.|.++..|..|.. +|.+++|+|+|+++++|+.||.|.+|+..+++..+.....+ .|..++|+-+|..|..+..||.
T Consensus 441 ~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 441 SGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred CCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCC
Confidence 9999999999988 99999999999999999999999999999999999987654 4899999999999999999999
Q ss_pred EEEEECC
Q 001534 656 IKILANS 662 (1058)
Q Consensus 656 i~iw~~~ 662 (1058)
+.+.|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9999874
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=280.83 Aligned_cols=294 Identities=18% Similarity=0.275 Sum_probs=263.9
Q ss_pred ccceeEeec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEE
Q 001534 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1058)
Q Consensus 336 ~~~~~~~~~-h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 414 (1058)
+.+..+.+. |.+.|.|+++.|.++ ++++|+.|++|+|||+.+|+...+ +.||-..|..+
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~v 199 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRGV 199 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheeeee
Confidence 445555566 999999999999987 899999999999999999987764 78999999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEee
Q 001534 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1058)
Q Consensus 415 ~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~ 494 (1058)
++|+--.||.+++.|+.|+-||+...+.++ .+.||-+.|.|++..|.-+ +|+||+.|.+++|||+++...+..+.
T Consensus 200 avS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~ 274 (460)
T KOG0285|consen 200 AVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLS 274 (460)
T ss_pred eecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEec
Confidence 999999999999999999999999998888 6779999999999999988 89999999999999999999999999
Q ss_pred CCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeC
Q 001534 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1058)
Q Consensus 495 ~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1058)
||..+|.++.+.+.. ..+++||.|++|++||+..++....+..|...+.+++.+|....+++++. ..|+.|++
T Consensus 275 GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~-----dnik~w~~ 347 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP-----DNIKQWKL 347 (460)
T ss_pred CCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-----ccceeccC
Confidence 999999999988754 57999999999999999999999999999999999999999999999873 34999999
Q ss_pred CCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEec---C---CCCCCcceEEEeCCCCEEE
Q 001534 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA---D---GGLPASPRLRFNKEGSLLA 648 (1058)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~~~v~~~~~s~~~~~l~ 648 (1058)
..|..+..+.+|.. .+++++...|+ ++++|+++|.+.+||.++|...+.... . .....|.+.+|...|..|+
T Consensus 348 p~g~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rli 425 (460)
T KOG0285|consen 348 PEGEFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLI 425 (460)
T ss_pred Cccchhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEE
Confidence 99999999999888 89999998775 889999999999999999876655521 1 1234688999999999999
Q ss_pred EEECCCcEEEEECCC
Q 001534 649 VTTSDNGIKILANSD 663 (1058)
Q Consensus 649 ~~~~dg~i~iw~~~~ 663 (1058)
+|..|.+|++|.-..
T Consensus 426 t~eadKtIk~~keDe 440 (460)
T KOG0285|consen 426 TGEADKTIKMYKEDE 440 (460)
T ss_pred eccCCcceEEEeccc
Confidence 999999999997543
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=273.33 Aligned_cols=329 Identities=14% Similarity=0.196 Sum_probs=275.1
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEE
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd 483 (1058)
|..|+.+|.+++.+|+.+++|||+.|....+|++.++.... .+.+|+..|+++.||.||. +||||+.+|.|+||.
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEE
Confidence 67899999999999999999999999999999999998555 7889999999999999999 999999999999999
Q ss_pred cCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001534 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1058)
Q Consensus 484 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1058)
..+|.....+...-..+.-+.|||. +.+|+.|+.||.+.+|.+.+......+.+|..++++=.|.|+|+.++++..
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~--a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-- 210 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPR--AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-- 210 (399)
T ss_pred cccCceEEEeecccCceEEEEeccc--ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec--
Confidence 9999998888766778888999974 489999999999999999998888899999999999999999999999974
Q ss_pred CCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecC------CCCCC---
Q 001534 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD------GGLPA--- 634 (1058)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~--- 634 (1058)
+++|++||+.+++++..+....+....++.++..+..++.|..++.+++-+..+|+.+...... .+...
T Consensus 211 --dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 211 --DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred --CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 8899999999999999998776667888999999999999999999999999888877766531 00111
Q ss_pred cceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCC
Q 001534 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714 (1058)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1058)
|-.+.++..-.+.|+|+-||+|.|||+...
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-------------------------------------------------- 318 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAAS-------------------------------------------------- 318 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccc--------------------------------------------------
Confidence 222223333344455555555555554322
Q ss_pred CCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccc
Q 001534 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 794 (1058)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 794 (1058)
T Consensus 319 -------------------------------------------------------------------------------- 318 (399)
T KOG0296|consen 319 -------------------------------------------------------------------------------- 318 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEECCCceE
Q 001534 795 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKV 873 (1058)
Q Consensus 795 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~~ 873 (1058)
.+ +. .-. | ..+|+.+.|-+ ..+|+++. +|.|++||..+|++
T Consensus 319 ----------~~----------------------R~--~c~--h-e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 319 ----------TL----------------------RH--ICE--H-EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL 360 (399)
T ss_pred ----------hh----------------------he--ecc--C-CCceEEEEEcC-cchheeeccCceEEeeeccccce
Confidence 00 00 001 5 77788888887 56677776 99999999999999
Q ss_pred EEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcc
Q 001534 874 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 912 (1058)
Q Consensus 874 ~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~ 912 (1058)
+.++.||...|.+++++| ++++++|++.|++.+||++.
T Consensus 361 ~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 361 KFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 999999999999999999 99999999999999999864
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=279.70 Aligned_cols=545 Identities=12% Similarity=0.138 Sum_probs=371.9
Q ss_pred CCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecC-cCCeEEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001534 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1058)
Q Consensus 407 h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~ 485 (1058)
-..+|.++||+.+.+.||.+-.||.|.+|++..+=... ..+.++ ...|.+++|++.++ |.+.+.+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCCe---EEeecCCceEEEEecc
Confidence 35689999999999999999999999999998854332 345554 45799999996554 8889999999999999
Q ss_pred CCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEE--ecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001534 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1058)
Q Consensus 486 ~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1058)
++++...+....+.|++++.+|.. ..++.|++||.+..++...+..... +....+.+.+++|+|++..+++|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence 999999999999999999999765 7899999999777777766555443 4445679999999999999999985
Q ss_pred CCCceEEEeeCCCCceeEeecC-----C--CCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcc
Q 001534 564 EGESHLVEWNESEGAIKRTYSG-----F--RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1058)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~-----~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1058)
|+.|++||..++..+..... . ...-|.++.|-.+ ..+++|...|+|.+||...+.+++.+..+.. .|.
T Consensus 175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl 249 (691)
T KOG2048|consen 175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL 249 (691)
T ss_pred --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence 88999999999887662211 1 1224667777655 5799999999999999999999999887765 699
Q ss_pred eEEEeCCCCEEEEEECCCcEEEEECCCCcee---eecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCC
Q 001534 637 RLRFNKEGSLLAVTTSDNGIKILANSDGVRL---LRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 713 (1058)
Q Consensus 637 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1058)
+++.++++.++++++.|+.|..|...++... ......|...+..
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs--------------------------------- 296 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRS--------------------------------- 296 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCccccee---------------------------------
Confidence 9999999999999999999999988766331 1111112111110
Q ss_pred CCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeecc
Q 001534 714 DRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN 793 (1058)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 793 (1058)
+. ..+...+..+.|..+.+-........ . |. .-..-|.+..+.+...+
T Consensus 297 --------~a---------v~~~~l~sgG~d~~l~i~~s~~~~~~---------~--h~----~~~~~p~~~~v~~a~~~ 344 (691)
T KOG2048|consen 297 --------MA---------VIENALISGGRDFTLAICSSREFKNM---------D--HR----QKNLFPASDRVSVAPEN 344 (691)
T ss_pred --------ee---------eecceEEecceeeEEEEccccccCch---------h--hh----ccccccccceeecCccc
Confidence 00 00111222233333333322210000 0 11 00111222222222222
Q ss_pred ceEEEEEcccCCCCCCCcccccccccccCCCCC---------CccccccCCCCCCCCCeeEEEEccCCcEEEEEeCCeEE
Q 001534 794 AVHKLWKWQRTERNPSGKATANVAPQLWQPPSG---------TLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVS 864 (1058)
Q Consensus 794 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~sdg~i~ 864 (1058)
..+.+|.-. .+.+|.+.+. .+.....++ ...|.+.|.||||++||.+.=..++
T Consensus 345 ~L~~~w~~h--------------~v~lwrlGS~~~~g~~~~~~Llkl~~k~----~~nIs~~aiSPdg~~Ia~st~~~~~ 406 (691)
T KOG2048|consen 345 RLLVLWKAH--------------GVDLWRLGSVILQGEYNYIHLLKLFTKE----KENISCAAISPDGNLIAISTVSRTK 406 (691)
T ss_pred eEEEEeccc--------------cccceeccCcccccccChhhheeeecCC----ccceeeeccCCCCCEEEEeeccceE
Confidence 233333111 1222322222 122223444 6789999999999999999878889
Q ss_pred EEECCCceEEEEe-----cCCCCCeEEEEEeCCCCCEEEEEe-CCCeEEEEEcccce--eEEEE--eCCCCCeEEEEEcC
Q 001534 865 LFNMMTFKVMTMF-----MSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRVDE--VKTKL--KGHQNRITGLAFSP 934 (1058)
Q Consensus 865 iwd~~~~~~~~~~-----~~~~~~i~~l~~s~~~~~~lasg~-~dg~I~iwd~~~~~--~~~~l--~~h~~~v~~l~~sp 934 (1058)
||.++.-..+... ....-....+.|+- ++..++.++ .+..+.++++.+.. .+..+ ++....|..+..||
T Consensus 407 iy~L~~~~~vk~~~v~~~~~~~~~a~~i~fti-d~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss 485 (691)
T KOG2048|consen 407 IYRLQPDPNVKVINVDDVPLALLDASAISFTI-DKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS 485 (691)
T ss_pred EEEeccCcceeEEEeccchhhhccceeeEEEe-cCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC
Confidence 9988752222221 12233567788998 566666666 77788888877653 22222 23567899999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcC-CCcEEEEE-eCCeEEEEeCCCCeeeEEee
Q 001534 935 TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVV-HESQISVYDSKLECSRSVSF 1012 (1058)
Q Consensus 935 d~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~-d~~~l~~~-~d~~i~vwd~~~~~~~~~~~ 1012 (1058)
||+|||..+.+|.|.+|++++++.... ..... ..|+.++|+| +.+.|+++ .++.+.-||++.+.+..+..
T Consensus 486 dG~yiaa~~t~g~I~v~nl~~~~~~~l--~~rln------~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~ 557 (691)
T KOG2048|consen 486 DGNYIAAISTRGQIFVYNLETLESHLL--KVRLN------IDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSK 557 (691)
T ss_pred CCCEEEEEeccceEEEEEcccceeecc--hhccC------cceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhh
Confidence 999999999999999999999763311 11222 3489999996 44556665 89999999994333444322
Q ss_pred --------------ccccceEEccCCcEEEEEECCCeEEEEcCCCCCccCCcccccccc
Q 001534 1013 --------------LSLCPYVFGVSSIFLLSTLTKLSVAVHDPLMKFDRKRKVPWRGVK 1057 (1058)
Q Consensus 1013 --------------~~~~~~~~s~~~~~l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~ 1057 (1058)
..+..+.|++..+..+......-+.+.|...+++..+..+-++.|
T Consensus 558 ~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~a~w~~~id~~~~lp~~~~~~~~~~~ 616 (691)
T KOG2048|consen 558 NNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYDAHWSCLIDFSLPLPSDEDGPLKALK 616 (691)
T ss_pred ccccccccChhhcCCCCceEEeCCCCccEEEEEcCcEEEEEecCCCCCchhhcccccCC
Confidence 125566777777777777778888888888888877777766554
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=273.95 Aligned_cols=480 Identities=15% Similarity=0.209 Sum_probs=352.4
Q ss_pred cccCCcceeeecCCCCCcc---------------eecCCccccceeEeec-CCCCeeEEEEecC--CCeEEEEE-eCCCc
Q 001534 310 IRTGQSDEVSFAGVAHTPN---------------VYSQDDLTKTVVRTLN-QGSNVMSMDFHPQ--QQTILLVG-TNVGD 370 (1058)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~-h~~~V~~~~fspd--g~~lla~g-~~dg~ 370 (1058)
.+.+.+-+++.+|+.-.++ +-.||..+-.-+..+. ....|+|++||+- |..+++.- +.+..
T Consensus 102 GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~ 181 (626)
T KOG2106|consen 102 GHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHM 181 (626)
T ss_pred CCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccc
Confidence 3444556666666443322 2335555555555555 5789999999974 34333332 34567
Q ss_pred EEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeee
Q 001534 371 ISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEID 450 (1058)
Q Consensus 371 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 450 (1058)
+.|||++.+..... .+.....|....|+|.+..|+.....+.+..|+.+++...+....++
T Consensus 182 lSVWdWqk~~~~~~-------------------vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fe 242 (626)
T KOG2106|consen 182 LSVWDWQKKAKLGP-------------------VKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFE 242 (626)
T ss_pred cchhhchhhhccCc-------------------ceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccc
Confidence 89999998776553 33456678999999988777777788899999999988776665666
Q ss_pred cCc-CCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCC
Q 001534 451 AHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529 (1058)
Q Consensus 451 ~h~-~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~ 529 (1058)
.+. ..|.|++|.++|+ ++||..+|.|.||+..+.+..+....|.+.|.+++... +| .|++|+.|+.|..|| .
T Consensus 243 k~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr--~G-tllSGgKDRki~~Wd-~ 315 (626)
T KOG2106|consen 243 KREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR--DG-TLLSGGKDRKIILWD-D 315 (626)
T ss_pred cccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEec--Cc-cEeecCccceEEecc-c
Confidence 543 5799999999998 89999999999999988887777779999999999874 33 677799999999999 4
Q ss_pred CCCceE--EecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEe
Q 001534 530 YLGSRV--DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1058)
Q Consensus 530 ~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1058)
.-+.+. ++....+.+..++=...+ ++.+.. .+.|..=.+.++-. ....+|.. ....++.+|+.+.+++++
T Consensus 316 ~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTt----rN~iL~Gt~~~~f~-~~v~gh~d-elwgla~hps~~q~~T~g 387 (626)
T KOG2106|consen 316 NYRKLRETELPEQFGPIRTVAEGKGD--ILVGTT----RNFILQGTLENGFT-LTVQGHGD-ELWGLATHPSKNQLLTCG 387 (626)
T ss_pred cccccccccCchhcCCeeEEecCCCc--EEEeec----cceEEEeeecCCce-EEEEeccc-ceeeEEcCCChhheeecc
Confidence 433333 334445577777643322 555553 44454444444332 34456665 788899999999999999
Q ss_pred CCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCC
Q 001534 608 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (1058)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1058)
.|+.+++|+ ..++..+.... .++.++.|+|.| .+|.|+..|...+.|.++. .++...
T Consensus 388 qdk~v~lW~--~~k~~wt~~~~---d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~~---------------- 444 (626)
T KOG2106|consen 388 QDKHVRLWN--DHKLEWTKIIE---DPAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTIH---------------- 444 (626)
T ss_pred CcceEEEcc--CCceeEEEEec---CceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEEE----------------
Confidence 999999999 44555554433 257899999999 9999999999999998774 222111
Q ss_pred CCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecC
Q 001534 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 767 (1058)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~ 767 (1058)
T Consensus 445 -------------------------------------------------------------------------------- 444 (626)
T KOG2106|consen 445 -------------------------------------------------------------------------------- 444 (626)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEE
Q 001534 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1058)
Q Consensus 768 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~ 847 (1058)
....+++++.|+|+|.+|+.++.|+.|++|.+..+ |..+...-+. + ..+|+.+.
T Consensus 445 --~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~---------------------g~~y~r~~k~--~-gs~ithLD 498 (626)
T KOG2106|consen 445 --TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN---------------------GRKYSRVGKC--S-GSPITHLD 498 (626)
T ss_pred --ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC---------------------CcEEEEeeee--c-CceeEEee
Confidence 02457889999999999999999999999987632 2222211111 4 57899999
Q ss_pred EccCCcEEEEEe-CCeEEEEECCCceEEEE-----------------e-cCCCCCeEEEEEeCCCCCEEEEEeCCCeEEE
Q 001534 848 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTM-----------------F-MSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 908 (1058)
Q Consensus 848 ~s~d~~~la~~s-dg~i~iwd~~~~~~~~~-----------------~-~~~~~~i~~l~~s~~~~~~lasg~~dg~I~i 908 (1058)
||+|++++.+-+ |-.|..|.....+.+.. + ..+...|..++-+. ..+++|+|.+.|+|++
T Consensus 499 wS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~-~~~~lA~gdd~g~v~l 577 (626)
T KOG2106|consen 499 WSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH-CEKLLASGDDFGKVHL 577 (626)
T ss_pred ecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh-hhhhhhccccCceEEE
Confidence 999999999998 88899995432221111 1 12455677788888 8999999999999999
Q ss_pred EEcccce---eEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001534 909 YNVRVDE---VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953 (1058)
Q Consensus 909 wd~~~~~---~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~ 953 (1058)
|...-.+ ....+.+|++.|++++|+-+...|++.+.|..|..|++
T Consensus 578 f~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 578 FSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred EccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 9876433 34567899999999999999999999889999999986
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=288.74 Aligned_cols=284 Identities=20% Similarity=0.318 Sum_probs=249.3
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~ 424 (1058)
..-+|..|.|.|+|++ |++|+..|.+.+|+..+-. | ..++..|..+|.++.|+++|.+++
T Consensus 95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~fn------F-------------EtilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSFN------F-------------ETILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCce-eEeecccccEEEecCceee------H-------------HHHhhhhcccceeEEEccCCCEEE
Confidence 3568999999999986 6789999999999974321 1 123678999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeec-CcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEE
Q 001534 425 VAFSKHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1058)
Q Consensus 425 ~~~~d~~i~vwd~~~~~~~~~~~~~~~-h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~ 503 (1058)
+|+.+|.|++|+..-.... .+.+ |...|++++|||... .++++|.||+|+|||....+....+.||.-.|.++
T Consensus 155 SgD~gG~iKyWqpnmnnVk----~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNNVK----IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhhhH----HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 9999999999998764322 3344 458999999999887 79999999999999999999999999999999999
Q ss_pred EecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEee
Q 001534 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1058)
Q Consensus 504 ~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1058)
.|+|.. ..++++|.|..|++||.+++.++.++..|...|..+.|+|++++|++++ +|..++++|+++.+.++++
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s----kD~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS----KDQSCKVFDIRTMKELFTY 302 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc----CCceEEEEehhHhHHHHHh
Confidence 999876 6999999999999999999999999999999999999999999999998 4888999999999999999
Q ss_pred cCCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECC
Q 001534 584 SGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1058)
Q Consensus 584 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1058)
++|.. .+.++.|+|-. ..|.+|+.||.|..|.+...+++..+.. .+...|.+++|+|=|..|++|+.|.++++|.-.
T Consensus 303 r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 303 RGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred hcchh-hheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99998 89999999965 4566689999999999986666666643 344589999999999999999999999999653
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=265.91 Aligned_cols=252 Identities=16% Similarity=0.284 Sum_probs=218.5
Q ss_pred ccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEE
Q 001534 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1058)
Q Consensus 402 ~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~v 481 (1058)
..+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++.... .....+++|.+.|..+.|.+|+. .+++++.|++|+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEE
Confidence 3478999999999999999999999999999999976543 23337789999999999999999 8999999999999
Q ss_pred EEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEec
Q 001534 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1058)
Q Consensus 482 wd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1058)
||+++|++++.+++|...|+++.....+ -.++.+++.|+++++||++....+.++. ....++++.|..++..+++++-
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg-~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRRG-PQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EecccceeeehhccccceeeecCccccC-CeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc
Confidence 9999999999999999999999844322 2678888999999999999877766554 3457899999999999999986
Q ss_pred CCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCC----CceEEEEecCCCCCC--c
Q 001534 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN----MNMLTTVDADGGLPA--S 635 (1058)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~--v 635 (1058)
|+.|++||++.+.....+.||.+ +|..+..+|+|.++++-+.|.++++||++. .+++..+..+.+.-. .
T Consensus 195 ----dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 195 ----DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred ----cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 66699999999999999999998 999999999999999999999999999874 344666766554433 3
Q ss_pred ceEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001534 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
..++|+|++..+.+|+.|..+++||....
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred ceeeccCCCCccccccccceEEEeecccc
Confidence 46789999999999999999999998654
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=267.29 Aligned_cols=285 Identities=18% Similarity=0.244 Sum_probs=249.1
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCE
Q 001534 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1058)
Q Consensus 343 ~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~ 422 (1058)
.+|++.|+.+.|+|+|. ++|+|+.|..|.+|++.....-. -.+++|++.|..+.|.+|++.
T Consensus 44 ~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d~s~ 104 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRDGSH 104 (338)
T ss_pred CCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccCCCE
Confidence 34899999999999997 89999999999999987543221 126799999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEE
Q 001534 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1058)
Q Consensus 423 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~ 502 (1058)
+++++.|.+|+.||+++|+..+ .+++|..-|+++.-+.-|.. ++.+++.|+++++||+++...++++. ....+++
T Consensus 105 i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltA 179 (338)
T KOG0265|consen 105 ILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTA 179 (338)
T ss_pred EEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeEEE
Confidence 9999999999999999998877 67789999999997666766 88899999999999999998888775 4567899
Q ss_pred EEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCC----Cc
Q 001534 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----GA 578 (1058)
Q Consensus 503 ~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----~~ 578 (1058)
+.|.. .+..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++.+-+. +.++++||.+- .+
T Consensus 180 v~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 180 VGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAPSQR 253 (338)
T ss_pred EEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCCCCc
Confidence 99984 4478999999999999999999999999999999999999999999999875 88899999874 34
Q ss_pred eeEeecCCCCC---ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCc
Q 001534 579 IKRTYSGFRKR---SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1058)
Q Consensus 579 ~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1058)
++..+.++... ....++|+|+++.+-+|+.|..+++||..+...+..+++|.+ .|++++|+|....|.+++.|.+
T Consensus 254 ~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~sdk~ 331 (338)
T KOG0265|consen 254 CVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSSDKT 331 (338)
T ss_pred eEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEeccCce
Confidence 57777776431 345688999999999999999999999999888888887654 7999999999999999999999
Q ss_pred EEEE
Q 001534 656 IKIL 659 (1058)
Q Consensus 656 i~iw 659 (1058)
|.+=
T Consensus 332 i~lg 335 (338)
T KOG0265|consen 332 IYLG 335 (338)
T ss_pred eEee
Confidence 8763
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-33 Score=257.91 Aligned_cols=289 Identities=20% Similarity=0.332 Sum_probs=236.1
Q ss_pred Eeec-CCCCeeEEEEecC-CCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC
Q 001534 341 RTLN-QGSNVMSMDFHPQ-QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1058)
Q Consensus 341 ~~~~-h~~~V~~~~fspd-g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 418 (1058)
+++. |.+.|+.++|+|- |. +||+|+.|..|+||+...+....- ....-.+|+..|.++||+|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp 71 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSP 71 (312)
T ss_pred EeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecC
Confidence 3444 8889999999999 76 899999999999999986332110 1112357999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCC---ceeEEeeC
Q 001534 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQYTFEG 495 (1058)
Q Consensus 419 d~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~---~~~~~l~~ 495 (1058)
.|++||+|+.|.++.||.-..+ .+.....++||...|.|++|+++|. +||+|+.|++|-||.+..+ .++..++.
T Consensus 72 ~g~~La~aSFD~t~~Iw~k~~~-efecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 72 HGRYLASASFDATVVIWKKEDG-EFECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred CCcEEEEeeccceEEEeecCCC-ceeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 9999999999999999987654 4556668999999999999999999 8999999999999998754 46778999
Q ss_pred CCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCC---CCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEe
Q 001534 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY---LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1058)
Q Consensus 496 ~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1058)
|...|..+.|+|.. .+|+++|.|++|++|+-.. -....++.++...|.+++|++.|..|++++ .|++++||
T Consensus 149 HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s----dD~tv~Iw 222 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS----DDGTVSIW 222 (312)
T ss_pred ccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec----CCcceEee
Confidence 99999999999877 6999999999999998763 234678889999999999999999999997 48899999
Q ss_pred eCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc------eEEEEecCCCCCCcceEEEeCC-CC
Q 001534 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN------MLTTVDADGGLPASPRLRFNKE-GS 645 (1058)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~~~~s~~-~~ 645 (1058)
-..+ .+...+...+..+.|. ...+++++.|+.|++|.-...- .+.. ..+.|...|+++.|+|. ..
T Consensus 223 ~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVNsV~w~p~~~~ 294 (312)
T KOG0645|consen 223 RLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVNSVQWNPKVSN 294 (312)
T ss_pred eecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccceEEEcCCCCC
Confidence 8652 2333343478889998 4579999999999999765421 1111 12233448999999994 78
Q ss_pred EEEEEECCCcEEEEECC
Q 001534 646 LLAVTTSDNGIKILANS 662 (1058)
Q Consensus 646 ~l~~~~~dg~i~iw~~~ 662 (1058)
.|+++++||.|++|.+.
T Consensus 295 ~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 295 RLASGGDDGIVNFWELE 311 (312)
T ss_pred ceeecCCCceEEEEEec
Confidence 89999999999999864
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=270.91 Aligned_cols=247 Identities=16% Similarity=0.277 Sum_probs=228.5
Q ss_pred ccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEE
Q 001534 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1058)
Q Consensus 402 ~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~v 481 (1058)
.++.+|.+.|.|+++.|.++++++|+.|++|+|||+.+++... ++.||...|..+++|+-.. |+++++.|+.|+.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKC 219 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKC 219 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEE
Confidence 4578999999999999999999999999999999999987655 8889999999999999888 8999999999999
Q ss_pred EEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEec
Q 001534 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1058)
Q Consensus 482 wd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1058)
||++..+.++.+.||-..|.|++.+|.- +.|++|+.|.++++||+++...+..+.+|...|.++.+.|-...+++++.
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 9999999999999999999999999876 69999999999999999999999999999999999999999999999984
Q ss_pred CCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEe
Q 001534 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1058)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 641 (1058)
|++|++||++.|+....+..|.. .+.+++.+|....+++++.|. |+-|++..|..+..+..+.. -|++++.+
T Consensus 298 ----D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~--iintl~~n 369 (460)
T KOG0285|consen 298 ----DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNA--IINTLSVN 369 (460)
T ss_pred ----CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccc--eeeeeeec
Confidence 88999999999999999988887 899999999999999988774 89999999999998776654 68888888
Q ss_pred CCCCEEEEEECCCcEEEEECCCC
Q 001534 642 KEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 642 ~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
.|+ ++++|++.|.+.+||..++
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcC
Confidence 776 7889999999999999888
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=272.41 Aligned_cols=305 Identities=16% Similarity=0.248 Sum_probs=264.1
Q ss_pred ceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCc
Q 001534 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1058)
Q Consensus 488 ~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1058)
...+.+.+|..+|+.+-|+|.. ..+++++.|++|++||..+++....+.+|...+..++|+..|+++++++. |-
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~--~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs----Dl 172 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSE--ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS----DL 172 (406)
T ss_pred CchhhhhccccceeeeeeccCc--eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC----cc
Confidence 4456777899999999999765 68899999999999999999998899999999999999999999999985 55
Q ss_pred eEEEeeCCC-CceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCE
Q 001534 568 HLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1058)
Q Consensus 568 ~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 646 (1058)
.+.+||..+ .++++...+|.. .|.+++|-|.|.++++++.|.+|+.|++.++..+.++..|.. -|..++.+.||..
T Consensus 173 ~~~LWd~~~~~~c~ks~~gh~h-~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e--wvr~v~v~~DGti 249 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCIKSLIGHEH-GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE--WVRMVRVNQDGTI 249 (406)
T ss_pred chhheeHHHHHHHHHHhcCccc-ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH--hEEEEEecCCeeE
Confidence 599999886 567777888877 899999999999999999999999999999999999998866 6889999999999
Q ss_pred EEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccC
Q 001534 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (1058)
Q Consensus 647 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1058)
+|+++.|.++++|-+.++ .+...++.
T Consensus 250 ~As~s~dqtl~vW~~~t~-~~k~~lR~----------------------------------------------------- 275 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATK-QCKAELRE----------------------------------------------------- 275 (406)
T ss_pred EEecCCCceEEEEEeccc-hhhhhhhc-----------------------------------------------------
Confidence 999999999999998776 33333322
Q ss_pred CCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCC
Q 001534 727 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 806 (1058)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~ 806 (1058)
|+..|.+++|.|...+ ....+
T Consensus 276 --------------------------------------------hEh~vEci~wap~~~~--~~i~~------------- 296 (406)
T KOG0295|consen 276 --------------------------------------------HEHPVECIAWAPESSY--PSISE------------- 296 (406)
T ss_pred --------------------------------------------cccceEEEEecccccC--cchhh-------------
Confidence 5566777777775430 00000
Q ss_pred CCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEECCCceEEEEecCCCCCeE
Q 001534 807 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT 885 (1058)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~ 885 (1058)
..+ ... .+.++.+++ |++|++||+.++.++-++.+|.+.|.
T Consensus 297 --------------------------at~----~~~--------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr 338 (406)
T KOG0295|consen 297 --------------------------ATG----STN--------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR 338 (406)
T ss_pred --------------------------ccC----CCC--------CccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence 000 111 567889999 99999999999999999999999999
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001534 886 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953 (1058)
Q Consensus 886 ~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~ 953 (1058)
.++|+| +|++|+++.+|+++++||++++++...+..|..-|+++.|..+..+++||+-|.++++|.-
T Consensus 339 ~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 339 GVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999 9999999999999999999999999999999999999999999999999999999999963
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=308.97 Aligned_cols=286 Identities=20% Similarity=0.353 Sum_probs=251.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcc--ccccCcceeecccccccccccccccCCCcCeEEEEECCCCCE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE--RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~ 422 (1058)
+...|.|+.|||+|+ .+++++.++.+++|+..+++ .... +.+|...|.+++|+||+++
T Consensus 158 ~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeEECCCCcE
Confidence 478999999999998 58889999999999997666 2221 4789999999999999999
Q ss_pred EEEEeCCCeEEEEEec-CCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeE
Q 001534 423 LGVAFSKHIVHLYTYN-PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1058)
Q Consensus 423 l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~ 501 (1058)
+++++.|++|+|||+. .+..++ ++.+|...|++++|+|+++ ++++|+.|++|+|||+++++++..+.+|...|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 9999999999999994 334444 8889999999999999996 899999999999999999999999999999999
Q ss_pred EEEecccCCccEEEEEeCCCeEEEEeCCCCCc--eEEecCCCC--cEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCC
Q 001534 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1058)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~--~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1058)
+++|++ ++.+|++++.|+.|++||+.++.. ...+..+.. .++++.|+|+++++++++. ++.+++||+..+
T Consensus 293 ~~~f~~--d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFSP--DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSG 366 (456)
T ss_pred EEEECC--CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCC
Confidence 999985 558999999999999999999883 344444443 5999999999999999984 778999999999
Q ss_pred ceeEeecCCCCC--ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEE--CC
Q 001534 578 AIKRTYSGFRKR--SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT--SD 653 (1058)
Q Consensus 578 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d 653 (1058)
.....+.+|... .+.+...++.+.++++|+.|+.|++||+.++..+..+..|. ...+..+.++|...++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999999874 34445567889999999999999999999999999998885 45788999999999999998 68
Q ss_pred CcEEEEECC
Q 001534 654 NGIKILANS 662 (1058)
Q Consensus 654 g~i~iw~~~ 662 (1058)
+.+++|...
T Consensus 446 ~~~~~w~~~ 454 (456)
T KOG0266|consen 446 GLIRLWKYD 454 (456)
T ss_pred ceEEEecCC
Confidence 899999753
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=269.93 Aligned_cols=295 Identities=17% Similarity=0.310 Sum_probs=233.2
Q ss_pred ccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEE
Q 001534 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1058)
Q Consensus 402 ~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~v 481 (1058)
.++..|...|.-+.||++|++||+++.|.+..+|++.....+...+++.+|..+|..+.||||.+ ++++|+.|..+.+
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~l 295 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSL 295 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheee
Confidence 34788999999999999999999999999999999988777777789999999999999999999 8999999999999
Q ss_pred EEcCCCceeEEeeC-CCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEe
Q 001534 482 WDVVAGRKQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1058)
Q Consensus 482 wd~~~~~~~~~l~~-~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1058)
||+.+|.+.+.+.. +...+.+++|. |||..+++|+
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~--------------------------------------------pDg~~~V~Gs 331 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWC--------------------------------------------PDGFRFVTGS 331 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEc--------------------------------------------cCCceeEecC
Confidence 99999998776642 23444455544 4444444444
Q ss_pred cCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEE
Q 001534 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1058)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1058)
. |+.+..||+. |+......+-....|.+++..+||+++++.+.|..|++++.++......+..+ .+|+++..
T Consensus 332 ~----dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~---~~its~~i 403 (519)
T KOG0293|consen 332 P----DRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE---QPITSFSI 403 (519)
T ss_pred C----CCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc---CceeEEEE
Confidence 2 3445555543 33344444444447899999999999999999999999999876665555433 36899999
Q ss_pred eCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCc
Q 001534 641 NKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720 (1058)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1058)
|.|++++++.-.+..+++||++.. .+++...||..
T Consensus 404 S~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq-------------------------------------------- 438 (519)
T KOG0293|consen 404 SKDGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQ-------------------------------------------- 438 (519)
T ss_pred cCCCcEEEEEcccCeeEEeecchh-hHHHHhhcccc--------------------------------------------
Confidence 999999999999999999999855 44444444421
Q ss_pred cccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEE
Q 001534 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWK 800 (1058)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~ 800 (1058)
|.+++-++
T Consensus 439 ---------------------------------------------------------------~~fiIrSC--------- 446 (519)
T KOG0293|consen 439 ---------------------------------------------------------------GHFIIRSC--------- 446 (519)
T ss_pred ---------------------------------------------------------------cceEEEec---------
Confidence 11111111
Q ss_pred cccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEECCCceEEEEecC
Q 001534 801 WQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS 879 (1058)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~ 879 (1058)
+.+ + |.+++|+|+ |+.|+||+..+++++.++.|
T Consensus 447 --------------------------------Fgg--~------------~~~fiaSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 447 --------------------------------FGG--G------------NDKFIASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred --------------------------------cCC--C------------CcceEEecCCCceEEEEEccCCceeEeecC
Confidence 111 2 668999999 99999999999999999999
Q ss_pred CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEccc
Q 001534 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1058)
Q Consensus 880 ~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~ 913 (1058)
|...|+|++|+|.+..++|+|++||+|+||....
T Consensus 481 Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 481 HSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999999998999999999999999998653
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-29 Score=262.61 Aligned_cols=549 Identities=14% Similarity=0.150 Sum_probs=380.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~ 424 (1058)
.+.+|.|+|||.+.+ .||.|-.+|.|.||++..+=... ..+..+....|.+++|+ ++..|.
T Consensus 24 ~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~~-----------------~vi~g~~drsIE~L~W~-e~~RLF 84 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFLE-----------------PVIHGPEDRSIESLAWA-EGGRLF 84 (691)
T ss_pred eccceEEEEEeccCC-ceeeeccCCcEEEEccCCCceee-----------------EEEecCCCCceeeEEEc-cCCeEE
Confidence 357899999999997 58889999999999998753221 11123456789999999 556677
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeE--EeeCCCCCeEE
Q 001534 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYS 502 (1058)
Q Consensus 425 ~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~--~l~~~~~~v~~ 502 (1058)
+.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|++||.+..++...++..+ .|....+.|.+
T Consensus 85 S~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLs 159 (691)
T KOG2048|consen 85 SSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLS 159 (691)
T ss_pred eecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEEE
Confidence 88899999999999987665 6667788999999999998 78999999988888887777654 44456689999
Q ss_pred EEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecC--------CCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeC
Q 001534 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--------PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1058)
Q Consensus 503 ~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1058)
+.|+++ +..+++|+.||.|++||...+........ ...-|.++.|-.++ .+++| |..|+|.+||.
T Consensus 160 lsw~~~--~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sg----DS~G~V~FWd~ 232 (691)
T KOG2048|consen 160 LSWNPT--GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASG----DSAGTVTFWDS 232 (691)
T ss_pred EEecCC--ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEe----cCCceEEEEcc
Confidence 999964 47899999999999999998887662211 22357788887555 45555 35889999999
Q ss_pred CCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCce--EEEEecCCCCCCcceEEEeCCCCEEEEEEC
Q 001534 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1058)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 652 (1058)
..|.++..+..|.. .|.+++..+++.+++++|.|+.|.-+...++.. +.......+...|.+++..++ .+++|+.
T Consensus 233 ~~gTLiqS~~~h~a-dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~ 309 (691)
T KOG2048|consen 233 IFGTLIQSHSCHDA-DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGR 309 (691)
T ss_pred cCcchhhhhhhhhc-ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecce
Confidence 99999999999988 899999999999999999999999888776543 122222233347889998877 8999999
Q ss_pred CCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCcc
Q 001534 653 DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSR 732 (1058)
Q Consensus 653 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1058)
|.++.+-..... ....|...... ........
T Consensus 310 d~~l~i~~s~~~-----~~~~h~~~~~~--------------------------------------------p~~~~v~~ 340 (691)
T KOG2048|consen 310 DFTLAICSSREF-----KNMDHRQKNLF--------------------------------------------PASDRVSV 340 (691)
T ss_pred eeEEEEcccccc-----Cchhhhccccc--------------------------------------------cccceeec
Confidence 988877544321 11111100000 00111222
Q ss_pred ccCCccccccccccccccccCCcCCc-----cceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCC
Q 001534 733 LVDVKPRVAEDVDKIKSWRIPDISDP-----SQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERN 807 (1058)
Q Consensus 733 ~~~~~~~~~~~~~~v~~w~~~~~~~~-----~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~ 807 (1058)
.+..+.++.-.+..+.+|.+...... ...-.+..+ ....|.+.+.||+|+.++.+.- ...++|.+....
T Consensus 341 a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k---~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~-- 414 (691)
T KOG2048|consen 341 APENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTK---EKENISCAAISPDGNLIAISTV-SRTKIYRLQPDP-- 414 (691)
T ss_pred CccceEEEEeccccccceeccCcccccccChhhheeeecC---CccceeeeccCCCCCEEEEeec-cceEEEEeccCc--
Confidence 33444445555677888887765222 111222222 4567899999999997776653 456777665311
Q ss_pred CCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe--CCeEEEEECCCce--EEEEec--CCC
Q 001534 808 PSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFK--VMTMFM--SPP 881 (1058)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s--dg~i~iwd~~~~~--~~~~~~--~~~ 881 (1058)
.. ++-..+. ... . ......+.|+-|+..++.++ ...+.++++.+.. .+..+. +-.
T Consensus 415 ---~v------k~~~v~~------~~~---~-~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~ 475 (691)
T KOG2048|consen 415 ---NV------KVINVDD------VPL---A-LLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKC 475 (691)
T ss_pred ---ce------eEEEecc------chh---h-hccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCC
Confidence 00 0000000 011 1 34567788998888887776 5778888887543 222222 245
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcccc
Q 001534 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLK 960 (1058)
Q Consensus 882 ~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~sp-d~~~l~s~s~D~~i~iwd~~~~~~~~ 960 (1058)
..|+.++.|| +|++||+.+.+|.|.+|++.+++.......-...|++++|+| +...|+.+..|+.+.-+|++..+...
T Consensus 476 ~~I~~l~~Ss-dG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ 554 (691)
T KOG2048|consen 476 PSISRLVVSS-DGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTR 554 (691)
T ss_pred CcceeEEEcC-CCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhh
Confidence 6799999999 999999999999999999998875444434458899999995 56779999999999999995433111
Q ss_pred ceee---ecCCCCCCCCCCeeEEEEcCCCcEEEEE-eCCeEEEEeC
Q 001534 961 SRFI---QAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS 1002 (1058)
Q Consensus 961 ~~~~---~~~~~~~~~~~~v~~~~fs~d~~~l~~~-~d~~i~vwd~ 1002 (1058)
.... ..+.........+..+.|.|..+..+.. +.+.+.+.|.
T Consensus 555 ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~a~w~~~id~ 600 (691)
T KOG2048|consen 555 WSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYDAHWSCLIDF 600 (691)
T ss_pred hhhccccccccChhhcCCCCceEEeCCCCccEEEEEcCcEEEEEec
Confidence 1111 0111111112457888898877666655 4455666665
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=297.73 Aligned_cols=247 Identities=17% Similarity=0.337 Sum_probs=227.5
Q ss_pred CCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCC----------------------------ceeeeeeeecCcCCeEE
Q 001534 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG----------------------------ELRQHLEIDAHVGGVND 458 (1058)
Q Consensus 407 h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~----------------------------~~~~~~~~~~h~~~v~~ 458 (1058)
-...++|..|++|++.||.|..|..|++|.+...+ ......++.+|.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 44579999999999999999999999999987311 01112357899999999
Q ss_pred EEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEec
Q 001534 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538 (1058)
Q Consensus 459 ~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~ 538 (1058)
+.|+|+.+ +|+++|.|++|++|.+.+..++..++||..+|+.+.|+|. |-+++|+|.|++-++|..+...+...+.
T Consensus 457 ~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~--GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR--GYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC--ceEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999 8999999999999999999999999999999999999954 6899999999999999999999999999
Q ss_pred CCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001534 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1058)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 618 (1058)
+|-..|.|+.|+|++.|+++|+. |.++++||..+|..++.|.||.+ +|.+++|+|+|++|++|+.||.|.+||+.
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred ccccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 99999999999999999999975 88899999999999999999998 99999999999999999999999999999
Q ss_pred CCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001534 619 NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
+++++..+..|. +.|.++.|+.||..||+|+.|++|++||+...
T Consensus 608 ~~~~v~~l~~Ht--~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 608 NGSLVKQLKGHT--GTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCcchhhhhccc--CceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999998884 47999999999999999999999999998654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=248.01 Aligned_cols=288 Identities=14% Similarity=0.219 Sum_probs=247.9
Q ss_pred ccceeEeec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEE
Q 001534 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1058)
Q Consensus 336 ~~~~~~~~~-h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 414 (1058)
|.+.+..++ +.++|.++.|+-||+ +..+++.|.+|++|+...|..+++ +.+|..+|..+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~ 65 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDA 65 (307)
T ss_pred cchhceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCceeeec
Confidence 444556666 789999999999998 566677899999999999998876 78999999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCC--CceeEE
Q 001534 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--GRKQYT 492 (1058)
Q Consensus 415 ~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~--~~~~~~ 492 (1058)
+.+.|+..+++|+.|..|.+||+.+|+..+ .+.+|.+.|+.+.|+.+.. .+++|+.|.++++||.++ .++++.
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccch
Confidence 999999999999999999999999998888 7889999999999999988 999999999999999976 467888
Q ss_pred eeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEe
Q 001534 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1058)
Q Consensus 493 l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1058)
+......|.++..+. +.|++|+.||++|.||++.+.....+ .+.+|+++.|++|++..++++. ++++++.
T Consensus 141 ldea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlrLl 210 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLRLL 210 (307)
T ss_pred hhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceeeec
Confidence 888888999998762 68999999999999999987655443 4568999999999999988875 8889999
Q ss_pred eCCCCceeEeecCCCCCc-eeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEE
Q 001534 573 NESEGAIKRTYSGFRKRS-LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1058)
Q Consensus 573 d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 651 (1058)
|-.+|+++..+++|.... -..++++.....+++|++||.|++||+.....+..+..+... .+..++++|.-..++++.
T Consensus 211 Dk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v-~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV-IVTDLSCHPTMDDFITAT 289 (307)
T ss_pred ccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce-eEEeeecccCccceeEec
Confidence 999999999999997632 234667777789999999999999999999999998877552 478999999877777776
Q ss_pred CCCcEEEEE
Q 001534 652 SDNGIKILA 660 (1058)
Q Consensus 652 ~dg~i~iw~ 660 (1058)
.. .+..|.
T Consensus 290 ~~-~~~~~~ 297 (307)
T KOG0316|consen 290 GH-GDLFWY 297 (307)
T ss_pred CC-ceecee
Confidence 54 455554
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=275.35 Aligned_cols=241 Identities=17% Similarity=0.265 Sum_probs=215.1
Q ss_pred CCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCC
Q 001534 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1058)
Q Consensus 407 h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~ 486 (1058)
-+.+|..+.|.|+|+.|++|+..|.+.+|+..+ +.....+++|..+|+++.|+++|. .+++|+.+|.|++|+..-
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCce---eeHHHHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccch
Confidence 456899999999999999999999999999744 222225678999999999999999 899999999999999654
Q ss_pred CceeEEeeCCC-CCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001534 487 GRKQYTFEGHE-APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1058)
Q Consensus 487 ~~~~~~l~~~~-~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1058)
. .++.+.+|. ..|++++|+|+. ..++++++||+|+|||....++...+.+|+-.|.++.|+|....+++++ .
T Consensus 170 n-nVk~~~ahh~eaIRdlafSpnD--skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgs----k 242 (464)
T KOG0284|consen 170 N-NVKIIQAHHAEAIRDLAFSPND--SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGS----K 242 (464)
T ss_pred h-hhHHhhHhhhhhhheeccCCCC--ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEcc----C
Confidence 4 445555554 899999999843 7999999999999999999999999999999999999999999999997 3
Q ss_pred CceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeC-CC
Q 001534 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EG 644 (1058)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~ 644 (1058)
|+.|++||.++|.++.++.+|.. .|..+.|+|++++|+++|.|..++++|+++.+.+..+..|.. .+.+++|+| ..
T Consensus 243 DnlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~ 319 (464)
T KOG0284|consen 243 DNLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNE 319 (464)
T ss_pred CceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh--hheeeccccccc
Confidence 67899999999999999999998 899999999999999999999999999999888988887765 799999999 67
Q ss_pred CEEEEEECCCcEEEEECC
Q 001534 645 SLLAVTTSDNGIKILANS 662 (1058)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~ 662 (1058)
.+|.+|+.||.|..|.+.
T Consensus 320 ~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 320 SLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred cceeeccCCCceEEEecc
Confidence 789999999999999875
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=268.84 Aligned_cols=601 Identities=15% Similarity=0.186 Sum_probs=352.0
Q ss_pred cccCCCcCeEEEEECC-CCCEEEEEeCCCeEEEEEecCCCce---eeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCc
Q 001534 403 LLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1058)
Q Consensus 403 ~~~~h~~~v~~~~~sp-d~~~l~~~~~d~~i~vwd~~~~~~~---~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~ 478 (1058)
++.+|...|+.+.|+| +..+||+|+.|..|+||.+..+-.. .....+.+..-.|.++.|+|.... +++++ ..|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~s~-a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILASG-AHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEEec-cCce
Confidence 3788999999999999 6778999999999999999854221 111123333457899999998875 45544 5889
Q ss_pred EEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCc-eEEecCCCC-cEEEEEEcCCCCEE
Q 001534 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGN-WCTMMAYSADGTRL 556 (1058)
Q Consensus 479 v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~-~~~~~~~~~-~v~~~~~s~~~~~l 556 (1058)
++|||+.+++.+..+.+|...|.+..|+ .||.++++++.|..|++||.+.... +....+|++ .-..+.|..+-..|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~Ws--eDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWS--EDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhccccc--cCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 9999999999999999999999999998 6779999999999999999987544 444555554 44567887777788
Q ss_pred EEEecCCCCCceEEEeeCCC-CceeEeecCCCCCceeEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEE----------
Q 001534 557 FSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLT---------- 624 (1058)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~---------- 624 (1058)
++.+.+...-..+++||.+. +..++++.-.....+..--|.||.++++.+| .+.++..+.+...++..
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle~ 309 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLEE 309 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcchh
Confidence 88777666677899999875 3455555444333455556889988877765 67778887775432110
Q ss_pred ----------------------EEe--------------------cC---------------------CCCCCcceEEEe
Q 001534 625 ----------------------TVD--------------------AD---------------------GGLPASPRLRFN 641 (1058)
Q Consensus 625 ----------------------~~~--------------------~~---------------------~~~~~v~~~~~s 641 (1058)
.++ .| +....+..+...
T Consensus 310 ~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvSl~ 389 (1012)
T KOG1445|consen 310 QTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVSLA 389 (1012)
T ss_pred hhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccccccC
Confidence 000 00 000011112221
Q ss_pred CCCC-------------EEEEEECCCcEEEEECCCCceeeecc-------cCCc--------cccc---CCCCCCCCC-C
Q 001534 642 KEGS-------------LLAVTTSDNGIKILANSDGVRLLRML-------EGRA--------MDKN---RCPSEPISS-K 689 (1058)
Q Consensus 642 ~~~~-------------~l~~~~~dg~i~iw~~~~~~~~~~~~-------~~~~--------~~~~---~~~~~~~~~-~ 689 (1058)
|..+ .++.. ..-+.+.-........... ..+. ..+. ..+.+.... .
T Consensus 390 Pa~r~h~~~pp~~~P~p~~a~t--~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~ 467 (1012)
T KOG1445|consen 390 PAQRSHSPPPPEPVPTPKVAQT--PSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVH 467 (1012)
T ss_pred chhccCCCCCCCCCCCcccccC--CCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhcccccccccCcc
Confidence 1000 00000 0011111000000000000 0000 0000 000000000 0
Q ss_pred CccccccCCCcccccccCCCCCCCC------------------------CCCCCccccccC----CCCCccccCCccccc
Q 001534 690 PLTINALGPASNVSAAIAPTLERPD------------------------RGPPAVSISSLG----TIDGSRLVDVKPRVA 741 (1058)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 741 (1058)
...-..........++...++.... ...|......+. ......+...-.-..
T Consensus 468 ~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s 547 (1012)
T KOG1445|consen 468 TPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKS 547 (1012)
T ss_pred CCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccccccccccc
Confidence 0000000000000000000000000 001100000000 000000000000000
Q ss_pred cccccccccccCCcCCcc------ceeEE--ecCCCcCcCceEEEEEccCCceEE--EeeccceEEEEEcccCCCCCCCc
Q 001534 742 EDVDKIKSWRIPDISDPS------QIKAL--RLPDSIAASKVVRLIYTNSGLSLL--ALASNAVHKLWKWQRTERNPSGK 811 (1058)
Q Consensus 742 ~~~~~v~~w~~~~~~~~~------~~~~~--~~~~~~~~~~i~~l~~s~~g~~l~--~~~~dg~i~vw~~~~~~~~~~~~ 811 (1058)
+--|.+.-+.-..+.... ..+.+ .+|+ .. . -|..+.++++ ..+..|.|-||++...-..|+|.
T Consensus 548 ~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~Pg--Es---n--Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv 620 (1012)
T KOG1445|consen 548 CVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPG--ES---N--GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGV 620 (1012)
T ss_pred eeeccchheeeccCccccchhhhhhhhcccccCCC--cc---C--ceeeccceEEEEecCCCceEEEEEcCCCCCCCccc
Confidence 000222222111111100 00111 1111 11 1 1233344444 34557899999998776666655
Q ss_pred ccccccccccCCCCCCccccccCCCCCCCCCeeEEEEcc-CCcEEEEEe-CCeEEEEECCCc-------eEEEEecCCCC
Q 001534 812 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSAS-GGKVSLFNMMTF-------KVMTMFMSPPP 882 (1058)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~-d~~~la~~s-dg~i~iwd~~~~-------~~~~~~~~~~~ 882 (1058)
+.. +. + ...|+.++|.| |...||++. ||.|++|.+..+ ..-..+..|..
T Consensus 621 ~p~------------------l~---N-gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 621 MPG------------------LF---N-GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred ccc------------------cc---c-CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 432 11 2 67799999999 788899888 899999999754 34456788999
Q ss_pred CeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccce
Q 001534 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR 962 (1058)
Q Consensus 883 ~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~ 962 (1058)
.|+++.|+|--..+||+++.|-+|++||+.+++....+.+|.+.|..++|||||+.+||++.||+|++|+-.+++..
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p--- 755 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP--- 755 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc---
Confidence 99999999977789999999999999999999999999999999999999999999999999999999999887633
Q ss_pred eeecCCCCCCCCCCeeEEEEcCCCcEEEE-Ee----CCeEEEEeC-CC--CeeeEEee---ccccceEEccCCcEE-EEE
Q 001534 963 FIQAPAGRQSPLVGETKVQFHNDQTHLLV-VH----ESQISVYDS-KL--ECSRSVSF---LSLCPYVFGVSSIFL-LST 1030 (1058)
Q Consensus 963 ~~~~~~~~~~~~~~v~~~~fs~d~~~l~~-~~----d~~i~vwd~-~~--~~~~~~~~---~~~~~~~~s~~~~~l-~~~ 1030 (1058)
+..-.+... ..-..+.|..||+++++ |- ...|.+||. +. ..+....- .+..-..+.+|...| +++
T Consensus 756 -v~Eg~gpvg--tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltG 832 (1012)
T KOG1445|consen 756 -VYEGKGPVG--TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTG 832 (1012)
T ss_pred -cccCCCCcc--CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEec
Confidence 111122111 23367899999999887 43 456999999 33 23222211 112233445666665 555
Q ss_pred ECCCeEEEEcCCCC
Q 001534 1031 LTKLSVAVHDPLMK 1044 (1058)
Q Consensus 1031 ~~d~~v~vw~~~~~ 1044 (1058)
-.|..|.+|+++..
T Consensus 833 KGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 833 KGDRFVNMYEVIYE 846 (1012)
T ss_pred CCCceEEEEEecCC
Confidence 55999999987654
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-31 Score=244.53 Aligned_cols=243 Identities=17% Similarity=0.301 Sum_probs=206.3
Q ss_pred cccCCCcCeEEEEECCC-CCEEEEEeCCCeEEEEEecCCCceeeeeee-ecCcCCeEEEEEecCCCceEEEEEcCCCcEE
Q 001534 403 LLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEI-DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1058)
Q Consensus 403 ~~~~h~~~v~~~~~spd-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~ 480 (1058)
.+.+|.+.+..++|+|- |..||+|+.|+.|++|+..++........+ .+|+..|++++|+|.|+ +|+++|.|.++.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~~ 86 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATVV 86 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceEE
Confidence 36789999999999998 999999999999999999865444433333 37999999999999999 899999999999
Q ss_pred EEEcCCC--ceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCc---eEEecCCCCcEEEEEEcCCCCE
Q 001534 481 VWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTR 555 (1058)
Q Consensus 481 vwd~~~~--~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~ 555 (1058)
||.-..+ +++.++.||...|.+++|+. +|.+|++++.|+.|-+|.+..... ...++.|...|..+.|+|....
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~--sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSA--SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcC--CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 9974433 67889999999999999995 568999999999999999885443 4478889999999999999999
Q ss_pred EEEEecCCCCCceEEEeeCC---CCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCC
Q 001534 556 LFSCGTSKEGESHLVEWNES---EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (1058)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1058)
|++++. |++|++|+-. .-.++.++.+|+. .|.+++|++.|..|+++++|++++||-..+ .+.. .+.
T Consensus 165 L~S~SY----DnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~-~~s 233 (312)
T KOG0645|consen 165 LFSCSY----DNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSG-MHS 233 (312)
T ss_pred eEEecc----CCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeeecc-----Ccch-hcc
Confidence 999986 8889999766 3468899999998 899999999999999999999999998652 1211 223
Q ss_pred CCcceEEEeCCCCEEEEEECCCcEEEEECC
Q 001534 633 PASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1058)
Q Consensus 633 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1058)
..++.++|. ...|++++.|+.|++|.-.
T Consensus 234 r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 234 RALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred cceEeeeec--ccceEeccCCCEEEEEEec
Confidence 467888998 5589999999999999654
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=280.24 Aligned_cols=294 Identities=17% Similarity=0.264 Sum_probs=249.6
Q ss_pred cccceeEeec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccC-ccccccCcceeecccccccccccccccCCCcCeE
Q 001534 335 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1058)
Q Consensus 335 ~~~~~~~~~~-h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 412 (1058)
.|.+.+.++. |...|+++.|.|-.-.|+++|+.|+.|+||++.. ++++++ +.+|..+|.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~Vr 262 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPVR 262 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh-------------------hhcchhhhh
Confidence 3566777777 9999999999994335999999999999999987 666654 789999999
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEE
Q 001534 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1058)
Q Consensus 413 ~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 492 (1058)
+++|+++|..+++++.|+.|++||+++|+++.. +. ....++|+.|.||+.+ .+++|+.|+.|+.||+++++.++.
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 999999999999999999999999999987763 32 3457899999999965 888999999999999999999999
Q ss_pred eeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEE-ecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEE
Q 001534 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1058)
Q Consensus 493 l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1058)
+..|-+.|..+.|-+ +|..+++.++|+++++|+.+.+-.+.. .........++..+|+++++++-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F~~--~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFVD--EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEEcc--CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 999999999999985 558999999999999999987665443 3334557789999999999998764 788999
Q ss_pred eeCCCC---ceeEeecCCCCC-ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeC-CCCE
Q 001534 572 WNESEG---AIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSL 646 (1058)
Q Consensus 572 wd~~~~---~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 646 (1058)
+..... .....+.+|... .-..+.|||||.+|++|+.||.+.+||.++-+++..++.|.. .+..+.|+| ....
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcce
Confidence 986532 234456777542 345688999999999999999999999999999999988844 789999999 5678
Q ss_pred EEEEECCCcEEEEE
Q 001534 647 LAVTTSDNGIKILA 660 (1058)
Q Consensus 647 l~~~~~dg~i~iw~ 660 (1058)
+|+++.||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999995
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=266.87 Aligned_cols=274 Identities=21% Similarity=0.314 Sum_probs=235.1
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEE
Q 001534 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1058)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~ 425 (1058)
...|+|+.+..+ .+++|..|++|+|||..+..++.. +.||++.|.|+.| |.+.|++
T Consensus 197 skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqy--d~rviis 252 (499)
T KOG0281|consen 197 SKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQY--DERVIVS 252 (499)
T ss_pred CCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeec--cceEEEe
Confidence 468999999643 478999999999999999877663 8899999999999 6679999
Q ss_pred EeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCc---eeEEeeCCCCCeEE
Q 001534 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR---KQYTFEGHEAPVYS 502 (1058)
Q Consensus 426 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~---~~~~l~~~~~~v~~ 502 (1058)
|+.|.+|+|||+++++++. ++-+|...|..+.|+. . +++|++.|.++.+||+.... +.+.+.||...|+.
T Consensus 253 GSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~n--g--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNv 325 (499)
T KOG0281|consen 253 GSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSN--G--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 325 (499)
T ss_pred cCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeC--C--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheee
Confidence 9999999999999998887 7789999999999974 3 79999999999999998765 33567899999999
Q ss_pred EEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEe
Q 001534 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1058)
Q Consensus 503 ~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1058)
+.|+. +++++++.|.+|++|++.+.+.+.++.+|...|.++.+ .++++++|+. |.+|++||+..|.+++.
T Consensus 326 Vdfd~----kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLRv 395 (499)
T KOG0281|consen 326 VDFDD----KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLRV 395 (499)
T ss_pred ecccc----ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHHH
Confidence 99862 69999999999999999999999999999999988876 5788888874 88899999999999999
Q ss_pred ecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEE-------EecCCCCCCcceEEEeCCCCEEEEEECCCc
Q 001534 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT-------VDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1058)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1058)
+.||.. -|.++.|. .+.+++|+.||+|++||+..+..-.. .....+.+.|..+.|. ...+++++.|.+
T Consensus 396 LeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddt 470 (499)
T KOG0281|consen 396 LEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDT 470 (499)
T ss_pred HhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCe
Confidence 999998 89999996 57899999999999999987653311 1122334467777774 667899999999
Q ss_pred EEEEECCCCc
Q 001534 656 IKILANSDGV 665 (1058)
Q Consensus 656 i~iw~~~~~~ 665 (1058)
|.|||+.++.
T Consensus 471 ILiWdFl~~~ 480 (499)
T KOG0281|consen 471 ILIWDFLNGP 480 (499)
T ss_pred EEEEEcCCCC
Confidence 9999998773
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=280.84 Aligned_cols=283 Identities=24% Similarity=0.403 Sum_probs=251.1
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEE
Q 001534 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1058)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l 423 (1058)
.|.++|++++|+|+++ ++++|+.||.|.+|++.+++.... +..|...+.++.|+|+++++
T Consensus 7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCCCCEE
Confidence 3889999999999997 788888999999999998764332 56788899999999999999
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEE
Q 001534 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1058)
Q Consensus 424 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~ 503 (1058)
++++.||.|++|++.+++... .+..|...+.++.|+++++ ++++++.|+.|.+||+.+++....+..|...+.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999875555 6668888999999999977 78888889999999999999999999999999999
Q ss_pred EecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEee
Q 001534 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1058)
Q Consensus 504 ~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1058)
+|++. +.++++++.|+.|++||++..+....+..+...+.++.|+|+++.+++++. ++.+++||+++++.+..+
T Consensus 142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecch
Confidence 99975 478888888999999999988888888888889999999999999998874 788999999999988888
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEE
Q 001534 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1058)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 660 (1058)
..+.. .+.+++|+|++.++++++.+|.|++||+.+++....+..+. ..+.+++|+|++.++++++.||.+++|+
T Consensus 216 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC--CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77776 89999999998888888889999999999988888887543 4799999999999999999999999995
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=274.95 Aligned_cols=293 Identities=18% Similarity=0.332 Sum_probs=249.4
Q ss_pred eeeeecCcCCeEEEEEec-CCCceEEEEEcCCCcEEEEEcCC-CceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeE
Q 001534 446 HLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523 (1058)
Q Consensus 446 ~~~~~~h~~~v~~~~fs~-d~~~~~l~s~~~d~~v~vwd~~~-~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i 523 (1058)
...+.+|+..|+++.|.| .+. +|++++.|+.|+||++.. +++++++.+|..+|.+++|+ .+|..++++|.|+.|
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~h--LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s--~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGH--LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFN--NCGTSFLSASFDRFL 282 (503)
T ss_pred eeeccCCccccchhhhccceee--EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcc--ccCCeeeeeecceee
Confidence 447889999999999999 565 899999999999999987 89999999999999999998 456899999999999
Q ss_pred EEEeCCCCCceEEecCCCCcEEEEEEcCCC-CEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCE
Q 001534 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR 602 (1058)
Q Consensus 524 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 602 (1058)
++||.++++....+.. ...++++.|.|++ +.+++|+. ++.|+.||+++++.++.+..|-+ .|..+.|-++|++
T Consensus 283 KlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~s----d~ki~~wDiRs~kvvqeYd~hLg-~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGS----DKKIRQWDIRSGKVVQEYDRHLG-AILDITFVDEGRR 356 (503)
T ss_pred eeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecC----CCcEEEEeccchHHHHHHHhhhh-heeeeEEccCCce
Confidence 9999999999888764 4477899999999 55666654 88899999999999999998888 8999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCC
Q 001534 603 FLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (1058)
Q Consensus 603 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 682 (1058)
+++.++|++++||+....-.+..+.... ...+.++..+|++.+++.-+.|+.|.++.+....+.-. .
T Consensus 357 FissSDdks~riWe~~~~v~ik~i~~~~-~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk------k------ 423 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIPVPIKNIADPE-MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK------K------ 423 (503)
T ss_pred EeeeccCccEEEEEcCCCccchhhcchh-hccCcceecCCCCCeehhhccCceEEEEecccccccCH------h------
Confidence 9999999999999999887776654332 23678999999999999999999999997643311000 0
Q ss_pred CCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCcccee
Q 001534 683 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 762 (1058)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~ 762 (1058)
T Consensus 424 -------------------------------------------------------------------------------- 423 (503)
T KOG0282|consen 424 -------------------------------------------------------------------------------- 423 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCC
Q 001534 763 ALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEES 842 (1058)
Q Consensus 763 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 842 (1058)
..++++.- .+-
T Consensus 424 --------------------------------------------------------------------K~feGh~v-aGy 434 (503)
T KOG0282|consen 424 --------------------------------------------------------------------KRFEGHSV-AGY 434 (503)
T ss_pred --------------------------------------------------------------------hhhcceec-cCc
Confidence 00111001 344
Q ss_pred eeEEEEccCCcEEEEEe-CCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 001534 843 AACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1058)
Q Consensus 843 i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd 910 (1058)
-..+.|||||++|++|+ ||.+.+||..+.+++..+++|...+..+.|+|.....+|+++.||.|++||
T Consensus 435 s~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 435 SCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 55789999999999998 999999999999999999999999999999998888999999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.1e-30 Score=287.86 Aligned_cols=258 Identities=24% Similarity=0.395 Sum_probs=227.4
Q ss_pred CCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEc-
Q 001534 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV- 484 (1058)
Q Consensus 406 ~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~- 484 (1058)
.|...|.++.|+++|+.+++++.|+.+++|+..+... .....+.+|...|.+++|+|+++ ++++++.|++|++||+
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeecc
Confidence 3578999999999999999999999999999977662 12226679999999999999999 8999999999999999
Q ss_pred CCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001534 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1058)
Q Consensus 485 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1058)
..+..++++.+|...|++++|+|.+ +.+++|+.|++|++||+++++....+..|...|++++|+++++++++++.
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p~g--~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~--- 308 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSPDG--NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY--- 308 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecCCC--CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC---
Confidence 5568999999999999999999654 89999999999999999999999999999999999999999999999964
Q ss_pred CCceEEEeeCCCCc--eeEeecCCCCC-ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCC-CCcceEEE
Q 001534 565 GESHLVEWNESEGA--IKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL-PASPRLRF 640 (1058)
Q Consensus 565 ~~~~i~~wd~~~~~--~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~ 640 (1058)
|+.|++||+.++. +...+.++... .+.+++|+|++.++++++.|+.+++||+..+.....+..+... ..+.+...
T Consensus 309 -d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~ 387 (456)
T KOG0266|consen 309 -DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL 387 (456)
T ss_pred -CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccc
Confidence 8889999999999 67788887775 6999999999999999999999999999999999988877653 23445556
Q ss_pred eCCCCEEEEEECCCcEEEEECCCCceeeecccC
Q 001534 641 NKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1058)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 673 (1058)
++.+.++++|+.|+.|.+|+..++ .....+.+
T Consensus 388 ~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~ 419 (456)
T KOG0266|consen 388 STGGKLIYSGSEDGSVYVWDSSSG-GILQRLEG 419 (456)
T ss_pred cCCCCeEEEEeCCceEEEEeCCcc-chhhhhcC
Confidence 789999999999999999999876 44444433
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-30 Score=235.48 Aligned_cols=248 Identities=18% Similarity=0.260 Sum_probs=222.1
Q ss_pred cccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEE
Q 001534 401 NALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1058)
Q Consensus 401 ~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~ 480 (1058)
..++..|.++|.++.|+-||+|.++++.|.+|++|+...+..++ ++.+|...|..++.+.|+. .+++|+.|+.+.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~ 84 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQ 84 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEE
Confidence 34578899999999999999999999999999999999998877 8889999999999999998 699999999999
Q ss_pred EEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCC--CceEEecCCCCcEEEEEEcCCCCEEEE
Q 001534 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1058)
Q Consensus 481 vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1058)
+||+.+|+.++.+.+|.+.|+.+.|+. +...+++|+.|.++++||-++. +++..+......|.++..+ +..+++
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIva 160 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVA 160 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEe
Confidence 999999999999999999999999984 4489999999999999998764 4556666677788888874 556777
Q ss_pred EecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceE
Q 001534 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1058)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1058)
++. ||+++.||++.|+....+-++ +|++++|+++++..++++.|+++++.|-.+|+++..+.+|.....-..+
T Consensus 161 GS~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 161 GSV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred ecc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 764 888999999999987777766 8999999999999999999999999999999999999988776555677
Q ss_pred EEeCCCCEEEEEECCCcEEEEECCCC
Q 001534 639 RFNKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 639 ~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
+++.....+++|+.||.|.+||+...
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccc
Confidence 88888899999999999999999876
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=244.15 Aligned_cols=285 Identities=18% Similarity=0.281 Sum_probs=252.4
Q ss_pred ecCCCCeeEEEEec---CCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCC
Q 001534 343 LNQGSNVMSMDFHP---QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1058)
Q Consensus 343 ~~h~~~V~~~~fsp---dg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd 419 (1058)
-.|..+|..++||| +| ++|++++.||.-.+-+=++|..+.+ +.+|++.|.+...+.+
T Consensus 11 ~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l~~n 70 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATLNKN 70 (334)
T ss_pred cCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeecCch
Confidence 34889999999995 77 5899999999999988888887765 7899999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCC-ceeEEeeCCCC
Q 001534 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEA 498 (1058)
Q Consensus 420 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~-~~~~~l~~~~~ 498 (1058)
....|+++.|-+.+|||.-+|..+. .+ .|..-|.+++|+.|.+ +|++|+.++.++|+|++.. .+...+.+|.+
T Consensus 71 a~~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~ghtg 144 (334)
T KOG0278|consen 71 ATRAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGHTG 144 (334)
T ss_pred hhhhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCCCC
Confidence 9999999999999999999998776 43 4888999999999999 7999999999999999875 45678899999
Q ss_pred CeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCc
Q 001534 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1058)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1058)
.|..+.|.... +.|++.+.|++||+||.+++.....+.. ...|+++.++++|+++.++. .+.|..||..+-.
T Consensus 145 ~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~-----gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 145 GIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAY-----GSSVKFWDAKSFG 216 (334)
T ss_pred cceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEec-----CceeEEecccccc
Confidence 99999998543 7899999999999999999998887775 45899999999999998874 4569999999999
Q ss_pred eeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEE
Q 001534 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1058)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 658 (1058)
+++.++... .|.+.+++|+...+++|++|+.++.||..+++.+..+ ..++.++|.|+.|+|+|...++|+.||+|++
T Consensus 217 ~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 217 LLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred ceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCCceEEE
Confidence 998888765 4889999999999999999999999999999999886 2344568999999999999999999999999
Q ss_pred EECCCC
Q 001534 659 LANSDG 664 (1058)
Q Consensus 659 w~~~~~ 664 (1058)
|....+
T Consensus 294 WQt~~~ 299 (334)
T KOG0278|consen 294 WQTTPG 299 (334)
T ss_pred EEecCC
Confidence 998766
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=305.60 Aligned_cols=291 Identities=14% Similarity=0.162 Sum_probs=238.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC-CCCEE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-d~~~l 423 (1058)
|.+.|++++|+|+|+ ++|+|+.|+.|+||++.+...... .. ..+...+ .+...|.+++|+| ++.+|
T Consensus 482 ~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~~----------~~~~~~~-~~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 482 SSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-DI----------HYPVVEL-ASRSKLSGICWNSYIKSQV 548 (793)
T ss_pred CCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-cc----------ccceEEe-cccCceeeEEeccCCCCEE
Confidence 889999999999998 789999999999999864211000 00 0000012 2456899999988 57899
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEec-CCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEE
Q 001534 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1058)
Q Consensus 424 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~-d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~ 502 (1058)
|+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..|.+
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 999999999999999876555 6779999999999997 566 8999999999999999999999888754 67899
Q ss_pred EEecccCCccEEEEEeCCCeEEEEeCCCCC-ceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCC-----
Q 001534 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----- 576 (1058)
Q Consensus 503 ~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----- 576 (1058)
+.|++ +++.++++|+.||.|++||+++.. ....+..|...|.++.|. ++.++++++. |+.|++||++.
T Consensus 623 v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 623 VQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSISGI 696 (793)
T ss_pred EEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCcccc
Confidence 99864 456899999999999999998765 455777888999999997 7888888874 88899999974
Q ss_pred -CceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEec-----------CCCCCCcceEEEeCCC
Q 001534 577 -GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA-----------DGGLPASPRLRFNKEG 644 (1058)
Q Consensus 577 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~~~~s~~~ 644 (1058)
..++..+.+|.. .+.+++|+|+++++++|+.|+.|++|+.....++..+.. ..+...|.+++|+|++
T Consensus 697 ~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~ 775 (793)
T PLN00181 697 NETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS 775 (793)
T ss_pred CCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence 356788888877 789999999999999999999999999876654433221 2223458999999999
Q ss_pred CEEEEEECCCcEEEEEC
Q 001534 645 SLLAVTTSDNGIKILAN 661 (1058)
Q Consensus 645 ~~l~~~~~dg~i~iw~~ 661 (1058)
..|++|+.||.|++|++
T Consensus 776 ~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 776 STLVAANSTGNIKILEM 792 (793)
T ss_pred CeEEEecCCCcEEEEec
Confidence 99999999999999986
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=255.53 Aligned_cols=232 Identities=16% Similarity=0.311 Sum_probs=206.3
Q ss_pred CCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCC
Q 001534 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1058)
Q Consensus 407 h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~ 486 (1058)
....|.|+.+ |...+++|..|.+|+|||.++-.+++ .+.||++.|.|+.|. .+ ++++|+.|.+|++||+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 4457999998 77889999999999999999877766 788999999999994 44 899999999999999999
Q ss_pred CceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCce---EEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001534 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1058)
Q Consensus 487 ~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1058)
|+++.++-+|...|..+.|+. .++++++.|.++.+||+..+..+ ..+.+|...|+.+.|+ .+++++++
T Consensus 267 ge~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsAS--- 337 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS--- 337 (499)
T ss_pred CchhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEec---
Confidence 999999999999999999972 59999999999999999887643 2567888899999986 45898887
Q ss_pred CCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCC
Q 001534 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1058)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1058)
+|.+|++|+..+++.++++.+|.. .|.|+.+ .++++++|+.|.+|++||+..|.++..+.+|.. -|.++.|.
T Consensus 338 -gDRTikvW~~st~efvRtl~gHkR-GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd-- 409 (499)
T KOG0281|consen 338 -GDRTIKVWSTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD-- 409 (499)
T ss_pred -CCceEEEEeccceeeehhhhcccc-cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec--
Confidence 488999999999999999999988 7877776 478999999999999999999999999998866 58899986
Q ss_pred CCEEEEEECCCcEEEEECCCC
Q 001534 644 GSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
.+.+++|+.||+|++||+.++
T Consensus 410 ~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred CceeeeccccceEEEEecccc
Confidence 668999999999999999876
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-29 Score=267.21 Aligned_cols=247 Identities=23% Similarity=0.405 Sum_probs=220.4
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEE
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd 483 (1058)
+.+|.++|++++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+|+++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56899999999999999999999999999999999876444 6678999999999999997 799999999999999
Q ss_pred cCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001534 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1058)
Q Consensus 484 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1058)
+.+++.+..+..|...+.++.|++. +.++++++.|+.+++||+++.+....+..+...+.++.|+|++.++++++
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--- 154 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS--- 154 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc---
Confidence 9998889999999999999999965 47888888899999999998888888888888999999999998888875
Q ss_pred CCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCC
Q 001534 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1058)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1058)
.++.+++||+++++.+..+..+.. .+.+++|+|+++.+++++.++.|++||+..++.+..+..+.. .+.++.|+|+
T Consensus 155 -~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~ 230 (289)
T cd00200 155 -QDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSPD 230 (289)
T ss_pred -CCCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEcCC
Confidence 377899999999998888887766 799999999999999999999999999999888887755433 7899999999
Q ss_pred CCEEEEEECCCcEEEEECCCC
Q 001534 644 GSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
+.++++++.+|.|++|++.++
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCc
Confidence 888888888999999998765
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-31 Score=251.60 Aligned_cols=287 Identities=17% Similarity=0.227 Sum_probs=242.1
Q ss_pred CCCCCccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCCchhhhhhcccCCcceeeecCC
Q 001534 244 VSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGV 323 (1058)
Q Consensus 244 ~~~~~fs~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (1058)
+.++.|||||+||.+. +.+|.|++|+..+.. .-+ .+.|+..|.
T Consensus 216 ~EcA~FSPDgqyLvsg-------SvDGFiEVWny~~GK-lrK---------DLkYQAqd~-------------------- 258 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSG-------SVDGFIEVWNYTTGK-LRK---------DLKYQAQDN-------------------- 258 (508)
T ss_pred hhheeeCCCCceEeec-------cccceeeeehhccch-hhh---------hhhhhhhcc--------------------
Confidence 4578999999999993 479999999888751 111 222232221
Q ss_pred CCCcceecCCccccceeEeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeeccccccccccccc
Q 001534 324 AHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1058)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1058)
.+.+.++|.|+.||.|.. ++|+|+.||.|+||.+.+|.++...
T Consensus 259 ------------------fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKvWri~tG~ClRrF------------------ 301 (508)
T KOG0275|consen 259 ------------------FMMMDDAVLCISFSRDSE-MLASGSQDGKIKVWRIETGQCLRRF------------------ 301 (508)
T ss_pred ------------------eeecccceEEEeecccHH-HhhccCcCCcEEEEEEecchHHHHh------------------
Confidence 123678999999999998 8999999999999999999998752
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEE
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd 483 (1058)
-..|+..|+|+.||.|+..+++++.|.++++.-+++|++++ ++.||.+.|+...|++||. .+++++.||+|++|+
T Consensus 302 drAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK---EfrGHsSyvn~a~ft~dG~--~iisaSsDgtvkvW~ 376 (508)
T KOG0275|consen 302 DRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK---EFRGHSSYVNEATFTDDGH--HIISASSDGTVKVWH 376 (508)
T ss_pred hhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH---HhcCccccccceEEcCCCC--eEEEecCCccEEEec
Confidence 24799999999999999999999999999999999999888 8889999999999999999 799999999999999
Q ss_pred cCCCceeEEeeC--CCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecC---CCCcEEEEEEcCCCCEEEE
Q 001534 484 VVAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PGNWCTMMAYSADGTRLFS 558 (1058)
Q Consensus 484 ~~~~~~~~~l~~--~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~ 558 (1058)
.++++++.+|+. ...+|+++..-|... ..++.+...+++.+-++.. +....+.. .++...+.+.||.|.++++
T Consensus 377 ~KtteC~~Tfk~~~~d~~vnsv~~~PKnp-eh~iVCNrsntv~imn~qG-QvVrsfsSGkREgGdFi~~~lSpkGewiYc 454 (508)
T KOG0275|consen 377 GKTTECLSTFKPLGTDYPVNSVILLPKNP-EHFIVCNRSNTVYIMNMQG-QVVRSFSSGKREGGDFINAILSPKGEWIYC 454 (508)
T ss_pred CcchhhhhhccCCCCcccceeEEEcCCCC-ceEEEEcCCCeEEEEeccc-eEEeeeccCCccCCceEEEEecCCCcEEEE
Confidence 999999988864 566889998888654 6788888899999988753 33333322 3557778899999999999
Q ss_pred EecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 001534 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1058)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 616 (1058)
.+. |+.++.+...+|++.+.+..|.. .+-.++-+|..+.+++-++||.+++|.
T Consensus 455 igE----D~vlYCF~~~sG~LE~tl~VhEk-dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 455 IGE----DGVLYCFSVLSGKLERTLPVHEK-DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred Ecc----CcEEEEEEeecCceeeeeecccc-cccccccCcccchhhhhcccchhhhcC
Confidence 884 88999999999999999999988 677899999999999999999999995
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=298.25 Aligned_cols=271 Identities=14% Similarity=0.193 Sum_probs=217.9
Q ss_pred CCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCC----Cce
Q 001534 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT----GEL 443 (1058)
Q Consensus 368 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~----~~~ 443 (1058)
+|.+++|+..+.+.... .....+..|.+.|.+++|+|+|++||+|+.|+.|+||+.... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~--------------~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKAD--------------LKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEe--------------eccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 67788888876443221 011124569999999999999999999999999999997642 111
Q ss_pred e-eeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCe
Q 001534 444 R-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 522 (1058)
Q Consensus 444 ~-~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~ 522 (1058)
. ....+. +...|.+++|++.... +|++++.||+|++||+.+++.+..+.+|...|++++|++. ++.+|++|+.|++
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 111232 4567999999986443 7999999999999999999999999999999999999863 4579999999999
Q ss_pred EEEEeCCCCCceEEecCCCCcEEEEEEc-CCCCEEEEEecCCCCCceEEEeeCCCCc-eeEeecCCCCCceeEEEEcCCC
Q 001534 523 IKAWLYDYLGSRVDYDAPGNWCTMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTR 600 (1058)
Q Consensus 523 i~~wd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 600 (1058)
|++||++++.....+..+ ..+.++.|+ +++.++++++. ++.|++||++++. .+..+.+|.. .|.++.|. ++
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DS 672 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CC
Confidence 999999988777776644 578899995 57899999874 8889999998765 5667778877 89999997 67
Q ss_pred CEEEEEeCCCeEEEEECCCC------ceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001534 601 NRFLAAGDEFQIKFWDMDNM------NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
.++++++.|++|++||+..+ ..+..+..|. ..+..++|+|++.+|++|+.||.|++|+....
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 89999999999999999743 4566666554 36789999999999999999999999997654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-28 Score=220.27 Aligned_cols=310 Identities=16% Similarity=0.245 Sum_probs=242.2
Q ss_pred cceeEeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEE
Q 001534 337 KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1058)
Q Consensus 337 ~~~~~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 416 (1058)
.+++.++.....|.+++|+|.|. +.|+|+...+.+|.-...-..+.... ......+.....--+.|.+.|.|.+|
T Consensus 23 f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~h----ea~~~pp~v~~kr~khhkgsiyc~~w 97 (350)
T KOG0641|consen 23 FEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAH----EAAKQPPSVLCKRNKHHKGSIYCTAW 97 (350)
T ss_pred eEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccccc----ccccCCCeEEeeeccccCccEEEEEe
Confidence 34667777889999999999998 88999999999988765432221100 00000011111224679999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEec--CCCceeeeeeeecCcCCeEEEEEecC---CCceEEEEEc-CCCcEEEEEcCCCcee
Q 001534 417 GPDGLMLGVAFSKHIVHLYTYN--PTGELRQHLEIDAHVGGVNDIAFAHP---NKQLCIVTCG-DDKMIKVWDVVAGRKQ 490 (1058)
Q Consensus 417 spd~~~l~~~~~d~~i~vwd~~--~~~~~~~~~~~~~h~~~v~~~~fs~d---~~~~~l~s~~-~d~~v~vwd~~~~~~~ 490 (1058)
||+|++||+|+.|.+|++...+ +.+......++.-|.+.|..++|..+ +.. +|++++ .|..|++-|..+|+..
T Consensus 98 s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 98 SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcc
Confidence 9999999999999999987654 33444455577889999999999754 223 566554 5778888899999999
Q ss_pred EEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecC-------CCCcEEEEEEcCCCCEEEEEecCC
Q 001534 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------PGNWCTMMAYSADGTRLFSCGTSK 563 (1058)
Q Consensus 491 ~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1058)
+.+.+|.+.|.++-- -++-++++|+.|.+|++||++-...+.++.. ....|.+++..|.|+.|+++..
T Consensus 177 ~a~sghtghilalys---wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~-- 251 (350)
T KOG0641|consen 177 HALSGHTGHILALYS---WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA-- 251 (350)
T ss_pred eeecCCcccEEEEEE---ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC--
Confidence 999999999998842 2347999999999999999998777765532 2357999999999999999874
Q ss_pred CCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceEEEEecCCCCCCcceEE
Q 001534 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGGLPASPRLR 639 (1058)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~ 639 (1058)
|....+||++.++.++.+..|.. .|.++.|+|...++++++.|..|++-|+... -++.....| ...+..+.
T Consensus 252 --dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh--kdk~i~~r 326 (350)
T KOG0641|consen 252 --DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH--KDKAIQCR 326 (350)
T ss_pred --CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec--cCceEEEE
Confidence 77799999999999999999988 8999999999999999999999999998632 122223333 34677899
Q ss_pred EeCCCCEEEEEECCCcEEEEECC
Q 001534 640 FNKEGSLLAVTTSDNGIKILANS 662 (1058)
Q Consensus 640 ~s~~~~~l~~~~~dg~i~iw~~~ 662 (1058)
|+|..-.+++.+.|.++.+|.+.
T Consensus 327 wh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 327 WHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ecCccceeeeccCcceEEEeccC
Confidence 99999899999999999999764
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=253.31 Aligned_cols=283 Identities=18% Similarity=0.258 Sum_probs=240.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~ 424 (1058)
....|++++|||..++=+|+.+ .-.+.||+..+...... +......|.++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEEE
Confidence 3568999999997654344432 45899999988765542 334567899999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEE
Q 001534 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1058)
Q Consensus 425 ~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~ 504 (1058)
+|+..|.|+|+|.++...++ .+.+|+.+|..+.|+|+++. .+++|+.|+.+++||+.+......+.+|++.|.|.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977654555 67899999999999999887 899999999999999999987668999999999999
Q ss_pred ecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCc-eeEee
Q 001534 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTY 583 (1058)
Q Consensus 505 ~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~ 583 (1058)
|+|.. ++++++||.||.|++||.+.......--.|+.+|.++.+-|.|..+++++ .+.+++||+.+|. .+...
T Consensus 161 ~~~~~-~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPAN-DHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCC-CeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 99864 48999999999999999999865555555888999999999999999986 5569999999665 44444
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEEC
Q 001534 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1058)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 661 (1058)
..|.. .|+|+++..++..|++++-|+.|++||+.+.+.+..+... ++|.+++.+|+++.++.|..+|.+.+-+.
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---GPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---cceeeEEecCCCceEEEecccceeeeehh
Confidence 44666 8999999999999999999999999999999999888765 46999999999999999999998877643
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=244.73 Aligned_cols=295 Identities=18% Similarity=0.331 Sum_probs=245.4
Q ss_pred ecCCccccceeEeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCc
Q 001534 330 YSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI 409 (1058)
Q Consensus 330 ~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 409 (1058)
|.....+.+.+..+.|.+.|.++... ++ .+.+|++||.++|||........ +.||.+
T Consensus 89 Yv~~~~aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~Gk~~~~--------------------~~Ght~ 145 (423)
T KOG0313|consen 89 YVEAITAPKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLKGKSIKT--------------------IVGHTG 145 (423)
T ss_pred EEEecCCCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecCCceEEE--------------------EecCCc
Confidence 33444667778888899999999998 44 67899999999999998544332 689999
Q ss_pred CeEEEEECCCCC---EEEEEeCCCeEEEEEecCCCce-eeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001534 410 SVNRCVWGPDGL---MLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1058)
Q Consensus 410 ~v~~~~~spd~~---~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~ 485 (1058)
+|.+++|--... .+++++.|.++++|.++.++.. .......||...|.+++..++|. .+++|+.|.+++||+..
T Consensus 146 ~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~ 223 (423)
T KOG0313|consen 146 PIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVE 223 (423)
T ss_pred ceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccC
Confidence 999988865333 5999999999999999887542 22223459999999999999999 79999999999999932
Q ss_pred -------------------------CCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCC
Q 001534 486 -------------------------AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1058)
Q Consensus 486 -------------------------~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~ 540 (1058)
++.++-++.||..+|.++.|.+ ...+++++.|.+|+.||+.+++....+..
T Consensus 224 ~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~- 299 (423)
T KOG0313|consen 224 TDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTT- 299 (423)
T ss_pred CCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeec-
Confidence 1235667889999999999986 26899999999999999999988887765
Q ss_pred CCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCc---eeEeecCCCCCceeEEEEcCCCC-EEEEEeCCCeEEEEE
Q 001534 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWD 616 (1058)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd 616 (1058)
...+.++.++|..++|++++. +..+++||.+++. ...++.+|.+ .|.++.|+|... .|++++.|+++++||
T Consensus 300 ~ksl~~i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWD 374 (423)
T KOG0313|consen 300 NKSLNCISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWD 374 (423)
T ss_pred CcceeEeecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEE
Confidence 447899999999999999885 7789999999764 5678899988 999999999765 466799999999999
Q ss_pred CCCCc-eEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEEC
Q 001534 617 MDNMN-MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1058)
Q Consensus 617 ~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 661 (1058)
+++.+ ++..+..|.. .|.++.|+. +..+++|+.|.+|+|+.-
T Consensus 375 vRS~k~plydI~~h~D--Kvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 375 VRSTKAPLYDIAGHND--KVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred eccCCCcceeeccCCc--eEEEEeccC-CceEEeccCcceEEEecc
Confidence 99877 8888887754 789999974 568999999999999864
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=254.60 Aligned_cols=294 Identities=17% Similarity=0.225 Sum_probs=252.5
Q ss_pred CccccceeEeec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCe
Q 001534 333 DDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (1058)
Q Consensus 333 ~~~~~~~~~~~~-h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 411 (1058)
+..|......++ |.+.|..+.|-++.. .|++|+.|..|++|++..++.-. ...+.|..+.|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCCc
Confidence 445555666666 889999999999976 58999999999999998776221 11267888999
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeE
Q 001534 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1058)
Q Consensus 412 ~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~ 491 (1058)
+++.|.++++++++++.|+.+++|+++...... ++.+|+..|+++.|..... .+++|+.|.+|++||+..+.+.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999876555 8889999999999988776 59999999999999999999888
Q ss_pred EeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEE
Q 001534 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1058)
Q Consensus 492 ~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1058)
++.. ...+..|+.+ ...+++|-.|+.|++||.+..........++ .|+++..+++|..+.+++. |..+.+
T Consensus 298 t~l~-~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVLP-GSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred cccc-cccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 7642 3445556554 2578999999999999999999888888766 9999999999999999974 778999
Q ss_pred eeCCCCceeEeecCCC---CCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEE
Q 001534 572 WNESEGAIKRTYSGFR---KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1058)
Q Consensus 572 wd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 648 (1058)
.|+++.+....+.... ....+.+.|||++.|+++|+.||.|+||++.++++...+........|++++|+|.|..++
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 9999988887776532 2247789999999999999999999999999999999998877766799999999999999
Q ss_pred EEECCCcEEEE
Q 001534 649 VTTSDNGIKIL 659 (1058)
Q Consensus 649 ~~~~dg~i~iw 659 (1058)
+++.++.+.+|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 99999999998
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-28 Score=225.35 Aligned_cols=235 Identities=14% Similarity=0.210 Sum_probs=205.3
Q ss_pred cccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEE
Q 001534 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1058)
Q Consensus 403 ~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vw 482 (1058)
.+.||..+++.+.++.+|.+|.+++.|.++.||-..+|+.+. ++.||.+.|+|+....+.+ .++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 378999999999999999999999999999999998888777 8889999999999999998 89999999999999
Q ss_pred EcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeC-----CCeEEEEeCC-------CCCceEEecCCCCcEEEEEEc
Q 001534 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-----DGKIKAWLYD-------YLGSRVDYDAPGNWCTMMAYS 550 (1058)
Q Consensus 483 d~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~-----d~~i~~wd~~-------~~~~~~~~~~~~~~v~~~~~s 550 (1058)
|+++|+++.+++ ...+|..+.|++.+ ++++.... .+.|.++|++ ..++...+..+...++.+.|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999987 56789999998654 56655543 3679999998 344566788888999999999
Q ss_pred CCCCEEEEEecCCCCCceEEEeeCCCCc-eeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecC
Q 001534 551 ADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1058)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1058)
|-+++|++|. .++.|..||+++|. .+.+-..|.. .|+.++++++..++++++.|.+.++||..+.+.++++...
T Consensus 157 ~l~~~ii~Gh----e~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 157 PLGETIIAGH----EDGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred ccCCEEEEec----CCCcEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 9999999997 48889999999985 4555566666 8999999999999999999999999999999999988754
Q ss_pred CCCCCcceEEEeCCCCEEEEEECC
Q 001534 630 GGLPASPRLRFNKEGSLLAVTTSD 653 (1058)
Q Consensus 630 ~~~~~v~~~~~s~~~~~l~~~~~d 653 (1058)
.+|++.+++|-...++.|+..
T Consensus 232 ---~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 232 ---RPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred ---ccccceecccccceEEecCCc
Confidence 479999999988888777654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=273.52 Aligned_cols=306 Identities=17% Similarity=0.260 Sum_probs=250.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEe--CCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~ 422 (1058)
++..|.+++.+|||. .+|+|+ .||.++||+...=-.- ...++.. .+........|.+.|+|+.|+|||++
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDE----KEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccch----hhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 356799999999998 689998 8999999997642100 0011111 12223336789999999999999999
Q ss_pred EEEEeCCCeEEEEEecC---C------------CceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCC
Q 001534 423 LGVAFSKHIVHLYTYNP---T------------GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1058)
Q Consensus 423 l~~~~~d~~i~vwd~~~---~------------~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~ 487 (1058)
||+|+.|+.|.||.... + +..+....+.+|...|.+++|+|++. ++++++.|++|.+||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999873 0 12334557889999999999999999 9999999999999999999
Q ss_pred ceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCC------CCcEEEEEEcCCCCEEEEEec
Q 001534 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GNWCTMMAYSADGTRLFSCGT 561 (1058)
Q Consensus 488 ~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~ 561 (1058)
+.+..+.+|.+.|..+.|.|. |++|++-+.|++|++|+..+-+....+..+ ...+..+.|||||.+|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP~--Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDPI--GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECCc--cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 999999999999999999965 499999999999999997765555544332 336789999999999998876
Q ss_pred CCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCC------C-------C----EEEEEeCCCeEEEEECCCCceEE
Q 001534 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT------R-------N----RFLAAGDEFQIKFWDMDNMNMLT 624 (1058)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~------~-------~----~l~~~~~dg~i~iwd~~~~~~~~ 624 (1058)
-+.+...+.|.+..+.+.-..+-||.. ++.++.|+|. . + .+++|+.|++|.||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 666778899999888888889999999 8999999872 1 1 46678999999999998888877
Q ss_pred EEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001534 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
.+..-.. ..|..++|+|||..|++++.||+|.++.++..
T Consensus 319 vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 6644332 37999999999999999999999999998654
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=231.20 Aligned_cols=290 Identities=16% Similarity=0.298 Sum_probs=246.5
Q ss_pred eEEecCCCCcEEEEEEcC---CCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCC
Q 001534 534 RVDYDAPGNWCTMMAYSA---DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF 610 (1058)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~---~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 610 (1058)
..+..+|..+|..++||| +|-+|++++ .|+.-.+-+-.+|.-+.+|.+|.+ .|.+.+++.+-...++++.|-
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~----kd~~pmlr~g~tgdwigtfeghkg-avw~~~l~~na~~aasaaadf 81 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISAS----KDGKPMLRNGDTGDWIGTFEGHKG-AVWSATLNKNATRAASAAADF 81 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEec----cCCCchhccCCCCCcEEeeeccCc-ceeeeecCchhhhhhhhcccc
Confidence 445567888999999985 888888887 366677778889999999999998 899999988888888899999
Q ss_pred eEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCC
Q 001534 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1058)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1058)
+.++||.-+|..+..+... + -|..++|+.|.++|++|+.+..+||||++........+.
T Consensus 82 takvw~a~tgdelhsf~hk-h--ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~------------------ 140 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFEHK-H--IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEIS------------------ 140 (334)
T ss_pred hhhhhhhhhhhhhhhhhhh-h--eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhc------------------
Confidence 9999999999999888543 3 589999999999999999999999999876533222222
Q ss_pred ccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCc
Q 001534 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 770 (1058)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~ 770 (1058)
+
T Consensus 141 -------------------------------------------------------------------------------g 141 (334)
T KOG0278|consen 141 -------------------------------------------------------------------------------G 141 (334)
T ss_pred -------------------------------------------------------------------------------C
Confidence 2
Q ss_pred CcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEcc
Q 001534 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1058)
Q Consensus 771 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1058)
|.+.|..+.|....+.+++++.|++|++||.. +|..... +.. ..+|+++.+++
T Consensus 142 htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r----------------------Tgt~v~s-L~~----~s~VtSlEvs~ 194 (334)
T KOG0278|consen 142 HTGGIRTVLWCHEDKCILSSADDKTVRLWDHR----------------------TGTEVQS-LEF----NSPVTSLEVSQ 194 (334)
T ss_pred CCCcceeEEEeccCceEEeeccCCceEEEEec----------------------cCcEEEE-Eec----CCCCcceeecc
Confidence 66778888888888999999999999999765 3433332 222 67899999999
Q ss_pred CCcEEEEEeCCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEE-eCCCCCeEE
Q 001534 851 NDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITG 929 (1058)
Q Consensus 851 d~~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l-~~h~~~v~~ 929 (1058)
||++|.++..+.|..||..+..+++.++. ...|.+..++| +..+++.|++|..++.||..+|+.+..+ ++|.++|.|
T Consensus 195 dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhc 272 (334)
T KOG0278|consen 195 DGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHC 272 (334)
T ss_pred CCCEEEEecCceeEEeccccccceeeccC-ccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEE
Confidence 99999999999999999999999888774 45689999999 7889999999999999999999988885 999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001534 930 LAFSPTLNALVSSGADAQLCMWSIDKWE 957 (1058)
Q Consensus 930 l~~spd~~~l~s~s~D~~i~iwd~~~~~ 957 (1058)
+.|||||...|+||+||+|++|.+..++
T Consensus 273 VrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 273 VRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEECCCCceeeccCCCceEEEEEecCCC
Confidence 9999999999999999999999987755
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-28 Score=225.52 Aligned_cols=288 Identities=12% Similarity=0.129 Sum_probs=239.8
Q ss_pred EeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCC
Q 001534 341 RTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1058)
Q Consensus 341 ~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~ 420 (1058)
....|..+++.+.|+.+|. ||.+++.|.++.||-..+|+.+.+ +.||.+.|.|++.+-+.
T Consensus 5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s 64 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDS 64 (327)
T ss_pred ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCc
Confidence 3445999999999999998 899999999999999999998875 78999999999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEc-----CCCcEEEEEcC-------CCc
Q 001534 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-----DDKMIKVWDVV-------AGR 488 (1058)
Q Consensus 421 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~-----~d~~v~vwd~~-------~~~ 488 (1058)
+++++|+.|.++++||+++|+++.... ...+|..+.|+++|+ +++.+. ..+.|.++|++ ..+
T Consensus 65 ~~liTGSAD~t~kLWDv~tGk~la~~k----~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e 138 (327)
T KOG0643|consen 65 KHLITGSADQTAKLWDVETGKQLATWK----TNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEE 138 (327)
T ss_pred ceeeeccccceeEEEEcCCCcEEEEee----cCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence 999999999999999999999876332 567899999999998 344332 34689999987 456
Q ss_pred eeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceE-EecCCCCcEEEEEEcCCCCEEEEEecCCCCCc
Q 001534 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1058)
Q Consensus 489 ~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1058)
+...+..+...++.+.|.|.+ ++|++|..||.|..||.+++.... ....|...|+.+.+++|..++++++. |.
T Consensus 139 p~~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dt 212 (327)
T KOG0643|consen 139 PYLKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DT 212 (327)
T ss_pred ceEEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cc
Confidence 788888899999999999765 899999999999999999976655 45778889999999999999999984 78
Q ss_pred eEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCe--EEEEECCCC------------ceEEEEecCCCCC
Q 001534 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ--IKFWDMDNM------------NMLTTVDADGGLP 633 (1058)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~------------~~~~~~~~~~~~~ 633 (1058)
+-++||..+-+.++++.... ++++.+++|-...++.||.... |.-=+.+.| +.+..++ +|.+
T Consensus 213 takl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk--GHFG 288 (327)
T KOG0643|consen 213 TAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK--GHFG 288 (327)
T ss_pred cceeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc--cccc
Confidence 89999999999999988654 7999999998888888663221 222222222 3344444 4456
Q ss_pred CcceEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001534 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 634 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
+|++++|+|+|+..++|+.||.||+......
T Consensus 289 PINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 289 PINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred CcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 9999999999999999999999999876544
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=220.70 Aligned_cols=274 Identities=15% Similarity=0.224 Sum_probs=238.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC-CCCEE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-d~~~l 423 (1058)
|.+.|.+|+|+-+|. -||+|+.|+++.||++...+.... ....+|.+.|-.++|+| ....+
T Consensus 19 ~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d~~ 80 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPDLF 80 (313)
T ss_pred hhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCcce
Confidence 778999999999998 689999999999999998754432 12678999999999999 56799
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEE
Q 001534 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1058)
Q Consensus 424 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~ 503 (1058)
++++.|.+|++||+..+++... ... .+.-..+.|+|+|+ +++.++.|..|.+.|.++.+.+...+ ..-.++.+
T Consensus 81 atas~dk~ir~wd~r~~k~~~~---i~~-~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~ 153 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGKCTAR---IET-KGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEI 153 (313)
T ss_pred EEecCCceEEEEEeccCcEEEE---eec-cCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceeeee
Confidence 9999999999999999987763 322 33344689999999 89999999999999999888776554 45567888
Q ss_pred EecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEee
Q 001534 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1058)
Q Consensus 504 ~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1058)
+|+. ++++++.....|+|.|......+.+..+..|.....++.|+|+|+++++|+. |..+.+||+..--+++.+
T Consensus 154 ~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 154 SWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERCI 227 (313)
T ss_pred eecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhheee
Confidence 8883 3478888888899999999999999999999999999999999999999985 788999999988888999
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECC
Q 001534 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1058)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1058)
..+.- +|+.++|+.+|++|+++++|..|-|=++++|..+..++..+ +...++|+|...+||.+++|
T Consensus 228 sRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 228 SRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 88877 89999999999999999999999999999999999998664 56899999999999988775
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-28 Score=230.72 Aligned_cols=312 Identities=16% Similarity=0.193 Sum_probs=244.1
Q ss_pred cceeEeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccc-cCcceeecccccccccccccccCCCcCeEEEE
Q 001534 337 KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA-HKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1058)
Q Consensus 337 ~~~~~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 415 (1058)
.+-.+...|.+++.+.+|||||. ++|+|+.|..|+|.|++.--... ...+..-+..+..+. ...+..|..+|+++.
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPv--IRTlYDH~devn~l~ 179 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPV--IRTLYDHVDEVNDLD 179 (430)
T ss_pred cceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCce--EeehhhccCccccee
Confidence 34455556999999999999998 89999999999999997211000 000100111111111 123678999999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEe--
Q 001534 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-- 493 (1058)
Q Consensus 416 ~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l-- 493 (1058)
|+|....|++|+.|++|+++|.......+..+.++ ...+|.++.|+|.|. +++.|....++++||+.+-++...-
T Consensus 180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanP 256 (430)
T KOG0640|consen 180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANP 256 (430)
T ss_pred ecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCc
Confidence 99999999999999999999998765444333333 456899999999999 8899998999999999998876543
Q ss_pred -eCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecC-C-CCcEEEEEEcCCCCEEEEEecCCCCCceEE
Q 001534 494 -EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-P-GNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1058)
Q Consensus 494 -~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~-~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1058)
..|.+.|+++.+++ .|.+.++++.||.|++||--+.+++.++.. | +..|.+..|+.+|+++++.+ .|..++
T Consensus 257 d~qht~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG----~DS~vk 330 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG----KDSTVK 330 (430)
T ss_pred ccccccceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC----Ccceee
Confidence 35899999999985 558999999999999999888887776543 3 34899999999999999987 488999
Q ss_pred EeeCCCCceeEeecCCCCC----ceeEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCC
Q 001534 571 EWNESEGAIKRTYSGFRKR----SLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1058)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 645 (1058)
+|.+.+++++..+.|.... .-+...|+....+++.-. ..+.++-||.++...+..+.. +|.+.+..+.-||.+.
T Consensus 331 LWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 331 LWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEP 409 (430)
T ss_pred eeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCC
Confidence 9999999999999876211 123355777777877755 467899999999887776654 4556899999999999
Q ss_pred EEEEEECCCcEEEEEC
Q 001534 646 LLAVTTSDNGIKILAN 661 (1058)
Q Consensus 646 ~l~~~~~dg~i~iw~~ 661 (1058)
.+.+++.|..+|+|--
T Consensus 410 ~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 410 AFMTCSDDFRARFWYR 425 (430)
T ss_pred ceeeecccceeeeeee
Confidence 9999999999999953
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-27 Score=261.51 Aligned_cols=288 Identities=14% Similarity=0.109 Sum_probs=224.0
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC-CCCEEE
Q 001534 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLG 424 (1058)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-d~~~l~ 424 (1058)
-..|....+++|+.. +++++.+..+..|+...+..+. +....+........+.+|.+.|.+++|+| ++++|+
T Consensus 20 ~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~La 92 (493)
T PTZ00421 20 FLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLF 92 (493)
T ss_pred eeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEE
Confidence 346777778888764 4556677788888876653221 11111222222334789999999999999 899999
Q ss_pred EEeCCCeEEEEEecCCCc----eeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCe
Q 001534 425 VAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1058)
Q Consensus 425 ~~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v 500 (1058)
+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|...|
T Consensus 93 SgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V 171 (493)
T PTZ00421 93 TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQI 171 (493)
T ss_pred EEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCce
Confidence 999999999999986532 1233467899999999999998754 89999999999999999999999999999999
Q ss_pred EEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCc-EEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCc-
Q 001534 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA- 578 (1058)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~- 578 (1058)
.+++|++ +|.+|++++.|++|++||+++++....+..|.+. ...+.|.+++..+++++.++..++.|++||+++..
T Consensus 172 ~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 172 TSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999996 4589999999999999999998888888777654 45778999999998877655568899999998754
Q ss_pred eeEeecCCCCCceeEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCC
Q 001534 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1058)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1058)
+......+....+....|+++++.+++++ .|+.|++||+.+++........ ...++..++|.|.-
T Consensus 250 p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 250 PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPKW 315 (493)
T ss_pred ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEecccc
Confidence 44444434433566678999999999987 5999999999999887765443 22357788888854
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=222.35 Aligned_cols=282 Identities=14% Similarity=0.233 Sum_probs=232.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~ 424 (1058)
..+.|+++.|+++|. ++++++.|.+++|||..+++.+.+ +..++..|..+.|......++
T Consensus 13 ~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEE
Confidence 367899999999998 566788899999999999988764 445677888999988877777
Q ss_pred EEeC--CCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEE
Q 001534 425 VAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1058)
Q Consensus 425 ~~~~--d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~ 502 (1058)
.++. |.+|+.-++.+.+.++ .+.||...|++++.+|-++ .+++++.|++|++||++..++...+.....++
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi-- 145 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI-- 145 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc--
Confidence 7766 8899999999998888 8889999999999999998 89999999999999999888877665444443
Q ss_pred EEecccCCccEEEEEeCCCeEEEEeCCCCC--ceEEecC---CCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCC
Q 001534 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDA---PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1058)
Q Consensus 503 ~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~--~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1058)
++|. +.|-++|++.....|++||++... +...+.. .....+.+.|||||++++.+. ..+.+++.|.-+|
T Consensus 146 ~AfD--p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT----~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 146 AAFD--PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST----NASFIYLLDAFDG 219 (311)
T ss_pred eeEC--CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe----CCCcEEEEEccCC
Confidence 4565 455788888888899999999752 2333333 355889999999999999886 3778999999999
Q ss_pred ceeEeecCCCCCc--eeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCc
Q 001534 578 AIKRTYSGFRKRS--LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1058)
Q Consensus 578 ~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1058)
....++.++.... -...+|.||++++++|+.||+|.+|+++++..+..+... ...++.++.|+|.-.++++++. .
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~s--~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSASS--N 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecCc--e
Confidence 9999988876532 246789999999999999999999999999999999875 3457899999998877777654 6
Q ss_pred EEEEECC
Q 001534 656 IKILANS 662 (1058)
Q Consensus 656 i~iw~~~ 662 (1058)
+.+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 7788554
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-27 Score=241.65 Aligned_cols=608 Identities=14% Similarity=0.156 Sum_probs=344.6
Q ss_pred eEeec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC
Q 001534 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1058)
Q Consensus 340 ~~~~~-h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 418 (1058)
+-.+. |++.|+.+.|||-...|||+|+.|..|+||.+..|.... ...+..++.+..-.|-++.|+|
T Consensus 72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fHp 138 (1012)
T KOG1445|consen 72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFHP 138 (1012)
T ss_pred cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeeccc
Confidence 44444 999999999999776799999999999999998553221 0112233555667889999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCC-CceeEEeeCCC
Q 001534 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGHE 497 (1058)
Q Consensus 419 d~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~-~~~~~~l~~~~ 497 (1058)
...-|...+..|.++|||+.+++.+. ++.+|...|.++.|+.||+ ++++++.|+.|+|||.+. ++.++...+|.
T Consensus 139 TaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H~ 213 (1012)
T KOG1445|consen 139 TADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGHG 213 (1012)
T ss_pred CcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccccc
Confidence 87777777788999999999987665 7889999999999999999 999999999999999875 67888888887
Q ss_pred CC-eEEEEecccCCccEEEEEeCC----CeEEEEeCCCCCceE-EecC-CCCcEEEEEEcCCCCEEEEEecCCCCCceEE
Q 001534 498 AP-VYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRV-DYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1058)
Q Consensus 498 ~~-v~~~~~~~~~~~~~l~s~s~d----~~i~~wd~~~~~~~~-~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1058)
+. -..+.|. ++-..|++.+.+ ..|++||.+...... ++.. ....|.---|.||.+.++.++- ++.+++
T Consensus 214 ~~rdsRv~w~--Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGK---G~~~l~ 288 (1012)
T KOG1445|consen 214 GMRDSRVLWA--GNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGK---GTNKLF 288 (1012)
T ss_pred cchhheeeec--cchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecC---CcceEE
Confidence 64 2334555 333567766654 569999988754332 2222 1224555678899999887763 677788
Q ss_pred EeeCCCCceeEe---------------------------------------------------ecC-C------------
Q 001534 571 EWNESEGAIKRT---------------------------------------------------YSG-F------------ 586 (1058)
Q Consensus 571 ~wd~~~~~~~~~---------------------------------------------------~~~-~------------ 586 (1058)
.+.+...++.-. +.. |
T Consensus 289 ~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p 368 (1012)
T KOG1445|consen 289 MLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEP 368 (1012)
T ss_pred EEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCcc
Confidence 777643221000 000 0
Q ss_pred ----------CCCceeEEEEcCCC-------------CEEEEEeCCCeEEEEECC-------------CCceE-EEEecC
Q 001534 587 ----------RKRSLGVVQFDTTR-------------NRFLAAGDEFQIKFWDMD-------------NMNML-TTVDAD 629 (1058)
Q Consensus 587 ----------~~~~v~~~~~~~~~-------------~~l~~~~~dg~i~iwd~~-------------~~~~~-~~~~~~ 629 (1058)
.+..+..+++.|.. ...+..+ .-+.+.-.. +..+- ..-..-
T Consensus 369 ~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~--sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV 446 (1012)
T KOG1445|consen 369 GCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTP--SFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAV 446 (1012)
T ss_pred CcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCC--CCccccCCCCCCCccccccccccCCCccccCCCc
Confidence 00011112221110 0000000 001111100 00000 000000
Q ss_pred CCCCCcceEEEeCC----C----C--EEEEEECCCcEEEEECCC------Cc-eeeecccCCc----ccccCCCCCCCCC
Q 001534 630 GGLPASPRLRFNKE----G----S--LLAVTTSDNGIKILANSD------GV-RLLRMLEGRA----MDKNRCPSEPISS 688 (1058)
Q Consensus 630 ~~~~~v~~~~~s~~----~----~--~l~~~~~dg~i~iw~~~~------~~-~~~~~~~~~~----~~~~~~~~~~~~~ 688 (1058)
.....+..+.+-|. | + .=++-+....+.....+. .. .+.+...... .....++-..-..
T Consensus 447 ~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~ 526 (1012)
T KOG1445|consen 447 PKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVN 526 (1012)
T ss_pred CcchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcc
Confidence 00001111111110 0 0 000000000000000000 00 0000000000 0000000000000
Q ss_pred CCccc----------------cccCCCcccccccCCCCCCCCCCCCCccccccC----CCCCccccCCcccc---ccccc
Q 001534 689 KPLTI----------------NALGPASNVSAAIAPTLERPDRGPPAVSISSLG----TIDGSRLVDVKPRV---AEDVD 745 (1058)
Q Consensus 689 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~ 745 (1058)
-+..+ .++|. +.++-........+...+..++.++ .....+..+...++ .+..|
T Consensus 527 ~g~~~sat~~v~~s~s~r~~s~v~G~---iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG 603 (1012)
T KOG1445|consen 527 FGKPISATNRVPLSQSVRPKSCVVGQ---ISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGG 603 (1012)
T ss_pred cCCCccccccccccccccccceeecc---chheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCc
Confidence 00000 00010 0111111111111222222222221 11112222333322 44568
Q ss_pred cccccccCCcCCccceeEEecCCCcCcCceEEEEEcc-CCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCC
Q 001534 746 KIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN-SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPP 824 (1058)
Q Consensus 746 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1058)
.|-++++..+ +....-.+++......|+.+.|.| |..+|++++.||.|++|.+..+...... .
T Consensus 604 ~iai~el~~P---GrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~-------------~ 667 (1012)
T KOG1445|consen 604 VIAIYELNEP---GRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE-------------M 667 (1012)
T ss_pred eEEEEEcCCC---CCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc-------------C
Confidence 8999998763 222222233334667889999998 6788999999999999998754321100 0
Q ss_pred CCCccccccCCCCCCCCCeeEEEEcc-CCcEEEEEe-CCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeC
Q 001534 825 SGTLMTNDINESKPTEESAACIALSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME 902 (1058)
Q Consensus 825 ~~~~~~~~~~~~~h~~~~i~~~~~s~-d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~ 902 (1058)
+ -...+.. | ...|+++.|+| ....||+++ |-+|++||+.+++....+.+|.+.|..++||| +|+.+|+.+.
T Consensus 668 t---Pe~~lt~--h-~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcK 740 (1012)
T KOG1445|consen 668 T---PEKILTI--H-GEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCK 740 (1012)
T ss_pred C---cceeeec--c-cceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeec
Confidence 0 0111333 7 88999999999 456778887 99999999999999999999999999999999 9999999999
Q ss_pred CCeEEEEEcccce-eEEEEeCC-CCCeEEEEEcCCCCEEEEEeCCC----cEEEEeCCCCccccceeeecCCCCCCCCCC
Q 001534 903 DSSVQIYNVRVDE-VKTKLKGH-QNRITGLAFSPTLNALVSSGADA----QLCMWSIDKWEKLKSRFIQAPAGRQSPLVG 976 (1058)
Q Consensus 903 dg~I~iwd~~~~~-~~~~l~~h-~~~v~~l~~spd~~~l~s~s~D~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1058)
||+|++|+-.+++ .+..-++. ...-..+.|.-||++++..+.|. .|.+||.++...-......+.... .
T Consensus 741 Dg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap-----s 815 (1012)
T KOG1445|consen 741 DGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP-----S 815 (1012)
T ss_pred CceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC-----c
Confidence 9999999988764 23222221 12334678888999999888764 588898876431111111111111 1
Q ss_pred eeEEEEcCCCcEEEE-E-eCCeEEEEeCC
Q 001534 977 ETKVQFHNDQTHLLV-V-HESQISVYDSK 1003 (1058)
Q Consensus 977 v~~~~fs~d~~~l~~-~-~d~~i~vwd~~ 1003 (1058)
+.--.+.+|...|+. | .|..|.+|++.
T Consensus 816 ~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 816 PLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred cccccccCCCceEEEecCCCceEEEEEec
Confidence 233456777766655 7 89999999993
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-28 Score=223.65 Aligned_cols=285 Identities=16% Similarity=0.237 Sum_probs=229.6
Q ss_pred eeEEEEecC--CCeEEEEEe-----CCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCC-C
Q 001534 349 VMSMDFHPQ--QQTILLVGT-----NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-G 420 (1058)
Q Consensus 349 V~~~~fspd--g~~lla~g~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd-~ 420 (1058)
=.++.|||- ++..+|++. ..|.+.|-++..++.+.. +.- -.-.+.+..++|+++ .
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s---------------~d~~D~LfdV~Wse~~e 73 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQS---------------YDTEDGLFDVAWSENHE 73 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEe---------------eecccceeEeeecCCCc
Confidence 367889984 432333332 468999999975544431 111 124567999999995 5
Q ss_pred CEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCe
Q 001534 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1058)
Q Consensus 421 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v 500 (1058)
..+++++.||++++||+.... .++..++.|...|.++.|++..++ .++++|-|++|++|+...++.+.++.+|...|
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~s--~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~I 150 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMPS--KPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCI 150 (311)
T ss_pred ceEEEEecCceEEEeccCCCC--cchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEE
Confidence 578889999999999955433 445578899999999999998777 67788999999999999999999999999999
Q ss_pred EEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCE-EEEEecCCCCCceEEEeeCCCC-c
Q 001534 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR-LFSCGTSKEGESHLVEWNESEG-A 578 (1058)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~-~ 578 (1058)
...+|+|.. .+.++++|.|+++++||++..+....+..|...+.++.|+.-... +++++ .|+.|+.||++.- .
T Consensus 151 y~a~~sp~~-~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~----vd~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 151 YQAAFSPHI-PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG----VDNLVRGWDIRNLRT 225 (311)
T ss_pred EEEecCCCC-CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC----CCceEEEEehhhccc
Confidence 999999964 489999999999999999999888889999999999999986555 55555 4888999999874 5
Q ss_pred eeEeecCCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEECCCCc-eEEEEecCCCCCCcceEEEeC-CCCEEEEEECCCc
Q 001534 579 IKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMN-MLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNG 655 (1058)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~ 655 (1058)
++..+.+|.- .|+.+.|+|.. ..|++++.|-+++|||...+. .+.+...|.. .+..+.|++ ++.++|+++.|+.
T Consensus 226 pl~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe~ 302 (311)
T KOG0277|consen 226 PLFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDEL 302 (311)
T ss_pred cceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeecccccc
Confidence 7888888877 89999999975 467789999999999988543 4444444433 678899998 7889999999999
Q ss_pred EEEEEC
Q 001534 656 IKILAN 661 (1058)
Q Consensus 656 i~iw~~ 661 (1058)
++||+.
T Consensus 303 l~Vw~p 308 (311)
T KOG0277|consen 303 LYVWNP 308 (311)
T ss_pred eeeecc
Confidence 999984
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=227.57 Aligned_cols=254 Identities=15% Similarity=0.270 Sum_probs=205.5
Q ss_pred cccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecC------------CC---ceeeeeeeecCcCCeEEEEEecCCCc
Q 001534 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP------------TG---ELRQHLEIDAHVGGVNDIAFAHPNKQ 467 (1058)
Q Consensus 403 ~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~------------~~---~~~~~~~~~~h~~~v~~~~fs~d~~~ 467 (1058)
.+..|++++.+.+|||||.++|+|+.|..|+|.|++. +. .-..+.++..|..+|+++.|+|...
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~- 185 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET- 185 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh-
Confidence 3678999999999999999999999999999999872 11 1122346778999999999999998
Q ss_pred eEEEEEcCCCcEEEEEcCCCceeEEee--CCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEe---cCCCC
Q 001534 468 LCIVTCGDDKMIKVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGN 542 (1058)
Q Consensus 468 ~~l~s~~~d~~v~vwd~~~~~~~~~l~--~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~---~~~~~ 542 (1058)
+|++|+.|++|+++|.......+.++ ....+|.++.|+|.+ .+++.|....++++||+.+.++...- ..|.+
T Consensus 186 -ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG--efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 186 -ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG--EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred -eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC--ceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 99999999999999987654433332 245689999999755 79999999999999999998776543 45677
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecC-CCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 001534 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1058)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1058)
.|+++.+++.|+..++++ .||.|++||--+++++.++.. |.+..|.+..|..+++++++.|.|..+++|.+.+++
T Consensus 263 ai~~V~Ys~t~~lYvTaS----kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTAS----KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred ceeEEEecCCccEEEEec----cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 999999999999999997 488899999999999988864 555579999999999999999999999999999999
Q ss_pred eEEEEecCCCC---CCcceEEEeCCCCEEEEEEC-CCcEEEEECCCC
Q 001534 622 MLTTVDADGGL---PASPRLRFNKEGSLLAVTTS-DNGIKILANSDG 664 (1058)
Q Consensus 622 ~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~ 664 (1058)
.+..+.+.+.. ..-+...|+....+++.-.. .+.+.-||..+.
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 99998765322 12245567766666655433 456777777655
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-28 Score=261.55 Aligned_cols=297 Identities=15% Similarity=0.192 Sum_probs=216.4
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcc----eeecccccccccccccccCCCcCeEEEEECC-
Q 001534 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----KVWDISAASMPLQNALLNDAAISVNRCVWGP- 418 (1058)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp- 418 (1058)
.|.+.|+++.||+||+ +||+|+.||.|+||.+...+....... ....+.+. +.+..+.-++
T Consensus 265 ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~-------------s~~~p~~s~~~ 330 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNAN-------------SQIEPSTSSEE 330 (712)
T ss_pred ccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhc-------------cccCccccccc
Confidence 4899999999999998 899999999999999987443211000 00000000 0011111111
Q ss_pred --CCC--EEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEee
Q 001534 419 --DGL--MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1058)
Q Consensus 419 --d~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~ 494 (1058)
.++ ..-.+.....+.+-+..-.=.-.++..+.||.+.|.++.||.++ +|+++|.|++|++|++....++..|.
T Consensus 331 ~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~ 407 (712)
T KOG0283|consen 331 KISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS 407 (712)
T ss_pred cccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe
Confidence 011 11112122221111111100113344788999999999999876 79999999999999999999999996
Q ss_pred CCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeC
Q 001534 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1058)
Q Consensus 495 ~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1058)
|...|+|++|+|..| ++|++|+-|+.||+|++...+...-.+ -..-|++++|+|||++.++|+. +|.+++|+.
T Consensus 408 -HndfVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~----~G~C~fY~t 480 (712)
T KOG0283|consen 408 -HNDFVTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTF----NGYCRFYDT 480 (712)
T ss_pred -cCCeeEEEEecccCC-CcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEe----ccEEEEEEc
Confidence 999999999999765 899999999999999998655444333 3478999999999999999986 788999998
Q ss_pred CCCceeEeecCC-------CCCceeEEEEcCCCC-EEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCE
Q 001534 575 SEGAIKRTYSGF-------RKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1058)
Q Consensus 575 ~~~~~~~~~~~~-------~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 646 (1058)
...+....+.-+ ....|+.+.|.|... .+++.+.|..|+|+|.+...++..+++......-....|+.||++
T Consensus 481 ~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~ 560 (712)
T KOG0283|consen 481 EGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKH 560 (712)
T ss_pred cCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCE
Confidence 877665544322 122699999987543 588888999999999999899998887655445567889999999
Q ss_pred EEEEECCCcEEEEECCCC
Q 001534 647 LAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 647 l~~~~~dg~i~iw~~~~~ 664 (1058)
|++++.|..|++|+....
T Consensus 561 IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 561 IVSASEDSWVYIWKNDSF 578 (712)
T ss_pred EEEeecCceEEEEeCCCC
Confidence 999999999999998543
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-27 Score=222.75 Aligned_cols=275 Identities=18% Similarity=0.247 Sum_probs=222.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~ 424 (1058)
..+.|.+++|||....+++.|+-||+|++|+++...... ......|.++|.+++|+.||..++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~-----------------~ka~~~~~~PvL~v~WsddgskVf 88 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV-----------------PKAQQSHDGPVLDVCWSDDGSKVF 88 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCccc-----------------chhhhccCCCeEEEEEccCCceEE
Confidence 357899999999766788899999999999998742221 112456999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEE
Q 001534 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1058)
Q Consensus 425 ~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~ 504 (1058)
+|+.|+.+++||+.+++.. .+..|.++|.++.|-+......|+|||.|++|+.||.+...++.++. -...++++.
T Consensus 89 ~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~D 163 (347)
T KOG0647|consen 89 SGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAAD 163 (347)
T ss_pred eeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehh
Confidence 9999999999999998543 56679999999999987765689999999999999999999998876 456677775
Q ss_pred ecccCCccEEEEEeCCCeEEEEeCCCCCceEEec--CCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCC--cee
Q 001534 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIK 580 (1058)
Q Consensus 505 ~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~ 580 (1058)
.- . .+++.+..++.|.+|+++++...+... .-.-.+.+++..+|....+.|+. +|.+.+..+..+ +.-
T Consensus 164 v~--~--pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 164 VL--Y--PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKDN 235 (347)
T ss_pred cc--C--ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccCc
Confidence 43 1 588999999999999998765544322 12336889999888888888775 677777777665 555
Q ss_pred EeecCCCC--------CceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEE
Q 001534 581 RTYSGFRK--------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1058)
Q Consensus 581 ~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 651 (1058)
..|+.|.. -.|++++|+|....|+++|.||++.+||-.....+...+.+.. +|++.+|+.+|.++|.+.
T Consensus 236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q--pItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ--PITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC--ccceeEecCCCCEEEEEe
Confidence 66777753 1478899999999999999999999999988777777665544 899999999999988764
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-27 Score=249.59 Aligned_cols=278 Identities=17% Similarity=0.234 Sum_probs=239.3
Q ss_pred eEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCC
Q 001534 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK 429 (1058)
Q Consensus 350 ~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d 429 (1058)
+-++||..+ +||+|. ...|.+|+..+++...- ..-+...|+++.|+++|.+||+|..+
T Consensus 181 nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred hHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecC
Confidence 446788554 577764 56899999999875432 12247899999999999999999999
Q ss_pred CeEEEEEecCCCceeeeeeeec-CcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEE-eeCCCCCeEEEEecc
Q 001534 430 HIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVCPHH 507 (1058)
Q Consensus 430 ~~i~vwd~~~~~~~~~~~~~~~-h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~-l~~~~~~v~~~~~~~ 507 (1058)
|.|.|||..+.+.++ .+.+ |...|-+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|++
T Consensus 239 g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 239 GTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred CeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 999999999877666 6667 99999999998 44 799999999999999998876655 889999999999995
Q ss_pred cCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCC-CCEEEEEecCCCCCceEEEeeCCCCceeEeecCC
Q 001534 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1058)
Q Consensus 508 ~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1058)
++.++++|+.|+.+.|||.........+..|...|.+++|+|- ...||+|+. ..|++|++||..+|..+......
T Consensus 312 --d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdtg 387 (484)
T KOG0305|consen 312 --DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDTG 387 (484)
T ss_pred --CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEecccccC
Confidence 5589999999999999999988999999999999999999995 456666654 56899999999999998887765
Q ss_pred CCCceeEEEEcCCCCEEEE--EeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001534 587 RKRSLGVVQFDTTRNRFLA--AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 587 ~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
. .|..+.|++..+.+++ |..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+.
T Consensus 388 s--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 388 S--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred C--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 4 6999999999988777 44778999999999999998887765 7999999999999999999999999998664
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-27 Score=258.57 Aligned_cols=279 Identities=16% Similarity=0.275 Sum_probs=245.4
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEE
Q 001534 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1058)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l 423 (1058)
.+...+.|..|. ++ .+.+|+.+++|++||..++..+.. -+.||.+.|.++++..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 357789999999 44 578899999999999999876642 167999999999998878899
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEE
Q 001534 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1058)
Q Consensus 424 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~ 503 (1058)
++|+.|.++++||..+|++.. .+.+|.+.|.++...+. ++++|+.|.+|++|++.++..+..+.+|.++|.++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999998887 88899999999988543 68899999999999999999999999999999999
Q ss_pred EecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCC-ceeEe
Q 001534 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRT 582 (1058)
Q Consensus 504 ~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~ 582 (1058)
..+ +.++++|+.|++|++||+.+.+....+.+|...|+++.+.+. ..+++++. |+.|++||+.++ +++..
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhh
Confidence 976 369999999999999999999999999999999999988766 88899886 788999999999 99999
Q ss_pred ecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECC
Q 001534 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1058)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1058)
+.+|.. .+..+.+ .+++|++++.|++|++||..+++.+..+... +...|..+++. ...+++++.||.+++||+.
T Consensus 409 l~~h~~-~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 409 LQGHTS-LVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred hcCCcc-ccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence 999987 5654444 5789999999999999999999999999875 33456666665 5688999999999999999
Q ss_pred CCc
Q 001534 663 DGV 665 (1058)
Q Consensus 663 ~~~ 665 (1058)
++.
T Consensus 483 ~~~ 485 (537)
T KOG0274|consen 483 SGT 485 (537)
T ss_pred cCc
Confidence 983
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-25 Score=212.97 Aligned_cols=295 Identities=15% Similarity=0.292 Sum_probs=242.2
Q ss_pred ceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCc
Q 001534 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1058)
Q Consensus 488 ~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1058)
++.+.+......|+++.|+ .+|.++++++.|.++++||..++.....+..+...+..+.|......++.++. ..|.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs--~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt--k~d~ 80 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFS--DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST--KEDD 80 (311)
T ss_pred ccccccccCCCceeEEEec--CCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC--CCCC
Confidence 3445566667889999998 45689999999999999999999999999988888999999887777776654 3477
Q ss_pred eEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEE
Q 001534 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647 (1058)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 647 (1058)
.|+..++.+.+.++-|.||.. .|..++.+|-+..+++++.|++|++||++..++...+..... ..++|.|+|-++
T Consensus 81 tIryLsl~dNkylRYF~GH~~-~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~----pi~AfDp~GLif 155 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRYFPGHKK-RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR----PIAAFDPEGLIF 155 (311)
T ss_pred ceEEEEeecCceEEEcCCCCc-eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC----cceeECCCCcEE
Confidence 899999999999999999999 899999999999999999999999999998888888766533 568999999999
Q ss_pred EEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCC
Q 001534 648 AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 727 (1058)
Q Consensus 648 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1058)
|++...+.|++||++.-.. +
T Consensus 156 A~~~~~~~IkLyD~Rs~dk------g------------------------------------------------------ 175 (311)
T KOG1446|consen 156 ALANGSELIKLYDLRSFDK------G------------------------------------------------------ 175 (311)
T ss_pred EEecCCCeEEEEEecccCC------C------------------------------------------------------
Confidence 9999888999999854300 0
Q ss_pred CCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCC
Q 001534 728 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERN 807 (1058)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~ 807 (1058)
+-.. |..+
T Consensus 176 ----------------------------------------------PF~t--f~i~------------------------ 183 (311)
T KOG1446|consen 176 ----------------------------------------------PFTT--FSIT------------------------ 183 (311)
T ss_pred ----------------------------------------------Ccee--EccC------------------------
Confidence 0000 0000
Q ss_pred CCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEECCCceEEEEecCCCCCe--
Q 001534 808 PSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAA-- 884 (1058)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i-- 884 (1058)
.. . ....+.+.|||||++|+.+. .+.+.+.|.-+|..+..+.++...-
T Consensus 184 -------------------------~~---~-~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~ 234 (311)
T KOG1446|consen 184 -------------------------DN---D-EAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL 234 (311)
T ss_pred -------------------------CC---C-ccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc
Confidence 00 1 44567788999999888887 6779999999999888888766532
Q ss_pred -EEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001534 885 -TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG-HQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1058)
Q Consensus 885 -~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~-h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~ 955 (1058)
-..+|+| |++++.+|+.||+|.+|++++|..+..+++ +.+++.++.|.|.-.++||+ +..+.+|=...
T Consensus 235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~ 304 (311)
T KOG1446|consen 235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDE 304 (311)
T ss_pred ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEeccc
Confidence 6788999 999999999999999999999999999998 79999999999987777765 55788886654
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=213.18 Aligned_cols=249 Identities=16% Similarity=0.225 Sum_probs=211.4
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEE
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd 483 (1058)
+.+|...|.+++|+.+|..|++|+.|+++.+|+++.... .......+|.+.|-.++|.|.... .+++++.|.+|++||
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~-~~~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF-RKELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh-hhhhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence 567999999999999999999999999999999998743 333356789999999999998777 899999999999999
Q ss_pred cCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001534 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1058)
Q Consensus 484 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1058)
++.+++..........+ -+.|+| +|.+++.++.|..|.+.|.++.+.....+ ....+..++|+.++..++...
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp--~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~--- 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSP--DGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTN--- 166 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcC--CCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEec---
Confidence 99999998887544444 456664 56899999999999999998766554433 234677888987777776653
Q ss_pred CCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCC
Q 001534 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1058)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1058)
+.|.|.|.....-+++..++.|.. ...|+.|+|+|++|++|+.|..+.+||+...-++..+....- +|..+.||.|
T Consensus 167 -GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS~d 242 (313)
T KOG1407|consen 167 -GLGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVRTLSFSHD 242 (313)
T ss_pred -CCceEEEEeccccccccccccCCc-ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceEEEEeccC
Confidence 478999999999999999999987 677899999999999999999999999998877777766544 7999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCc
Q 001534 644 GSLLAVTTSDNGIKILANSDGV 665 (1058)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~~ 665 (1058)
|++||+++.|..|-|=++++|.
T Consensus 243 g~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 243 GRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred cceeeccCccceEEeEecccCC
Confidence 9999999999999988888773
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=216.65 Aligned_cols=255 Identities=11% Similarity=0.214 Sum_probs=211.0
Q ss_pred cccceeEeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEE
Q 001534 335 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1058)
Q Consensus 335 ~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 414 (1058)
..-+....++-.+.+..++||+.....+++++.||+++|||+..... +...++.|..+|.++
T Consensus 49 ~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Sv 110 (311)
T KOG0277|consen 49 KGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSV 110 (311)
T ss_pred CCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEe
Confidence 33445667778899999999999888888999999999999543221 223478899999999
Q ss_pred EECC-CCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEe
Q 001534 415 VWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1058)
Q Consensus 415 ~~sp-d~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l 493 (1058)
.|++ +++.+++++.|++|++|+...++.+. ++.+|...|...+|+|.... +++++|.|+++++||++..-....+
T Consensus 111 dwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i 186 (311)
T KOG0277|consen 111 DWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSI 186 (311)
T ss_pred ccccccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEE
Confidence 9999 56678888999999999999887776 78999999999999998777 8999999999999999875444458
Q ss_pred eCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCC-ceEEecCCCCcEEEEEEcCCCC-EEEEEecCCCCCceEEE
Q 001534 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVE 571 (1058)
Q Consensus 494 ~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~ 571 (1058)
..|...+.++.|+... ...+++|+.|+.|+.||+++.+ ++..+.+|+-.|..+.|||... .|++++. |-++++
T Consensus 187 ~ah~~Eil~cdw~ky~-~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~ri 261 (311)
T KOG0277|consen 187 EAHNSEILCCDWSKYN-HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVRI 261 (311)
T ss_pred EeccceeEeecccccC-CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEEe
Confidence 8999999999998754 4899999999999999999865 4567888999999999999765 5567764 888999
Q ss_pred eeCCCCc-eeEeecCCCCCceeEEEEcC-CCCEEEEEeCCCeEEEEEC
Q 001534 572 WNESEGA-IKRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDM 617 (1058)
Q Consensus 572 wd~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~ 617 (1058)
||...+. .+.+...|.. .+..+.|++ ++.++++.+-|+.++||+.
T Consensus 262 w~~~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 262 WDPERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 9988554 4455555555 788888887 4568889999999999984
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=226.14 Aligned_cols=306 Identities=15% Similarity=0.269 Sum_probs=234.6
Q ss_pred CCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCC---CEEEEEeCCCeEEEEE
Q 001534 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR---NRFLAAGDEFQIKFWD 616 (1058)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd 616 (1058)
|...|.++... +++++++++ ||.+++||.. |+....+.+|.+ ++..++|.-.. ..|++++.|.++++|-
T Consensus 104 hdDWVSsv~~~--~~~IltgsY----Dg~~riWd~~-Gk~~~~~~Ght~-~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSY----DGTSRIWDLK-GKSIKTIVGHTG-PIKSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred chhhhhhhccc--CceEEEeec----CCeeEEEecC-CceEEEEecCCc-ceeeeEEEecCCccceEEEecCCceEEEEE
Confidence 56678888776 889999986 7889999975 899999999998 78877764333 3599999999999999
Q ss_pred CCCCceEEEE--ecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCcccc
Q 001534 617 MDNMNMLTTV--DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 694 (1058)
Q Consensus 617 ~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1058)
.+.++..... ...+|...|-+++..++|..+++|+.|..|.||+..+. ....++......... .
T Consensus 176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~--~~~~~E~~s~~rrk~----------~-- 241 (423)
T KOG0313|consen 176 WNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETD--EEDELESSSNRRRKK----------Q-- 241 (423)
T ss_pred ecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCC--ccccccccchhhhhh----------h--
Confidence 8877654332 22366678999999999999999999999999994332 112222111100000 0
Q ss_pred ccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCc
Q 001534 695 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 774 (1058)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1058)
............+.+ .+|..+
T Consensus 242 ---------------------------------------------------------~~~~~~~~r~P~vtl--~GHt~~ 262 (423)
T KOG0313|consen 242 ---------------------------------------------------------KREKEGGTRTPLVTL--EGHTEP 262 (423)
T ss_pred ---------------------------------------------------------hhhhcccccCceEEe--cccccc
Confidence 000000001111122 349999
Q ss_pred eEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcE
Q 001534 775 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 854 (1058)
Q Consensus 775 i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~ 854 (1058)
|.++.|++ ...+++++.|.+|+.||+.+ |..... +.+ ...+.++.++|..++
T Consensus 263 Vs~V~w~d-~~v~yS~SwDHTIk~WDlet----------------------g~~~~~-~~~----~ksl~~i~~~~~~~L 314 (423)
T KOG0313|consen 263 VSSVVWSD-ATVIYSVSWDHTIKVWDLET----------------------GGLKST-LTT----NKSLNCISYSPLSKL 314 (423)
T ss_pred eeeEEEcC-CCceEeecccceEEEEEeec----------------------ccceee-eec----CcceeEeecccccce
Confidence 99999999 66699999999999998753 333322 333 778999999999999
Q ss_pred EEEEe-CCeEEEEECCCce---EEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccce-eEEEEeCCCCCeEE
Q 001534 855 VMSAS-GGKVSLFNMMTFK---VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-VKTKLKGHQNRITG 929 (1058)
Q Consensus 855 la~~s-dg~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~-~~~~l~~h~~~v~~ 929 (1058)
||+|+ |..+++||..++. ....|.+|.+.|.++.|+|.+...+++|+.|+++++||+++.+ .+..+.+|.+.|.+
T Consensus 315 l~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~ 394 (423)
T KOG0313|consen 315 LASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLS 394 (423)
T ss_pred eeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEE
Confidence 99998 9999999998753 4567889999999999999888899999999999999999887 89999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001534 930 LAFSPTLNALVSSGADAQLCMWSIDK 955 (1058)
Q Consensus 930 l~~spd~~~l~s~s~D~~i~iwd~~~ 955 (1058)
+.|. ++..++|||.|.+|+|+.-..
T Consensus 395 vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 395 VDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred Eecc-CCceEEeccCcceEEEecccc
Confidence 9997 677999999999999986543
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=244.80 Aligned_cols=262 Identities=17% Similarity=0.288 Sum_probs=227.6
Q ss_pred ceecCCccccceeEeec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccC
Q 001534 328 NVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1058)
Q Consensus 328 ~~~~~~~~~~~~~~~~~-h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1058)
.+|.|+.....+....+ +.+.|+++.|+++|. +||+|..+|.|.|||..+.+.+.. +.+
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~-------------------~~~ 257 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT-------------------LRG 257 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccc-------------------ccC
Confidence 45666666666555555 389999999999998 799999999999999998877664 455
Q ss_pred -CCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001534 407 -AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1058)
Q Consensus 407 -h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~ 485 (1058)
|...|.+++|+ +..+.+|+.|+.|..+|+...+.... .+.+|...|..++|++|+. ++++|+.|+.+.|||..
T Consensus 258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGL 331 (484)
T ss_pred CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCC
Confidence 99999999997 77899999999999999998765543 4789999999999999999 89999999999999998
Q ss_pred CCceeEEeeCCCCCeEEEEecccCCccEEEEEe--CCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001534 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA--IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1058)
Q Consensus 486 ~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s--~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1058)
...++..+..|.+.|.+++|+|... .+||+|+ .|++|++||..++..+..+. .+..|.++.|++..+-++++..
T Consensus 332 ~~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG-- 407 (484)
T KOG0305|consen 332 SPEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHG-- 407 (484)
T ss_pred CccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecC--
Confidence 8899999999999999999999765 6888875 59999999999776666554 4668999999999988876653
Q ss_pred CCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001534 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1058)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 620 (1058)
..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-..
T Consensus 408 ~s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 408 YSENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 2466799999999999999999998 7999999999999999999999999998765
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=234.60 Aligned_cols=247 Identities=19% Similarity=0.258 Sum_probs=210.3
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEE
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd 483 (1058)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.+..++|+++.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 56799999999999999999999999999999998866 333447778889999999999999 788899999999999
Q ss_pred cCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001534 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1058)
Q Consensus 484 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1058)
+...+...+|.||+..|+++.|.... ..+++|+.|.+|+.||+....+..+.- ....+..+..+ ...++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence 99999999999999999999987554 349999999999999998855544332 23345555554 445556654
Q ss_pred CCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCC--CCCCcceEEEe
Q 001534 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG--GLPASPRLRFN 641 (1058)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~s 641 (1058)
|.+|+.||.+++.+......+. .|+++..++++..+++.+.|.++.+.|+++.+....+...+ .....+.+.||
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred --ccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 7779999999999998888765 69999999999999999999999999999999888886543 22357889999
Q ss_pred CCCCEEEEEECCCcEEEEECCCC
Q 001534 642 KEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 642 ~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
|++.|+++|+.||.|+||++.++
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCc
Confidence 99999999999999999999888
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=232.83 Aligned_cols=302 Identities=17% Similarity=0.225 Sum_probs=233.6
Q ss_pred cccceeEeec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEE
Q 001534 335 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1058)
Q Consensus 335 ~~~~~~~~~~-h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 413 (1058)
.|..+...+. |+..|.++++.|.|.+ +++|+.|..|++||++....... .|+ .+.......|++
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr-------------~l~P~E~h~i~s 219 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFR-------------QLQPCETHQINS 219 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhh-------------ccCcccccccce
Confidence 3445555666 6789999999999985 78999999999999986543221 121 112335567999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEecCCCc---------eeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEc
Q 001534 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGE---------LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1058)
Q Consensus 414 ~~~spd~~~l~~~~~d~~i~vwd~~~~~~---------~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~ 484 (1058)
++||+.|..|++.+.....+|+|-++-.. ++.....+||...++|.+|+|+.+. .++|++.||++++||+
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv 298 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDV 298 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEec
Confidence 99999999999999999999999765332 2223345689999999999999988 8999999999999999
Q ss_pred CCCce-eEEee-----CCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceE---EecCCCC--cEEEEEEcCCC
Q 001534 485 VAGRK-QYTFE-----GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGN--WCTMMAYSADG 553 (1058)
Q Consensus 485 ~~~~~-~~~l~-----~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~---~~~~~~~--~v~~~~~s~~~ 553 (1058)
...+. +..++ +..-+++.++|++ +|+.|++|+.||.|.+|+........ .-..|.. .|+++.||+||
T Consensus 299 ~~~k~q~qVik~k~~~g~Rv~~tsC~~nr--dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 299 NNTKSQLQVIKTKPAGGKRVPVTSCAWNR--DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred CCchhheeEEeeccCCCcccCceeeecCC--CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence 76442 33332 3445788889985 55899999999999999976543322 3344554 89999999999
Q ss_pred CEEEEEecCCCCCceEEEeeCCCC-ceeEeecCCCC-CceeEEEEcCCCCEEEEEe------CCCeEEEEECCCCceEEE
Q 001534 554 TRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRK-RSLGVVQFDTTRNRFLAAG------DEFQIKFWDMDNMNMLTT 625 (1058)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~ 625 (1058)
++|++-+. |..+++||++.. +++....+... -.-+.++|+|+.+.+++|. ..|.+++||..+.+.+..
T Consensus 377 ~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 377 NYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK 452 (641)
T ss_pred chhhhccC----CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE
Confidence 99999874 888999999874 45555444322 1346789999999999986 357899999999999999
Q ss_pred EecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEE
Q 001534 626 VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1058)
Q Consensus 626 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 660 (1058)
+.... ..|..+.|+|.-+.|.+|+.||++++|=
T Consensus 453 i~i~~--aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 453 IDIST--ASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ecCCC--ceEEEEeecchhhheeeecCCCceEEEE
Confidence 87763 3688999999999999999999999874
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-26 Score=227.86 Aligned_cols=286 Identities=14% Similarity=0.211 Sum_probs=230.0
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecc----cccccccccccccCCCcCeEEEEECCC
Q 001534 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI----SAASMPLQNALLNDAAISVNRCVWGPD 419 (1058)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~v~~~~~spd 419 (1058)
.|.-+|.||+++||++ ...+++.+|+|.=|++.+|+.... +|.- ...-.+....- ++|...+.+++.|+|
T Consensus 140 ~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~D 213 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSD 213 (479)
T ss_pred cccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcCC
Confidence 3778999999999998 678899999999999999986521 1110 00011111111 489999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCC
Q 001534 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1058)
Q Consensus 420 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~ 499 (1058)
|++||+|+.|..|.||+.++.+.+. .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++.+|++.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd~ 288 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQDG 288 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence 9999999999999999999987776 6889999999999976655 6899999999999999999999999999999
Q ss_pred eEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCce
Q 001534 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1058)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1058)
|.++..... +..+-+|+.|+++++|++ .......+.++.+.+.+++|-. ..++++|+. +|.|.+|++...++
T Consensus 289 v~~IdaL~r--eR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In-~~HfvsGSd----nG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 289 VLGIDALSR--ERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIN-DEHFVSGSD----NGSIALWSLLKKKP 360 (479)
T ss_pred eeeechhcc--cceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEec-ccceeeccC----CceEEEeeecccCc
Confidence 999986643 356666779999999999 4455667777888999999954 566777774 88899999999888
Q ss_pred eEeecCCCC-----------CceeEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceEEEEecCCCCCCcceEEEeCCC
Q 001534 580 KRTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGGLPASPRLRFNKEG 644 (1058)
Q Consensus 580 ~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1058)
+.+....++ ..|++++..|...++++|+.+|.|++|-+..+ +++..++.. +.|++++|+++|
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~f~~sg 437 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLAFSNSG 437 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEEEccCC
Confidence 877643321 15788999999999999999999999998877 344444433 469999999999
Q ss_pred CEEEEEE
Q 001534 645 SLLAVTT 651 (1058)
Q Consensus 645 ~~l~~~~ 651 (1058)
+.+++|.
T Consensus 438 k~ivagi 444 (479)
T KOG0299|consen 438 KRIVAGI 444 (479)
T ss_pred CEEEEec
Confidence 9776663
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=242.84 Aligned_cols=242 Identities=19% Similarity=0.224 Sum_probs=207.7
Q ss_pred EEEECC-CCCEEEEEeCCCeEEEEEecCCCce---eeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCC-
Q 001534 413 RCVWGP-DGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG- 487 (1058)
Q Consensus 413 ~~~~sp-d~~~l~~~~~d~~i~vwd~~~~~~~---~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~- 487 (1058)
.+..++ .+++|.+||.||.|++|++...... .....++.|...|++++...+++ .|+++|.|.+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 344443 6778999999999999998764331 12336788999999999999998 7999999999999999887
Q ss_pred -ceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCc--eE--------Eec-CCCCcEEEEEEcCCCCE
Q 001534 488 -RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RV--------DYD-APGNWCTMMAYSADGTR 555 (1058)
Q Consensus 488 -~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~--~~--------~~~-~~~~~v~~~~~s~~~~~ 555 (1058)
-+..++..|...|.|+++-. .+...+++|+-|+.|.+||+.++.. .. .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~a-k~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIA-KNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeecc-cCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 57788999999999999832 3447999999999999999997633 11 122 56678999999999988
Q ss_pred EEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCc
Q 001534 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1058)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1058)
+++|+. .+.+++||.++++.+..+.+|.. .|.++-.++||..+++++.||+|++||+...+++.++..|.. .|
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~V 258 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GV 258 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ce
Confidence 888875 66699999999999999999998 899999999999999999999999999999999999988876 58
Q ss_pred ceEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001534 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
.++..+|+-..+++|+.||.|..-|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999999888765
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-25 Score=245.17 Aligned_cols=257 Identities=12% Similarity=0.125 Sum_probs=197.3
Q ss_pred EeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCC-CCEEEEEeCCCeEEEEEecCCCc-
Q 001534 365 GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGE- 442 (1058)
Q Consensus 365 g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd-~~~l~~~~~d~~i~vwd~~~~~~- 442 (1058)
|+.++.|++|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 4556778888766543222 26789999999999996 78999999999999999986432
Q ss_pred e----eeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEe
Q 001534 443 L----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (1058)
Q Consensus 443 ~----~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s 518 (1058)
. .....+.+|...|.+++|+|++.. ++++++.|++|++||+.+++.+..+. |...|.+++|++ +|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence 1 122356789999999999999875 56899999999999999999887776 667899999996 458999999
Q ss_pred CCCeEEEEeCCCCCceEEecCCCCcEEE-----EEEcCCCCEEEEEecCCCCCceEEEeeCCC-CceeEeecCCCCC-ce
Q 001534 519 IDGKIKAWLYDYLGSRVDYDAPGNWCTM-----MAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKR-SL 591 (1058)
Q Consensus 519 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~-~v 591 (1058)
.|+.|++||++++.....+..|.+.+.+ ..|++++.++++++.++..++.|++||+++ +.++..+..+... .+
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 9999999999999888888888765433 345689999999887554456899999995 5566555433321 23
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCC
Q 001534 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1058)
Q Consensus 592 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 645 (1058)
......+++.++++|+.|+.|++|++..+. +..+.......++.+++|.|+..
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEccccc
Confidence 333335568888899999999999998764 44444444445778899999653
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=222.39 Aligned_cols=282 Identities=15% Similarity=0.213 Sum_probs=244.0
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEE
Q 001534 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1058)
Q Consensus 347 ~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~ 426 (1058)
..++++...|... .+.+|+.|..+.++|..+++.+.. ++||...|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 4788999998844 688999999999999999988764 89999999999999999999999
Q ss_pred eCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeC--CCCCeEEEE
Q 001534 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--HEAPVYSVC 504 (1058)
Q Consensus 427 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~--~~~~v~~~~ 504 (1058)
+.|..|+||......... ....|.++|+.+..+|.|+ ||++++.|++..+.|+++|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998766444 5668999999999999999 899999999999999999998876654 334689999
Q ss_pred ecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeec
Q 001534 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1058)
Q Consensus 505 ~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1058)
||| ||.+|.+|..|+.+++||+..+.....+.+|.++|.+++|+.+|-+|++++. |+.|++||++.-+...++.
T Consensus 355 fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 995 5589999999999999999999999999999999999999999999999984 7779999999888878877
Q ss_pred CCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEEC
Q 001534 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1058)
Q Consensus 585 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 661 (1058)
......+.+++|.+.|.+|+.+|.|=.|++++-.+. ..+..+..+ .+..+++.|....+++++++.|..++++.+
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~--sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH--SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc--ccccceeeecccceEEeeccchhheEEeec
Confidence 766557999999999999999988877777775443 344444433 346789999999999999999999888754
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-26 Score=247.32 Aligned_cols=265 Identities=17% Similarity=0.229 Sum_probs=207.9
Q ss_pred cCcCceEEEEEccCCceEEEeeccceEEEEEcccCCC--------------------------CC---CCcccc------
Q 001534 770 IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER--------------------------NP---SGKATA------ 814 (1058)
Q Consensus 770 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~--------------------------~~---~~~~~~------ 814 (1058)
.|.+.|.++.||+||++||++|.|+.|+||.+..... .. .+....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4999999999999999999999999999999876200 00 000000
Q ss_pred cccccccCCCCCCcccc---ccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEECCCceEEEEecCCCCCeEEEEEe
Q 001534 815 NVAPQLWQPPSGTLMTN---DINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFH 890 (1058)
Q Consensus 815 ~~~~~~~~~~~~~~~~~---~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 890 (1058)
... .+.+......... .+.| | .+.|..+.||.++ +|++++ |.+|++|++...+|++.|. |..-|+|++|+
T Consensus 345 s~~-~~~p~~~f~f~ekP~~ef~G--H-t~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn 418 (712)
T KOG0283|consen 345 SPC-VLLPLKAFVFSEKPFCEFKG--H-TADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN 418 (712)
T ss_pred Ccc-ccCCCccccccccchhhhhc--c-chhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence 000 0111111111111 2445 8 9999999999876 666777 9999999999999999998 99999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCC
Q 001534 891 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR 970 (1058)
Q Consensus 891 ~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~ 970 (1058)
|-|.+++++|+-||.|+||++...+.+.-...+ .-|++++|+|||++.+.|+.+|..++|+....+......+....+.
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 999999999999999999999988765544434 7799999999999999999999999999998887766666655544
Q ss_pred CCCCCCeeEEEEcCCC--cEEEEEeCCeEEEEeC-CCCeeeEEee----ccccceEEccCCcEEEEEECCCeEEEEcC
Q 001534 971 QSPLVGETKVQFHNDQ--THLLVVHESQISVYDS-KLECSRSVSF----LSLCPYVFGVSSIFLLSTLTKLSVAVHDP 1041 (1058)
Q Consensus 971 ~~~~~~v~~~~fs~d~--~~l~~~~d~~i~vwd~-~~~~~~~~~~----~~~~~~~~s~~~~~l~~~~~d~~v~vw~~ 1041 (1058)
...-..|+.+.|.|.. ++|+|+.|..|+|||. +.+.+..+.. .+-....|+.||++|++++.|..|.+|+.
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 4433579999999754 4888889999999999 6666666654 22455788899999999999999999996
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-25 Score=246.23 Aligned_cols=251 Identities=16% Similarity=0.194 Sum_probs=202.9
Q ss_pred CCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCce----------eeeeeeecCcCCeEEEEEec-CCCceEEEEEcC
Q 001534 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL----------RQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGD 475 (1058)
Q Consensus 407 h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~----------~~~~~~~~h~~~v~~~~fs~-d~~~~~l~s~~~ 475 (1058)
|-..|.....++|+..+++++.+..+..|+..++..+ .....+.+|.+.|++++|+| +++ +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 3345666677778777888888877778876554322 11224678999999999999 677 8999999
Q ss_pred CCcEEEEEcCCC-------ceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEE
Q 001534 476 DKMIKVWDVVAG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1058)
Q Consensus 476 d~~v~vwd~~~~-------~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1058)
|++|++||+.++ .++..+.+|...|.+++|+|.. +++|++++.|++|++||++++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 3567889999999999999764 36999999999999999999888888888999999999
Q ss_pred EcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEe----CCCeEEEEECCCCc-eE
Q 001534 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMN-ML 623 (1058)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~-~~ 623 (1058)
|+|+|.+|++++. |+.|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+++.. ++
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 9999999999874 888999999999999999888764556778999888888755 47899999998754 33
Q ss_pred EEEecCCCCCCcceEEEeCCCCEEEEEE-CCCcEEEEECCCCc
Q 001534 624 TTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGV 665 (1058)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~ 665 (1058)
.....+. ...+....|++++.+|++++ .||.|++|++.++.
T Consensus 252 ~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 252 STVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred eEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 3333322 23455677899999999887 59999999998773
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-27 Score=227.79 Aligned_cols=287 Identities=13% Similarity=0.184 Sum_probs=233.9
Q ss_pred eEeec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC
Q 001534 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1058)
Q Consensus 340 ~~~~~-h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 418 (1058)
+..+. |.++|.|++=+|..-..+|+|+.||.|+|||+.+.++... +..|.+.|..+++..
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ 119 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc
Confidence 33444 8999999999999844789999999999999999887764 778999999999977
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCC
Q 001534 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1058)
Q Consensus 419 d~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~ 498 (1058)
..+++++.|.+|+.|.++.. ... ++. ..+.+..+.-+..+. .++|||. .|.|||.....++.++.-...
T Consensus 120 --~~~~tvgdDKtvK~wk~~~~-p~~---til-g~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~D 188 (433)
T KOG0268|consen 120 --TSFFTVGDDKTVKQWKIDGP-PLH---TIL-GKSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGAD 188 (433)
T ss_pred --cceEEecCCcceeeeeccCC-cce---eee-ccccccccccccccc--cccccCc--eeeecccccCCccceeecCCC
Confidence 77889999999999998873 222 332 344577777776666 7888876 589999999999999988888
Q ss_pred CeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCC-
Q 001534 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG- 577 (1058)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~- 577 (1058)
.|.++.|+|... .+|++++.|+.|.+||+++..+...... ...-+.++|+|.+-.++++. +|..++.+|++.-
T Consensus 189 ti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~----ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 189 SISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAAN----EDHNLYTYDMRNLS 262 (433)
T ss_pred ceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecc----ccccceehhhhhhc
Confidence 999999999765 7899999999999999999887665432 22456889999665566654 5888999999864
Q ss_pred ceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEE
Q 001534 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1058)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 657 (1058)
+++..+.+|.. .|..+.|+|.|+.+++|+.|.+|+||....+..-..+... ....|.++.||.|.+++++|++|+.|+
T Consensus 263 ~p~~v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 263 RPLNVHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDSKYIISGSDDGNVR 340 (433)
T ss_pred ccchhhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-hhheeeEEEEeccccEEEecCCCccee
Confidence 57777888877 8999999999999999999999999999876644433222 123689999999999999999999999
Q ss_pred EEECCCC
Q 001534 658 ILANSDG 664 (1058)
Q Consensus 658 iw~~~~~ 664 (1058)
+|.....
T Consensus 341 lWka~As 347 (433)
T KOG0268|consen 341 LWKAKAS 347 (433)
T ss_pred eeecchh
Confidence 9987654
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-26 Score=237.64 Aligned_cols=288 Identities=19% Similarity=0.261 Sum_probs=236.7
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCCC
Q 001534 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1058)
Q Consensus 351 ~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~ 430 (1058)
++..++.+.++|.+|+.||.|++|++.......+.. ....+..|..+|+.++...+|+.|+++|.|-
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-------------~~asme~HsDWVNDiiL~~~~~tlIS~SsDt 95 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-------------YIASMEHHSDWVNDIILCGNGKTLISASSDT 95 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccc-------------hhhhhhhhHhHHhhHHhhcCCCceEEecCCc
Confidence 555665554589999999999999997654321100 1122667999999999999999999999999
Q ss_pred eEEEEEecCCCceeeeeeeecCcCCeEEEEE-ecCCCceEEEEEcCCCcEEEEEcCCC--ceeE--------Eee-CCCC
Q 001534 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAF-AHPNKQLCIVTCGDDKMIKVWDVVAG--RKQY--------TFE-GHEA 498 (1058)
Q Consensus 431 ~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~f-s~d~~~~~l~s~~~d~~v~vwd~~~~--~~~~--------~l~-~~~~ 498 (1058)
+|++|+...+. .....++..|...|.|+++ .++.. ++|+||-|+.|.+||+.+| +.+. .+. |+..
T Consensus 96 TVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 96 TVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred eEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 99999998874 2233377789999999999 66666 8999999999999999987 3332 233 7888
Q ss_pred CeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCc
Q 001534 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1058)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1058)
.|++++.++ .|..+++|+..+.+++||.++.+.+..+.+|...|..+..++||+.+++++. |++|++||+...+
T Consensus 173 siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtIrlWdLgqQr 246 (735)
T KOG0308|consen 173 SIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTIRLWDLGQQR 246 (735)
T ss_pred ceeeeecCC--cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceEEeeeccccc
Confidence 999999874 4589999999999999999999999999999999999999999999999985 8999999999999
Q ss_pred eeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEE
Q 001534 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1058)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 658 (1058)
++.++..|.. .+.++..+|+-..+++|+.||.|..=|+++......+-... .+|..+..+.+.+-+-+++.|+.|+-
T Consensus 247 Cl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d--aPv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 247 CLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED--APVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred eeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC--CchhhhhhccccCCceeeecccccee
Confidence 9999999998 69999999999999999999999999999854443333222 26777777765555678888999999
Q ss_pred EECCC
Q 001534 659 LANSD 663 (1058)
Q Consensus 659 w~~~~ 663 (1058)
|....
T Consensus 324 W~~~~ 328 (735)
T KOG0308|consen 324 WKLEP 328 (735)
T ss_pred cCCcc
Confidence 97643
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=225.50 Aligned_cols=252 Identities=19% Similarity=0.244 Sum_probs=214.4
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeee--------------eee-ecCcCCeEEEEEecCCCce
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH--------------LEI-DAHVGGVNDIAFAHPNKQL 468 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~--------------~~~-~~h~~~v~~~~fs~d~~~~ 468 (1058)
+..|.-+|.+++++||+++..+++.+++|.=|++.++...+.. ..- .+|...+.+++.|+||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 5679999999999999999999999999999999887633110 011 27888999999999999
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEE
Q 001534 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1058)
Q Consensus 469 ~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1058)
+|++|+.|..|.|||..+.+.++.+.+|.+.|.+++|-... +-+++++.|++|++|+++....+.++-+|...|.++.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 89999999999999999999999999999999999997544 6899999999999999998888889999999999999
Q ss_pred EcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEec
Q 001534 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1058)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1058)
...-++.+-+++. |.++++|++.. +....+.++.+ .+.|++|-. ...+++|+++|.|.+|++...+++.+...
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 8888877777764 88999999953 33345666665 799999975 46899999999999999999998887643
Q ss_pred CCC----------CCCcceEEEeCCCCEEEEEECCCcEEEEECCCCce
Q 001534 629 DGG----------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVR 666 (1058)
Q Consensus 629 ~~~----------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 666 (1058)
..+ ...|++++..|...++|+|+.+|.|++|.+..+.+
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 211 12578999999999999999999999999988743
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=248.50 Aligned_cols=316 Identities=15% Similarity=0.262 Sum_probs=239.9
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEe--CCCeEEEEEecCC--------C-ceeeeeeeecCcCCeEEEEEecCCCceEEEE
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAF--SKHIVHLYTYNPT--------G-ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT 472 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~--~d~~i~vwd~~~~--------~-~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s 472 (1058)
+..+...|.+++.+|||..+|+|+ .|+.++||+.+.- . ..........|.+.|+|+.|+|||+ +||+
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~--~lAs 86 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS--YLAS 86 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC--eEee
Confidence 344567799999999999999999 8999999986531 1 1233345668999999999999999 8999
Q ss_pred EcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCC
Q 001534 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD 552 (1058)
Q Consensus 473 ~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 552 (1058)
||+|+.|.||+-.. .. ...+..+ +
T Consensus 87 GSDD~~v~iW~~~~-~~----------~~~~fgs----------~----------------------------------- 110 (942)
T KOG0973|consen 87 GSDDRLVMIWERAE-IG----------SGTVFGS----------T----------------------------------- 110 (942)
T ss_pred ccCcceEEEeeecc-cC----------Ccccccc----------c-----------------------------------
Confidence 99999999998432 10 0000000 0
Q ss_pred CCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCC
Q 001534 553 GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (1058)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1058)
+ +...+ ...+.+..+.+|.. .|..++|+|++.++++++.|++|.+||..+.+.+..+..|..
T Consensus 111 ------g-----~~~~v-----E~wk~~~~l~~H~~-DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s- 172 (942)
T KOG0973|consen 111 ------G-----GAKNV-----ESWKVVSILRGHDS-DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS- 172 (942)
T ss_pred ------c-----ccccc-----ceeeEEEEEecCCC-ccceeccCCCccEEEEecccceEEEEccccceeeeeeecccc-
Confidence 0 01112 22345567777877 899999999999999999999999999999999999987765
Q ss_pred CCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCC
Q 001534 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLER 712 (1058)
Q Consensus 633 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1058)
.|..+.|.|-|+++|+-++|++|++|++.+- .+.+.+.++-..
T Consensus 173 -~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw-~i~k~It~pf~~----------------------------------- 215 (942)
T KOG0973|consen 173 -LVKGVSWDPIGKYFASQSDDRTLKVWRTSDW-GIEKSITKPFEE----------------------------------- 215 (942)
T ss_pred -cccceEECCccCeeeeecCCceEEEEEcccc-eeeEeeccchhh-----------------------------------
Confidence 7999999999999999999999999986442 122221111000
Q ss_pred CCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeec
Q 001534 713 PDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS 792 (1058)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 792 (1058)
T Consensus 216 -------------------------------------------------------------------------------- 215 (942)
T KOG0973|consen 216 -------------------------------------------------------------------------------- 215 (942)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe--C---CeEEEEE
Q 001534 793 NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--G---GKVSLFN 867 (1058)
Q Consensus 793 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s--d---g~i~iwd 867 (1058)
..+ ......+.|||||++|++.. + .++.|.+
T Consensus 216 ----------------------------------------~~~----~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie 251 (942)
T KOG0973|consen 216 ----------------------------------------SPL----TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE 251 (942)
T ss_pred ----------------------------------------CCC----cceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence 000 33355677888888887764 2 3588999
Q ss_pred CCCceEEEEecCCCCCeEEEEEeCC----CCC------------EEEEEeCCCeEEEEEcccceeEEEEe-CCCCCeEEE
Q 001534 868 MMTFKVMTMFMSPPPAATFLAFHPQ----DNN------------IIAIGMEDSSVQIYNVRVDEVKTKLK-GHQNRITGL 930 (1058)
Q Consensus 868 ~~~~~~~~~~~~~~~~i~~l~~s~~----~~~------------~lasg~~dg~I~iwd~~~~~~~~~l~-~h~~~v~~l 930 (1058)
..+.+.-..|.||..++.+++|+|. ..+ .+|+|+.|++|.||.....+++..+. --...|..+
T Consensus 252 R~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~Dm 331 (942)
T KOG0973|consen 252 RGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDM 331 (942)
T ss_pred cCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeee
Confidence 9899988999999999999999972 111 78999999999999987666655432 235679999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001534 931 AFSPTLNALVSSGADAQLCMWSIDKW 956 (1058)
Q Consensus 931 ~~spd~~~l~s~s~D~~i~iwd~~~~ 956 (1058)
+|+|||-.|..+|.||+|.+...+..
T Consensus 332 sWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 332 SWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred eEcCCCCeEEEEecCCeEEEEEcchH
Confidence 99999999999999999999998754
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.9e-26 Score=215.49 Aligned_cols=297 Identities=15% Similarity=0.201 Sum_probs=243.8
Q ss_pred cceeEeec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEE
Q 001534 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1058)
Q Consensus 337 ~~~~~~~~-h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 415 (1058)
.++++.+. |.+.|+.++-..... ++.+++.|.+.+||.+++|.++.. +.||.+.|++++
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence 44556666 999999999988776 899999999999999999999875 789999999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEe------cC------------------------------C-CceeeeeeeecCcCCeEE
Q 001534 416 WGPDGLMLGVAFSKHIVHLYTY------NP------------------------------T-GELRQHLEIDAHVGGVND 458 (1058)
Q Consensus 416 ~spd~~~l~~~~~d~~i~vwd~------~~------------------------------~-~~~~~~~~~~~h~~~v~~ 458 (1058)
|++.+.++++++.|++..||.. .. + ..-.+...+.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999962 11 0 001123467899999999
Q ss_pred EEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCC-CceEEe
Q 001534 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDY 537 (1058)
Q Consensus 459 ~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~-~~~~~~ 537 (1058)
..|...|+ .+++++.|.+..+||+++|..+..+.||....+-++-+|.. .++++.+.|.+.++||++.. .....+
T Consensus 278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeee
Confidence 99999998 69999999999999999999999999999999999988765 78999999999999999853 334578
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCc-eeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 001534 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1058)
Q Consensus 538 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 616 (1058)
.+|...|+++.|..+. .+++++ .|.+|++||+++.+ ++.++.... +++.++.+..++.++.--++..|++||
T Consensus 354 QGHtdtVTS~vF~~dd-~vVSgS----DDrTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDD-RVVSGS----DDRTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccccceeEEEEecCC-ceeecC----CCceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEEe
Confidence 9999999999997765 455665 38899999998754 566665443 688899998888888888999999999
Q ss_pred CCCCceEEEE--ecCCCCCCcceEEEeCCC--CEEEEEECCCcEEEEECCCC
Q 001534 617 MDNMNMLTTV--DADGGLPASPRLRFNKEG--SLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 617 ~~~~~~~~~~--~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw~~~~~ 664 (1058)
+...++...- ...++...|.|++|..+. .-|++++.|..+.-|.+...
T Consensus 427 lnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 427 LNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9865433222 234455679999998643 35889999999999988654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=226.50 Aligned_cols=300 Identities=14% Similarity=0.238 Sum_probs=229.9
Q ss_pred eEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCc----eeEeecCCCCCceeEEEEcCCCCEEEEEeCC
Q 001534 534 RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE 609 (1058)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1058)
...+..+...|.++++.|.|..+++|+. |-.|++||+.... ..+.+.......|+++.|++.|..+++.+..
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~----Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSL----DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccc----cceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence 3456667779999999999999999986 6679999987422 2233333344479999999999999999989
Q ss_pred CeEEEEECCCCceEEEEec----------CCCCCCcceEEEeCC-CCEEEEEECCCcEEEEECCCCceeeecccCCcccc
Q 001534 610 FQIKFWDMDNMNMLTTVDA----------DGGLPASPRLRFNKE-GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678 (1058)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~----------~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 678 (1058)
...+|+|-...+......+ .+|...+++.+|+|+ ...+++++.||++|+|++.+.+...+.+.....
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~-- 313 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA-- 313 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC--
Confidence 9999999876665554432 356677899999995 457889999999999999876433333322110
Q ss_pred cCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCc
Q 001534 679 NRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDP 758 (1058)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~ 758 (1058)
T Consensus 314 -------------------------------------------------------------------------------- 313 (641)
T KOG0772|consen 314 -------------------------------------------------------------------------------- 313 (641)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCC
Q 001534 759 SQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKP 838 (1058)
Q Consensus 759 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 838 (1058)
.+..-.++.++|++||+.|++++.||.|.+|+.......+.-. ...+|
T Consensus 314 ----------~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~----------------------vk~AH 361 (641)
T KOG0772|consen 314 ----------GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMK----------------------VKDAH 361 (641)
T ss_pred ----------CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceE----------------------eeecc
Confidence 1134467889999999999999999999999874322222111 11225
Q ss_pred -CCCCeeEEEEccCCcEEEEEe-CCeEEEEECCCc-eEEEEecCCC--CCeEEEEEeCCCCCEEEEEe------CCCeEE
Q 001534 839 -TEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF-KVMTMFMSPP--PAATFLAFHPQDNNIIAIGM------EDSSVQ 907 (1058)
Q Consensus 839 -~~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~-~~~~~~~~~~--~~i~~l~~s~~~~~~lasg~------~dg~I~ 907 (1058)
+...|+|++||+||++|++-+ |+++++||+... +++.+..+-. -.-+.++||| +.++|++|+ ..|+++
T Consensus 362 ~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~ 440 (641)
T KOG0772|consen 362 LPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLF 440 (641)
T ss_pred CCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEE
Confidence 134899999999999999998 999999999864 4555444422 2467899999 899999986 346899
Q ss_pred EEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001534 908 IYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1058)
Q Consensus 908 iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd 952 (1058)
+||..+.+.+..+.-....|..+.|+|.=+.|..++.||++++|=
T Consensus 441 f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 441 FFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 999999998888887788899999999988899999999999873
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-25 Score=208.81 Aligned_cols=249 Identities=16% Similarity=0.185 Sum_probs=195.7
Q ss_pred cCCCcCeEEEEECC-CCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEE
Q 001534 405 NDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1058)
Q Consensus 405 ~~h~~~v~~~~~sp-d~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd 483 (1058)
....+.|.+++||| ...+++++|.|++||+|+++....... +....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 34678899999999 555677889999999999988433322 34567999999999999998 799999999999999
Q ss_pred cCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001534 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1058)
Q Consensus 484 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1058)
+.++ .+..+..|.++|.++.|-+...-..|++||.|.+|+.||++...++..+..++ .++++..- ...++++.
T Consensus 101 L~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv~--~pm~vVat--- 173 (347)
T KOG0647|consen 101 LASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADVL--YPMAVVAT--- 173 (347)
T ss_pred ccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhcc--CceeEEEe---
Confidence 9999 56677789999999999877766799999999999999999888888777654 45555432 23444444
Q ss_pred CCCceEEEeeCCCCce-eEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceEEEEecCCC-------CC
Q 001534 564 EGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGG-------LP 633 (1058)
Q Consensus 564 ~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-------~~ 633 (1058)
.+..|.+|+++.+.. .+.......-.++|++..++....+.|+-+|.+.|..+..+ +.-..++.|.. ..
T Consensus 174 -a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 174 -AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred -cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 266799999976542 22222223336889999998888899999999999998886 44445555542 33
Q ss_pred CcceEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001534 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 634 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
.|++++|+|....|++++.||++.+||-...
T Consensus 253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred EecceEeecccceEEEecCCceEEEecchhh
Confidence 5788999999999999999999999997544
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-25 Score=244.17 Aligned_cols=245 Identities=20% Similarity=0.303 Sum_probs=214.1
Q ss_pred CCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001534 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1058)
Q Consensus 406 ~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~ 485 (1058)
.+...+.+..|. +.++++++.|++|++||..++..+.. .+.+|.+.|++++|..-+. .+++|+.|.++++||..
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS 279 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence 356778888887 67899999999999999999876652 3889999999999987455 89999999999999999
Q ss_pred CCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001534 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1058)
Q Consensus 486 ~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1058)
+|.+.+.+.+|...|.++...+ ..+++|+.|.+|++|++.++..+..+.+|..+|.++..+ +.++++++.
T Consensus 280 sg~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~---- 349 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY---- 349 (537)
T ss_pred CCcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----
Confidence 9999999999999999998653 578889999999999999999999999999999999987 889999885
Q ss_pred CceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEecCCCCCCcceEEEeCCC
Q 001534 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNKEG 644 (1058)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1058)
++.|.+||+.+++++..+.+|.. .|.++.+.+. +++++|+.|++|++||+.+. +++.++..|... +.. ....+
T Consensus 350 d~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--v~~--l~~~~ 423 (537)
T KOG0274|consen 350 DGTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--VSS--LLLRD 423 (537)
T ss_pred CceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc--ccc--ccccc
Confidence 77899999999999999999888 8999988765 89999999999999999999 889988877652 333 33468
Q ss_pred CEEEEEECCCcEEEEECCCCceeeecccC
Q 001534 645 SLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1058)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 673 (1058)
++|++++.||+|++||..++ .+.+.+.+
T Consensus 424 ~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~~ 451 (537)
T KOG0274|consen 424 NFLVSSSADGTIKLWDAEEG-ECLRTLEG 451 (537)
T ss_pred ceeEeccccccEEEeecccC-ceeeeecc
Confidence 89999999999999999888 55555544
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-25 Score=231.41 Aligned_cols=283 Identities=15% Similarity=0.294 Sum_probs=238.9
Q ss_pred ceeEeec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEE-EE
Q 001534 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR-CV 415 (1058)
Q Consensus 338 ~~~~~~~-h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~ 415 (1058)
+..+.++ |+..|..+++.+.. .+++++.||++++|+-..++.+.. ..+.+|.+.|.+ ++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSIC 65 (745)
T ss_pred eeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccce
Confidence 4555666 89999999988876 477899999999999877665442 225678888887 88
Q ss_pred ECC-CCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEee
Q 001534 416 WGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1058)
Q Consensus 416 ~sp-d~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~ 494 (1058)
+-+ ++-.|++|+.|++|.+|...+...+. .+.+|...|.+++...++. +++||.|.++++|- .+++...+.
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~ 137 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQ 137 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccC
Confidence 886 55579999999999999999987776 8899999999999877764 89999999999996 567777899
Q ss_pred CCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeC
Q 001534 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1058)
Q Consensus 495 ~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1058)
+|+..|++++.-|. +.++|||.|.+|++|.- ++...++.+|...|..+++-+++.+ ++|+ +|+.|++|++
T Consensus 138 gH~asVWAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~f-lScs----NDg~Ir~w~~ 207 (745)
T KOG0301|consen 138 GHTASVWAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHF-LSCS----NDGSIRLWDL 207 (745)
T ss_pred CcchheeeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCe-Eeec----CCceEEEEec
Confidence 99999999998765 48999999999999954 6677889999999999999887655 4555 5999999999
Q ss_pred CCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCC
Q 001534 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1058)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 654 (1058)
+|+.+.++.+|.. .+.+++..+++..++++|+|++++||+.. ++.+.+..+.. .|.++.+-++|. +++|+.||
T Consensus 208 -~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SDG 280 (745)
T KOG0301|consen 208 -DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSDG 280 (745)
T ss_pred -cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccCc
Confidence 7999999999998 89999988888999999999999999987 67777776654 578888888886 67888999
Q ss_pred cEEEEECCCC
Q 001534 655 GIKILANSDG 664 (1058)
Q Consensus 655 ~i~iw~~~~~ 664 (1058)
.||||.....
T Consensus 281 ~VrVfT~~k~ 290 (745)
T KOG0301|consen 281 RVRVFTVDKD 290 (745)
T ss_pred eEEEEEeccc
Confidence 9999987644
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-25 Score=209.67 Aligned_cols=312 Identities=14% Similarity=0.126 Sum_probs=210.6
Q ss_pred cccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCC-----ceeeeeeeecCcCCeEEEEEecCCCceEEEEEcC
Q 001534 401 NALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475 (1058)
Q Consensus 401 ~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~-----~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~ 475 (1058)
...+++|...|++++||.||++||+++.|++|++|+++.-. +++.... -+..+.+.|+||-+. +++++-.
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~V~FapDc~s-~vv~~~~ 153 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTRVVFAPDCKS-VVVSVKR 153 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc----CCCceEEEECCCcce-EEEEEcc
Confidence 34589999999999999999999999999999999997632 1221111 124578999999986 5666666
Q ss_pred CCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCE
Q 001534 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1058)
Q Consensus 476 d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1058)
..++++|-+...+- ..+. ...+. ||--. .-..|...+..+-...++++
T Consensus 154 g~~l~vyk~~K~~d-G~~~-----~~~v~---------------------~D~~~-----f~~kh~v~~i~iGiA~~~k~ 201 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTD-GSGS-----HHFVH---------------------IDNLE-----FERKHQVDIINIGIAGNAKY 201 (420)
T ss_pred CCEEEEEEeeeccc-CCCC-----ccccc---------------------ccccc-----cchhcccceEEEeecCCceE
Confidence 77888887543221 1111 11111 21000 00123345555666778888
Q ss_pred EEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECC---CC---ceEEEEecC
Q 001534 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD---NM---NMLTTVDAD 629 (1058)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~---~~~~~~~~~ 629 (1058)
+++++. +..|.+|+++ |+.+..+..... .-...+.+|+|+++++++..-.|++|.+- .| +....+...
T Consensus 202 imsas~----dt~i~lw~lk-Gq~L~~idtnq~-~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk 275 (420)
T KOG2096|consen 202 IMSASL----DTKICLWDLK-GQLLQSIDTNQS-SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK 275 (420)
T ss_pred EEEecC----CCcEEEEecC-Cceeeeeccccc-cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec
Confidence 998875 6679999998 888888776655 55678899999999999988889999863 22 223344555
Q ss_pred CCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCC
Q 001534 630 GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPT 709 (1058)
Q Consensus 630 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1058)
+|...|..++|+++...+++.+.||++++||.+-....-+ ..
T Consensus 276 GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q-----Dp--------------------------------- 317 (420)
T KOG2096|consen 276 GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ-----DP--------------------------------- 317 (420)
T ss_pred cchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC-----Cc---------------------------------
Confidence 6666899999999999999999999999999864321100 00
Q ss_pred CCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEE
Q 001534 710 LERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLA 789 (1058)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 789 (1058)
..++.. ..|.....+....++++|.|+.|++
T Consensus 318 -----------------------------------k~Lk~g--------------~~pl~aag~~p~RL~lsP~g~~lA~ 348 (420)
T KOG2096|consen 318 -----------------------------------KILKEG--------------SAPLHAAGSEPVRLELSPSGDSLAV 348 (420)
T ss_pred -----------------------------------hHhhcC--------------CcchhhcCCCceEEEeCCCCcEEEe
Confidence 000000 0000112233447899999997776
Q ss_pred eeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEeCCeEEEEEC
Q 001534 790 LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNM 868 (1058)
Q Consensus 790 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~sdg~i~iwd~ 868 (1058)
+... .+.++. .++|+.....-.. | ...|.+++|++||+++|+++|..++++.-
T Consensus 349 s~gs-~l~~~~----------------------se~g~~~~~~e~~--h-~~~Is~is~~~~g~~~atcGdr~vrv~~n 401 (420)
T KOG2096|consen 349 SFGS-DLKVFA----------------------SEDGKDYPELEDI--H-STTISSISYSSDGKYIATCGDRYVRVIRN 401 (420)
T ss_pred ecCC-ceEEEE----------------------cccCccchhHHHh--h-cCceeeEEecCCCcEEeeecceeeeeecC
Confidence 6543 455554 3444433322222 7 89999999999999999999999998873
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=224.66 Aligned_cols=284 Identities=15% Similarity=0.195 Sum_probs=231.7
Q ss_pred CCCcEEEEEEcCCCCE-EEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001534 540 PGNWCTMMAYSADGTR-LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1058)
Q Consensus 540 ~~~~v~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 618 (1058)
....|.+++|+|...+ +++.+ ...+.+|+..+....+.+..... .+.+++|..||+.+++|+..|.|+|||+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-----S~rvqly~~~~~~~~k~~srFk~-~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-----SVRVQLYSSVTRSVRKTFSRFKD-VVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-----ccEEEEEecchhhhhhhHHhhcc-ceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 4558999999996654 33332 45599999988777777776666 89999999999999999999999999987
Q ss_pred CCceEEEEecCCCCCCcceEEEeC-CCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccC
Q 001534 619 NMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALG 697 (1058)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1058)
+...+..+..|.. ++..+.|+| ++..+++|++|+.+++||+.+... ...+.
T Consensus 99 ~r~iLR~~~ah~a--pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~------------------------- 150 (487)
T KOG0310|consen 99 SRVILRQLYAHQA--PVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELS------------------------- 150 (487)
T ss_pred cHHHHHHHhhccC--ceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEec-------------------------
Confidence 7667777776654 789999999 566788888999999999987731 11111
Q ss_pred CCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEE
Q 001534 698 PASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVR 777 (1058)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~ 777 (1058)
+|.+.|.+
T Consensus 151 ------------------------------------------------------------------------~htDYVR~ 158 (487)
T KOG0310|consen 151 ------------------------------------------------------------------------GHTDYVRC 158 (487)
T ss_pred ------------------------------------------------------------------------CCcceeEe
Confidence 27888999
Q ss_pred EEEccCCc-eEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEE
Q 001534 778 LIYTNSGL-SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 856 (1058)
Q Consensus 778 l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la 856 (1058)
.+++|... .+++|+.||.|++||+... +.. ....+| ..+|..+.+-|.|..+|
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~--------------------~~~-----v~elnh-g~pVe~vl~lpsgs~ia 212 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSL--------------------TSR-----VVELNH-GCPVESVLALPSGSLIA 212 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccC--------------------Cce-----eEEecC-CCceeeEEEcCCCCEEE
Confidence 99998754 7889999999999987631 111 112237 89999999999999999
Q ss_pred EEeCCeEEEEECCC-ceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEEEEEcCC
Q 001534 857 SASGGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935 (1058)
Q Consensus 857 ~~sdg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd 935 (1058)
+++.+.|++||+.+ ++.+..+..|...|+|+++.. ++..|.+|+-|+.|++||+.+.+.+..+. -.++|.+++.|||
T Consensus 213 sAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~d 290 (487)
T KOG0310|consen 213 SAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPD 290 (487)
T ss_pred EcCCCeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCC
Confidence 99999999999985 455555666999999999999 88999999999999999999989888887 6789999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCc
Q 001534 936 LNALVSSGADAQLCMWSIDKWE 957 (1058)
Q Consensus 936 ~~~l~s~s~D~~i~iwd~~~~~ 957 (1058)
++.++.|..||.+.+-+....+
T Consensus 291 d~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 291 DQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred CceEEEecccceeeeehhhccc
Confidence 9999999999998877655544
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-21 Score=211.53 Aligned_cols=277 Identities=15% Similarity=0.202 Sum_probs=222.6
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcc-ccccCcceeecccccccccccccccCCCcCeEEEEECCCCCE
Q 001534 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE-RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1058)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~ 422 (1058)
.|..+-+.++|.|+|+ ++.+++.||.|++|+..... .... +.-+...|.+++- ++.+
T Consensus 11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~t-------------------i~~~g~~v~~ia~--~s~~ 68 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPET-------------------IDISGELVSSIAC--YSNH 68 (933)
T ss_pred hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCch-------------------hhccCceeEEEee--cccc
Confidence 4778899999999998 67788889999999988763 2211 2226777887776 5559
Q ss_pred EEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEE
Q 001534 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1058)
Q Consensus 423 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~ 502 (1058)
|++|+.+++|.+|...+++.-. .+...+-++++++|+.+|+ +++.||.|-.|++-+..+......+++|.++|.+
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred eEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceee
Confidence 9999999999999999876543 3344567899999999999 8999999999999999999999999999999999
Q ss_pred EEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecC-------C-CCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeC
Q 001534 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------P-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1058)
Q Consensus 503 ~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~-------~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1058)
+.|+|. +++|++.+.||.|++||+.++.....+.. . ...+..++|+|+|..+++.+. ++.|.+|+.
T Consensus 144 l~~~p~--~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r 217 (933)
T KOG1274|consen 144 LSYDPK--GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSR 217 (933)
T ss_pred eeEcCC--CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEcc
Confidence 999965 48999999999999999998776654432 1 346778999999776666654 788999999
Q ss_pred CCCceeEeecCCCCC-ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECC
Q 001534 575 SEGAIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1058)
Q Consensus 575 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1058)
.+......+...... .+..++|+|+|.||++++.||.|.|||.++.+. |.....|.+++|.|+...+-.-...
T Consensus 218 ~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~ 291 (933)
T KOG1274|consen 218 KGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITAL 291 (933)
T ss_pred CCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeec
Confidence 999888887765433 388999999999999999999999999997222 3334578999999988766555444
Q ss_pred CcEEEE
Q 001534 654 NGIKIL 659 (1058)
Q Consensus 654 g~i~iw 659 (1058)
|...+|
T Consensus 292 g~~~~~ 297 (933)
T KOG1274|consen 292 GTLGVS 297 (933)
T ss_pred cccccC
Confidence 444433
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-24 Score=206.86 Aligned_cols=244 Identities=18% Similarity=0.240 Sum_probs=206.9
Q ss_pred cccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEE
Q 001534 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1058)
Q Consensus 403 ~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vw 482 (1058)
.+..|.++|+++|. ++.++|+|+.|-+|+|||+.....+. .+-.|.+.|+++.|.++-....|++|+.||.|.+|
T Consensus 38 ~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 38 AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 36789999999999 78999999999999999999987666 66689999999999988643369999999999999
Q ss_pred EcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecC
Q 001534 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1058)
Q Consensus 483 d~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1058)
+...-.++.++++|.+.|+.++++|++ ++.++.+.|+.++.||+-.++.-+...... ..+.+.|+|.|.+++..+
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~-- 187 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSG-- 187 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEe--
Confidence 999999999999999999999999765 899999999999999999988777665433 334599999999888876
Q ss_pred CCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEE--
Q 001534 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF-- 640 (1058)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-- 640 (1058)
...|-+|.+.+......+.... .+.++.|. ++..|++|++|+.|.+||..+..+...+..|.. .|..+.+
T Consensus 188 ---~~~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~~ 259 (362)
T KOG0294|consen 188 ---RNKIDIYQLDNASVFREIENPK--RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASYT 259 (362)
T ss_pred ---ccEEEEEecccHhHhhhhhccc--cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEEe
Confidence 5569999988766655554432 46667665 567899999999999999999888888887765 6787773
Q ss_pred eCCCCEEEEEECCCcEEEEECCCC
Q 001534 641 NKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
.|++.+|++++.||.|++||+...
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEEeccCceEEEEEcccc
Confidence 468899999999999999999765
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=206.60 Aligned_cols=266 Identities=16% Similarity=0.177 Sum_probs=192.8
Q ss_pred CceEEEEEccCCceEEEeec-cceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccC
Q 001534 773 SKVVRLIYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 851 (1058)
Q Consensus 773 ~~i~~l~~s~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d 851 (1058)
+..+.++|+||.+.++.... ...+++|.+..... |..... ..-||-. . + ...| .-.+..+-...+
T Consensus 133 dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~~--~v~~D~~--~-----f-~~kh-~v~~i~iGiA~~ 198 (420)
T KOG2096|consen 133 DHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSHH--FVHIDNL--E-----F-ERKH-QVDIINIGIAGN 198 (420)
T ss_pred CCceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCcc--ccccccc--c-----c-chhc-ccceEEEeecCC
Confidence 35678999999887766555 46899987754321 221111 0011100 0 1 1125 677788888889
Q ss_pred CcEEEEEe-CCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcc---cc-----eeEEEEeC
Q 001534 852 DSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR---VD-----EVKTKLKG 922 (1058)
Q Consensus 852 ~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~---~~-----~~~~~l~~ 922 (1058)
+++|++++ |..|.+|++. |+.+..+......-...+.|| +|++||+++---.|++|++- .| ..+..|+|
T Consensus 199 ~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG 276 (420)
T KOG2096|consen 199 AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG 276 (420)
T ss_pred ceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc
Confidence 99999999 8889999998 899988887777788899999 99999999998999999874 23 23457899
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC----CccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEEeCCeEE
Q 001534 923 HQNRITGLAFSPTLNALVSSGADAQLCMWSIDK----WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQIS 998 (1058)
Q Consensus 923 h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~~d~~i~ 998 (1058)
|...|..++|||+.+.++|+|.||+++|||++- ++..+........-|... +.-..+..||.|+.|+++....+.
T Consensus 277 H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag-~~p~RL~lsP~g~~lA~s~gs~l~ 355 (420)
T KOG2096|consen 277 HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAG-SEPVRLELSPSGDSLAVSFGSDLK 355 (420)
T ss_pred chhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcC-CCceEEEeCCCCcEEEeecCCceE
Confidence 999999999999999999999999999999863 222211111101111111 333589999999999999999999
Q ss_pred EEeC-CCCeeeEE---eeccccceEEccCCcEEEEEECCCeEEEEcCCCCCccCCcccccccc
Q 001534 999 VYDS-KLECSRSV---SFLSLCPYVFGVSSIFLLSTLTKLSVAVHDPLMKFDRKRKVPWRGVK 1057 (1058)
Q Consensus 999 vwd~-~~~~~~~~---~~~~~~~~~~s~~~~~l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~ 1057 (1058)
+|.. +++....+ ....++++.|+++|+|+++ ..|+.+++.-.. |...++...|.|.+
T Consensus 356 ~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~at-cGdr~vrv~~nt-pg~~~~V~~~~~~l 416 (420)
T KOG2096|consen 356 VFASEDGKDYPELEDIHSTTISSISYSSDGKYIAT-CGDRYVRVIRNT-PGWHSRVVKLNREL 416 (420)
T ss_pred EEEcccCccchhHHHhhcCceeeEEecCCCcEEee-ecceeeeeecCC-CchhhHHHHhhccc
Confidence 9999 66554444 3356999999999999999 567889988643 45555666666654
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-24 Score=205.60 Aligned_cols=268 Identities=19% Similarity=0.268 Sum_probs=215.8
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEE
Q 001534 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1058)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~ 425 (1058)
.+.|+.|.|+|.+..||+ ++-||++++||+...+... .-.|..++.+++|.+ ...+++
T Consensus 13 ~d~IS~v~f~~~~~~LLv-ssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLV-SSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hhceeeEEEcCcCCcEEE-EeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEEE
Confidence 578999999999886555 5799999999999875543 234899999999987 567889
Q ss_pred EeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEe
Q 001534 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1058)
Q Consensus 426 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~ 505 (1058)
|+-||.|+.+|+.++... .+..|..+|.|+.+++... .+++||.|++|++||.+.......+. ....|.++..
T Consensus 71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 999999999999997654 5667999999999998776 79999999999999998765555554 3448888875
Q ss_pred cccCCccEEEEEeCCCeEEEEeCCCCCceEEecC--CCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCC----ce
Q 001534 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG----AI 579 (1058)
Q Consensus 506 ~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~----~~ 579 (1058)
. |+.|+.|+.|..+.+||+++......... -.-.+.++++-|++.-.++++. +|.|.+=.+... ..
T Consensus 144 ~----g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 144 S----GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred c----CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhhh
Confidence 4 36899999999999999998776653222 2337889999998887777765 666665554443 34
Q ss_pred eEeecCCCCC--------ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEE
Q 001534 580 KRTYSGFRKR--------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1058)
Q Consensus 580 ~~~~~~~~~~--------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 651 (1058)
...|+.|... +|++++|+|-...|++||.||.|.+||+.+.+.+..+.... ..|..++|+.+|..||+++
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~--~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE--TSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC--CceEEEEeccCCCeEEEEe
Confidence 4456666432 68999999999999999999999999999999888886553 3689999999999999997
Q ss_pred C
Q 001534 652 S 652 (1058)
Q Consensus 652 ~ 652 (1058)
.
T Consensus 294 s 294 (323)
T KOG1036|consen 294 S 294 (323)
T ss_pred c
Confidence 5
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-25 Score=209.13 Aligned_cols=341 Identities=15% Similarity=0.269 Sum_probs=246.6
Q ss_pred EEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeE
Q 001534 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1058)
Q Consensus 422 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~ 501 (1058)
.+++...++++.. +....+.||...|+.++...... ++.+++.|.+.+||.+++|+|+.++.||.+.|+
T Consensus 126 rivssFk~~t~~~---------~lvre~~GHkDGiW~Vaa~~tqp--i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVN 194 (481)
T KOG0300|consen 126 RIVSSFKDGTVKF---------RLVRELEGHKDGIWHVAADSTQP--ICGTASADHTARIWSLESGACLATYTGHTGSVN 194 (481)
T ss_pred hheeeecCCceeE---------eehhhhcccccceeeehhhcCCc--ceeecccccceeEEeeccccceeeeccccccee
Confidence 3455556665332 22237789999999999876555 899999999999999999999999999999999
Q ss_pred EEEecccCCccEEEEEeCCCeEEEEeCC----CCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCC
Q 001534 502 SVCPHHKESIQFIFSTAIDGKIKAWLYD----YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1058)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~d~~i~~wd~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1058)
++.|++.+ .++++++.|++-++|... .++.... ..|.+. ....-+........++. +....+| .
T Consensus 195 sikfh~s~--~L~lTaSGD~taHIW~~av~~~vP~~~a~-~~hSsE-eE~e~sDe~~~d~d~~~-~sD~~ti-------R 262 (481)
T KOG0300|consen 195 SIKFHNSG--LLLLTASGDETAHIWKAAVNWEVPSNNAP-SDHSSE-EEEEHSDEHNRDTDSSE-KSDGHTI-------R 262 (481)
T ss_pred eEEecccc--ceEEEccCCcchHHHHHhhcCcCCCCCCC-CCCCch-hhhhccccccccccccc-ccCCcee-------e
Confidence 99999654 899999999999999632 1111000 000000 00000000000000000 0001112 2
Q ss_pred ceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEE
Q 001534 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1058)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 657 (1058)
.++..+.+|.. .|.+..|-..|+.+++++.|.+..+||+++++++..+.+|.+ ..+.++-+|..+++++.+.|.+.+
T Consensus 263 vPl~~ltgH~~-vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~--ELtHcstHptQrLVvTsSrDtTFR 339 (481)
T KOG0300|consen 263 VPLMRLTGHRA-VVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDS--ELTHCSTHPTQRLVVTSSRDTTFR 339 (481)
T ss_pred eeeeeeecccc-ceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcch--hccccccCCcceEEEEeccCceeE
Confidence 46678889887 888999999999999999999999999999999999998876 678889999999999999999999
Q ss_pred EEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCc
Q 001534 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1058)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1058)
+||+......+..
T Consensus 340 LWDFReaI~sV~V------------------------------------------------------------------- 352 (481)
T KOG0300|consen 340 LWDFREAIQSVAV------------------------------------------------------------------- 352 (481)
T ss_pred eccchhhcceeee-------------------------------------------------------------------
Confidence 9998633111111
Q ss_pred cccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCccccccc
Q 001534 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVA 817 (1058)
Q Consensus 738 ~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 817 (1058)
T Consensus 353 -------------------------------------------------------------------------------- 352 (481)
T KOG0300|consen 353 -------------------------------------------------------------------------------- 352 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEECCCce-EEEEecCCCCCeEEEEEeCCCCC
Q 001534 818 PQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK-VMTMFMSPPPAATFLAFHPQDNN 895 (1058)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~ 895 (1058)
+.+ | ...|+++.|..|.+ +++|+ |.+|++||+.+.+ .+.+++ ..++++.++.+. ++.
T Consensus 353 ---------------FQG--H-tdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~-g~~ 411 (481)
T KOG0300|consen 353 ---------------FQG--H-TDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSK-GHP 411 (481)
T ss_pred ---------------ecc--c-ccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeee-cCCccceeEeec-CCc
Confidence 223 5 66677777766554 44555 7788888887643 344444 567899999998 888
Q ss_pred EEEEEeCCCeEEEEEcccceeEE----EEeCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEeCCCC
Q 001534 896 IIAIGMEDSSVQIYNVRVDEVKT----KLKGHQNRITGLAFSPTLN--ALVSSGADAQLCMWSIDKW 956 (1058)
Q Consensus 896 ~lasg~~dg~I~iwd~~~~~~~~----~l~~h~~~v~~l~~spd~~--~l~s~s~D~~i~iwd~~~~ 956 (1058)
+||.--++..|++||++...+.+ .-++|..-|+|++|+.+-. -|++++.|..+.-|++...
T Consensus 412 iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 412 IIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 99999999999999997654322 2368999999999986543 4889999999999998763
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-22 Score=221.61 Aligned_cols=499 Identities=13% Similarity=0.163 Sum_probs=320.3
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCc-eEEEEEcCCCcEEEEEcCCCceeE
Q 001534 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ-LCIVTCGDDKMIKVWDVVAGRKQY 491 (1058)
Q Consensus 413 ~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~-~~l~s~~~d~~v~vwd~~~~~~~~ 491 (1058)
.-.||+|+++++....+ .|.||...++.++. .+.+|..+++.+.+.|.... .++++++.||.|++||...+..++
T Consensus 21 ~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred ccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 45689999998877554 79999999998887 78899999999999998764 478899999999999999999998
Q ss_pred EeeCCCCCeEEEEeccc--CCccEEEEEeCCCe------------EEEEeCCCCCceE--EecCCCCcEEEEEEcCCCCE
Q 001534 492 TFEGHEAPVYSVCPHHK--ESIQFIFSTAIDGK------------IKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTR 555 (1058)
Q Consensus 492 ~l~~~~~~v~~~~~~~~--~~~~~l~s~s~d~~------------i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~ 555 (1058)
++..+ .++.++.+.+. .....+..+..|.. ++-+.+.+..... .+..+. .-.++.+++.|.+
T Consensus 97 t~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~-~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 97 TFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ-EPKSIVDNNSGEF 174 (792)
T ss_pred EEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc-CCccEEEcCCceE
Confidence 88643 23333332111 00011111111211 1111111100000 011111 1357788888888
Q ss_pred EEEEecCCCCCceEEEeeCCCCcee---EeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCC--Cc--eEEEEec
Q 001534 556 LFSCGTSKEGESHLVEWNESEGAIK---RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--MN--MLTTVDA 628 (1058)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~--~~~~~~~ 628 (1058)
...+. +..+.+|+..++... +....++...+++.+++|++++++++..||.|.+|.--. .. ....+..
T Consensus 175 ~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 175 KGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred EEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 77765 556899998875411 112222332578999999999999999999999996433 22 2233343
Q ss_pred CCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCC
Q 001534 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708 (1058)
Q Consensus 629 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1058)
|...|.+++|+++|.+|++|+..|.+.+|.+.++.+.+
T Consensus 250 --H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf---------------------------------------- 287 (792)
T KOG1963|consen 250 --HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF---------------------------------------- 287 (792)
T ss_pred --cccccceeEEecCCceEeecccceEEEEEeecCCCccc----------------------------------------
Confidence 34579999999999999999999999999998873111
Q ss_pred CCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEE
Q 001534 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLL 788 (1058)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 788 (1058)
+|. -.+.|..+.+|||+...+
T Consensus 288 ---------------------------------------------------------LPR--Lgs~I~~i~vS~ds~~~s 308 (792)
T KOG1963|consen 288 ---------------------------------------------------------LPR--LGSPILHIVVSPDSDLYS 308 (792)
T ss_pred ---------------------------------------------------------ccc--cCCeeEEEEEcCCCCeEE
Confidence 111 346789999999999999
Q ss_pred EeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEE
Q 001534 789 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFN 867 (1058)
Q Consensus 789 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd 867 (1058)
...+|..|.+-...+-.. .. ++.-....+... + ... .+-.+.++++|.-+.++..+ .|.|.+||
T Consensus 309 l~~~DNqI~li~~~dl~~------k~--tIsgi~~~~~~~-----k-~~~-~~l~t~~~idpr~~~~vln~~~g~vQ~yd 373 (792)
T KOG1963|consen 309 LVLEDNQIHLIKASDLEI------KS--TISGIKPPTPST-----K-TRP-QSLTTGVSIDPRTNSLVLNGHPGHVQFYD 373 (792)
T ss_pred EEecCceEEEEeccchhh------hh--hccCccCCCccc-----c-ccc-cccceeEEEcCCCCceeecCCCceEEEEe
Confidence 999999998865532110 00 000000000000 0 002 55667899999544444444 89999999
Q ss_pred CCCceEEEEecC-----CC------CCeEEEEEeCCCCCEEEEEe--------CCC--eEEEEEcccce----eEE-EEe
Q 001534 868 MMTFKVMTMFMS-----PP------PAATFLAFHPQDNNIIAIGM--------EDS--SVQIYNVRVDE----VKT-KLK 921 (1058)
Q Consensus 868 ~~~~~~~~~~~~-----~~------~~i~~l~~s~~~~~~lasg~--------~dg--~I~iwd~~~~~----~~~-~l~ 921 (1058)
+.+.+.+..+.. +. -.+++++.+- .|.+++|+- .|| .+++|-..... +.. ...
T Consensus 374 l~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~ 452 (792)
T KOG1963|consen 374 LYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINN 452 (792)
T ss_pred ccccceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEec
Confidence 998776655431 12 2478888888 699999864 333 57889766432 222 234
Q ss_pred CCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCccc-----cceeeecCCCCCCCCCCeeEEEEcCCCcEEEEEeC
Q 001534 922 GHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKL-----KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 994 (1058)
Q Consensus 922 ~h~~~v~~l~~spd--~~~l~s~s~D~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~~d 994 (1058)
.|...+...++.+. ....+|+|.||.++||-+...+.+ ...+..+..-|. .++.+++||.||..|++|.|
T Consensus 453 PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~ 529 (792)
T KOG1963|consen 453 PHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFD 529 (792)
T ss_pred CCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecC
Confidence 68877777666542 237999999999999998432211 112222222222 67899999999999999999
Q ss_pred CeEEEEeC-CCCeeeE---EeeccccceEEcc--CCcEEEEEECCCeEEEEcCC
Q 001534 995 SQISVYDS-KLECSRS---VSFLSLCPYVFGV--SSIFLLSTLTKLSVAVHDPL 1042 (1058)
Q Consensus 995 ~~i~vwd~-~~~~~~~---~~~~~~~~~~~s~--~~~~l~~~~~d~~v~vw~~~ 1042 (1058)
++|.+||. +.+.+.. .........++.. .....+.......+.+|+++
T Consensus 530 ~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll 583 (792)
T KOG1963|consen 530 DTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLL 583 (792)
T ss_pred CEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhh
Confidence 99999999 4222222 2222233333322 11223444567889999876
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=219.17 Aligned_cols=287 Identities=17% Similarity=0.261 Sum_probs=228.9
Q ss_pred eeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEe
Q 001534 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (1058)
Q Consensus 448 ~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd 527 (1058)
.+.+|...|.+++=+|..-. .+++|+.||.|++||+.+..+..++..|.+.|..+++.. ..+++++.|.+|+.|-
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 56789999999999998733 799999999999999999999999999999999999875 5789999999999998
Q ss_pred CCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEE-EEE
Q 001534 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF-LAA 606 (1058)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~ 606 (1058)
++.. ...++. ....+..+.-+..+..+++||. .|.|||..-..++..+.-..+ .+.++.|+|....+ +++
T Consensus 136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASC 206 (433)
T ss_pred ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCCC-ceeEEecCCCcchheeee
Confidence 7763 222222 3445666776677788888863 399999998889998887766 89999999987654 556
Q ss_pred eCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCC
Q 001534 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686 (1058)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1058)
++|+.|.+||++.+.++..+...- .-+.++|+|.+-.+++|+.|..++.+|+..-.+.+...
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~--------------- 268 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH--------------- 268 (433)
T ss_pred ccCCceEEEecccCCccceeeeec---cccceecCccccceeeccccccceehhhhhhcccchhh---------------
Confidence 699999999999999988876543 34789999988889999999999999986542222111
Q ss_pred CCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEec
Q 001534 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766 (1058)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~ 766 (1058)
T Consensus 269 -------------------------------------------------------------------------------- 268 (433)
T KOG0268|consen 269 -------------------------------------------------------------------------------- 268 (433)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEE
Q 001534 767 PDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 846 (1058)
Q Consensus 767 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~ 846 (1058)
.+|.+.|.++.|||.|+.+++++-|.+|+||....+ .+..... .+. -..|.|+
T Consensus 269 --~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~-------------------~SRdiYh--tkR----Mq~V~~V 321 (433)
T KOG0268|consen 269 --KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG-------------------HSRDIYH--TKR----MQHVFCV 321 (433)
T ss_pred --cccceeEEEeccCCCcchhccccccceEEEeecCCC-------------------cchhhhh--Hhh----hheeeEE
Confidence 127788999999999999999999999999976532 1111111 011 4559999
Q ss_pred EEccCCcEEEEEe-CCeEEEEECCCceE
Q 001534 847 ALSKNDSYVMSAS-GGKVSLFNMMTFKV 873 (1058)
Q Consensus 847 ~~s~d~~~la~~s-dg~i~iwd~~~~~~ 873 (1058)
.||-|.+++++|| |+.|++|.....+.
T Consensus 322 k~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 322 KYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred EEeccccEEEecCCCcceeeeecchhhh
Confidence 9999999999999 79999999865443
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-25 Score=220.25 Aligned_cols=265 Identities=14% Similarity=0.251 Sum_probs=216.9
Q ss_pred eeEeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC
Q 001534 339 VVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1058)
Q Consensus 339 ~~~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 418 (1058)
....+.|.+.|+.+.+-|....++|+++..+.|.|||..+-....... ..-.+...+.+|...-..++|++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~---------~~~~Pdl~L~gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS---------GECRPDLRLKGHEKEGYGLSWNR 187 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc---------ccCCCceEEEeeccccccccccc
Confidence 345567999999999999999999999999999999998654332100 01112334789999888999999
Q ss_pred CCC-EEEEEeCCCeEEEEEecCCCc----eeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcC--CCceeE
Q 001534 419 DGL-MLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV--AGRKQY 491 (1058)
Q Consensus 419 d~~-~l~~~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~--~~~~~~ 491 (1058)
... .|++|+.|++|++||+..... +.....+.+|...|..++|++-... +|++++.|+.+.|||++ +.++.+
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcc
Confidence 544 889999999999999986543 5556678899999999999998877 89999999999999999 556667
Q ss_pred EeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCc-eEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEE
Q 001534 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1058)
Q Consensus 492 ~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1058)
...+|.+.|+|++|+|.. +..||+||.|++|.+||+++... ...+..|...|..+.|||....+++.+. .|+.+.
T Consensus 267 ~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~ 342 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLN 342 (422)
T ss_pred cccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEE
Confidence 888999999999999975 58999999999999999998654 5588999999999999998776665442 488999
Q ss_pred EeeCCCC--------------ceeEeecCCCCCceeEEEEcCCCCEEE-EEeCCCeEEEEECC
Q 001534 571 EWNESEG--------------AIKRTYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMD 618 (1058)
Q Consensus 571 ~wd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~ 618 (1058)
+||+..- +++..-.||.. .|..+.|+|+..+++ ++++|+.+.||.+.
T Consensus 343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9998641 23456667777 799999999988755 47899999999986
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-24 Score=213.38 Aligned_cols=239 Identities=17% Similarity=0.259 Sum_probs=213.4
Q ss_pred cCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCc
Q 001534 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1058)
Q Consensus 409 ~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~ 488 (1058)
..+.++...|....+++|+.|..+.++|...++.+. .+.||...|+.+.|+|+.. .+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 357888888888899999999999999999987776 8899999999999999998 79999999999999988888
Q ss_pred eeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCC--CCcEEEEEEcCCCCEEEEEecCCCCC
Q 001534 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRLFSCGTSKEGE 566 (1058)
Q Consensus 489 ~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1058)
.......|..+|+.+..+|++ .||++++.|++..+.|++++......... .-.+++.+|+|||..+.++.. |
T Consensus 295 ~~~~~~~h~~~V~~ls~h~tg--eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPTG--EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred CccccccccccceeeeeccCC--cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 888888999999999999654 89999999999999999998887766553 347899999999999999874 8
Q ss_pred ceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCE
Q 001534 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1058)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 646 (1058)
+.+++||+.++..+..|.+|.+ +|..++|+.+|-+|+++++|+.|++||++..+...++...... .+.++.|.+.|.+
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTY 446 (506)
T ss_pred ceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCe
Confidence 8999999999999999999888 9999999999999999999999999999999988888877654 7899999999999
Q ss_pred EEEEECCCcEEEEE
Q 001534 647 LAVTTSDNGIKILA 660 (1058)
Q Consensus 647 l~~~~~dg~i~iw~ 660 (1058)
|+.++.|=.|++++
T Consensus 447 L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 447 LGIAGSDLQVYICK 460 (506)
T ss_pred EEeecceeEEEEEe
Confidence 99997765555544
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=234.77 Aligned_cols=228 Identities=14% Similarity=0.220 Sum_probs=182.5
Q ss_pred EeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecC-CCceEEEEEcCCCcEEEEEcCCCc--------eeEEeeCC
Q 001534 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGR--------KQYTFEGH 496 (1058)
Q Consensus 426 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d-~~~~~l~s~~~d~~v~vwd~~~~~--------~~~~l~~~ 496 (1058)
|+.++.|++|+......+ ..+.+|.+.|.+++|+|+ +. +|++|+.|++|++||+.++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~v---~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPV---IKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCceE---EEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 567889999998765433 378899999999999997 55 89999999999999997642 34567899
Q ss_pred CCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCC
Q 001534 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1058)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1058)
...|.+++|+|... .++++++.|++|++||++++.....+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999998642 456899999999999999988776665 4568999999999999998763 78899999999
Q ss_pred CceeEeecCCCCCc----eeEEEEcCCCCEEEEEeCCC----eEEEEECCC-CceEEEEecCCCCCCcceEEEeCCCCEE
Q 001534 577 GAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDEF----QIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLL 647 (1058)
Q Consensus 577 ~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l 647 (1058)
++.+..+.+|.+.. +....|++++.+++++|.|+ .|+|||++. .+++..+..+.....+......++|.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999987632 12234568999999988664 799999995 5677666655543333333345568899
Q ss_pred EEEECCCcEEEEECCCC
Q 001534 648 AVTTSDNGIKILANSDG 664 (1058)
Q Consensus 648 ~~~~~dg~i~iw~~~~~ 664 (1058)
++|+.|+.|++|++..+
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 99999999999999766
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-25 Score=222.60 Aligned_cols=293 Identities=14% Similarity=0.212 Sum_probs=237.1
Q ss_pred ceeEeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEEC
Q 001534 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1058)
Q Consensus 338 ~~~~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 417 (1058)
+.+.++.|.+-|.++++|...+ .+.+|+ .|.|+|||+....... ++. .-........|.++..+
T Consensus 411 rq~~tL~HGEvVcAvtIS~~tr-hVyTgG-kgcVKVWdis~pg~k~--Pvs------------qLdcl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISQPGNKS--PVS------------QLDCLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcc-eeEecC-CCeEEEeeccCCCCCC--ccc------------cccccCcccceeeeEec
Confidence 4577888999999999999987 577776 6899999997642211 111 10122356679999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCC
Q 001534 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1058)
Q Consensus 418 pd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~ 497 (1058)
|||+.|++|+.-.++.|||+..... +...++....-...+++.+||.+ +.+++..||.|.|||+.+...++.|+||.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987543 22223444445678899999999 88899999999999999999999999999
Q ss_pred CCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCC
Q 001534 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1058)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1058)
..+.||.++ .+|..|.+|+-|++||.||++.+........ ...|.++..+|++.+++++-. ++.+.+.... +
T Consensus 552 DGascIdis--~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-k 623 (705)
T KOG0639|consen 552 DGASCIDIS--KDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-K 623 (705)
T ss_pred CCceeEEec--CCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecC-C
Confidence 999999998 5668999999999999999998777665442 457899999999999999864 5667766644 3
Q ss_pred ceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEE
Q 001534 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1058)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 657 (1058)
.....+..|.. .|.++.|.+.|+++++.|.|+-+..|....|..+...+.. ..|.++.++.|.+++++|+.|....
T Consensus 624 p~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 624 PEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred ccceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceE
Confidence 34445555665 8999999999999999999999999999988877766543 4689999999999999999998888
Q ss_pred EEEC
Q 001534 658 ILAN 661 (1058)
Q Consensus 658 iw~~ 661 (1058)
+|.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8864
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-25 Score=201.86 Aligned_cols=252 Identities=20% Similarity=0.285 Sum_probs=208.9
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEec--CCCceEEEEEcCCCcEEE
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKV 481 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~--d~~~~~l~s~~~d~~v~v 481 (1058)
-..|...|..+...-.|++|||++.|++|+|+.+..+.......+|.||.++|+.++|.. .|. +|++++.||.|.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIi 84 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEE
Confidence 467999999999988999999999999999999998877667779999999999999987 677 9999999999999
Q ss_pred EEcCCCce--eEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCc---eEEecCCCCcEEEEEEcCC---C
Q 001534 482 WDVVAGRK--QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSAD---G 553 (1058)
Q Consensus 482 wd~~~~~~--~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~---~ 553 (1058)
|.-.+|+- .+....|...|++++|.|.+-|-.|++++.||.|.+.+++..+. ......|.-.|++++|.|- |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 99777753 45667899999999999999999999999999999999887622 2245667889999999986 4
Q ss_pred -----------CEEEEEecCCCCCceEEEeeCCCCc--eeEeecCCCCCceeEEEEcCCC----CEEEEEeCCCeEEEEE
Q 001534 554 -----------TRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLGVVQFDTTR----NRFLAAGDEFQIKFWD 616 (1058)
Q Consensus 554 -----------~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd 616 (1058)
+.|++++. |..|++|+..+++ .-+.+.+|.+ .|+.++|.|.- ..+++++.||++.||.
T Consensus 165 ~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred cccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 56888885 7789999988764 4455888888 89999999964 4799999999999998
Q ss_pred CCCC-ceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECC
Q 001534 617 MDNM-NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1058)
Q Consensus 617 ~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1058)
.+.. +.-..-..+.....+..+.||..|+.|++++.|+.|.+|.-.
T Consensus 240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 7632 111111112233468899999999999999999999999754
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=200.66 Aligned_cols=266 Identities=17% Similarity=0.276 Sum_probs=214.9
Q ss_pred EEEEeCCCeEEEEeCCCCC------------ceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeE
Q 001534 514 IFSTAIDGKIKAWLYDYLG------------SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1058)
Q Consensus 514 l~s~s~d~~i~~wd~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1058)
|++|+....|.-+++.... +.+.+..|.+.+++++. ++.++++|+. |.+|++||++....+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGss----DetI~IYDm~k~~qlg 77 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSS----DETIHIYDMRKRKQLG 77 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCC----CCcEEEEeccchhhhc
Confidence 5555655555555544322 23456778889999997 4889999984 7789999999998888
Q ss_pred eecCCCCCceeEEEEcCCCC--EEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEE
Q 001534 582 TYSGFRKRSLGVVQFDTTRN--RFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1058)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 659 (1058)
.+..|.+ .|+++.|.++-. .|++|++||.|.+|+....+++..+..|.+ .|+.++.+|.++.-++.+.|+.++.|
T Consensus 78 ~ll~Hag-sitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~--~Vt~lsiHPS~KLALsVg~D~~lr~W 154 (362)
T KOG0294|consen 78 ILLSHAG-SITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG--QVTDLSIHPSGKLALSVGGDQVLRTW 154 (362)
T ss_pred ceecccc-ceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc--ccceeEecCCCceEEEEcCCceeeee
Confidence 8888877 899999998765 899999999999999999999999998877 59999999999999999999999999
Q ss_pred ECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccc
Q 001534 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPR 739 (1058)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1058)
++-+|+...
T Consensus 155 NLV~Gr~a~----------------------------------------------------------------------- 163 (362)
T KOG0294|consen 155 NLVRGRVAF----------------------------------------------------------------------- 163 (362)
T ss_pred hhhcCccce-----------------------------------------------------------------------
Confidence 987662100
Q ss_pred cccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCccccccccc
Q 001534 740 VAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQ 819 (1058)
Q Consensus 740 ~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 819 (1058)
+. +
T Consensus 164 -----------------------------------v~-----------------------~------------------- 166 (362)
T KOG0294|consen 164 -----------------------------------VL-----------------------N------------------- 166 (362)
T ss_pred -----------------------------------ee-----------------------c-------------------
Confidence 00 0
Q ss_pred ccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEeCCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEE
Q 001534 820 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 899 (1058)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~las 899 (1058)
+ ....+.+.|+|.|.+++.+..+.|-||.+.+......+... ..+.|+.|- ++..|++
T Consensus 167 -------------L------~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l--~~~~L~v 224 (362)
T KOG0294|consen 167 -------------L------KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP-KRILCATFL--DGSELLV 224 (362)
T ss_pred -------------c------CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc-ccceeeeec--CCceEEE
Confidence 0 11223478888888888888888999999887766655433 456777776 5778999
Q ss_pred EeCCCeEEEEEcccceeEEEEeCCCCCeEEEEE--cCCCCEEEEEeCCCcEEEEeCCCCcc
Q 001534 900 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAF--SPTLNALVSSGADAQLCMWSIDKWEK 958 (1058)
Q Consensus 900 g~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~--spd~~~l~s~s~D~~i~iwd~~~~~~ 958 (1058)
|.+|+.|.+||.++..+...+.+|.++|.++.+ .|++.+|+|+|.||.|+|||++...+
T Consensus 225 G~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 225 GGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred ecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccccc
Confidence 999999999999999999999999999999985 56789999999999999999987543
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-21 Score=208.78 Aligned_cols=246 Identities=14% Similarity=0.182 Sum_probs=212.9
Q ss_pred cCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCC-CceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEE
Q 001534 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1058)
Q Consensus 405 ~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd 483 (1058)
..|...-+.++|.|+|++|++++.||.|++|+.... +... .+.-+...|.+++.. +. +|++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACY--SN--HFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeec--cc--ceEEeeccceEEEee
Confidence 358889999999999999999999999999998776 3333 333377778777764 44 699999999999999
Q ss_pred cCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001534 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1058)
Q Consensus 484 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1058)
..+++.-..+...+-++.+++++ .+|.+++.||.|-.|++-++........+.+|..+|.++.|+|++++|++.+.
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v~--g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~-- 158 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAVS--GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC-- 158 (933)
T ss_pred CCCCCccceeeeeeccceEEEEe--cCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec--
Confidence 99887766666667889999998 56789999999999999999999999999999999999999999999999875
Q ss_pred CCCceEEEeeCCCCceeEeecCCC-------CCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcc
Q 001534 564 EGESHLVEWNESEGAIKRTYSGFR-------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1058)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1058)
+|.|++||+.++.+...+.+-. ...+..++|+|++..++..+.|+.|++|+..+.+....+........+.
T Consensus 159 --dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 159 --DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS 236 (933)
T ss_pred --CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence 8889999999988777665432 2246679999999999999999999999999999999997766655689
Q ss_pred eEEEeCCCCEEEEEECCCcEEEEECCC
Q 001534 637 RLRFNKEGSLLAVTTSDNGIKILANSD 663 (1058)
Q Consensus 637 ~~~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1058)
++.|+|.|+|||+++.+|.|.|||.++
T Consensus 237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 999999999999999999999999986
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-23 Score=194.96 Aligned_cols=301 Identities=16% Similarity=0.216 Sum_probs=228.7
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC-CCCE
Q 001534 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLM 422 (1058)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-d~~~ 422 (1058)
.|.+.|+++.+.|...+++++|+.||.|.|||++.........+- -+ ..+. .....-.+|+-.|.++.|-| |.-.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li-~k-~~c~--v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI-AK-HKCI--VAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccce-eh-eeee--ccccCCccceeeeeeeEEeeecCce
Confidence 388999999999976668999999999999999865422110000 00 0000 01112467999999999999 6778
Q ss_pred EEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCC-ceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeE
Q 001534 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK-QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1058)
Q Consensus 423 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~-~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~ 501 (1058)
+.+++.|.+++|||..+-+... .+ ...+.|.+-++||-.. ..++++|..|-.|++.|+.+|..-+++.||.+.|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 8899999999999999865443 33 2566788889988654 44788889999999999999999999999999999
Q ss_pred EEEecccCCccEEEEEeCCCeEEEEeCCCC-CceEEe--------------cCCCCcEEEEEEcCCCCEEEEEecCCCCC
Q 001534 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDY--------------DAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1058)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~-~~~~~~--------------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1058)
++.|+|..+ -.|++|+.||.|++||++.. ++...+ ..|.+.+..++|+.++.++++++. +
T Consensus 193 aV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d 267 (397)
T KOG4283|consen 193 AVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----D 267 (397)
T ss_pred EEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC----c
Confidence 999999765 68999999999999999865 333322 335568999999999999999985 7
Q ss_pred ceEEEeeCCCCceeEeecC---CCC---CceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEE
Q 001534 567 SHLVEWNESEGAIKRTYSG---FRK---RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1058)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~---~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1058)
..+++|+..+|+-...-.+ +.. ..+. +. +.+...++.--.++.+.++++-++..+..+..|. ..+.|.++
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~--k~i~c~~~ 343 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL--KRINCAAY 343 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeeccc--ceeeEEee
Confidence 7799999988753221111 111 0111 22 3334445555566899999999999999999884 47899999
Q ss_pred eCCCCEEEEEECCCcEEEEEC
Q 001534 641 NKEGSLLAVTTSDNGIKILAN 661 (1058)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~ 661 (1058)
.|+-+...++..|+.|..|-.
T Consensus 344 ~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 344 RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCchhhhhccccCCccccccc
Confidence 999999999999999999976
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-23 Score=197.27 Aligned_cols=294 Identities=12% Similarity=0.159 Sum_probs=223.2
Q ss_pred cccceeEeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEE
Q 001534 335 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1058)
Q Consensus 335 ~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 414 (1058)
.|.+...++++.. -.|+.||+.|. +||+|+.||.|.|||+.|...-. ++.+|-.+|+++
T Consensus 13 ~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~sl 71 (405)
T KOG1273|consen 13 YPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITSL 71 (405)
T ss_pred ChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchhh-------------------hhhccccceeEE
Confidence 3555667777666 89999999997 89999999999999999865332 378999999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEee
Q 001534 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1058)
Q Consensus 415 ~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~ 494 (1058)
+||+||+.|+++|.|..|.+||+..|..+..+. ..++|+.+.|.|...+ .++.+-.+..-.+-++..++.. .+.
T Consensus 72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir----f~spv~~~q~hp~k~n-~~va~~~~~sp~vi~~s~~~h~-~Lp 145 (405)
T KOG1273|consen 72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR----FDSPVWGAQWHPRKRN-KCVATIMEESPVVIDFSDPKHS-VLP 145 (405)
T ss_pred EecCCCCEeeeecCCceeEEEeccCCCceeEEE----ccCccceeeeccccCC-eEEEEEecCCcEEEEecCCcee-ecc
Confidence 999999999999999999999999998776432 5789999999998776 3444444545556665543221 111
Q ss_pred C-CCCCeE----EEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCC-CcEEEEEEcCCCCEEEEEecCCCCCce
Q 001534 495 G-HEAPVY----SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESH 568 (1058)
Q Consensus 495 ~-~~~~v~----~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1058)
. ..+..+ +..|. ..|+++++|...|.+.++|.++.+.+..+.... ..|..+.++..|+.++..+. |..
T Consensus 146 ~d~d~dln~sas~~~fd--r~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRv 219 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFD--RRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRV 219 (405)
T ss_pred CCCcccccccccccccc--CCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----Cce
Confidence 1 111111 11233 567999999999999999999998887776655 78999999999999999874 888
Q ss_pred EEEeeCCC-------Cce--eEeecCC-CCCceeEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEecCCCCCCcce
Q 001534 569 LVEWNESE-------GAI--KRTYSGF-RKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1058)
Q Consensus 569 i~~wd~~~-------~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1058)
|+.|+++. +++ .+.+..- ....-.+++|+.+|.++++++ .-..++||....|.+++.+.+..+. ....
T Consensus 220 IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~D 298 (405)
T KOG1273|consen 220 IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLD 298 (405)
T ss_pred EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heee
Confidence 99999762 111 1111110 111346789999999998876 5567999999999999999877643 5678
Q ss_pred EEEeCCCCEEEEEECCCcEEEEECCC
Q 001534 638 LRFNKEGSLLAVTTSDNGIKILANSD 663 (1058)
Q Consensus 638 ~~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1058)
+.|+|-...+++- ..|.+++|....
T Consensus 299 V~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 299 VNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cccccceeeeeec-cCCceEEEEeec
Confidence 8999988888877 778999998754
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=220.24 Aligned_cols=239 Identities=16% Similarity=0.254 Sum_probs=201.8
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEE-EEEecCCCceEEEEEcCCCcEEEE
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVND-IAFAHPNKQLCIVTCGDDKMIKVW 482 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~-~~fs~d~~~~~l~s~~~d~~v~vw 482 (1058)
+.+|+..|..+++.+.. .++++|.||++++|+-..++.+. ...+.+|.+.|.. +++-+..+. .+++|+.|+++.+|
T Consensus 10 l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~-~~~~~~~~g~i~~~i~y~e~~~~-~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLE-THAFEGPKGFIANSICYAESDKG-RLVVGGMDTTIIVF 86 (745)
T ss_pred eccCccchheeEecCCe-EEeecCCCCceeeeeccCccccc-ceecccCcceeeccceeccccCc-ceEeecccceEEEE
Confidence 78999999999876554 88999999999999987755443 3356778887777 888763333 69999999999999
Q ss_pred EcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecC
Q 001534 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1058)
Q Consensus 483 d~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1058)
......++..|.+|+..|.++.... + ..+++||.|.++++|. .++....+.+|...|.+++.-|++ .+++|+.
T Consensus 87 ~~~~~~P~~~LkgH~snVC~ls~~~--~-~~~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsa- 159 (745)
T KOG0301|consen 87 KLSQAEPLYTLKGHKSNVCSLSIGE--D-GTLISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPEN-TYVTGSA- 159 (745)
T ss_pred ecCCCCchhhhhccccceeeeecCC--c-CceEecccccceEEec--chhhhcccCCcchheeeeeecCCC-cEEeccC-
Confidence 9999999999999999999998653 3 3499999999999994 456666799999999999999988 6667764
Q ss_pred CCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeC
Q 001534 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1058)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1058)
|..|++|.- ++.+++|.+|.+ .|+.+++-+++ .+++++.||.|+.|++ +|+.+..+.+|.. .+++++..+
T Consensus 160 ---DKtIklWk~--~~~l~tf~gHtD-~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn--~vYsis~~~ 229 (745)
T KOG0301|consen 160 ---DKTIKLWKG--GTLLKTFSGHTD-CVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTN--FVYSISMAL 229 (745)
T ss_pred ---cceeeeccC--Cchhhhhccchh-heeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccce--EEEEEEecC
Confidence 888999975 889999999988 89999998764 6899999999999999 6777777766544 789999888
Q ss_pred CCCEEEEEECCCcEEEEECC
Q 001534 643 EGSLLAVTTSDNGIKILANS 662 (1058)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~ 662 (1058)
++..+++++.|++++||+..
T Consensus 230 ~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 230 SDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred CCCeEEEecCCceEEEeecC
Confidence 88999999999999999875
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-22 Score=179.83 Aligned_cols=241 Identities=13% Similarity=0.152 Sum_probs=191.3
Q ss_pred cCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEc
Q 001534 770 IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1058)
Q Consensus 770 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s 849 (1058)
.|.+.|.|.+|||+|+.+++++.|.+|++..++.. +.......++...| .+.|..++|-
T Consensus 87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~d--------------------t~~~~g~dle~nmh-dgtirdl~fl 145 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNAD--------------------TCNATGHDLEFNMH-DGTIRDLAFL 145 (350)
T ss_pred ccCccEEEEEecCccCeEEecCCCceEEEEecccc--------------------cccccCcceeeeec-CCceeeeEEe
Confidence 48899999999999999999999999998755432 22211122222337 8999999996
Q ss_pred cC----CcEEEEEe--CCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeC-
Q 001534 850 KN----DSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG- 922 (1058)
Q Consensus 850 ~d----~~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~- 922 (1058)
.| +..|++++ |-.|++-|..+|+.+..+.+|.+.|.++- +- ++-++|+|+.|.+|++||+.-..++.++..
T Consensus 146 d~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-sw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~ 223 (350)
T KOG0641|consen 146 DDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDND 223 (350)
T ss_pred cCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-Ee-cCcEEEccCCCceEEEEeeeccceeeeccCc
Confidence 53 56788877 66788889999999999999999998873 33 678999999999999999998777776632
Q ss_pred -C-----CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEE-eCC
Q 001534 923 -H-----QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HES 995 (1058)
Q Consensus 923 -h-----~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~-~d~ 995 (1058)
| +..|.+++..|.|++|++|-.|....+||+..+++ ++.+..|. ..|.++.|||...|++++ -|.
T Consensus 224 ~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~-----iq~f~phs---adir~vrfsp~a~yllt~syd~ 295 (350)
T KOG0641|consen 224 FHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM-----IQRFHPHS---ADIRCVRFSPGAHYLLTCSYDM 295 (350)
T ss_pred ccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce-----eeeeCCCc---cceeEEEeCCCceEEEEecccc
Confidence 2 35799999999999999999999999999999774 34444444 679999999999999997 899
Q ss_pred eEEEEeCCCCeeeEEee-------ccccceEEccCCcEEEEEECCCeEEEEcC
Q 001534 996 QISVYDSKLECSRSVSF-------LSLCPYVFGVSSIFLLSTLTKLSVAVHDP 1041 (1058)
Q Consensus 996 ~i~vwd~~~~~~~~~~~-------~~~~~~~~s~~~~~l~~~~~d~~v~vw~~ 1041 (1058)
.|++-|+.++...++.. -..-...|.+..-.+++.+.|+++.+|-+
T Consensus 296 ~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 296 KIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred eEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 99999994443322221 12556788999999999999999999975
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-21 Score=208.45 Aligned_cols=507 Identities=13% Similarity=0.132 Sum_probs=316.2
Q ss_pred eEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCC---EEEEE
Q 001534 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL---MLGVA 426 (1058)
Q Consensus 350 ~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~---~l~~~ 426 (1058)
....||+|+++++.+ .+..|.||...+|+++.. +.+|..++..+.+.|... ++.++
T Consensus 20 ~~avfSnD~k~l~~~--~~~~V~VyS~~Tg~~i~~-------------------l~~~~a~l~s~~~~~~~~~~~~~~~~ 78 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLC--TGNFVKVYSTATGECITS-------------------LEDHTAPLTSVIVLPSSENANYLIVC 78 (792)
T ss_pred cccccccCCcEEEEe--eCCEEEEEecchHhhhhh-------------------cccccCccceeeecCCCccceEEEEE
Confidence 345799999965543 478999999999998763 788999999999998544 67789
Q ss_pred eCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEec----CCCceEEEEEcCCC------------cEEEEEcCCC--c
Q 001534 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH----PNKQLCIVTCGDDK------------MIKVWDVVAG--R 488 (1058)
Q Consensus 427 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~----d~~~~~l~s~~~d~------------~v~vwd~~~~--~ 488 (1058)
+.||.|++||...+..++ ++.. ..++..+.+.| ... .+..+..|. +++-+.+.+- .
T Consensus 79 sl~G~I~vwd~~~~~Llk---t~~~-~~~v~~~~~~~~~a~~s~--~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~ 152 (792)
T KOG1963|consen 79 SLDGTIRVWDWSDGELLK---TFDN-NLPVHALVYKPAQADISA--NVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSA 152 (792)
T ss_pred ecCccEEEecCCCcEEEE---EEec-CCceeEEEechhHhCccc--eeEeecccceeeeecccccccceeeeEeeecccc
Confidence 999999999999987665 3332 22344443322 111 111111111 1111111110 0
Q ss_pred eeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEE----ecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001534 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD----YDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1058)
Q Consensus 489 ~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1058)
....+..|.. -.++.+++.+ .+.....+..+.+|+......... -..|.-.+++.++||++++++++..
T Consensus 153 ~~d~~~~~~~-~~~I~~~~~g---e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~--- 225 (792)
T KOG1963|consen 153 KGDFLKEHQE-PKSIVDNNSG---EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDS--- 225 (792)
T ss_pred chhhhhhhcC-CccEEEcCCc---eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEecc---
Confidence 0011112222 3445555433 344444566788888877552111 1223445799999999999999864
Q ss_pred CCceEEEeeCCC----CceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEE
Q 001534 565 GESHLVEWNESE----GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1058)
Q Consensus 565 ~~~~i~~wd~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1058)
+|+|.+|.--. ......+.-|+. .|.+++|+++|.+|++||..|.+.+|.+.+++ .+-++.-+ .+|..+.+
T Consensus 226 -dGrI~vw~d~~~~~~~~t~t~lHWH~~-~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLg--s~I~~i~v 300 (792)
T KOG1963|consen 226 -DGRILVWRDFGSSDDSETCTLLHWHHD-EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLG--SPILHIVV 300 (792)
T ss_pred -CCcEEEEeccccccccccceEEEeccc-ccceeEEecCCceEeecccceEEEEEeecCCC-cccccccC--CeeEEEEE
Confidence 78899996432 123455667777 89999999999999999999999999999988 33333333 37999999
Q ss_pred eCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCc
Q 001534 641 NKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720 (1058)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1058)
+||+.+.+....|+.|.+....+. ....++.+..... ++
T Consensus 301 S~ds~~~sl~~~DNqI~li~~~dl-~~k~tIsgi~~~~-------------------------------~~--------- 339 (792)
T KOG1963|consen 301 SPDSDLYSLVLEDNQIHLIKASDL-EIKSTISGIKPPT-------------------------------PS--------- 339 (792)
T ss_pred cCCCCeEEEEecCceEEEEeccch-hhhhhccCccCCC-------------------------------cc---------
Confidence 999999999999999999887655 2223332211100 00
Q ss_pred cccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEE
Q 001534 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWK 800 (1058)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~ 800 (1058)
.. ....+-.+.+++.|.-+.++..+..|.+.+||
T Consensus 340 ------------------------------------~k----------~~~~~l~t~~~idpr~~~~vln~~~g~vQ~yd 373 (792)
T KOG1963|consen 340 ------------------------------------TK----------TRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYD 373 (792)
T ss_pred ------------------------------------cc----------ccccccceeEEEcCCCCceeecCCCceEEEEe
Confidence 00 01223345677777666677788888898888
Q ss_pred cccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe---------CCe--EEEEECC
Q 001534 801 WQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS---------GGK--VSLFNMM 869 (1058)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s---------dg~--i~iwd~~ 869 (1058)
+.+.....+-. +...+...|.. .+ .-.+++++.+.+|.++++.. ||. ++.|-..
T Consensus 374 l~td~~i~~~~------v~~~n~~~~~~--------n~-~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 374 LYTDSTIYKLQ------VCDENYSDGDV--------NI-QVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ccccceeeeEE------EEeecccCCcc--------ee-EEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 76532211000 11111122221 13 55688899999999999873 233 7888765
Q ss_pred Cc----eEEEEe-cCCCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEEcccc----------eeEEEEeCCCCCeEEEEEc
Q 001534 870 TF----KVMTMF-MSPPPAATFLAFHPQDNN-IIAIGMEDSSVQIYNVRVD----------EVKTKLKGHQNRITGLAFS 933 (1058)
Q Consensus 870 ~~----~~~~~~-~~~~~~i~~l~~s~~~~~-~lasg~~dg~I~iwd~~~~----------~~~~~l~~h~~~v~~l~~s 933 (1058)
.. .+.... ..|...+.+.+|.+.... .+++++.||.++||-+.+. .|...-.-|..++++++||
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs 518 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS 518 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence 43 333333 346666555555442333 7899999999999988322 2322222488999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC-CccccceeeecCCCCCCCCCCeeEEEEcC---CCcEEEEEeCCeEEEEeC-CCCe
Q 001534 934 PTLNALVSSGADAQLCMWSIDK-WEKLKSRFIQAPAGRQSPLVGETKVQFHN---DQTHLLVVHESQISVYDS-KLEC 1006 (1058)
Q Consensus 934 pd~~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~fs~---d~~~l~~~~d~~i~vwd~-~~~~ 1006 (1058)
.||..|+ ++.|++|.+||..+ .+........ + .++..+.|.. ....+..+..+.+.+|++ +...
T Consensus 519 ~dGslla-~s~~~~Itiwd~~~~~~l~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l 587 (792)
T KOG1963|consen 519 QDGSLLA-VSFDDTITIWDYDTKNELLCTEGSR---N-----WPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSL 587 (792)
T ss_pred CCCcEEE-EecCCEEEEecCCChhhhhcccccc---c-----cchHhHhhhcccccccceeeccCceEehHhhhhhhe
Confidence 9996555 67888999999988 3322111111 1 1233344433 222234457788999998 4433
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=205.51 Aligned_cols=306 Identities=15% Similarity=0.218 Sum_probs=228.5
Q ss_pred CceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCC
Q 001534 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1058)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1058)
...+.+||+++|....++++.....-.++..- .+.+++++. ....+.+|.+........... -.+++.+++-+|+|
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v--~Pg~v~al~s~n~G 93 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIV--LPGPVHALASSNLG 93 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcc--cccceeeeecCCCc
Confidence 45599999999999999887622121222111 235677765 455789999876555442211 12368999999999
Q ss_pred CEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccc
Q 001534 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 724 (1058)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1058)
.+|+.|+..|.|++|.+.+| .++..+.+
T Consensus 94 ~~l~ag~i~g~lYlWelssG-~LL~v~~a--------------------------------------------------- 121 (476)
T KOG0646|consen 94 YFLLAGTISGNLYLWELSSG-ILLNVLSA--------------------------------------------------- 121 (476)
T ss_pred eEEEeecccCcEEEEEeccc-cHHHHHHh---------------------------------------------------
Confidence 99999999999999999998 44433322
Q ss_pred cCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccC
Q 001534 725 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT 804 (1058)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~ 804 (1058)
|-..|+++.|+.||..|++++.||.|.+|.+..-
T Consensus 122 ----------------------------------------------HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 122 ----------------------------------------------HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ----------------------------------------------hccceeEEEEeCCCcEEEecCCCccEEEEEEEee
Confidence 6778999999999999999999999999987532
Q ss_pred CCCCCCcccccccccccCCCCC---CccccccCCCCCCCCCeeEEEEccC--CcEEEEEe-CCeEEEEECCCceEEEEec
Q 001534 805 ERNPSGKATANVAPQLWQPPSG---TLMTNDINESKPTEESAACIALSKN--DSYVMSAS-GGKVSLFNMMTFKVMTMFM 878 (1058)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~~i~~~~~s~d--~~~la~~s-dg~i~iwd~~~~~~~~~~~ 878 (1058)
.+.... ..+. .+.. | .-+|+.+...+- ..+|++++ |.++++||+..+.++.++.
T Consensus 156 ----------------v~a~~~~~~~p~~-~f~~--H-tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~ 215 (476)
T KOG0646|consen 156 ----------------VSADNDHSVKPLH-IFSD--H-TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT 215 (476)
T ss_pred ----------------cccccCCCcccee-eecc--C-cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe
Confidence 111111 1111 1333 7 899999988765 45888988 9999999999999988876
Q ss_pred CCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccc----------------eeEEEEeCCCC--CeEEEEEcCCCCEEE
Q 001534 879 SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD----------------EVKTKLKGHQN--RITGLAFSPTLNALV 940 (1058)
Q Consensus 879 ~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~----------------~~~~~l~~h~~--~v~~l~~spd~~~l~ 940 (1058)
....+.+++.+| .++.+.+|+++|.|.+.++... ..+..+.||.+ +|+||+.+-||..|+
T Consensus 216 -fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 216 -FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred -cCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 567899999999 9999999999999998877532 23556789998 999999999999999
Q ss_pred EEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEE--eCCeEEEEeC
Q 001534 941 SSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDS 1002 (1058)
Q Consensus 941 s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~--~d~~i~vwd~ 1002 (1058)
+|+.||.|+|||+.+.+++++.. ... ++|+.+.+.|=-+-.+.+ ....+-.|+.
T Consensus 294 SGd~dg~VcvWdi~S~Q~iRtl~--~~k------gpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCIRTLQ--TSK------GPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred eeCCCCCEEEEecchHHHHHHHh--hhc------cccceeEeeccccceecccccCccCCchHh
Confidence 99999999999999988765422 112 568999997765444443 3344555655
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-23 Score=206.53 Aligned_cols=282 Identities=15% Similarity=0.193 Sum_probs=217.1
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceEEEEecCCCCCCcceEEEeCCCC-EEEEEECCCcEEEEECCCCce
Q 001534 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSDGVR 666 (1058)
Q Consensus 590 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~ 666 (1058)
.|+++.|+|....++++|.||.++||.+... ..++.+.... .+|.++.|.|+|. .+++++....++.||+.+.+.
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~--fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK--FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc--CccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 7999999999999999999999999988743 3455554443 4899999999999 899999999999999977621
Q ss_pred e-eecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccc
Q 001534 667 L-LRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVD 745 (1058)
Q Consensus 667 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1058)
. +....++
T Consensus 293 ~k~~~~~g~----------------------------------------------------------------------- 301 (514)
T KOG2055|consen 293 TKLKPPYGV----------------------------------------------------------------------- 301 (514)
T ss_pred ccccCCCCc-----------------------------------------------------------------------
Confidence 0 0000000
Q ss_pred cccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCC
Q 001534 746 KIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPS 825 (1058)
Q Consensus 746 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (1058)
....+....+||++++|+..+..|.|.+.. ..+
T Consensus 302 -------------------------e~~~~e~FeVShd~~fia~~G~~G~I~lLh----------------------akT 334 (514)
T KOG2055|consen 302 -------------------------EEKSMERFEVSHDSNFIAIAGNNGHIHLLH----------------------AKT 334 (514)
T ss_pred -------------------------ccchhheeEecCCCCeEEEcccCceEEeeh----------------------hhh
Confidence 123456678899999999999999988753 334
Q ss_pred CCccccccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEECCCceEEEEecCCCC-CeEEEEEeCCCCCEEEEEeCC
Q 001534 826 GTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPP-AATFLAFHPQDNNIIAIGMED 903 (1058)
Q Consensus 826 ~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~~lasg~~d 903 (1058)
++.+.. ++. .+.|..++|+.|++.|.+++ +|.|.+||+....+++.+....+ .-++++.|+ ++.++|+|++.
T Consensus 335 ~eli~s-~Ki----eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~ 408 (514)
T KOG2055|consen 335 KELITS-FKI----EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISL-NGSYLATGSDS 408 (514)
T ss_pred hhhhhe-eee----ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecC-CCceEEeccCc
Confidence 444332 443 78899999999999887766 99999999999999988874322 246788888 89999999999
Q ss_pred CeEEEEEcccc------eeEEEEeCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCccccceeeecCCCCCCCCC
Q 001534 904 SSVQIYNVRVD------EVKTKLKGHQNRITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 975 (1058)
Q Consensus 904 g~I~iwd~~~~------~~~~~l~~h~~~v~~l~~spd~~~l~s~s--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 975 (1058)
|-|-|||.++. +++..+..-...|++|.|+||+++||.+| .+..+++-.+.+-..- ..+.......+
T Consensus 409 GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVF-----sNfP~~n~~vg 483 (514)
T KOG2055|consen 409 GIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVF-----SNFPTSNTKVG 483 (514)
T ss_pred ceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeee-----ccCCCCCCccc
Confidence 99999997643 45666666677899999999999998877 4677999998873322 22221122235
Q ss_pred CeeEEEEcCCCcEEEEE-eCCeEEEEeC
Q 001534 976 GETKVQFHNDQTHLLVV-HESQISVYDS 1002 (1058)
Q Consensus 976 ~v~~~~fs~d~~~l~~~-~d~~i~vwd~ 1002 (1058)
.|+|++|||.|.++|.| .+|.+.+|.+
T Consensus 484 ~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 484 HVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ceEEEEecCCCceEEeecCCCceeeEee
Confidence 68999999999999999 8899999986
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-22 Score=192.15 Aligned_cols=242 Identities=15% Similarity=0.119 Sum_probs=189.2
Q ss_pred CCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCC
Q 001534 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1058)
Q Consensus 407 h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~ 486 (1058)
....|.++.|+|.+..|++++.||++++||+....... .+ .|..++.+++|.++.. +++|+-||.|+.+|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~---~~-~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL---KF-KHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh---he-ecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 46789999999999999999999999999999864433 22 4899999999998654 89999999999999988
Q ss_pred CceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCC
Q 001534 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1058)
Q Consensus 487 ~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1058)
+... .+..|..+|.++...+.. ..+++||.|++|++||.+.......+.... .|.++.. .|+.|++++. +
T Consensus 85 ~~~~-~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~----~ 154 (323)
T KOG1036|consen 85 GNED-QIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS----D 154 (323)
T ss_pred Ccce-eeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec----C
Confidence 8754 455699999999998654 689999999999999999755544444433 7777765 4667777653 7
Q ss_pred ceEEEeeCCCCceeEee-cCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceEEEEecCCC-------CCC
Q 001534 567 SHLVEWNESEGAIKRTY-SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGG-------LPA 634 (1058)
Q Consensus 567 ~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~~~ 634 (1058)
..+.+||+++....... ...-.-.++++++-|++.-+++++-||.|.+=.++.. +....++.|.. ..+
T Consensus 155 r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP 234 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP 234 (323)
T ss_pred ceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence 78999999976543321 1112226889999998888999999999988655544 33344444422 246
Q ss_pred cceEEEeCCCCEEEEEECCCcEEEEECCCCc
Q 001534 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1058)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 665 (1058)
|++++|+|-...+|+|+.||.|.+||..+.+
T Consensus 235 VNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 235 VNAIAFHPIHGTFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred eceeEeccccceEEecCCCceEEEccCcchh
Confidence 8999999999999999999999999998763
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-23 Score=205.45 Aligned_cols=288 Identities=12% Similarity=0.208 Sum_probs=234.1
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCC-EEE
Q 001534 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-MLG 424 (1058)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~-~l~ 424 (1058)
.++|++|.|+|..+ +|.+++.||+++||.+.......- +. +.--..+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~l---------------qS--~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKL---------------QS--IHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhh---------------ee--eeeccCccceeeecCCCceEEE
Confidence 57999999999998 788889999999999985432210 01 122456899999999999 899
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecCc-CCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEE
Q 001534 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1058)
Q Consensus 425 ~~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~ 503 (1058)
+++....++.||+.+.+... ...+.++. ..+.....||+++ +|+..+..|.|.+....+++.+.+++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 99999999999999876432 22344554 3577889999999 89999999999999999999999887 67789999
Q ss_pred EecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCC-cEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCC------
Q 001534 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE------ 576 (1058)
Q Consensus 504 ~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~------ 576 (1058)
+|+ .++..|++++.+|.|.+||++...+...+...++ .-++++.++++.++++|+ ..|.|.|||..+
T Consensus 351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS----~~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS----DSGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc----CcceEEEeccchhhccCC
Confidence 998 5668999999999999999999988777765544 557889999999999997 488899999653
Q ss_pred CceeEeecCCCCCceeEEEEcCCCCEEEEEe--CCCeEEEEECCCCceEEEEecC-CCCCCcceEEEeCCCCEEEEEECC
Q 001534 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTSD 653 (1058)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d 653 (1058)
.+++..+..-.. .|++++|+++.+.|+.++ .+..+++-.+.+......++.. ...+.|+|++|+|.+.++|.|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 345555555554 799999999999988877 5778999999887776666543 334578999999999999999999
Q ss_pred CcEEEEECC
Q 001534 654 NGIKILANS 662 (1058)
Q Consensus 654 g~i~iw~~~ 662 (1058)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999864
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=202.99 Aligned_cols=294 Identities=16% Similarity=0.223 Sum_probs=224.2
Q ss_pred CCCCeeEEEEecCCC-eEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC-CCCE
Q 001534 345 QGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLM 422 (1058)
Q Consensus 345 h~~~V~~~~fspdg~-~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-d~~~ 422 (1058)
+.+.|++++|+|... .++|+|+..|.|-+||+.+.+...... ..+..|+++|.++.|+| +...
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEecCCChhh
Confidence 778999999999876 799999999999999997544433211 23678999999999999 5568
Q ss_pred EEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCce-eEEeeCCCCCeE
Q 001534 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVY 501 (1058)
Q Consensus 423 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~-~~~l~~~~~~v~ 501 (1058)
+.+.|.||+|+.-|++++.. .....+..-...+.++.|+.+.. .++.+..=|...+||.+++.. ...+.-|...|+
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 89999999999999987532 22223333455688899998887 577777777999999998655 667778999999
Q ss_pred EEEecccCCccEEEEEeCCCeEEEEeCCCCCce----EEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCC--
Q 001534 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-- 575 (1058)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-- 575 (1058)
+++++|-.+ .+++++|.|++.++||++..... .....|...|.+..|||.+-.|++.+. |..|++||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceEEeecccc
Confidence 999999765 79999999999999999874432 344567889999999999888888764 7889999973
Q ss_pred --CCceeEeecCCCC--C--ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcc-eEEEeCCCCEEE
Q 001534 576 --EGAIKRTYSGFRK--R--SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP-RLRFNKEGSLLA 648 (1058)
Q Consensus 576 --~~~~~~~~~~~~~--~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~ 648 (1058)
.-.+...+..... . ......|.|+.+++++|-.-..|-|+|-..++.+..+..+... .|. -..|+|-+..++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPMRDTLA 480 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccccccee
Confidence 2233333322111 0 2334679999999999998889999999999888887555432 333 357999887444
Q ss_pred E-EECCCcEEEEECC
Q 001534 649 V-TTSDNGIKILANS 662 (1058)
Q Consensus 649 ~-~~~dg~i~iw~~~ 662 (1058)
+ ++..|.|+||--.
T Consensus 481 aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 481 AGGNSSGKIYVFTNK 495 (498)
T ss_pred ccCCccceEEEEecC
Confidence 4 5567888888654
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.3e-23 Score=207.33 Aligned_cols=282 Identities=11% Similarity=0.178 Sum_probs=231.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCC---ceeEeecCC-CCCceeEEEEcCCCCEEEEEeCCCeEEE
Q 001534 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG---AIKRTYSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1058)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i 614 (1058)
.|+.-|.++++|...+++++|+ .+.|++||+... .++..+... .+..++++.+.|||+.|++||+-.++.|
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-----kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsi 491 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-----KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSI 491 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-----CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeee
Confidence 4677888999999999999996 788999998743 344455443 3447899999999999999999999999
Q ss_pred EECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCcccc
Q 001534 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 694 (1058)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1058)
||+....+............+.+++.+||.+..+++..||.|.|||+.+. .+++.+.+
T Consensus 492 WDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqG--------------------- 549 (705)
T KOG0639|consen 492 WDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQG--------------------- 549 (705)
T ss_pred eeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeecccC---------------------
Confidence 99987655444444333346788999999999999999999999999876 56665555
Q ss_pred ccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCc
Q 001534 695 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 774 (1058)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1058)
|.+.
T Consensus 550 ----------------------------------------------------------------------------htDG 553 (705)
T KOG0639|consen 550 ----------------------------------------------------------------------------HTDG 553 (705)
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 5566
Q ss_pred eEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcE
Q 001534 775 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 854 (1058)
Q Consensus 775 i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~ 854 (1058)
+.|+.+++||..|-+|+-|.+++.||++.... +.... . ...|.++.++|.+.+
T Consensus 554 ascIdis~dGtklWTGGlDntvRcWDlregrq---------------------lqqhd-----F-~SQIfSLg~cP~~dW 606 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ---------------------LQQHD-----F-SSQIFSLGYCPTGDW 606 (705)
T ss_pred ceeEEecCCCceeecCCCccceeehhhhhhhh---------------------hhhhh-----h-hhhheecccCCCccc
Confidence 78999999999999999999999998764211 11111 2 667999999999999
Q ss_pred EEEEe-CCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEEEEEc
Q 001534 855 VMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS 933 (1058)
Q Consensus 855 la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~s 933 (1058)
||+|- ++.+.|.... +.....+..|.+-|.++.|++ -|+++++.+.|..+-.|...-|.-+...+ ...+|.++.+|
T Consensus 607 lavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~-cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS 683 (705)
T KOG0639|consen 607 LAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDIS 683 (705)
T ss_pred eeeecccCcEEEEecC-CccceeecccccEEEEEEecc-cCceeeecCchhhhhhccCccccceeecc-ccCcceeeeec
Confidence 99997 7889888874 556667778999999999999 99999999999999999998887666655 56789999999
Q ss_pred CCCCEEEEEeCCCcEEEEeC
Q 001534 934 PTLNALVSSGADAQLCMWSI 953 (1058)
Q Consensus 934 pd~~~l~s~s~D~~i~iwd~ 953 (1058)
.|+++++|||.|....||.+
T Consensus 684 ~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 684 FDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCceEEEecCCCcceEEEEE
Confidence 99999999999988888865
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=190.43 Aligned_cols=251 Identities=17% Similarity=0.261 Sum_probs=201.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC--CCCE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--d~~~ 422 (1058)
|.+-|..+...--|+ .||+++.|++|+|+.++.+.... ....|.||.++|..++|.. -|.+
T Consensus 10 H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred hhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCcE
Confidence 788888888888898 58999999999999998765421 1112889999999999976 8999
Q ss_pred EEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCC-c--eeEEeeCCCCC
Q 001534 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-R--KQYTFEGHEAP 499 (1058)
Q Consensus 423 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~-~--~~~~l~~~~~~ 499 (1058)
||+++.||.|.||.-.++ ......+...|...|++++|.|.+-.+.|+.++.||.|.|.+.++. . ..+....|.-.
T Consensus 73 LAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred eeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 999999999999998887 4444556778999999999999988889999999999999987654 2 23345679999
Q ss_pred eEEEEecccCC-c-----------cEEEEEeCCCeEEEEeCCCCCce--EEecCCCCcEEEEEEcCCC----CEEEEEec
Q 001534 500 VYSVCPHHKES-I-----------QFIFSTAIDGKIKAWLYDYLGSR--VDYDAPGNWCTMMAYSADG----TRLFSCGT 561 (1058)
Q Consensus 500 v~~~~~~~~~~-~-----------~~l~s~s~d~~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~~~----~~l~~~~~ 561 (1058)
|++++|.|..- | ..|++|+.|+.|++|+.++..-. ..+..|...|+.++|.|.- .++++++
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S- 230 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS- 230 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec-
Confidence 99999987621 1 56999999999999999886332 3478899999999999964 4688887
Q ss_pred CCCCCceEEEeeCCCC--ceeE-eecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001534 562 SKEGESHLVEWNESEG--AIKR-TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1058)
Q Consensus 562 ~~~~~~~i~~wd~~~~--~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 618 (1058)
.|+++.||..+.. .-.. .+..... .+..++|+..|+.|+.++.|+.|.+|.-.
T Consensus 231 ---qDg~viIwt~~~e~e~wk~tll~~f~~-~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 231 ---QDGTVIIWTKDEEYEPWKKTLLEEFPD-VVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ---CCCcEEEEEecCccCcccccccccCCc-ceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 4888999976521 1111 1222223 78999999999999999999999999754
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-20 Score=204.81 Aligned_cols=292 Identities=13% Similarity=0.134 Sum_probs=215.8
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEE-EEEeCCCeEEEEeCCCCCceEEecCCCCcEEEE
Q 001534 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1058)
Q Consensus 469 ~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l-~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1058)
++++++.|+.|++||+.+++.+..+..+.. +.+++|+++ +..+ ++++.++.|++||..+++....+..+. .+..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~d--g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~ 78 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKD--GKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELF 78 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCC--CCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEE
Confidence 688999999999999999999988886654 677888864 4555 677789999999999877665555433 35678
Q ss_pred EEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCC-eEEEEECCCCceEEEE
Q 001534 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTV 626 (1058)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~ 626 (1058)
+|+|+++.+++++. .++.+++||+.+++.+..+.... .+..++|+|++..+++++.++ .+.+||..+++....+
T Consensus 79 ~~~~~g~~l~~~~~---~~~~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 79 ALHPNGKILYIANE---DDNLVTVIDIETRKVLAEIPVGV--EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred EECCCCCEEEEEcC---CCCeEEEEECCCCeEEeEeeCCC--CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 99999998876642 36789999999888777776432 357899999999999988765 5677899888776655
Q ss_pred ecCCCCCCcceEEEeCCCCEEEEEE-CCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccc
Q 001534 627 DADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 705 (1058)
Q Consensus 627 ~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1058)
.... ....++|+|+++++++++ .++.|++||+.++. ....+..+
T Consensus 154 ~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-~~~~~~~~------------------------------- 198 (300)
T TIGR03866 154 LVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATRK-VIKKITFE------------------------------- 198 (300)
T ss_pred EcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcce-eeeeeeec-------------------------------
Confidence 4322 357799999999886554 58999999997662 11111000
Q ss_pred cCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCc
Q 001534 706 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGL 785 (1058)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~ 785 (1058)
..+.
T Consensus 199 ----------------------------------------------------------------------------~~~~ 202 (300)
T TIGR03866 199 ----------------------------------------------------------------------------IPGV 202 (300)
T ss_pred ----------------------------------------------------------------------------cccc
Confidence 0000
Q ss_pred eEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEE--eCCeE
Q 001534 786 SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA--SGGKV 863 (1058)
Q Consensus 786 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~--sdg~i 863 (1058)
... ......++|+||+++++++ +++.+
T Consensus 203 -----------------------------------------------~~~----~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 203 -----------------------------------------------HPE----AVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred -----------------------------------------------ccc----cCCccceEECCCCCEEEEEcCCCCeE
Confidence 000 1112357788999876554 36789
Q ss_pred EEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEE-eCCCeEEEEEcccceeEEEEeCCCCCeEEEEEcC
Q 001534 864 SLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG-MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 934 (1058)
Q Consensus 864 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg-~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~sp 934 (1058)
.+||..+++....+. +...+.+++|+| ++++|+++ ..+|.|.+||+.+++++..++.. .....++++|
T Consensus 232 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 232 AVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 999999888776553 445789999999 88888876 56899999999999999998855 5568888876
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-22 Score=206.18 Aligned_cols=272 Identities=13% Similarity=0.144 Sum_probs=204.9
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEe
Q 001534 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1058)
Q Consensus 348 ~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~ 427 (1058)
.|..++|-|||..+++.+ +..+.|||...|..++. +++|++.|+|++|+.||+.+|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 799999999998776654 67899999999998875 899999999999999999999999
Q ss_pred CCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecc
Q 001534 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1058)
Q Consensus 428 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~ 507 (1058)
.|..|.+|+-+-...++ ..|...|.||.|+|-.. .|++++-. ..-+|..+.....+ .+ ....+.+++|.
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K-~k-ss~R~~~CsWt- 141 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSK-HK-SSSRIICCSWT- 141 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHh-hh-hheeEEEeeec-
Confidence 99999999976543332 25999999999999988 68888744 56788865433221 11 23456666666
Q ss_pred cCCccEEEEEeCCCeEEEEeCCCCCceEEecC---CCCcEEEEEEcCCCC-----EEEEEecCCCCCceEEEeeCCCCce
Q 001534 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PGNWCTMMAYSADGT-----RLFSCGTSKEGESHLVEWNESEGAI 579 (1058)
Q Consensus 508 ~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~~~-----~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1058)
.||++++.|-.+|+|.+-+- ++++...+.. ...+|.+++|+|... .+++.. -..++..+.+. |+.
T Consensus 142 -nDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D----W~qTLSFy~Ls-G~~ 214 (1081)
T KOG1538|consen 142 -NDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD----WGQTLSFYQLS-GKQ 214 (1081)
T ss_pred -CCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe----ccceeEEEEec-cee
Confidence 78899999999999998753 3444444443 556999999999643 333332 23445555543 444
Q ss_pred eEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEE
Q 001534 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1058)
Q Consensus 580 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 659 (1058)
+..-+.-.- ...|+++.++|.+++.||.|+.+.+|-- .|-.+.++....+ .|..++..|++++++.|+.||+|-.|
T Consensus 215 Igk~r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~--WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 215 IGKDRALNF-DPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDS--WIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred ecccccCCC-CchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccce--eEEEEEEccCCceEEEEEccCeeehh
Confidence 332222221 3568899999999999999999999964 4666666655433 79999999999999999999999999
Q ss_pred ECC
Q 001534 660 ANS 662 (1058)
Q Consensus 660 ~~~ 662 (1058)
++.
T Consensus 291 Nl~ 293 (1081)
T KOG1538|consen 291 NLI 293 (1081)
T ss_pred hhH
Confidence 874
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=202.50 Aligned_cols=253 Identities=13% Similarity=0.155 Sum_probs=208.7
Q ss_pred eEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 001534 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1058)
Q Consensus 360 ~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~ 439 (1058)
+++++-.....+.+|.+........+ ---.++|.|++-+|+|.+|+.|+-.|.|++|.+.+
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~-------------------~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss 112 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQY-------------------IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSS 112 (476)
T ss_pred heeeecccCccccccccCchhhhhhh-------------------cccccceeeeecCCCceEEEeecccCcEEEEEecc
Confidence 34444445568888988765544321 11456899999999999999999999999999999
Q ss_pred CCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcC---------CCceeEEeeCCCCCeEEEEecccCC
Q 001534 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV---------AGRKQYTFEGHEAPVYSVCPHHKES 510 (1058)
Q Consensus 440 ~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~---------~~~~~~~l~~~~~~v~~~~~~~~~~ 510 (1058)
|..+. .+.+|-..|+|+.|+.||. +|+|||.||.|.+|++. +-++++.|..|.-+|+.+...+.+.
T Consensus 113 G~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~ 187 (476)
T KOG0646|consen 113 GILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGT 187 (476)
T ss_pred ccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCc
Confidence 98877 6678999999999999999 89999999999999763 3467889999999999999887766
Q ss_pred ccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCC--------------
Q 001534 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-------------- 576 (1058)
Q Consensus 511 ~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-------------- 576 (1058)
..+++++|.|.++++||+..+..+..+.. ...+.+++.+|-++.+++|+. +|.|.+.++..
T Consensus 188 ~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~----~G~I~~~~~~~~~~~~~~v~~k~~~ 262 (476)
T KOG0646|consen 188 NARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTE----EGKIFQNLLFKLSGQSAGVNQKGRH 262 (476)
T ss_pred cceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCC----cceEEeeehhcCCcccccccccccc
Confidence 68999999999999999998877666554 457899999999999999974 78888877642
Q ss_pred --CceeEeecCCCC-CceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCC
Q 001534 577 --GAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1058)
Q Consensus 577 --~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1058)
+..+..+.+|.+ ..|+|++++-||..|++|+.||.|+|||+.+.++++++... .++|+.+.+.|-
T Consensus 263 ~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 263 EENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred cccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh--ccccceeEeecc
Confidence 234556777766 47999999999999999999999999999999998888642 347888888764
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=203.89 Aligned_cols=252 Identities=17% Similarity=0.271 Sum_probs=203.6
Q ss_pred cCCCcCeEEEEECCCCC-EEEEEeCCCeEEEEEecCCCce-------eeeeeeecCcCCeEEEEEecCCCceEEEEEcCC
Q 001534 405 NDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGEL-------RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1058)
Q Consensus 405 ~~h~~~v~~~~~spd~~-~l~~~~~d~~i~vwd~~~~~~~-------~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d 476 (1058)
-.|.+.|+.+..-|... .+|+++..+.|.|||..+.... +.-..+.+|.+.-.+++|++.... .+++++.|
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccCC
Confidence 45999999999999655 6677788899999998764322 223378899998889999998776 89999999
Q ss_pred CcEEEEEcCCCc-------eeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCC--CCCceEEecCCCCcEEEE
Q 001534 477 KMIKVWDVVAGR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSRVDYDAPGNWCTMM 547 (1058)
Q Consensus 477 ~~v~vwd~~~~~-------~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~--~~~~~~~~~~~~~~v~~~ 547 (1058)
++|++||+.... +...+.+|...|..++|++... ..|++++.|+.+.+||++ +.+.......|...+.++
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 999999997532 3457889999999999999754 799999999999999999 455566788899999999
Q ss_pred EEcCCCCEEE-EEecCCCCCceEEEeeCCCC-ceeEeecCCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceE-
Q 001534 548 AYSADGTRLF-SCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNML- 623 (1058)
Q Consensus 548 ~~s~~~~~l~-~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~- 623 (1058)
+|+|-+.+++ +++ .|++|.+||+++- +++.++.+|.. .|..+.|+|.. ..|++++.|+.+.+||+..-...
T Consensus 279 ~fnp~~~~ilAT~S----~D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 279 AFNPFNEFILATGS----ADKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred EeCCCCCceEEecc----CCCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 9999666555 554 4888999999974 57888999988 89999999976 46777889999999998753222
Q ss_pred -----------EEEecCCCCCCcceEEEeCCCC-EEEEEECCCcEEEEECCC
Q 001534 624 -----------TTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSD 663 (1058)
Q Consensus 624 -----------~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~ 663 (1058)
..+...+|...|..+.|+|... .|++++.|+.+.||....
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 1244445666899999999655 578889999999998764
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-22 Score=190.63 Aligned_cols=253 Identities=13% Similarity=0.227 Sum_probs=195.6
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCcee
Q 001534 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1058)
Q Consensus 411 v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~ 490 (1058)
..|+.||+.|.+||+|+.||.|.|||+.+...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999966444 7789999999999999999 8999999999999999999999
Q ss_pred EEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCC----cEEEEEEcCCCCEEEEEecCCCCC
Q 001534 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN----WCTMMAYSADGTRLFSCGTSKEGE 566 (1058)
Q Consensus 491 ~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1058)
+.+. ..++|+.+.|+|......+++--.. .-.+-++..+.....-....+ ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~-sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEE-SPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecC-CcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9887 7889999999998775555554433 344455554222221111111 2223468899999999974 8
Q ss_pred ceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCC-------ceE--EEEecCCCCCCcce
Q 001534 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-------NML--TTVDADGGLPASPR 637 (1058)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v~~ 637 (1058)
|.+.++|..+-+++..++-.....|..+.++..|++|+..+.|+.||.|++..- ++. +.+..--....-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 889999999999999888766447899999999999999999999999997631 111 11111111123467
Q ss_pred EEEeCCCCEEEEEEC-CCcEEEEECCCCceeeecccCCc
Q 001534 638 LRFNKEGSLLAVTTS-DNGIKILANSDGVRLLRMLEGRA 675 (1058)
Q Consensus 638 ~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~ 675 (1058)
+.|+.+|.|++.++. ...++||.-..| .+++.+.|..
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~k 292 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTK 292 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCc
Confidence 899999999988875 567999999888 7777776654
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-24 Score=224.82 Aligned_cols=236 Identities=17% Similarity=0.322 Sum_probs=213.5
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEE
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd 483 (1058)
+..|...|.++..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 34588899999987788999999999999999987765554 6789999999999999988 899999999999999
Q ss_pred cCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001534 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1058)
Q Consensus 484 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1058)
+++++.+++|.+|...+.++.|+|.. .+.++|+.|..+++||.+..++...+.+|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 99999999999999999999999654 78999999999999999999999999999999999999999999999873
Q ss_pred CCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCC
Q 001534 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1058)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1058)
|..+++||+..|+....|..|.. .+..+.|+|..-.+..|+.|+++++||+++.+.+...... ...|.+.+|+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPD 249 (825)
T ss_pred --cceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCC
Confidence 78899999999999999999988 8999999999888888999999999999988888776554 447999999999
Q ss_pred CCEEEEEECC
Q 001534 644 GSLLAVTTSD 653 (1058)
Q Consensus 644 ~~~l~~~~~d 653 (1058)
+..+++|...
T Consensus 250 ~~~~~~G~q~ 259 (825)
T KOG0267|consen 250 GKIVLSGEQI 259 (825)
T ss_pred ceeeecCchh
Confidence 9999888655
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-20 Score=204.94 Aligned_cols=276 Identities=9% Similarity=0.060 Sum_probs=203.9
Q ss_pred EEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEE-EEEeCCCeEEEEEecC
Q 001534 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYNP 439 (1058)
Q Consensus 361 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l-~~~~~d~~i~vwd~~~ 439 (1058)
++++++.|+.|++||+.+++.+.. +..+ ..+.+++|+|+|+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 788889999999999998875542 2333 346789999999977 5667889999999998
Q ss_pred CCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeC
Q 001534 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI 519 (1058)
Q Consensus 440 ~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~ 519 (1058)
++... .+..+. .+..++|+|+++. ++++++.|+.+++||+.+++.+..+.. ...+.+++|+| ++.++++++.
T Consensus 63 ~~~~~---~~~~~~-~~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~--dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGP-DPELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP--DGKIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCC-CccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC--CCCEEEEEec
Confidence 76544 333333 3567899999984 445566789999999999888877763 33467888885 5578888887
Q ss_pred CC-eEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCC------Ccee
Q 001534 520 DG-KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK------RSLG 592 (1058)
Q Consensus 520 d~-~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~ 592 (1058)
++ .+..||..+......... ......++|+|+++++++++. .++.|++||+.+++.+..+..+.. ....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 567789877655443332 334578999999999876542 367899999999887776543211 0234
Q ss_pred EEEEcCCCCEEEE-EeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEE-ECCCcEEEEECCCCceeeec
Q 001534 593 VVQFDTTRNRFLA-AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSDGVRLLRM 670 (1058)
Q Consensus 593 ~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~ 670 (1058)
.++|+|+++++++ .+.++.+.+||+.+++....+... + .+.+++|+|+|++|+++ +.+|.|.+||+.++ +....
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~--~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~ 286 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG-Q--RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKS 286 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC-C--CcceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 5889999998655 456678999999998877665432 2 57899999999999886 46899999999988 44444
Q ss_pred cc
Q 001534 671 LE 672 (1058)
Q Consensus 671 ~~ 672 (1058)
++
T Consensus 287 ~~ 288 (300)
T TIGR03866 287 IK 288 (300)
T ss_pred EE
Confidence 43
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=203.24 Aligned_cols=318 Identities=16% Similarity=0.235 Sum_probs=231.2
Q ss_pred eeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEE
Q 001534 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (1058)
Q Consensus 447 ~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~w 526 (1058)
..+.+|++.|.++...|.|. +|++|+.||+|+||.+.+|++++++. ..+.|.|++|+|.++-..|+++-.+. +.+-
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~iv 469 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIV 469 (733)
T ss_pred eeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEe
Confidence 36789999999999999999 89999999999999999999999886 56689999999998866666665444 5555
Q ss_pred eCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCc----eeEeecCCCCCceeEEEEcCCCCE
Q 001534 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTRNR 602 (1058)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~ 602 (1058)
+..-+..+.. -+....|+.+-.....+..+..|.-.... -++..-.|.. .|+.+.|+..|.|
T Consensus 470 np~~G~~~e~-------------~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k-~i~~vtWHrkGDY 535 (733)
T KOG0650|consen 470 NPIFGDRLEV-------------GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPK-SIRQVTWHRKGDY 535 (733)
T ss_pred Cccccchhhh-------------cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCC-ccceeeeecCCce
Confidence 4332211110 01111222221111234557778654211 1223333444 7999999999999
Q ss_pred EEEEeC---CCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCccccc
Q 001534 603 FLAAGD---EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1058)
Q Consensus 603 l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 679 (1058)
|++... ...|.|+++........+.... +.+.++.|+|...+|++++. ..|+|||+..+ .+++.+
T Consensus 536 latV~~~~~~~~VliHQLSK~~sQ~PF~ksk--G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq-elvKkL-------- 603 (733)
T KOG0650|consen 536 LATVMPDSGNKSVLIHQLSKRKSQSPFRKSK--GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ-ELVKKL-------- 603 (733)
T ss_pred EEEeccCCCcceEEEEecccccccCchhhcC--CceeEEEecCCCceEEEEec-cceEEEehhHH-HHHHHH--------
Confidence 999653 4568899988766554443332 36889999999999888876 48999988654 222111
Q ss_pred CCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCcc
Q 001534 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1058)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~ 759 (1058)
T Consensus 604 -------------------------------------------------------------------------------- 603 (733)
T KOG0650|consen 604 -------------------------------------------------------------------------------- 603 (733)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCC
Q 001534 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839 (1058)
Q Consensus 760 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 839 (1058)
+.+
T Consensus 604 -------------------------------------------------------------------------~tg---- 606 (733)
T KOG0650|consen 604 -------------------------------------------------------------------------LTG---- 606 (733)
T ss_pred -------------------------------------------------------------------------hcC----
Confidence 111
Q ss_pred CCCeeEEEEccCCcEEEEEe-CCeEEEEECCC-ceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcc-----
Q 001534 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR----- 912 (1058)
Q Consensus 840 ~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~----- 912 (1058)
...|..++++|.|.-|+.++ |+.+..||++- .+..++++.|...+++++|++ .-.++|+|+.||++.|+.-.
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl 685 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDL 685 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhh
Confidence 34466788888888888888 88888888874 356778888999999999999 88899999999999998532
Q ss_pred -cc---eeEEEEeCCCCC----eEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001534 913 -VD---EVKTKLKGHQNR----ITGLAFSPTLNALVSSGADAQLCMWS 952 (1058)
Q Consensus 913 -~~---~~~~~l~~h~~~----v~~l~~spd~~~l~s~s~D~~i~iwd 952 (1058)
.. -+++.|++|... |..+.|+|...+|.|++.||+|++|.
T Consensus 686 ~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 686 LQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred hcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 11 246678899766 88999999999999999999999983
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-22 Score=214.90 Aligned_cols=248 Identities=12% Similarity=0.190 Sum_probs=197.2
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCC-CCEEEEE
Q 001534 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVA 426 (1058)
Q Consensus 348 ~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd-~~~l~~~ 426 (1058)
....|+|+.-..+++|+++..|.|.+||+..... ..+...+..|+..|+++.|++. ..+|++|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r----------------nk~l~~f~EH~Rs~~~ldfh~tep~iliSG 152 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR----------------NKLLTVFNEHERSANKLDFHSTEPNILISG 152 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCcccc----------------chhhhHhhhhccceeeeeeccCCccEEEec
Confidence 4567888866667999999999999999986211 0112237889999999999994 5688999
Q ss_pred eCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCC-ceeEEeeCCCCCeEEEEe
Q 001534 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCP 505 (1058)
Q Consensus 427 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~-~~~~~l~~~~~~v~~~~~ 505 (1058)
+.||+|++||++..+... ++.+....|++|.|+|...+ .++++.+.|.+++||++.. ++...+..|.++|.|+.|
T Consensus 153 SQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 153 SQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred CCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 999999999999876555 56677889999999997665 8999999999999999864 567788999999999999
Q ss_pred cccCCccEEEEEeCCCeEEEEeCCCCCceEEecC-CCCcEEEEEEcCCCCEE-EEEecCCCCCceEEEeeCCCCc-eeEe
Q 001534 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTRL-FSCGTSKEGESHLVEWNESEGA-IKRT 582 (1058)
Q Consensus 506 ~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l-~~~~~~~~~~~~i~~wd~~~~~-~~~~ 582 (1058)
+| ++.+||+|+.|+.|++||+.+......... ...++..+.|-|...+. ++++. -.+..|++||++..- +..+
T Consensus 229 hP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 229 HP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred cC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeecccccccee
Confidence 97 558999999999999999987655443333 34589999999987764 45543 247789999998653 5667
Q ss_pred ecCCCCCceeEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 001534 583 YSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNM 620 (1058)
Q Consensus 583 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 620 (1058)
+..|.. .++.++|.. |...+.+++.||+|..-..++.
T Consensus 305 ~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 305 FLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeccCc-cccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 888877 888999965 4557788899998876655543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-22 Score=212.12 Aligned_cols=297 Identities=11% Similarity=0.187 Sum_probs=228.5
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC-CCCEEE
Q 001534 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLG 424 (1058)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-d~~~l~ 424 (1058)
.....++...++-..+++.| ...++||.+..........+. . .. -..-...+..+.|+. +.++||
T Consensus 39 k~~~nAIs~nr~~~qiv~AG--rs~lklyai~~~~~~~~~~~~--~-----k~-----kqn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAG--RSLLKLYAINPNDFSEKCNHR--F-----KT-----KQNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcceeEEec--ccceeeEeeCcccCCcceeee--c-----cc-----ccceeeehhhcccccchhhhhe
Confidence 45677888888877666555 457788877654332211110 0 00 001123466788886 678999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEE
Q 001534 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1058)
Q Consensus 425 ~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~ 504 (1058)
|++..|.|.+||+.....-.....+..|...++++.|++...+ +|++||.||+|++||++..+...++.+....|..+.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873222223367889999999999998887 899999999999999999999999999999999999
Q ss_pred ecccCCccEEEEEeCCCeEEEEeCCCCCc-eEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEee
Q 001534 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1058)
Q Consensus 505 ~~~~~~~~~l~s~s~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1058)
|+|.. +.+++++.+.|.+++||++.... ...+..|.++|.++.|+|++.+|++||. |+.|+|||..+++.....
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCcccee
Confidence 99975 58999999999999999997654 5578899999999999999999999985 888999999877765555
Q ss_pred cCCCCCceeEEEEcCCCCEEE-EEe--CCCeEEEEECCCCc-eEEEEecCCCCCCcceEEEeC-CCCEEEEEECCCcEEE
Q 001534 584 SGFRKRSLGVVQFDTTRNRFL-AAG--DEFQIKFWDMDNMN-MLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 658 (1058)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~-~~~--~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 658 (1058)
..+...++.++.|-|...+.+ +++ .|-.|+|||++..- +..++..|.. .++.++|.. |...+.+++.||+|..
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~--~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD--SVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc--cccceeccCCCceeeEeecCccHHHH
Confidence 556666899999999876544 443 68899999998543 4455555544 688899975 6677889999998866
Q ss_pred EECCCC
Q 001534 659 LANSDG 664 (1058)
Q Consensus 659 w~~~~~ 664 (1058)
-.+.+.
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 555444
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=179.09 Aligned_cols=215 Identities=12% Similarity=0.160 Sum_probs=174.1
Q ss_pred cCCCcCeEEEEECC-CCCEEEEEeCCCeEEEEEecCCCcee------------eeeeeecCcCCeEEEEEecCCCceEEE
Q 001534 405 NDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELR------------QHLEIDAHVGGVNDIAFAHPNKQLCIV 471 (1058)
Q Consensus 405 ~~h~~~v~~~~~sp-d~~~l~~~~~d~~i~vwd~~~~~~~~------------~~~~~~~h~~~v~~~~fs~d~~~~~l~ 471 (1058)
..|.+.|+++...+ .|+++++|+.||.|.+||++.....+ ....-.+|.-.|.++.|-|-... ++.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG-mFt 118 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG-MFT 118 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-eee
Confidence 45999999999998 68999999999999999998653111 01112468889999999997665 899
Q ss_pred EEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCc-cEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEc
Q 001534 472 TCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI-QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYS 550 (1058)
Q Consensus 472 s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~-~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s 550 (1058)
+++.|.+++|||..+-+....|+ ..+.|.+-+++|-... .++++|..|-.|++.|+..+.....+.+|...|.++.|+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 99999999999999988887776 5677888888776543 356677778899999999999999999999999999999
Q ss_pred CCCCEEEEEecCCCCCceEEEeeCCCC-ceeEeecCCC-------------CCceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 001534 551 ADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFR-------------KRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1058)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 616 (1058)
|...+++..+. .|+.|++||++.. .+...+..|. .+.++.++|..++.++++.+.|..+++|+
T Consensus 198 p~~e~vLatgs---aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 198 PSSEWVLATGS---ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred cCceeEEEecC---CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 99998775542 5899999999754 3333333322 23788999999999999999999999999
Q ss_pred CCCCceEE
Q 001534 617 MDNMNMLT 624 (1058)
Q Consensus 617 ~~~~~~~~ 624 (1058)
..+|+...
T Consensus 275 ~~~G~ntl 282 (397)
T KOG4283|consen 275 MESGRNTL 282 (397)
T ss_pred cccCcccc
Confidence 99887543
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-21 Score=193.71 Aligned_cols=251 Identities=12% Similarity=0.138 Sum_probs=194.5
Q ss_pred eEEEEECC-------CCCEEEEEeCCCeEEEEEecCCCceeeeee------------------eecCcCCeEEEEEecCC
Q 001534 411 VNRCVWGP-------DGLMLGVAFSKHIVHLYTYNPTGELRQHLE------------------IDAHVGGVNDIAFAHPN 465 (1058)
Q Consensus 411 v~~~~~sp-------d~~~l~~~~~d~~i~vwd~~~~~~~~~~~~------------------~~~h~~~v~~~~fs~d~ 465 (1058)
..|++|.. .|+++|.|+.|..|.|||+.-...+.+... -.+|+..|.+++|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666643 367999999999999999875433222222 23689999999999887
Q ss_pred CceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEE
Q 001534 466 KQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCT 545 (1058)
Q Consensus 466 ~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1058)
++ +|++||.|.+|++||+.+|++..++..|...|.++.|++... .+|++|+.|++|.+.|.+.....-..-.-.+.|.
T Consensus 256 ~n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE 333 (463)
T KOG0270|consen 256 RN-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE 333 (463)
T ss_pred ce-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCceEEeccceE
Confidence 77 899999999999999999999999999999999999998654 8999999999999999995333222222345788
Q ss_pred EEEEcCCCCEEEEEecCCCCCceEEEeeCCCC-ceeEeecCCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceE
Q 001534 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNML 623 (1058)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 623 (1058)
.++|.|.....+.++. .+|+++-+|++.. +++.++..|.+ .|.++++++.- ..+++++.|+.|++|++..-+..
T Consensus 334 kv~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred EEEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 9999998877776664 4899999999974 89999999998 89999998765 45777999999999998754443
Q ss_pred EEEecCCCCCCcceEEEeCCC-CEEEEEECCCcEEEEECCCCcee
Q 001534 624 TTVDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGVRL 667 (1058)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~ 667 (1058)
......-..+...|.++.|+- ..++.|+..+.+++||+.+....
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 222211122235677777754 46778888888999999887433
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-21 Score=198.69 Aligned_cols=327 Identities=12% Similarity=0.239 Sum_probs=237.6
Q ss_pred eeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCC--EEEEEECCCcE
Q 001534 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS--LLAVTTSDNGI 656 (1058)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i 656 (1058)
+...+.+|.+ .|.+++..|.|.+|++|+.||+|+||.+.+|+++.++...+ .|.+++|+|.+. .||++... .+
T Consensus 392 ~~lvyrGHtg-~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~-~~ 466 (733)
T KOG0650|consen 392 CALVYRGHTG-LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGE-CV 466 (733)
T ss_pred eeeeEeccCC-eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecC-ce
Confidence 4456788888 89999999999999999999999999999999999998765 589999999654 34544444 46
Q ss_pred EEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCC
Q 001534 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1058)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1058)
.|.+..-|.++.. +....... ...
T Consensus 467 ~ivnp~~G~~~e~---~~t~ell~----------------------------------------------~~~------- 490 (733)
T KOG0650|consen 467 LIVNPIFGDRLEV---GPTKELLA----------------------------------------------SAP------- 490 (733)
T ss_pred EEeCccccchhhh---cchhhhhh----------------------------------------------cCC-------
Confidence 6655433311110 00000000 000
Q ss_pred ccccccccccccccccCCcCCc--cceeEEecCCCcCcCceEEEEEccCCceEEEeecc---ceEEEEEcccCCCCCCCc
Q 001534 737 KPRVAEDVDKIKSWRIPDISDP--SQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN---AVHKLWKWQRTERNPSGK 811 (1058)
Q Consensus 737 ~~~~~~~~~~v~~w~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~ 811 (1058)
.-...+..+..|.-....+. +.+..+. |...|..+.|...|.+|++...+ ..|.|+++.
T Consensus 491 --~~~~p~~~~~~W~~~~~~e~~~~v~~~I~-----~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS--------- 554 (733)
T KOG0650|consen 491 --NESEPDAAVVTWSRASLDELEKGVCIVIK-----HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS--------- 554 (733)
T ss_pred --CccCCcccceeechhhhhhhccceEEEEe-----cCCccceeeeecCCceEEEeccCCCcceEEEEecc---------
Confidence 00111235566665532221 2233333 77899999999999999988775 345555443
Q ss_pred ccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEeCCeEEEEECCCceEEEEecCCCCCeEEEEEeC
Q 001534 812 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 891 (1058)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~ 891 (1058)
..... .++.. . .+.+.++.|+|...+|++++...|+|||+...++++.+......|..++.+|
T Consensus 555 -------------K~~sQ-~PF~k--s-kG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp 617 (733)
T KOG0650|consen 555 -------------KRKSQ-SPFRK--S-KGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP 617 (733)
T ss_pred -------------ccccc-Cchhh--c-CCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence 22222 12322 2 6789999999999999999999999999998888888877778899999999
Q ss_pred CCCCEEEEEeCCCeEEEEEccc-ceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-c---ccceeeec
Q 001534 892 QDNNIIAIGMEDSSVQIYNVRV-DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE-K---LKSRFIQA 966 (1058)
Q Consensus 892 ~~~~~lasg~~dg~I~iwd~~~-~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~-~---~~~~~~~~ 966 (1058)
+|.-|+.|+.|+.+..+|++- .++.++++.|...|++++|++.=.+++||+.||++.|+.-.--. . .....+..
T Consensus 618 -~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 618 -NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred -CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 888899999999999999984 46788899999999999999999999999999999998532111 1 11234555
Q ss_pred CCCCCC-CCCCeeEEEEcCCCcEEEEE-eCCeEEEE
Q 001534 967 PAGRQS-PLVGETKVQFHNDQTHLLVV-HESQISVY 1000 (1058)
Q Consensus 967 ~~~~~~-~~~~v~~~~fs~d~~~l~~~-~d~~i~vw 1000 (1058)
..+|.. ....|..+.|.|...+|+++ .||+|++|
T Consensus 697 L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 666652 12458899999999999995 99999998
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-21 Score=198.74 Aligned_cols=291 Identities=17% Similarity=0.194 Sum_probs=212.1
Q ss_pred eEEEEec--CCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEe
Q 001534 350 MSMDFHP--QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1058)
Q Consensus 350 ~~~~fsp--dg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~ 427 (1058)
.++.|++ +.+++||.+..||.|.++|.....-... ..+......|...|..+.|-|....|++++
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~e-------------e~~lk~~~aH~nAifDl~wapge~~lVsas 119 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLE-------------ERQLKKPLAHKNAIFDLKWAPGESLLVSAS 119 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchh-------------hhhhcccccccceeEeeccCCCceeEEEcc
Confidence 3456664 5567999999999999999876432200 001112456999999999999777899999
Q ss_pred CCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCc-------------------
Q 001534 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR------------------- 488 (1058)
Q Consensus 428 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~------------------- 488 (1058)
.|.++++||+++.+..... .+.+|.+.|.+++|.|++.. .|++|+.||.|.|||++-..
T Consensus 120 GDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p 197 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP 197 (720)
T ss_pred CCceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence 9999999999998776643 46799999999999999887 89999999999999986321
Q ss_pred -e-------eEEeeCCCCCeE----EEEecccCCccEEEEEeC-CCeEEEEeCCCCCceEE--------ecCC---CCcE
Q 001534 489 -K-------QYTFEGHEAPVY----SVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVD--------YDAP---GNWC 544 (1058)
Q Consensus 489 -~-------~~~l~~~~~~v~----~~~~~~~~~~~~l~s~s~-d~~i~~wd~~~~~~~~~--------~~~~---~~~v 544 (1058)
+ ++....+...|. .+.| .|...|++++. |+.|++||++....... +..+ ...+
T Consensus 198 tpskp~~kr~~k~kA~s~ti~ssvTvv~f---kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~ 274 (720)
T KOG0321|consen 198 TPSKPLKKRIRKWKAASNTIFSSVTVVLF---KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQ 274 (720)
T ss_pred CCCchhhccccccccccCceeeeeEEEEE---eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeee
Confidence 0 111123333343 4444 34478999888 99999999997654432 1222 3367
Q ss_pred EEEEEcCCCCEEEEEecCCCCCceEEEeeCCCC--ceeEeecCCCCCcee-EEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 001534 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYSGFRKRSLG-VVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1058)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1058)
.++.....|.++++.+. |+.|+.||+.+- .++..+.++....+. .-..+|++.++++|+.|...++|.+.+.+
T Consensus 275 ~nL~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 275 VNLILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred EEEEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence 78888888999887764 788999999853 344555554332221 23468999999999999999999998765
Q ss_pred eEEE-EecCCCCCCcceEEEeCC-CCEEEEEECCCcEEEEECCCC
Q 001534 622 MLTT-VDADGGLPASPRLRFNKE-GSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 622 ~~~~-~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
.-.. +.+ +...|++++|.|. -.-++++++|..+++|++..+
T Consensus 351 ~~~~~l~G--ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 351 APPALLLG--HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CChhhhhC--cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 4333 333 3447899999883 334777799999999999765
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=196.63 Aligned_cols=263 Identities=19% Similarity=0.218 Sum_probs=189.8
Q ss_pred CCcCeE--EEEECC---CCCEEEEEeCCCeEEEEEecCCCce---eeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCc
Q 001534 407 AAISVN--RCVWGP---DGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1058)
Q Consensus 407 h~~~v~--~~~~sp---d~~~l~~~~~d~~i~vwd~~~~~~~---~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~ 478 (1058)
|.-++. +..|++ ....|+.+..||.|.++|.....-- +++.....|...|.++.|.| |+. .|++++.|.+
T Consensus 46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT 123 (720)
T KOG0321|consen 46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDST 123 (720)
T ss_pred CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCce
Confidence 444444 367776 3447899999999999998753211 22335668999999999999 554 8999999999
Q ss_pred EEEEEcCCCceeEE--eeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCce----------------------
Q 001534 479 IKVWDVVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---------------------- 534 (1058)
Q Consensus 479 v~vwd~~~~~~~~~--l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~---------------------- 534 (1058)
+++||+++++++.. +.||.+.|.++||.+... ..|++|+.||.|.+||++-....
T Consensus 124 ~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp 202 (720)
T KOG0321|consen 124 IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP 202 (720)
T ss_pred eeeeeeccceeecceeecccccccchhhhccCCC-cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence 99999999998876 889999999999998754 79999999999999998743310
Q ss_pred -----EEecCCCCcEEE---EEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeE--------eecCCC--CCceeEEEE
Q 001534 535 -----VDYDAPGNWCTM---MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR--------TYSGFR--KRSLGVVQF 596 (1058)
Q Consensus 535 -----~~~~~~~~~v~~---~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~--------~~~~~~--~~~v~~~~~ 596 (1058)
.....+...|.+ +.+..|...|++++. .|+.|++||++...... .+..+. ...+.++..
T Consensus 203 ~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga---~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l 279 (720)
T KOG0321|consen 203 LKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA---ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL 279 (720)
T ss_pred hhccccccccccCceeeeeEEEEEeccceeeeccC---CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe
Confidence 011223334444 566689999999875 68999999998654322 222221 114567777
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCc--eEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCC
Q 001534 597 DTTRNRFLAAGDEFQIKFWDMDNMN--MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674 (1058)
Q Consensus 597 ~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 674 (1058)
...|.+|++.+.|+.|++||+.+.. ++..+.++.....-..-..+||+.++++|+.|...++|.+.+.......+.+|
T Consensus 280 DssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Gh 359 (720)
T KOG0321|consen 280 DSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGH 359 (720)
T ss_pred cCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCc
Confidence 7888999998899999999998643 33333332221122234568999999999999999999998775444444444
Q ss_pred c
Q 001534 675 A 675 (1058)
Q Consensus 675 ~ 675 (1058)
.
T Consensus 360 t 360 (720)
T KOG0321|consen 360 T 360 (720)
T ss_pred c
Confidence 3
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=185.50 Aligned_cols=303 Identities=18% Similarity=0.229 Sum_probs=222.3
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~ 424 (1058)
...+|..+.|.+++...+|+|+.|..|+||.++.++.-... . ...-...+..|...|+++.|+|+|+.||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-~---------~V~y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-M---------KVEYLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-e---------eEEEeecccCCcceeEEEEEcCCcCeee
Confidence 45799999999998768999999999999999876543310 0 1112334889999999999999999999
Q ss_pred EEeCCCeEEEEEec--------C-----CCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeE
Q 001534 425 VAFSKHIVHLYTYN--------P-----TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1058)
Q Consensus 425 ~~~~d~~i~vwd~~--------~-----~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~ 491 (1058)
+|+.+|.|.+|... + .+.....+.+.+|...|..++|+|++. ++++++.|.++++||+..|..+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999876 3 222333456788999999999999999 89999999999999999999999
Q ss_pred EeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEec-----------------------CCCCcEEEEE
Q 001534 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-----------------------APGNWCTMMA 548 (1058)
Q Consensus 492 ~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~-----------------------~~~~~v~~~~ 548 (1058)
.+.+|...|..++|.|-. +++++-+.|...+.+.+...+...... ....-...++
T Consensus 160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred eccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 999999999999999765 899999999877777655433222110 0011345678
Q ss_pred EcCCCCEEEEEecCCCC-----CceEEEeeCCC-CceeEeecCCCCCceeEEEEcC------------------CCCEEE
Q 001534 549 YSADGTRLFSCGTSKEG-----ESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDT------------------TRNRFL 604 (1058)
Q Consensus 549 ~s~~~~~l~~~~~~~~~-----~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~------------------~~~~l~ 604 (1058)
|+|||..+++....-+- .+..++++-.. .++...+.+... ....+.|+| -+-.++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 99999999876431111 23345555332 233444444333 333333332 222344
Q ss_pred EEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001534 605 AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
.++ ...|++||.++..++.....- |...++.++|++||..++..+.||...+..++..
T Consensus 317 iAt-~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 317 IAT-KNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred Eee-cceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 444 457999999998888777543 3357999999999999999999999888877665
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=173.96 Aligned_cols=254 Identities=13% Similarity=0.190 Sum_probs=193.9
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCC-CceeeeeeeecCcCCeEEEEEecC--CCceEEEEEcCCCcEE
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 480 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~h~~~v~~~~fs~d--~~~~~l~s~~~d~~v~ 480 (1058)
-.+|.+-|+++.|.+.|+.+|+|+.|++|+|||.+.. .........+.|.+.|..+.|.+- |+ .+++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 4679999999999999999999999999999996443 345555578899999999999764 55 899999999999
Q ss_pred EEEcCC------C---ceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEE------ec-------
Q 001534 481 VWDVVA------G---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD------YD------- 538 (1058)
Q Consensus 481 vwd~~~------~---~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~------~~------- 538 (1058)
||.-.. + ....++......|+.+.|.|..-|-.+++++.||.+|+|+.-....... +.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997421 1 1234667788899999999999999999999999999998765433221 11
Q ss_pred CCCCcEEEEEEcCC---CCEEEEEecC-CCCCceEEEeeCCCC----ceeEeecCCCCCceeEEEEcCCC----CEEEEE
Q 001534 539 APGNWCTMMAYSAD---GTRLFSCGTS-KEGESHLVEWNESEG----AIKRTYSGFRKRSLGVVQFDTTR----NRFLAA 606 (1058)
Q Consensus 539 ~~~~~v~~~~~s~~---~~~l~~~~~~-~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~ 606 (1058)
.+.....|+.|+|. ..+|++++.+ ...-+.++||....+ ..+.++.++.. +|+.++|.|+- ..++++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEe
Confidence 23446789999874 3567776632 112346778865543 24556777777 89999999963 468889
Q ss_pred eCCCeEEEEECCCCc-----------------eEEEEe-cCCCCCCcceEEEeCCCCEEEEEECCCcEEEEEC
Q 001534 607 GDEFQIKFWDMDNMN-----------------MLTTVD-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1058)
Q Consensus 607 ~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 661 (1058)
+.|| |+||++.... .+..+. ...|.+.|..+.|+-.|..|++.+.||.||+|..
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 9999 9999987311 122222 3455668999999999999999999999999975
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-21 Score=218.57 Aligned_cols=251 Identities=15% Similarity=0.271 Sum_probs=207.5
Q ss_pred CcCeEEEEECCCCCE----EEEEeCCCeEEEEEecC---CCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEE
Q 001534 408 AISVNRCVWGPDGLM----LGVAFSKHIVHLYTYNP---TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1058)
Q Consensus 408 ~~~v~~~~~spd~~~----l~~~~~d~~i~vwd~~~---~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~ 480 (1058)
....+.++|++.|.. ||.|..||.|.+||... +...........|.+.|..+.|++.+.+ +|++|+.||.|.
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~ 142 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEIL 142 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEE
Confidence 456889999998775 88889999999999876 4444444567789999999999999887 899999999999
Q ss_pred EEEcCCCceeEEee--CCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCC--cEEEEEEcCCCCE-
Q 001534 481 VWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTR- 555 (1058)
Q Consensus 481 vwd~~~~~~~~~l~--~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~- 555 (1058)
|||+.+-+.-.++. .....|.+++|+.. ..++|++++.+|.+.+||++..+.+..+..+.. .+..++|+|+...
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence 99998865554442 24578999999864 458899999999999999999888887766554 5789999998765
Q ss_pred EEEEecCCCCCceEEEeeCCC-CceeEeecCCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEecCCCCC
Q 001534 556 LFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633 (1058)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1058)
+++++ +.++...|.+||++. ..+++.+.+|.. .|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+.
T Consensus 222 l~~As-~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n-- 297 (1049)
T KOG0307|consen 222 LLVAS-GDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN-- 297 (1049)
T ss_pred eeeec-CCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--
Confidence 44444 456688999999985 457788888887 79999999877 7888899999999999999999999987544
Q ss_pred CcceEEEeCCC-CEEEEEECCCcEEEEECCCC
Q 001534 634 ASPRLRFNKEG-SLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 634 ~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~ 664 (1058)
.+..+.|+|.. ..+++++.||.|.|+.+.+.
T Consensus 298 W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 298 WCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 68999999955 48899999999999998765
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-20 Score=176.75 Aligned_cols=289 Identities=17% Similarity=0.269 Sum_probs=212.5
Q ss_pred CCCCeeEEEEec----CCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCC-
Q 001534 345 QGSNVMSMDFHP----QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD- 419 (1058)
Q Consensus 345 h~~~V~~~~fsp----dg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd- 419 (1058)
|+.+|..++|.+ +...++|+.+ ...+.+|+......+. .+|...-..|......++|+-|
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Esfytcsw~yd~ 101 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIR--------------LLQSYADEDHDESFYTCSWSYDS 101 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcccee--------------eeeeccCCCCCcceEEEEEEecC
Confidence 788999999994 3333555544 5688899887543221 1111112357888899999875
Q ss_pred ---CCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEe---
Q 001534 420 ---GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--- 493 (1058)
Q Consensus 420 ---~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l--- 493 (1058)
..++|+|+.-|.|+|.|+.+++... .+.+|...|+.+.|.|+..+ +++++|.|.+|++||+++..++..|
T Consensus 102 ~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 102 NTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred CCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEeccc
Confidence 3489999999999999999987766 77899999999999999987 8999999999999999999999876
Q ss_pred eCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEE----------------------------ecCCCCcEE
Q 001534 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD----------------------------YDAPGNWCT 545 (1058)
Q Consensus 494 ~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~----------------------------~~~~~~~v~ 545 (1058)
.+|.+.|.++.|+++ |.+|++++.|.++++|++...+.... ...|...|-
T Consensus 178 egHrdeVLSvD~~~~--gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLD--GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccCcEEEEEEcCC--CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 469999999999954 47999999999999999984321110 111222333
Q ss_pred EEEEcCCCCEEEEEecCCCCCceEEEeeC-CCCce-------------eEeecCCCCCcee--EEEEcCCCCEEEEEeCC
Q 001534 546 MMAYSADGTRLFSCGTSKEGESHLVEWNE-SEGAI-------------KRTYSGFRKRSLG--VVQFDTTRNRFLAAGDE 609 (1058)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~-~~~~~-------------~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~d 609 (1058)
++.|- |+++++-+. ++.|..|.. +-++. +..+..... .+. ..+|.|-++.|+.|...
T Consensus 256 Cvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~~~~la~gnq~ 328 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPWQKMLALGNQS 328 (385)
T ss_pred HHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHHHHHHhhccCC
Confidence 33332 466776653 668999987 22221 122222221 233 34567778899999999
Q ss_pred CeEEEEECCCCceE--EEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEEC
Q 001534 610 FQIKFWDMDNMNML--TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1058)
Q Consensus 610 g~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 661 (1058)
|.|++||++..++. .++..+.....|...+|+.||..|+..++|++|.-||.
T Consensus 329 g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 329 GKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 99999999987663 34444445567899999999999999999999999985
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.6e-22 Score=208.68 Aligned_cols=233 Identities=11% Similarity=0.218 Sum_probs=209.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~ 424 (1058)
|...|.|+..-..++ .+++|+.|..+-+|.+..-..+.. +.+|..+|.++.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcchhhhc
Confidence 677888998866665 899999999999998876444332 789999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEE
Q 001534 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1058)
Q Consensus 425 ~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~ 504 (1058)
+|+.+|+|++||+...+.++ +|.+|...+.++.|+|-+. ++++|+.|+.+++||++..-+.+.+.+|...|..+.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999988777 8889999999999999999 789999999999999998889999999999999999
Q ss_pred ecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeec
Q 001534 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1058)
Q Consensus 505 ~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1058)
|+| +|.+++++++|.++++||+..++....+..|...+.++.|+|..-.++.|+. |.++++||+++.+.+....
T Consensus 162 lsP--~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 LSP--DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSGK 235 (825)
T ss_pred ecC--CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeeccC
Confidence 995 5589999999999999999999999999999999999999999888888874 8889999999988888877
Q ss_pred CCCCCceeEEEEcCCCCEEEEEeCC
Q 001534 585 GFRKRSLGVVQFDTTRNRFLAAGDE 609 (1058)
Q Consensus 585 ~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1058)
.... .|.+.+|+|++..+++|...
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CccC-CceeeeecCCceeeecCchh
Confidence 7755 89999999999988887654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-17 Score=188.21 Aligned_cols=374 Identities=22% Similarity=0.394 Sum_probs=287.3
Q ss_pred eeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCc-eeEEeeCCCC-CeEEEEecccCCcc-EEEEEeC-CCeE
Q 001534 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEA-PVYSVCPHHKESIQ-FIFSTAI-DGKI 523 (1058)
Q Consensus 448 ~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~-~~~~l~~~~~-~v~~~~~~~~~~~~-~l~s~s~-d~~i 523 (1058)
.+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccE
Confidence 3457899999999999998 78888899999999998887 6777776443 77777774 45555 5555455 9999
Q ss_pred EEEeCCC-CCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCC-
Q 001534 524 KAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN- 601 (1058)
Q Consensus 524 ~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 601 (1058)
.+|+... ......+..|...+..++|+|++..+++++. .++.+++|+...+..+..+.+|.. .+.+++|+|++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 212 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHTD-PVSSLAFSPDGGL 212 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCCC-ceEEEEEcCCcce
Confidence 9999998 6777788889999999999999998877752 388899999999888888888777 899999999998
Q ss_pred EEEEEeCCCeEEEEECCCCceEE-EEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccC
Q 001534 602 RFLAAGDEFQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (1058)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 680 (1058)
.+++++.|+.|++||...+.... .+..+... . ...|+|++..+++++.|+.+++|+...........
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------- 280 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS--V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--------- 280 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEeeecCCCCcc--e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---------
Confidence 44455899999999988777777 46555442 2 22899999899999999999999987652201000
Q ss_pred CCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccc
Q 001534 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1058)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~ 760 (1058)
T Consensus 281 -------------------------------------------------------------------------------- 280 (466)
T COG2319 281 -------------------------------------------------------------------------------- 280 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCC
Q 001534 761 IKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 840 (1058)
Q Consensus 761 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 840 (1058)
..|...+.++.+.|++..+++++.|+.+.+|+...... ..... ...| .
T Consensus 281 --------~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~-~~~~-~ 328 (466)
T COG2319 281 --------SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL----------------------LSSLT-LKGH-E 328 (466)
T ss_pred --------ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce----------------------EEEee-eccc-C
Confidence 01567788899999888898888888889996543211 10000 1125 5
Q ss_pred CCeeEEEEccCCcEEEEE-e-CCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEE-EeCCCeEEEEEcccceeE
Q 001534 841 ESAACIALSKNDSYVMSA-S-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI-GMEDSSVQIYNVRVDEVK 917 (1058)
Q Consensus 841 ~~i~~~~~s~d~~~la~~-s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~las-g~~dg~I~iwd~~~~~~~ 917 (1058)
..+..+.+++++..++.+ . |+.+.+|+.............. .+..+.+++ + ..+.. +..++.+.+|+.......
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 405 (466)
T COG2319 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLL 405 (466)
T ss_pred CceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeee
Confidence 578889884343566666 4 7889999998877333333222 288999998 7 55554 889999999999988877
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001534 918 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1058)
Q Consensus 918 ~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~ 955 (1058)
.....+...+....+++++..+++++.++.+++|+..+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 406 RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred eeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 76665547899999999999999999999999999988
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=173.65 Aligned_cols=288 Identities=13% Similarity=0.188 Sum_probs=211.7
Q ss_pred eeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEEC-------CCCC
Q 001534 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG-------PDGL 421 (1058)
Q Consensus 349 V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-------pd~~ 421 (1058)
...+.|||||..+ .+-+.|..+.+|++...-.-....-. ...+.+..+-......|...+|- |+..
T Consensus 52 ~kgckWSPDGSci-L~~sedn~l~~~nlP~dlys~~~~~~------~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSPDGSCI-LSLSEDNCLNCWNLPFDLYSKKADGP------LNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred hccceeCCCCceE-EeecccCeeeEEecChhhcccCCCCc------cccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 4578999999854 55688999999998642211100000 00011111112234567777775 6778
Q ss_pred EEEEEeCCCeEEEEEecCCCceeeeeeeecCcC---CeEEEEEecCCCceEEEEEcCCCcEEEEEc-CCCcee--EEe--
Q 001534 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG---GVNDIAFAHPNKQLCIVTCGDDKMIKVWDV-VAGRKQ--YTF-- 493 (1058)
Q Consensus 422 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~---~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~-~~~~~~--~~l-- 493 (1058)
++|+.+.+.-|++||.-+|+.......+ .|.. ...+++|+|||. .|+. +....|+++|+ +.|+.- ...
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~y-dh~de~taAhsL~Fs~DGe--qlfa-GykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAY-DHQDEYTAAHSLQFSPDGE--QLFA-GYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhh-hhHHhhhhheeEEecCCCC--eEee-cccceEEEeeccCCCCCCcchhhhh
Confidence 9999999999999999998765433222 2433 356899999999 4554 45789999999 555432 211
Q ss_pred ---eCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEE
Q 001534 494 ---EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1058)
Q Consensus 494 ---~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1058)
.+..+.+.+++|+|.. ...++.++...++-+|.-...++...+-+|.+.|+.+.|.++|+.|++++. .+..|.
T Consensus 201 ~~k~gq~giisc~a~sP~~-~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMD-SKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKIL 276 (406)
T ss_pred cccccccceeeeeeccCCC-CcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeEE
Confidence 2346788899999864 468999999999999998888999999999999999999999999999986 577899
Q ss_pred EeeCCC-CceeEeecCCCCCceeEE--EEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEecCCCCCCcceEEEeCCCCE
Q 001534 571 EWNESE-GAIKRTYSGFRKRSLGVV--QFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSL 646 (1058)
Q Consensus 571 ~wd~~~-~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~ 646 (1058)
.||++. +.++..+..|....-..+ ...|++++|++|+.||.|++||+.. ++.+..+..+.. .++.++++|--.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCcccce
Confidence 999985 456677776655333334 4478999999999999999999998 676666665544 6899999999888
Q ss_pred EEEEECC
Q 001534 647 LAVTTSD 653 (1058)
Q Consensus 647 l~~~~~d 653 (1058)
+|+++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 8887654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-19 Score=184.29 Aligned_cols=268 Identities=10% Similarity=0.127 Sum_probs=206.0
Q ss_pred CcceeeecCCCCCccee------cCCccccceeEeec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCc
Q 001534 314 QSDEVSFAGVAHTPNVY------SQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP 386 (1058)
Q Consensus 314 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~ 386 (1058)
-+.+++|.|+|..+.+. ..|...+..+.+++ |.+.|+|++||.||+ .+|+|+.|..|.||+-.-...+.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W~~klEG~Lk--- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIWTSKLEGILK--- 89 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCc-eeccCCCceeEEEecccccceee---
Confidence 35668899998876654 45667888999998 999999999999998 68999999999999876544332
Q ss_pred ceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCC
Q 001534 387 FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466 (1058)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~ 466 (1058)
..|++.|.|+.|+|-...|++++-. ..-+|........+ ......|.+++|..||+
T Consensus 90 ------------------YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-----~kss~R~~~CsWtnDGq 145 (1081)
T KOG1538|consen 90 ------------------YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-----HKSSSRIICCSWTNDGQ 145 (1081)
T ss_pred ------------------eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-----hhhheeEEEeeecCCCc
Confidence 3599999999999999999998754 35688876643222 12345789999999999
Q ss_pred ceEEEEEcCCCcEEEEEcCCCceeEEee---CCCCCeEEEEecccCC---ccEEEEEeCCCeEEEEeCCCCCceEEecCC
Q 001534 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFE---GHEAPVYSVCPHHKES---IQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1058)
Q Consensus 467 ~~~l~s~~~d~~v~vwd~~~~~~~~~l~---~~~~~v~~~~~~~~~~---~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~ 540 (1058)
+++.|-.+|+|.+-+ .+|+....+. |...+|++++|+|... ...++......++.+|.++. +.+-.-..-
T Consensus 146 --ylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L 221 (1081)
T KOG1538|consen 146 --YLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRAL 221 (1081)
T ss_pred --EEEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccC
Confidence 899999999999998 5665544443 4778999999998642 25777777788888887653 222211222
Q ss_pred CCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001534 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1058)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 619 (1058)
+-...++.+.++|.+++.|+. ++.+.+|- +.|-.+.++.... ..|..++..|++++++.|+.||+|..|++..
T Consensus 222 ~FdP~CisYf~NGEy~LiGGs----dk~L~~fT-R~GvrLGTvg~~D-~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 222 NFDPCCISYFTNGEYILLGGS----DKQLSLFT-RDGVRLGTVGEQD-SWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred CCCchhheeccCCcEEEEccC----CCceEEEe-ecCeEEeeccccc-eeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 334568889999999999985 67788886 4466666665533 3899999999999999999999999999754
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=177.84 Aligned_cols=268 Identities=12% Similarity=0.187 Sum_probs=191.6
Q ss_pred ccceeEeecCCCCeeEEEEecCCC-eEEEEEeCCCcEEEEEccCcccc-ccCcceeecccccccccccccccCCCcCeEE
Q 001534 336 TKTVVRTLNQGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERL-AHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1058)
Q Consensus 336 ~~~~~~~~~h~~~V~~~~fspdg~-~lla~g~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 413 (1058)
|.-..+.+.|.+.++-+.-++-|+ .++|+=+..|.|.||++...-.. .......-+ +...+...+.+|...=..
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence 444456666888899998888753 35666678999999998642111 000000000 111223347889999999
Q ss_pred EEECCC-CCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCC---ce
Q 001534 414 CVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RK 489 (1058)
Q Consensus 414 ~~~spd-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~---~~ 489 (1058)
++|||- ...|++|..-+.|++|...++.-......+.+|+..|..++|||..+. +|++||.||+|+|||++.+ .+
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 999992 335788888888999999987644444467789999999999998887 8999999999999999988 33
Q ss_pred eEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCC---CceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCC
Q 001534 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1058)
Q Consensus 490 ~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1058)
+. .+.|.+.|+.|.|+... .+|++|+.||++++||+++. +.+..++.|..+|+++.|+|....++.++. .|
T Consensus 296 ~~-~kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D 369 (440)
T KOG0302|consen 296 VS-TKAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---ED 369 (440)
T ss_pred eE-eeccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CC
Confidence 33 37899999999999654 59999999999999999874 456688999999999999997665554432 48
Q ss_pred ceEEEeeCCCCce----------------eEeecCC-CCCceeEEEEcCCC-CEEEEEeCCCeEEEE
Q 001534 567 SHLVEWNESEGAI----------------KRTYSGF-RKRSLGVVQFDTTR-NRFLAAGDEFQIKFW 615 (1058)
Q Consensus 567 ~~i~~wd~~~~~~----------------~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw 615 (1058)
.+|.+||+..-.- .+-+-.| .+..+..+.|+++- .++++.+.|| +.||
T Consensus 370 ~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 370 NQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred CcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 8899999853210 0111122 11246677888764 3566666776 4444
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-19 Score=168.96 Aligned_cols=253 Identities=12% Similarity=0.206 Sum_probs=190.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC--CCCE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--d~~~ 422 (1058)
|.+-|.|+.|.+-|++ +|+|+.|++|+|||....... |.. ....+.|.+.|..+.|.+ -|+.
T Consensus 12 h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~-------W~~--------Ts~Wrah~~Si~rV~WAhPEfGqv 75 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGT-------WSC--------TSSWRAHDGSIWRVVWAHPEFGQV 75 (361)
T ss_pred CcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCc-------eEE--------eeeEEecCCcEEEEEecCccccce
Confidence 7788999999999985 788999999999997544321 211 122567999999999977 5999
Q ss_pred EEEEeCCCeEEEEEecCC------CceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCc------ee
Q 001534 423 LGVAFSKHIVHLYTYNPT------GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR------KQ 490 (1058)
Q Consensus 423 l~~~~~d~~i~vwd~~~~------~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~------~~ 490 (1058)
+|+++.|+++.||.-... .......++....+.|+++.|.|....+.+++++.||.++||+.-..- ..
T Consensus 76 vA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq 155 (361)
T KOG2445|consen 76 VATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ 155 (361)
T ss_pred EEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh
Confidence 999999999999975321 122333456677789999999998887799999999999999865432 22
Q ss_pred EEee-------CCCCCeEEEEecccCC-ccEEEEEeCC-----CeEEEEeCCCCCc----eEEecCCCCcEEEEEEcCCC
Q 001534 491 YTFE-------GHEAPVYSVCPHHKES-IQFIFSTAID-----GKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADG 553 (1058)
Q Consensus 491 ~~l~-------~~~~~v~~~~~~~~~~-~~~l~s~s~d-----~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~ 553 (1058)
+.++ .+..+..|+.|++..- ..+|+.|+.+ +.++||....... ..++..+..+|+.++|.|+-
T Consensus 156 ~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~ 235 (361)
T KOG2445|consen 156 HEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI 235 (361)
T ss_pred hhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence 2232 3667788888886532 2567777765 4788998766552 23567888999999999963
Q ss_pred ----CEEEEEecCCCCCceEEEeeCCCC--------------------ceeEeecCCCCCceeEEEEcCCCCEEEEEeCC
Q 001534 554 ----TRLFSCGTSKEGESHLVEWNESEG--------------------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE 609 (1058)
Q Consensus 554 ----~~l~~~~~~~~~~~~i~~wd~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1058)
..|++++ +|| |+||.+... +.+..+..|.. .|..+.|+-.|..|.+.|.|
T Consensus 236 Gr~y~~lAvA~----kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGdD 309 (361)
T KOG2445|consen 236 GRSYHLLAVAT----KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGDD 309 (361)
T ss_pred CCceeeEEEee----cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCCC
Confidence 3455665 466 999998631 13445667776 89999999999999999999
Q ss_pred CeEEEEECCC
Q 001534 610 FQIKFWDMDN 619 (1058)
Q Consensus 610 g~i~iwd~~~ 619 (1058)
|.|++|...-
T Consensus 310 G~VRLWkany 319 (361)
T KOG2445|consen 310 GCVRLWKANY 319 (361)
T ss_pred ceeeehhhhh
Confidence 9999997653
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7e-19 Score=169.60 Aligned_cols=408 Identities=12% Similarity=0.138 Sum_probs=257.2
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEE
Q 001534 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1058)
Q Consensus 413 ~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 492 (1058)
-+.|||+|+++|+++.- .+.|-|..+-+..... ..-..|..+.|..|... .+.....|+.|.+|++...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 46899999999999766 7778887775433211 12456888999998875 566778899999999999888888
Q ss_pred eeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEe
Q 001534 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1058)
Q Consensus 493 l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1058)
+.....++.+++|+|++. ++|.+...|-.|.+|.+.+..... +.-....+..++|+|||++.+.++.- |-...+.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc-cHHHHHHHH
Confidence 888899999999997643 677778889999999998755433 33345566899999999999988641 111122222
Q ss_pred eCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEe--CCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEE
Q 001534 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1058)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 650 (1058)
....-..++.+..... ..+.+.|+|||+.+++-. -+-.|..|.. + -.+..++|+|.+++|++|
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~-------------~-lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYER-------------G-LGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeee-------------c-cceeEEEeccccceEEee
Confidence 2223344555555554 577899999998877533 1222222221 1 147789999999999999
Q ss_pred ECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCC
Q 001534 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (1058)
Q Consensus 651 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1058)
+.|+.+|+.+--+- +.+..+ .|...+.
T Consensus 229 syD~~lrvlnh~tW-k~f~ef-lhl~s~~--------------------------------------------------- 255 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTW-KPFGEF-LHLCSYH--------------------------------------------------- 255 (447)
T ss_pred ccchhhhhhceeee-eehhhh-ccchhcc---------------------------------------------------
Confidence 99999999775433 111111 0100000
Q ss_pred ccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCC
Q 001534 731 SRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSG 810 (1058)
Q Consensus 731 ~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 810 (1058)
|.+..+...+. ... -.-...++.|.|..- ...+|.......
T Consensus 256 -------------dp~~~~~~ke~------~~~-------~ql~~~cLsf~p~~~---------~a~~~~~se~~Y---- 296 (447)
T KOG4497|consen 256 -------------DPTLHLLEKET------FSI-------VQLLHHCLSFTPTDL---------EAHIWEESETIY---- 296 (447)
T ss_pred -------------Cchhhhhhhhh------cch-------hhhcccccccCCCcc---------ccCccccchhhh----
Confidence 00000000000 000 000112334443321 001111000000
Q ss_pred cccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEeC---CeEEEEECCCceEEEEecCCCCCeEEE
Q 001534 811 KATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG---GKVSLFNMMTFKVMTMFMSPPPAATFL 887 (1058)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~sd---g~i~iwd~~~~~~~~~~~~~~~~i~~l 887 (1058)
..+...+.+.-.+ ..+ +.. +. .-.+.-++||+|..++|+-.| +.+.+||++..++...+. ...+|.+.
T Consensus 297 -E~~~~pv~~~~lk---p~t-D~p--nP-k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf 367 (447)
T KOG4497|consen 297 -EQQMTPVKVHKLK---PPT-DFP--NP-KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAF 367 (447)
T ss_pred -hhhhcceeeeccc---CCC-CCC--Cc-ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEE
Confidence 0000000000000 000 011 12 566778999999999999975 569999999877766554 56789999
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 001534 888 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947 (1058)
Q Consensus 888 ~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~ 947 (1058)
.|.| +...|+.+.....+++|......++.. .+..-.|..+.|.-+|..++-.+.|..
T Consensus 368 ~WdP-~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 368 EWDP-GRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EeCC-CCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 9999 777777777777899998766444443 334467999999999999999999874
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-16 Score=181.54 Aligned_cols=371 Identities=22% Similarity=0.382 Sum_probs=279.9
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCC-ceeeeeeeecCc-CCeEEEEE-ecCCCceEEEE-EcCCCcE
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-ELRQHLEIDAHV-GGVNDIAF-AHPNKQLCIVT-CGDDKMI 479 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~h~-~~v~~~~f-s~d~~~~~l~s-~~~d~~v 479 (1058)
...|...+.++.|.+++..++.++.|+.+.+|+...+. ... .+.++. ..+..+.+ ++++.. +++. +..|+.+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~ 136 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDGNS-ILLASSSLDGTV 136 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCcce-EEeccCCCCccE
Confidence 45689999999999999999999999999999999875 333 444433 36777777 777763 3444 4459999
Q ss_pred EEEEcCC-CceeEEeeCCCCCeEEEEecccCCccEEEEEeC-CCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEE
Q 001534 480 KVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1058)
Q Consensus 480 ~vwd~~~-~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~-d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1058)
.+||... ......+..|...|..++|++.. ..+++++. |+.+++|+.........+..|...+.+++|+|++..++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDG--KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCC--CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEE
Confidence 9999988 78888999999999999999655 57888875 99999999998778888888899999999999998444
Q ss_pred EE-ecCCCCCceEEEeeCCCCceeE-eecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCce-EEEEecCCCCCC
Q 001534 558 SC-GTSKEGESHLVEWNESEGAIKR-TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM-LTTVDADGGLPA 634 (1058)
Q Consensus 558 ~~-~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~ 634 (1058)
.+ + .++.+.+||...+.... .+.+|.. .. ...|+|++..+++++.|+.+++|+...... ...+. .+...
T Consensus 215 ~~~~----~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~ 286 (466)
T COG2319 215 ASGS----SDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS--GHSSS 286 (466)
T ss_pred EEec----CCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEe--cCCcc
Confidence 43 3 47889999998888877 6777776 33 338999998899999999999999987665 44442 33457
Q ss_pred cceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCC
Q 001534 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714 (1058)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1058)
+.++.|+|++..+++++.|+.+.+|+..+..... ...
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~------------------------------------------ 323 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS-SLT------------------------------------------ 323 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE-Eee------------------------------------------
Confidence 8999999988899889999899999876652111 110
Q ss_pred CCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEe-ecc
Q 001534 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL-ASN 793 (1058)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~-~~d 793 (1058)
...|...+..+.+.+++..++.+ ..|
T Consensus 324 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d 350 (466)
T COG2319 324 -----------------------------------------------------LKGHEGPVSSLSFSPDGSLLVSGGSDD 350 (466)
T ss_pred -----------------------------------------------------ecccCCceEEEEECCCCCEEEEeecCC
Confidence 00133456677773332455555 567
Q ss_pred ceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEE-Ee-CCeEEEEECCCc
Q 001534 794 AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS-AS-GGKVSLFNMMTF 871 (1058)
Q Consensus 794 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~-~s-dg~i~iwd~~~~ 871 (1058)
+.+.+|++.... ... .... ...+..+.+++ ...++. +. ++.+.+|+....
T Consensus 351 ~~~~~~~~~~~~----------------------~~~-~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 402 (466)
T COG2319 351 GTIRLWDLRTGK----------------------PLK-TLEG----HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTG 402 (466)
T ss_pred CcEEeeecCCCc----------------------eeE-EecC----CceEEEEEECC-CCCEEEEecCCCceEEEecccC
Confidence 788888765321 000 0111 22278899988 544443 34 899999999988
Q ss_pred eEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEccc
Q 001534 872 KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1058)
Q Consensus 872 ~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~ 913 (1058)
........+...+....+++ ++..+++++.++.+++|+..+
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 403 SLLRNLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred eeeeeccCCCCcEEEEEECC-CCcEEEEecCCCcEEEEeccC
Confidence 88777665447899999999 899999999999999999988
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.8e-19 Score=170.07 Aligned_cols=253 Identities=17% Similarity=0.242 Sum_probs=186.2
Q ss_pred cccccCCCcCeEEEEECC----C-CCEEEEEeCCCeEEEEEecCCCceeeeeee--ecCcCCeEEEEEecCCC--ceEEE
Q 001534 401 NALLNDAAISVNRCVWGP----D-GLMLGVAFSKHIVHLYTYNPTGELRQHLEI--DAHVGGVNDIAFAHPNK--QLCIV 471 (1058)
Q Consensus 401 ~~~~~~h~~~v~~~~~sp----d-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~h~~~v~~~~fs~d~~--~~~l~ 471 (1058)
..+..+|+.+|..++|++ + -+.+|+++. ..+.+|.......++..... ..|......++|+-|.. .+++|
T Consensus 31 ~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la 109 (385)
T KOG1034|consen 31 NHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLA 109 (385)
T ss_pred eehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEE
Confidence 334667999999999986 2 235555544 47889988765433322222 24677788899987644 35899
Q ss_pred EEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEe---cCCCCcEEEEE
Q 001534 472 TCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNWCTMMA 548 (1058)
Q Consensus 472 s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~---~~~~~~v~~~~ 548 (1058)
.|+.-|.|+|.|+.++++...+.+|...|+.+.++|... ++++++|.|..||+|++++..++..+ .+|...|.++.
T Consensus 110 ~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~-qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD 188 (385)
T KOG1034|consen 110 AGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP-QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVD 188 (385)
T ss_pred eecceeEEEEEecchhhhccceeccCccchhhhcCCCCC-cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEE
Confidence 999999999999999999999999999999999998754 79999999999999999999988875 55788999999
Q ss_pred EcCCCCEEEEEecCCCCCceEEEeeCCCCceeEee----------------------------cCCCCCceeEEEEcCCC
Q 001534 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY----------------------------SGFRKRSLGVVQFDTTR 600 (1058)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~----------------------------~~~~~~~v~~~~~~~~~ 600 (1058)
|+++|.++++++. |..|++|++...+....+ .-|.. .|.|+.|- |
T Consensus 189 ~~~~gd~i~ScGm----Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrn-yVDCvrw~--g 261 (385)
T KOG1034|consen 189 FSLDGDRIASCGM----DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRN-YVDCVRWF--G 261 (385)
T ss_pred EcCCCCeeeccCC----cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccc-hHHHHHHH--h
Confidence 9999999999986 888999999743211100 11111 34444443 5
Q ss_pred CEEEEEeCCCeEEEEEC-CCCceE-------------EEEecCCCCCCcce--EEEeCCCCEEEEEECCCcEEEEECCCC
Q 001534 601 NRFLAAGDEFQIKFWDM-DNMNML-------------TTVDADGGLPASPR--LRFNKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 601 ~~l~~~~~dg~i~iwd~-~~~~~~-------------~~~~~~~~~~~v~~--~~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
+++++-+-++.|..|.. +-++.+ ..+..+. ..|.- .+|.|-++.||.|...|.|.+||+...
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~--c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM--CDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCc--cceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence 78899888889999987 222221 1122221 12333 455677889999999999999999766
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=176.06 Aligned_cols=311 Identities=12% Similarity=0.116 Sum_probs=223.9
Q ss_pred EcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCC----ceEEecCCCCcEEEEEEcCCC-CEEE
Q 001534 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG----SRVDYDAPGNWCTMMAYSADG-TRLF 557 (1058)
Q Consensus 483 d~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~~-~~l~ 557 (1058)
|+.+-......+.+.++|++++|+|..+.+++++|..-|.|-+||+.+.+ ....+..|..+|.++.|+|.. ..++
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence 33344444556678899999999999988899999999999999996433 355778899999999999954 4566
Q ss_pred EEecCCCCCceEEEeeCCCCceeEeecC--CCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCce-EEEEecCCCCCC
Q 001534 558 SCGTSKEGESHLVEWNESEGAIKRTYSG--FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM-LTTVDADGGLPA 634 (1058)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~ 634 (1058)
+.+. ||+|++-|+..+..-..+.. ... .+..+.|+.+...+++++.=|.+.+||.+++.. ...+..|.. .
T Consensus 252 ssSy----DGtiR~~D~~~~i~e~v~s~~~d~~-~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k--K 324 (498)
T KOG4328|consen 252 SSSY----DGTIRLQDFEGNISEEVLSLDTDNI-WFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK--K 324 (498)
T ss_pred eecc----CceeeeeeecchhhHHHhhcCccce-eeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc--c
Confidence 6664 89999999987643333322 222 567788888888899998888999999997654 555555544 7
Q ss_pred cceEEEeC-CCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCC
Q 001534 635 SPRLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 713 (1058)
Q Consensus 635 v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1058)
|..++++| ...+||+++.|++.+|||+..-. +....
T Consensus 325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~-------~K~sp------------------------------------ 361 (498)
T KOG4328|consen 325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLR-------GKASP------------------------------------ 361 (498)
T ss_pred cceeecCCCCchheeecccCcceeeeehhhhc-------CCCCc------------------------------------
Confidence 99999999 56789999999999999986431 10000
Q ss_pred CCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeecc
Q 001534 714 DRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN 793 (1058)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 793 (1058)
.+.. -.|...|.+..|||++-.|++.+.|
T Consensus 362 ----------------------------------~lst-----------------~~HrrsV~sAyFSPs~gtl~TT~~D 390 (498)
T KOG4328|consen 362 ----------------------------------FLST-----------------LPHRRSVNSAYFSPSGGTLLTTCQD 390 (498)
T ss_pred ----------------------------------ceec-----------------ccccceeeeeEEcCCCCceEeeccC
Confidence 0001 1288899999999999999999999
Q ss_pred ceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEECCCce
Q 001534 794 AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK 872 (1058)
Q Consensus 794 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~ 872 (1058)
..|+|||.. .+.-|+...+.+......+ .| -...-.+|.||..++++|. -..|-|||-..++
T Consensus 391 ~~IRv~dss--------------~~sa~~~p~~~I~Hn~~t~-Rw--lT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 391 NEIRVFDSS--------------CISAKDEPLGTIPHNNRTG-RW--LTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred CceEEeecc--------------cccccCCccceeeccCccc-cc--ccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 999999852 0112233333332221111 01 1223467999999999998 6779999999888
Q ss_pred EEEEecCCCC-CeEE-EEEeCCCCC-EEEEEeCCCeEEEEEcc
Q 001534 873 VMTMFMSPPP-AATF-LAFHPQDNN-IIAIGMEDSSVQIYNVR 912 (1058)
Q Consensus 873 ~~~~~~~~~~-~i~~-l~~s~~~~~-~lasg~~dg~I~iwd~~ 912 (1058)
.+..+..+.. .|.+ ..|+| -+. ++|-++..|.|+||--+
T Consensus 454 ~v~el~~P~~~tI~~vn~~HP-~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 454 MVCELHDPESSTIPSVNEFHP-MRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred EeeeccCccccccccceeecc-cccceeccCCccceEEEEecC
Confidence 8888765544 4555 48999 555 66666677899988644
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9e-19 Score=173.20 Aligned_cols=243 Identities=14% Similarity=0.177 Sum_probs=187.3
Q ss_pred CCCEEEEE---eCCCeEEEEEe-cCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCC-------
Q 001534 419 DGLMLGVA---FSKHIVHLYTY-NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG------- 487 (1058)
Q Consensus 419 d~~~l~~~---~~d~~i~vwd~-~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~------- 487 (1058)
+.++||+. +..|...+--+ ++|+.-.....+.||+++|..++|+|-+.+ .+|+||.|.+|.||.+-.+
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~vW~IPe~~l~~~lt 121 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVMVWQIPENGLTRDLT 121 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEEEEECCCcccccCcc
Confidence 45566553 22333333333 233333334456799999999999998887 8999999999999998654
Q ss_pred ceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCc
Q 001534 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1058)
Q Consensus 488 ~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1058)
+++..|.+|+..|.-++|+|... +.|++++.|.+|.+|++.+++....+. |..-|+++.|+.||.++++.+ .|.
T Consensus 122 epvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttc----kDK 195 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTC----KDK 195 (472)
T ss_pred cceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeec----ccc
Confidence 45678899999999999999765 899999999999999999999999988 999999999999999999987 478
Q ss_pred eEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEe---CCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCC
Q 001534 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1058)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1058)
.|++||.++++.+..-.+|.+..-..+.|-.++..+-+|- .+..+-+||..+.+.-..+..-.....|.---|.+|.
T Consensus 196 kvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt 275 (472)
T KOG0303|consen 196 KVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDT 275 (472)
T ss_pred eeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCC
Confidence 8999999999999998888876666777888888444443 6788999998765433333222222345555677888
Q ss_pred CEEEEEE-CCCcEEEEECCCCceee
Q 001534 645 SLLAVTT-SDNGIKILANSDGVRLL 668 (1058)
Q Consensus 645 ~~l~~~~-~dg~i~iw~~~~~~~~~ 668 (1058)
+.++.++ .|+.||.|.+.+....+
T Consensus 276 ~ivYl~GKGD~~IRYyEit~d~P~~ 300 (472)
T KOG0303|consen 276 SIVYLCGKGDSSIRYFEITNEPPFV 300 (472)
T ss_pred CEEEEEecCCcceEEEEecCCCcee
Confidence 8876655 59999999998764333
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=179.17 Aligned_cols=263 Identities=11% Similarity=0.121 Sum_probs=190.7
Q ss_pred CCeeEEEEecC-------CCeEEEEEeCCCcEEEEEccCccccccCcceeeccccc-c-----cccccccccCCCcCeEE
Q 001534 347 SNVMSMDFHPQ-------QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA-S-----MPLQNALLNDAAISVNR 413 (1058)
Q Consensus 347 ~~V~~~~fspd-------g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~h~~~v~~ 413 (1058)
....|++|... | +++|.|+.|..|.|||+.-...+. +..-+-.. + .......-.+|+..|.+
T Consensus 174 afPLC~ewld~~~~~~~~g-NyvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~ 248 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAG-NYVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLA 248 (463)
T ss_pred CcchhhhhhhcCCCCCCCc-ceEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHH
Confidence 34456666532 3 389999999999999986322111 00000000 0 00011224579999999
Q ss_pred EEECCCC-CEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEE
Q 001534 414 CVWGPDG-LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1058)
Q Consensus 414 ~~~spd~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 492 (1058)
++|+.+- ..||+||.|.+|++||+.++++.. .+..|.+.|.+++|+|.... +|++|+.|++|.+.|.+.......
T Consensus 249 Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~ 324 (463)
T KOG0270|consen 249 LSWNRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGK 324 (463)
T ss_pred HHhccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCc
Confidence 9999864 578999999999999999998776 66789999999999998877 899999999999999985332222
Q ss_pred eeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCC-CceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEE
Q 001534 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1058)
Q Consensus 493 l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1058)
.-...+.|..++|.+... ..++++..||+++-+|++.. ++...+..|...|.++++++.-..+++.+. .++.+.+
T Consensus 325 ~wk~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s---~d~~Vkl 400 (463)
T KOG0270|consen 325 EWKFDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS---TDKVVKL 400 (463)
T ss_pred eEEeccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc---ccceEEE
Confidence 122467899999998654 78899999999999999987 677899999999999999987766554432 5889999
Q ss_pred eeCCCCce--eEeecCCCCCceeEEEEcCCCCE-EEEEeCCCeEEEEECCCCceE
Q 001534 572 WNESEGAI--KRTYSGFRKRSLGVVQFDTTRNR-FLAAGDEFQIKFWDMDNMNML 623 (1058)
Q Consensus 572 wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~ 623 (1058)
|++..... +..-.-.-+ ...|.++.|+-.+ ++.||..+.++|||+.+...+
T Consensus 401 w~~~~~~~~~v~~~~~~~~-rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 401 WKFDVDSPKSVKEHSFKLG-RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EeecCCCCccccccccccc-ceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 99874433 211111111 4567777777655 455778888999999876544
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=176.83 Aligned_cols=281 Identities=12% Similarity=0.148 Sum_probs=210.7
Q ss_pred CCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCC-EEEEEeCCCeEEEEEecCCCc-eee
Q 001534 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGE-LRQ 445 (1058)
Q Consensus 368 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~-~l~~~~~d~~i~vwd~~~~~~-~~~ 445 (1058)
...++|||+...+....+. -......+.++.|+.... .+++.+.|..+++|.-..... +..
T Consensus 11 gd~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~ 73 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPR 73 (673)
T ss_pred CCceEEeecccccCccccc-----------------cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccce
Confidence 4579999998755432110 011222489999988765 223345688899997554311 111
Q ss_pred eeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEE
Q 001534 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1058)
Q Consensus 446 ~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~ 525 (1058)
...+.+. .-.|++...... ++++|+..+.|+|||++...+.+.+++|...|+++.++... .+|++++..|.|.+
T Consensus 74 ~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGdiii 147 (673)
T KOG4378|consen 74 VRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD--EYIASVSDGGDIII 147 (673)
T ss_pred eeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc--ceeEEeccCCcEEE
Confidence 1122222 233444443344 89999999999999999888888999999999999998654 79999999999999
Q ss_pred EeCCCCCceEEecCC-CCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCC-EE
Q 001534 526 WLYDYLGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RF 603 (1058)
Q Consensus 526 wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l 603 (1058)
..+.++.....+... +..|.-+.|+|..+++++... .+|.|.+||.....++..+...+..+...+||+|... .|
T Consensus 148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred EecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence 999988887777766 446669999999988876553 3889999999988887777655555889999999765 56
Q ss_pred EEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCccc
Q 001534 604 LAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMD 677 (1058)
Q Consensus 604 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 677 (1058)
++.|.|..|.+||..+.+....+... .+...++|+++|.+|+.|+..|.|..||+...+..+.++..|...
T Consensus 225 vsVG~Dkki~~yD~~s~~s~~~l~y~---~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s 295 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQASTDRLTYS---HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS 295 (673)
T ss_pred EEecccceEEEeecccccccceeeec---CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccc
Confidence 67899999999999988877777543 367899999999999999999999999998776666666555443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.7e-19 Score=172.03 Aligned_cols=248 Identities=17% Similarity=0.260 Sum_probs=193.0
Q ss_pred ccCCCcCeEEEEECCCCC--EEEEEeCCCeEEEEEecCC-------------CceeeeeeeecCcCCeEEEEEecCCCce
Q 001534 404 LNDAAISVNRCVWGPDGL--MLGVAFSKHIVHLYTYNPT-------------GELRQHLEIDAHVGGVNDIAFAHPNKQL 468 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~--~l~~~~~d~~i~vwd~~~~-------------~~~~~~~~~~~h~~~v~~~~fs~d~~~~ 468 (1058)
..+|.+.++-+.-++-++ +.|+=+..|.|.||++... ...+...++.+|...-..++|||-...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g- 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG- 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-
Confidence 456888888888888554 5555578999999998531 223455678899999999999994333
Q ss_pred EEEEEcCCCcEEEEEcCCCcee---EEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCc--eEEecCCCCc
Q 001534 469 CIVTCGDDKMIKVWDVVAGRKQ---YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNW 543 (1058)
Q Consensus 469 ~l~s~~~d~~v~vwd~~~~~~~---~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~--~~~~~~~~~~ 543 (1058)
.|+||.--+.|++|...+|... ..|.+|+..|..++|+|..+ ..|++||.||+|+|||++.+.. ....+.|.+.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 5889988899999999888654 35678999999999999877 6999999999999999998732 3345788999
Q ss_pred EEEEEEcCCCCEEEEEecCCCCCceEEEeeCCC---CceeEeecCCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEECCC
Q 001534 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDN 619 (1058)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 619 (1058)
|+.+.|+.+..+|++|+ .+|++.|||+++ ++++..|+.|.. +|+++.|+|.. ..++++|.|.+|.+||+.-
T Consensus 305 VNVISWnr~~~lLasG~----DdGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGG----DDGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeeEEccCCcceeeecC----CCceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 99999999988888886 389999999985 678899999988 99999999965 4677788999999999863
Q ss_pred Cce----------------EEEEecCCCCCCcceEEEeCC-CCEEEEEECCCcEEEE
Q 001534 620 MNM----------------LTTVDADGGLPASPRLRFNKE-GSLLAVTTSDNGIKIL 659 (1058)
Q Consensus 620 ~~~----------------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw 659 (1058)
..- .+.+-.|.+...+..+.|++. ..++++.+.|| +.||
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 211 112233444456888999984 44677777775 3444
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-19 Score=204.20 Aligned_cols=301 Identities=12% Similarity=0.142 Sum_probs=224.6
Q ss_pred cccccCCCchhhhhhcccCCcceeeecCCCCCcceecCCccc----cceeEeecCCCCeeEEEEecCCCe---EEEEEeC
Q 001534 295 GMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLT----KTVVRTLNQGSNVMSMDFHPQQQT---ILLVGTN 367 (1058)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~V~~~~fspdg~~---lla~g~~ 367 (1058)
.++|+......++.....+.+ +..|+.+ ..+-++..|... .+.+-.+......+.++|++.|.. ++|.|..
T Consensus 11 ~~awSp~~~~~laagt~aq~~-D~sfst~-~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQF-DASFSTS-ASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred eEEecCCCchhhHHHhhhhcc-ccccccc-cccceeeecccCccccccccccccccccceeeeecccCCCccceeecccc
Confidence 456665553344444333332 3334332 244555554332 245666677889999999998876 6899999
Q ss_pred CCcEEEEEccCc---cccccCcceeecccccccccccccccCCCcCeEEEEECCCCC-EEEEEeCCCeEEEEEecCCCce
Q 001534 368 VGDISLWEVGSR---ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGEL 443 (1058)
Q Consensus 368 dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~-~l~~~~~d~~i~vwd~~~~~~~ 443 (1058)
||.|.+||...- .... .......|++.|..+.|++... .||+|+.||.|.|||+..-+..
T Consensus 89 dG~I~ly~p~~~~~~~~~~----------------~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP 152 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEE----------------VLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP 152 (1049)
T ss_pred CCceEEecchhhccCcchH----------------HHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC
Confidence 999999998762 1111 0112567999999999999655 9999999999999999875443
Q ss_pred eeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCC--CeEEEEecccCCccEEEEEeCC-
Q 001534 444 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA--PVYSVCPHHKESIQFIFSTAID- 520 (1058)
Q Consensus 444 ~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~--~v~~~~~~~~~~~~~l~s~s~d- 520 (1058)
.... -....+.|.+++|+..-.+ +|++++.+|.+.|||++..+++-.+..+.+ .+..++|+|+... .+++++.|
T Consensus 153 ~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT-ql~~As~dd 229 (1049)
T KOG0307|consen 153 FTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT-QLLVASGDD 229 (1049)
T ss_pred CCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce-eeeeecCCC
Confidence 3111 1224568999999988776 899999999999999999988887776654 5778999998664 45555544
Q ss_pred --CeEEEEeCCCCCc-eEEecCCCCcEEEEEEcCCC-CEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEE
Q 001534 521 --GKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596 (1058)
Q Consensus 521 --~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~ 596 (1058)
-.|.+||++.... ...+..|...|.++.|++.+ .++++++ .|+.|.+|+.++++.+..+....+ .+..+.|
T Consensus 230 ~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg----kD~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w 304 (1049)
T KOG0307|consen 230 SAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG----KDNRIICWNPNTGEVLGELPAQGN-WCFDVQW 304 (1049)
T ss_pred CCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc----CCCCeeEecCCCceEeeecCCCCc-ceeeeee
Confidence 3599999987554 44668999999999999977 6777776 488899999999999999988555 8999999
Q ss_pred cCCCC-EEEEEeCCCeEEEEECCCCc
Q 001534 597 DTTRN-RFLAAGDEFQIKFWDMDNMN 621 (1058)
Q Consensus 597 ~~~~~-~l~~~~~dg~i~iwd~~~~~ 621 (1058)
+|... .+++++-||.|.|+.+.+..
T Consensus 305 ~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 305 CPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cCCCcchhhhheeccceeeeeeecCC
Confidence 99876 66778899999999987654
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=176.44 Aligned_cols=294 Identities=12% Similarity=0.119 Sum_probs=215.5
Q ss_pred ecCCCCCcceecCCccccceeEee-cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccc
Q 001534 320 FAGVAHTPNVYSQDDLTKTVVRTL-NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMP 398 (1058)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 398 (1058)
+...|..+.+|.....+......- ...-.+.++.|+......+|+-+.|..|++|.-... .. +++..
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~--~Vp~~-------- 74 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TP--EVPRV-------- 74 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC--CC--cccee--------
Confidence 344455666666555443322111 123349999999887423344456778888865432 11 11100
Q ss_pred cccccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCc
Q 001534 399 LQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1058)
Q Consensus 399 ~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~ 478 (1058)
..+.+ ..-.|++......++++|+..+.|+|||++...+.+ .+.+|...|+++.++-... +|++++..|.
T Consensus 75 ---~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr---~lkdh~stvt~v~YN~~De--yiAsvs~gGd 144 (673)
T KOG4378|consen 75 ---RKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR---FLKDHQSTVTYVDYNNTDE--YIASVSDGGD 144 (673)
T ss_pred ---ecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh---hccCCcceeEEEEecCCcc--eeEEeccCCc
Confidence 00122 233444444455899999999999999999644333 7789999999999998888 8999999999
Q ss_pred EEEEEcCCCceeEEeeCCCC-CeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEe-cCCCCcEEEEEEcCCCCE-
Q 001534 479 IKVWDVVAGRKQYTFEGHEA-PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTR- 555 (1058)
Q Consensus 479 v~vwd~~~~~~~~~l~~~~~-~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~- 555 (1058)
|.|..+.++.....|....+ .|.-+.+++... .+|.+++.+|.|.+||+....+...+ ..|..+...++|+|....
T Consensus 145 iiih~~~t~~~tt~f~~~sgqsvRll~ys~skr-~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 145 IIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKR-FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred EEEEecccCccccceecCCCCeEEEeecccccc-eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence 99999999988888875434 455788888654 68889999999999999887777654 567889999999996654
Q ss_pred EEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEecCCCCCC
Q 001534 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPA 634 (1058)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~ 634 (1058)
+++.+. |..|.+||.+.......+...+ +...++|+++|.+|++|...|.|..||++. ..++..+..|.. .
T Consensus 224 ~vsVG~----Dkki~~yD~~s~~s~~~l~y~~--Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~--s 295 (673)
T KOG4378|consen 224 LVSVGY----DKKINIYDIRSQASTDRLTYSH--PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA--S 295 (673)
T ss_pred EEEecc----cceEEEeecccccccceeeecC--CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc--c
Confidence 556664 7889999999777766665543 788999999999999999999999999986 456777777655 6
Q ss_pred cceEEEeCCC
Q 001534 635 SPRLRFNKEG 644 (1058)
Q Consensus 635 v~~~~~s~~~ 644 (1058)
|++++|-|..
T Consensus 296 Vt~vafq~s~ 305 (673)
T KOG4378|consen 296 VTRVAFQPSP 305 (673)
T ss_pred eeEEEeeecc
Confidence 9999998865
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-17 Score=171.92 Aligned_cols=451 Identities=13% Similarity=0.166 Sum_probs=285.7
Q ss_pred CCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCe-EEEEEe-------cCCCceEEEEEcCCC
Q 001534 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGV-NDIAFA-------HPNKQLCIVTCGDDK 477 (1058)
Q Consensus 406 ~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v-~~~~fs-------~d~~~~~l~s~~~d~ 477 (1058)
.|...|.|+.|+.+...+.+++.+..+.-||+.+... ... .+ ....| +.+..- .... .++.++.||
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~-~~--p~df~pt~~h~~~rs~~~g~~~d--~~~i~s~DG 85 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVA-KL--PDDFVPTDMHLGGRSSGGGKGSD--TLLICSNDG 85 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhh-hC--CcccCCccccccccccCCCCCcc--eEEEEcCCc
Confidence 4677788999999888887776666666666655322 111 00 11111 111110 1122 688888999
Q ss_pred cEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEE
Q 001534 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1058)
Q Consensus 478 ~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1058)
.+.+.+ +.++..+.+..|.+.+.+-.|+++ |.-|+++++||.|++|.- ++-...++......|+|++|.|+.+.++
T Consensus 86 kf~il~-k~~rVE~sv~AH~~A~~~gRW~~d--GtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl 161 (737)
T KOG1524|consen 86 RFVILN-KSARVERSISAHAAAISSGRWSPD--GAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIV 161 (737)
T ss_pred eEEEec-ccchhhhhhhhhhhhhhhcccCCC--CceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceE
Confidence 999998 788888899999999999999964 577999999999999973 3333444555677999999999999888
Q ss_pred EEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcce
Q 001534 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1058)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1058)
.|. .+.+.+=.+.....+-..+.|.+ -|.++.|++..+.+++||+|-..++||.. |..+..-..|. .+|++
T Consensus 162 ~c~-----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~e--y~ITS 232 (737)
T KOG1524|consen 162 FCQ-----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEE--YAITS 232 (737)
T ss_pred Eec-----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeeccc-CcccccCChhc--cceee
Confidence 774 45688877777777778899888 89999999999999999999999999976 45555544444 48999
Q ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCC
Q 001534 638 LRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGP 717 (1058)
Q Consensus 638 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1058)
++|+|+ +.++.++.. ++|+=.
T Consensus 233 va~npd-~~~~v~S~n-t~R~~~--------------------------------------------------------- 253 (737)
T KOG1524|consen 233 VAFNPE-KDYLLWSYN-TARFSS--------------------------------------------------------- 253 (737)
T ss_pred eeeccc-cceeeeeee-eeeecC---------------------------------------------------------
Confidence 999999 556665543 333100
Q ss_pred CCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEE
Q 001534 718 PAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHK 797 (1058)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 797 (1058)
...+.|..++||+||.+++.++..|.+.
T Consensus 254 ----------------------------------------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 254 ----------------------------------------------------PRVGSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred ----------------------------------------------------CCccceEEEEEcCCCceeeccccCceEE
Confidence 1345788999999999999999998776
Q ss_pred EE-EcccCCCCCCCccc--ccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEeCCeEEEEECCCceEE
Q 001534 798 LW-KWQRTERNPSGKAT--ANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVM 874 (1058)
Q Consensus 798 vw-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~sdg~i~iwd~~~~~~~ 874 (1058)
+= -++..-....++.. ....+.+-|+.++..-. +.. ..++...++ .-.+|+++....|++|.-......
T Consensus 282 ~A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d~--LE~----p~rv~k~sL--~Y~hLvvaTs~qvyiys~knwntp 353 (737)
T KOG1524|consen 282 VAYAIEQQLVSGNLKATSKSRKSITVRDVATGVQDI--LEF----PQRVVKFSL--GYGHLVVATSLQVYIYSEKNWNTP 353 (737)
T ss_pred EeeeehhhhhhccceeEeeccceEEeehhhhhHHHH--hhC----ccceeeeee--ceeEEEEEeccEEEEEecCCccCc
Confidence 52 22222111222221 12235566666665432 222 444554443 445666666666777665432221
Q ss_pred EEecCCCCC------------------eEE------EEEeCC----------------CCCEEEEE--eCCCeEEEEEc-
Q 001534 875 TMFMSPPPA------------------ATF------LAFHPQ----------------DNNIIAIG--MEDSSVQIYNV- 911 (1058)
Q Consensus 875 ~~~~~~~~~------------------i~~------l~~s~~----------------~~~~lasg--~~dg~I~iwd~- 911 (1058)
..+.+.... |+- +.++|. ....|+.- .+...+.+||.
T Consensus 354 iiidgre~tr~lieq~ek~fli~dgsSi~lytyegR~~~np~~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~i 433 (737)
T KOG1524|consen 354 IIIDGREDTRNLIEQGEKYFLILDGSSIWLYTYEGRLHLNPRYPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLI 433 (737)
T ss_pred EEEeccccchhHhhhhhhheEEecCcEEEEEEecCceecCCCCCCcccccccceeeecccceEEeecCCCCeeEEeccCC
Confidence 111111100 000 001110 11123321 12234667777
Q ss_pred ccceeEEE--EeCCCCCeEEEEE----cCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCC
Q 001534 912 RVDEVKTK--LKGHQNRITGLAF----SPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 985 (1058)
Q Consensus 912 ~~~~~~~~--l~~h~~~v~~l~~----spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d 985 (1058)
.+|+.... +-.|...|..++. .++.+.++.-+..+.++|=.+.+...-. ..+. -| ..|..++|+..
T Consensus 434 stgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee-~I~K--iG-----TmVhtLawndt 505 (737)
T KOG1524|consen 434 STGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEE-EIYK--IG-----TMVHTLAWNDT 505 (737)
T ss_pred CCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchh-hhhh--hh-----hhhhhhhhccc
Confidence 56654431 1235566666665 3466778888888888887776532211 1111 11 23678999988
Q ss_pred CcEEEEEeCCeEEEEeC
Q 001534 986 QTHLLVVHESQISVYDS 1002 (1058)
Q Consensus 986 ~~~l~~~~d~~i~vwd~ 1002 (1058)
-+.|+--.|+++.||-.
T Consensus 506 tNiLcglqDt~fsVWy~ 522 (737)
T KOG1524|consen 506 TNILCGLQDTCFSVWYY 522 (737)
T ss_pred cceeeeeccceEEEEEc
Confidence 88666559999999998
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=170.53 Aligned_cols=234 Identities=15% Similarity=0.241 Sum_probs=185.5
Q ss_pred cccCCCcCeEEEEECC-CCCEEEEEeCCCeEEEEEecCCCc----eeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCC
Q 001534 403 LLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1058)
Q Consensus 403 ~~~~h~~~v~~~~~sp-d~~~l~~~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~ 477 (1058)
.+.||+++|..++|+| +...||+||.|.+|.||.+..+.. ......|.+|...|--++|+|...+ +|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 3789999999999999 677899999999999999976543 2334578899999999999999887 889999999
Q ss_pred cEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCC-cEEEEEEcCCCCEE
Q 001534 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRL 556 (1058)
Q Consensus 478 ~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l 556 (1058)
+|.+||+.+|+.+.++. |...|+++.|+ .+|.++++++.|..||+||.++++....-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999998887 99999999998 5668999999999999999999888887766654 556677888998 7
Q ss_pred EEEecCCCCCceEEEeeCCCCc---eeEeecCCCCCceeEEEEcCCCCEEEEEe-CCCeEEEEECCCCce-EEEEecCCC
Q 001534 557 FSCGTSKEGESHLVEWNESEGA---IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNM-LTTVDADGG 631 (1058)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~ 631 (1058)
++.+.++-.+.++-+||..+-+ ....+.... .|.---|.++.+.++.+| .|+.|+-|.+....+ +..+.....
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn--Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSN--GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccCC--ceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 7777777778999999976533 223333332 465566889988888766 899999999987653 333333333
Q ss_pred CCCcceEEEeCC
Q 001534 632 LPASPRLRFNKE 643 (1058)
Q Consensus 632 ~~~v~~~~~s~~ 643 (1058)
..+-..+.|-|.
T Consensus 309 ~epQRG~g~mPK 320 (472)
T KOG0303|consen 309 KEPQRGMGFMPK 320 (472)
T ss_pred CCcccccccccc
Confidence 334456667664
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-17 Score=157.57 Aligned_cols=290 Identities=15% Similarity=0.261 Sum_probs=211.5
Q ss_pred eeEeecCCCCeeEEEEe--cCCCeEEEEEe----CCCcEEEEEcc--CccccccCcceeecccccccccccccccCCCcC
Q 001534 339 VVRTLNQGSNVMSMDFH--PQQQTILLVGT----NVGDISLWEVG--SRERLAHKPFKVWDISAASMPLQNALLNDAAIS 410 (1058)
Q Consensus 339 ~~~~~~h~~~V~~~~fs--pdg~~lla~g~----~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 410 (1058)
-++++...-.+.++.|| |+.+..||.|+ ..+.|.|-.+. +++.+... -..|..+
T Consensus 37 eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a------------------~fd~~YP 98 (364)
T KOG0290|consen 37 EIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA------------------NFDHPYP 98 (364)
T ss_pred eEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccC------------------CCCCCCC
Confidence 35666667789999999 66667789997 34566666554 33333221 1358999
Q ss_pred eEEEEECCCCC-----EEEEEeCCCeEEEEEecCCC-ceeeeee-----eecCcCCeEEEEEecCCCceEEEEEcCCCcE
Q 001534 411 VNRCVWGPDGL-----MLGVAFSKHIVHLYTYNPTG-ELRQHLE-----IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1058)
Q Consensus 411 v~~~~~spd~~-----~l~~~~~d~~i~vwd~~~~~-~~~~~~~-----~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v 479 (1058)
++.+.|.|+.. +||+++ ..+|+|.+...+ .+..... -..+..++++..|+.-..+ ++.++|-|.+.
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTC 175 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTC 175 (364)
T ss_pred ccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeE
Confidence 99999999864 565543 369999987421 1211111 2246679999999987776 89999999999
Q ss_pred EEEEcCCCce---eEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceE-EecCC--CCcEEEEEEcCC-
Q 001534 480 KVWDVVAGRK---QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAP--GNWCTMMAYSAD- 552 (1058)
Q Consensus 480 ~vwd~~~~~~---~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~-~~~~~--~~~v~~~~~s~~- 552 (1058)
.|||+++|.. ...+-.|...|..++|... ..+.+++.+.||.+|+||++..+-.. .++.. ..+...++|++.
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD 254 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD 254 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEeccC-ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence 9999999743 5567789999999999863 44799999999999999999765433 23322 457888999874
Q ss_pred CCEEEEEecCCCCCceEEEeeCCC-CceeEeecCCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEECCCCce------EE
Q 001534 553 GTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNM------LT 624 (1058)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~------~~ 624 (1058)
-+++++... ....|.+.|++. ..++..+.+|.. .|+.++|.|.. ..++++|+|..+.+||+...-. +.
T Consensus 255 pnymATf~~---dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 255 PNYMATFAM---DSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred chHHhhhhc---CCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 456666654 356699999986 457889999988 89999999965 5788899999999999975322 12
Q ss_pred EEecCCCCCCcceEEEeC-CCCEEEEEECCCcEEE
Q 001534 625 TVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 658 (1058)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 658 (1058)
.+. ....|+.+.|++ .+.+++.+... .+.+
T Consensus 331 ay~---a~~EVNqi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 331 AYT---AGGEVNQIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred hhh---ccceeeeeeecccCCCEEEEEecC-eeeE
Confidence 222 234689999996 67788777653 4444
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-16 Score=171.11 Aligned_cols=563 Identities=12% Similarity=0.119 Sum_probs=317.7
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCC------C
Q 001534 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD------G 420 (1058)
Q Consensus 347 ~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd------~ 420 (1058)
..-.++.|+|.| ++|.|+ ...|.|-|..+-+.++. +..|...|+.+.|.|- +
T Consensus 16 sN~~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ll 73 (1062)
T KOG1912|consen 16 SNRNAADWSPSG--LIAYGS-HSLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDLL 73 (1062)
T ss_pred ccccccccCccc--eEEEec-CceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhcc
Confidence 446789999999 678776 46788999988887764 5668999999999872 1
Q ss_pred ------CEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecC---CCceEEEEEcCCCcEEEEEcCCCceeE
Q 001534 421 ------LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP---NKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1058)
Q Consensus 421 ------~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d---~~~~~l~s~~~d~~v~vwd~~~~~~~~ 491 (1058)
-.||++...|.|.+||...+..+. .+..|..++..+.|-+. .+. +|+.-....++.+|+..+|+...
T Consensus 74 S~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~W 149 (1062)
T KOG1912|consen 74 SPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKFW 149 (1062)
T ss_pred CccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCceee
Confidence 267788889999999999876555 67788999999999763 333 56666667899999999999998
Q ss_pred EeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCC------CCceEEecCC-CC----------------------
Q 001534 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY------LGSRVDYDAP-GN---------------------- 542 (1058)
Q Consensus 492 ~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~------~~~~~~~~~~-~~---------------------- 542 (1058)
..........|+.+.|-... .+..-+..|.+.+-+.-. .+..+.+... ..
T Consensus 150 k~~ys~~iLs~f~~DPfd~r-h~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~ 228 (1062)
T KOG1912|consen 150 KYDYSHEILSCFRVDPFDSR-HFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAY 228 (1062)
T ss_pred ccccCCcceeeeeeCCCCcc-eEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchh
Confidence 88776777788888876554 444444455555554321 1111111111 00
Q ss_pred ---cEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCC--EEEEEeCCCeEEEEEC
Q 001534 543 ---WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN--RFLAAGDEFQIKFWDM 617 (1058)
Q Consensus 543 ---~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~ 617 (1058)
....++|+|.-+.++.... ...+.++|++-..++....-..+ .+.-+.+-|+++ .|++.-.||.+.+|-.
T Consensus 229 fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 229 FITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred HHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 1123567786555444443 45599999998887777665555 556677777664 6888889999999976
Q ss_pred CC----------------CceEEEEecCCCCCCcceEEEeCC-CCEEEEEECCCcEEEEECCCCceeeecccCCcccccC
Q 001534 618 DN----------------MNMLTTVDADGGLPASPRLRFNKE-GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (1058)
Q Consensus 618 ~~----------------~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 680 (1058)
+. ++....+...... .....+..|. ...++.--.+|.+.+|.+.++........+......
T Consensus 304 k~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~- 381 (1062)
T KOG1912|consen 304 KEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVL- 381 (1062)
T ss_pred eccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccc-
Confidence 54 2222222222221 1222333343 445555566788888988766221111111110000
Q ss_pred CCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccc
Q 001534 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1058)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~ 760 (1058)
.|...+..-.+ -...++-...|| +...+..
T Consensus 382 -----------pf~f~~~~~~v-------------------------------~k~~l~~LS~dg--------~h~sGs~ 411 (1062)
T KOG1912|consen 382 -----------PFDFNLSTKLV-------------------------------GKTSLISLSDDG--------SHSSGST 411 (1062)
T ss_pred -----------cccccCceeeh-------------------------------hhccccchhhcC--------CCCCCce
Confidence 01110000000 000001111111 0000000
Q ss_pred eeEEecCCCcCcCceEEEEEccC-------CceEEEeeccceEEEEEcccCCCCC-------------------------
Q 001534 761 IKALRLPDSIAASKVVRLIYTNS-------GLSLLALASNAVHKLWKWQRTERNP------------------------- 808 (1058)
Q Consensus 761 ~~~~~~~~~~~~~~i~~l~~s~~-------g~~l~~~~~dg~i~vw~~~~~~~~~------------------------- 808 (1058)
+.... .....+-..-.|. -..++.|.+.|+|.++|+.++....
T Consensus 412 ~~~~~-----p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsy 486 (1062)
T KOG1912|consen 412 CVRMR-----PMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSY 486 (1062)
T ss_pred eeecc-----cCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeee
Confidence 00000 0000000111111 1246788889999999998762110
Q ss_pred ----CCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEECCCceEEEEecCCCCC
Q 001534 809 ----SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPA 883 (1058)
Q Consensus 809 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~ 883 (1058)
+........+.+-|+.+|.-....-..... +.+|+.+..|..|+||+..- +.-+.+||+++..+++.....-.-
T Consensus 487 s~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~d-espI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~ 565 (1062)
T KOG1912|consen 487 SHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPD-ESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPL 565 (1062)
T ss_pred ccccccccceeeeEEEEEcccccccccccCCCCC-cCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCc
Confidence 001111123567788888755432111123 78999999999999999998 888999999887766555444455
Q ss_pred eEEEEEe-CCCC----------------CEEEEEeCCCeEEEEEcc-cceeEEE-------EeCCCCCeEEEEEcCCCCE
Q 001534 884 ATFLAFH-PQDN----------------NIIAIGMEDSSVQIYNVR-VDEVKTK-------LKGHQNRITGLAFSPTLNA 938 (1058)
Q Consensus 884 i~~l~~s-~~~~----------------~~lasg~~dg~I~iwd~~-~~~~~~~-------l~~h~~~v~~l~~spd~~~ 938 (1058)
|+.+.|+ | .- +..++.+.| .+++.+. .+..... .+.....+..++| .+..
T Consensus 566 it~leWsl~-~~~si~qk~ls~q~sms~n~vv~ds~e--s~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~ 640 (1062)
T KOG1912|consen 566 ITVLEWSLP-KHPSIKQKELSKQSSMSENLVVLDSVE--SRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDI 640 (1062)
T ss_pred EEEEeeccc-CCCCcccccchhhhhhhhceeeecccc--chheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCe
Confidence 8899998 3 21 122333322 2233221 1111111 1111112334566 4678
Q ss_pred EEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEEeCCeEEEEeC-CCCeeeEE
Q 001534 939 LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSV 1010 (1058)
Q Consensus 939 l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~~d~~i~vwd~-~~~~~~~~ 1010 (1058)
|+.|..+|.+.+||+...+... ......+. .......+-|....+++-....+-+||. .-..+..+
T Consensus 641 lv~GD~~GNl~~WDlg~R~SRg---~~d~p~~r---a~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si 707 (1062)
T KOG1912|consen 641 LVVGDVEGNLVVWDLGRRQSRG---VRDSPDPR---AHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI 707 (1062)
T ss_pred eEeecccCceeEEecccccccC---ccCCCCch---hhheecccCCCCceEEEEecCcceecccccceeeeee
Confidence 9999999999999986643221 11111111 1123334444433444445556777887 44444444
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-17 Score=165.63 Aligned_cols=151 Identities=15% Similarity=0.218 Sum_probs=131.1
Q ss_pred CCcCeEEEEECCCCC-EEEEEeCCCeEEEEEecCCC------ceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcE
Q 001534 407 AAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTG------ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1058)
Q Consensus 407 h~~~v~~~~~spd~~-~l~~~~~d~~i~vwd~~~~~------~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v 479 (1058)
...+|.++.|.+++. .||+|+.|..|++|-+..+. .+.....|..|...|+++.|+|+|+ +|++|+.+|.|
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D~g~v 89 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGDGGEV 89 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCCCceE
Confidence 346899999999877 99999999999999887542 3444557889999999999999999 99999999999
Q ss_pred EEEEcC--------C--------CceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCc
Q 001534 480 KVWDVV--------A--------GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW 543 (1058)
Q Consensus 480 ~vwd~~--------~--------~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~ 543 (1058)
.+|-.. + ....+.+.+|...|..++|+++ +.++++++-|+.+++||+..+.....+..|.+.
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d--~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y 167 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD--SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY 167 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC--CceeeeeeccceEEEEEeccceeEeeccccccc
Confidence 999654 2 1233567789999999999965 489999999999999999999999999999999
Q ss_pred EEEEEEcCCCCEEEEEec
Q 001534 544 CTMMAYSADGTRLFSCGT 561 (1058)
Q Consensus 544 v~~~~~s~~~~~l~~~~~ 561 (1058)
+..++|.|-++++++-+.
T Consensus 168 vqgvawDpl~qyv~s~s~ 185 (434)
T KOG1009|consen 168 VQGVAWDPLNQYVASKSS 185 (434)
T ss_pred cceeecchhhhhhhhhcc
Confidence 999999999999998875
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-17 Score=170.08 Aligned_cols=247 Identities=13% Similarity=0.154 Sum_probs=165.0
Q ss_pred cccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEE
Q 001534 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1058)
Q Consensus 403 ~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vw 482 (1058)
.+.||.+.|+|++|+.||.+|++|+.|-.+.|||.-..+.+..+ -.+|...|.++.|-|....-++++|..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 37899999999999999999999999999999999876655543 3589999999999997655589999999999999
Q ss_pred EcCC----------CceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceE----------EecCCCC
Q 001534 483 DVVA----------GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----------DYDAPGN 542 (1058)
Q Consensus 483 d~~~----------~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~----------~~~~~~~ 542 (1058)
|+.. ....+.+..|...|..++..|... +.+.++++||+|+-+|++...... .+...--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9974 233455667889999998776543 799999999999999998632211 1111122
Q ss_pred cEEEEEEcCCCCE-EEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 001534 543 WCTMMAYSADGTR-LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1058)
Q Consensus 543 ~v~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1058)
...+++++|...+ |++|+ .+...++||.+.. +..+.... . ..++|.. .++.|+-|....-+
T Consensus 202 elk~ltisp~rp~~laVGg----sdpfarLYD~Rr~--lks~~s~~---~--~~~~pp~-------~~~cv~yf~p~hlk 263 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGG----SDPFARLYDRRRV--LKSFRSDG---T--MNTCPPK-------DCRCVRYFSPGHLK 263 (758)
T ss_pred eeeeeeecCCCCceEEecC----CCchhhhhhhhhh--ccCCCCCc---c--ccCCCCc-------ccchhheecCcccc
Confidence 5678999997665 45554 3778999996421 11111110 0 0111100 11111111111000
Q ss_pred eEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecc
Q 001534 622 MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1058)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 671 (1058)
........ ....++.++|+|+|.-|++.-..-.|+++++..++.....+
T Consensus 264 n~~gn~~~-~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 264 NSQGNLDR-YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred Cccccccc-ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 00000000 00125678999999888777777799999998875555444
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-16 Score=164.62 Aligned_cols=207 Identities=15% Similarity=0.167 Sum_probs=159.8
Q ss_pred EEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 001534 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT 440 (1058)
Q Consensus 361 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~ 440 (1058)
.++.++.||.+.|-+-.. +... ....|.+.|.|-.|+|||.-|++++.||.|++|.-.+.
T Consensus 77 ~~~i~s~DGkf~il~k~~-rVE~-------------------sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM 136 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSA-RVER-------------------SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM 136 (737)
T ss_pred eEEEEcCCceEEEecccc-hhhh-------------------hhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch
Confidence 466678899998876443 2211 15679999999999999999999999999999996542
Q ss_pred CceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCC
Q 001534 441 GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID 520 (1058)
Q Consensus 441 ~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d 520 (1058)
++. ++.....+|.|++|.|+.+. .+.+. .+.+.|=.+.....+-..+.|.+-|.++.|++.. +++++|++|
T Consensus 137 --LRS--tl~Q~~~~v~c~~W~p~S~~-vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s--~lI~sgGED 207 (737)
T KOG1524|consen 137 --LRS--TVVQNEESIRCARWAPNSNS-IVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS--NIIASGGED 207 (737)
T ss_pred --HHH--HHhhcCceeEEEEECCCCCc-eEEec--CCeEEEeecccccceeEEeccCcEEEEeecCccc--cceeecCCc
Confidence 221 33446678999999999986 33333 4567777777777777889999999999999766 799999999
Q ss_pred CeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCC
Q 001534 521 GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1058)
Q Consensus 521 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1058)
-..++||-. +...+.-..|..+|++++|.|+ +.++.++ -++++ +.....+.|..++|++||
T Consensus 208 ~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S-----~nt~R------------~~~p~~GSifnlsWS~DG 268 (737)
T KOG1524|consen 208 FRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWS-----YNTAR------------FSSPRVGSIFNLSWSADG 268 (737)
T ss_pred eeEEeeccc-CcccccCChhccceeeeeeccc-cceeeee-----eeeee------------ecCCCccceEEEEEcCCC
Confidence 999999854 5666677778889999999999 5555554 22233 333344478999999999
Q ss_pred CEEEEEeCCCeEEEE
Q 001534 601 NRFLAAGDEFQIKFW 615 (1058)
Q Consensus 601 ~~l~~~~~dg~i~iw 615 (1058)
..+++|...|.+.+=
T Consensus 269 TQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 269 TQATCGTSTGQLIVA 283 (737)
T ss_pred ceeeccccCceEEEe
Confidence 999999998887653
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-17 Score=160.81 Aligned_cols=295 Identities=12% Similarity=0.135 Sum_probs=212.4
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcccccc-CcceeecccccccccccccccCCCcCeEEEEECCCCC
Q 001534 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH-KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1058)
Q Consensus 343 ~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~ 421 (1058)
+.|.+.|+++.||.+++ +||+|+.|..++||++...-.... +++. ..-..|.+.|.|++|....+
T Consensus 53 ~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~-------------~~~~~H~SNIF~L~F~~~N~ 118 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIG-------------VMEHPHRSNIFSLEFDLENR 118 (609)
T ss_pred hhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCce-------------eccCccccceEEEEEccCCe
Confidence 35899999999999997 899999999999999975322211 1111 11234668999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCc-ee--EEeeCCCC
Q 001534 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQ--YTFEGHEA 498 (1058)
Q Consensus 422 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~-~~--~~l~~~~~ 498 (1058)
++.+|..+++|...|+++.+.+.... -....+.|+.+..+|..+ .|++.+.++.|.+||.+... .. ..+.....
T Consensus 119 ~~~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~ 195 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK 195 (609)
T ss_pred eEecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence 99999999999999999977654221 112335899999999977 89999999999999987654 22 22223445
Q ss_pred CeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEE-------ecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEE
Q 001534 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-------YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1058)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1058)
....+.|+|... .+|++.+..+-+.+||.+....... +......-.++.|+|+|+.+++.-. ...-.+
T Consensus 196 ~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P~~ 270 (609)
T KOG4227|consen 196 NFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCPLY 270 (609)
T ss_pred cceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCCEE
Confidence 677788998765 6899999999999999987554331 1111223467889999999988753 333457
Q ss_pred eeCCCCce-eEeecCCCC-----CceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------------------e
Q 001534 572 WNESEGAI-KRTYSGFRK-----RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN-----------------------M 622 (1058)
Q Consensus 572 wd~~~~~~-~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------~ 622 (1058)
||+.+.++ +..+..... ..+.+++|..+- .+++|+.+-.|++|.+.... .
T Consensus 271 ~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~ 349 (609)
T KOG4227|consen 271 FDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKE 349 (609)
T ss_pred eeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecce
Confidence 78776443 333331111 146678887654 48999999999999875311 2
Q ss_pred EEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECC
Q 001534 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1058)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1058)
+..+.+|. .-++.+.|+|...+|++.+-...+++|...
T Consensus 350 ~~VLrGHR--Sv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 350 LTVLRGHR--SVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eEEEeccc--ccccceeecCCcceEeccchhhheeccccc
Confidence 23344443 467899999999999999999999999754
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-16 Score=154.37 Aligned_cols=244 Identities=15% Similarity=0.234 Sum_probs=184.4
Q ss_pred eeEeecCCCCeeEEEEe-------cCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCc--
Q 001534 339 VVRTLNQGSNVMSMDFH-------PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI-- 409 (1058)
Q Consensus 339 ~~~~~~h~~~V~~~~fs-------pdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-- 409 (1058)
....+.....|...+|= |+.. ++|+.+.+.-|++||.-+|+...+ ++.+ .|-.
T Consensus 97 ~~~r~~eg~tvydy~wYs~M~s~qP~t~-l~a~ssr~~PIh~wdaftG~lraS--y~~y---------------dh~de~ 158 (406)
T KOG2919|consen 97 LSYRYQEGETVYDYCWYSRMKSDQPSTN-LFAVSSRDQPIHLWDAFTGKLRAS--YRAY---------------DHQDEY 158 (406)
T ss_pred eeEEeccCCEEEEEEeeeccccCCCccc-eeeeccccCceeeeeccccccccc--hhhh---------------hhHHhh
Confidence 33444467788888876 5665 788889999999999999998764 2222 2333
Q ss_pred -CeEEEEECCCCCEEEEEeCCCeEEEEEec-CCCceeeeeee----ecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEE
Q 001534 410 -SVNRCVWGPDGLMLGVAFSKHIVHLYTYN-PTGELRQHLEI----DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1058)
Q Consensus 410 -~v~~~~~spd~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~----~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd 483 (1058)
...+++|+|||.+|.+| ....|+++|+. .|.......++ .+..+-|.+++|+|-... .++.|+...++-|+.
T Consensus 159 taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~-~~a~gsY~q~~giy~ 236 (406)
T KOG2919|consen 159 TAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSK-TLAVGSYGQRVGIYN 236 (406)
T ss_pred hhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCc-ceeeecccceeeeEe
Confidence 34689999999999887 56689999994 44322222121 133677999999998776 799999999999999
Q ss_pred cCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeC-CCeEEEEeCCCCCce-EEecCCCC-cEE--EEEEcCCCCEEEE
Q 001534 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSR-VDYDAPGN-WCT--MMAYSADGTRLFS 558 (1058)
Q Consensus 484 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~-d~~i~~wd~~~~~~~-~~~~~~~~-~v~--~~~~s~~~~~l~~ 558 (1058)
-..++++..+.+|.+.|+.++|.+ +|+.|++|+. |..|..||++..... ..+..|.. .-. -....|++++|++
T Consensus 237 ~~~~~pl~llggh~gGvThL~~~e--dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~Las 314 (406)
T KOG2919|consen 237 DDGRRPLQLLGGHGGGVTHLQWCE--DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILAS 314 (406)
T ss_pred cCCCCceeeecccCCCeeeEEecc--CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeec
Confidence 889999999999999999999995 5578888875 788999999975543 34444333 112 3445689999999
Q ss_pred EecCCCCCceEEEeeCCC-CceeEeecCCCCCceeEEEEcCCCCEEEEEeCC
Q 001534 559 CGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE 609 (1058)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1058)
++. +|.|++||+++ |..+..+..+.. .++.++++|--..+++++..
T Consensus 315 G~t----dG~V~vwdlk~~gn~~sv~~~~sd-~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 315 GDT----DGSVRVWDLKDLGNEVSVTGNYSD-TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cCC----CccEEEEecCCCCCcccccccccc-cccceecCcccceeeeccCc
Confidence 864 88899999998 777777777776 89999999998877777654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-18 Score=173.52 Aligned_cols=297 Identities=17% Similarity=0.255 Sum_probs=234.9
Q ss_pred Eeec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC-
Q 001534 341 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP- 418 (1058)
Q Consensus 341 ~~~~-h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp- 418 (1058)
..|. |.+.|+.|-|...|. +|++|+.|..|.+||+..+..... ...+|...|....|-|
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~ 196 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPF 196 (559)
T ss_pred hcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCC
Confidence 4444 999999999999997 899999999999999998876543 1468999999999998
Q ss_pred -CCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEee---
Q 001534 419 -DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE--- 494 (1058)
Q Consensus 419 -d~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~--- 494 (1058)
+.+.+++++.||.|++=.+...........+..|.++|.-++.-|+..+ -|.+++.|+.+.-.|++.+.+...+.
T Consensus 197 s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~ 275 (559)
T KOG1334|consen 197 SGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCRE 275 (559)
T ss_pred CCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeec
Confidence 4568999999999999888766666555577789999999999999887 79999999999999998876654432
Q ss_pred CCCC---CeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCce------EEe------cCCCCcEEEEEEcCCCCEEEEE
Q 001534 495 GHEA---PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR------VDY------DAPGNWCTMMAYSADGTRLFSC 559 (1058)
Q Consensus 495 ~~~~---~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~------~~~------~~~~~~v~~~~~s~~~~~l~~~ 559 (1058)
.+.. ...+++.+|... ..+++++.|..+++||.+..... ..+ ......|++++|+.++.-+++.
T Consensus 276 ~~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS 354 (559)
T KOG1334|consen 276 ADEKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS 354 (559)
T ss_pred cCCccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee
Confidence 2333 567788887643 68999999999999998753332 111 1233478999999777666655
Q ss_pred ecCCCCCceEEEeeCCC--C----------ceeE-eecCCCCC-ceeEEE-EcCCCCEEEEEeCCCeEEEEECCCCceEE
Q 001534 560 GTSKEGESHLVEWNESE--G----------AIKR-TYSGFRKR-SLGVVQ-FDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1058)
Q Consensus 560 ~~~~~~~~~i~~wd~~~--~----------~~~~-~~~~~~~~-~v~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1058)
.. +-.|+++.-.. | ..+. .+++|... .|..+- |.|...++++|++-|.|.||+-.+++.+.
T Consensus 355 Yn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 355 YN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred ec----ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence 43 56688885432 2 2233 37888653 455555 47888999999999999999999999999
Q ss_pred EEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001534 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
.+.+..+ -|+|+.-+|--..||+.+-|..|+||...+.
T Consensus 431 ~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 431 FMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred Hhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 9988776 6999999999999999999999999987544
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-18 Score=185.36 Aligned_cols=280 Identities=16% Similarity=0.275 Sum_probs=215.7
Q ss_pred EeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCC
Q 001534 341 RTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1058)
Q Consensus 341 ~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~ 420 (1058)
+.+.|-.+|+|+.|...|. .+++|+.|..|+||..+++.++.+ ..||.+.|+.++.+.+.
T Consensus 185 rLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~~n 244 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSSNN 244 (1113)
T ss_pred HHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccchhh
Confidence 3445889999999999997 688999999999999999998876 78999999999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEE---eeC-C
Q 001534 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT---FEG-H 496 (1058)
Q Consensus 421 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~---l~~-~ 496 (1058)
.++|+++.|..|++|.+.++..+. .+.+|++.|++++|+|- .+.+.||++++||.+-.-.+.. +.. .
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~ 315 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTE 315 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCccc
Confidence 999999999999999999998776 78899999999999985 3678899999999871111111 111 2
Q ss_pred CCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCC-EEEEEecCCCCCceEEEeeCC
Q 001534 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWNES 575 (1058)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~ 575 (1058)
...+.++.|. .++.-+++++.|+.-..|.+..... +...+.-+.++.+.. +.+++- .+..+.+|++.
T Consensus 316 ~~~~~s~~~~--~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwnl~ 383 (1113)
T KOG0644|consen 316 KDLVDSILFE--NNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWNLY 383 (1113)
T ss_pred ccceeeeecc--ccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeee----eeeEeeeeecc
Confidence 2344555554 4557899999999988886543111 111111222222322 222332 36778999999
Q ss_pred CCceeEeecCCCCCceeEEEEcCCCCEEE-EEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCC
Q 001534 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1058)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 654 (1058)
+|...+.+.+|.. .+..+.++|-+..++ +++.||...|||+-.|.+++..... + ..+....||+||..++....-|
T Consensus 384 ~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~lsd~hg 460 (1113)
T KOG0644|consen 384 TGQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALSDDHG 460 (1113)
T ss_pred cchhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEecCCCCC
Confidence 9999999999988 889999999776554 5899999999999999888777533 2 3567889999999999988889
Q ss_pred cEEEEECCCC
Q 001534 655 GIKILANSDG 664 (1058)
Q Consensus 655 ~i~iw~~~~~ 664 (1058)
.+.|.....+
T Consensus 461 ql~i~g~gqs 470 (1113)
T KOG0644|consen 461 QLYILGTGQS 470 (1113)
T ss_pred ceEEeccCCC
Confidence 9999876544
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.8e-16 Score=165.13 Aligned_cols=533 Identities=13% Similarity=0.146 Sum_probs=325.0
Q ss_pred cCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecC----------CCceEEEEEcCCCc
Q 001534 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP----------NKQLCIVTCGDDKM 478 (1058)
Q Consensus 409 ~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d----------~~~~~l~s~~~d~~ 478 (1058)
..-.++.|+|.| ++|.|+.. .|.+-|..+-+.+. .+..|...|+.+.|.|. ...++++++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 346788999877 56777554 68888888766555 67789999999999773 23457888999999
Q ss_pred EEEEEcCCCceeEEeeCCCCCeEEEEecccCCc--cEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcC-CCCE
Q 001534 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI--QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA-DGTR 555 (1058)
Q Consensus 479 v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~--~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 555 (1058)
|.+||...+..+..+..|..++..++|-+..+. ..|++-....++.+|+.++++.............++.+.| |.+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 999999999999999999999999999876543 5778888889999999999999998888777788888888 4455
Q ss_pred EEEEecCCCCCceEEEeeCC-C------CceeEeecCCCC-----------Cc-------------eeEEEEcCCCCEEE
Q 001534 556 LFSCGTSKEGESHLVEWNES-E------GAIKRTYSGFRK-----------RS-------------LGVVQFDTTRNRFL 604 (1058)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~-~------~~~~~~~~~~~~-----------~~-------------v~~~~~~~~~~~l~ 604 (1058)
+...+. .|.+.+-+.- . |+..+.-..|.. .. ...++|+|.-+.++
T Consensus 171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 444432 3444444321 1 111111111111 00 11256788777677
Q ss_pred EEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCC--CCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCC
Q 001534 605 AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE--GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (1058)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 682 (1058)
.......+.++|++-...+.......+. +.-+.+-|+ ...|++...||.+.+|-.......+..-..+-
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~~--akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l------- 317 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERGG--AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASL------- 317 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccCC--cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhh-------
Confidence 7777788999999999999888877653 444556554 55799999999999996543211111100000
Q ss_pred CCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCcccee
Q 001534 683 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 762 (1058)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~ 762 (1058)
+ +|+. .++.
T Consensus 318 --------------------------~----------------------------------------~dl~-----~Q~~ 326 (1062)
T KOG1912|consen 318 --------------------------S----------------------------------------MDLG-----EQVH 326 (1062)
T ss_pred --------------------------c----------------------------------------cccc-----cceE
Confidence 0 0000 0000
Q ss_pred EEecCCCcCcCceEEEEEccC-CceEEEeeccceEEEEEcccCCCCCCCcccccccccccCC--CCCCccc---cccC-C
Q 001534 763 ALRLPDSIAASKVVRLIYTNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP--PSGTLMT---NDIN-E 835 (1058)
Q Consensus 763 ~~~~~~~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~-~ 835 (1058)
.+... .+-.+...+..|. ...++..-++|...+|.+..+....++..-...-..-+|. .+.-... ..+. .
T Consensus 327 ~vr~m---~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~d 403 (1062)
T KOG1912|consen 327 VVRPM---EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDD 403 (1062)
T ss_pred EEeec---hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhc
Confidence 00000 1111222222333 3334444556677777776543333322211000000000 0000000 0000 0
Q ss_pred CCCCCCCeeEEEEcc-----------CCc-------EEEEEe-CCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCE
Q 001534 836 SKPTEESAACIALSK-----------NDS-------YVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNI 896 (1058)
Q Consensus 836 ~~h~~~~i~~~~~s~-----------d~~-------~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~ 896 (1058)
..| ..+.++....| -|+ ++|.|. .|+|.++|+.++...+.+..|.+.|.++.|.. ..++
T Consensus 404 g~h-~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~ssl 481 (1062)
T KOG1912|consen 404 GSH-SSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSSL 481 (1062)
T ss_pred CCC-CCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc-ceeE
Confidence 123 33333333322 222 567787 89999999999999999999999999999986 5554
Q ss_pred EEE---------EeCCCeEEEEEccccee--EEEE-eCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceee
Q 001534 897 IAI---------GMEDSSVQIYNVRVDEV--KTKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI 964 (1058)
Q Consensus 897 las---------g~~dg~I~iwd~~~~~~--~~~l-~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 964 (1058)
+-. |+.-+.+.+-|+.+|.- .+.+ +....+|..+..|.-++||+..-.|.-+.+||+.+-.++.....
T Consensus 482 vSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~ 561 (1062)
T KOG1912|consen 482 VSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSL 561 (1062)
T ss_pred EEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhh
Confidence 432 22233577889998842 2222 23567899999999999999999999999999988665543222
Q ss_pred ecCCCCCCCCCCeeEEEEc-CCCcEEE---------------EEeCCeEEEEeC--CCCeeeE-------EeeccccceE
Q 001534 965 QAPAGRQSPLVGETKVQFH-NDQTHLL---------------VVHESQISVYDS--KLECSRS-------VSFLSLCPYV 1019 (1058)
Q Consensus 965 ~~~~~~~~~~~~v~~~~fs-~d~~~l~---------------~~~d~~i~vwd~--~~~~~~~-------~~~~~~~~~~ 1019 (1058)
..+ .|+.+.|+ |.-.-+. +...+..+++.+ .+..... +....+....
T Consensus 562 a~P--------~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~ 633 (1062)
T KOG1912|consen 562 ALP--------LITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCA 633 (1062)
T ss_pred cCC--------cEEEEeecccCCCCcccccchhhhhhhhceeeeccccchheehhhhhhhhccccchhhHHHHHHHHHHh
Confidence 222 16788887 3322211 111123444444 1111111 1112233333
Q ss_pred EccCCcEEEEEECCCeEEEEcCCC
Q 001534 1020 FGVSSIFLLSTLTKLSVAVHDPLM 1043 (1058)
Q Consensus 1020 ~s~~~~~l~~~~~d~~v~vw~~~~ 1043 (1058)
..-.+..++.|..+|.+.+||+-.
T Consensus 634 mAwk~d~lv~GD~~GNl~~WDlg~ 657 (1062)
T KOG1912|consen 634 MAWKDDILVVGDVEGNLVVWDLGR 657 (1062)
T ss_pred hhccCCeeEeecccCceeEEeccc
Confidence 445688899999999999999543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-17 Score=158.98 Aligned_cols=274 Identities=12% Similarity=0.149 Sum_probs=195.0
Q ss_pred eEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC--CCCEEEEEeCCCeEEEEEe
Q 001534 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLGVAFSKHIVHLYTY 437 (1058)
Q Consensus 360 ~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--d~~~l~~~~~d~~i~vwd~ 437 (1058)
..+|++...|.|++||..+++.+.. +++|...++.++|.. ....+.+|+.||+|++||+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~ 101 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI 101 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence 4688888999999999999887764 778999999999987 4668899999999999999
Q ss_pred cCCCceeeeeeeecCc-CCeEEEEEecCCCceEEEEEc----CCCcEEEEEcCCCce-eEEe-eCCCCCeEEEEecccCC
Q 001534 438 NPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCG----DDKMIKVWDVVAGRK-QYTF-EGHEAPVYSVCPHHKES 510 (1058)
Q Consensus 438 ~~~~~~~~~~~~~~h~-~~v~~~~fs~d~~~~~l~s~~----~d~~v~vwd~~~~~~-~~~l-~~~~~~v~~~~~~~~~~ 510 (1058)
+.......+ .+.++. .+..+++-+..++ ++++|. .+-.|.+||++..+. +..+ ..|...|++++|+|...
T Consensus 102 Rs~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 102 RSQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP 178 (376)
T ss_pred ecchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC
Confidence 987654433 344555 4667777765665 666664 356899999998766 5554 46999999999999755
Q ss_pred ccEEEEEeCCCeEEEEeCCCCCce---EEecCCCCcEEEEEEcCCC-CEEEEEecCCCCCceEEEeeCCCCceeEeecCC
Q 001534 511 IQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1058)
Q Consensus 511 ~~~l~s~s~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1058)
++|++||.||-|.+||+...... .....+...|..+.|..++ +.+.+.+ ......+|+++.+.....+...
T Consensus 179 -nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT----H~Etf~~~ele~~~~~~~~~~~ 253 (376)
T KOG1188|consen 179 -NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT----HMETFAIYELEDGSEETWLENP 253 (376)
T ss_pred -CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE----ccCceeEEEccCCChhhcccCc
Confidence 89999999999999998765332 2233456679999999887 3455544 3666999999988755544332
Q ss_pred CC------------CceeEEEEcC-CCCEEEEEeC-CCeEEEEECC---CCc---eEEEEecCCCCCCcceEEEeCCCCE
Q 001534 587 RK------------RSLGVVQFDT-TRNRFLAAGD-EFQIKFWDMD---NMN---MLTTVDADGGLPASPRLRFNKEGSL 646 (1058)
Q Consensus 587 ~~------------~~v~~~~~~~-~~~~l~~~~~-dg~i~iwd~~---~~~---~~~~~~~~~~~~~v~~~~~s~~~~~ 646 (1058)
.- ..|.+ .+| +...++.++. -|...++-+. ++. .+..+.++ +..-|.++.|...+..
T Consensus 254 ~~~~~d~r~~~~~dY~I~~--~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~-~~eiVR~i~~~~~~~~ 330 (376)
T KOG1188|consen 254 DVSADDLRKEDNCDYVINE--HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG-HEEIVRDILFDVKNDV 330 (376)
T ss_pred cchhhhHHhhhhhhheeec--ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCC-cHHHHHHHhhhcccce
Confidence 10 01111 223 3344555443 5555555433 332 33333332 3346788889889999
Q ss_pred EEEEECCCcEEEEECCC
Q 001534 647 LAVTTSDNGIKILANSD 663 (1058)
Q Consensus 647 l~~~~~dg~i~iw~~~~ 663 (1058)
+.+|+.||.+.+|....
T Consensus 331 l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 331 LYTGGEDGLLQAWKVED 347 (376)
T ss_pred eeccCCCceEEEEecCC
Confidence 99999999999998643
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-17 Score=154.92 Aligned_cols=307 Identities=14% Similarity=0.158 Sum_probs=193.1
Q ss_pred eeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEE
Q 001534 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1058)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 658 (1058)
+...++.|.. .++++.|..++ +|++|..-|.|++|++.+.+....+..++. ..|+.+.--|+ ..+.+-+.|+.+.+
T Consensus 6 P~fvLRp~~~-~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 6 PFFVLRPHSS-SVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred CeeEeccccc-hheehhhccch-hhhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecCC-cchhhcCCCceEEE
Confidence 4455666766 79999998776 499999999999999999998888875544 36777777776 56888999999999
Q ss_pred EECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCcc
Q 001534 659 LANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKP 738 (1058)
Q Consensus 659 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1058)
|++.-+ ..+. .|...+....+- .|+........ ...
T Consensus 82 w~ia~s-~~i~---i~Si~~nslgFC-------rfSl~~~~k~~---------------------------------eql 117 (323)
T KOG0322|consen 82 WTIAYS-AFIS---IHSIVVNSLGFC-------RFSLVKKPKNS---------------------------------EQL 117 (323)
T ss_pred EEccCc-ceEE---Eeeeeccccccc-------cceeccCCCcc---------------------------------hhh
Confidence 998654 1111 111111110000 00000000000 000
Q ss_pred cccccc--ccccccccCCcCCccceeEEecCCCcCcCceEEEEEcc-CCc--eEEEeeccceEEEEEcccCCCCCCCccc
Q 001534 739 RVAEDV--DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN-SGL--SLLALASNAVHKLWKWQRTERNPSGKAT 813 (1058)
Q Consensus 739 ~~~~~~--~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~g~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 813 (1058)
+..... ..+.+-|... ..+.....-+.....+.+.+..+.. +++ .+++|.++|.+.+||+......
T Consensus 118 l~yp~rgsde~h~~D~g~---~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~------ 188 (323)
T KOG0322|consen 118 LEYPSRGSDETHKQDGGD---TTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI------ 188 (323)
T ss_pred eecCCcccchhhhhccCc---cceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee------
Confidence 000000 0011111110 0011111111122444555544221 222 3567777899999998764221
Q ss_pred ccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEECCC--ce--EEEEecCCCCCeEEEE
Q 001534 814 ANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT--FK--VMTMFMSPPPAATFLA 888 (1058)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~--~~--~~~~~~~~~~~i~~l~ 888 (1058)
.++.....+...... | ..+|.++.|.+.-..=++|+ +..+..|+++. +. ......-....|..+.
T Consensus 189 -------~~~~~~~kv~~~~as--h-~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvr 258 (323)
T KOG0322|consen 189 -------IQLPQSSKVESPNAS--H-KQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVR 258 (323)
T ss_pred -------eccccccccccchhh--c-cCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceE
Confidence 111111111112223 7 89999999987655556666 77788888864 22 2222333355688899
Q ss_pred EeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001534 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953 (1058)
Q Consensus 889 ~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~ 953 (1058)
.-| |++++|++++|+.|+||..++..++..++-|.+.|.+++|+||...+|.+|.|+.|-+|++
T Consensus 259 IRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 259 IRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred Ecc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999 9999999999999999999999999999999999999999999999999999999999986
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-16 Score=175.17 Aligned_cols=272 Identities=16% Similarity=0.204 Sum_probs=202.4
Q ss_pred cceecCCccccceeEeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccC
Q 001534 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1058)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1058)
+.+|+.+.. ..+...+....+|+|++|+|....++|.|+.+|.|.+||+..+...... ........
T Consensus 224 ~~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s-------------~ls~~~~s 289 (555)
T KOG1587|consen 224 LLVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS-------------GLSALEVS 289 (555)
T ss_pred EEEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc-------------cccccccc
Confidence 444555544 6777888889999999999999999999999999999999987753210 01112456
Q ss_pred CCcCeEEEEECCCCC--EEEEEeCCCeEEEEEecCCCceeeeeeee---------cCcCCeEEEEEecCCCceEEEEEcC
Q 001534 407 AAISVNRCVWGPDGL--MLGVAFSKHIVHLYTYNPTGELRQHLEID---------AHVGGVNDIAFAHPNKQLCIVTCGD 475 (1058)
Q Consensus 407 h~~~v~~~~~spd~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~---------~h~~~v~~~~fs~d~~~~~l~s~~~ 475 (1058)
|..+|+.+.|-.+.. -+++++.||.|..|+++.-........+. .-...+++++|.+...+ .++.|+.
T Consensus 290 h~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe 368 (555)
T KOG1587|consen 290 HSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTE 368 (555)
T ss_pred CCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcC
Confidence 999999999987544 49999999999999887543211111111 11236899999998877 7899999
Q ss_pred CCcEEEEEcC---CCc-----eeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCC-CCCceEEecCCCCcEEE
Q 001534 476 DKMIKVWDVV---AGR-----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPGNWCTM 546 (1058)
Q Consensus 476 d~~v~vwd~~---~~~-----~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~-~~~~~~~~~~~~~~v~~ 546 (1058)
+|.|.-=+-. .+. ....+..|.++|+++.++|-.. ..+++++ |.++++|... ...+...+..+...+++
T Consensus 369 ~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~ 446 (555)
T KOG1587|consen 369 EGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTD 446 (555)
T ss_pred CcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeee
Confidence 9998873322 221 1235566889999999988764 4455555 9999999988 66667777777778999
Q ss_pred EEEcCCCCEEEEEecCCCCCceEEEeeCCCC--ceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001534 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1058)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 619 (1058)
++|||....++++. +.+|.+.+||+... .++.+...... ..+.+.|+++|+.+++|...|.+.+|++..
T Consensus 447 vaWSptrpavF~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~~~-~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 447 VAWSPTRPAVFATV---DGDGNLDIWDLLQDDEEPVLSQKVCSP-ALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eEEcCcCceEEEEE---cCCCceehhhhhccccCCccccccccc-ccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 99999988777666 36899999999753 34444444433 677888999999999999999999999864
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-17 Score=154.69 Aligned_cols=284 Identities=15% Similarity=0.181 Sum_probs=197.2
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeeccccccccccccccc-CCCcCeEEEEECCCCCE
Q 001534 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-DAAISVNRCVWGPDGLM 422 (1058)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~spd~~~ 422 (1058)
.|.+.|+++.|-.+++ |.+|..-|.|++|++++...... +. .|...|+.+.--|+ ..
T Consensus 12 p~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~lq~~p~-d~ 69 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITNLQSIPN-DS 69 (323)
T ss_pred cccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeeceeecCC-cc
Confidence 4889999999999986 67899999999999998765542 23 47788999999888 56
Q ss_pred EEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCC-----Cce--EEEEEcCCC-cEEEEEcCCCceeEEe-
Q 001534 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN-----KQL--CIVTCGDDK-MIKVWDVVAGRKQYTF- 493 (1058)
Q Consensus 423 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~-----~~~--~l~s~~~d~-~v~vwd~~~~~~~~~l- 493 (1058)
|.+-+.|+.+.+|++..+..+. -|.-.++++.|.+-. +.. .++.-+... .+.+-|......+...
T Consensus 70 l~tqgRd~~L~lw~ia~s~~i~------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~d 143 (323)
T KOG0322|consen 70 LDTQGRDPLLILWTIAYSAFIS------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIAD 143 (323)
T ss_pred hhhcCCCceEEEEEccCcceEE------EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccC
Confidence 7788899999999998754332 345556666665431 110 111111100 0112222111122211
Q ss_pred ---eCCCCCeEEEEecccCC-ccEEEEEeCCCeEEEEeCCCCCceE----------EecCCCCcEEEEEEcCCCCEEEEE
Q 001534 494 ---EGHEAPVYSVCPHHKES-IQFIFSTAIDGKIKAWLYDYLGSRV----------DYDAPGNWCTMMAYSADGTRLFSC 559 (1058)
Q Consensus 494 ---~~~~~~v~~~~~~~~~~-~~~l~s~s~d~~i~~wd~~~~~~~~----------~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1058)
.+..+.+.+..+..... .-++++|-++|.+.+||+.++.... ....|..+|.++.+.+.-..=+++
T Consensus 144 d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisg 223 (323)
T KOG0322|consen 144 DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISG 223 (323)
T ss_pred chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCC
Confidence 12345666666433222 2356777889999999999874443 334567789999998765555555
Q ss_pred ecCCCCCceEEEeeCCCC--c-eeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcc
Q 001534 560 GTSKEGESHLVEWNESEG--A-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1058)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1058)
+. +..+..|+++.. . .++....-....+..+.+-||++.++++|.|+.||||+.++.+++..+..|.. .|+
T Consensus 224 ga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa--gvn 297 (323)
T KOG0322|consen 224 GA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA--GVN 297 (323)
T ss_pred Cc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc--cee
Confidence 53 555778877532 2 12222222333688899999999999999999999999999999999998864 799
Q ss_pred eEEEeCCCCEEEEEECCCcEEEEEC
Q 001534 637 RLRFNKEGSLLAVTTSDNGIKILAN 661 (1058)
Q Consensus 637 ~~~~s~~~~~l~~~~~dg~i~iw~~ 661 (1058)
+++|+|+...+|+++.|+.|.+|++
T Consensus 298 ~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 298 AVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999986
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-17 Score=158.71 Aligned_cols=295 Identities=12% Similarity=0.125 Sum_probs=201.4
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEE--ecCCC-CcEE
Q 001534 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YDAPG-NWCT 545 (1058)
Q Consensus 469 ~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~--~~~~~-~~v~ 545 (1058)
.++++-..|+|++||..+|+.+..++++...++.+.|......+.+.+++.||+|++||++....... +..+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 67888889999999999999999999999999999998754568999999999999999998766543 33333 3667
Q ss_pred EEEEcCCCCEEEEEecCCCCCceEEEeeCCCCce-eEeecCCCCCceeEEEEcCC-CCEEEEEeCCCeEEEEECCCCceE
Q 001534 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTT-RNRFLAAGDEFQIKFWDMDNMNML 623 (1058)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1058)
+++..-+++.++++..-...+..+.+||.+..+. ++.+...+...|++++|+|. .+.|++|+.||-|.+||+.....-
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 7777767788887765555577899999998765 66665544448999999996 468889999999999999764322
Q ss_pred EEE-ecCCCCCCcceEEEeCCC-CEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcc
Q 001534 624 TTV-DADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASN 701 (1058)
Q Consensus 624 ~~~-~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1058)
..+ ..-.+...|.++.|..++ +.|.+-+..++..+|+++.+.. ...++.... .....- ......+++
T Consensus 202 DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~-~~~~~~~~~--~~~d~r---~~~~~dY~I----- 270 (376)
T KOG1188|consen 202 DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE-ETWLENPDV--SADDLR---KEDNCDYVI----- 270 (376)
T ss_pred hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh-hhcccCccc--hhhhHH---hhhhhhhee-----
Confidence 111 111222358899999876 4588888899999999988742 211111100 000000 000000000
Q ss_pred cccccCCCCCCCCCCCCCccccccCCCCCccccCCcc-ccccc-cccccccccCCcCCccceeEEecCCCcCcCceEEEE
Q 001534 702 VSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKP-RVAED-VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779 (1058)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 779 (1058)
......+... .+.+. .+...++.+.................+|..-|+++.
T Consensus 271 ---------------------------~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~ 323 (376)
T KOG1188|consen 271 ---------------------------NEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDIL 323 (376)
T ss_pred ---------------------------ecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHh
Confidence 0000111122 22233 366666666543333444444455556788888999
Q ss_pred EccCCceEEEeeccceEEEEEc
Q 001534 780 YTNSGLSLLALASNAVHKLWKW 801 (1058)
Q Consensus 780 ~s~~g~~l~~~~~dg~i~vw~~ 801 (1058)
|...+..+.+|++||.+.+|..
T Consensus 324 ~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 324 FDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred hhcccceeeccCCCceEEEEec
Confidence 9999999999999999999974
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=171.19 Aligned_cols=251 Identities=14% Similarity=0.162 Sum_probs=190.6
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecC-----CCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCc
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP-----TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~-----~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~ 478 (1058)
+..|...|.+++|.|....|++++.||++.+|+++. ...+.++.++.+|.++|.|+++++.++ .+++|+.||+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg~ 367 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDGT 367 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCce
Confidence 667999999999999999999999999999999932 344677779999999999999999999 8999999999
Q ss_pred EEEEEcCC------C----ceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecC--CCCcEEE
Q 001534 479 IKVWDVVA------G----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--PGNWCTM 546 (1058)
Q Consensus 479 v~vwd~~~------~----~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~--~~~~v~~ 546 (1058)
|+.|++.. . .....+.||.+.|+.++++... ..|++++.||+++.|+...... .++.. ..+.-.+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 99996532 1 2335678999999999999776 5799999999999998766554 33322 2223345
Q ss_pred EEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCC------CCceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001534 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1058)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 620 (1058)
+.+......+..++. ..+.-.+++...+..+..+.... ...++.+.++|.+.+.+++..|+.|+++|..++
T Consensus 445 vd~~ss~~a~~~~s~---~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASF---RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred EeeccchhHhhhhhc---ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 555433312222111 12222334444443333332211 124677889999999999999999999999999
Q ss_pred ceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001534 621 NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 621 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
+++.....+.. .++++++.|+|.+|++++.||.+++|.+...
T Consensus 522 ~~l~s~~a~~~--svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 522 KILHSMVAHKD--SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccchheeeccc--eecceeecCCCceEEeecCCceeehhhccch
Confidence 99988877654 7899999999999999999999999998654
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-17 Score=171.60 Aligned_cols=267 Identities=13% Similarity=0.205 Sum_probs=193.2
Q ss_pred eec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCC
Q 001534 342 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1058)
Q Consensus 342 ~~~-h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~ 420 (1058)
++. |.+.|++++|.|-.. .+++++.||.+.+|+++....-.... ..+...+.+|.++|.|++.++++
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~-----------~epi~tfraH~gPVl~v~v~~n~ 356 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKD-----------VEPILTFRAHEGPVLCVVVPSNG 356 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccc-----------eeeeEEEecccCceEEEEecCCc
Confidence 444 899999999999998 78999999999999995422111111 11223378999999999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCC-------ceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEe
Q 001534 421 LMLGVAFSKHIVHLYTYNPTG-------ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1058)
Q Consensus 421 ~~l~~~~~d~~i~vwd~~~~~-------~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l 493 (1058)
+.+.+|+.||+|+.|++.... .......+.||.+.|+.+++|+... .|++++.||+++.|+.....+ .++
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-ccc
Confidence 999999999999999664221 1112236779999999999999888 699999999999999776655 333
Q ss_pred eC--CCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCC-------CCcEEEEEEcCCCCEEEEEecCCC
Q 001534 494 EG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------GNWCTMMAYSADGTRLFSCGTSKE 564 (1058)
Q Consensus 494 ~~--~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1058)
.. ..+...++.+..... .+.++...-+.--+++++.......+... ...+..+.++|.+...+++.
T Consensus 434 ~~~~e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h---- 508 (577)
T KOG0642|consen 434 GEPKEHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH---- 508 (577)
T ss_pred CCccccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecc----
Confidence 22 223344454432211 12222222233333444444333333221 13567788899998888887
Q ss_pred CCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecC
Q 001534 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1058)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1058)
.+..|+++|..++.++.....|.. .++++++.|+|.+|++++.||.+++|.+.....+.....+
T Consensus 509 ed~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 509 EDRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred cCCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 488899999999999999999888 8999999999999999999999999999876665554433
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-15 Score=141.12 Aligned_cols=281 Identities=18% Similarity=0.246 Sum_probs=193.0
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEe
Q 001534 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1058)
Q Consensus 348 ~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~ 427 (1058)
.|.+-++||.++ +++.|+.+|.|.+..+.+-..-..+ ...........+|.++|+.++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~---------~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAE---------PPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccC---------CCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 567778999998 7888999999999998753211100 00111122247899999999997 45676664
Q ss_pred CCCeEEEEEecCCCceeeee-----eeecCc-----CCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCC
Q 001534 428 SKHIVHLYTYNPTGELRQHL-----EIDAHV-----GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1058)
Q Consensus 428 ~d~~i~vwd~~~~~~~~~~~-----~~~~h~-----~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~ 497 (1058)
||.|+-|...........+ ...-|. ..|++|...|..+ -++.++.|+.++-||+++|+..++++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 5999999886543210000 011122 3589999998877 45556679999999999999999999999
Q ss_pred CCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCC----------CCcEEEEEEcCCCCEEEEEecCCCCCc
Q 001534 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP----------GNWCTMMAYSADGTRLFSCGTSKEGES 567 (1058)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1058)
+.|.++.--. ....+++|++||++|+||.++.+....+... +.+|-+++ -+..++++++ ..
T Consensus 157 DYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-----Gp 227 (325)
T KOG0649|consen 157 DYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-----GP 227 (325)
T ss_pred ceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-----CC
Confidence 9999998632 2257999999999999999998887765432 22444444 5677888875 45
Q ss_pred eEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCC-CE
Q 001534 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG-SL 646 (1058)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~ 646 (1058)
.+.+|.+++.++...+.-.. .+..+.|.. ..++++|..+.|.-|.+. |......+...+ .+++..|+... ++
T Consensus 228 ~lslwhLrsse~t~vfpipa--~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPA--RVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEeccc--ceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCceEE
Confidence 59999999988877766432 566777764 468888888889999875 344444433322 34555555433 34
Q ss_pred EEEEECCCcEEEE
Q 001534 647 LAVTTSDNGIKIL 659 (1058)
Q Consensus 647 l~~~~~dg~i~iw 659 (1058)
+-.++..+.+.++
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4455556666655
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-15 Score=163.31 Aligned_cols=199 Identities=13% Similarity=0.171 Sum_probs=132.7
Q ss_pred eEEEEEccCCceEEEeec-cceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCc
Q 001534 775 VVRLIYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 853 (1058)
Q Consensus 775 i~~l~~s~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~ 853 (1058)
...++++|+|+.+++++. ++.+.+|++..... .. .... .+.+ .....+++++|||+
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~-----~~-------------~~~~-~~~~----~~~~~~~~~~p~g~ 138 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGI-----PV-------------APIQ-IIEG----LEGCHSANIDPDNR 138 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC-----CC-------------Ccee-eccC----CCcccEeEeCCCCC
Confidence 457899999998888765 68899998752110 00 0000 0111 23356789999999
Q ss_pred EEEEEe--CCeEEEEECCCceEEEE-----ec-CCCCCeEEEEEeCCCCCEEEEEeC-CCeEEEEEccc--c--eeEEEE
Q 001534 854 YVMSAS--GGKVSLFNMMTFKVMTM-----FM-SPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNVRV--D--EVKTKL 920 (1058)
Q Consensus 854 ~la~~s--dg~i~iwd~~~~~~~~~-----~~-~~~~~i~~l~~s~~~~~~lasg~~-dg~I~iwd~~~--~--~~~~~l 920 (1058)
++++++ ++.|.+||+.+...+.. .. ........++|+| ++++++++.+ +++|.+|+++. + +.+..+
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~ 217 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTL 217 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEE
Confidence 997776 68999999976332211 11 1233467899999 8999888876 89999999973 3 334444
Q ss_pred eCC------CCCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEE-
Q 001534 921 KGH------QNRITGLAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV- 992 (1058)
Q Consensus 921 ~~h------~~~v~~l~~spd~~~l~s~s~-D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~- 992 (1058)
..+ ......+.++||+++|+++.. ++.|.+|+++.........-....+. ....+.|+|||++|+++
T Consensus 218 ~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~-----~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 218 DMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTET-----QPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred ecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccc-----cCCceEECCCCCEEEEEE
Confidence 322 112346889999999998854 78999999965331111111112222 23678999999999986
Q ss_pred -eCCeEEEEeC
Q 001534 993 -HESQISVYDS 1002 (1058)
Q Consensus 993 -~d~~i~vwd~ 1002 (1058)
.+++|.+|++
T Consensus 293 ~~~~~v~v~~~ 303 (330)
T PRK11028 293 QKSHHISVYEI 303 (330)
T ss_pred ccCCcEEEEEE
Confidence 5889999988
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8e-16 Score=148.73 Aligned_cols=396 Identities=12% Similarity=0.127 Sum_probs=243.9
Q ss_pred EEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEe
Q 001534 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1058)
Q Consensus 458 ~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~ 537 (1058)
-..|||+|+ ++++++.- .+.|-|..+-+..+.+.. -..|.-+.|..+. ...+.....|+.|.+|++...+--..+
T Consensus 13 ~c~fSp~g~--yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads-~~ilC~~yk~~~vqvwsl~Qpew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGN--YIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADS-CHILCVAYKDPKVQVWSLVQPEWYCKI 87 (447)
T ss_pred ceeECCCCC--eeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccc-eeeeeeeeccceEEEEEeecceeEEEe
Confidence 468999999 89988855 788888777665444332 3456666776433 244555677899999999988888888
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCe---EEE
Q 001534 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ---IKF 614 (1058)
Q Consensus 538 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~i 614 (1058)
+.....+.++.|||||+.++..+. -+-+|.+|.+.+.+....- |....+..++|+|+|++.+..+.-.. +.|
T Consensus 88 deg~agls~~~WSPdgrhiL~tse---F~lriTVWSL~t~~~~~~~--~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i 162 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGRHILLTSE---FDLRITVWSLNTQKGYLLP--HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQI 162 (447)
T ss_pred ccCCCcceeeeECCCcceEeeeec---ceeEEEEEEeccceeEEec--ccccCceeEEECCCCceeeeeecccHHHHHHH
Confidence 888889999999999998887653 4778999999876654322 22225688999999999888764321 222
Q ss_pred EECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCcccc
Q 001534 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 694 (1058)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1058)
........+..+.... ...+.+.|+|||..||+ ||..-...
T Consensus 163 ~~c~~W~ll~~f~~dT--~DltgieWsPdg~~laV---------wd~~Leyk---------------------------- 203 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDT--IDLTGIEWSPDGNWLAV---------WDNVLEYK---------------------------- 203 (447)
T ss_pred HhhHHHHHHHhcCCCc--ccccCceECCCCcEEEE---------ecchhhhe----------------------------
Confidence 2222223344443332 24678999999988765 44211100
Q ss_pred ccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCc
Q 001534 695 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 774 (1058)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1058)
|..+. ..-.
T Consensus 204 ----------------------------------------------------v~aYe-------------------~~lG 212 (447)
T KOG4497|consen 204 ----------------------------------------------------VYAYE-------------------RGLG 212 (447)
T ss_pred ----------------------------------------------------eeeee-------------------eccc
Confidence 00000 1124
Q ss_pred eEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcE
Q 001534 775 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 854 (1058)
Q Consensus 775 i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~ 854 (1058)
+..++++|.++.|++|+.|+.+++.+--+-+ +-++...-.++ .|...-.+.....+. . .....++.|-|..--
T Consensus 213 ~k~v~wsP~~qflavGsyD~~lrvlnh~tWk--~f~eflhl~s~--~dp~~~~~~ke~~~~--~-ql~~~cLsf~p~~~~ 285 (447)
T KOG4497|consen 213 LKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK--PFGEFLHLCSY--HDPTLHLLEKETFSI--V-QLLHHCLSFTPTDLE 285 (447)
T ss_pred eeEEEeccccceEEeeccchhhhhhceeeee--ehhhhccchhc--cCchhhhhhhhhcch--h-hhcccccccCCCccc
Confidence 6678899999999999999988875432211 11111110000 000000000000000 0 112235555553210
Q ss_pred EEEEeCCeEEEEECCC-------ceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCC--CeEEEEEcccceeEEEEeCCCC
Q 001534 855 VMSASGGKVSLFNMMT-------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED--SSVQIYNVRVDEVKTKLKGHQN 925 (1058)
Q Consensus 855 la~~sdg~i~iwd~~~-------~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d--g~I~iwd~~~~~~~~~l~~h~~ 925 (1058)
|.-...+=.+|+... .+....+..+...+.-++||+ |..++|+-.+. ..+.+||+...++...+. ...
T Consensus 286 -a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~ 362 (447)
T KOG4497|consen 286 -AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKH 362 (447)
T ss_pred -cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCCceEEEEechhhhhhhhhh-hcc
Confidence 000011112233221 111222333445678899999 99999886543 468999999877655554 456
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEE
Q 001534 926 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1058)
Q Consensus 926 ~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~ 992 (1058)
+|....|.|....|+.+.....+++|...... ++..+... -.|..++|..+|..++..
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~-----~V~vP~~G----F~i~~l~W~~~g~~i~l~ 420 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR-----VVGVPKKG----FNIQKLQWLQPGEFIVLC 420 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCce-----EEecCCCC----ceeeeEEecCCCcEEEEE
Confidence 79999999999999988888889999887632 33333321 348999999999998885
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-15 Score=144.32 Aligned_cols=270 Identities=13% Similarity=0.166 Sum_probs=197.1
Q ss_pred CCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC-CCCEEEEEeCC-------CeEEEEEec
Q 001534 367 NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGVAFSK-------HIVHLYTYN 438 (1058)
Q Consensus 367 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-d~~~l~~~~~d-------~~i~vwd~~ 438 (1058)
.|+.|.+.++..+.... ...+|..|.+.|..++-+| |.+.|+++..+ ..+.||.+.
T Consensus 38 ~dNqVhll~~d~e~s~l----------------~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ip 101 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSEL----------------LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIP 101 (370)
T ss_pred CcceeEEEEecCccchh----------------hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecc
Confidence 46788887776544321 2234677899999999999 56677776542 247899987
Q ss_pred CCCce------eeeeeee-cCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCce-eEEee-----CCCCCeEEEEe
Q 001534 439 PTGEL------RQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFE-----GHEAPVYSVCP 505 (1058)
Q Consensus 439 ~~~~~------~~~~~~~-~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~-~~~l~-----~~~~~v~~~~~ 505 (1058)
..... .....+. .+-+.|.|+.|.|++. .+++-. |..|.+|++..+.. +..+. ++....++-+|
T Consensus 102 e~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~--klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~W 178 (370)
T KOG1007|consen 102 EPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD--KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAW 178 (370)
T ss_pred cccCccccchhhHhhcCCHHHhCceeeEEEcCCCC--eeEEec-cCceEEEEcccCcchheeecccccccccceeccccc
Confidence 54221 1122232 4556899999999998 566655 88999999988765 33332 25667788899
Q ss_pred cccCCccEEEEEeCCCeEEEEeCCCCCceEEe-cCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCC-CceeEee
Q 001534 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTY 583 (1058)
Q Consensus 506 ~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~ 583 (1058)
+|..+|+.+++.+ |+++..||+++..+...+ ..|+..|..+.|+|+.+++++.+. .|+.|++||.+. ..++..+
T Consensus 179 spHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g---DdgyvriWD~R~tk~pv~el 254 (370)
T KOG1007|consen 179 SPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG---DDGYVRIWDTRKTKFPVQEL 254 (370)
T ss_pred CCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC---CCccEEEEeccCCCcccccc
Confidence 9988888777664 899999999998877655 457789999999999887665442 388999999985 4588888
Q ss_pred cCCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEECCCCc-----------------------------eEEEEecCCCCC
Q 001534 584 SGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMN-----------------------------MLTTVDADGGLP 633 (1058)
Q Consensus 584 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~~ 633 (1058)
.+|.. .+.++.|+|.. +.++++|.|..|.+|...+-. .+.++. .+..
T Consensus 255 ~~HsH-WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd--ehED 331 (370)
T KOG1007|consen 255 PGHSH-WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD--EHED 331 (370)
T ss_pred CCCce-EEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccc--cccc
Confidence 98887 89999999965 466779999999999864321 111222 3345
Q ss_pred CcceEEEeC-CCCEEEEEECCCcEEEEECC
Q 001534 634 ASPRLRFNK-EGSLLAVTTSDNGIKILANS 662 (1058)
Q Consensus 634 ~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 662 (1058)
.|++++||. |.=.+|+-+.||.+.|=.+.
T Consensus 332 SVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 332 SVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 799999997 55567888999999886553
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-14 Score=140.19 Aligned_cols=240 Identities=10% Similarity=0.102 Sum_probs=185.3
Q ss_pred CcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCC--cEEEEEcC
Q 001534 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVV 485 (1058)
Q Consensus 408 ~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~--~v~vwd~~ 485 (1058)
...+..+.|+.|...|..|+.|| -++|....-.... ........|..+-|+. . ++|..+.+. .+++.+.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSS--S--LvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSS--S--LVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeeccc--c--eeEEEecCCCceEEEEEcc
Confidence 44577788999999999999998 5778776543211 1112233466666764 3 455444443 59999998
Q ss_pred CCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCC---CCcEEEEEEcCCCCEEEEEecC
Q 001534 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP---GNWCTMMAYSADGTRLFSCGTS 562 (1058)
Q Consensus 486 ~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~ 562 (1058)
.+..+..+. ....|.++.++. +.|+++-.+. |++||+++.+.+.++... ...+.++.+++.+.+++.-+.
T Consensus 77 k~~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s- 149 (391)
T KOG2110|consen 77 KKTTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS- 149 (391)
T ss_pred cCceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC-
Confidence 888877765 556788888763 4565555544 999999998888766543 335666666777778886643
Q ss_pred CCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCe-EEEEECCCCceEEEEecCCCCCCcceEEEe
Q 001534 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1058)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 641 (1058)
...|.|++||..+-+.+..+..|.+ .+.+++|+++|.+++++++.|+ |||+.+.+|+.+..+........|.+++|+
T Consensus 150 -~t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 150 -TTSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred -CCCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 2367799999999999999999988 8999999999999999999887 799999999999999766556678999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCC
Q 001534 642 KEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 642 ~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
|++++|++.+..++|++|.+...
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCeEEEecCCCeEEEEEeccc
Confidence 99999999999999999998754
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-14 Score=156.63 Aligned_cols=318 Identities=11% Similarity=0.145 Sum_probs=203.1
Q ss_pred CCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCC
Q 001534 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1058)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1058)
+++.|.+.|..+.+.+.++..... ....+.|+|||+++++++.||.|.++|+.+++.+.++.... ...++++++||
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---~~~~i~~s~DG 89 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---NPRGIAVSPDG 89 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS---EEEEEEE--TT
T ss_pred CCCEEEEEECCCCeEEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC---CcceEEEcCCC
Confidence 478899999999999999987554 34557899999999999999999999999999999987653 35789999999
Q ss_pred CEEEEEE-CCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccc
Q 001534 645 SLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1058)
Q Consensus 645 ~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1058)
++++++. .++.+.++|..+. +.++.+......
T Consensus 90 ~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~---------------------------------------------- 122 (369)
T PF02239_consen 90 KYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMP---------------------------------------------- 122 (369)
T ss_dssp TEEEEEEEETTEEEEEETTT---EEEEEE--EE-----------------------------------------------
T ss_pred CEEEEEecCCCceeEeccccc-cceeeccccccc----------------------------------------------
Confidence 9998776 5899999999887 444444322110
Q ss_pred ccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeec-cceEEEEEcc
Q 001534 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-NAVHKLWKWQ 802 (1058)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~vw~~~ 802 (1058)
......++.++..+|....++..-. .+.+.+-|+.
T Consensus 123 --------------------------------------------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~ 158 (369)
T PF02239_consen 123 --------------------------------------------VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS 158 (369)
T ss_dssp --------------------------------------------TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred --------------------------------------------ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence 0002346677888888885555544 4766665543
Q ss_pred cCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe--CCeEEEEECCCceEEEEecC-
Q 001534 803 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS- 879 (1058)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s--dg~i~iwd~~~~~~~~~~~~- 879 (1058)
.. .......+.. ........|+|++++++++. .+.|-++|.++++....+..
T Consensus 159 d~---------------------~~~~~~~i~~----g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g 213 (369)
T PF02239_consen 159 DP---------------------KNLKVTTIKV----GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTG 213 (369)
T ss_dssp TS---------------------SCEEEEEEE------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S
T ss_pred cc---------------------cccceeeecc----cccccccccCcccceeeecccccceeEEEeeccceEEEEeecc
Confidence 21 0011111111 44567899999999988775 68899999999988776542
Q ss_pred ---CCCCeEEEEEeCC---------CCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEE----e
Q 001534 880 ---PPPAATFLAFHPQ---------DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS----G 943 (1058)
Q Consensus 880 ---~~~~i~~l~~s~~---------~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~----s 943 (1058)
|......+ .+|. .+....+.-....+.+||..+.+.++.+.....+ .-+..+|+++++... .
T Consensus 214 ~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~ 291 (369)
T PF02239_consen 214 KKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNP 291 (369)
T ss_dssp SSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-S
T ss_pred ccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCC
Confidence 33333322 1221 2222222222335667888899999999887776 778889999999987 4
Q ss_pred CCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEE---eCCeEEEEeC-CCCeeeEEe
Q 001534 944 ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV---HESQISVYDS-KLECSRSVS 1011 (1058)
Q Consensus 944 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~---~d~~i~vwd~-~~~~~~~~~ 1011 (1058)
..++|.++|.++.+.... +....+ ..+..+.|++||+++.++ .++.|.|||. +.+.+..+.
T Consensus 292 ~~~~v~viD~~tl~~~~~--i~~~~~-----~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 292 DADTVQVIDKKTLKVVKT--ITPGPG-----KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp SHT-EEEEECCGTEEEE---HHHHHT-------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCceEEEEECcCcceeEE--EeccCC-----CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 558899999999753322 111111 237899999999988875 3448999999 998888886
|
... |
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-16 Score=149.14 Aligned_cols=216 Identities=19% Similarity=0.343 Sum_probs=163.4
Q ss_pred ccceeEeec--CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEE
Q 001534 336 TKTVVRTLN--QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1058)
Q Consensus 336 ~~~~~~~~~--h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 413 (1058)
+-+++..++ +-+.|.|+.|.|++..+++. .|..|.+|++..+..+.. ++ ....-.+|....++
T Consensus 111 tlE~v~~Ldteavg~i~cvew~Pns~klasm--~dn~i~l~~l~ess~~va-ev------------~ss~s~e~~~~fts 175 (370)
T KOG1007|consen 111 TLECVASLDTEAVGKINCVEWEPNSDKLASM--DDNNIVLWSLDESSKIVA-EV------------LSSESAEMRHSFTS 175 (370)
T ss_pred hhhHhhcCCHHHhCceeeEEEcCCCCeeEEe--ccCceEEEEcccCcchhe-ee------------cccccccccceecc
Confidence 344555565 55699999999999864433 489999999998876321 11 01111236777889
Q ss_pred EEECC--CCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCC-Ccee
Q 001534 414 CVWGP--DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQ 490 (1058)
Q Consensus 414 ~~~sp--d~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~-~~~~ 490 (1058)
-+||| ||..+++. .|+++..||+++..+...+ -.+|...|..+.|+|+-+. +|++|+.||.|++||.+. ..++
T Consensus 176 g~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv 251 (370)
T KOG1007|consen 176 GAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPV 251 (370)
T ss_pred cccCCCCccceEEEe-CCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccc
Confidence 99999 78888876 6789999999987765533 2478889999999998877 899999999999999976 5678
Q ss_pred EEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCC-----------------------------CceEEecCCC
Q 001534 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-----------------------------GSRVDYDAPG 541 (1058)
Q Consensus 491 ~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~-----------------------------~~~~~~~~~~ 541 (1058)
+++.+|...|+++.|+|..+ +++++++.|..|.+|....- +.+.++..|.
T Consensus 252 ~el~~HsHWvW~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE 330 (370)
T KOG1007|consen 252 QELPGHSHWVWAVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE 330 (370)
T ss_pred cccCCCceEEEEEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc
Confidence 89999999999999999876 89999999999999964321 1122456677
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCCceEEEeeC
Q 001534 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1058)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1058)
..|++++||.-..++++.-. -||++.|=.+
T Consensus 331 DSVY~~aWSsadPWiFASLS---YDGRviIs~V 360 (370)
T KOG1007|consen 331 DSVYALAWSSADPWIFASLS---YDGRVIISSV 360 (370)
T ss_pred cceEEEeeccCCCeeEEEec---cCceEEeecC
Confidence 88999999987777664432 2666665443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-14 Score=159.21 Aligned_cols=267 Identities=14% Similarity=0.188 Sum_probs=175.8
Q ss_pred CCCcceecCCc-cccceeEeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccC-ccccccCcceeeccccccccccc
Q 001534 324 AHTPNVYSQDD-LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQN 401 (1058)
Q Consensus 324 ~~~~~~~~~~~-~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 401 (1058)
++.+.+|..+. ...+.+.++.+.+....++++||++.+++++..++.|.+|++.. ++......
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~--------------- 75 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE--------------- 75 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee---------------
Confidence 45566666642 23346677777778899999999986555555689999999973 32211000
Q ss_pred ccccCCCcCeEEEEECCCCCEEEEEeC-CCeEEEEEecCCCce-eeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcE
Q 001534 402 ALLNDAAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1058)
Q Consensus 402 ~~~~~h~~~v~~~~~spd~~~l~~~~~-d~~i~vwd~~~~~~~-~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v 479 (1058)
....+....++|+|++++|++++. ++.|.+|++++...+ .....+. +.....+++|+|+++. ++++...++.|
T Consensus 76 ---~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~-l~v~~~~~~~v 150 (330)
T PRK11028 76 ---SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRT-LWVPCLKEDRI 150 (330)
T ss_pred ---ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCE-EEEeeCCCCEE
Confidence 012234678999999999888764 889999999753222 1111222 3345677899999985 45666778999
Q ss_pred EEEEcCCCceeE-------EeeCCCCCeEEEEecccCCccEEEEEeC-CCeEEEEeCCCC--Cc--eEEecCC------C
Q 001534 480 KVWDVVAGRKQY-------TFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYL--GS--RVDYDAP------G 541 (1058)
Q Consensus 480 ~vwd~~~~~~~~-------~l~~~~~~v~~~~~~~~~~~~~l~s~s~-d~~i~~wd~~~~--~~--~~~~~~~------~ 541 (1058)
.+||+.+...+. ... .......++|+| +|++++++.. +++|.+|+++.. .. ...+... .
T Consensus 151 ~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~p--dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~ 227 (330)
T PRK11028 151 RLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHP--NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT 227 (330)
T ss_pred EEEEECCCCcccccCCCceecC-CCCCCceEEECC--CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence 999997633221 111 123456788885 5578877776 899999999742 21 1122211 1
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCc----eeEeecCCCCCceeEEEEcCCCCEEEEEe-CCCeEEEEE
Q 001534 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWD 616 (1058)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd 616 (1058)
.....+.++|++++++++.. .++.|.+|++.... .+...... .....+.++|+|++|+++. .+++|.+|+
T Consensus 228 ~~~~~i~~~pdg~~lyv~~~---~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 228 RWAADIHITPDGRHLYACDR---TASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred ccceeEEECCCCCEEEEecC---CCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 13346889999999998743 46789999986433 22222221 1345789999999999877 489999998
Q ss_pred CC
Q 001534 617 MD 618 (1058)
Q Consensus 617 ~~ 618 (1058)
++
T Consensus 303 ~~ 304 (330)
T PRK11028 303 ID 304 (330)
T ss_pred Ec
Confidence 75
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.4e-15 Score=146.01 Aligned_cols=298 Identities=14% Similarity=0.159 Sum_probs=215.9
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCC------CCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCC
Q 001534 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES------EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF 610 (1058)
Q Consensus 537 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 610 (1058)
+..|.+.|.++.|+.++++|++|+. +..+++|++. +.+++.....|+...|.|++|...+.++++|+.++
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGD----D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGD----DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCC----cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 4568889999999999999999984 7789999975 34566655555645899999999999999999999
Q ss_pred eEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCC
Q 001534 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1058)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1058)
+|...|+++.+.+..+......+.|+.+..+|-.+.+++.+.++.|.+||..........+ .
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-------~----------- 189 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV-------L----------- 189 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee-------e-----------
Confidence 9999999999999888777666789999999999999999999999999986542111000 0
Q ss_pred ccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCc
Q 001534 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 770 (1058)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~ 770 (1058)
+. .
T Consensus 190 -------------------------------------------------------------~A----------------N 192 (609)
T KOG4227|consen 190 -------------------------------------------------------------PA----------------N 192 (609)
T ss_pred -------------------------------------------------------------ec----------------C
Confidence 00 0
Q ss_pred CcCceEEEEEccCCce-EEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEc
Q 001534 771 AASKVVRLIYTNSGLS-LLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1058)
Q Consensus 771 ~~~~i~~l~~s~~g~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s 849 (1058)
.......+.|.|.... |++.++.+-+-+||+.....+. +...-..- +.. . ...-.++.|+
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~------------~~~~~~~~----L~~--~-~~~~M~~~~~ 253 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPV------------YQRSMFKG----LPQ--E-NTEWMGSLWS 253 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeeccccchH------------Hhhhcccc----Ccc--c-chhhhheeeC
Confidence 1223456677776554 4555666888899876432211 11000000 110 1 2334678899
Q ss_pred cCCcEEEEEe-CCeEEEEECCCceEEEEecCCC-------CCeEEEEEeCCCCCEEEEEeCCCeEEEEEccc-----c--
Q 001534 850 KNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-------PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-----D-- 914 (1058)
Q Consensus 850 ~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~-------~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~-----~-- 914 (1058)
|+|..+.+-- ...-.+||+.+.++..--..|. ..+.+++|.. ...+++|+++-.|++|.+.. |
T Consensus 254 ~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G~~ 331 (609)
T KOG4227|consen 254 PSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYGFT 331 (609)
T ss_pred CCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeec--ceeeeccCcccceEEEecCCCccccCcc
Confidence 9999887766 3446678887755433222232 2477888985 45599999999999998742 1
Q ss_pred ----------------eeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001534 915 ----------------EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 954 (1058)
Q Consensus 915 ----------------~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~ 954 (1058)
+.+..|+||..-+..+.|+|...+|++.+-.+.++||.--
T Consensus 332 ~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 332 QIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 1245789999999999999999999999999999999654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-15 Score=166.14 Aligned_cols=303 Identities=17% Similarity=0.282 Sum_probs=211.1
Q ss_pred CeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCC---CCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCC
Q 001534 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH---EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1058)
Q Consensus 455 ~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~---~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~ 531 (1058)
+-..+.|+|-.. .++++...-.|+|||.+.++.+..|..+ ...|+.+++-...|..++++++.||.||+|+--..
T Consensus 1066 ~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 456788888888 6888887779999999999998877654 35788998877777889999999999999953211
Q ss_pred CceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCe
Q 001534 532 GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ 611 (1058)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 611 (1058)
. | ....++++. ..-++. ..+..+ .-..+.|.....+|+++|+-..
T Consensus 1144 ~----------------~--~~~eLVTaw------------~~Ls~~----~~~~r~-~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1144 K----------------W--KKPELVTAW------------SSLSDQ----LPGARG-TGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred c----------------c--CCceeEEee------------cccccc----CccCCC-CCeeeehhhhCCeEEecCCeeE
Confidence 0 0 122333332 111111 111122 1134667777778888888899
Q ss_pred EEEEECCCCceEEEEecCCCCCCcceEEEe-CCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCC
Q 001534 612 IKFWDMDNMNMLTTVDADGGLPASPRLRFN-KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1058)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1058)
|+|||.........+..... ..++++.-+ +.|+.+++|..||.|++||.......
T Consensus 1189 IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d----------------------- 1244 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD----------------------- 1244 (1387)
T ss_pred EEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCcc-----------------------
Confidence 99999998888888766543 345665544 35799999999999999998644110
Q ss_pred ccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCc
Q 001534 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 770 (1058)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~ 770 (1058)
..|.+|.-
T Consensus 1245 ------------------------------------------------------s~v~~~R~------------------ 1252 (1387)
T KOG1517|consen 1245 ------------------------------------------------------SLVCVYRE------------------ 1252 (1387)
T ss_pred ------------------------------------------------------ccceeecc------------------
Confidence 11222221
Q ss_pred CcCc--eEEEEEccCCce-EEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCC--CCCeeE
Q 001534 771 AASK--VVRLIYTNSGLS-LLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT--EESAAC 845 (1058)
Q Consensus 771 ~~~~--i~~l~~s~~g~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~~i~~ 845 (1058)
|... |..+.+.+.|-. |++++.+|.|++||++.... . . .+....|. .+..++
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e------------------~----~~~iv~~~~yGs~lTa 1309 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-E------------------T----FLTIVAHWEYGSALTA 1309 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-c------------------c----cceeeeccccCcccee
Confidence 3333 788888886655 99999999999999875210 0 0 00000010 235899
Q ss_pred EEEccCCcEEEEEeCCeEEEEECCCceEEEEecCC-------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccce
Q 001534 846 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSP-------PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915 (1058)
Q Consensus 846 ~~~s~d~~~la~~sdg~i~iwd~~~~~~~~~~~~~-------~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~ 915 (1058)
+..+++...+|+|+.+.|+||++. |+.+..++.+ .+.+.|++|+| -.-++|+|+.|.+|.||.....+
T Consensus 1310 l~VH~hapiiAsGs~q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1310 LTVHEHAPIIASGSAQLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eeeccCCCeeeecCcceEEEEecC-hhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 999999999999999999999996 5555444432 35689999999 88899999999999999876543
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-15 Score=142.60 Aligned_cols=260 Identities=13% Similarity=0.236 Sum_probs=184.8
Q ss_pred ceecCCcccccee--EeecCCCCeeEEEEecCCC----eEEEEEeCCCcEEEEEccCccccccCcceeeccccccccccc
Q 001534 328 NVYSQDDLTKTVV--RTLNQGSNVMSMDFHPQQQ----TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQN 401 (1058)
Q Consensus 328 ~~~~~~~~~~~~~--~~~~h~~~V~~~~fspdg~----~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1058)
.+...+....+.+ .+++|.-+++.+.|.|+.. .+||+. +..+++|.+...+...... ..+..
T Consensus 76 qiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~----------~~L~~ 143 (364)
T KOG0290|consen 76 QIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQ----------SVLNN 143 (364)
T ss_pred EEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehh----------hhhcc
Confidence 3333444444433 4468999999999999873 477765 4589999998532211000 01111
Q ss_pred ccccCCCcCeEEEEECC-CCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEE
Q 001534 402 ALLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1058)
Q Consensus 402 ~~~~~h~~~v~~~~~sp-d~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~ 480 (1058)
..-..+.+++++..|+. |-+++.+++-|-+..|||++++........+-+|...|.+++|...+.. ++++.+.||+|+
T Consensus 144 ~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvR 222 (364)
T KOG0290|consen 144 NKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVR 222 (364)
T ss_pred CcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEE
Confidence 22345778999999998 7889999999999999999997443334467799999999999998777 899999999999
Q ss_pred EEEcCCCcee---EEeeCCCCCeEEEEecccCCccEEEEEeCC-CeEEEEeCCCCCc-eEEecCCCCcEEEEEEcCCC-C
Q 001534 481 VWDVVAGRKQ---YTFEGHEAPVYSVCPHHKESIQFIFSTAID-GKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADG-T 554 (1058)
Q Consensus 481 vwd~~~~~~~---~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d-~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~ 554 (1058)
++|++..+.- ..-.....+...++|++.. -+++++-..| ..|.+.|++.... ...+..|.+.|+.++|.|.. .
T Consensus 223 mFDLR~leHSTIIYE~p~~~~pLlRLswnkqD-pnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~ 301 (364)
T KOG0290|consen 223 MFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD-PNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSS 301 (364)
T ss_pred EEEecccccceEEecCCCCCCcceeeccCcCC-chHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCc
Confidence 9999875432 2222224577888888653 3677776655 5699999998665 45789999999999999965 5
Q ss_pred EEEEEecCCCCCceEEEeeCCCCc------eeEeecCCCCCceeEEEEcCC-CCEEEEEe
Q 001534 555 RLFSCGTSKEGESHLVEWNESEGA------IKRTYSGFRKRSLGVVQFDTT-RNRFLAAG 607 (1058)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~ 607 (1058)
.+.+++. |.+..+||+.+.- ++..+. .++.|+.+.|++. +..++.+.
T Consensus 302 hictaGD----D~qaliWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 302 HICTAGD----DCQALIWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred eeeecCC----cceEEEEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEe
Confidence 6667763 8889999997532 222333 2236899999864 44555544
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-14 Score=164.96 Aligned_cols=256 Identities=13% Similarity=0.091 Sum_probs=183.9
Q ss_pred ccCCCcCeEEEEECCCC-CEEEEEeCCCeEEEEEecCC----CceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCc
Q 001534 404 LNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPT----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~-~~l~~~~~d~~i~vwd~~~~----~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~ 478 (1058)
+..|...|..++.++.. .++++||.||+|++|+...- ...+...++.....++.++.+.+.++ .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 66788999999988754 99999999999999998642 22333334444567899999999999 7899999999
Q ss_pred EEEEEcCCC--c-----eeEEeeC-CCCCeEEE-EecccCCccEEEEEeCCCeEEEEeCCCCCceEE--ecCCCCcEEEE
Q 001534 479 IKVWDVVAG--R-----KQYTFEG-HEAPVYSV-CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YDAPGNWCTMM 547 (1058)
Q Consensus 479 v~vwd~~~~--~-----~~~~l~~-~~~~v~~~-~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~--~~~~~~~v~~~ 547 (1058)
|++.++... + +.+.... ..+.+.++ ++........++.+..-+.|..||.+....... .....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998762 2 1111111 22334443 343322224788888899999999988766554 34456799999
Q ss_pred EEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCC---CCEEEEEe--CCCeEEEEECCCCce
Q 001534 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT---RNRFLAAG--DEFQIKFWDMDNMNM 622 (1058)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~--~dg~i~iwd~~~~~~ 622 (1058)
+.+|.+.+++.|+. .|.+.+||++-+.++.++......++..++.+|- ....++++ ..+.|.+|++.+|..
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999974 7889999999998888877655557777776653 34555544 578899999999876
Q ss_pred EEEEecCCCC-----------------CCcceEEEeCCCCEEEEEECCCcEEEEECCCCc
Q 001534 623 LTTVDADGGL-----------------PASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1058)
Q Consensus 623 ~~~~~~~~~~-----------------~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 665 (1058)
...+...... .......+.-.+..+.+|+.|..||.||.....
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 6665433110 011223333456688999999999999987663
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-14 Score=161.21 Aligned_cols=250 Identities=15% Similarity=0.151 Sum_probs=185.3
Q ss_pred CCcCeEEEEECC-CCCEEEEEeCCCeEEEEEecCCCce--ee-eeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEE
Q 001534 407 AAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGEL--RQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1058)
Q Consensus 407 h~~~v~~~~~sp-d~~~l~~~~~d~~i~vwd~~~~~~~--~~-~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vw 482 (1058)
-...|+|+.|+| +..++|.|..+|.|.+||+..+... .. ......|..+++.+.|..+....-+++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 567899999999 6678888899999999999987652 11 1123368899999999876542248999999999999
Q ss_pred EcCCCce------eEEee------CCCCCeEEEEecccCCccEEEEEeCCCeEEEEe---CCCCC-----ceEEecCCCC
Q 001534 483 DVVAGRK------QYTFE------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL---YDYLG-----SRVDYDAPGN 542 (1058)
Q Consensus 483 d~~~~~~------~~~l~------~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd---~~~~~-----~~~~~~~~~~ 542 (1058)
+++.-.. ..... .-...++++.|.+... ..++.|+++|.|..-+ .+... ....+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8764322 11111 1234688889987654 7899999999988733 22222 1225566788
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCCceEEEeeCC-CCceeEeecCCCCCceeEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Q 001534 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 620 (1058)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1058)
.|+++.++|-+..++..+ +|.++++|... ...++..+..+.. .+.+++|||... .|+++..||.+.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~----gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSV----GDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeee----ccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 999999999887766554 38889999987 5667777776666 699999999765 5566778999999998754
Q ss_pred c--eEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001534 621 N--MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 621 ~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
. ++.+.... ....+.+.|++.|+.|++|...|++.+|++...
T Consensus 475 ~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 3 34444333 345678889999999999999999999999644
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-14 Score=147.12 Aligned_cols=200 Identities=17% Similarity=0.267 Sum_probs=141.6
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecc
Q 001534 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1058)
Q Consensus 592 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 671 (1058)
.+++|+++|..+++++.||++|+|+..+...+.....+.. .|.++.|+|||+.|++.+.| ..+||+.+++ ..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~--eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHA--EVKDLDFSPDGKFLASIGAD-SARVWSVNTG-AALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcC--ccccceeCCCCcEEEEecCC-ceEEEEeccC-chhhhc
Confidence 6799999999999999999999999877666665555443 79999999999999999999 9999999988 222211
Q ss_pred cCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccc
Q 001534 672 EGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWR 751 (1058)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~ 751 (1058)
....
T Consensus 224 t~~~---------------------------------------------------------------------------- 227 (398)
T KOG0771|consen 224 TPFS---------------------------------------------------------------------------- 227 (398)
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 1000
Q ss_pred cCCcCCccceeEEecCCCcCcCceEEEEEccCC---c-eEEE-eeccceEEEEEcccCCCCCCCcccccccccccCCCCC
Q 001534 752 IPDISDPSQIKALRLPDSIAASKVVRLIYTNSG---L-SLLA-LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSG 826 (1058)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g---~-~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (1058)
.......+.|+.|+ . ++++ ....+.++.|++. +|+-..-
T Consensus 228 -------------------k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~-----------------~w~~~~~ 271 (398)
T KOG0771|consen 228 -------------------KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDIS-----------------LWSGSNF 271 (398)
T ss_pred -------------------cchhhhhceecccCCCceEEEEEecCCCCceeEEEee-----------------eeccccc
Confidence 00111122233332 1 1222 2223555555542 3333211
Q ss_pred CccccccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEECCCceEEEEec-CCCCCeEEEEEeCCCCCEEEEEeCCC
Q 001534 827 TLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFM-SPPPAATFLAFHPQDNNIIAIGMEDS 904 (1058)
Q Consensus 827 ~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~~lasg~~dg 904 (1058)
-........ ...|++++.|+||+++|.|+ ||.|-|++..+.+.+...+ .|...|+.+.|+| +.+++++.+.|.
T Consensus 272 l~~~~~~~~----~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~ 346 (398)
T KOG0771|consen 272 LRLRKKIKR----FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDN 346 (398)
T ss_pred cchhhhhhc----cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCC
Confidence 111111222 56899999999999999999 9999999999988777664 5889999999999 999999999998
Q ss_pred eEEEEEcc
Q 001534 905 SVQIYNVR 912 (1058)
Q Consensus 905 ~I~iwd~~ 912 (1058)
++.+..+.
T Consensus 347 ~~~v~~l~ 354 (398)
T KOG0771|consen 347 EAAVTKLA 354 (398)
T ss_pred ceeEEEEe
Confidence 88887765
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=134.96 Aligned_cols=248 Identities=13% Similarity=0.118 Sum_probs=170.0
Q ss_pred ceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCc
Q 001534 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 853 (1058)
Q Consensus 774 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~ 853 (1058)
.|.+-+++|.+++|+++..+|.|-+..+..-... . ....|+... +...+| .++++.++|. ..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~---s----------a~~~gk~~i--v~eqah-dgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG---S----------AEPPGKLKI--VPEQAH-DGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc---c----------cCCCCCcce--eecccc-CCCeeeeeee--hh
Confidence 4556688999999999999999999887532110 0 011222222 122348 9999999998 56
Q ss_pred EEEEEeCCeEEEEECCCceE------EEEec-------CCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEE
Q 001534 854 YVMSASGGKVSLFNMMTFKV------MTMFM-------SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920 (1058)
Q Consensus 854 ~la~~sdg~i~iwd~~~~~~------~~~~~-------~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l 920 (1058)
+|.+++||.|+-|....... +.... ..-.+|+++-+.|..+.+ ..++.|+.++-||+++|+...++
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi-~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI-LFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE-EEecCCeEEEEEEecCCEEEEEE
Confidence 88888899999987653211 11111 123578999999945544 45569999999999999999999
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEEeCCeEEEE
Q 001534 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVY 1000 (1058)
Q Consensus 921 ~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~~d~~i~vw 1000 (1058)
+||++-|.++.--.....+.||++||++|+||..+++.++..-.........+.-.-.-.+..-+..+|+.|....+.+|
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslw 232 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLW 232 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEE
Confidence 99999999999855566789999999999999999887654221111100000001122455667788999888899999
Q ss_pred eC-CCCeeeEEee-ccccceEEccCCcEEEEEECCCeEEEEcCC
Q 001534 1001 DS-KLECSRSVSF-LSLCPYVFGVSSIFLLSTLTKLSVAVHDPL 1042 (1058)
Q Consensus 1001 d~-~~~~~~~~~~-~~~~~~~~s~~~~~l~~~~~d~~v~vw~~~ 1042 (1058)
++ ..++...+.. ..+..+.| +.+.+++++....|.-|.+.
T Consensus 233 hLrsse~t~vfpipa~v~~v~F--~~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 233 HLRSSESTCVFPIPARVHLVDF--VDDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred eccCCCceEEEecccceeEeee--ecceEEEeccccceeeeeec
Confidence 99 7777666655 33554555 44567777766667666543
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.9e-15 Score=163.40 Aligned_cols=292 Identities=13% Similarity=0.158 Sum_probs=206.6
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC--CCCEEE
Q 001534 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLG 424 (1058)
Q Consensus 347 ~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--d~~~l~ 424 (1058)
.+-..+.|+|-.+ .++++...-.|+|||.+.++.+..+.- -......|+.+.+-. |..+++
T Consensus 1065 ~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n----------------~~~~~t~Vs~l~liNe~D~aLlL 1127 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDN----------------GAFPDTRVSDLELINEQDDALLL 1127 (1387)
T ss_pred CCCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccC----------------CCCCCCccceeeeecccchhhee
Confidence 3567788999887 566666667999999999987653211 012345688888866 566899
Q ss_pred EEeCCCeEEEEEecCC-----CceeeeeeeecCc----CCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeC
Q 001534 425 VAFSKHIVHLYTYNPT-----GELRQHLEIDAHV----GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1058)
Q Consensus 425 ~~~~d~~i~vwd~~~~-----~~~~~~~~~~~h~----~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~ 495 (1058)
+|+.||.|+||+--.. +.+.....+.++. +.-.-+.|..... +|+++|.-..|+|||+.....++.+..
T Consensus 1128 tas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~diP~ 1205 (1387)
T KOG1517|consen 1128 TASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVADIPY 1205 (1387)
T ss_pred eeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEeeccc
Confidence 9999999999974322 1222222222221 1123456766655 566677688999999988888877654
Q ss_pred -CCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCc---eEEecCCCCc--EEEEEEcCCCCE-EEEEecCCCCCce
Q 001534 496 -HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNW--CTMMAYSADGTR-LFSCGTSKEGESH 568 (1058)
Q Consensus 496 -~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~---~~~~~~~~~~--v~~~~~s~~~~~-l~~~~~~~~~~~~ 568 (1058)
....|+++.-+-. .|+.+++|..||.|++||.+.... +.....|... |..+.+.+.|-. |++++. +|.
T Consensus 1206 ~s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~----~G~ 1280 (1387)
T KOG1517|consen 1206 GSSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ----DGD 1280 (1387)
T ss_pred CCCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc----CCe
Confidence 4456777765443 368999999999999999987544 3455666665 999999887655 888874 777
Q ss_pred EEEeeCCCCceeE--eecCCC--CCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecC-----CCCCCcceEE
Q 001534 569 LVEWNESEGAIKR--TYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----GGLPASPRLR 639 (1058)
Q Consensus 569 i~~wd~~~~~~~~--~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~ 639 (1058)
|++||++...... ....|. +...+++..+++...+++|+. +.|+||++.. +.+..+..+ ...+.+.|++
T Consensus 1281 I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~ 1358 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLA 1358 (1387)
T ss_pred EEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceee
Confidence 9999999742221 222222 224889999999999999988 9999999874 444433322 1234678999
Q ss_pred EeCCCCEEEEEECCCcEEEEECCCC
Q 001534 640 FNKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 640 ~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
|+|..-.+|+|+.|..|.||....+
T Consensus 1359 FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1359 FHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ecchhHhhhhccCCceEEEeecCCc
Confidence 9999999999999999999987655
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-16 Score=170.74 Aligned_cols=286 Identities=14% Similarity=0.223 Sum_probs=222.1
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEE
Q 001534 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 615 (1058)
Q Consensus 536 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 615 (1058)
.+.+|...|+|+.|...|.++++++. +..++||...++.+.....||.+ .++.++.+.+..++++++.|..|++|
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsd----d~lvKiwS~et~~~lAs~rGhs~-ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSD----DRLVKIWSMETARCLASCRGHSG-DITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCc----cceeeeeeccchhhhccCCCCcc-ccchhccchhhhhhhhcccCceEEEE
Confidence 45678889999999999999999974 88899999999999999999998 89999999998899999999999999
Q ss_pred ECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccc
Q 001534 616 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINA 695 (1058)
Q Consensus 616 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1058)
.+..+.++..+.+|.+ .|++++|+|-. +.+.||++++||..-. .. .....+.
T Consensus 260 rl~~~~pvsvLrghtg--avtaiafsP~~----sss~dgt~~~wd~r~~--~~-~y~prp~------------------- 311 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTG--AVTAIAFSPRA----SSSDDGTCRIWDARLE--PR-IYVPRPL------------------- 311 (1113)
T ss_pred ecCCCchHHHHhcccc--ceeeeccCccc----cCCCCCceEecccccc--cc-ccCCCCC-------------------
Confidence 9999999999987765 79999999965 7788999999998511 00 0000000
Q ss_pred cCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCce
Q 001534 696 LGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKV 775 (1058)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i 775 (1058)
+. .....+
T Consensus 312 -------------------------------------------------------~~-----------------~~~~~~ 319 (1113)
T KOG0644|consen 312 -------------------------------------------------------KF-----------------TEKDLV 319 (1113)
T ss_pred -------------------------------------------------------Cc-----------------ccccce
Confidence 00 022345
Q ss_pred EEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCc-E
Q 001534 776 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS-Y 854 (1058)
Q Consensus 776 ~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~-~ 854 (1058)
.++.|...+..+++++.|+....|.+.. ..| + ...+.-+.++.|-. +
T Consensus 320 ~s~~~~~~~~~f~Tgs~d~ea~n~e~~~---------------l~~----------------~-~~~lif~t~ssd~~~~ 367 (1113)
T KOG0644|consen 320 DSILFENNGDRFLTGSRDGEARNHEFEQ---------------LAW----------------R-SNLLIFVTRSSDLSSI 367 (1113)
T ss_pred eeeeccccccccccccCCcccccchhhH---------------hhh----------------h-ccceEEEecccccccc
Confidence 5667777888889999998887775431 011 1 22222333333332 4
Q ss_pred EEEEe-CCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEE-eCCCCCeEEEEE
Q 001534 855 VMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITGLAF 932 (1058)
Q Consensus 855 la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l-~~h~~~v~~l~~ 932 (1058)
.+++- +-.+.+|++.+|.+.+.+.+|...+..+.++|.+.++..+++.||...|||+-.|..++.. .+| +.+..-+|
T Consensus 368 ~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kF 446 (1113)
T KOG0644|consen 368 VVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKF 446 (1113)
T ss_pred ceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeecccc
Confidence 44443 7789999999999999999999999999999988888889999999999999988776654 455 45666799
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCccc
Q 001534 933 SPTLNALVSSGADAQLCMWSIDKWEKL 959 (1058)
Q Consensus 933 spd~~~l~s~s~D~~i~iwd~~~~~~~ 959 (1058)
|+||+.++....-|.+.|.....++..
T Consensus 447 Sqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 447 SQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred CCCCceEecCCCCCceEEeccCCCccc
Confidence 999999998888899999887666544
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.6e-14 Score=151.94 Aligned_cols=331 Identities=12% Similarity=0.105 Sum_probs=200.9
Q ss_pred cEE-EEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCc
Q 001534 512 QFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS 590 (1058)
Q Consensus 512 ~~l-~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 590 (1058)
+++ ++-..++.|.+.|..+.+....+......-..+.++|||+++++++. ++.|.++|+.+++.+.++.... .
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~--~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG--N 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS--E
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC--C
Confidence 444 55667899999999998888888776555556789999999999863 7889999999999999987655 4
Q ss_pred eeEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEecCC-----CCCCcceEEEeCCCCEEEEE-ECCCcEEEEECCC
Q 001534 591 LGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADG-----GLPASPRLRFNKEGSLLAVT-TSDNGIKILANSD 663 (1058)
Q Consensus 591 v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~ 663 (1058)
...+++++||++++++. .++.+.++|.++.+++..+.... ....+..+..+|....++.. -+.+.|.+.|...
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 67899999999999875 78999999999999999886542 12356677778877755544 4457777777654
Q ss_pred CceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccc
Q 001534 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED 743 (1058)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1058)
...+...
T Consensus 160 ~~~~~~~------------------------------------------------------------------------- 166 (369)
T PF02239_consen 160 PKNLKVT------------------------------------------------------------------------- 166 (369)
T ss_dssp SSCEEEE-------------------------------------------------------------------------
T ss_pred cccccee-------------------------------------------------------------------------
Confidence 4111100
Q ss_pred cccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEee-ccceEEEEEcccCCCCCCCcccccccccccC
Q 001534 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALA-SNAVHKLWKWQRTERNPSGKATANVAPQLWQ 822 (1058)
Q Consensus 744 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 822 (1058)
.+. .........|+|++++++++. .+..+-++|..+... +..
T Consensus 167 -------------------~i~-----~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-------------v~~ 209 (369)
T PF02239_consen 167 -------------------TIK-----VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-------------VAL 209 (369)
T ss_dssp -------------------EEE-------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-------------EEE
T ss_pred -------------------eec-----ccccccccccCcccceeeecccccceeEEEeeccceE-------------EEE
Confidence 000 112345678999999876653 456777777543211 011
Q ss_pred CCCCCcccc-ccCCCCCCCCCeeEEEEccCCcEEEE-EeCCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEE
Q 001534 823 PPSGTLMTN-DINESKPTEESAACIALSKNDSYVMS-ASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG 900 (1058)
Q Consensus 823 ~~~~~~~~~-~~~~~~h~~~~i~~~~~s~d~~~la~-~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg 900 (1058)
+..|..... ......| ...-.--+.+..+...++ .+.+.+.+||..+++.++.+....+. ..+..+| +++++.+.
T Consensus 210 i~~g~~p~~~~~~~~ph-p~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd 286 (369)
T PF02239_consen 210 IDTGKKPHPGPGANFPH-PGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVD 286 (369)
T ss_dssp EE-SSSBEETTEEEEEE-TTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE
T ss_pred eeccccccccccccccC-CCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEee
Confidence 111111100 0000002 111111122223333322 23456778999999999999876666 7888899 89999887
Q ss_pred ----eCCCeEEEEEcccceeEEEEeCC-CCCeEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCccccc
Q 001534 901 ----MEDSSVQIYNVRVDEVKTKLKGH-QNRITGLAFSPTLNALVSSGAD--AQLCMWSIDKWEKLKS 961 (1058)
Q Consensus 901 ----~~dg~I~iwd~~~~~~~~~l~~h-~~~v~~l~~spd~~~l~s~s~D--~~i~iwd~~~~~~~~~ 961 (1058)
...++|.++|..+.+.+..+... ...+..+.|++||+++..+..+ +.|.+||..+.+..+.
T Consensus 287 ~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 287 TFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKR 354 (369)
T ss_dssp -TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred ccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Confidence 45579999999999877777532 2358999999999986655433 3699999999886644
|
... |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.5e-15 Score=165.64 Aligned_cols=235 Identities=11% Similarity=0.097 Sum_probs=162.9
Q ss_pred CCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCC---CeEEEEEecCCCcee
Q 001534 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELR 444 (1058)
Q Consensus 368 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d---~~i~vwd~~~~~~~~ 444 (1058)
+..|.+||........ +..|...+.+.+|||||+.|+.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~~--------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQFI--------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCceE--------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 4689999987654221 45678889999999999999987653 479999998865322
Q ss_pred eeeeeecCcCCeEEEEEecCCCceEEEE-EcCCCcEEEE--EcCCCceeEEeeCCCCCeEEEEecccCCccEEEEE-eCC
Q 001534 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVT-CGDDKMIKVW--DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST-AID 520 (1058)
Q Consensus 445 ~~~~~~~h~~~v~~~~fs~d~~~~~l~s-~~~d~~v~vw--d~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~-s~d 520 (1058)
...+.+| ...++|+|||+. |+. .+.+|.+.|| |+.+++ ...+..+...+.+..|+|+ |..|+.+ ..+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~~--La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpD--G~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGSR--LAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPD--GQSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCCE--EEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCC--CCEEEEEECCC
Confidence 1223333 446899999994 554 4567766555 665555 4556667777888999865 4665544 467
Q ss_pred CeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCC
Q 001534 521 GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1058)
Q Consensus 521 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1058)
+...+|+++..........+.. ....|+|||++++..+. ..+.+||+.+++........ ....+.|+|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG 383 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF---LDESPSISPNG 383 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC---CCCCceECCCC
Confidence 8889998765433222222332 46789999999988753 23777999988754332222 23457899999
Q ss_pred CEEEEEeCCCeEEEEEC--CCCceEEEEecCCCCCCcceEEEeCC
Q 001534 601 NRFLAAGDEFQIKFWDM--DNMNMLTTVDADGGLPASPRLRFNKE 643 (1058)
Q Consensus 601 ~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1058)
++++.++.++.+.+|++ .+++....+..+.+ .+...+|+|-
T Consensus 384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 99999998998888875 35777777765443 5778899884
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-14 Score=138.60 Aligned_cols=233 Identities=17% Similarity=0.179 Sum_probs=179.7
Q ss_pred CCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEc-C
Q 001534 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV-V 485 (1058)
Q Consensus 407 h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~-~ 485 (1058)
-..+|+|.+|++|+..+|++.....|.||.....+.....+++..|...|+++.|+|..+ .|++|+.|..-++|.. .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 456899999999999999999999999999998876777779999999999999999998 6999999999999998 3
Q ss_pred CCc--eeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceE----EecCCCCcEEEEEEcCCCCEEEEE
Q 001534 486 AGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSC 559 (1058)
Q Consensus 486 ~~~--~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1058)
.++ +.-.+..++...+++.|+|.+ +.|++||....|.+|-++....-. .-......|.++.|+|++-+++++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 343 344556689999999999766 799999999999999877544321 223345689999999999999999
Q ss_pred ecCCCCCceEEEeeCC-----C-------------CceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 001534 560 GTSKEGESHLVEWNES-----E-------------GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1058)
Q Consensus 560 ~~~~~~~~~i~~wd~~-----~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1058)
+. |+..+++..- . |++..++. ...+.+..+.|+|+|+.|+-.+.|..+.+-|.....
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 85 6667777531 1 22333343 233479999999999999999999999999987665
Q ss_pred -eEEEEecCCCCCCcceEEEeCCCCEEEEE
Q 001534 622 -MLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1058)
Q Consensus 622 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 650 (1058)
.+...... . -+..++.|-.+...++.|
T Consensus 240 ~~v~~~~~~-~-lP~ls~~~ise~~vv~ag 267 (361)
T KOG1523|consen 240 ERVQSVATA-Q-LPLLSVSWISENSVVAAG 267 (361)
T ss_pred hhccchhhc-c-CCceeeEeecCCceeecC
Confidence 23333222 1 255667776655444433
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-12 Score=130.16 Aligned_cols=281 Identities=11% Similarity=0.161 Sum_probs=200.2
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEE
Q 001534 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1058)
Q Consensus 347 ~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~ 426 (1058)
..+..+.|..|.. +|..|+.|| -++++...-..... .......|.-+-||. .++|..
T Consensus 6 ~ti~~~~~Nqd~~-~lsvGs~~G-yk~~~~~~~~k~~~-------------------~~~~~~~IvEmLFSS--SLvaiV 62 (391)
T KOG2110|consen 6 PTINFIGFNQDST-LLSVGSKDG-YKIFSCSPFEKCFS-------------------KDTEGVSIVEMLFSS--SLVAIV 62 (391)
T ss_pred cceeeeeecccee-EEEccCCCc-eeEEecCchHHhhc-------------------ccCCCeEEEEeeccc--ceeEEE
Confidence 4677788999986 899999887 46777665443211 111233455566654 466655
Q ss_pred eCC--CeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCC-CCCeEEE
Q 001534 427 FSK--HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-EAPVYSV 503 (1058)
Q Consensus 427 ~~d--~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~-~~~v~~~ 503 (1058)
+.+ ..+++.+.+.+..+.... ...+|.+|.++.+ .|+++-.+ .|+|||+++-+.++++... ..+---+
T Consensus 63 ~~~qpr~Lkv~~~Kk~~~ICe~~----fpt~IL~VrmNr~----RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~ 133 (391)
T KOG2110|consen 63 SIKQPRKLKVVHFKKKTTICEIF----FPTSILAVRMNRK----RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLC 133 (391)
T ss_pred ecCCCceEEEEEcccCceEEEEe----cCCceEEEEEccc----eEEEEEcc-cEEEEecccceeehhhhccCCCccceE
Confidence 544 358999998876655321 4567999999754 46666544 4999999999999888654 2222234
Q ss_pred EecccCCccEEEEEe--CCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeE
Q 001534 504 CPHHKESIQFIFSTA--IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1058)
Q Consensus 504 ~~~~~~~~~~l~s~s--~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1058)
+++++..+.+++--+ ..|.|.+||..+.+....+..|.+.+.+++|+++|.+|++++. +...|+++...+|+.+.
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASe---KGTVIRVf~v~~G~kl~ 210 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASE---KGTVIRVFSVPEGQKLY 210 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEecc---CceEEEEEEcCCccEee
Confidence 455556656777654 3689999999999999999999999999999999999999984 45668999999999999
Q ss_pred eecCCCC-CceeEEEEcCCCCEEEEEeCCCeEEEEECCCCce-------------------------------------E
Q 001534 582 TYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM-------------------------------------L 623 (1058)
Q Consensus 582 ~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------------------------------------~ 623 (1058)
+|+.... ..|.+++|+|++.+|.+.+..++|++|.++.... .
T Consensus 211 eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~F 290 (391)
T KOG2110|consen 211 EFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKF 290 (391)
T ss_pred eeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccce
Confidence 9875433 2588999999999999999999999998764220 0
Q ss_pred EEEecCCCCCCcceEEEe--CCCCEEEEEECCCcEEEEECCC
Q 001534 624 TTVDADGGLPASPRLRFN--KEGSLLAVTTSDNGIKILANSD 663 (1058)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~iw~~~~ 663 (1058)
........ ..-..+.+. +...++.+++.||.++.|.+..
T Consensus 291 At~~l~~s-~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 291 ATAKLPES-GRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred eEEEccCC-CccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 00111111 011234444 4678899999999999998854
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-15 Score=151.15 Aligned_cols=194 Identities=15% Similarity=0.192 Sum_probs=156.1
Q ss_pred eEEEEccCCcEEEEEe-CCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEe-
Q 001534 844 ACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK- 921 (1058)
Q Consensus 844 ~~~~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~- 921 (1058)
.++||++||..|++++ ||++|||+..+...+.....|..+|.++.||| ||++||+-+.| ..+||++++|..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999888888888888999999999999 99999999999 89999999997666554
Q ss_pred -CCCCCeEEEEEcCCC-----CEEEEEeCCCcEEEEeCCCCccccc-eeeecCCCCCCCCCCeeEEEEcCCCcEEEEE-e
Q 001534 922 -GHQNRITGLAFSPTL-----NALVSSGADAQLCMWSIDKWEKLKS-RFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-H 993 (1058)
Q Consensus 922 -~h~~~v~~l~~spd~-----~~l~s~s~D~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~-~ 993 (1058)
........+.|+.|+ ..++....-+.|+.|++.....-.- ...+....+ ..|++++.|+||++++.| .
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence 233446678898887 3344445566788888766443100 011111222 358999999999999998 9
Q ss_pred CCeEEEEeC-CCCeeeEEee---ccccceEEccCCcEEEEEECCCeEEEEcCCC
Q 001534 994 ESQISVYDS-KLECSRSVSF---LSLCPYVFGVSSIFLLSTLTKLSVAVHDPLM 1043 (1058)
Q Consensus 994 d~~i~vwd~-~~~~~~~~~~---~~~~~~~~s~~~~~l~~~~~d~~v~vw~~~~ 1043 (1058)
||.|.|++. +.+++..+.. ..++.++|+||.+++++.+.+.+..|..+..
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999 7777777665 4499999999999999999999999987655
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-14 Score=137.03 Aligned_cols=237 Identities=14% Similarity=0.158 Sum_probs=180.1
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEE
Q 001534 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1058)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~ 425 (1058)
..+|+|.+|++|+. .+|++.....|.||.......-. ....+..|...|+.|.|+|..+.|++
T Consensus 10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIvt 72 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIVT 72 (361)
T ss_pred cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCceeE
Confidence 57999999999997 68888889999999998765221 22337889999999999999999999
Q ss_pred EeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCcee----EEeeCCCCCeE
Q 001534 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ----YTFEGHEAPVY 501 (1058)
Q Consensus 426 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~----~~l~~~~~~v~ 501 (1058)
++.|..-+||....+....+...+..|....+++.|+|.++ .|++||..+.|.||-.+...-- +.-+.+...|+
T Consensus 73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence 99999999999966666666667888999999999999999 7999999999999986654321 12234678899
Q ss_pred EEEecccCCccEEEEEeCCCeEEEEeC-----CCC-------------CceEEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001534 502 SVCPHHKESIQFIFSTAIDGKIKAWLY-----DYL-------------GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1058)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~d~~i~~wd~-----~~~-------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1058)
++.|+|++ -++++|+.|+..|++.. +.. +...++....+.+..+.|+|+|..|+-.+.
T Consensus 151 sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H-- 226 (361)
T KOG1523|consen 151 SLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH-- 226 (361)
T ss_pred eeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC--
Confidence 99999765 78999999999999853 211 111233456779999999999999998773
Q ss_pred CCCceEEEeeCCCCc-eeEeecCCCCCceeEEEEcCCCCEEEEEeCC
Q 001534 564 EGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE 609 (1058)
Q Consensus 564 ~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1058)
|..+.+-|..... .+.......- +..++.|-.+ +.++.++.|
T Consensus 227 --ds~v~~~da~~p~~~v~~~~~~~l-P~ls~~~ise-~~vv~ag~~ 269 (361)
T KOG1523|consen 227 --DSTVSFVDAAGPSERVQSVATAQL-PLLSVSWISE-NSVVAAGYD 269 (361)
T ss_pred --CCceEEeecCCCchhccchhhccC-CceeeEeecC-CceeecCCC
Confidence 7778888876554 2333333232 5666666544 345555554
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-14 Score=146.00 Aligned_cols=117 Identities=26% Similarity=0.433 Sum_probs=105.3
Q ss_pred CCCeeEEEEccCCcEEEEEe-CCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEE
Q 001534 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1058)
Q Consensus 840 ~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~ 918 (1058)
.+.|...+|||||++||+.+ ||.++|||..+.+++..++.--+...|++||| ||++|++|++|-.|.||.+...+.+.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 56788999999999999999 99999999999998888887778899999999 99999999999999999999999999
Q ss_pred EEeCCCCCeEEEEEcC-----------------------------------CC-------------CEEEEEeCCCcEEE
Q 001534 919 KLKGHQNRITGLAFSP-----------------------------------TL-------------NALVSSGADAQLCM 950 (1058)
Q Consensus 919 ~l~~h~~~v~~l~~sp-----------------------------------d~-------------~~l~s~s~D~~i~i 950 (1058)
.-+||...|..++|.| ++ -.+.|++.|..+.+
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 9999999999999972 01 14778899999999
Q ss_pred EeCCCCc
Q 001534 951 WSIDKWE 957 (1058)
Q Consensus 951 wd~~~~~ 957 (1058)
||+....
T Consensus 449 WDlteD~ 455 (636)
T KOG2394|consen 449 WDLTEDV 455 (636)
T ss_pred Eecchhh
Confidence 9997543
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.2e-13 Score=128.66 Aligned_cols=238 Identities=13% Similarity=0.164 Sum_probs=170.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCC--eEEEEEecCCCceEEEEEcCC------CcEEE
Q 001534 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG--VNDIAFAHPNKQLCIVTCGDD------KMIKV 481 (1058)
Q Consensus 410 ~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~--v~~~~fs~d~~~~~l~s~~~d------~~v~v 481 (1058)
...+++|+.|...+++|..+| .+||+.+--+... ....+.+. +..|-| ..+. +.+.|+.+ ..|.|
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLf--R~N~-laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLF--RSNY-LALVGGGSRPKYPPNKVII 79 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhh--hhce-EEEecCCCCCCCCCceEEE
Confidence 355699999999999998777 8999987532211 11112222 222333 2332 23334433 47999
Q ss_pred EEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCC-CCCceEEecCCC--CcEEEEEEcCCCCEEEE
Q 001534 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPG--NWCTMMAYSADGTRLFS 558 (1058)
Q Consensus 482 wd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~-~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~ 558 (1058)
||=...+++.++. ...+|.++.+..+ .|++ -.++.|.+|.+. +.+....+.... ....+++-+.+..+|+.
T Consensus 80 WDD~k~~~i~el~-f~~~I~~V~l~r~----riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 80 WDDLKERCIIELS-FNSEIKAVKLRRD----RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAF 153 (346)
T ss_pred EecccCcEEEEEE-eccceeeEEEcCC----eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEc
Confidence 9966777887776 6788999998743 3433 347899999987 455555554433 23333333334444544
Q ss_pred EecCCCCCceEEEeeCCCCce--eEeecCCCCCceeEEEEcCCCCEEEEEeCCCe-EEEEECCCCceEEEEecCCCCCCc
Q 001534 559 CGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPAS 635 (1058)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v 635 (1058)
-+ -..|.|++-|+...+. ...+..|.. .|.|++.+-+|..+++++..|+ |||||..+|+++..+........|
T Consensus 154 Pg---~k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 154 PG---FKTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred CC---CccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 44 3578999999986655 466778877 8999999999999999999887 799999999999999876666789
Q ss_pred ceEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001534 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
.+++|||+..+||++|+.|+++|+.+...
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999999998654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-12 Score=136.55 Aligned_cols=540 Identities=12% Similarity=0.125 Sum_probs=328.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~ 424 (1058)
.+....|++|+.... ++|+|+.||.++|-.+.+...-.. .-.++..+...-...+.||++.|.-+.|+.+.+.|-
T Consensus 13 nnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~----~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLN----KSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCC-eEEeccccceeEEEEccccCCccc----ccccccccccchhhhhccCcceEEEEEecccccccc
Confidence 345788999999887 799999999999999976543211 001222223333445899999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCcee-EEeeCCCCCeEEE
Q 001534 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFEGHEAPVYSV 503 (1058)
Q Consensus 425 ~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~-~~l~~~~~~v~~~ 503 (1058)
+...+|.|.||-+-.+.-.... .-....+.|.+++|+.||. .+.....||.|.+=.++..+.- +.+++ .....+
T Consensus 88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv 162 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHV 162 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcch--heccce
Confidence 9999999999999877543211 1123566799999999999 5777788888877665433221 12322 122355
Q ss_pred EecccCCccEEEEEeCCCeEEEEeCCCCC-------ceEE----ecCCCCcEEEEEEc--------CCCCEEEEEecCCC
Q 001534 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLG-------SRVD----YDAPGNWCTMMAYS--------ADGTRLFSCGTSKE 564 (1058)
Q Consensus 504 ~~~~~~~~~~l~s~s~d~~i~~wd~~~~~-------~~~~----~~~~~~~v~~~~~s--------~~~~~l~~~~~~~~ 564 (1058)
.|+++ ...++.+-.+|.+++||....- +... +......+..+.|. ||...++++..
T Consensus 163 ~ws~D--~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~--- 237 (1189)
T KOG2041|consen 163 LWSED--LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA--- 237 (1189)
T ss_pred eeccc--HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc---
Confidence 67754 4677778888999999865321 1111 11122235555552 47777888764
Q ss_pred CCceEEEeeCCC-CceeEeecCCCCCceeEEEEcCCCCEEEEEeCC---------CeEEEEECCCCceEEEEecCCCCCC
Q 001534 565 GESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---------FQIKFWDMDNMNMLTTVDADGGLPA 634 (1058)
Q Consensus 565 ~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1058)
+|.+.+..-.+ ..++..-.+ -.+..+.|+++|..|+++|.+ +.|.++.. -|+.+.+++.++. .
T Consensus 238 -nGr~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~ 310 (1189)
T KOG2041|consen 238 -NGRMQIMRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--C 310 (1189)
T ss_pred -CceehhhhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--e
Confidence 56666664333 223222222 256778999999999998743 25666653 4677888877765 6
Q ss_pred cceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCC
Q 001534 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714 (1058)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1058)
|++++|-..|-.+|.+- |+.|.+=++..... ...++...-.+.. .++
T Consensus 311 It~lsWEg~gLriA~Av-dsfiyfanIRP~yk-Wgy~e~TvVy~y~----------------------------~~e--- 357 (1189)
T KOG2041|consen 311 ITGLSWEGTGLRIAIAV-DSFIYFANIRPEYK-WGYIEETVVYVYQ----------------------------KEE--- 357 (1189)
T ss_pred eeeeEEcCCceEEEEEe-cceEEEEeecccce-EEEeeeEEEEEEc----------------------------cCC---
Confidence 89999998888877764 56887777655421 1111100000000 000
Q ss_pred CCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccc
Q 001534 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 794 (1058)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 794 (1058)
.-.-.|.+||..+....-+ ......++++..+--.|+.-..+|
T Consensus 358 ---------------------------~p~y~i~Fwdtk~nek~vK----------~V~~~~~~a~~~ehCvL~~~~d~~ 400 (1189)
T KOG2041|consen 358 ---------------------------LPQYGIMFWDTKTNEKTVK----------TVTHFENMAFYREHCVLINRQDDG 400 (1189)
T ss_pred ---------------------------CcceEEEEEecccChhhhh----------hhcceeehheecccEEEEeccccC
Confidence 0013466777765322111 112344566666555555555566
Q ss_pred eEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEeCCeEEEEECCCceE-
Q 001534 795 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKV- 873 (1058)
Q Consensus 795 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~sdg~i~iwd~~~~~~- 873 (1058)
.+.-++.-.+ + + ....+.+-+ .-|..+-. . -..|.-.-..-++.+++.+|...+.+|.....+.
T Consensus 401 ~i~e~s~le~-~---~---~~~~l~LCN-SIGT~lD~------k-ytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~ 465 (1189)
T KOG2041|consen 401 VIPEYSTLEN-R---S---RVYFLQLCN-SIGTSLDY------K-YTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFN 465 (1189)
T ss_pred CCcchhhhhc-c---c---ceEEEeeec-ccCCcCCC------C-cceeeeeEEEecceEEEEeccccEEEEEEeccchh
Confidence 5554321100 0 0 000000000 00111100 0 1122222233377788888888888886532111
Q ss_pred -------------------------------EEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeC
Q 001534 874 -------------------------------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 922 (1058)
Q Consensus 874 -------------------------------~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~ 922 (1058)
.+++.|...+|.+++.|. +++.++-..|.|+-|.+.+..+.....
T Consensus 466 s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y~- 541 (1189)
T KOG2041|consen 466 SVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSYP- 541 (1189)
T ss_pred hhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeecc---eEEEEEeccCceEEEEecceeeeeccc-
Confidence 123344556777787764 688899999999999999877655543
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC---CCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEE-eCCeEE
Q 001534 923 HQNRITGLAFSPTLNALVSSGADAQLCMWSID---KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQIS 998 (1058)
Q Consensus 923 h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~-~d~~i~ 998 (1058)
-+..|.+++..-+...+|....-|.+.+.|++ +|+.++. ..... ..-|.++.|..|+..+++- ....++
T Consensus 542 ~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~-~~~~e------rrDVWd~~Wa~dNp~llAlmeKtrmy 614 (1189)
T KOG2041|consen 542 VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKL-IYTSE------RRDVWDYEWAQDNPNLLALMEKTRMY 614 (1189)
T ss_pred cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeee-eehhh------hhhhhhhhhccCCchHHhhhhhceEE
Confidence 35568899998888899998888999999887 2332221 11111 1458999999999888886 444588
Q ss_pred EEeC
Q 001534 999 VYDS 1002 (1058)
Q Consensus 999 vwd~ 1002 (1058)
|++-
T Consensus 615 ifrg 618 (1189)
T KOG2041|consen 615 IFRG 618 (1189)
T ss_pred EecC
Confidence 8876
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.3e-14 Score=159.06 Aligned_cols=234 Identities=13% Similarity=0.105 Sum_probs=151.0
Q ss_pred ceecCCccccceeEeecCCCCeeEEEEecCCCeEEEEEeC--CCcEEEEEccCccccccCcceeeccccccccccccccc
Q 001534 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1058)
Q Consensus 328 ~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1058)
.+|.+|...........+...+.+++|||||+.++.++.. +..|.+||+.+++..... .+.
T Consensus 185 ~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~ 247 (429)
T PRK01742 185 EVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFR 247 (429)
T ss_pred EEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCC
Confidence 4444444333333334477889999999999865444332 247999999887532210 022
Q ss_pred CCCcCeEEEEECCCCCEEEEEe-CCCeEEEE--EecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEE
Q 001534 406 DAAISVNRCVWGPDGLMLGVAF-SKHIVHLY--TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1058)
Q Consensus 406 ~h~~~v~~~~~spd~~~l~~~~-~d~~i~vw--d~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vw 482 (1058)
+| ..+++|+|||+.|+.++ .+|.+.|| |+.++. .. .+..+...+.+..|+|||+. +++++..++...||
T Consensus 248 g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~ 319 (429)
T PRK01742 248 GH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PS---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVY 319 (429)
T ss_pred Cc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eE---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEE
Confidence 33 34689999999998865 67876665 555543 22 45567777889999999995 34445567888888
Q ss_pred EcCCC-ceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEec
Q 001534 483 DVVAG-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1058)
Q Consensus 483 d~~~~-~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1058)
++... .....+ .+.. ....|+| +|+.++..+.++ +.+||+.++........ ....++.|+|||++++.++.
T Consensus 320 ~~~~~~~~~~~l-~~~~--~~~~~Sp--DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 320 RMSASGGGASLV-GGRG--YSAQISA--DGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSST 391 (429)
T ss_pred EEECCCCCeEEe-cCCC--CCccCCC--CCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEc
Confidence 76542 222333 3433 4466775 557888877765 55599987765433222 23456789999999998874
Q ss_pred CCCCCceEEEeeC--CCCceeEeecCCCCCceeEEEEcCC
Q 001534 562 SKEGESHLVEWNE--SEGAIKRTYSGFRKRSLGVVQFDTT 599 (1058)
Q Consensus 562 ~~~~~~~i~~wd~--~~~~~~~~~~~~~~~~v~~~~~~~~ 599 (1058)
++...+|++ .+|...+.+..+.+ .+...+|+|-
T Consensus 392 ----~g~~~~l~~~~~~G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 392 ----QGLGKVLQLVSADGRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred ----CCCceEEEEEECCCCceEEccCCCC-CCCCcccCCC
Confidence 333444543 35777888877665 6778889874
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.7e-13 Score=131.15 Aligned_cols=286 Identities=15% Similarity=0.184 Sum_probs=189.0
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCC-CCEEE
Q 001534 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLG 424 (1058)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd-~~~l~ 424 (1058)
+-.+..++|++--- -+|++..|-.|++||-.... ... .-......|+|++|-|. ++.|+
T Consensus 98 ~~dlr~~aWhqH~~-~fava~nddvVriy~ksst~-pt~------------------Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSSTC-PTK------------------LKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hcceeeEeechhhh-hhhhhccCcEEEEeccCCCC-Cce------------------ecchhhcceeEEEeccCCcceee
Confidence 45688899998543 46778899999999987622 110 01224457999999995 45777
Q ss_pred EEeCCCeEEEEEecCCCcee-----------eeeeeecCcCCeEEEEEecCCCceEEEEEcC-CCcEEEEEcCCCceeEE
Q 001534 425 VAFSKHIVHLYTYNPTGELR-----------QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYT 492 (1058)
Q Consensus 425 ~~~~d~~i~vwd~~~~~~~~-----------~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~-d~~v~vwd~~~~~~~~~ 492 (1058)
+|+..| |.+|..+...... +...-.+| .+|++|.|.+||. .+++++. |..|.|||+.+|..+.-
T Consensus 158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence 777766 8999875421111 11122344 5899999999999 6777764 67899999999987765
Q ss_pred eeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEe
Q 001534 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1058)
Q Consensus 493 l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1058)
....-+.+.-+.|+|+ +++|+++.-|+..++|.....-.........+.|...+|+|+|++|+.... +...++-.
T Consensus 234 ~~~glgg~slLkwSPd--gd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gsp~lysl 308 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSPD--GDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GSPRLYSL 308 (445)
T ss_pred cccCCCceeeEEEcCC--CCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CCceEEEE
Confidence 5445677889999965 579999999999999965554444444445569999999999998876552 23223221
Q ss_pred eCC--CCc-----------eeEee------cC--CCCCceeEEEEcCCCCEEEEEeCC--------CeEEEEECCCCceE
Q 001534 573 NES--EGA-----------IKRTY------SG--FRKRSLGVVQFDTTRNRFLAAGDE--------FQIKFWDMDNMNML 623 (1058)
Q Consensus 573 d~~--~~~-----------~~~~~------~~--~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~ 623 (1058)
... .+. ++..+ .+ .-.+...+++|.|.|.++++.-.. +.|.+||....-.+
T Consensus 309 ~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v 388 (445)
T KOG2139|consen 309 TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV 388 (445)
T ss_pred eecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence 111 110 00001 01 012357789999999999986533 34677887755444
Q ss_pred EEEe--cCCCCCCcceEEEeC---CCCEEEEEECCCcEEEEEC
Q 001534 624 TTVD--ADGGLPASPRLRFNK---EGSLLAVTTSDNGIKILAN 661 (1058)
Q Consensus 624 ~~~~--~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iw~~ 661 (1058)
.... ...+. .-..+.|+| ++..|..+-..|.+.-|++
T Consensus 389 els~cg~i~ge-~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 389 ELSYCGMIGGE-YPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred EEEecccccCC-CCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 4331 11221 235677776 6777888877888877765
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-15 Score=151.14 Aligned_cols=280 Identities=15% Similarity=0.170 Sum_probs=217.5
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEE
Q 001534 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1058)
Q Consensus 347 ~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~ 426 (1058)
-....+.|+.+|+. ++.|+..|.|..+|+.+++..... .-...|.++.|-.+.+++|++
T Consensus 130 FGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei--------------------~v~Etv~Dv~~LHneq~~AVA 188 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEI--------------------NVMETVRDVTFLHNEQFFAVA 188 (545)
T ss_pred cCCeeeeecCCccE-EEecCCccceeeeecccceeeeee--------------------ehhhhhhhhhhhcchHHHHhh
Confidence 35678999999985 556778999999999998876531 134568899999999999998
Q ss_pred eCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEec
Q 001534 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1058)
Q Consensus 427 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~ 506 (1058)
....+.|||-.+ ..+. .+..| ..|..+.|.|..- +|++++..|.++.-|+.+|+.+..+....+.+..++-+
T Consensus 189 -QK~y~yvYD~~G-tElH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 189 -QKKYVYVYDNNG-TELH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred -hhceEEEecCCC-cEEe---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 455799999665 3344 33333 4689999999865 89999999999999999999999998888888888887
Q ss_pred ccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCC
Q 001534 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1058)
Q Consensus 507 ~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1058)
|-+ ..+-+|...|+|.+|.....+.+..+-.|.++|.++++.++|+|+++.+. |..+.|||++.-..+.++...
T Consensus 261 P~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~tp 334 (545)
T KOG1272|consen 261 PYN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRTP 334 (545)
T ss_pred Ccc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeecC
Confidence 654 68889999999999999999999999999999999999999999999985 888999999988776666652
Q ss_pred CCCceeEEEEcCCCCEEEEEeCCCeEEEEE-CCCC--ceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCC
Q 001534 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWD-MDNM--NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1058)
Q Consensus 587 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1058)
. +...+++|..| +++.+....|.||. .-.+ ..-..+-.|.....|..+.|.|-...|-+|...|.-.+.=...
T Consensus 335 ~--~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGs 410 (545)
T KOG1272|consen 335 H--PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGS 410 (545)
T ss_pred C--Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCC
Confidence 2 56778888665 45555556799994 3222 1222222233334789999999888888888777666654444
Q ss_pred Cc
Q 001534 664 GV 665 (1058)
Q Consensus 664 ~~ 665 (1058)
|.
T Consensus 411 Ge 412 (545)
T KOG1272|consen 411 GE 412 (545)
T ss_pred CC
Confidence 43
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-13 Score=155.44 Aligned_cols=268 Identities=14% Similarity=0.189 Sum_probs=184.2
Q ss_pred ccceeEeec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEE
Q 001534 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1058)
Q Consensus 336 ~~~~~~~~~-h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 414 (1058)
.+..+..+. |...|..++.++...-++++|+.||+|++||...-..-. ..++ ....+...+..+.++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r-----------S~ltys~~~sr~~~v 1104 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR-----------SELTYSPEGSRVEKV 1104 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee-----------eeEEEeccCCceEEE
Confidence 455666666 999999999988774489999999999999987532211 0000 000122356789999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCc--e--eeeeeeecC--cCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCc
Q 001534 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGE--L--RQHLEIDAH--VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1058)
Q Consensus 415 ~~spd~~~l~~~~~d~~i~vwd~~~~~~--~--~~~~~~~~h--~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~ 488 (1058)
...+.+..+|+++.||.|++.+++-... . .+......+ ..-|..-+|....+...++.+..-+.|..||+....
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 9999999999999999999999876211 1 111111122 223444455544443478888889999999998877
Q ss_pred eeEEee--CCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCC-CCcEEEEEEcCC---CCEEEEEecC
Q 001534 489 KQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSAD---GTRLFSCGTS 562 (1058)
Q Consensus 489 ~~~~l~--~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~---~~~l~~~~~~ 562 (1058)
...+++ ...+.|++++.+|.. +++++|+..|.+.+||++-...+..+..+ ..++..+..+|- ....++++..
T Consensus 1185 ~~w~lk~~~~hG~vTSi~idp~~--~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~ 1262 (1431)
T KOG1240|consen 1185 DAWRLKNQLRHGLVTSIVIDPWC--NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS 1262 (1431)
T ss_pred hHHhhhcCccccceeEEEecCCc--eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc
Confidence 666554 356789999998654 79999999999999999987777765543 346777766653 3466665532
Q ss_pred CCCCceEEEeeCCCCceeEeecCCCCC------------------ceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001534 563 KEGESHLVEWNESEGAIKRTYSGFRKR------------------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1058)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 619 (1058)
+.+.|.+|++.+|.+...+....+. .....++...+..+++|+.|..|+.||...
T Consensus 1263 --~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1263 --SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred --CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 4677999999998766655433110 112233444567889999999999999864
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-10 Score=117.43 Aligned_cols=144 Identities=13% Similarity=0.062 Sum_probs=108.7
Q ss_pred CcCceEEEEEccCCceEEEeeccc-eEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEc
Q 001534 771 AASKVVRLIYTNSGLSLLALASNA-VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1058)
Q Consensus 771 ~~~~i~~l~~s~~g~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s 849 (1058)
+...|.-..+..+++-++.+..|| .+.+++.. +++.... .. . -+.|.++..+
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~----------------------~~e~kr~-e~---~-lg~I~av~vs 410 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD----------------------GGEVKRI-EK---D-LGNIEAVKVS 410 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecC----------------------CceEEEe-eC---C-ccceEEEEEc
Confidence 344466666666777788888887 77777653 3332221 12 2 6789999999
Q ss_pred cCCcEEEEEe-CCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCC----eEEEEEcccceeEEEEeCCC
Q 001534 850 KNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS----SVQIYNVRVDEVKTKLKGHQ 924 (1058)
Q Consensus 850 ~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg----~I~iwd~~~~~~~~~l~~h~ 924 (1058)
+||++++++. ...+.++|+.++.....-+...+-|+.++||| +++++|.+--+| .|+++|+.+++....- ...
T Consensus 411 ~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~t 488 (668)
T COG4946 411 PDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPT 488 (668)
T ss_pred CCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEec-CCc
Confidence 9999999998 57899999999988766666778899999999 999999998887 5899999998865433 233
Q ss_pred CCeEEEEEcCCCCEEEEEe
Q 001534 925 NRITGLAFSPTLNALVSSG 943 (1058)
Q Consensus 925 ~~v~~l~~spd~~~l~s~s 943 (1058)
+.=.+-+|.||+++|.--+
T Consensus 489 a~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 489 AYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ccccCcccCCCCcEEEEEe
Confidence 3345678999999987654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-14 Score=146.86 Aligned_cols=262 Identities=14% Similarity=0.147 Sum_probs=195.7
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEE
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd 483 (1058)
|.+|.+.|+.+.|+..|..|++|+.|..|.+||+..+..... -..+|...|....|-|.....-+++++.||.|++=.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 778999999999999999999999999999999998765442 234899889888898865433799999999999886
Q ss_pred cCC-Cce--eEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEec---CCCC---cEEEEEEcCCCC
Q 001534 484 VVA-GRK--QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGN---WCTMMAYSADGT 554 (1058)
Q Consensus 484 ~~~-~~~--~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~---~~~~---~v~~~~~s~~~~ 554 (1058)
+.. +.+ ...+..|.++|.-++.-|... ..|.+++.|+.+.-+|++.......+. .... ..++++..|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCCCC-CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 643 333 345567999999999887654 789999999999999998765543322 2222 567889999776
Q ss_pred -EEEEEecCCCCCceEEEeeCCCCc------eeEeecC-----CCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCC--C
Q 001534 555 -RLFSCGTSKEGESHLVEWNESEGA------IKRTYSG-----FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--M 620 (1058)
Q Consensus 555 -~l~~~~~~~~~~~~i~~wd~~~~~------~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~ 620 (1058)
.+++++ .+..+++||.+.-. .+..+.. .....|++++|+.++.-+++.-.|-.|+++.... |
T Consensus 295 ~~faVgG----~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 295 NEFAVGG----SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred cccccCC----hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 555665 37779999976422 1222221 2223689999998888888888888899995432 2
Q ss_pred ----------ceEEE-EecCCCCCCcceEEE-eCCCCEEEEEECCCcEEEEECCCCceeeecccC
Q 001534 621 ----------NMLTT-VDADGGLPASPRLRF-NKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1058)
Q Consensus 621 ----------~~~~~-~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 673 (1058)
..+.. +++|.....|..+-| -|...++++|++-|.|.||+-.++ ++++.+++
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-eii~~Meg 434 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EIIRFMEG 434 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HHHHHhhc
Confidence 12233 567776667888875 578999999999999999998887 55555444
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.4e-15 Score=162.18 Aligned_cols=340 Identities=17% Similarity=0.211 Sum_probs=219.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCcccccccCccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 001534 170 RLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPFQPVVSPSPG 249 (1058)
Q Consensus 170 rL~~ll~qa~~~q~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~f 249 (1058)
-|..|+-|+++.|+.+|..|....+++|||.+|+|++++.....|.++...+..... +.-|
T Consensus 1014 sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl~~rel-------~~~y------------ 1074 (1516)
T KOG1832|consen 1014 SLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRLGTREL-------QSFY------------ 1074 (1516)
T ss_pred cHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcccchhh-------cCcc------------
Confidence 499999999999999999999999999999999999955444444444422200000 0000
Q ss_pred cccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCCchhhhhhcccCCcceeeecCCCCCcce
Q 001534 250 AIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNV 329 (1058)
Q Consensus 250 s~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1058)
+.+.-.-.|...+..+++
T Consensus 1075 --------------------------------------------~gV~g~~~dr~~IFSRFr------------------ 1092 (1516)
T KOG1832|consen 1075 --------------------------------------------SGVHGNRRDRQFIFSRFR------------------ 1092 (1516)
T ss_pred --------------------------------------------cccccCcccchhhHhhcc------------------
Confidence 001111112222323222
Q ss_pred ecCCccccceeEeec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCC
Q 001534 330 YSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408 (1058)
Q Consensus 330 ~~~~~~~~~~~~~~~-h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 408 (1058)
..+++. |+...+|++||-+.+ .|++|+..|.|+++++.+|..... ..+|.
T Consensus 1093 ---------~w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~ 1143 (1516)
T KOG1832|consen 1093 ---------SWRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQ 1143 (1516)
T ss_pred ---------cchhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------ccccc
Confidence 123333 678899999999987 688999999999999999987765 56799
Q ss_pred cCeEEEEECCCCCEEEEEeCCC--eEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCC
Q 001534 409 ISVNRCVWGPDGLMLGVAFSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1058)
Q Consensus 409 ~~v~~~~~spd~~~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~ 486 (1058)
++|+.+.=+.||..+++.+.-. ...+|++.+-- ...+.+ ..-.++.|+..... -+.|.....+.+||+.+
T Consensus 1144 SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~--~~~Hsf----~ed~~vkFsn~~q~--r~~gt~~d~a~~YDvqT 1215 (1516)
T KOG1832|consen 1144 SAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG--GPRHSF----DEDKAVKFSNSLQF--RALGTEADDALLYDVQT 1215 (1516)
T ss_pred cccccccccCCcceeeeeccccCchHHHhcccccc--Cccccc----cccceeehhhhHHH--HHhcccccceEEEeccc
Confidence 9999999999999887765433 47899987622 222222 23567889876543 33344445789999999
Q ss_pred CceeEEe-eC---CCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecC
Q 001534 487 GRKQYTF-EG---HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1058)
Q Consensus 487 ~~~~~~l-~~---~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1058)
+.++.++ .+ .+..-++..|+|.. .+++- || .+||++..+.+..+..... .-.-.|+|.|..++..+
T Consensus 1216 ~~~l~tylt~~~~~~y~~n~a~FsP~D--~LIln---dG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS-- 1285 (1516)
T KOG1832|consen 1216 CSPLQTYLTDTVTSSYSNNLAHFSPCD--TLILN---DG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS-- 1285 (1516)
T ss_pred CcHHHHhcCcchhhhhhccccccCCCc--ceEee---Cc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec--
Confidence 9887763 22 22233566777654 34432 33 4799998876665544331 12335899999999874
Q ss_pred CCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEe--CC---------------CeEEEEECCCCceEEE
Q 001534 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DE---------------FQIKFWDMDNMNMLTT 625 (1058)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d---------------g~i~iwd~~~~~~~~~ 625 (1058)
.|||+++.+.++....-.. ..+.|+..|+.++..- .| ...+-+|......+.+
T Consensus 1286 -------EIwD~RTF~lLh~VP~Ldq---c~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaT 1355 (1516)
T KOG1832|consen 1286 -------EIWDMRTFKLLHSVPSLDQ---CAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIAT 1355 (1516)
T ss_pred -------hhhhhHHHHHHhcCccccc---eEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhcccccccccccee
Confidence 5899999998887766543 4677888887766542 00 1233444444555555
Q ss_pred EecCCCCCCcceEEEeCCCCEEEEE
Q 001534 626 VDADGGLPASPRLRFNKEGSLLAVT 650 (1058)
Q Consensus 626 ~~~~~~~~~v~~~~~s~~~~~l~~~ 650 (1058)
+.... .+..++-+|...++++-
T Consensus 1356 i~v~R---~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1356 IPVDR---CLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred eeccc---chhhhhcCCccceEEEE
Confidence 54432 34555556655565554
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-13 Score=141.68 Aligned_cols=285 Identities=11% Similarity=0.136 Sum_probs=210.7
Q ss_pred eeEeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCC--CcCeEEEEE
Q 001534 339 VVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA--AISVNRCVW 416 (1058)
Q Consensus 339 ~~~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~ 416 (1058)
.+..++++..-+.|..||||++++|+|..--.|++||+..-.... .-| ...|.-.-.
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF---------------------ERhlDae~V~feiL 102 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKF---------------------ERHLDAEVVDFEIL 102 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeee---------------------eecccccceeEEEe
Confidence 456677888999999999999999999999999999998754332 222 234555556
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCC
Q 001534 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1058)
Q Consensus 417 spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~ 496 (1058)
+-|-..++.-..|.+|.+...-+ ... .+ .-...-.+++++.-.-. |+.++....|+-++++.|+.+..|...
T Consensus 103 sDD~SK~v~L~~DR~IefHak~G-~hy----~~-RIP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~ 174 (703)
T KOG2321|consen 103 SDDYSKSVFLQNDRTIEFHAKYG-RHY----RT-RIPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETD 174 (703)
T ss_pred ccchhhheEeecCceeeehhhcC-eee----ee-ecCcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccc
Confidence 66666666667787776654322 100 11 01223455666544442 444555668999999999999999888
Q ss_pred CCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecC------CCC-----cEEEEEEcCCCCEEEEEecCCCC
Q 001534 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA------PGN-----WCTMMAYSADGTRLFSCGTSKEG 565 (1058)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~------~~~-----~v~~~~~s~~~~~l~~~~~~~~~ 565 (1058)
.+.++++..++.. .+|++|+.+|.|..||.+.......+.. +.+ .|+++.|+.+|-.+++|+.
T Consensus 175 ~~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts---- 248 (703)
T KOG2321|consen 175 SGELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS---- 248 (703)
T ss_pred cccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----
Confidence 8999999998654 6899999999999999988766554432 222 5999999999999999875
Q ss_pred CceEEEeeCCCCceeEeecCCCCCceeEEEEcCC--CCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCC
Q 001534 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT--RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1058)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1058)
.|.+.+||+++.+++..-.....-+|..+.|.+. ++.+++. +...++|||-.+|+....+.... .++.+++-|+
T Consensus 249 ~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p~ 324 (703)
T KOG2321|consen 249 TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS---DLNDFCFVPG 324 (703)
T ss_pred CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccC---CcCceeeecC
Confidence 8889999999988877655444447888999765 3344443 45679999999999988886543 4889999999
Q ss_pred CCEEEEEECCCcEEEEECC
Q 001534 644 GSLLAVTTSDNGIKILANS 662 (1058)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~ 662 (1058)
+.+++++-.++.+..|=+.
T Consensus 325 sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 325 SGMFFTANESSKMHTYYIP 343 (703)
T ss_pred CceEEEecCCCcceeEEcc
Confidence 9999999988888776553
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-12 Score=146.19 Aligned_cols=238 Identities=10% Similarity=0.088 Sum_probs=157.7
Q ss_pred CcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEe---CCCeEEEEEecCCCceee
Q 001534 369 GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF---SKHIVHLYTYNPTGELRQ 445 (1058)
Q Consensus 369 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~---~d~~i~vwd~~~~~~~~~ 445 (1058)
..|.+||........ +..+...+.+.+|||||+.|+..+ .+..|.+|++.+++..
T Consensus 179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-- 236 (429)
T PRK03629 179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-- 236 (429)
T ss_pred eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE--
Confidence 368888887654322 344667899999999999998764 2457999999887532
Q ss_pred eeeeecCcCCeEEEEEecCCCceEEEEEcCCC--cEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeC-CCe
Q 001534 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGK 522 (1058)
Q Consensus 446 ~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~--~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~-d~~ 522 (1058)
.+....+.+..++|+|||+. ++++.+.++ .|++||+.+++... +..+...+....|+|+ |+.|+..+. ++.
T Consensus 237 --~l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPD--G~~I~f~s~~~g~ 310 (429)
T PRK03629 237 --QVASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPD--SQNLAYTSDQAGR 310 (429)
T ss_pred --EccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCC--CCEEEEEeCCCCC
Confidence 22223334557899999995 333444454 58899998887544 4444556778888864 577766665 444
Q ss_pred EEEE--eCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCC
Q 001534 523 IKAW--LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1058)
Q Consensus 523 i~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1058)
..+| |+.++.. ..+...........|+|||++++..+.. ++...|++||+.+++.. .+.... ......|+|||
T Consensus 311 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~-~Lt~~~--~~~~p~~SpDG 385 (429)
T PRK03629 311 PQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ-VLTDTF--LDETPSIAPNG 385 (429)
T ss_pred ceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeE-EeCCCC--CCCCceECCCC
Confidence 4555 5554433 3334344456678999999999876642 23457999999887644 333221 23457899999
Q ss_pred CEEEEEeCCCe---EEEEECCCCceEEEEecCCCCCCcceEEEeC
Q 001534 601 NRFLAAGDEFQ---IKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1058)
Q Consensus 601 ~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1058)
+.++.++.++. +.++++. ++....+..+. ..+...+|+|
T Consensus 386 ~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 386 TMVIYSSSQGMGSVLNLVSTD-GRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred CEEEEEEcCCCceEEEEEECC-CCCeEECccCC--CCcCCcccCC
Confidence 99999886654 6777874 55555555433 3577788887
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-10 Score=115.31 Aligned_cols=403 Identities=14% Similarity=0.125 Sum_probs=228.6
Q ss_pred ecCCccccceeEeecCCCCeeEEEEecCCCeEEEE----E--eCCCcEEEEEccCccccccCcceeeccccccccccccc
Q 001534 330 YSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLV----G--TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1058)
Q Consensus 330 ~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~lla~----g--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1058)
|..+...++..+...|-+-|+...|+|||+.++.+ | ...+.+.+.+.++|+...- +.
T Consensus 62 We~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi-----------------Ty 124 (668)
T COG4946 62 WEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI-----------------TY 124 (668)
T ss_pred HHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE-----------------EE
Confidence 44455567777777788899999999999864442 1 2345678888888875431 11
Q ss_pred ccCCCcCeEE-EEECCCCCEEEEEeCCCe----EEEEEecCCCc-eeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCC
Q 001534 404 LNDAAISVNR-CVWGPDGLMLGVAFSKHI----VHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1058)
Q Consensus 404 ~~~h~~~v~~-~~~spd~~~l~~~~~d~~----i~vwd~~~~~~-~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~ 477 (1058)
+ | ...+. .-|+|||+.+++...-.- -.+|.+..... .. .+ .-++.+.+.+- ||. ++.|-.--
T Consensus 125 f-G--r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e---~L--nlGpathiv~~-dg~---ivigRnty 192 (668)
T COG4946 125 F-G--RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE---PL--NLGPATHIVIK-DGI---IVIGRNTY 192 (668)
T ss_pred e-c--cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee---ec--cCCceeeEEEe-CCE---EEEccCcc
Confidence 2 2 23333 459999999988754322 23444433221 11 11 23455555553 443 33322111
Q ss_pred ------------cEEEEEcC-CCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcE
Q 001534 478 ------------MIKVWDVV-AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWC 544 (1058)
Q Consensus 478 ------------~v~vwd~~-~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v 544 (1058)
.=++|--. .|+....+-.-.+.|.+-.+. .+ ...+....||.=.+|..+-.+.-..-...-...
T Consensus 193 dLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV--~~-RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdY 269 (668)
T COG4946 193 DLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV--GE-RVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDY 269 (668)
T ss_pred cCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEE--cc-eEEEEecccCccceEEeccCCchhhhcCCchhc
Confidence 22455322 232333333333334333222 11 233333445554455443322211111111123
Q ss_pred EEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecC---C---CCC-ceeE---EE-EcC-CCCEEEEEeCCCeE
Q 001534 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG---F---RKR-SLGV---VQ-FDT-TRNRFLAAGDEFQI 612 (1058)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~---~~~-~v~~---~~-~~~-~~~~l~~~~~dg~i 612 (1058)
.+-..+.||+.++... .|.|++||..+......--+ . ... .+.- +. |++ +|.+++..+. |..
T Consensus 270 Y~R~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-Gka 343 (668)
T COG4946 270 YPRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKA 343 (668)
T ss_pred cccccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcE
Confidence 3444567999988653 45599999887543321111 1 000 0110 11 222 4667776664 667
Q ss_pred EEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCC-cEEEEECCCCceeeecccCCcccccCCCCCCCCCCCc
Q 001534 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN-GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPL 691 (1058)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1058)
.+.+...+-.++.- +...|....+..+++-++.|..|| .+-|++..+++ . +.+.
T Consensus 344 Fi~~~~~~~~iqv~----~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~-kr~e------------------- 398 (668)
T COG4946 344 FIMRPWDGYSIQVG----KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-V-KRIE------------------- 398 (668)
T ss_pred EEECCCCCeeEEcC----CCCceEEEEEccCCcceEEeccCCceEEEEecCCce-E-EEee-------------------
Confidence 77766554444332 123477777888888899999998 89999988772 1 1111
Q ss_pred cccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcC
Q 001534 692 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA 771 (1058)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~ 771 (1058)
..
T Consensus 399 ------------------------------------------------------------------------------~~ 400 (668)
T COG4946 399 ------------------------------------------------------------------------------KD 400 (668)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 03
Q ss_pred cCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccC
Q 001534 772 ASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 851 (1058)
Q Consensus 772 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d 851 (1058)
-+.|.++..+++|+.++++.....+.+.|++ +|......-.. .+-|+.++|||+
T Consensus 401 lg~I~av~vs~dGK~~vvaNdr~el~vidid----------------------ngnv~~idkS~----~~lItdf~~~~n 454 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVANDRFELWVIDID----------------------NGNVRLIDKSE----YGLITDFDWHPN 454 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcCceEEEEEEec----------------------CCCeeEecccc----cceeEEEEEcCC
Confidence 3568899999999998888777777766554 44433333333 678999999999
Q ss_pred CcEEEEEe-C----CeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEe
Q 001534 852 DSYVMSAS-G----GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM 901 (1058)
Q Consensus 852 ~~~la~~s-d----g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~ 901 (1058)
++++|.+- + ..|++||+.+++...... +...=.+-+|.| ++++|..-+
T Consensus 455 sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~-d~ryLYfLs 507 (668)
T COG4946 455 SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP-DGRYLYFLS 507 (668)
T ss_pred ceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCC-CCcEEEEEe
Confidence 99999986 4 459999999887765433 344445667888 788775543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.7e-14 Score=145.75 Aligned_cols=240 Identities=10% Similarity=0.158 Sum_probs=166.1
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC--CCC
Q 001534 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGL 421 (1058)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--d~~ 421 (1058)
.|.+.|+|++|+.||. +|++|+.|-.+.|||.-..+.++. +-+||...|.++.|-| +.+
T Consensus 48 GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tnnr 108 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTNNR 108 (758)
T ss_pred cccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCCCe
Confidence 4899999999999998 899999999999999987766553 3578999999999999 567
Q ss_pred EEEEEeCCCeEEEEEecCCC-------ceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCce-eE--
Q 001534 422 MLGVAFSKHIVHLYTYNPTG-------ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QY-- 491 (1058)
Q Consensus 422 ~l~~~~~d~~i~vwd~~~~~-------~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~-~~-- 491 (1058)
.+++|..|..|+++|+...+ .......+..|...|..++-.|++.+ .+.++++||+++-+|++.... -.
T Consensus 109 iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~~ 187 (758)
T KOG1310|consen 109 IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPDE 187 (758)
T ss_pred EEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCccc
Confidence 88999999999999998521 12233355678999999999999976 899999999999999986321 11
Q ss_pred -------EeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001534 492 -------TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1058)
Q Consensus 492 -------~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1058)
.+...--...++.++|... .+|+.|+.|-..++||.+...+...-.. .+.++|. .
T Consensus 188 ~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~------~~~~~pp-----------~ 249 (758)
T KOG1310|consen 188 DCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDG------TMNTCPP-----------K 249 (758)
T ss_pred cccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCc------cccCCCC-----------c
Confidence 1111223456778888654 7999999999999999643222111000 0001110 0
Q ss_pred CCceEEEeeCC-----CCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Q 001534 565 GESHLVEWNES-----EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 626 (1058)
Q Consensus 565 ~~~~i~~wd~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 626 (1058)
..+.+..|-.. .|...... ..++-++|+|+|..|+..-....|+++|+..++....+
T Consensus 250 ~~~cv~yf~p~hlkn~~gn~~~~~-----~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 250 DCRCVRYFSPGHLKNSQGNLDRYI-----TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ccchhheecCccccCcccccccce-----eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 01111111110 01111100 13566889999988887666678999999987766554
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-12 Score=146.25 Aligned_cols=237 Identities=9% Similarity=0.030 Sum_probs=153.6
Q ss_pred ceecCCccccceeEeecCCCCeeEEEEecCCCeEEEEEe--CCCcEEEEEccCccccccCcceeeccccccccccccccc
Q 001534 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1058)
Q Consensus 328 ~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1058)
.+|.+|...........+...+.+.+|||||+.++.+.. .+..|.+|++.+++... +.
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~ 239 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VA 239 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------cc
Confidence 455555443333333446778999999999986555432 24579999998875432 11
Q ss_pred CCCcCeEEEEECCCCCEEEEE-eCCC--eEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcC-CCc--E
Q 001534 406 DAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKM--I 479 (1058)
Q Consensus 406 ~h~~~v~~~~~spd~~~l~~~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~-d~~--v 479 (1058)
...+.+.+.+|||||+.|+.. +.+| .|.+||+++++.. .+..+...+....|+|||+ .|+..+. ++. |
T Consensus 240 ~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~I 313 (429)
T PRK03629 240 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQV 313 (429)
T ss_pred CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCceE
Confidence 223334568999999988865 3444 5889999886543 3334455678899999999 4554443 444 4
Q ss_pred EEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCC---CeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEE
Q 001534 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1058)
Q Consensus 480 ~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1058)
.++|+.+++. ..+..+........|+| +|+.++..+.+ ..|.+||+.++.... +.. ........|+|||+.+
T Consensus 314 y~~d~~~g~~-~~lt~~~~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i 388 (429)
T PRK03629 314 YKVNINGGAP-QRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMV 388 (429)
T ss_pred EEEECCCCCe-EEeecCCCCccCEEECC--CCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEE
Confidence 4457666654 34444444556677885 45677665543 358889988765433 332 2234567899999999
Q ss_pred EEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcC
Q 001534 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1058)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1058)
+..+.++ +...++++++. |.....+.++.+ .+...+|+|
T Consensus 389 ~~~s~~~-~~~~l~~~~~~-G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 389 IYSSSQG-MGSVLNLVSTD-GRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEEEcCC-CceEEEEEECC-CCCeEECccCCC-CcCCcccCC
Confidence 9887543 24568888874 666666776655 677788886
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.4e-12 Score=123.10 Aligned_cols=154 Identities=14% Similarity=0.187 Sum_probs=113.5
Q ss_pred CCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCE-EEEEecCCCCCceEEEeeCCC
Q 001534 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR-LFSCGTSKEGESHLVEWNESE 576 (1058)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~ 576 (1058)
..+..++|++.- ..++++..|..|++||-........-......|++++|-|.+.. ++.++ .+-|.+|....
T Consensus 99 ~dlr~~aWhqH~--~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgC-----r~gIciW~~s~ 171 (445)
T KOG2139|consen 99 IDLRGVAWHQHI--IAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGC-----RAGICIWSDSR 171 (445)
T ss_pred cceeeEeechhh--hhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeee-----cceeEEEEcCc
Confidence 456777888643 57888999999999997763333333334568999999997654 44544 44599997642
Q ss_pred ----Cce----------eEeecCCCCCceeEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEecCCCCCCcceEEEe
Q 001534 577 ----GAI----------KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1058)
Q Consensus 577 ----~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 641 (1058)
+.. +....+| ..|+++.|.+||..+++++ .|..|.|||.+++..+..... +.+.+.-+.||
T Consensus 172 tln~~r~~~~~s~~~~qvl~~pgh--~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--glgg~slLkwS 247 (445)
T KOG2139|consen 172 TLNANRNIRMMSTHHLQVLQDPGH--NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK--GLGGFSLLKWS 247 (445)
T ss_pred ccccccccccccccchhheeCCCC--ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc--CCCceeeEEEc
Confidence 111 1122333 3799999999999999987 678899999999887766532 23467889999
Q ss_pred CCCCEEEEEECCCcEEEEECC
Q 001534 642 KEGSLLAVTTSDNGIKILANS 662 (1058)
Q Consensus 642 ~~~~~l~~~~~dg~i~iw~~~ 662 (1058)
|||.+|++++-|+..++|+..
T Consensus 248 Pdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 248 PDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred CCCCEEEEecccceeeeehhc
Confidence 999999999999999999654
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-12 Score=143.93 Aligned_cols=237 Identities=11% Similarity=0.030 Sum_probs=160.8
Q ss_pred CcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeC---CCeEEEEEecCCCceee
Q 001534 369 GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQ 445 (1058)
Q Consensus 369 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~---d~~i~vwd~~~~~~~~~ 445 (1058)
..|.+||..+..... +..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 378888876543322 4568889999999999999988764 468999999887542
Q ss_pred eeeeecCcCCeEEEEEecCCCceEEEEEcCCCc--EEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeC-CC-
Q 001534 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM--IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG- 521 (1058)
Q Consensus 446 ~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~--v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~-d~- 521 (1058)
.+..+.+.+.+.+|+|||+. ++++.+.++. |.+||+.++.. ..+..+........|+|+ |..++..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spD--G~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPD--GSQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCC--CCEEEEEECCCCC
Confidence 34456677889999999995 4456666655 77779887764 456666666777888864 567766653 33
Q ss_pred -eEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCC
Q 001534 522 -KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1058)
Q Consensus 522 -~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1058)
.|.+||+..+... .+......+....|+|||++++..... .+...|.+||+.++.. ..+... . .+....|+|||
T Consensus 314 ~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG 388 (435)
T PRK05137 314 PQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNG 388 (435)
T ss_pred CeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCC
Confidence 5777887654433 333334556778999999999877642 2245789999865543 333321 1 45678899999
Q ss_pred CEEEEEeCC------CeEEEEECCCCceEEEEecCCCCCCcceEEEeC
Q 001534 601 NRFLAAGDE------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1058)
Q Consensus 601 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1058)
+.++..+.+ ..++++|+..+.. ..+... ..+...+|+|
T Consensus 389 ~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~---~~~~~p~Wsp 432 (435)
T PRK05137 389 RVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTP---GDASDPAWSP 432 (435)
T ss_pred CEEEEEEccCCCCCcceEEEEECCCCce-EEccCC---CCccCcccCC
Confidence 998875532 3578888876554 344322 1356667776
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-11 Score=118.31 Aligned_cols=239 Identities=15% Similarity=0.220 Sum_probs=152.4
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEE-EeCC------CeEEEE
Q 001534 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA-AGDE------FQIKFW 615 (1058)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d------g~i~iw 615 (1058)
...+++|+.|..-++++. +.-.++|+.+--+....-..+.. .+.-+..--..++++. ||.+ ..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~-----~~Gfriyn~~P~ke~~~r~~~~~-G~~~veMLfR~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVAT-----DTGFRIYNCDPFKESASRQFIDG-GFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEe-----cCceEEEecCchhhhhhhccccC-chhhhhHhhhhceEEEecCCCCCCCCCceEEEE
Confidence 445689999998888876 33388998764222111111111 1222222223355555 3332 479999
Q ss_pred ECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccc
Q 001534 616 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINA 695 (1058)
Q Consensus 616 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1058)
|=...+++..+... .+|.++.+.++ .|++.- .+.|.+|...+..+.+..+.....
T Consensus 81 DD~k~~~i~el~f~---~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~N------------------- 135 (346)
T KOG2111|consen 81 DDLKERCIIELSFN---SEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSN------------------- 135 (346)
T ss_pred ecccCcEEEEEEec---cceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccC-------------------
Confidence 97777788777665 36888988876 454443 569999999866454444432110
Q ss_pred cCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCce
Q 001534 696 LGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKV 775 (1058)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i 775 (1058)
|. ..
T Consensus 136 --------------------------------------Pk--------------------------------------Gl 139 (346)
T KOG2111|consen 136 --------------------------------------PK--------------------------------------GL 139 (346)
T ss_pred --------------------------------------CC--------------------------------------ce
Confidence 00 01
Q ss_pred EEEEEccCCceEEEee-ccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcE
Q 001534 776 VRLIYTNSGLSLLALA-SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 854 (1058)
Q Consensus 776 ~~l~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~ 854 (1058)
.++.-+.+...|+.-+ .-|.+.+-|+...... .+....+| ...|.|++++.+|.+
T Consensus 140 C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~-----------------------~p~~I~AH-~s~Iacv~Ln~~Gt~ 195 (346)
T KOG2111|consen 140 CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN-----------------------APSIINAH-DSDIACVALNLQGTL 195 (346)
T ss_pred EeecCCCCceEEEcCCCccceEEEEEhhhcCcC-----------------------CceEEEcc-cCceeEEEEcCCccE
Confidence 1111111112222222 2366777665432211 00111238 999999999999999
Q ss_pred EEEEe-CCe-EEEEECCCceEEEEecCC--CCCeEEEEEeCCCCCEEEEEeCCCeEEEEEccc
Q 001534 855 VMSAS-GGK-VSLFNMMTFKVMTMFMSP--PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1058)
Q Consensus 855 la~~s-dg~-i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~ 913 (1058)
+|++| .|+ |+|||..+|+.+.+++.- ...|.+++||| +..+||++++.|++.|+.+..
T Consensus 196 vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 196 VATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence 99999 788 999999999999998753 34799999999 999999999999999998864
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-12 Score=135.57 Aligned_cols=253 Identities=10% Similarity=0.116 Sum_probs=168.0
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEE-----CCCCC
Q 001534 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW-----GPDGL 421 (1058)
Q Consensus 347 ~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-----spd~~ 421 (1058)
+.+....++-.|.+++.- ....+.+|+...+..+.. ++....+++. ..+|-+| .|++-
T Consensus 124 g~~~~~~~~~~gd~lcFn--vg~~lyv~~~~g~~~~~~-------------pi~k~~y~gt--~P~cHdfn~~~a~~~g~ 186 (636)
T KOG2394|consen 124 GIVTNTNQSGKGDRLCFN--VGRELYVYSYRGAADLSK-------------PIDKREYKGT--SPTCHDFNSFTATPKGL 186 (636)
T ss_pred cceeeccccCCCCEEEEe--cCCeEEEEEccCcchhcc-------------chhhhcccCC--CCceecccccccCCCCc
Confidence 356666777777765442 346789999886544331 1122223322 2233344 34677
Q ss_pred EEEEEeCCCeEEEEEecCCCceeeeeeee--cCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCC
Q 001534 422 MLGVAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1058)
Q Consensus 422 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~ 499 (1058)
-|+.|-..|.|.+.|....+..+ ..... -.+..|+|+.|-|.++. .++.+-.+|.++++|.. +...
T Consensus 187 dllIGf~tGqvq~idp~~~~~sk-lfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~ 254 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSK-LFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCG 254 (636)
T ss_pred ceEEeeccCceEEecchhhHHHH-hhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------cccc
Confidence 88899999999999876632211 11111 12468999999998887 67777889999999861 1112
Q ss_pred eEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCce
Q 001534 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1058)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1058)
.+...+..-.++..+.....-+. .+..++..+....+.|...+|+|||++|++.+ .|+.++|||..+.++
T Consensus 255 ~t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VS----qDGfLRvF~fdt~eL 324 (636)
T KOG2394|consen 255 ATAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVS----QDGFLRIFDFDTQEL 324 (636)
T ss_pred CCCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEe----cCceEEEeeccHHHH
Confidence 22222222233333333221110 11133334444556899999999999999998 499999999999888
Q ss_pred eEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEe
Q 001534 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1058)
Q Consensus 580 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 641 (1058)
+..++..-+ ...|++|+|||+++++||+|.-|.||.+..++.+..=.+ |...|..++|.
T Consensus 325 lg~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG--HkSWVs~VaFD 383 (636)
T KOG2394|consen 325 LGVMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG--HKSWVSVVAFD 383 (636)
T ss_pred HHHHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc--cccceeeEeec
Confidence 877777666 789999999999999999999999999999888776554 45578888887
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-12 Score=129.16 Aligned_cols=272 Identities=11% Similarity=0.125 Sum_probs=194.9
Q ss_pred CCCeeEEEEecCCCeEEEEEe-CCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEE
Q 001534 346 GSNVMSMDFHPQQQTILLVGT-NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1058)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~ 424 (1058)
...|+.++|--|++.=+..+. .+..+............. .|++. .......+|..++.. ...|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CCEEE
Confidence 457888888877754333343 666777777766554432 12221 123345556555543 34677
Q ss_pred EEeCCCeEEEEEecCCCceee-eeeeecCcCCeEEEEEecCCCceEEEEEcCC--CcEEEEEcCCCceeEEeeCC-----
Q 001534 425 VAFSKHIVHLYTYNPTGELRQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQYTFEGH----- 496 (1058)
Q Consensus 425 ~~~~d~~i~vwd~~~~~~~~~-~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d--~~v~vwd~~~~~~~~~l~~~----- 496 (1058)
+|-.+|.+.+|..+.+..-.. ...+. ....+..|.-++..+. ++++|+.. ..+++||+...+.+.+-+.-
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeee-cCCceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 888999999999985431111 11222 2346777777777775 67779998 89999999988666543321
Q ss_pred ----CCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCc-eEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEE
Q 001534 497 ----EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1058)
Q Consensus 497 ----~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1058)
.-.++++.|.+..+...|++++.-+.+++||.+.+.. ...+.....+++++...|++++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 1235566777664468999999999999999987654 4467778889999999999999999864 777999
Q ss_pred eeCCCCceeEe-ecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeC
Q 001534 572 WNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1058)
Q Consensus 572 wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1058)
||++.++.... +.+..+ .++++..+|.+++++++|-|..|||+|+.+.+++....... ..+++.+.+
T Consensus 274 FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~ 341 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRD 341 (412)
T ss_pred ecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecC
Confidence 99999998877 677666 89999999999999999999999999999977776654433 245555544
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-12 Score=135.80 Aligned_cols=189 Identities=13% Similarity=0.215 Sum_probs=152.0
Q ss_pred eEEEEcc-CCcEEEEEeCCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEe-
Q 001534 844 ACIALSK-NDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK- 921 (1058)
Q Consensus 844 ~~~~~s~-d~~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~- 921 (1058)
..++++. .-.++..|+...|+-++++.|+.+..|....+.++++..++ -..+||+|+.+|.|.+||..+......+.
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~ 215 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDA 215 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeec
Confidence 4555543 44566666678899999999999999988889999999999 88899999999999999998776555543
Q ss_pred -----CCCC-----CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCC--CcEE
Q 001534 922 -----GHQN-----RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND--QTHL 989 (1058)
Q Consensus 922 -----~h~~-----~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d--~~~l 989 (1058)
.|.+ .|+++.|+.||-.+++|+.+|.|.|||+.+.+.+ .+...... .+|..+.|-+. +..+
T Consensus 216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl---~~kdh~~e----~pi~~l~~~~~~~q~~v 288 (703)
T KOG2321|consen 216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL---LVKDHGYE----LPIKKLDWQDTDQQNKV 288 (703)
T ss_pred ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce---eecccCCc----cceeeecccccCCCceE
Confidence 2333 3999999999999999999999999999986643 22222222 56899999665 5666
Q ss_pred EEEeCCeEEEEeC-CCCeeeEEee-ccccceEEccCCcEEEEEECCCeEEEEc
Q 001534 990 LVVHESQISVYDS-KLECSRSVSF-LSLCPYVFGVSSIFLLSTLTKLSVAVHD 1040 (1058)
Q Consensus 990 ~~~~d~~i~vwd~-~~~~~~~~~~-~~~~~~~~s~~~~~l~~~~~d~~v~vw~ 1040 (1058)
++.....++|||- +++....+.. ..++.+|+-|++-+++++..+..+..|-
T Consensus 289 ~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 289 VSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred EecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEE
Confidence 6667778999999 9998888877 5599999999999999999988777664
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-12 Score=145.76 Aligned_cols=241 Identities=14% Similarity=0.129 Sum_probs=152.6
Q ss_pred CcceecCCccccceeEeecCCCCeeEEEEecCCCeEEEEEeCC--CcEEEEEccCccccccCcceeeccccccccccccc
Q 001534 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1058)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1058)
...+|.+|...........+...+.+.+|||||+.++++...+ ..|.+||+.+++...
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-------------------- 234 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-------------------- 234 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------
Confidence 3456666654333344445778999999999998655444333 469999999886432
Q ss_pred ccCCCcCeEEEEECCCCCEEEE-EeCCCeEEEEEec--CCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEE
Q 001534 404 LNDAAISVNRCVWGPDGLMLGV-AFSKHIVHLYTYN--PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~-~~~d~~i~vwd~~--~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~ 480 (1058)
+....+.+.+.+|||||+.|+. .+.+|...||.++ ++. .. .+..+........|+|||+. +++++..++...
T Consensus 235 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~ 309 (427)
T PRK02889 235 VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQ 309 (427)
T ss_pred eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcE
Confidence 2223445678999999998875 5677776666554 433 22 44455556678899999995 233444456666
Q ss_pred EEEc--CCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCC---eEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCE
Q 001534 481 VWDV--VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1058)
Q Consensus 481 vwd~--~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1058)
+|.+ .+++. ..+..+.......+|+| +|++++..+.++ .|.+||+.+++.... .. ........|+|||+.
T Consensus 310 Iy~~~~~~g~~-~~lt~~g~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t~-~~~~~~p~~spdg~~ 384 (427)
T PRK02889 310 IYRMPASGGAA-QRVTFTGSYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATGQVTAL-TD-TTRDESPSFAPNGRY 384 (427)
T ss_pred EEEEECCCCce-EEEecCCCCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCCCeEEc-cC-CCCccCceECCCCCE
Confidence 6654 44443 22222223344567875 557887766554 699999987665432 22 233467899999999
Q ss_pred EEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCC
Q 001534 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599 (1058)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~ 599 (1058)
|+..+..+ +...+++.+. +|.....+..+.+ .+...+|+|-
T Consensus 385 l~~~~~~~-g~~~l~~~~~-~g~~~~~l~~~~g-~~~~p~wsp~ 425 (427)
T PRK02889 385 ILYATQQG-GRSVLAAVSS-DGRIKQRLSVQGG-DVREPSWGPF 425 (427)
T ss_pred EEEEEecC-CCEEEEEEEC-CCCceEEeecCCC-CCCCCccCCC
Confidence 99877533 3456777777 4655555554433 5666777763
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-11 Score=128.64 Aligned_cols=500 Identities=11% Similarity=0.136 Sum_probs=294.5
Q ss_pred CCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCc------------eeeeeeeecCcCCeEEEEEecCCCceEEEEEc
Q 001534 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE------------LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474 (1058)
Q Consensus 407 h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~------------~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~ 474 (1058)
......|++|+....++|+|+.||.++|..+.+... +....++.||.+.|.-+.|+...+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 445688999999999999999999999998765321 111236789999999999998887 688999
Q ss_pred CCCcEEEEEcCCCceeEEee--CCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCC
Q 001534 475 DDKMIKVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD 552 (1058)
Q Consensus 475 ~d~~v~vwd~~~~~~~~~l~--~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 552 (1058)
.+|.|.+|-+-.|.....+. ...+.|.+++|+ .+|..+...-.||.|.+=.++. ..+.--...+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn--~dG~kIcIvYeDGavIVGsvdG-NRIwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN--LDGTKICIVYEDGAVIVGSVDG-NRIWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEc--CCCcEEEEEEccCCEEEEeecc-ceecchhcchheccceeeccc
Confidence 99999999998887554332 244568888888 5668888888888887665542 222221222334557899999
Q ss_pred CCEEEEEecCCCCCceEEEeeCCCCc-------eeEeecCC---CCCceeEEEE--------cCCCCEEEEEeCCCeEEE
Q 001534 553 GTRLFSCGTSKEGESHLVEWNESEGA-------IKRTYSGF---RKRSLGVVQF--------DTTRNRFLAAGDEFQIKF 614 (1058)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~~~~-------~~~~~~~~---~~~~v~~~~~--------~~~~~~l~~~~~dg~i~i 614 (1058)
.+.++.+-. ++.+.++|....- +.....+. ....+..+.| -|+...|+++-.+|.+.|
T Consensus 168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 988776643 6779999865321 10111110 1112444444 357788999999999888
Q ss_pred EECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCcccc
Q 001534 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 694 (1058)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1058)
..-.+......+... -.+..+.|+++|..||+++.+..--- +..++
T Consensus 244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~-~~d~n------------------------------ 289 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADE-PTDSN------------------------------ 289 (1189)
T ss_pred hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccC-ccccc------------------------------
Confidence 755443333333222 25778999999999999987632100 00000
Q ss_pred ccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCc
Q 001534 695 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 774 (1058)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1058)
.|.++..- +.....+.. ....
T Consensus 290 ---------------------------------------------------~v~Fysp~----G~i~gtlkv----pg~~ 310 (1189)
T KOG2041|consen 290 ---------------------------------------------------KVHFYSPY----GHIVGTLKV----PGSC 310 (1189)
T ss_pred ---------------------------------------------------eEEEeccc----hhheEEEec----CCce
Confidence 00000000 001112222 2245
Q ss_pred eEEEEEccCCceEEEeeccceEEEEEcccCC----------CCCCCcccccccccccCCCCCCccccccCCCCCCCCCee
Q 001534 775 VVRLIYTNSGLSLLALASNAVHKLWKWQRTE----------RNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAA 844 (1058)
Q Consensus 775 i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~ 844 (1058)
|++++|-..|-.++.+ .|+.|.+=+++..- +...+.-.....+.+||..+.+..... -....
T Consensus 311 It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~-------V~~~~ 382 (1189)
T KOG2041|consen 311 ITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKT-------VTHFE 382 (1189)
T ss_pred eeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhh-------hccee
Confidence 6777776666555443 35555554444320 001111122223668888776644322 23356
Q ss_pred EEEEccCCcEEEEEe-CCeEEEEECC-CceEEEEec-----CC--CC---CeEEEEEeCCCCCEEEEEeCCCeEEEEEcc
Q 001534 845 CIALSKNDSYVMSAS-GGKVSLFNMM-TFKVMTMFM-----SP--PP---AATFLAFHPQDNNIIAIGMEDSSVQIYNVR 912 (1058)
Q Consensus 845 ~~~~s~d~~~la~~s-dg~i~iwd~~-~~~~~~~~~-----~~--~~---~i~~l~~s~~~~~~lasg~~dg~I~iwd~~ 912 (1058)
+++|+.+--.|+.-. +|.|.-++.- +...+..+. |. .. .|.-.-..- ++..++.++.+ .+.+|...
T Consensus 383 ~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~ 460 (1189)
T KOG2041|consen 383 NMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYV 460 (1189)
T ss_pred ehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEe
Confidence 788877766666555 5666655321 111111110 10 11 122222222 66777777777 57888652
Q ss_pred ccee--------------------------------EEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 001534 913 VDEV--------------------------------KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960 (1058)
Q Consensus 913 ~~~~--------------------------------~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~ 960 (1058)
..+. .+++.|..++|.+++.| .++|..+-..|.|.-+.+..+-...
T Consensus 461 ~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n 538 (1189)
T KOG2041|consen 461 LPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTN 538 (1189)
T ss_pred ccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeee
Confidence 1110 13456667888888886 6788889999999999998854332
Q ss_pred ceeeecCCCCCCCCCCeeEEEEcCCCcEEEEE-eCCeEEEEeC----CCCeeeEEee---ccccceEEccCCcEEEE
Q 001534 961 SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS----KLECSRSVSF---LSLCPYVFGVSSIFLLS 1029 (1058)
Q Consensus 961 ~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~-~d~~i~vwd~----~~~~~~~~~~---~~~~~~~~s~~~~~l~~ 1029 (1058)
...+ . ..|..+....+...+++- .-|.+.+.|+ ++..+..+.. ..+=.+.|..|...|+.
T Consensus 539 ~y~~----n-----~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llA 606 (1189)
T KOG2041|consen 539 SYPV----N-----PSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLA 606 (1189)
T ss_pred cccc----C-----chheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHh
Confidence 2111 1 347888888888887774 5666666666 4444443322 22444555555544443
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9e-09 Score=124.03 Aligned_cols=244 Identities=9% Similarity=0.121 Sum_probs=158.7
Q ss_pred CCCcCeEEEEECCCCCEEEEEeCCCeEEEE----EecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEE
Q 001534 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLY----TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1058)
Q Consensus 406 ~h~~~v~~~~~spd~~~l~~~~~d~~i~vw----d~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~v 481 (1058)
...+.|.++.|-++...++.+..+|.|.+. +..+.. +. ....-...|.+++||||++ +|+....++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 355789999999999999999999999999 444322 22 2233567899999999999 6666666777776
Q ss_pred EEcCCCc------------------------eeEEeeCCC------------------CCe----EEEEecccCCccEEE
Q 001534 482 WDVVAGR------------------------KQYTFEGHE------------------APV----YSVCPHHKESIQFIF 515 (1058)
Q Consensus 482 wd~~~~~------------------------~~~~l~~~~------------------~~v----~~~~~~~~~~~~~l~ 515 (1058)
-+ .+.. .-..|.|-. +.+ ..+.++..+||.+++
T Consensus 147 mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFA 225 (928)
T PF04762_consen 147 MT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFA 225 (928)
T ss_pred Ee-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEE
Confidence 53 1111 111121100 001 223344458889999
Q ss_pred EEeC---C---CeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecC---C
Q 001534 516 STAI---D---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG---F 586 (1058)
Q Consensus 516 s~s~---d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~ 586 (1058)
+.+. . +.+|+|+-+ +.....-..-.+--.+++|.|.|+++++... ..+...|.+|.- +|-.-..|.- .
T Consensus 226 Vss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfEr-NGLrhgeF~l~~~~ 302 (928)
T PF04762_consen 226 VSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFER-NGLRHGEFTLRFDP 302 (928)
T ss_pred EEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEec-CCcEeeeEecCCCC
Confidence 8875 2 569999855 3333333333334457899999999998875 233456777774 3444333332 2
Q ss_pred CCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eEEEEecCCCCCCcceEEEeC-CCCEEEEEECCCcEEEEEC
Q 001534 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--MLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILAN 661 (1058)
Q Consensus 587 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~ 661 (1058)
....+..+.|++++..|+..-.|. |.+|...+.. +.+.+..... ..+..+.|+| +...|...+.+|.+..++.
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 333789999999999999977665 9999988765 3333433322 2345699999 4556777777778777665
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-12 Score=146.39 Aligned_cols=237 Identities=12% Similarity=0.103 Sum_probs=153.0
Q ss_pred ceecCCccccceeEeecCCCCeeEEEEecCCCeEEEEEeC--CCcEEEEEccCccccccCcceeeccccccccccccccc
Q 001534 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1058)
Q Consensus 328 ~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1058)
.+|.+|...........+...+.+.+|||||+.++.+... +..|.+||+.+++... +.
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~ 244 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VA 244 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------ec
Confidence 4555665444444444577889999999999865544322 3469999998876432 22
Q ss_pred CCCcCeEEEEECCCCCEEEE-EeCCC--eEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEc-CCCc--E
Q 001534 406 DAAISVNRCVWGPDGLMLGV-AFSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKM--I 479 (1058)
Q Consensus 406 ~h~~~v~~~~~spd~~~l~~-~~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~-~d~~--v 479 (1058)
.+.+...+.+|+|||+.|+. .+.+| .|.+||+.+++.. .+..+.......+|+|||+. ++.++ .++. |
T Consensus 245 ~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~i 318 (433)
T PRK04922 245 SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQI 318 (433)
T ss_pred cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceE
Confidence 33444567899999998864 45555 5999999887532 34455555678899999994 55444 4454 6
Q ss_pred EEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCC---eEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEE
Q 001534 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1058)
Q Consensus 480 ~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1058)
.++|+.+++.. .+..+.......+|+| +|+.++..+.++ .|.+||+.+++.. .+. +........|+|||+++
T Consensus 319 y~~dl~~g~~~-~lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i 393 (433)
T PRK04922 319 YRVAASGGSAE-RLTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMV 393 (433)
T ss_pred EEEECCCCCeE-EeecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEE
Confidence 66777676543 3332334445678885 456777655433 5899998776554 333 22244567999999998
Q ss_pred EEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcC
Q 001534 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1058)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1058)
+..+.. .+...|++++.. +.....+..+.+ .+...+|+|
T Consensus 394 ~~~s~~-~g~~~L~~~~~~-g~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 394 LYATRE-GGRGVLAAVSTD-GRVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred EEEEec-CCceEEEEEECC-CCceEEcccCCC-CCCCCccCC
Confidence 877643 245679999985 444555554433 456667765
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-12 Score=146.09 Aligned_cols=238 Identities=13% Similarity=0.085 Sum_probs=157.9
Q ss_pred CcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeC---CCeEEEEEecCCCceee
Q 001534 369 GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQ 445 (1058)
Q Consensus 369 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~---d~~i~vwd~~~~~~~~~ 445 (1058)
..|.+||..++.... +..+...+.+.+|+|||+.|+..+. +..|.+||+.+++..
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-- 241 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-- 241 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--
Confidence 468889886543221 4457778999999999999998864 346999999887542
Q ss_pred eeeeecCcCCeEEEEEecCCCceEEEEEcCCC--cEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEe-CCCe
Q 001534 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGK 522 (1058)
Q Consensus 446 ~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~--~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s-~d~~ 522 (1058)
.+..+.+...+++|+|||+. ++++.+.++ .|++||+.+++. ..+..+.......+|+| +|+.++.++ .+|.
T Consensus 242 --~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~ 315 (433)
T PRK04922 242 --LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGR 315 (433)
T ss_pred --EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCC
Confidence 23334445568899999996 344555555 699999988874 44555655566788885 456776665 3454
Q ss_pred --EEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCC
Q 001534 523 --IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1058)
Q Consensus 523 --i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1058)
|.++|+.+++.. .+..........+|+|||++++....+ ++...|++||+.+++.. .+... . ......|+|+|
T Consensus 316 ~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~-~Lt~~-~-~~~~p~~spdG 390 (433)
T PRK04922 316 PQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVR-TLTPG-S-LDESPSFAPNG 390 (433)
T ss_pred ceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeE-ECCCC-C-CCCCceECCCC
Confidence 666666554432 233333445578999999999876532 23457999999887765 33321 1 23457899999
Q ss_pred CEEEEEeC---CCeEEEEECCCCceEEEEecCCCCCCcceEEEeC
Q 001534 601 NRFLAAGD---EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1058)
Q Consensus 601 ~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1058)
++++..+. .+.+.++++.. .....+..+. ..+...+|+|
T Consensus 391 ~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 391 SMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred CEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence 98887664 34688888854 4445454332 2456677776
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.8e-12 Score=131.39 Aligned_cols=277 Identities=12% Similarity=0.152 Sum_probs=185.8
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEE
Q 001534 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1058)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~ 425 (1058)
..+.+..++|++|+ ++|.+ .+..|+|++..+++.+.. -....+.++.|||-|.+|.+
T Consensus 34 ~~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T 90 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLT 90 (566)
T ss_pred CCcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEE---------------------eccceeeeeeeccccccccc
Confidence 44578899999998 66654 578999999998853321 11226899999999999987
Q ss_pred E-----eCC-----CeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeC
Q 001534 426 A-----FSK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1058)
Q Consensus 426 ~-----~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~ 495 (1058)
= ..+ ..+.+|++.++.... .+......-++..|++|.. ++.--..+.+++|++.+-+.+. -.-
T Consensus 91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl 163 (566)
T KOG2315|consen 91 WEPWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKL 163 (566)
T ss_pred ccccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eee
Confidence 2 122 347799999843222 2222222226899999886 4444446689999876633221 112
Q ss_pred CCCCeEEEEecccCCccEEEE-----EeCCCeEEEE--------------------------------------------
Q 001534 496 HEAPVYSVCPHHKESIQFIFS-----TAIDGKIKAW-------------------------------------------- 526 (1058)
Q Consensus 496 ~~~~v~~~~~~~~~~~~~l~s-----~s~d~~i~~w-------------------------------------------- 526 (1058)
|...|+.+.++|.+.-..+++ .+.-..+++|
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 455566666665533223322 1222334444
Q ss_pred -------------eCCCCCceEEecC-CCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCcee
Q 001534 527 -------------LYDYLGSRVDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLG 592 (1058)
Q Consensus 527 -------------d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~ 592 (1058)
+++ +....... ..++|.++.|+|+|+-++++.. -.-..+-++|++ +.++..+... +-+
T Consensus 244 n~SYYGEq~Lyll~t~--g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyG--fMPAkvtifnlr-~~~v~df~eg---pRN 315 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQ--GESVSVPLLKEGPVHDVTWSPSGREFAVVYG--FMPAKVTIFNLR-GKPVFDFPEG---PRN 315 (566)
T ss_pred CccccccceEEEEEec--CceEEEecCCCCCceEEEECCCCCEEEEEEe--cccceEEEEcCC-CCEeEeCCCC---Ccc
Confidence 222 11111122 2569999999999998887653 246679999987 6666666543 456
Q ss_pred EEEEcCCCCEEEEEe---CCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEEC------CCcEEEEECCC
Q 001534 593 VVQFDTTRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSD 663 (1058)
Q Consensus 593 ~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~~~ 663 (1058)
++-|+|.|++++.+| -.|.|.|||+.+.+++..+.... .+-+.|+|||+++++++. |+.++||+...
T Consensus 316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~----tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN----TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred ceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC----ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 788999999999987 45899999999988888887653 367899999999999875 68899999865
Q ss_pred C
Q 001534 664 G 664 (1058)
Q Consensus 664 ~ 664 (1058)
.
T Consensus 392 ~ 392 (566)
T KOG2315|consen 392 S 392 (566)
T ss_pred c
Confidence 4
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.9e-14 Score=142.52 Aligned_cols=230 Identities=15% Similarity=0.178 Sum_probs=191.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCce
Q 001534 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489 (1058)
Q Consensus 410 ~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~ 489 (1058)
.-..+.++.+|++|+.|+..|.|-.+|+.++.... ++. -...|.++.|..+.+ ++|++ ....++||| ..|..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~AVA-QK~y~yvYD-~~GtE 202 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFAVA-QKKYVYVYD-NNGTE 202 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHHhh-hhceEEEec-CCCcE
Confidence 45689999999999999999999999999976554 332 345799999998887 56655 477999999 88999
Q ss_pred eEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceE
Q 001534 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1058)
Q Consensus 490 ~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1058)
++.++.| ..|..+.|-|.. -+|++++..|.++.-|+.+++.+..+....+.+..|.-+|-+..+-.|. ..|+|
T Consensus 203 lHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh----snGtV 275 (545)
T KOG1272|consen 203 LHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH----SNGTV 275 (545)
T ss_pred Eeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC----CCceE
Confidence 9988755 568888888764 5778888899999999999999988888888999999999888887776 38899
Q ss_pred EEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEE
Q 001534 570 VEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAV 649 (1058)
Q Consensus 570 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 649 (1058)
.+|.....+++..+..|.+ +|.++++.++|++++++|.|..++|||++....+.++... .+...+++|..| .||.
T Consensus 276 SlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp---~~a~~ls~Sqkg-lLA~ 350 (545)
T KOG1272|consen 276 SLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP---HPASNLSLSQKG-LLAL 350 (545)
T ss_pred EecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecC---CCcccccccccc-ceee
Confidence 9999999999999999998 8999999999999999999999999999998877776552 246778888766 3444
Q ss_pred EECCCcEEEEE
Q 001534 650 TTSDNGIKILA 660 (1058)
Q Consensus 650 ~~~dg~i~iw~ 660 (1058)
+ ....|.||.
T Consensus 351 ~-~G~~v~iw~ 360 (545)
T KOG1272|consen 351 S-YGDHVQIWK 360 (545)
T ss_pred e-cCCeeeeeh
Confidence 3 444899995
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.4e-12 Score=143.43 Aligned_cols=225 Identities=12% Similarity=0.079 Sum_probs=146.8
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCC---CeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEE
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~ 480 (1058)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 34577789999999999999887643 469999999876432 2334455678999999995 344667788766
Q ss_pred EEE--cCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeC-CCeEEEEeCCCC-CceEEecCCCCcEEEEEEcCCCCEE
Q 001534 481 VWD--VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRL 556 (1058)
Q Consensus 481 vwd--~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~-d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1058)
||. +..+. ...+..+........|+| ||+.++..+. ++...+|.++.. +....+...........|+|||+++
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~I 342 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLL 342 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEE
Confidence 665 44443 555665666667778885 4566665554 566677765432 2222222233344568899999999
Q ss_pred EEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCC---eEEEEECCCCceEEEEecCCCCC
Q 001534 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF---QIKFWDMDNMNMLTTVDADGGLP 633 (1058)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~ 633 (1058)
+..+..+ +...|++||+.+++....... . ......|+|+|+.++.++.++ .+.+.++ ++.....+..+.+
T Consensus 343 a~~s~~~-g~~~I~v~d~~~g~~~~lt~~-~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g-- 415 (427)
T PRK02889 343 AYISRVG-GAFKLYVQDLATGQVTALTDT-T--RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG-- 415 (427)
T ss_pred EEEEccC-CcEEEEEEECCCCCeEEccCC-C--CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--
Confidence 8766422 234799999988875443222 1 235678999999988876443 3556666 3555555544322
Q ss_pred CcceEEEeCC
Q 001534 634 ASPRLRFNKE 643 (1058)
Q Consensus 634 ~v~~~~~s~~ 643 (1058)
.+...+|+|-
T Consensus 416 ~~~~p~wsp~ 425 (427)
T PRK02889 416 DVREPSWGPF 425 (427)
T ss_pred CCCCCccCCC
Confidence 4566778763
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-11 Score=125.75 Aligned_cols=331 Identities=15% Similarity=0.177 Sum_probs=204.7
Q ss_pred CCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEe-----CC-----C
Q 001534 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-----DE-----F 610 (1058)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~d-----g 610 (1058)
...+...++|++|++++.+. +..+.|++..++..+.+.... .+..+.|+|.+++|.+-- .+ -
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~p 105 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKNASNP 105 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCCCCCC
Confidence 34577889999999999885 566999998888644443332 477899999999887631 22 3
Q ss_pred eEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCC
Q 001534 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1058)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1058)
.+.+|+++++.....+......+ .+..|+.|..+.| --..+.+.+|+..+.......+.....
T Consensus 106 n~~v~~vet~~~~s~~q~k~Q~~--W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~kl~~~~i-------------- 168 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKKMQNG--WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHKLSVSGI-------------- 168 (566)
T ss_pred ceeeeeeccceehhheehhhhcC--cccccccchhhhh-hhhcceEEEEecCCccceeeeeeccce--------------
Confidence 47799999966665555443322 5788888876433 233568999998764333322221110
Q ss_pred ccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCcccc---ccccccccccccCCc--CCccceeEEe
Q 001534 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV---AEDVDKIKSWRIPDI--SDPSQIKALR 765 (1058)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~w~~~~~--~~~~~~~~~~ 765 (1058)
..+.+++..+. +--...+ -+.-..|++|..... ......+.+.
T Consensus 169 -------------~~f~lSpgp~~-------------------~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF 216 (566)
T KOG2315|consen 169 -------------TMLSLSPGPEP-------------------PFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF 216 (566)
T ss_pred -------------eeEEecCCCCC-------------------ceEEEEccCCCCCCcEEEEeccccccccchhhhcccc
Confidence 01111111000 0000001 112256788877621 1111222221
Q ss_pred cCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeE
Q 001534 766 LPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 845 (1058)
Q Consensus 766 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~ 845 (1058)
...=..+.|.+-|.-|++.... |++.... ......++.+.++. |......+.. .++|.+
T Consensus 217 ------kadkvqm~WN~~gt~LLvLast------dVDktn~----SYYGEq~Lyll~t~-g~s~~V~L~k----~GPVhd 275 (566)
T KOG2315|consen 217 ------KADKVQMKWNKLGTALLVLAST------DVDKTNA----SYYGEQTLYLLATQ-GESVSVPLLK----EGPVHD 275 (566)
T ss_pred ------ccceeEEEeccCCceEEEEEEE------eecCCCc----cccccceEEEEEec-CceEEEecCC----CCCceE
Confidence 1122346677766654433221 1111111 11122234444444 4433334555 889999
Q ss_pred EEEccCCcEEEEEe---CCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCC---CeEEEEEcccceeEEE
Q 001534 846 IALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---SSVQIYNVRVDEVKTK 919 (1058)
Q Consensus 846 ~~~s~d~~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d---g~I~iwd~~~~~~~~~ 919 (1058)
+.|+|+++-++++. --++.|||+. +..+..+ ..++=+++-|+| .|++|+.++-+ |.|.|||+.+.+++..
T Consensus 276 v~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~ 351 (566)
T KOG2315|consen 276 VTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAK 351 (566)
T ss_pred EEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccc
Confidence 99999999888775 4789999996 6666555 467778999999 89998887755 6899999999888888
Q ss_pred EeCCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEeCCC
Q 001534 920 LKGHQNRITGLAFSPTLNALVSSGA------DAQLCMWSIDK 955 (1058)
Q Consensus 920 l~~h~~~v~~l~~spd~~~l~s~s~------D~~i~iwd~~~ 955 (1058)
+..-.. +-..|+|||++++|++. |+.++||+...
T Consensus 352 ~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 352 FKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred cccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 875443 44789999999999874 67899999976
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.9e-10 Score=124.77 Aligned_cols=195 Identities=15% Similarity=0.178 Sum_probs=151.9
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCc-----CeEEEEECCCCC
Q 001534 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI-----SVNRCVWGPDGL 421 (1058)
Q Consensus 347 ~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~spd~~ 421 (1058)
+.|....+.-+.+ .++.++.+..+.+||...+..... ..+.. ...-+.++++.-
T Consensus 88 ~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~--------------------i~~~er~~l~~~~~~g~s~~~~ 146 (967)
T KOG0974|consen 88 DWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSK--------------------IQSDERCTLYSSLIIGDSAEEL 146 (967)
T ss_pred ccccccchhhhcc-eEEEEEcCceEEEEecccCceehh--------------------cCCCceEEEEeEEEEeccCcEE
Confidence 3444455666665 567778899999999988765442 01111 222345677777
Q ss_pred EEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeE-EeeCCCCCe
Q 001534 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPV 500 (1058)
Q Consensus 422 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~-~l~~~~~~v 500 (1058)
++++|+.-+.|.+|+....+... .+.+|.+.|.++.|+-||. ++++.|+|.++++|++++++... ..-+|+..|
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv 221 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARV 221 (967)
T ss_pred EEEeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCccccccccee
Confidence 99999999999999998433222 5789999999999999999 89999999999999999988776 677899999
Q ss_pred EEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCC-CCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCC
Q 001534 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1058)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1058)
+.++|.+. .+++++.|-+.++|+.+..... .+..| ...+..++..++...+++++. |+.+++|++..
T Consensus 222 w~~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 222 WACCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNG 289 (967)
T ss_pred EEEEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhc
Confidence 99999864 8999999999999976543333 55555 447899999888888888874 88899999864
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.6e-12 Score=122.58 Aligned_cols=155 Identities=17% Similarity=0.265 Sum_probs=111.1
Q ss_pred eEEEEccCCcEEEEEeC-----------CeEEEEECCC-ceEEEEecC-CCCCeEEEEEeCCCCCEEEE--EeCCCeEEE
Q 001534 844 ACIALSKNDSYVMSASG-----------GKVSLFNMMT-FKVMTMFMS-PPPAATFLAFHPQDNNIIAI--GMEDSSVQI 908 (1058)
Q Consensus 844 ~~~~~s~d~~~la~~sd-----------g~i~iwd~~~-~~~~~~~~~-~~~~i~~l~~s~~~~~~las--g~~dg~I~i 908 (1058)
..+.|+++|.+|++-.+ +...+|.+.. ......+.- ..+.|.+++|+| +|+.+|+ |..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence 46789999988775421 2355555532 223333332 345699999999 7776554 446679999
Q ss_pred EEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCC
Q 001534 909 YNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD---AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 985 (1058)
Q Consensus 909 wd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d 985 (1058)
||++ ++.+..+. ...+..+.|||+|++|++++.+ |.|.+||+++.+.+.. .. | ..++.++||||
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~-----~~-~----~~~t~~~WsPd 154 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST-----FE-H----SDATDVEWSPD 154 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeec-----cc-c----CcEEEEEEcCC
Confidence 9996 56566664 5678899999999999998754 5699999997664322 22 2 23689999999
Q ss_pred CcEEEEE-------eCCeEEEEeCCCCeeeEEee
Q 001534 986 QTHLLVV-------HESQISVYDSKLECSRSVSF 1012 (1058)
Q Consensus 986 ~~~l~~~-------~d~~i~vwd~~~~~~~~~~~ 1012 (1058)
|++++++ .|+.++||+..|+.+.....
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~~ 188 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQGRLLYKKPF 188 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEecCeEeEecch
Confidence 9999995 27889999998887776543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.7e-10 Score=121.14 Aligned_cols=289 Identities=12% Similarity=0.209 Sum_probs=177.5
Q ss_pred EEEEecCCCCCceEEEeeC--CCCceeEeecCCCCCceeEEEEcCCCCEEEEEeC----CCeEEEEECCCC--ce--EEE
Q 001534 556 LFSCGTSKEGESHLVEWNE--SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD----EFQIKFWDMDNM--NM--LTT 625 (1058)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~--~~--~~~ 625 (1058)
+++++......+.|+.|++ .++++...-..........++++|++++|+++.+ +|.|..|++... ++ +..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 3444443333466888777 5555432221112224567889999999999876 578999887764 33 233
Q ss_pred EecCCCCCCcceEEEeCCCCEEEEEEC-CCcEEEEECCCCceeeeccc--CCcccccCCCCCCCCCCCccccccCCCccc
Q 001534 626 VDADGGLPASPRLRFNKEGSLLAVTTS-DNGIKILANSDGVRLLRMLE--GRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1058)
Q Consensus 626 ~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1058)
....+. ....++++|++++|+++.. +|.|.++++...-.+..... .+....
T Consensus 82 ~~~~g~--~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g------------------------ 135 (345)
T PF10282_consen 82 VPSGGS--SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSG------------------------ 135 (345)
T ss_dssp EEESSS--CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEE------------------------
T ss_pred eccCCC--CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCC------------------------
Confidence 332222 3467999999999999874 89999999976422222110 000000
Q ss_pred ccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEcc
Q 001534 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN 782 (1058)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 782 (1058)
.-+.........++.++|
T Consensus 136 --------------------------------------------------------------~~~~rq~~~h~H~v~~~p 153 (345)
T PF10282_consen 136 --------------------------------------------------------------PNPDRQEGPHPHQVVFSP 153 (345)
T ss_dssp --------------------------------------------------------------SSTTTTSSTCEEEEEE-T
T ss_pred --------------------------------------------------------------CcccccccccceeEEECC
Confidence 000011345667899999
Q ss_pred CCceEEEeec-cceEEEEEcccCCCCCCCcccccccccccCCCCCCcc---ccccCCCCCCCCCeeEEEEccCCcEEEEE
Q 001534 783 SGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLM---TNDINESKPTEESAACIALSKNDSYVMSA 858 (1058)
Q Consensus 783 ~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~~i~~~~~s~d~~~la~~ 858 (1058)
+|+++++... ...|.+|++.... +.+. ...+. . ....+.++|+||++++.+.
T Consensus 154 dg~~v~v~dlG~D~v~~~~~~~~~--------------------~~l~~~~~~~~~---~-G~GPRh~~f~pdg~~~Yv~ 209 (345)
T PF10282_consen 154 DGRFVYVPDLGADRVYVYDIDDDT--------------------GKLTPVDSIKVP---P-GSGPRHLAFSPDGKYAYVV 209 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEE-TTS---------------------TEEEEEEEECS---T-TSSEEEEEE-TTSSEEEEE
T ss_pred CCCEEEEEecCCCEEEEEEEeCCC--------------------ceEEEeeccccc---c-CCCCcEEEEcCCcCEEEEe
Confidence 9998887654 3578888765321 1110 00111 2 5667899999999999887
Q ss_pred e--CCeEEEEECC--Cce--EEEEecC----C--CCCeEEEEEeCCCCCEEEEEe-CCCeEEEEEcc--cce--eEEEEe
Q 001534 859 S--GGKVSLFNMM--TFK--VMTMFMS----P--PPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVR--VDE--VKTKLK 921 (1058)
Q Consensus 859 s--dg~i~iwd~~--~~~--~~~~~~~----~--~~~i~~l~~s~~~~~~lasg~-~dg~I~iwd~~--~~~--~~~~l~ 921 (1058)
. +++|.+|++. ++. .+..... . ......++++| ||++|.++. .+..|.+|+++ +++ .+..+.
T Consensus 210 ~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~ 288 (345)
T PF10282_consen 210 NELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP 288 (345)
T ss_dssp ETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE
T ss_pred cCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe
Confidence 7 7899999998 443 2222221 1 12578899999 888877655 55689999994 343 344444
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCC--CCc
Q 001534 922 GHQNRITGLAFSPTLNALVSSG-ADAQLCMWSID--KWE 957 (1058)
Q Consensus 922 ~h~~~v~~l~~spd~~~l~s~s-~D~~i~iwd~~--~~~ 957 (1058)
........++++|+|++|+++. .++.|.+|+++ +|.
T Consensus 289 ~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 289 TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGK 327 (345)
T ss_dssp ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCc
Confidence 4445589999999999999877 56689999774 555
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-10 Score=117.98 Aligned_cols=341 Identities=11% Similarity=0.143 Sum_probs=207.7
Q ss_pred EEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEE
Q 001534 525 AWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL 604 (1058)
Q Consensus 525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 604 (1058)
+|...+......+....-++..+.+||.|.+|++.. ...|.+|+-..+..+..+... .|..+.|+|.+++|.
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----~~~V~~~~g~~~~~l~~~~~~---~V~~~~fSP~~kYL~ 87 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEH-----AAGVECWGGPSKAKLVRFRHP---DVKYLDFSPNEKYLV 87 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhh-----ccceEEccccchhheeeeecC---CceecccCcccceee
Confidence 444444334444444556888999999999999875 344999998777655555432 688899999999999
Q ss_pred EEeCCC---------------eEEEEECCCCceEEEEecCCCCCCcc-eEEEeCCCCEEEEEECCCcEEEEECCCCceee
Q 001534 605 AAGDEF---------------QIKFWDMDNMNMLTTVDADGGLPASP-RLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 668 (1058)
Q Consensus 605 ~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 668 (1058)
+-+..+ .+.+||..+|..+..+.......... -+.|+-+.+++|-.. ...+.|+++ ++ ...
T Consensus 88 tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~-n~~ 164 (561)
T COG5354 88 TWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TD-NIE 164 (561)
T ss_pred eeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CC-ccc
Confidence 865433 49999999999999887654421123 678888887776553 347888876 32 100
Q ss_pred ecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCcccccccccccc
Q 001534 669 RMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIK 748 (1058)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 748 (1058)
.++..
T Consensus 165 ----~~p~~----------------------------------------------------------------------- 169 (561)
T COG5354 165 ----EHPFK----------------------------------------------------------------------- 169 (561)
T ss_pred ----cCchh-----------------------------------------------------------------------
Confidence 00000
Q ss_pred ccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCc
Q 001534 749 SWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL 828 (1058)
Q Consensus 749 ~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1058)
.+ ....|...+++|.|. ...+..|--. .
T Consensus 170 --------------~l------r~~gi~dFsisP~~n-------~~~la~~tPE----------------------k--- 197 (561)
T COG5354 170 --------------NL------RPVGILDFSISPEGN-------HDELAYWTPE----------------------K--- 197 (561)
T ss_pred --------------hc------cccceeeEEecCCCC-------CceEEEEccc----------------------c---
Confidence 00 123455566666541 1112222100 0
Q ss_pred cccccCCCCCCCCCeeEEEEccCCcEEEEEeCCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEE---------
Q 001534 829 MTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI--------- 899 (1058)
Q Consensus 829 ~~~~~~~~~h~~~~i~~~~~s~d~~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~las--------- 899 (1058)
. +.++.++||.+..++.+.+-.--.-.-..+.|.+ .|.+|..
T Consensus 198 ------~----------------------~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksn 248 (561)
T COG5354 198 ------L----------------------NKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKSN 248 (561)
T ss_pred ------C----------------------CCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeeecc
Confidence 0 0012222232222221111000000011122222 2222211
Q ss_pred --EeCCCeEEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCccccceeeecCCCCCCCCC
Q 001534 900 --GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 975 (1058)
Q Consensus 900 --g~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 975 (1058)
--....++++++....+ .....-.++|...+|.|+++.+++++ .+..+.++|+... ...-.+.+..
T Consensus 249 KsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-----l~~~~Pe~~r---- 318 (561)
T COG5354 249 KSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-----LRFYFPEQKR---- 318 (561)
T ss_pred cceeccceEEEEeeccccc-ceeccccccceeeeecccCCceeEEecccccceeecccccc-----eEEecCCccc----
Confidence 01234688888874433 33335678999999999998877654 7888999999873 1233333332
Q ss_pred CeeEEEEcCCCcEEEE-E---eCCeEEEEeC--CCCeeeEEeeccccceEEccCCcEEEEEEC------CCeEEEEcCCC
Q 001534 976 GETKVQFHNDQTHLLV-V---HESQISVYDS--KLECSRSVSFLSLCPYVFGVSSIFLLSTLT------KLSVAVHDPLM 1043 (1058)
Q Consensus 976 ~v~~~~fs~d~~~l~~-~---~d~~i~vwd~--~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------d~~v~vw~~~~ 1043 (1058)
..+.|||.++++++ | .-|.+.+||. ...++..+.....+...|+|||.|+.++.. |..+.+|+...
T Consensus 319 --NT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 319 --NTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred --ccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 67899999999998 4 4577999999 566666777777777789999999977654 77899999887
Q ss_pred C
Q 001534 1044 K 1044 (1058)
Q Consensus 1044 ~ 1044 (1058)
+
T Consensus 397 ~ 397 (561)
T COG5354 397 A 397 (561)
T ss_pred c
Confidence 6
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-11 Score=138.40 Aligned_cols=239 Identities=11% Similarity=0.010 Sum_probs=155.8
Q ss_pred CcceecCCccccceeEeecCCCCeeEEEEecCCCeEEEEEe--CCCcEEEEEccCccccccCcceeeccccccccccccc
Q 001534 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1058)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1058)
...+|.+|...........+...+.+.+|||||+.++.+.. .+..|.+||+.+++...
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-------------------- 240 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-------------------- 240 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------
Confidence 34666666544444444457889999999999986555443 24689999998876432
Q ss_pred ccCCCcCeEEEEECCCCCEEEE-EeCCCe--EEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEc-CCC--
Q 001534 404 LNDAAISVNRCVWGPDGLMLGV-AFSKHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDK-- 477 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~-~~~d~~--i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~-~d~-- 477 (1058)
+..+.+.+.+.+|||||+.|+. .+.++. |.+||+.++... .+..+........|+|||+. ++..+ .++
T Consensus 241 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~ 314 (435)
T PRK05137 241 VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSP 314 (435)
T ss_pred eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCC
Confidence 3445667788999999998764 455554 777788876532 44456666778999999995 44444 333
Q ss_pred cEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCC---CeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCC
Q 001534 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1058)
Q Consensus 478 ~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1058)
.|++||+.+++. ..+..+...+....|+| +|+.|+..+.+ ..|.+||+..... ..+. ....+..+.|+|||+
T Consensus 315 ~Iy~~d~~g~~~-~~lt~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~ 389 (435)
T PRK05137 315 QLYVMNADGSNP-RRISFGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGR 389 (435)
T ss_pred eEEEEECCCCCe-EEeecCCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCC
Confidence 688889766654 44444455566778885 45677766543 3578888765443 2232 233567889999999
Q ss_pred EEEEEecCCCCC--ceEEEeeCCCCceeEeecCCCCCceeEEEEcC
Q 001534 555 RLFSCGTSKEGE--SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1058)
Q Consensus 555 ~l~~~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1058)
.|+..+...... ..++++|+..+.. ..+.. .. .+...+|+|
T Consensus 390 ~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~-~~~~p~Wsp 432 (435)
T PRK05137 390 VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PG-DASDPAWSP 432 (435)
T ss_pred EEEEEEccCCCCCcceEEEEECCCCce-EEccC-CC-CccCcccCC
Confidence 988765432221 4688899876544 34432 22 355566765
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.3e-10 Score=120.41 Aligned_cols=308 Identities=14% Similarity=0.233 Sum_probs=186.4
Q ss_pred EEEEeCC----CeEEEEeCCCCCceEEe---cCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCC--Cce--eEe
Q 001534 514 IFSTAID----GKIKAWLYDYLGSRVDY---DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE--GAI--KRT 582 (1058)
Q Consensus 514 l~s~s~d----~~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~--~~~ 582 (1058)
++.|+.. +.|.+|+++........ .........++++|++++|++........+.|..|++.. +++ +..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 3445444 68888888443333221 123445667899999999999875332477888888765 332 333
Q ss_pred ecCCCCCceeEEEEcCCCCEEEEEe-CCCeEEEEECCC-CceEEE---Eec--------CCCCCCcceEEEeCCCCEEEE
Q 001534 583 YSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDN-MNMLTT---VDA--------DGGLPASPRLRFNKEGSLLAV 649 (1058)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~---~~~--------~~~~~~v~~~~~s~~~~~l~~ 649 (1058)
... .+.....++++|++++++++. .+|.|.++++.. +..... +.. ........++.++|+|+++++
T Consensus 82 ~~~-~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 82 VPS-GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEE-SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred ecc-CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 332 222456799999999999987 689999999987 443332 211 012234678999999999888
Q ss_pred EEC-CCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCC
Q 001534 650 TTS-DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI 728 (1058)
Q Consensus 650 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1058)
... ...|++|++......+...
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~--------------------------------------------------------- 183 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPV--------------------------------------------------------- 183 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEE---------------------------------------------------------
T ss_pred EecCCCEEEEEEEeCCCceEEEe---------------------------------------------------------
Confidence 754 3478888886552111110
Q ss_pred CCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeec-cceEEEEEcccCCCC
Q 001534 729 DGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-NAVHKLWKWQRTERN 807 (1058)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~vw~~~~~~~~ 807 (1058)
..+.+ ........++|+|+++++++..+ ++.|.++++...
T Consensus 184 ---------------------------------~~~~~---~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~--- 224 (345)
T PF10282_consen 184 ---------------------------------DSIKV---PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS--- 224 (345)
T ss_dssp ---------------------------------EEEEC---STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT---
T ss_pred ---------------------------------ecccc---ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc---
Confidence 00000 03345678999999998877766 578999887621
Q ss_pred CCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe--CCeEEEEECC--Cce--EEEEecCCC
Q 001534 808 PSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMM--TFK--VMTMFMSPP 881 (1058)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s--dg~i~iwd~~--~~~--~~~~~~~~~ 881 (1058)
.+.......+ . .+.....+ ......+++||||++|.++. .++|.+|++. +++ .+..+....
T Consensus 225 -~g~~~~~~~~---~-----~~~~~~~~----~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G 291 (345)
T PF10282_consen 225 -DGSLTEIQTI---S-----TLPEGFTG----ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGG 291 (345)
T ss_dssp -TTEEEEEEEE---E-----SCETTSCS----SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESS
T ss_pred -CCceeEEEEe---e-----eccccccc----cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCC
Confidence 1111000000 0 00000111 33678999999999999887 6889999993 333 334444344
Q ss_pred CCeEEEEEeCCCCCEEEEEe-CCCeEEEEEcc--cceeEEEEe-CCCCCeEEEEE
Q 001534 882 PAATFLAFHPQDNNIIAIGM-EDSSVQIYNVR--VDEVKTKLK-GHQNRITGLAF 932 (1058)
Q Consensus 882 ~~i~~l~~s~~~~~~lasg~-~dg~I~iwd~~--~~~~~~~l~-~h~~~v~~l~~ 932 (1058)
...+.++++| +|++|+++. .++.|.+|+++ +|.+...-. ..-....||.|
T Consensus 292 ~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 292 KFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp SSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 5589999999 888888777 55689999774 666443321 23345667765
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-10 Score=120.08 Aligned_cols=342 Identities=9% Similarity=0.069 Sum_probs=212.3
Q ss_pred CCCCCCCCCCC---CCccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCCchhhhhhccc
Q 001534 236 AHGPFQPVVSP---SPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRT 312 (1058)
Q Consensus 236 ~h~~~~~~~~~---~~fs~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (1058)
.|.-|.-+-|+ +.+||.|.||++... . ...+|..+..+ ...+.+.
T Consensus 24 ~~~~~~~~~~p~~~~~~SP~G~~l~~~~~--------~-----------------------~V~~~~g~~~~-~l~~~~~ 71 (561)
T COG5354 24 IHTRFESENWPVAYVSESPLGTYLFSEHA--------A-----------------------GVECWGGPSKA-KLVRFRH 71 (561)
T ss_pred ccccccccCcchhheeecCcchheehhhc--------c-----------------------ceEEccccchh-heeeeec
Confidence 34455556676 669999999998321 1 12234444333 2233334
Q ss_pred CCcceeeecCCCCCcceecCCccccceeEeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecc
Q 001534 313 GQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI 392 (1058)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~ 392 (1058)
.++..+.|+|.+.++..|.....- | -...++|.+ .+..+.|||..+|..+..+..
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~--------~----pe~e~sp~~--------~~n~~~vwd~~sg~iv~sf~~----- 126 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPII--------E----PEIEISPFT--------SKNNVFVWDIASGMIVFSFNG----- 126 (561)
T ss_pred CCceecccCcccceeeeeccCCcc--------C----hhhccCCcc--------ccCceeEEeccCceeEeeccc-----
Confidence 455556666666666665544210 0 011122221 234799999999988765322
Q ss_pred cccccccccccccCCCcC--eE-EEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceE
Q 001534 393 SAASMPLQNALLNDAAIS--VN-RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469 (1058)
Q Consensus 393 ~~~~~~~~~~~~~~h~~~--v~-~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~ 469 (1058)
-..+ .. -+.|+-|.+++|-- ....+.|+++...-.....+.+. ...|...+|+|.++...
T Consensus 127 --------------~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~ 189 (561)
T COG5354 127 --------------ISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDE 189 (561)
T ss_pred --------------cCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCce
Confidence 2222 33 57899998888766 33469999973222222222222 35688999999865434
Q ss_pred EEE-----EcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEe-----------CCCeEEEEeCCCCCc
Q 001534 470 IVT-----CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-----------IDGKIKAWLYDYLGS 533 (1058)
Q Consensus 470 l~s-----~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s-----------~d~~i~~wd~~~~~~ 533 (1058)
|+. .+.++++++|.+..++.+.+-.-....-..+.|++.+ ++++.-- ....+.++++.....
T Consensus 190 la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g--~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i 267 (561)
T COG5354 190 LAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG--KYLLVLVMTHTKSNKSYFGESNLYLLRITERSI 267 (561)
T ss_pred EEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC--ceEEEEEEEeeecccceeccceEEEEeeccccc
Confidence 443 4678899999998777665433223333445565443 4443321 135577887774443
Q ss_pred eEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCC---C
Q 001534 534 RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---F 610 (1058)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g 610 (1058)
.... ...++|...+|.|.++.+++++. -....+.++|++.. ....+... .-+.+.|+|.+++++.++-| |
T Consensus 268 ~V~~-~~~~pVhdf~W~p~S~~F~vi~g--~~pa~~s~~~lr~N-l~~~~Pe~---~rNT~~fsp~~r~il~agF~nl~g 340 (561)
T COG5354 268 PVEK-DLKDPVHDFTWEPLSSRFAVISG--YMPASVSVFDLRGN-LRFYFPEQ---KRNTIFFSPHERYILFAGFDNLQG 340 (561)
T ss_pred ceec-cccccceeeeecccCCceeEEec--ccccceeecccccc-eEEecCCc---ccccccccCcccEEEEecCCcccc
Confidence 3333 55779999999999999887763 25777999999855 44444332 33567799999999998744 7
Q ss_pred eEEEEECCCCceEE-EEecCCCCCCcceEEEeCCCCEEEEEEC------CCcEEEEECCCC
Q 001534 611 QIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSDG 664 (1058)
Q Consensus 611 ~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~~~~ 664 (1058)
.+.+||....-... .+.+. ....+.|+||++++.+... |..+.||++...
T Consensus 341 ni~i~~~~~rf~~~~~~~~~----n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 341 NIEIFDPAGRFKVAGAFNGL----NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred ceEEeccCCceEEEEEeecC----CceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 89999988655444 55443 3467889999999887753 788999998654
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-09 Score=108.55 Aligned_cols=301 Identities=13% Similarity=0.172 Sum_probs=190.7
Q ss_pred CCeEEEEeCCCCCceE---EecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCC--CCceeEeecCC-CCCceeE
Q 001534 520 DGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAIKRTYSGF-RKRSLGV 593 (1058)
Q Consensus 520 d~~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~~~~~~~~-~~~~v~~ 593 (1058)
+..|++|++++..... .........+-++|+|++++|+++...++ .+.|..|.+. +|++...-... .+.+-..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~-~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE-EGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCC-cCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 5679999998544333 23334557788999999999998876432 5556555444 46543221111 1113477
Q ss_pred EEEcCCCCEEEEEe-CCCeEEEEECCC-CceEEE---EecCCC-------CCCcceEEEeCCCCEEEEEEC-CCcEEEEE
Q 001534 594 VQFDTTRNRFLAAG-DEFQIKFWDMDN-MNMLTT---VDADGG-------LPASPRLRFNKEGSLLAVTTS-DNGIKILA 660 (1058)
Q Consensus 594 ~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~---~~~~~~-------~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~ 660 (1058)
++++++|++++++. ..|.|.++-+.. |.+... +...+. ...+....+.|++++|++..- .-.|.+|+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 99999999999987 568899998865 443322 221111 122678899999999988754 23788898
Q ss_pred CCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCcccc
Q 001534 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 740 (1058)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1058)
+..+. +...-..
T Consensus 174 ~~dg~-L~~~~~~------------------------------------------------------------------- 185 (346)
T COG2706 174 LDDGK-LTPADPA------------------------------------------------------------------- 185 (346)
T ss_pred cccCc-ccccccc-------------------------------------------------------------------
Confidence 87551 1100000
Q ss_pred ccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeec-cceEEEEEcccCCCCCCCccccccccc
Q 001534 741 AEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQ 819 (1058)
Q Consensus 741 ~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~ 819 (1058)
.+ ......+.++|.|++++.....+ +++|.+|.+... .+++.
T Consensus 186 ----------~v-----------------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~----~g~~~------ 228 (346)
T COG2706 186 ----------EV-----------------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA----VGKFE------ 228 (346)
T ss_pred ----------cc-----------------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC----CceEE------
Confidence 00 02344577999999998887777 799999987642 01110
Q ss_pred ccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe--CCeEEEEECCC--ceE--EEEecCCCCCeEEEEEeCCC
Q 001534 820 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMT--FKV--MTMFMSPPPAATFLAFHPQD 893 (1058)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s--dg~i~iwd~~~--~~~--~~~~~~~~~~i~~l~~s~~~ 893 (1058)
.+.+-..+...+.+ .....++.+++||++|.++. .+.|.+|.+.. +++ ......+....+.+.|++ +
T Consensus 229 --~lQ~i~tlP~dF~g----~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~ 301 (346)
T COG2706 229 --ELQTIDTLPEDFTG----TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP-S 301 (346)
T ss_pred --EeeeeccCccccCC----CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-C
Confidence 11111123333555 77788999999999999987 46798988764 332 222233444578999999 8
Q ss_pred CCEEEEEeCCC-eEEEEEcc--cceeEEEEe-CCCCCeEEEEEc
Q 001534 894 NNIIAIGMEDS-SVQIYNVR--VDEVKTKLK-GHQNRITGLAFS 933 (1058)
Q Consensus 894 ~~~lasg~~dg-~I~iwd~~--~~~~~~~l~-~h~~~v~~l~~s 933 (1058)
+++|+++.+++ .|.+|..+ +|++-.... .......||.|.
T Consensus 302 g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 302 GRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 88888887765 68888765 555433322 344456677764
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-11 Score=119.92 Aligned_cols=262 Identities=12% Similarity=0.158 Sum_probs=174.9
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCccee-ecccccccccccccccCCCcCeEEEEECCCCC--E
Q 001534 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKV-WDISAASMPLQNALLNDAAISVNRCVWGPDGL--M 422 (1058)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~--~ 422 (1058)
.+-|.++.|..+|. +||+|..+|.|.++.-.....- .+.+.. +....+. +..-.--.-...|+.+.|.+++. .
T Consensus 25 adiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepE--FDYLkSleieEKinkIrw~~~~n~a~ 100 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPE--FDYLKSLEIEEKINKIRWLDDGNLAE 100 (433)
T ss_pred hcceeeEEeecccc-eEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcc--cchhhhhhhhhhhhhceecCCCCccE
Confidence 45799999999998 7999999999999975543220 111110 0000000 00000011245789999999765 5
Q ss_pred EEEEeCCCeEEEEEecCCCcee------------------e--------------ee-eeecCcCCeEEEEEecCCCceE
Q 001534 423 LGVAFSKHIVHLYTYNPTGELR------------------Q--------------HL-EIDAHVGGVNDIAFAHPNKQLC 469 (1058)
Q Consensus 423 l~~~~~d~~i~vwd~~~~~~~~------------------~--------------~~-~~~~h~~~v~~~~fs~d~~~~~ 469 (1058)
++..+.|.+|++|.+....... . .+ --.+|+--|+++.++.|++ .
T Consensus 101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E--t 178 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE--T 178 (433)
T ss_pred EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc--e
Confidence 6677799999999886432111 0 00 1135777899999999998 5
Q ss_pred EEEEcCCCcEEEEEcCCCce---eEEeeCC-----CCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCc------eE
Q 001534 470 IVTCGDDKMIKVWDVVAGRK---QYTFEGH-----EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS------RV 535 (1058)
Q Consensus 470 l~s~~~d~~v~vwd~~~~~~---~~~l~~~-----~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~------~~ 535 (1058)
++++ .|=.|-+|+++--.. +..++.+ ..-|++..|+|... +.++-.+..|+|++.|++.... .+
T Consensus 179 ~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 179 FLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred Eeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence 6655 488999999864322 2222222 24578888998754 7888899999999999984221 11
Q ss_pred Ee----------cCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCC-CCceeEeecCCCCC-----------c---
Q 001534 536 DY----------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKR-----------S--- 590 (1058)
Q Consensus 536 ~~----------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~-----------~--- 590 (1058)
.. ..--..|..+.|+++|+++++-. --+|.+||+. ..+++.+++.|..- .
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~Ifd 331 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFD 331 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhh
Confidence 11 11123678899999999999863 4679999994 46677777666321 1
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001534 591 LGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1058)
Q Consensus 591 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 620 (1058)
-..++|+.++.++++|+....+++++...|
T Consensus 332 KFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 332 KFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred eeEEEEcCCcceEecccccceEEEecCCCC
Confidence 235789999999999999999999996544
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-11 Score=120.93 Aligned_cols=181 Identities=15% Similarity=0.213 Sum_probs=137.9
Q ss_pred ccCCceE-EEeecc--ceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccC--CcEE
Q 001534 781 TNSGLSL-LALASN--AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN--DSYV 855 (1058)
Q Consensus 781 s~~g~~l-~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d--~~~l 855 (1058)
++....+ ++|+.. ..+.+||+... .++|..+.-..-.-.+.- .-.++++.|-+. ...+
T Consensus 157 ~~~~p~Iva~GGke~~n~lkiwdle~~-------------~qiw~aKNvpnD~L~LrV----PvW~tdi~Fl~g~~~~~f 219 (412)
T KOG3881|consen 157 TDTDPYIVATGGKENINELKIWDLEQS-------------KQIWSAKNVPNDRLGLRV----PVWITDIRFLEGSPNYKF 219 (412)
T ss_pred CCCCCceEecCchhcccceeeeecccc-------------eeeeeccCCCCcccccee----eeeeccceecCCCCCceE
Confidence 3333444 447777 78899998753 345554332211111222 556778888887 7889
Q ss_pred EEEe-CCeEEEEECCCc-eEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEE-EeCCCCCeEEEEE
Q 001534 856 MSAS-GGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAF 932 (1058)
Q Consensus 856 a~~s-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~-l~~h~~~v~~l~~ 932 (1058)
|++. -+.+++||...+ +++..+.-....++++...| ++++|.+|..-|.+..||+++++.+.. +.+-.+.|++|..
T Consensus 220 at~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~ 298 (412)
T KOG3881|consen 220 ATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHC 298 (412)
T ss_pred EEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceEEE
Confidence 9998 799999999875 46677777788999999999 999999999999999999999998776 8999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcE
Q 001534 933 SPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 988 (1058)
Q Consensus 933 spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~ 988 (1058)
+|..++||++|-|+.|||+|+++.+.+....+. +.++.+.+.++-+.
T Consensus 299 hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK---------s~lt~il~~~~~n~ 345 (412)
T KOG3881|consen 299 HPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK---------SRLTFILLRDDVNI 345 (412)
T ss_pred cCCCceEEeeccceeEEEeecccchhhhhhhhh---------ccccEEEecCCccc
Confidence 999999999999999999999997665543333 22577777666443
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-11 Score=119.20 Aligned_cols=110 Identities=19% Similarity=0.316 Sum_probs=91.1
Q ss_pred CCCeeEEEEccCCcEEEEEe---CCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCC---CeEEEEEccc
Q 001534 840 EESAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---SSVQIYNVRV 913 (1058)
Q Consensus 840 ~~~i~~~~~s~d~~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d---g~I~iwd~~~ 913 (1058)
.++|.+++|+|+|+.+|+.. +..|.+||++ ++.+..+. ...++.+.||| +|++|++|+.+ |.|.+||+.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 55799999999999887653 5789999996 66666664 56788999999 99999998744 6799999998
Q ss_pred ceeEEEEeCCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEeCCC
Q 001534 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGA------DAQLCMWSIDK 955 (1058)
Q Consensus 914 ~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~------D~~i~iwd~~~ 955 (1058)
.+.+.... |. .++.++|||||+++++++. |+.++||+...
T Consensus 135 ~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 135 KKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 88887765 43 3789999999999999874 78899999964
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-09 Score=120.88 Aligned_cols=280 Identities=13% Similarity=0.106 Sum_probs=191.1
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEE
Q 001534 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1058)
Q Consensus 347 ~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~ 426 (1058)
+++++.++-. +++|| | ..-.|.+||+.++..+... .+...+..|...=.-- -.+.+++++
T Consensus 8 ~~l~~~~~~~--~~lla-g-~gp~i~~yd~~s~~li~~~-------------~~~~~~~~H~~e~~~~---l~~~~~v~~ 67 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLA-G-SGPEILVYDLSSGCLIRHL-------------IQSKILEVHRGEGKVK---LLSGKIVTC 67 (967)
T ss_pred ccccchhhcc--ceeee-c-CCCceEEeeCCchhHhhhh-------------hhhcccccccccccce---eccceEEEE
Confidence 4556666555 34544 3 3568999999998766421 1111234441000000 023345555
Q ss_pred eCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCe--EEEE
Q 001534 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV--YSVC 504 (1058)
Q Consensus 427 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v--~~~~ 504 (1058)
..-+.+..=+..-. .+..-...|....+..+.+ .++.+..+..+.+||...+..+..+....... .++-
T Consensus 68 ~~~~~v~~~~~~~~-------~~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~ 138 (967)
T KOG0974|consen 68 AKSDEVYVKEASNQ-------IIERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLI 138 (967)
T ss_pred Eeecceeecchhhh-------hhhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEE
Confidence 44333333222211 1112233444556666677 57777778899999998888777665433211 1222
Q ss_pred ecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeE-ee
Q 001534 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR-TY 583 (1058)
Q Consensus 505 ~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~~ 583 (1058)
+-...+.-++++|+.-+.|.+|+.........+.+|.+.+.++.++.||+++++++. |..+++|++.+++... ..
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~~~ 214 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGCTG 214 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCccc
Confidence 222344478999999999999999865556678999999999999999999999984 8889999999988766 56
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCC
Q 001534 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1058)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1058)
-+|.. .+..++|.|+ .+++++.|.+.++|+.. +..+..+..|.. ..+..++..++...+++++.||.+++|++..
T Consensus 215 fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 215 FGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccccc-eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 67777 7888999987 89999999999999765 445556666654 3688999999999999999999999999865
Q ss_pred C
Q 001534 664 G 664 (1058)
Q Consensus 664 ~ 664 (1058)
.
T Consensus 290 r 290 (967)
T KOG0974|consen 290 R 290 (967)
T ss_pred c
Confidence 3
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-08 Score=119.87 Aligned_cols=421 Identities=14% Similarity=0.150 Sum_probs=242.3
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEE----EccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCC
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLW----EVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~ 420 (1058)
..+.|.++.|-++.. -++.+..+|.|.+. +..+...-. ...-...|.+++||||+
T Consensus 74 ~~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSE-SLCIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCC-cEEEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence 357899999999997 46667889999999 444433211 23356789999999999
Q ss_pred CEEEEEeCCCeEEEEEecC-------------C----------Cceeee----------------------eeeecCcCC
Q 001534 421 LMLGVAFSKHIVHLYTYNP-------------T----------GELRQH----------------------LEIDAHVGG 455 (1058)
Q Consensus 421 ~~l~~~~~d~~i~vwd~~~-------------~----------~~~~~~----------------------~~~~~h~~~ 455 (1058)
..||..+.++++.+.+-+= + +.-.++ ..+. +...
T Consensus 133 Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~ 211 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG 211 (928)
T ss_pred CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC
Confidence 9999999999888764210 0 000000 0011 2334
Q ss_pred eEEEEEecCCCceEEEEEcC------CCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeC---CCeEEEE
Q 001534 456 VNDIAFAHPNKQLCIVTCGD------DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAW 526 (1058)
Q Consensus 456 v~~~~fs~d~~~~~l~s~~~------d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~---d~~i~~w 526 (1058)
-..++|-.||+ ++|+.+. -..++||+ +.|....+-..-.+--.+++|.|+ |++|++.-. ...|.+|
T Consensus 212 ~~~ISWRGDG~--yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPs--G~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 212 RVRISWRGDGE--YFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPS--GNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred ceEEEECCCCc--EEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCC--CCEEEEEEEcCCCcEEEEE
Confidence 56789999999 6776653 25899999 667755544434444456677754 578888764 3456666
Q ss_pred eCCCCCceEEe--c--CCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCc--eeEeecCCCCCceeEEEEcCCC
Q 001534 527 LYDYLGSRVDY--D--APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLGVVQFDTTR 600 (1058)
Q Consensus 527 d~~~~~~~~~~--~--~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~ 600 (1058)
. +++-....+ . .....|..+.|++|+..|+.... ..|.+|-..+-. +.+.+.......+..+.|+|..
T Consensus 287 E-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~-----~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~ 360 (928)
T PF04762_consen 287 E-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE-----DRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK 360 (928)
T ss_pred e-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec-----CCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC
Confidence 4 222222222 2 34568999999999999998762 239999887654 3344443333345569999965
Q ss_pred C-EEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCccccc
Q 001534 601 N-RFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1058)
Q Consensus 601 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 679 (1058)
. .|...+.+|.+..++..-. ...... .+|+..-++..-+...+.+-.+.... .+
T Consensus 361 p~~L~v~t~~g~~~~~~~~~~----v~~s~~---------~~~~D~g~vaVIDG~~lllTpf~~a~-----VP------- 415 (928)
T PF04762_consen 361 PLRLHVLTSNGQYEIYDFAWD----VSRSPG---------SSPNDNGTVAVIDGNKLLLTPFRRAV-----VP------- 415 (928)
T ss_pred CCEEEEEecCCcEEEEEEEEE----EEecCC---------CCccCceEEEEEeCCeEEEecccccC-----CC-------
Confidence 4 4666666677766554310 000000 11212222222222345554332220 00
Q ss_pred CCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCcc
Q 001534 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1058)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~ 759 (1058)
. +-
T Consensus 416 ----P-------------------------------------------------------------------------PM 418 (928)
T PF04762_consen 416 ----P-------------------------------------------------------------------------PM 418 (928)
T ss_pred ----c-------------------------------------------------------------------------hH
Confidence 0 00
Q ss_pred ceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCC
Q 001534 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839 (1058)
Q Consensus 760 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 839 (1058)
....+. -...|.+++|++++..+++...||.+.+|.+.............. ............... .
T Consensus 419 s~~~l~-----~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~- 485 (928)
T PF04762_consen 419 SSYELE-----LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLL-----SSISLDSMDISDSEL--P- 485 (928)
T ss_pred hceEEc-----CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchh-----hhccccccccccccc--c-
Confidence 011122 335789999999999899999999999998765422210000000 000000000000000 1
Q ss_pred CCCeeEEEEccCCcEEEEEe-C---CeEEEEECCCce---EEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcc
Q 001534 840 EESAACIALSKNDSYVMSAS-G---GKVSLFNMMTFK---VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 912 (1058)
Q Consensus 840 ~~~i~~~~~s~d~~~la~~s-d---g~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~ 912 (1058)
...+..++|..+...++... + ..+.+++....+ .......-...+..+...+ +...++.-..+|.|...+..
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~ 564 (928)
T PF04762_consen 486 LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSD 564 (928)
T ss_pred cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecC
Confidence 55678899988888777766 3 458888874332 2233332344555555555 44446666778888866654
Q ss_pred cc
Q 001534 913 VD 914 (1058)
Q Consensus 913 ~~ 914 (1058)
..
T Consensus 565 ~~ 566 (928)
T PF04762_consen 565 GE 566 (928)
T ss_pred CC
Confidence 43
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-10 Score=120.95 Aligned_cols=318 Identities=11% Similarity=0.173 Sum_probs=204.4
Q ss_pred cceeeecCCCCCcceec------CCccccceeEeecCCCCeeEEEEecCCCeEEEEEe-----------CCCcEEEEEcc
Q 001534 315 SDEVSFAGVAHTPNVYS------QDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT-----------NVGDISLWEVG 377 (1058)
Q Consensus 315 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~-----------~dg~v~iwd~~ 377 (1058)
..-+.+||.|.++..+. |.+.....++.+.|. .|.-+.|||+.+ +|++=+ ....++|||+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEK-YLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHHhccCC-CceeeecCCccc-eEEEecCCccccCcccCCCceEEEEEcc
Confidence 44577888887766553 444444555566665 799999999998 455543 12579999999
Q ss_pred CccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeE
Q 001534 378 SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVN 457 (1058)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~ 457 (1058)
+|.......+ +.+....-.-+.||.|++++|.-..+ .|.||+..+-..+. .+.+ .-..|.
T Consensus 291 tG~lkrsF~~----------------~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld-~Ksl--ki~gIr 350 (698)
T KOG2314|consen 291 TGLLKRSFPV----------------IKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLD-KKSL--KISGIR 350 (698)
T ss_pred ccchhcceec----------------cCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeec-cccc--CCcccc
Confidence 9987764221 11111122347899999999987665 69999877633221 1111 245688
Q ss_pred EEEEecCCCceEEEEEcC-----CCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEe----------CCCe
Q 001534 458 DIAFAHPNKQLCIVTCGD-----DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA----------IDGK 522 (1058)
Q Consensus 458 ~~~fs~d~~~~~l~s~~~-----d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s----------~d~~ 522 (1058)
...|+|.+. +||--.. -..+.+-.+.+++.+++-.-|. |..+..+...+|++|..-- .-..
T Consensus 351 ~FswsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n 426 (698)
T KOG2314|consen 351 DFSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN 426 (698)
T ss_pred CcccCCCcc--eEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEee
Confidence 999999987 6664332 2356677777777777655444 3344444445667776532 1123
Q ss_pred EEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCC-C---ceeEeecCCCCCceeEEEEcC
Q 001534 523 IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-G---AIKRTYSGFRKRSLGVVQFDT 598 (1058)
Q Consensus 523 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~---~~~~~~~~~~~~~v~~~~~~~ 598 (1058)
+-|+.++..........-...|...+|-|.|+.+++.+.. +...++.+|...+ . .++..+.. ...+.+.|+|
T Consensus 427 ~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~-~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsP 502 (698)
T KOG2314|consen 427 LEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN-TVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSP 502 (698)
T ss_pred EEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc-ccccceeEEEeecCCCchhhhhhhcc---cccceEEEcC
Confidence 5566666554444433445678899999999998866542 3466788887763 2 23333433 2567899999
Q ss_pred CCCEEEEEe---CCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEEC------CCcEEEEECCCC
Q 001534 599 TRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSDG 664 (1058)
Q Consensus 599 ~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~~~~ 664 (1058)
.|++++.++ ..|.+.++|+........ ....| ...+.+.|.|.|+|+++++. |..-++|++...
T Consensus 503 kG~fvvva~l~s~~g~l~F~D~~~a~~k~~-~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 503 KGRFVVVAALVSRRGDLEFYDTDYADLKDT-ASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred CCcEEEEEEecccccceEEEecchhhhhhc-cCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 999988864 678999999885332222 22222 24678999999999999876 455677776543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.9e-11 Score=130.64 Aligned_cols=245 Identities=9% Similarity=0.044 Sum_probs=149.5
Q ss_pred cceecCCccccceeEeecCCCCeeEEEEecCCCe--EEEEEeCCC--cEEEEEccCccccccCcceeecccccccccccc
Q 001534 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT--ILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1058)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~--lla~g~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1058)
-.+|..|...............+..-+|||||+. ++++...+| .|.+.++.+++...
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~------------------- 225 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK------------------- 225 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-------------------
Confidence 3455555443333333335567788899999975 333444443 67788888776433
Q ss_pred cccCCCcCeEEEEECCCCCEEEEEeC-----CCeEEEEEecCCC--ceeeeeeeecCcCCeEEEEEecCCCceEEEEEcC
Q 001534 403 LLNDAAISVNRCVWGPDGLMLGVAFS-----KHIVHLYTYNPTG--ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475 (1058)
Q Consensus 403 ~~~~h~~~v~~~~~spd~~~l~~~~~-----d~~i~vwd~~~~~--~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~ 475 (1058)
+....+.....+|||||+.||..+. +..+.+|++.++. .... ...++.......+|+|||+. ++++...
T Consensus 226 -lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~-Laf~s~~ 301 (428)
T PRK01029 226 -ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR-LVFVSNK 301 (428)
T ss_pred -eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE-EEEEECC
Confidence 2223444567899999999987653 2234557776532 1221 22222334567899999995 2333445
Q ss_pred CCcEEEE--EcCC-CceeEEeeCCCCCeEEEEecccCCccEEEEEeCC---CeEEEEeCCCCCceEEecCCCCcEEEEEE
Q 001534 476 DKMIKVW--DVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAY 549 (1058)
Q Consensus 476 d~~v~vw--d~~~-~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 549 (1058)
+|...+| ++.. +.....+..+...+....|+|+ |+.|+..+.+ ..|.+||+.+++.... ......+....|
T Consensus 302 ~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPD--G~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~w 378 (428)
T PRK01029 302 DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPD--GKKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSW 378 (428)
T ss_pred CCCceEEEEECcccccceEEeccCCCCccceeECCC--CCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEE
Confidence 6655555 4432 3334555555566778888865 4677665543 4689999987765443 323345678999
Q ss_pred cCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCC
Q 001534 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1058)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1058)
+|||+.|+..+.. .+...|+++|+.+++....... .+ .+...+|+|-.
T Consensus 379 SpDG~~L~f~~~~-~g~~~L~~vdl~~g~~~~Lt~~-~g-~~~~p~Ws~~~ 426 (428)
T PRK01029 379 AIDSLHLVYSAGN-SNESELYLISLITKKTRKIVIG-SG-EKRFPSWGAFP 426 (428)
T ss_pred CCCCCEEEEEECC-CCCceEEEEECCCCCEEEeecC-CC-cccCceecCCC
Confidence 9999998865532 3467799999987765444432 22 45567787643
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.3e-10 Score=116.20 Aligned_cols=324 Identities=10% Similarity=0.176 Sum_probs=194.6
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeC-----------CCe
Q 001534 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-----------EFQ 611 (1058)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~ 611 (1058)
.-+-+.|||.|.||++-. ..-|.+|--.+-..++.|.. . .|.-+.|||+.+||++-+. ...
T Consensus 212 Tetyv~wSP~GTYL~t~H-----k~GI~lWGG~~f~r~~RF~H-p--~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFH-----KQGIALWGGESFDRIQRFYH-P--GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeeEEecCCceEEEEEe-----ccceeeecCccHHHHHhccC-C--CceeeecCCccceEEEecCCccccCcccCCCce
Confidence 345789999999999986 33499997665555555542 2 5888999999999999651 257
Q ss_pred EEEEECCCCceEEEEecCCCCC-CcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCC
Q 001534 612 IKFWDMDNMNMLTTVDADGGLP-ASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1058)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1058)
++|||+.+|.....+....... .-.-..||.|++++|....+ .|.||+..+- ..+.+.+.
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf----~lld~Ksl-------------- 344 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSF----MLLDKKSL-------------- 344 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCce----eeeccccc--------------
Confidence 9999999999998887643322 23457899999999988775 7888876432 11111100
Q ss_pred ccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCc
Q 001534 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 770 (1058)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~ 770 (1058)
T Consensus 345 -------------------------------------------------------------------------------- 344 (698)
T KOG2314|consen 345 -------------------------------------------------------------------------------- 344 (698)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEcc
Q 001534 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1058)
Q Consensus 771 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1058)
.-..|....|+|.+..|+.-... +.. - ..
T Consensus 345 ki~gIr~FswsP~~~llAYwtpe-------------------------------~~~----------~-pa--------- 373 (698)
T KOG2314|consen 345 KISGIRDFSWSPTSNLLAYWTPE-------------------------------TNN----------I-PA--------- 373 (698)
T ss_pred CCccccCcccCCCcceEEEEccc-------------------------------ccC----------C-cc---------
Confidence 12234555666665544421110 000 0 11
Q ss_pred CCcEEEEEeCCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEE----------EeCCCeEEEEEccccee-EEE
Q 001534 851 NDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI----------GMEDSSVQIYNVRVDEV-KTK 919 (1058)
Q Consensus 851 d~~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~las----------g~~dg~I~iwd~~~~~~-~~~ 919 (1058)
++.+..+.+++.+++-.-+.-.=..+-|-. +|.+|+. .+.=..+.|+.+..... +..
T Consensus 374 -----------rvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ 441 (698)
T KOG2314|consen 374 -----------RVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV 441 (698)
T ss_pred -----------eEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence 122333333333332222111111222333 3444432 12222466666654432 222
Q ss_pred EeCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEE----
Q 001534 920 LKGHQNRITGLAFSPTLNALVSSGA---DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV---- 992 (1058)
Q Consensus 920 l~~h~~~v~~l~~spd~~~l~s~s~---D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~---- 992 (1058)
+. -...|...+|-|.|..+++-+. ..++.+|.+++....-.........+ ...+.|||.|++++++
T Consensus 442 ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~------~N~vfwsPkG~fvvva~l~s 514 (698)
T KOG2314|consen 442 VE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKF------ANTVFWSPKGRFVVVAALVS 514 (698)
T ss_pred ee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccc------cceEEEcCCCcEEEEEEecc
Confidence 22 3467889999999988776553 35799999885221112222233323 4889999999999984
Q ss_pred eCCeEEEEeCCCC---eeeEEeeccccceEEccCCcEEEEEEC------CCeEEEEcCCC
Q 001534 993 HESQISVYDSKLE---CSRSVSFLSLCPYVFGVSSIFLLSTLT------KLSVAVHDPLM 1043 (1058)
Q Consensus 993 ~d~~i~vwd~~~~---~~~~~~~~~~~~~~~s~~~~~l~~~~~------d~~v~vw~~~~ 1043 (1058)
..|.+..+|.+.. ..........+.+.|.|.|+|++++++ |..-++|+..+
T Consensus 515 ~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 515 RRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred cccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 4788999999542 223333355888999999999999877 44556666443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-10 Score=131.71 Aligned_cols=237 Identities=13% Similarity=0.084 Sum_probs=147.5
Q ss_pred eecCCccccceeEeecCCCCeeEEEEecCCCeEEEEEeCC--CcEEEEEccCccccccCcceeecccccccccccccccC
Q 001534 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1058)
Q Consensus 329 ~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1058)
++..|...........+...+...+|||||+.++++...+ ..|.+||+.+++... +..
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~ 240 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITN 240 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccC
Confidence 4444544444444456778899999999998665555433 368999998876432 222
Q ss_pred CCcCeEEEEECCCCCEEEEE-eCCC--eEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCC--cEEE
Q 001534 407 AAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKV 481 (1058)
Q Consensus 407 h~~~v~~~~~spd~~~l~~~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~--~v~v 481 (1058)
..+.+...+|||||+.|+.. +.+| .|.+||+.++... .+..+........|+|||+. ++++...++ .|++
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYK 315 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEE
Confidence 33345578999999988754 4444 6888899886532 34445556777899999995 333443343 5777
Q ss_pred EEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeC-CC--eEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEE
Q 001534 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1058)
Q Consensus 482 wd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~-d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1058)
+|+.+++... +...........|+|+ |+.++..+. ++ .|.+||+.+++.... .. ........|+|||+.++.
T Consensus 316 ~d~~~g~~~~-lt~~~~~~~~~~~Spd--g~~i~~~~~~~~~~~l~~~dl~tg~~~~l-t~-~~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 316 VNVNGGRAER-VTFVGNYNARPRLSAD--GKTLVMVHRQDGNFHVAAQDLQRGSVRIL-TD-TSLDESPSVAPNGTMLIY 390 (430)
T ss_pred EECCCCCEEE-eecCCCCccceEECCC--CCEEEEEEccCCceEEEEEECCCCCEEEc-cC-CCCCCCceECCCCCEEEE
Confidence 7887776433 2222222344567754 467766654 33 478889887654332 22 222335689999999987
Q ss_pred EecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcC
Q 001534 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1058)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1058)
.+.. .+...+++++.. |.....+....+ .+...+|+|
T Consensus 391 ~~~~-~g~~~l~~~~~~-g~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 391 ATRQ-QGRGVLMLVSIN-GRVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEec-CCceEEEEEECC-CCceEECcCCCC-CcCCCccCC
Confidence 7642 235668888875 444444443332 455566765
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-09 Score=108.00 Aligned_cols=270 Identities=12% Similarity=0.148 Sum_probs=175.8
Q ss_pred cccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeecc---ceEEEEEcccCCCCCCCcccccccccc
Q 001534 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN---AVHKLWKWQRTERNPSGKATANVAPQL 820 (1058)
Q Consensus 744 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~ 820 (1058)
++.|..|++.+.... ...+.+ ....+.++-++++|+++.|.++..+ |.+-.|.++
T Consensus 15 s~gI~v~~ld~~~g~--l~~~~~--v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD------------------ 72 (346)
T COG2706 15 SQGIYVFNLDTKTGE--LSLLQL--VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRID------------------ 72 (346)
T ss_pred CCceEEEEEeCcccc--cchhhh--ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEc------------------
Confidence 567888888742211 111111 1256778899999999999888765 566666553
Q ss_pred cCCCCCCccc-cccCCCCCCCCCeeEEEEccCCcEEEEEe--CCeEEEEECCC-ceEEEE--ecCCCCC----------e
Q 001534 821 WQPPSGTLMT-NDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMT-FKVMTM--FMSPPPA----------A 884 (1058)
Q Consensus 821 ~~~~~~~~~~-~~~~~~~h~~~~i~~~~~s~d~~~la~~s--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i 884 (1058)
..+|++.. ..... . ..+...++++++|++|++++ .|.|.++-++. |.+... ...|.+. +
T Consensus 73 --~~~G~Lt~ln~~~~--~-g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~ 147 (346)
T COG2706 73 --PDDGRLTFLNRQTL--P-GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHV 147 (346)
T ss_pred --CCCCeEEEeecccc--C-CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCcc
Confidence 23333211 11111 1 23337899999999999998 68999999965 433221 2224433 7
Q ss_pred EEEEEeCCCCCEEEEEeCC-CeEEEEEcccceeEEEEe---CCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCC--c
Q 001534 885 TFLAFHPQDNNIIAIGMED-SSVQIYNVRVDEVKTKLK---GHQNRITGLAFSPTLNALVSSG-ADAQLCMWSIDKW--E 957 (1058)
Q Consensus 885 ~~l~~s~~~~~~lasg~~d-g~I~iwd~~~~~~~~~l~---~h~~~v~~l~~spd~~~l~s~s-~D~~i~iwd~~~~--~ 957 (1058)
....|.| ++++|++.+-. -.|.+|++..|++...-. .....-..|.|+|++++..... -+++|.+|..+.. +
T Consensus 148 H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 148 HSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred ceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence 8899999 89888876522 279999999886433211 2345678899999999987766 5899999999873 2
Q ss_pred cccceeee-cCCCCCCCCCCeeEEEEcCCCcEEEEE--eCCeEEEEeC--CCCeeeEEeecc-----ccceEEccCCcEE
Q 001534 958 KLKSRFIQ-APAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDS--KLECSRSVSFLS-----LCPYVFGVSSIFL 1027 (1058)
Q Consensus 958 ~~~~~~~~-~~~~~~~~~~~v~~~~fs~d~~~l~~~--~d~~i~vwd~--~~~~~~~~~~~~-----~~~~~~s~~~~~l 1027 (1058)
......+. ++.... ......++..++||++|.++ ....|.+|.+ .+..+..+...+ --.+.|.++|++|
T Consensus 227 ~~~lQ~i~tlP~dF~-g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~L 305 (346)
T COG2706 227 FEELQTIDTLPEDFT-GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFL 305 (346)
T ss_pred EEEeeeeccCccccC-CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEE
Confidence 21111111 222221 22456889999999999997 4457999998 444444443321 3456789999999
Q ss_pred EEEEC-CCeEEEEcCC
Q 001534 1028 LSTLT-KLSVAVHDPL 1042 (1058)
Q Consensus 1028 ~~~~~-d~~v~vw~~~ 1042 (1058)
++++. +.++.+|...
T Consensus 306 iaa~q~sd~i~vf~~d 321 (346)
T COG2706 306 IAANQKSDNITVFERD 321 (346)
T ss_pred EEEccCCCcEEEEEEc
Confidence 98887 5568888643
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-10 Score=130.70 Aligned_cols=224 Identities=13% Similarity=0.095 Sum_probs=138.7
Q ss_pred eecCCCCeeEEEEecCCCeEEEEEeCCC--cEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCC
Q 001534 342 TLNQGSNVMSMDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1058)
Q Consensus 342 ~~~h~~~V~~~~fspdg~~lla~g~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd 419 (1058)
...+...+.+.+|||||+.++.+...++ .|.+||+.+++... +....+.....+||||
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~~g~~~~~~wSPD 272 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSFPGINGAPRFSPD 272 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCCCCCcCCeeECCC
Confidence 3446778999999999996655544443 58888988876432 1112223446899999
Q ss_pred CCEEEEE-eCCCe--EEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCC--cEEEEEcCCCceeEEee
Q 001534 420 GLMLGVA-FSKHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFE 494 (1058)
Q Consensus 420 ~~~l~~~-~~d~~--i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~--~v~vwd~~~~~~~~~l~ 494 (1058)
|+.|+.. +.++. |.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++|+.+++... +.
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt 346 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR-LT 346 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-Ee
Confidence 9988764 55664 777788776532 33445556778999999995 334444444 46666877776443 32
Q ss_pred CCCCCeEEEEecccCCccEEEEEeC-CCe--EEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEE
Q 001534 495 GHEAPVYSVCPHHKESIQFIFSTAI-DGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1058)
Q Consensus 495 ~~~~~v~~~~~~~~~~~~~l~s~s~-d~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1058)
.........+|+|+ |++++..+. ++. |.++|+.++.... +... .......|+|||+.++..... .+...+++
T Consensus 347 ~~g~~~~~~~~SpD--G~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~-~g~~~l~~ 421 (448)
T PRK04792 347 FEGEQNLGGSITPD--GRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTY-QGKQVLAA 421 (448)
T ss_pred cCCCCCcCeeECCC--CCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEec-CCceEEEE
Confidence 22222344677754 466665544 443 5556776655432 2221 122345899999999876642 23456888
Q ss_pred eeCCCCceeEeecCCCCCceeEEEEcC
Q 001534 572 WNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1058)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1058)
++. +|.....+....+ .+...+|+|
T Consensus 422 ~~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 422 VSI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EEC-CCCceEECcCCCC-CcCCCccCC
Confidence 887 4666666655433 566677776
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-10 Score=112.33 Aligned_cols=252 Identities=15% Similarity=0.226 Sum_probs=174.0
Q ss_pred CcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCC--ceeeeeeeecCc------------CCeEEEEEecCCCceEEEEE
Q 001534 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHV------------GGVNDIAFAHPNKQLCIVTC 473 (1058)
Q Consensus 408 ~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~h~------------~~v~~~~fs~d~~~~~l~s~ 473 (1058)
..-|.++.|..+|.+||+|..+|.|.++.-.... .......++.|. ..|..+.|.+++....++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568899999999999999999999999754322 222233444554 36889999998877678888
Q ss_pred cCCCcEEEEEcCCCcee-----------------------------------EEe-eCCCCCeEEEEecccCCccEEEEE
Q 001534 474 GDDKMIKVWDVVAGRKQ-----------------------------------YTF-EGHEAPVYSVCPHHKESIQFIFST 517 (1058)
Q Consensus 474 ~~d~~v~vwd~~~~~~~-----------------------------------~~l-~~~~~~v~~~~~~~~~~~~~l~s~ 517 (1058)
..|++|++|-+...... +.+ .+|...|+++.++ .|+..+++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N--sD~Et~lS- 181 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN--SDKETFLS- 181 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec--CccceEee-
Confidence 88999999987542110 011 2577788888887 44455555
Q ss_pred eCCCeEEEEeCCCCCceEEe---cCC-----CCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeE----eecC
Q 001534 518 AIDGKIKAWLYDYLGSRVDY---DAP-----GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR----TYSG 585 (1058)
Q Consensus 518 s~d~~i~~wd~~~~~~~~~~---~~~-----~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~----~~~~ 585 (1058)
..|-.|.+|+++.....+.+ +.+ ..-|++..|+|....++.-+. ..|.|++-|++...+.- .+..
T Consensus 182 ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS---SKGtIrLcDmR~~aLCd~hsKlfEe 258 (433)
T KOG1354|consen 182 ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS---SKGTIRLCDMRQSALCDAHSKLFEE 258 (433)
T ss_pred ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec---CCCcEEEeechhhhhhcchhhhhcc
Confidence 46889999999876655433 222 125788899997655444332 37889999998533211 1111
Q ss_pred CCC-----------CceeEEEEcCCCCEEEEEeCCCeEEEEEC-CCCceEEEEecCCCC----------C---CcceEEE
Q 001534 586 FRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDM-DNMNMLTTVDADGGL----------P---ASPRLRF 640 (1058)
Q Consensus 586 ~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~----------~---~v~~~~~ 640 (1058)
..+ ..|..+.|+++|+++++-.. -+|++||+ ...+++.+++.|... . .-..++|
T Consensus 259 pedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~ 337 (433)
T KOG1354|consen 259 PEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW 337 (433)
T ss_pred ccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE
Confidence 110 15778999999999988653 57999999 456677776655321 1 1246889
Q ss_pred eCCCCEEEEEECCCcEEEEECCCCce
Q 001534 641 NKEGSLLAVTTSDNGIKILANSDGVR 666 (1058)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~~~~ 666 (1058)
+.++.++++|+..+.+++++...|..
T Consensus 338 sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred cCCcceEecccccceEEEecCCCCcc
Confidence 99999999999999999999776643
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.3e-10 Score=123.70 Aligned_cols=228 Identities=11% Similarity=0.071 Sum_probs=141.2
Q ss_pred ccCCCcCeEEEEECCCCCEEE---EEeCC--CeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcC---
Q 001534 404 LNDAAISVNRCVWGPDGLMLG---VAFSK--HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--- 475 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~---~~~~d--~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~--- 475 (1058)
+......+.+-+|||||+.++ +...+ ..|.+.++.+++..+ +....+.....+|||||++ ++++...
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~-Laf~s~~~g~ 254 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKL-LAFISDRYGN 254 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCE-EEEEECCCCC
Confidence 334555667889999998533 33333 358888888775432 2334445567899999995 3333332
Q ss_pred -CCcEEEEEcCCC---ceeEEeeCCCCCeEEEEecccCCccEEEEEe-CCCeEEEEe--CCC-CCceEEecCCCCcEEEE
Q 001534 476 -DKMIKVWDVVAG---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWL--YDY-LGSRVDYDAPGNWCTMM 547 (1058)
Q Consensus 476 -d~~v~vwd~~~~---~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s-~d~~i~~wd--~~~-~~~~~~~~~~~~~v~~~ 547 (1058)
+..+.+|++..+ +......++.......+|+| ||+.|+..+ .+|...+|. ++. ++....+......+...
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP--DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP--DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence 334455777653 33333323334446678885 456666555 466555554 432 22334444445567789
Q ss_pred EEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEe---CCCeEEEEECCCCceEE
Q 001534 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG---DEFQIKFWDMDNMNMLT 624 (1058)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~ 624 (1058)
.|||||+.|+..+.. ++...|++||+.+++....... .. .+....|+|||+.|+..+ ....|+++|+.+++...
T Consensus 333 ~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~~-~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 333 AWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-PE-NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred eECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-CC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 999999999877642 2356799999998876443322 22 456789999999887644 24578899998877654
Q ss_pred EEecCCCCCCcceEEEeCCC
Q 001534 625 TVDADGGLPASPRLRFNKEG 644 (1058)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~~~ 644 (1058)
..... ..+...+|+|-.
T Consensus 410 Lt~~~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 410 IVIGS---GEKRFPSWGAFP 426 (428)
T ss_pred eecCC---CcccCceecCCC
Confidence 44322 235667888743
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.8e-10 Score=126.13 Aligned_cols=223 Identities=13% Similarity=0.086 Sum_probs=142.5
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCC---CeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCC--c
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--M 478 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~--~ 478 (1058)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||++ ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 34567789999999999999887643 369999998875432 2233444567899999995 333555555 6
Q ss_pred EEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEe-CCC--eEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCE
Q 001534 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1058)
Q Consensus 479 v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s-~d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1058)
|.+||+.+++.. .+..+........|+|+ |+.++..+ .++ .|.++|+.+++... +...........|+|||++
T Consensus 269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~spD--g~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 269 IYVMDLASRQLS-RVTNHPAIDTEPFWGKD--GRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKT 344 (430)
T ss_pred EEEEECCCCCeE-EcccCCCCcCCeEECCC--CCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 888898887643 45555556667788864 45655544 343 47777776655332 2222334456789999999
Q ss_pred EEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCC---CeEEEEECCCCceEEEEecCCCC
Q 001534 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVDADGGL 632 (1058)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~ 632 (1058)
++..... ++...|.+||+.+++........ ......|+|+|+.++..+.+ ..+.++++.. .....+....
T Consensus 345 i~~~~~~-~~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~-- 417 (430)
T PRK00178 345 LVMVHRQ-DGNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ-- 417 (430)
T ss_pred EEEEEcc-CCceEEEEEECCCCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCC--
Confidence 9877642 23446899999887653322221 12245899999998886643 3477777754 3334444322
Q ss_pred CCcceEEEeC
Q 001534 633 PASPRLRFNK 642 (1058)
Q Consensus 633 ~~v~~~~~s~ 642 (1058)
+.+...+|+|
T Consensus 418 g~~~~p~ws~ 427 (430)
T PRK00178 418 GEVREPSWSP 427 (430)
T ss_pred CCcCCCccCC
Confidence 2456667766
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.2e-10 Score=126.11 Aligned_cols=223 Identities=13% Similarity=0.083 Sum_probs=141.1
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCC---CeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCc--
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-- 478 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~-- 478 (1058)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 34467788999999999999887543 358889998875422 2222333457899999996 3445566664
Q ss_pred EEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEe-CCCe--EEEEeCCCCCceEEecCCCCcEEEEEEcCCCCE
Q 001534 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1058)
Q Consensus 479 v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s-~d~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1058)
|.++|+.+++. ..+..+.......+|+|+ |+.++..+ .++. |.++|+.+++.. .+..........+|+|||++
T Consensus 288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpD--G~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 288 IYVVDIATKAL-TRITRHRAIDTEPSWHPD--GKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRS 363 (448)
T ss_pred EEEEECCCCCe-EECccCCCCccceEECCC--CCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCE
Confidence 77789887764 445555556677888864 46665554 3444 666666655433 22223333456789999999
Q ss_pred EEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeC-CC--eEEEEECCCCceEEEEecCCCC
Q 001534 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF--QIKFWDMDNMNMLTTVDADGGL 632 (1058)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~ 632 (1058)
++..+.. .+...|.++|+.+++... +.... ......|+|+|+.++..+. +| .+++++. ++.....+.....
T Consensus 364 l~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g- 437 (448)
T PRK04792 364 MIMVNRT-NGKFNIARQDLETGAMQV-LTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQG- 437 (448)
T ss_pred EEEEEec-CCceEEEEEECCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCC-
Confidence 9876642 233467788988876533 22211 1223579999998887553 33 3777786 4555555554322
Q ss_pred CCcceEEEeC
Q 001534 633 PASPRLRFNK 642 (1058)
Q Consensus 633 ~~v~~~~~s~ 642 (1058)
.+...+|+|
T Consensus 438 -~~~~p~Wsp 446 (448)
T PRK04792 438 -EVKSPAWSP 446 (448)
T ss_pred -CcCCCccCC
Confidence 456777876
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.3e-11 Score=115.21 Aligned_cols=339 Identities=13% Similarity=0.213 Sum_probs=214.0
Q ss_pred ceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEE-CCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcE
Q 001534 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD-MDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1058)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 656 (1058)
..++.++|+.+ .++....-|...-+++.+.|.+++||- .++++.-..+.. ....+++++.+.++...|++|-..|++
T Consensus 15 ~ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 15 ELLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecceE
Confidence 34566777776 677777778888899999999999995 444554444432 223468899999999999999999998
Q ss_pred EEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCC
Q 001534 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1058)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1058)
.-+.+..........
T Consensus 93 tefs~sedfnkm~~~----------------------------------------------------------------- 107 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFL----------------------------------------------------------------- 107 (404)
T ss_pred EEEEhhhhhhhcchh-----------------------------------------------------------------
Confidence 877664331111000
Q ss_pred ccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccc
Q 001534 737 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 816 (1058)
Q Consensus 737 ~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 816 (1058)
+.| ..|...+..+.|+-...++++.+.|..+. |...
T Consensus 108 -----------r~~------------------~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~-------------- 143 (404)
T KOG1409|consen 108 -----------KDY------------------LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCT-------------- 143 (404)
T ss_pred -----------hhh------------------hhhhcceeeEEecCCceeEEEeccccceE-EEee--------------
Confidence 001 12777888888988888899988886543 3221
Q ss_pred cccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEE--CCCceEEEEecCCCCCeEEEEEeCCC
Q 001534 817 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFN--MMTFKVMTMFMSPPPAATFLAFHPQD 893 (1058)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd--~~~~~~~~~~~~~~~~i~~l~~s~~~ 893 (1058)
+++..+....- ....+++.+.-. +...|. .|.|..-. .+...++.++.+|.+.+.+++|.+ .
T Consensus 144 -------e~~~~lg~Y~~-----~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~ 208 (404)
T KOG1409|consen 144 -------ESGNRLGGYNF-----ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-G 208 (404)
T ss_pred -------ccCCcccceEe-----eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-C
Confidence 11111100000 011111111111 333444 45544433 345678889999999999999999 8
Q ss_pred CCEEEEEeCCCeEEEEEccccee-EEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccce----------
Q 001534 894 NNIIAIGMEDSSVQIYNVRVDEV-KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR---------- 962 (1058)
Q Consensus 894 ~~~lasg~~dg~I~iwd~~~~~~-~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~---------- 962 (1058)
.++|.+|..|..|.+||+...+- ...+.+|.+.|..+...+--+.|.+++.||.|.+|+++........
T Consensus 209 ~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c 288 (404)
T KOG1409|consen 209 QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKC 288 (404)
T ss_pred CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhh
Confidence 99999999999999999986543 4578999999999999999999999999999999998753211110
Q ss_pred ---------------eeecCCCCCCCCC-CeeEEEEcCCCcEEEEEeCCeEEEEeC--------CCCeeeEEee--cccc
Q 001534 963 ---------------FIQAPAGRQSPLV-GETKVQFHNDQTHLLVVHESQISVYDS--------KLECSRSVSF--LSLC 1016 (1058)
Q Consensus 963 ---------------~~~~~~~~~~~~~-~v~~~~fs~d~~~l~~~~d~~i~vwd~--------~~~~~~~~~~--~~~~ 1016 (1058)
.+.....|...-+ .|-..+-|.-..+...|..-.+|+-|. +-..+..+.. +.+.
T Consensus 289 ~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgIt 368 (404)
T KOG1409|consen 289 NQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGIT 368 (404)
T ss_pred CchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccccccee
Confidence 0001111110001 111111111122222244445665554 2222333322 4467
Q ss_pred ceEEccCCcEEEEEECCCeEEEEcCC
Q 001534 1017 PYVFGVSSIFLLSTLTKLSVAVHDPL 1042 (1058)
Q Consensus 1017 ~~~~s~~~~~l~~~~~d~~v~vw~~~ 1042 (1058)
...+..+-..|++++.|+-+.+||..
T Consensus 369 amhlqetlglLvTsG~~Rvi~iwd~~ 394 (404)
T KOG1409|consen 369 AMHLQETLGLLVTSGTDRVIKIWDVR 394 (404)
T ss_pred EEEhhhhccceeecCCceEEEEEech
Confidence 77777788889999999999999964
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.6e-10 Score=126.36 Aligned_cols=210 Identities=13% Similarity=0.052 Sum_probs=139.1
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCC---CeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCC--c
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--M 478 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~--~ 478 (1058)
+..+...+.+.+|+|||++|+.++.+ ..|++||+.+++.. .+..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 34566678999999999999987653 47999999887533 23345566778999999985 344555444 5
Q ss_pred EEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeC-CC--eEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCE
Q 001534 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1058)
Q Consensus 479 v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~-d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1058)
|++||+.++.. ..+..+........|++ +|+.|+..+. ++ .|.++|+.+++. ..+.........+.|+|+|++
T Consensus 260 i~~~d~~~~~~-~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 260 IYVMDLDGKQL-TRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEEECCCCCE-EECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCE
Confidence 88899887754 34444555555667875 5567766554 33 577778776543 344444556778899999999
Q ss_pred EEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCC---eEEEEECCCCceEEEEe
Q 001534 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF---QIKFWDMDNMNMLTTVD 627 (1058)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 627 (1058)
++.+..+. +...|.+||+.++.... +.... ......|+|++++|+..+.++ .+++.+.. ++....+.
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGERV-LTDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 99876422 23479999998765432 22221 234568999999988876543 35555543 44444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.4e-09 Score=110.07 Aligned_cols=266 Identities=12% Similarity=0.118 Sum_probs=166.6
Q ss_pred CcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeC----------CCeEEEEEec
Q 001534 369 GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS----------KHIVHLYTYN 438 (1058)
Q Consensus 369 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~----------d~~i~vwd~~ 438 (1058)
+.|.|.|..+++.+.... .+ ..+ ..+ +||||+.|.++.. +..|.+||..
T Consensus 27 ~~v~ViD~~~~~v~g~i~------------------~G-~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTD------------------GG-FLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEEE------------------cc-CCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 899999999987665311 11 111 124 9999998877754 7889999999
Q ss_pred CCCceeeeeeeec----CcCCeEEEEEecCCCceEEEEE--cCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCcc
Q 001534 439 PTGELRQHLEIDA----HVGGVNDIAFAHPNKQLCIVTC--GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQ 512 (1058)
Q Consensus 439 ~~~~~~~~~~~~~----h~~~v~~~~fs~d~~~~~l~s~--~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~ 512 (1058)
+.+.+..+..-.. .......++++|||+. ++.. +.+..|.+.|+.+++.+.++..-. ...-... ++ .
T Consensus 86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~--l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t---~e-~ 158 (352)
T TIGR02658 86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKT--LLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPT---AN-D 158 (352)
T ss_pred cCcEEeEEccCCCchhhccCccceEEECCCCCE--EEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEe---cC-C
Confidence 9887663321000 1223457899999995 4433 348899999999999998876421 1111111 11 1
Q ss_pred EEEEEeCCCeEEEEeCCCCCceEE-----ecCCCCcE-EEEEEcC-CCCEEEEEecCCCCCceEEEeeCCCC-----cee
Q 001534 513 FIFSTAIDGKIKAWLYDYLGSRVD-----YDAPGNWC-TMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEG-----AIK 580 (1058)
Q Consensus 513 ~l~s~s~d~~i~~wd~~~~~~~~~-----~~~~~~~v-~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~-----~~~ 580 (1058)
....-+.||......++..+.... +.....++ ..-.|++ +|++++... .+.|.+.|+... ...
T Consensus 159 ~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~~ 233 (352)
T TIGR02658 159 TFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPAI 233 (352)
T ss_pred ccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceeccee
Confidence 122334556555544444333211 11100000 0113455 888887764 488999996433 222
Q ss_pred EeecCC------CCCceeEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCC
Q 001534 581 RTYSGF------RKRSLGVVQFDTTRNRFLAAG----------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1058)
Q Consensus 581 ~~~~~~------~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1058)
..+... ......-++++++++++++.. ..+.|.++|..+++.+..+.... .+..++++||+
T Consensus 234 ~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dg 310 (352)
T TIGR02658 234 EAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDA 310 (352)
T ss_pred eeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCC
Confidence 222111 111344599999999988843 22579999999999999987642 57899999999
Q ss_pred C-EEEEEE-CCCcEEEEECCCCceeeecc
Q 001534 645 S-LLAVTT-SDNGIKILANSDGVRLLRML 671 (1058)
Q Consensus 645 ~-~l~~~~-~dg~i~iw~~~~~~~~~~~~ 671 (1058)
+ .|++.. .++.|.++|..++ +.++.+
T Consensus 311 kp~lyvtn~~s~~VsViD~~t~-k~i~~i 338 (352)
T TIGR02658 311 KPLLYALSTGDKTLYIFDAETG-KELSSV 338 (352)
T ss_pred CeEEEEeCCCCCcEEEEECcCC-eEEeee
Confidence 9 777666 5788999999988 444443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.9e-10 Score=127.46 Aligned_cols=226 Identities=14% Similarity=0.086 Sum_probs=144.4
Q ss_pred cceecCCccccceeEeecCCCCeeEEEEecCCCeEEEEEeCC--CcEEEEEccCccccccCcceeecccccccccccccc
Q 001534 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1058)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1058)
..+|..|...........+...+.+.+|||||+.++.+...+ ..|.+||+.+++... +
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~ 229 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------V 229 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------e
Confidence 344555543333444445677899999999999655443322 479999998875432 2
Q ss_pred cCCCcCeEEEEECCCCCEEEEE-eCCC--eEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEE-cCCC--c
Q 001534 405 NDAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDK--M 478 (1058)
Q Consensus 405 ~~h~~~v~~~~~spd~~~l~~~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~-~~d~--~ 478 (1058)
..+.+.+.+++|+|||+.|+.. +.++ .|.+||+.++... .+..+........|+|||++ |+.. ..++ .
T Consensus 230 ~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~ 303 (417)
T TIGR02800 230 ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQ 303 (417)
T ss_pred ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCce
Confidence 2345567789999999988754 4443 5888898876432 33345555667899999994 4443 3333 5
Q ss_pred EEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCC---eEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCE
Q 001534 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1058)
Q Consensus 479 v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1058)
|.++|+.+++. ..+..+...+....|+| +|++++.++.++ .|.+||+.++.... +.. ........|+|||++
T Consensus 304 iy~~d~~~~~~-~~l~~~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~p~~spdg~~ 378 (417)
T TIGR02800 304 IYMMDADGGEV-RRLTFRGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD-TGLDESPSFAPNGRM 378 (417)
T ss_pred EEEEECCCCCE-EEeecCCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC-CCCCCCceECCCCCE
Confidence 78888877664 34444556667778885 457888777765 78888888744332 222 223456689999999
Q ss_pred EEEEecCCCCCceEEEeeCCCCceeEeecC
Q 001534 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1058)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1058)
|+.....+ +...+++.+.. +.....+..
T Consensus 379 l~~~~~~~-~~~~l~~~~~~-g~~~~~~~~ 406 (417)
T TIGR02800 379 ILYATTRG-GRGVLGLVSTD-GRFRARLPL 406 (417)
T ss_pred EEEEEeCC-CcEEEEEEECC-CceeeECCC
Confidence 98877532 23456666644 444444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-09 Score=116.06 Aligned_cols=193 Identities=13% Similarity=0.163 Sum_probs=155.1
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEe------c------------CCCceEEEEEcCCCcE
Q 001534 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA------H------------PNKQLCIVTCGDDKMI 479 (1058)
Q Consensus 418 pd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs------~------------d~~~~~l~s~~~d~~v 479 (1058)
|-..++|....||.+++|+...++....+.....-.+..++..|. | .+...+++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 456789999999999999999876544333222334445555552 1 1222378889999999
Q ss_pred EEEEcCCCceeEEee--CCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEE
Q 001534 480 KVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1058)
Q Consensus 480 ~vwd~~~~~~~~~l~--~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1058)
.++++..|+....+. .|.+.|+++.++. +-..|.+++.|+.+..|+.........+......+.+++++|||+.++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 999999999888886 4999999998874 447999999999999999999888889998889999999999999999
Q ss_pred EEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCC-----CCEEEEE-eCCCeEEEEECCC
Q 001534 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT-----RNRFLAA-GDEFQIKFWDMDN 619 (1058)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-~~dg~i~iwd~~~ 619 (1058)
+++ ++|.+||+.+++.+..|.+|.+ +|++++|... |.+++++ ..+..+.+|-...
T Consensus 161 ~as------~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS------RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc------ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 874 4599999999999999999998 8999999776 6777774 4556677886554
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-08 Score=107.68 Aligned_cols=277 Identities=12% Similarity=0.064 Sum_probs=170.1
Q ss_pred cceecCCccccceeEeecCCCCeeEEEEecCCCeEEEEEe---------CCCcEEEEEccCccccccCcceeeccccccc
Q 001534 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT---------NVGDISLWEVGSRERLAHKPFKVWDISAASM 397 (1058)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 397 (1058)
-.++.+|..+.+.+.++.-...-..+ +||||+.+.++.+ .+..|.+||..+++.+.+..+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p--------- 96 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP--------- 96 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC---------
Confidence 34556677778888888855555555 9999997777777 6899999999999877642210
Q ss_pred ccccccccCCCcCeEEEEECCCCCEEEEEe-C-CCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcC
Q 001534 398 PLQNALLNDAAISVNRCVWGPDGLMLGVAF-S-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475 (1058)
Q Consensus 398 ~~~~~~~~~h~~~v~~~~~spd~~~l~~~~-~-d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~ 475 (1058)
.............++++|||++|.+.. . +..|.+.|+.+++.+..... .+...-...+++.. ++ -+.
T Consensus 97 ---~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v----p~~~~vy~t~e~~~---~~-~~~ 165 (352)
T TIGR02658 97 ---EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV----PDCYHIFPTANDTF---FM-HCR 165 (352)
T ss_pred ---CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC----CCCcEEEEecCCcc---EE-Eee
Confidence 000000123345789999999998875 3 78999999999887664322 11111122211111 11 122
Q ss_pred CCcEEEEEcC-CCcee-EE---eeCCCCCeEEE-EecccCCccEEEEEeCCCeEEEEeCCCCCceE-----EecC-----
Q 001534 476 DKMIKVWDVV-AGRKQ-YT---FEGHEAPVYSV-CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-----DYDA----- 539 (1058)
Q Consensus 476 d~~v~vwd~~-~~~~~-~~---l~~~~~~v~~~-~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~-----~~~~----- 539 (1058)
||......+. +|+.. .. +.+...++..= .+.+ .+|.+++.... |+|.+.|+...+... .+..
T Consensus 166 Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~-~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~ 243 (352)
T TIGR02658 166 DGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN-KSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKAD 243 (352)
T ss_pred cCceEEEEecCCCceEEeeeeeecCCccccccCCceEc-CCCcEEEEecC-CeEEEEecCCCcceecceeeecccccccc
Confidence 3333322221 12211 11 11100000000 2222 25566666666 999999965433221 1111
Q ss_pred --CCCcEEEEEEcCCCCEEEEEecC------CCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCC-EEEEEe-CC
Q 001534 540 --PGNWCTMMAYSADGTRLFSCGTS------KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAG-DE 609 (1058)
Q Consensus 540 --~~~~v~~~~~s~~~~~l~~~~~~------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~d 609 (1058)
..+...-++++++++++++.... +++.+.|.++|..+++.+..+.... .+..++++||++ .|++.. .+
T Consensus 244 ~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s 321 (352)
T TIGR02658 244 GWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH--EIDSINVSQDAKPLLYALSTGD 321 (352)
T ss_pred ccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCC
Confidence 12244459999999998874311 1234689999999999999887543 578899999999 877765 67
Q ss_pred CeEEEEECCCCceEEEEec
Q 001534 610 FQIKFWDMDNMNMLTTVDA 628 (1058)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~ 628 (1058)
+.|.++|..+++.+..+..
T Consensus 322 ~~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 322 KTLYIFDAETGKELSSVNQ 340 (352)
T ss_pred CcEEEEECcCCeEEeeecc
Confidence 8899999999999998843
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2659 consensus LisH motif-containing protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=110.18 Aligned_cols=170 Identities=18% Similarity=0.253 Sum_probs=123.1
Q ss_pred cchHHHHHHHHHHhhhcCHHHHHHHHHHHhCCCcc---------HHHHHHHHhcCCHHHHHHHhcCCCccccccchhhHH
Q 001534 3 SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN---------MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIF 73 (1058)
Q Consensus 3 ~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~ 73 (1058)
...+|+.|||+.||-..||.++|+.+.+|+|+..+ -...|.+|..|+-++|+..+.++.+-.-+. ...+.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~-n~~l~ 102 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT-NRELF 102 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc-chhHH
Confidence 35789999999999999999999999999999872 467899999999999999999885432222 23489
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccccchhccCCC--chhHHHHHHHHHHhhc
Q 001534 74 FEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD--TKSARNIMLVELKKLI 151 (1058)
Q Consensus 74 ~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~--~~~~r~~l~~~l~~~~ 151 (1058)
|.+.+|+++||+..+..++|+.|++.++.|+..-+++.++.|...+..--++.....+ .+. ....|.++...+...|
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp-~~~l~~~s~R~kvA~~vN~ai 181 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESP-SAELLSQSLRQKVASEVNSAI 181 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999877777777777655543222211100 001 2333777777666655
Q ss_pred ccCccccccCCCCCCchhHHHHHHHHHHHHH
Q 001534 152 EANPLFRDKLSFPSFKSSRLRTLINQSLNWQ 182 (1058)
Q Consensus 152 ~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q 182 (1058)
-..-- - -...+|..||+.-+.-|
T Consensus 182 L~~~~------~--~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 182 LASQE------H--ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHhc------c--cccchHHHHHHHHHHHH
Confidence 32110 0 11457888885554444
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-09 Score=107.66 Aligned_cols=216 Identities=15% Similarity=0.225 Sum_probs=141.9
Q ss_pred eeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEE-cCCCceeEEee-CCCCCeEEEEecccCCccEEEEEeCCCeEEE
Q 001534 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD-VVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1058)
Q Consensus 448 ~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd-~~~~~~~~~l~-~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~ 525 (1058)
.++||...|++...-|... -+++.+.|.+++||- .+.++.-..+. ....+++++.+... ...|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e--~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE--SRRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeecc--ceEEEEEEecceEEE
Confidence 6778999999988888777 599999999999993 34454333332 13456777777744 478999999999988
Q ss_pred EeCCC----CCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEee-CCCCceeEeecCCCCCceeEEEEcCCC
Q 001534 526 WLYDY----LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN-ESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1058)
Q Consensus 526 wd~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1058)
+.+.. .........|...+..+.|+-..+++++++. |..+ .|- .+.+..+..+.-... -..+.+.-.
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~----dk~~-~~hc~e~~~~lg~Y~~~~~--~t~~~~d~~- 166 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK----DKQF-AWHCTESGNRLGGYNFETP--ASALQFDAL- 166 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc----ccce-EEEeeccCCcccceEeecc--CCCCceeeE-
Confidence 86543 3344456678889999999999999999874 3223 333 222322221111000 011111111
Q ss_pred CEEEEEeCCCeEEEEECC--CCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCcccc
Q 001534 601 NRFLAAGDEFQIKFWDMD--NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678 (1058)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 678 (1058)
+.+.|...|.|.+-.+. .-.++.++..+ ...+.+++|.+....|.+|..|..+.+||+.........+.+|...+
T Consensus 167 -~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV 243 (404)
T KOG1409|consen 167 -YAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKV 243 (404)
T ss_pred -EEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhh
Confidence 44555566666665444 33455555544 45899999999999999999999999999976655555555555443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-09 Score=102.85 Aligned_cols=251 Identities=14% Similarity=0.103 Sum_probs=164.7
Q ss_pred CCCCeeEEEEec---CCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCC---cCeEEEEECC
Q 001534 345 QGSNVMSMDFHP---QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA---ISVNRCVWGP 418 (1058)
Q Consensus 345 h~~~V~~~~fsp---dg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~sp 418 (1058)
....+..+.|+. +|...++-...+|.|.++.....+.... ++ + +..-. ....++.|++
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~---------~-----ls~~ki~~~~~lslD~~~ 131 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR---------G-----LSSKKISVVEALSLDIST 131 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec---------c-----cchhhhhheeeeEEEeec
Confidence 345777888873 4443566667789999998765433221 00 0 11111 1356788999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcC-CCceeEE-eeCC
Q 001534 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYT-FEGH 496 (1058)
Q Consensus 419 d~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~-~~~~~~~-l~~~ 496 (1058)
.+..++++..+|.+.+-+.... .+.....++.|..+.+..+|+....+ ++.+|+.|+.+..||++ .++.+.. .+.|
T Consensus 132 ~~~~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH 209 (339)
T KOG0280|consen 132 SGTKIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVH 209 (339)
T ss_pred cCceEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceee
Confidence 9999999999999985554433 23333367899999999999987776 89999999999999998 4455544 5568
Q ss_pred CCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCC--EEEEEecCCCCCceEEEeeC
Q 001534 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT--RLFSCGTSKEGESHLVEWNE 574 (1058)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~i~~wd~ 574 (1058)
...|.+|.-+|. .+.++++|+.|-.|++||.++......-....+.|..+.++|.-. .+++|-. +-.++-+.
T Consensus 210 ~~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh-----~G~ki~~~ 283 (339)
T KOG0280|consen 210 TSGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMH-----NGAKILDS 283 (339)
T ss_pred ecceEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHh-----cCceEEEe
Confidence 999999987764 558999999999999999998766665555568999999999544 3333321 12455554
Q ss_pred CCC--c---eeEeecCCCCCceeEEEEcCCCCEEEEEe-CCCeEE-EEECCCC
Q 001534 575 SEG--A---IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIK-FWDMDNM 620 (1058)
Q Consensus 575 ~~~--~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~-iwd~~~~ 620 (1058)
..+ + .....+.|.. -.....|......+++++ .|+.++ +|-.-++
T Consensus 284 ~~~~~e~~~~~~s~~~hdS-l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 284 SDKVLEFQIVLPSDKIHDS-LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cccccchheeeeccccccc-eeeccccccccceeeeeeccccceeeeeeeccC
Confidence 433 2 2223333333 222233332234566654 566644 6654443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-08 Score=112.86 Aligned_cols=306 Identities=11% Similarity=0.038 Sum_probs=183.4
Q ss_pred ccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCc
Q 001534 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS 590 (1058)
Q Consensus 511 ~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 590 (1058)
+..+++++.++.+..+|..+++................. ++..+++++ .++.++.+|..+|+.+........ .
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~-~ 137 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGT----EKGEVIALDAEDGKELWRAKLSSE-V 137 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEc----CCCEEEEEECCCCcEeeeeccCce-e
Confidence 368888999999999999998887766655432223332 456666665 377899999999998877654322 1
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCC---cceEEEeCCCCEEEEEECCCcEEEEECCCCcee
Q 001534 591 LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA---SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRL 667 (1058)
Q Consensus 591 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 667 (1058)
...... .+..++.++.+|.++.||.++|+.+........... ....... +..++.+..+|.+..+|..++...
T Consensus 138 ~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 138 LSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred ecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence 111112 245777788899999999999998887755432100 0111121 346778888899999999888432
Q ss_pred eecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccc
Q 001534 668 LRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKI 747 (1058)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 747 (1058)
...-..... +. ...-
T Consensus 214 W~~~~~~~~-----------------------------------------------------------g~------~~~~ 228 (377)
T TIGR03300 214 WEQRVALPK-----------------------------------------------------------GR------TELE 228 (377)
T ss_pred eeeccccCC-----------------------------------------------------------CC------Cchh
Confidence 211000000 00 0000
Q ss_pred cccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCC
Q 001534 748 KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 827 (1058)
Q Consensus 748 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1058)
++.+. ...+ .+ .+..+++++.+|.+..||..++. .+|....
T Consensus 229 ~~~~~------------------~~~p----~~--~~~~vy~~~~~g~l~a~d~~tG~-------------~~W~~~~-- 269 (377)
T TIGR03300 229 RLVDV------------------DGDP----VV--DGGQVYAVSYQGRVAALDLRSGR-------------VLWKRDA-- 269 (377)
T ss_pred hhhcc------------------CCcc----EE--ECCEEEEEEcCCEEEEEECCCCc-------------EEEeecc--
Confidence 00000 0000 01 13456667778888887654321 1232210
Q ss_pred ccccccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEECCCceEEEEecCCC-CCeEEEEEeCCCCCEEEEEeCCCe
Q 001534 828 LMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSS 905 (1058)
Q Consensus 828 ~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~lasg~~dg~ 905 (1058)
.. ....+ .++..+++++ +|.+..+|..+++.+....... ....+.... +..|++++.+|.
T Consensus 270 ------------~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~---g~~l~~~~~~G~ 331 (377)
T TIGR03300 270 ------------SS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV---GGYLVVGDFEGY 331 (377)
T ss_pred ------------CC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE---CCEEEEEeCCCE
Confidence 00 11122 2445565555 8999999999998887653222 222232332 347788999999
Q ss_pred EEEEEcccceeEEEEeCCCCCeEE-EEEcCCCCEEEEEeCCCcEEEE
Q 001534 906 VQIYNVRVDEVKTKLKGHQNRITG-LAFSPTLNALVSSGADAQLCMW 951 (1058)
Q Consensus 906 I~iwd~~~~~~~~~l~~h~~~v~~-l~~spd~~~l~s~s~D~~i~iw 951 (1058)
|+++|..+|+.+..++.+...+.. .++. ++ .|+.++.||.|..+
T Consensus 332 l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 332 LHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 999999999999988866654433 2333 44 57788999988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.7e-09 Score=111.55 Aligned_cols=190 Identities=17% Similarity=0.255 Sum_probs=148.7
Q ss_pred eEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEE--------------------CCC
Q 001534 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW--------------------GPD 419 (1058)
Q Consensus 360 ~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--------------------spd 419 (1058)
.++|..+.||.++||+...++....+. + ...-++..++..| +.|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~-----------p-----~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~ 69 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFA-----------P-----IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLD 69 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeec-----------c-----chhccCcceeEEEEEEeccchHHHHhHHHHhhccCC
Confidence 378888899999999999887654310 0 0111223333333 224
Q ss_pred CCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCC
Q 001534 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1058)
Q Consensus 420 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~ 499 (1058)
...++-|...|.|.+|++..++..... .-..|.+.|+++.++.+-. .|.+++.|+.+..|+..+++.++.+.+....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKL-STDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEE-ecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeeccCCCc
Confidence 457888899999999999998754422 3357999999999998877 8999999999999999999999999999999
Q ss_pred eEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCC-----CCEEEEEecCCCCCceEEEeeC
Q 001534 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-----GTRLFSCGTSKEGESHLVEWNE 574 (1058)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~~~~~~~~i~~wd~ 574 (1058)
+.+++++|+ |..+++++ +.|++||+++.+....+.+|.++|+++.|..+ |.++++... .+..+.+|-.
T Consensus 147 ~~sl~is~D--~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~~w~v 219 (541)
T KOG4547|consen 147 VSSLCISPD--GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGITVWVV 219 (541)
T ss_pred cceEEEcCC--CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---cccceeEEEE
Confidence 999998864 68888886 68999999999999999999999999999877 788887653 3444666654
Q ss_pred C
Q 001534 575 S 575 (1058)
Q Consensus 575 ~ 575 (1058)
.
T Consensus 220 ~ 220 (541)
T KOG4547|consen 220 E 220 (541)
T ss_pred E
Confidence 3
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.1e-08 Score=108.20 Aligned_cols=184 Identities=11% Similarity=0.034 Sum_probs=119.7
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEE
Q 001534 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1058)
Q Consensus 469 ~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1058)
.++.++.++.|..+|..+|+.+.............. -++..++.++.++.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~----v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG----ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE----EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 577888899999999999999887654433222222 2346788889999999999999888776654432222222
Q ss_pred EcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCce-----eEEEEcCCCCEEEEEeCCCeEEEEECCCCceE
Q 001534 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-----GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1058)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1058)
. .+..++.+. .++.++.||.++|+.+..+..... .. ...... +..++.+..+|.+..+|..+|+.+
T Consensus 143 v--~~~~v~v~~----~~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 143 V--ANGLVVVRT----NDGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred E--ECCEEEEEC----CCCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence 2 234555554 378899999999998887665432 11 111121 246778888899999999999877
Q ss_pred EEEecCCCC--CC---cceEEEeC--CCCEEEEEECCCcEEEEECCCCc
Q 001534 624 TTVDADGGL--PA---SPRLRFNK--EGSLLAVTTSDNGIKILANSDGV 665 (1058)
Q Consensus 624 ~~~~~~~~~--~~---v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~ 665 (1058)
......... .. ...+.-+| .+..+++++.+|.++.||..+++
T Consensus 214 W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~ 262 (377)
T TIGR03300 214 WEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR 262 (377)
T ss_pred eeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc
Confidence 654321110 00 00011111 35678888889999999998873
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-08 Score=99.04 Aligned_cols=272 Identities=13% Similarity=0.081 Sum_probs=173.6
Q ss_pred CCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC---CCC-EEEEEeCCCeEEEEEecCCCce
Q 001534 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP---DGL-MLGVAFSKHIVHLYTYNPTGEL 443 (1058)
Q Consensus 368 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp---d~~-~l~~~~~d~~i~vwd~~~~~~~ 443 (1058)
.|.+.+|++...+......+ .....+.+..+.|+. +|. .++-+..+|.|.++........
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~----------------q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss 108 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTL----------------QCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS 108 (339)
T ss_pred ccceEEEeecccccCcccee----------------eeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee
Confidence 35778888877655432111 122445677888865 555 5677788999999987765433
Q ss_pred eeeeeeecCcC---CeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCcee--EEeeCCCCCeEEEEecccCCccEEEEEe
Q 001534 444 RQHLEIDAHVG---GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ--YTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (1058)
Q Consensus 444 ~~~~~~~~h~~---~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~--~~l~~~~~~v~~~~~~~~~~~~~l~s~s 518 (1058)
.....+..-.- ...++.|++.+. -++++-.+|.+.+-+....... +.++.|+-..+...|+...+ +++++|+
T Consensus 109 ~~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p-nlvytGg 185 (339)
T KOG0280|consen 109 VHLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP-NLVYTGG 185 (339)
T ss_pred eeecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCC-ceEEecC
Confidence 32222222111 245788999888 5788888999986665555443 47889999999999986655 8999999
Q ss_pred CCCeEEEEeCCCCCc-eEE-ecCCCCcEEEEEEcC-CCCEEEEEecCCCCCceEEEeeCC-CCceeEeecCCCCCceeEE
Q 001534 519 IDGKIKAWLYDYLGS-RVD-YDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVV 594 (1058)
Q Consensus 519 ~d~~i~~wd~~~~~~-~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~ 594 (1058)
.|+.+..||++.++. +.. ...|...|.++.-+| .+.++++|+. |..|++||.+ .++++..-.. ++.|..+
T Consensus 186 DD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY----De~i~~~DtRnm~kPl~~~~v--~GGVWRi 259 (339)
T KOG0280|consen 186 DDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY----DECIRVLDTRNMGKPLFKAKV--GGGVWRI 259 (339)
T ss_pred CCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecc----ccceeeeehhcccCccccCcc--ccceEEE
Confidence 999999999995443 222 445777888888876 5778888886 6679999998 4666554333 3478999
Q ss_pred EEcCCCC-EEEEEeCCCeEEEEECCCCceE--EEEec-CCCCCCcceEEEeCCCCEEEEEEC-CCcEE-EEECCCC
Q 001534 595 QFDTTRN-RFLAAGDEFQIKFWDMDNMNML--TTVDA-DGGLPASPRLRFNKEGSLLAVTTS-DNGIK-ILANSDG 664 (1058)
Q Consensus 595 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~--~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~-iw~~~~~ 664 (1058)
..+|.-. .++.+..-+-.+|-+...+... ..+.. ..+.+-+..-.|......||+++. |..++ +|-..++
T Consensus 260 ~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 260 KHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 9988643 2333444444667666544322 11111 122223344445443456787653 66645 6655444
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.1e-10 Score=119.03 Aligned_cols=283 Identities=15% Similarity=0.202 Sum_probs=192.7
Q ss_pred CCcceeeecCCCCCcceecCC-------ccccceeEeecCC--CCeeEEEEecCCC-eEEEEEeCCCcEEEEEccCcccc
Q 001534 313 GQSDEVSFAGVAHTPNVYSQD-------DLTKTVVRTLNQG--SNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERL 382 (1058)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~h~--~~V~~~~fspdg~-~lla~g~~dg~v~iwd~~~~~~~ 382 (1058)
++++.+...|.|+.+++.+.- +.+...-+-+.|- -.|-.+.|||... .+-++......-.||++......
T Consensus 25 ~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~ 104 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSN 104 (1081)
T ss_pred CcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCcc
Confidence 466778888888887776533 2466676777764 4578889997542 13344455667778888654322
Q ss_pred ccCcceeecccccccccccccccCCCcCeEEEEECCC-CCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEE
Q 001534 383 AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF 461 (1058)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~f 461 (1058)
. ...++.+|+..|+.+-|.|. ...+|+++.|..+..||+.+..... ..+..-...-..++|
T Consensus 105 a----------------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~--ys~~~w~s~asqVkw 166 (1081)
T KOG0309|consen 105 A----------------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF--YSTSSWRSAASQVKW 166 (1081)
T ss_pred c----------------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce--eeeecccccCceeee
Confidence 2 22347899999999999995 4588999999999999998865322 233334445678999
Q ss_pred ecCCCceEEEEEcCCCcEEEEEcCCC-ceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEE-ecC
Q 001534 462 AHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDA 539 (1058)
Q Consensus 462 s~d~~~~~l~s~~~d~~v~vwd~~~~-~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~-~~~ 539 (1058)
+.... .+.+.+..+.|.+||.+.| .++..+++|...|+.+.|..... ..+.+.+.||+|+.||.+....... ...
T Consensus 167 nyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vt 243 (1081)
T KOG0309|consen 167 NYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVT 243 (1081)
T ss_pred cccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceecc
Confidence 98776 4566677889999999875 56789999999999998875433 4688999999999999986544332 223
Q ss_pred CCCcEEEEEEcCCCCEEEEEecCCCCCceEEEe---------eCCC-CceeEeecCCCCCceeEEEEcCC----------
Q 001534 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW---------NESE-GAIKRTYSGFRKRSLGVVQFDTT---------- 599 (1058)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w---------d~~~-~~~~~~~~~~~~~~v~~~~~~~~---------- 599 (1058)
...++..-.+.|-|+-...--. .++..+.++ +..+ .+++..|.||.+ .|...-|-..
T Consensus 244 t~~piw~~r~~Pfg~g~~~mp~--~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~r 320 (1081)
T KOG0309|consen 244 TNFPIWRGRYLPFGEGYCIMPM--VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSR 320 (1081)
T ss_pred ccCcceeccccccCceeEeccc--cCCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCcc
Confidence 3446666667775544332221 112233333 3332 357889999987 4544333221
Q ss_pred CCEEEEEeCCCeEEEEECCC
Q 001534 600 RNRFLAAGDEFQIKFWDMDN 619 (1058)
Q Consensus 600 ~~~l~~~~~dg~i~iwd~~~ 619 (1058)
.-.|++-+.|.++++|-+.+
T Consensus 321 dfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 321 DFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ceeEEEeecCCceEeeeccH
Confidence 23689999999999998764
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.2e-10 Score=115.14 Aligned_cols=245 Identities=14% Similarity=0.196 Sum_probs=172.1
Q ss_pred cccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCC-ce---eeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCc
Q 001534 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-EL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1058)
Q Consensus 403 ~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~-~~---~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~ 478 (1058)
.+.||...|..++--.+.+-+++++.|++|++|.++... .+ ....+++.|+.+|.++.|..+.+ +++++ ||.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 378999999999888888899999999999999987532 12 23447789999999999999887 56554 899
Q ss_pred EEEEEcCCCceeEEeeC--CCCCeEEEEecccCCccEEEEE-eCCCeEEEEeCCCCCceEEec-----CCCCcEEEEEEc
Q 001534 479 IKVWDVVAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDYD-----APGNWCTMMAYS 550 (1058)
Q Consensus 479 v~vwd~~~~~~~~~l~~--~~~~v~~~~~~~~~~~~~l~s~-s~d~~i~~wd~~~~~~~~~~~-----~~~~~v~~~~~s 550 (1058)
|.+||.--|+++..+.. ..+.+..+..-++-+..+++.+ +...+|+++|.+..+-...+. ++...+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 99999988887764321 1222222322233344555555 778999999999877665443 344578899999
Q ss_pred CCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEE-EECCCCceEEEEecC
Q 001534 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF-WDMDNMNMLTTVDAD 629 (1058)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~ 629 (1058)
+.|++++++-. +|.|.+.|.++|+.+..++.-.- ....++ .|..+.++....|.++.+ |....+....+.+.+
T Consensus 886 ~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpp 959 (1034)
T KOG4190|consen 886 DKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPP 959 (1034)
T ss_pred cCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCC
Confidence 99999998764 78899999999998877664432 222232 355567777778889988 988777665555433
Q ss_pred CCCCCcceEEEeCCCCEEEEEECCCcEEEEEC
Q 001534 630 GGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1058)
Q Consensus 630 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 661 (1058)
..... -...-|..++++...+.+.+|.-
T Consensus 960 pepah----flqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 960 PEPAH----FLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred Ccchh----hhhccCceeEEeccCcEEEEEec
Confidence 22100 01112556777777777777753
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-07 Score=113.68 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=59.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEE-------------eCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 001534 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-------------KGHQNRITGLAFSPTLNALVSSGADAQLCM 950 (1058)
Q Consensus 884 i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l-------------~~h~~~v~~l~~spd~~~l~s~s~D~~i~i 950 (1058)
...+++++ +|.++++-+.+++|++||..++...... .++-.....|+++++|+.+++-+.++.|++
T Consensus 806 P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 806 PLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred CceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 46899999 8888888889999999999887654322 112235778999999999998899999999
Q ss_pred EeCCCCcc
Q 001534 951 WSIDKWEK 958 (1058)
Q Consensus 951 wd~~~~~~ 958 (1058)
||+.+++.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99998764
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.9e-08 Score=107.01 Aligned_cols=197 Identities=12% Similarity=0.024 Sum_probs=124.0
Q ss_pred CCeeEEEEecCCCeEEEEEe-C--CCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEE
Q 001534 347 SNVMSMDFHPQQQTILLVGT-N--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1058)
Q Consensus 347 ~~V~~~~fspdg~~lla~g~-~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l 423 (1058)
+......|||||+.+++..+ . +..|.++|+.+++... +....+.+...+|||||+.|
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence 37889999999986444333 2 3579999998876543 22344556678899999987
Q ss_pred EEEe-C--CCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCC--cEEEEEcCCCceeEEeeCCCC
Q 001534 424 GVAF-S--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEA 498 (1058)
Q Consensus 424 ~~~~-~--d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~--~v~vwd~~~~~~~~~l~~~~~ 498 (1058)
+... . +..|.++|+.++.. . .+..+........|+|||+++++. ....+ .|.+.|+.+|+..+.... ..
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~-Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~ 321 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFV-SDRLGYPNIFMKKLNSGSVEQVVFH-GK 321 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEE-ECCCCCceEEEEECCCCCeEeCccC-CC
Confidence 7543 2 35688888877653 2 233344334456899999974333 33333 688889888776443321 11
Q ss_pred CeEEEEecccCCccEEEEEeCC---------CeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceE
Q 001534 499 PVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1058)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~d---------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1058)
. ...|+| +|+.++..+.. ..|.+.|++++... .+... .......|+|||+.++..... .+...+
T Consensus 322 ~--~~~~SP--DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~-~~~~~L 394 (419)
T PRK04043 322 N--NSSVST--YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYL-GNQSAL 394 (419)
T ss_pred c--CceECC--CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEcc-CCcEEE
Confidence 1 236775 45666655543 36777888776543 33322 233468899999998877643 235567
Q ss_pred EEeeCCC
Q 001534 570 VEWNESE 576 (1058)
Q Consensus 570 ~~wd~~~ 576 (1058)
.+.++..
T Consensus 395 ~~~~l~g 401 (419)
T PRK04043 395 GIIRLNY 401 (419)
T ss_pred EEEecCC
Confidence 7888753
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.2e-09 Score=124.58 Aligned_cols=201 Identities=14% Similarity=0.236 Sum_probs=162.7
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEE
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd 483 (1058)
.+.|-..|.++.=+|...+.++|+.||.|++|....++.+....+. |. ..|+.+.|+.+|+ .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 3445567888888999999999999999999999988877655443 33 8899999999999 577888899999999
Q ss_pred cCCCceeEEeeCCCCCeEEEEecccCCccEEEEEe---CCCeEEEEeCCCCCc-eEEecCCCCcEEEEEEcCCCCEEEEE
Q 001534 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSC 559 (1058)
Q Consensus 484 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s---~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1058)
+. .++....+.|......+.|-. ..+++++ .++.+.+||.-.... -..-..|.+.++++++.|....+++|
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence 65 777778888998888888864 3566654 468899999654333 23347889999999999999999999
Q ss_pred ecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEec
Q 001534 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1058)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1058)
+. +|.|++||++..++.+.++. +. ...++++|+..|.++||++.....+..++.
T Consensus 2355 gr----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2355 GR----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CC----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 84 88899999998887776664 33 467899999999999999998877777654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.8e-07 Score=109.48 Aligned_cols=246 Identities=14% Similarity=0.114 Sum_probs=161.3
Q ss_pred EEEEECCC-CCEEEEEeCCCeEEEEEecCCCceeeeeee-----------ecCcCCeEEEEEecCCCceEEEEEcCCCcE
Q 001534 412 NRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEI-----------DAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1058)
Q Consensus 412 ~~~~~spd-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-----------~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v 479 (1058)
..++++++ +..+++-+.++.|++||..+. .+...... .++-.....+++.++++. ++++-...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~-LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNL-LYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCE-EEEEeCCCceE
Confidence 46889875 556666677889999998653 22211100 001123578999998873 33444456789
Q ss_pred EEEEcCCCceeEEeeCC-----------------CCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCC--
Q 001534 480 KVWDVVAGRKQYTFEGH-----------------EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-- 540 (1058)
Q Consensus 480 ~vwd~~~~~~~~~l~~~-----------------~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~-- 540 (1058)
+++|..++. +.++.+. -.....+++++. ++.++++.+.++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~ 725 (1057)
T PLN02919 649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGY 725 (1057)
T ss_pred EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEECCCCeEEEEECCCCeEEE-EecCCc
Confidence 999987764 4333221 113457888863 44677888889999999987654321 1110
Q ss_pred -------------CCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCC------------C--------
Q 001534 541 -------------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF------------R-------- 587 (1058)
Q Consensus 541 -------------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~------------~-------- 587 (1058)
-.....++++|+++.|+++.. .++.|++||+.++.......+. .
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs---~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~ 802 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS---ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL 802 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence 123457999999997776653 4678999999876532111000 0
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecC-----------CCCCCcceEEEeCCCCEEEEEECCCcE
Q 001534 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----------GGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1058)
Q Consensus 588 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~~~~~dg~i 656 (1058)
-.....++++++|+.+++-+.++.|++||..++......... ........++++++|+.+++-+.++.|
T Consensus 803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 002357889999998888889999999999887665433210 011245689999999988888889999
Q ss_pred EEEECCCCc
Q 001534 657 KILANSDGV 665 (1058)
Q Consensus 657 ~iw~~~~~~ 665 (1058)
++||+.++.
T Consensus 883 rvid~~~~~ 891 (1057)
T PLN02919 883 RYLDLNKGE 891 (1057)
T ss_pred EEEECCCCc
Confidence 999998873
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-06 Score=97.11 Aligned_cols=217 Identities=12% Similarity=0.096 Sum_probs=132.9
Q ss_pred CeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcC--CCcEEEEEcCCCceeEEeeCCCCCeEEEEecc
Q 001534 430 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1058)
Q Consensus 430 ~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~--d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~ 507 (1058)
..|.+-|.+... .+ .+... +......|+|||+++++++... +..|.++|+.+|+..... ...+......|+|
T Consensus 169 ~~l~~~d~dg~~-~~---~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SP 242 (419)
T PRK04043 169 SNIVLADYTLTY-QK---VIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSK 242 (419)
T ss_pred ceEEEECCCCCc-ee---EEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECC
Confidence 355565655443 22 22222 3778899999998522322222 457999999888754433 3455566677886
Q ss_pred cCCccEEEEEeCC--CeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecC
Q 001534 508 KESIQFIFSTAID--GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1058)
Q Consensus 508 ~~~~~~l~s~s~d--~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1058)
++. .++++.+.+ ..|.++|+..+.. ..+...........|+|||+.|+..+. ..+...|+++|+.+++..+....
T Consensus 243 DG~-~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~~Iy~~dl~~g~~~rlt~~ 319 (419)
T PRK04043 243 DGS-KLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSD-RLGYPNIFMKKLNSGSVEQVVFH 319 (419)
T ss_pred CCC-EEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEEC-CCCCceEEEEECCCCCeEeCccC
Confidence 542 344444444 4577778776553 333333333446689999999887763 23455799999988776443322
Q ss_pred CCCCceeEEEEcCCCCEEEEEeCC---------CeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCC--
Q 001534 586 FRKRSLGVVQFDTTRNRFLAAGDE---------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN-- 654 (1058)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-- 654 (1058)
.. . ...|+|+|++++..+.. ..|.+.|+.+++.. .+.... ......|+|||+.++..+.++
T Consensus 320 g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~---~~~~p~~SPDG~~I~f~~~~~~~ 391 (419)
T PRK04043 320 GK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANG---VNQFPRFSSDGGSIMFIKYLGNQ 391 (419)
T ss_pred CC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCC---CcCCeEECCCCCEEEEEEccCCc
Confidence 11 1 24899999998876533 36888898887643 333322 223588999999887776532
Q ss_pred -cEEEEECCC
Q 001534 655 -GIKILANSD 663 (1058)
Q Consensus 655 -~i~iw~~~~ 663 (1058)
.+.+.++..
T Consensus 392 ~~L~~~~l~g 401 (419)
T PRK04043 392 SALGIIRLNY 401 (419)
T ss_pred EEEEEEecCC
Confidence 344555543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.91 E-value=8e-07 Score=90.02 Aligned_cols=187 Identities=15% Similarity=0.166 Sum_probs=131.2
Q ss_pred EEEEccCCcEEEEEe------CCeEEEEECC-CceEEEEecCCCCCeEEEEEeCCCCCEEEEEe----------------
Q 001534 845 CIALSKNDSYVMSAS------GGKVSLFNMM-TFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM---------------- 901 (1058)
Q Consensus 845 ~~~~s~d~~~la~~s------dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~---------------- 901 (1058)
.-+||+||++|.+.- .|.|-|||.. +.+.+.++..|.-....+.+.| ||+.|+++-
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 478999999999884 3679999999 7788888988877778888999 887776652
Q ss_pred --CCCeEEEEEcccceeEEE--E--eCCCCCeEEEEEcCCCCEEEEEeCCC-------cEEEEeCCCCccccceeeecCC
Q 001534 902 --EDSSVQIYNVRVDEVKTK--L--KGHQNRITGLAFSPTLNALVSSGADA-------QLCMWSIDKWEKLKSRFIQAPA 968 (1058)
Q Consensus 902 --~dg~I~iwd~~~~~~~~~--l--~~h~~~v~~l~~spd~~~l~s~s~D~-------~i~iwd~~~~~~~~~~~~~~~~ 968 (1058)
.+.++...|..+|+++.. + .-|...|..|++.++|..++..=..| .|.+++... .... +....
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~--~~~p~ 209 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRL--LPAPE 209 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--ccee--ccCCh
Confidence 223466667788887776 5 34888999999999997666543322 244444333 1111 11111
Q ss_pred CC-CCCCCCeeEEEEcCCCcEEEEE--eCCeEEEEeC-CCCeeeEEeeccccceEEccCCcEEEEEECCCeEEE
Q 001534 969 GR-QSPLVGETKVQFHNDQTHLLVV--HESQISVYDS-KLECSRSVSFLSLCPYVFGVSSIFLLSTLTKLSVAV 1038 (1058)
Q Consensus 969 ~~-~~~~~~v~~~~fs~d~~~l~~~--~d~~i~vwd~-~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~v 1038 (1058)
.. ..-..-+-+|++++++.+++++ ..+.+.+||. +++.+........+-++-..++ ++++++ .+.+..
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ssG-~G~~~~ 281 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSSG-QGQLIR 281 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeCC-CccEEE
Confidence 00 0011347899999999988774 7889999999 8998888888888888877777 666644 444433
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.4e-09 Score=123.12 Aligned_cols=224 Identities=13% Similarity=0.160 Sum_probs=168.3
Q ss_pred CCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeC-CCC
Q 001534 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG-HEA 498 (1058)
Q Consensus 420 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~-~~~ 498 (1058)
++....+..++...-|..+.+.. .+..+-..|.++.=+|... +.+||+.||.|++|....++.+..++. ...
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~-----~~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s 2252 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV-----MIKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNS 2252 (2439)
T ss_pred cccCCcccCCccccceeccccee-----EeecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcc
Confidence 34444444555555565554332 2334556788888888877 789999999999999999998877753 347
Q ss_pred CeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCC-
Q 001534 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG- 577 (1058)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~- 577 (1058)
.|+.+.|+ ..|+.+..+..||.+.+|... .+.......|......+.|-. ..+++.+.+.+ ++.+.+||..-.
T Consensus 2253 ~vtr~~f~--~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2253 RVTRSRFN--HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPP 2326 (2439)
T ss_pred hhhhhhhc--ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCc
Confidence 88888888 456889999999999999877 455566777777777777765 66777766554 677999996432
Q ss_pred --ceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCc
Q 001534 578 --AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1058)
Q Consensus 578 --~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1058)
.++. ..|.+ .++++++.|..+.|++||.+|.|++||++..++.+.++. +. ...++++|+..|.
T Consensus 2327 ~~s~v~--~~H~~-gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2327 MNSLVH--TCHDG-GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred ccceee--eecCC-CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccc
Confidence 2333 66666 799999999999999999999999999998887776653 23 4668999999999
Q ss_pred EEEEECCCCceeeeccc
Q 001534 656 IKILANSDGVRLLRMLE 672 (1058)
Q Consensus 656 i~iw~~~~~~~~~~~~~ 672 (1058)
++||++..- .++..+.
T Consensus 2392 ikIw~~s~~-~ll~~~p 2407 (2439)
T KOG1064|consen 2392 IKIWRLSEF-GLLHTFP 2407 (2439)
T ss_pred eEEEEcccc-chhhcCc
Confidence 999999766 5555544
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-09 Score=119.93 Aligned_cols=217 Identities=13% Similarity=0.208 Sum_probs=161.7
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCC-cEEEE
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-MIKVW 482 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~-~v~vw 482 (1058)
+..|....+|++|+-+.+.|++|+..|.|+++++.+|.... ....|.++|+.+.=+.||.. .|.+++... -..+|
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHHh
Confidence 67899999999999999999999999999999999998766 66789999999999999994 333333333 57799
Q ss_pred EcCC-CceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEe-cC---CCCcEEEEEEcCCCCEEE
Q 001534 483 DVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DA---PGNWCTMMAYSADGTRLF 557 (1058)
Q Consensus 483 d~~~-~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~-~~---~~~~v~~~~~s~~~~~l~ 557 (1058)
++.+ +...++|.+ -.++.|+... ..-+.|.......+||+.+.....++ .. ....-+...|+|+.+.++
T Consensus 1173 ~~~s~~~~~Hsf~e----d~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDE----DKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ccccccCccccccc----cceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 9864 555666653 3456676432 44455555577889999998776652 21 122336788999998887
Q ss_pred EEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcce
Q 001534 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1058)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1058)
-- | .+||.+..+.++.|..... . ..-.|+|.|..++..++ |||+++.+.+...+.-.. ..
T Consensus 1247 nd-------G--vLWDvR~~~aIh~FD~ft~-~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq----c~ 1306 (1516)
T KOG1832|consen 1247 ND-------G--VLWDVRIPEAIHRFDQFTD-Y-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ----CA 1306 (1516)
T ss_pred eC-------c--eeeeeccHHHHhhhhhhee-c-ccccccCCCceEEeech-----hhhhHHHHHHhcCccccc----eE
Confidence 53 3 4799998888887776543 2 23459999999998775 999999998887765433 56
Q ss_pred EEEeCCCCEEEEE
Q 001534 638 LRFNKEGSLLAVT 650 (1058)
Q Consensus 638 ~~~s~~~~~l~~~ 650 (1058)
+.|+..|..++..
T Consensus 1307 VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1307 VTFNSTGDVMYAM 1319 (1516)
T ss_pred EEeccCccchhhh
Confidence 8898888776543
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.9e-08 Score=94.20 Aligned_cols=248 Identities=15% Similarity=0.241 Sum_probs=166.2
Q ss_pred CCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCC--ceeeeeeeecCc------------CCeEEEEEecCCCceEEEE
Q 001534 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHV------------GGVNDIAFAHPNKQLCIVT 472 (1058)
Q Consensus 407 h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~h~------------~~v~~~~fs~d~~~~~l~s 472 (1058)
....|+++.|...|.+|++|...|.|.+|.-.... ......++++|. ..|..+.|..++.+..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999765432 122233456664 3578899988776667778
Q ss_pred EcCCCcEEEEEcCCCc-------------------ee-----------------------EEe-eCCCCCeEEEEecccC
Q 001534 473 CGDDKMIKVWDVVAGR-------------------KQ-----------------------YTF-EGHEAPVYSVCPHHKE 509 (1058)
Q Consensus 473 ~~~d~~v~vwd~~~~~-------------------~~-----------------------~~l-~~~~~~v~~~~~~~~~ 509 (1058)
.+.|++|++|-+.... ++ +.. ..|...++++.++.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-- 182 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-- 182 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC--
Confidence 8889999999875431 00 001 24666677777764
Q ss_pred CccEEEEEeCCCeEEEEeCCCCCceEEe---cCCC-----CcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCcee-
Q 001534 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPG-----NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK- 580 (1058)
Q Consensus 510 ~~~~l~s~s~d~~i~~wd~~~~~~~~~~---~~~~-----~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~- 580 (1058)
|...+ ..+.|-.|.+|+++.....+.+ ..+. .-|++..|+|....++.-+. ..|.|++-|++...+.
T Consensus 183 D~et~-lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs---SkG~Ikl~DlRq~alcd 258 (460)
T COG5170 183 DKETL-LSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS---SKGEIKLNDLRQSALCD 258 (460)
T ss_pred chhee-eeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec---CCCcEEehhhhhhhhcc
Confidence 32344 4556889999998876554432 3222 25788899997655443332 3778999999843211
Q ss_pred ---Ee------------ecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEecCCC----------CCC
Q 001534 581 ---RT------------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGG----------LPA 634 (1058)
Q Consensus 581 ---~~------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~----------~~~ 634 (1058)
.. +.+... .|..+.|+++|+++++-+. -+|++||... ..++.+++.|.. ...
T Consensus 259 n~~klfe~~~D~v~~~ff~eivs-SISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDa 336 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVS-SISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDA 336 (460)
T ss_pred CchhhhhhccCcccchhHHHHhh-hhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccc
Confidence 01 111111 5778999999998887654 5799999875 456666654421 011
Q ss_pred c---ceEEEeCCCCEEEEEECCCcEEEEECC
Q 001534 635 S---PRLRFNKEGSLLAVTTSDNGIKILANS 662 (1058)
Q Consensus 635 v---~~~~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1058)
| ..+.|+.|.+.+.+|+..+..-++-..
T Consensus 337 ifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 337 IFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeeEEEEecCCcccccccccccceeeeccc
Confidence 2 357899999999999998888888643
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.86 E-value=0.00052 Score=78.53 Aligned_cols=594 Identities=11% Similarity=0.113 Sum_probs=283.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCC----C
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----G 420 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd----~ 420 (1058)
...-..|+..-++| +|.+|+.-|.=.+-.+.+-....++... ++. + ..-++|..+..-.+ +
T Consensus 305 e~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy~~i----------let--~-~NLgPI~Dm~Vvd~d~q~q 369 (1096)
T KOG1897|consen 305 ETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSYVVI----------LET--F-VNLGPIVDMCVVDLDRQGQ 369 (1096)
T ss_pred CcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCchhhh----------hhh--c-ccccceeeEEEEeccccCC
Confidence 34445667777777 6788988777777777654433211110 000 1 13357777776442 2
Q ss_pred CEEEEEe---CCCeEEEEEecCCCceeeeeeeecCcCCeEEEE--EecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeC
Q 001534 421 LMLGVAF---SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIA--FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1058)
Q Consensus 421 ~~l~~~~---~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~--fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~ 495 (1058)
..+++++ .||++++..-.-+-.......+.| -..++.+. +.+.-.. +++.+-.+ .-++..+...-......+
T Consensus 370 ~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~-eTrvl~i~~e~ee~~~~g 446 (1096)
T KOG1897|consen 370 GQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFIS-ETRVLNISEEVEETEDPG 446 (1096)
T ss_pred ceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEecc-ceEEEEEccceEEecccc
Confidence 3566653 589999876433211121224445 44567777 4443333 34433322 334444332211112222
Q ss_pred CCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCC
Q 001534 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1058)
Q Consensus 496 ~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1058)
.......+..+.-. ++.|+-. ....||+++-. +....+..... ++....+.+...++.++. ++.+...++.
T Consensus 447 f~~~~~Tif~S~i~-g~~lvQv-Ts~~iRl~ss~--~~~~~W~~p~~-~ti~~~~~n~sqVvvA~~----~~~l~y~~i~ 517 (1096)
T KOG1897|consen 447 FSTDEQTIFCSTIN-GNQLVQV-TSNSIRLVSSA--GLRSEWRPPGK-ITIGVVSANASQVVVAGG----GLALFYLEIE 517 (1096)
T ss_pred ccccCceEEEEccC-CceEEEE-ecccEEEEcch--hhhhcccCCCc-eEEEEEeecceEEEEecC----ccEEEEEEee
Confidence 22233333322211 1222211 12345666433 23333333333 333333344445555442 4556666666
Q ss_pred CCceeEeecCCCCCceeEEEEcCCC------CEEEEEeCCCeE-EEEECCCCceEEEEecCC--CCCCcceEEEeCCCCE
Q 001534 576 EGAIKRTYSGFRKRSLGVVQFDTTR------NRFLAAGDEFQI-KFWDMDNMNMLTTVDADG--GLPASPRLRFNKEGSL 646 (1058)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~dg~i-~iwd~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~ 646 (1058)
.+.............+.|+.++|-| ++++.|..+..+ .+.-..+...+....... -...|.-..+-.|..+
T Consensus 518 ~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~y 597 (1096)
T KOG1897|consen 518 DGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHY 597 (1096)
T ss_pred ccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceE
Confidence 5553323222233368899998752 256666654443 333344444433332221 1123444556667889
Q ss_pred EEEEECCCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCC--------CCCCCCC
Q 001534 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLE--------RPDRGPP 718 (1058)
Q Consensus 647 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 718 (1058)
|.++..||.+.-|.+....-.....+...-. . .+..++.+.+.... .+++.+.. ....-.|
T Consensus 598 LlvalgdG~l~~fv~d~~tg~lsd~Kk~~lG-----t-----~P~~Lr~f~sk~~t-~vfa~sdrP~viY~~n~kLv~sp 666 (1096)
T KOG1897|consen 598 LLVALGDGALLYFVLDINTGQLSDRKKVTLG-----T-----QPISLRTFSSKSRT-AVFALSDRPTVIYSSNGKLVYSP 666 (1096)
T ss_pred EEEEcCCceEEEEEEEcccceEccccccccC-----C-----CCcEEEEEeeCCce-EEEEeCCCCEEEEecCCcEEEec
Confidence 9999999998876554331111111100000 0 00112211111110 01111100 0000000
Q ss_pred C--ccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceE
Q 001534 719 A--VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVH 796 (1058)
Q Consensus 719 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 796 (1058)
+ ..............+ ..++....+.+++..++....-. .+. .| -......+++.+....+.+.+.-...
T Consensus 667 ls~kev~~~c~f~s~a~~--d~l~~~~~~~l~i~tid~iqkl~-irt--vp---l~~~prrI~~q~~sl~~~v~s~r~e~ 738 (1096)
T KOG1897|consen 667 LSLKEVNHMCPFNSDAYP--DSLASANGGALTIGTIDEIQKLH-IRT--VP---LGESPRRICYQESSLTFGVLSNRIES 738 (1096)
T ss_pred cchHHhhhhcccccccCC--ceEEEecCCceEEEEecchhhcc-eee--ec---CCCChhheEecccceEEEEEeccccc
Confidence 0 001111111111112 22334444556666555422211 111 22 23345667777744444444332111
Q ss_pred EEEEcccCCCCCCCcccccccccccCCCCCCcccc-ccCCCCCCCCCeeEEEEccC-CcEEEEEe-----------CCeE
Q 001534 797 KLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTN-DINESKPTEESAACIALSKN-DSYVMSAS-----------GGKV 863 (1058)
Q Consensus 797 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~~i~~~~~s~d-~~~la~~s-----------dg~i 863 (1058)
.. .. .+.-.....++++|.++-+.+.. .+....- ...+.++.|..| +.++++|. .|.|
T Consensus 739 ~~-------~~-~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~-~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRI 809 (1096)
T KOG1897|consen 739 SA-------EY-YGEEYEVSFLRVLDQNTFEVLSSHEFERNET-ALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRI 809 (1096)
T ss_pred ch-------hh-cCCcceEEEEEEecCCceeEEeeccccccce-eeeeeeeeecCCCceEEEEEEEeeccCCCCcccceE
Confidence 10 00 01111112355667666554332 1222001 233444558877 78888773 2678
Q ss_pred EEEECCCceEEEEecCC--CCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEE
Q 001534 864 SLFNMMTFKVMTMFMSP--PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 941 (1058)
Q Consensus 864 ~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s 941 (1058)
.+|....+..+.....+ .+.+.++..- +|++||. -+..|++|++.+.+.++.-..|..++..+...-.|..++.
T Consensus 810 ivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~V 885 (1096)
T KOG1897|consen 810 IVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAV 885 (1096)
T ss_pred EEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEE
Confidence 89988774433333222 3445554433 6778764 5668999999998777777789999999999999999999
Q ss_pred EeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEEeCCeEEEEeC
Q 001534 942 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002 (1058)
Q Consensus 942 ~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~~d~~i~vwd~ 1002 (1058)
|+--+.+.+-.....+-. +........+ ..++++.+-.+..++.+-.+|.+.+-..
T Consensus 886 gDlm~Sitll~y~~~eg~---f~evArD~~p--~Wmtaveil~~d~ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 886 GDLMRSITLLQYKGDEGN---FEEVARDYNP--NWMTAVEILDDDTYLGAENSGNLFTVRK 941 (1096)
T ss_pred eeccceEEEEEEeccCCc---eEEeehhhCc--cceeeEEEecCceEEeecccccEEEEEe
Confidence 987777666554443311 2222221111 4478888888888887766777666554
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.6e-06 Score=95.42 Aligned_cols=307 Identities=10% Similarity=0.029 Sum_probs=171.6
Q ss_pred cEEEEEeCCCeEEEEeCCCCCceEEecCCCC----------cE-EEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCcee
Q 001534 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN----------WC-TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1058)
Q Consensus 512 ~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~----------~v-~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1058)
..+++++.++.+.-+|..+++.......... .+ ..+.. ++..++.++ .++.++.+|..+|+.+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~----~~g~l~ald~~tG~~~ 143 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGS----EKGQVYALNAEDGEVA 143 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEc----CCCEEEEEECCCCCCc
Confidence 5777777788888888888877766544321 00 00111 344555554 3778999999999988
Q ss_pred EeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCC---cceEEEeCCCCEEEEEECCCcEE
Q 001534 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA---SPRLRFNKEGSLLAVTTSDNGIK 657 (1058)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~dg~i~ 657 (1058)
.+...... ....... .+..++.+..+|.+..+|..+|+.+........... ...... .+..++.++.+|.+.
T Consensus 144 W~~~~~~~-~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~ 218 (394)
T PRK11138 144 WQTKVAGE-ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVS 218 (394)
T ss_pred ccccCCCc-eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEE
Confidence 87765432 1111122 245677788899999999999999988765321000 011111 234577788889999
Q ss_pred EEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCc
Q 001534 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1058)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1058)
.++..++..... ...... .+.
T Consensus 219 a~d~~~G~~~W~-~~~~~~----------------------------------------------------------~~~ 239 (394)
T PRK11138 219 AVLMEQGQLIWQ-QRISQP----------------------------------------------------------TGA 239 (394)
T ss_pred EEEccCChhhhe-eccccC----------------------------------------------------------CCc
Confidence 999888843221 110000 000
Q ss_pred cccccccccccccccCCcCCccceeEEecCCCcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCccccccc
Q 001534 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVA 817 (1058)
Q Consensus 738 ~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 817 (1058)
...-+++++ ...++ + .+..+++++.+|.+..+|..++.
T Consensus 240 ------~~~~~~~~~------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~------------ 277 (394)
T PRK11138 240 ------TEIDRLVDV------------------DTTPV----V--VGGVVYALAYNGNLVALDLRSGQ------------ 277 (394)
T ss_pred ------cchhccccc------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCCCC------------
Confidence 000000000 00011 0 12345555566766665543211
Q ss_pred ccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEECCCceEEEEecCCC-CCeEEEEEeCCCCC
Q 001534 818 PQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNN 895 (1058)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~ 895 (1058)
.+|... + + ....++. ++..|..++ +|.+..+|..+++.+....... ....+.... ++
T Consensus 278 -~~W~~~--------~-~------~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g- 336 (394)
T PRK11138 278 -IVWKRE--------Y-G------SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NG- 336 (394)
T ss_pred -EEEeec--------C-C------CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CC-
Confidence 122211 0 0 0111222 344455555 8999999999998876543211 122233332 33
Q ss_pred EEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEE-EEEcCCCCEEEEEeCCCcEEEEeC
Q 001534 896 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG-LAFSPTLNALVSSGADAQLCMWSI 953 (1058)
Q Consensus 896 ~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~-l~~spd~~~l~s~s~D~~i~iwd~ 953 (1058)
.|+.++.||.|++.|..+|+.+...+-....+.+ ..+ .+..|+.++.||.|..++.
T Consensus 337 ~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 337 YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 6677899999999999999988877644333332 222 2447888899999887764
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.3e-08 Score=104.85 Aligned_cols=294 Identities=11% Similarity=0.183 Sum_probs=189.7
Q ss_pred EeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCC--CcCeEEEEECC
Q 001534 341 RTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA--AISVNRCVWGP 418 (1058)
Q Consensus 341 ~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~sp 418 (1058)
..++-.+++.++.++|.|+. +|.++.-| +.+-|+...-.... .-.| .-.|..+.|||
T Consensus 19 lsl~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p~~ppr-------------------~l~h~tpw~vad~qws~ 77 (1081)
T KOG0309|consen 19 LSLKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDPFTPPR-------------------WLHHITPWQVADVQWSP 77 (1081)
T ss_pred eEEEecCcccceeeccccch-hhhhhhcC-eEEEeccCCCCCce-------------------eeeccCcchhcceeccc
Confidence 34456779999999999986 45555433 45566654321110 1112 22466788888
Q ss_pred CCC--EEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCC-ceeEEeeC
Q 001534 419 DGL--MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEG 495 (1058)
Q Consensus 419 d~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~-~~~~~l~~ 495 (1058)
... +-++......-.+|++.....-.....+.+|...|+.+.|.|.... ++++++.|..+..||+++. .++..+..
T Consensus 78 h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~ 156 (1081)
T KOG0309|consen 78 HPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSS 156 (1081)
T ss_pred CCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeec
Confidence 543 4455555556778998765444444467899999999999998877 8999999999999999885 45666666
Q ss_pred CCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCc-eEEecCCCCcEEEEEEcCCC-CEEEEEecCCCCCceEEEee
Q 001534 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWN 573 (1058)
Q Consensus 496 ~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd 573 (1058)
-...-..+.|+... ..+.+.+..+.|++||.+.+.. ...++++...++.+.|..-- ..+.+++ .|++|..||
T Consensus 157 w~s~asqVkwnyk~--p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~----~d~tvkfw~ 230 (1081)
T KOG0309|consen 157 WRSAASQVKWNYKD--PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS----NDGTVKFWD 230 (1081)
T ss_pred ccccCceeeecccC--cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC----CCCceeeec
Confidence 66667788888654 3455666778899999998765 44677777788888886532 3344544 589999999
Q ss_pred CCCCceeEeecCCCCCceeEEEEcCCCCEEEEEe--CCCeEEE---------EECCC-CceEEEEecCCCCCCcceEEEe
Q 001534 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKF---------WDMDN-MNMLTTVDADGGLPASPRLRFN 641 (1058)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i---------wd~~~-~~~~~~~~~~~~~~~v~~~~~s 641 (1058)
................++...++-|-|.-.++-- .+..+.+ |+..+ .+++.++.+|.. .|....|-
T Consensus 231 y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlWR 308 (1081)
T KOG0309|consen 231 YSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--VVLEFLWR 308 (1081)
T ss_pred ccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch--HHHHHhhh
Confidence 8754433222222333555566666554333311 1123333 33332 356777777654 34444443
Q ss_pred CC----------CCEEEEEECCCcEEEEECCCC
Q 001534 642 KE----------GSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 642 ~~----------~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
.. .-.|++-+.|.++++|.+.+.
T Consensus 309 ~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 309 KRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred hcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 22 236999999999999988653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5e-07 Score=99.50 Aligned_cols=111 Identities=13% Similarity=0.351 Sum_probs=83.8
Q ss_pred CeeEEEEecCCCeEEEEEe----CCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEE
Q 001534 348 NVMSMDFHPQQQTILLVGT----NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1058)
Q Consensus 348 ~V~~~~fspdg~~lla~g~----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l 423 (1058)
.-+-..|+|..+ ++|+++ ..|.|.||- ++|+.....+ +. -.+++++|+|..-.|
T Consensus 17 vsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-----------------~P---~hatSLCWHpe~~vL 74 (1416)
T KOG3617|consen 17 VSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT-----------------YP---VHATSLCWHPEEFVL 74 (1416)
T ss_pred cccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc-----------------cc---eehhhhccChHHHHH
Confidence 344557899887 677765 457888874 5555433211 11 125679999999999
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001534 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1058)
Q Consensus 424 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~ 485 (1058)
+.|-.-|.+.+|...+.+.-. ....|+.+|..+.||++|. .++|+..-|.|.+|...
T Consensus 75 a~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 75 AQGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEee
Confidence 999999999999988754222 4457999999999999999 89999999999999765
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5e-07 Score=86.33 Aligned_cols=147 Identities=9% Similarity=-0.037 Sum_probs=108.5
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCcee
Q 001534 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1058)
Q Consensus 411 v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~ 490 (1058)
+.++++++|++++++.+....|..|.++.................-.+..|+.... .+|++..||++.|||++.-...
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence 88999999999999999999999999987654333223334455567889998887 7999999999999999874432
Q ss_pred E-----EeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCC--------CcEEEEEEcCCCCEEE
Q 001534 491 Y-----TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG--------NWCTMMAYSADGTRLF 557 (1058)
Q Consensus 491 ~-----~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~ 557 (1058)
. +-..|.+.+..+.|++.+.-++|+..-.-+.+.+.|+++......+.... ..+..-.|+.++..+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 2 22358999999999976666777777778899999999877655433222 1255555666555555
Q ss_pred EE
Q 001534 558 SC 559 (1058)
Q Consensus 558 ~~ 559 (1058)
+.
T Consensus 319 v~ 320 (344)
T KOG4532|consen 319 VK 320 (344)
T ss_pred cc
Confidence 44
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.3e-06 Score=92.90 Aligned_cols=188 Identities=13% Similarity=0.071 Sum_probs=116.6
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEeeCCCC--CeE-----EEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCC
Q 001534 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEA--PVY-----SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG 541 (1058)
Q Consensus 469 ~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~--~v~-----~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~ 541 (1058)
.++.++.++.+.-+|.++|+.+.+...... ... .+.-.+.-.+..++.++.++.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 477777889999999999998876643220 000 0000111123577888899999999999998888766544
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCce-----eEEEEcCCCCEEEEEeCCCeEEEEE
Q 001534 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-----GVVQFDTTRNRFLAAGDEFQIKFWD 616 (1058)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd 616 (1058)
....+.... + ..++.+. .++.++.+|..+|+.+..+..... .+ ..-.. .+..++.++.+|.+..+|
T Consensus 151 ~~~ssP~v~-~-~~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 151 EALSRPVVS-D-GLVLVHT----SNGMLQALNESDGAVKWTVNLDVP-SLTLRGESAPAT--AFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ceecCCEEE-C-CEEEEEC----CCCEEEEEEccCCCEeeeecCCCC-cccccCCCCCEE--ECCEEEEEcCCCEEEEEE
Confidence 322222222 3 3455443 377899999999999888764321 10 11111 134577788899999999
Q ss_pred CCCCceEEEEecCCCC--CC---cceEEEeC--CCCEEEEEECCCcEEEEECCCCc
Q 001534 617 MDNMNMLTTVDADGGL--PA---SPRLRFNK--EGSLLAVTTSDNGIKILANSDGV 665 (1058)
Q Consensus 617 ~~~~~~~~~~~~~~~~--~~---v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~ 665 (1058)
..+|+.+......... .. ...+..+| .+..+++++.+|.+..+|..++.
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 9999877665322110 00 01111122 35567778888999999988874
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.7e-06 Score=84.53 Aligned_cols=234 Identities=13% Similarity=0.150 Sum_probs=154.4
Q ss_pred CCeeEEEEecCCCeEEEEEeCCC-cEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEE
Q 001534 347 SNVMSMDFHPQQQTILLVGTNVG-DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1058)
Q Consensus 347 ~~V~~~~fspdg~~lla~g~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~ 425 (1058)
.....++.+|+....++.+-.-| ...+||..+++.+.... ......|.+| -.||+||++|.+
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~Lyt 67 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYT 67 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEE
Confidence 34567889996666788877555 67899999998765311 1112224555 579999999998
Q ss_pred E-----eCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEc----------------CCCcEEEEEc
Q 001534 426 A-----FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG----------------DDKMIKVWDV 484 (1058)
Q Consensus 426 ~-----~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~----------------~d~~v~vwd~ 484 (1058)
. ...|.|-|||...+ +....++..|.-.-..+.+.|||+.+.++-|+ .+-++..-|.
T Consensus 68 TEnd~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~ 145 (305)
T PF07433_consen 68 TENDYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA 145 (305)
T ss_pred eccccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEec
Confidence 6 34678999999832 34444777777777889999999853333333 1235666788
Q ss_pred CCCceeEE--e--eCCCCCeEEEEecccCCccEEEEEeCCCe-------EEEEeCCCCCceEEe-------cCCCCcEEE
Q 001534 485 VAGRKQYT--F--EGHEAPVYSVCPHHKESIQFIFSTAIDGK-------IKAWLYDYLGSRVDY-------DAPGNWCTM 546 (1058)
Q Consensus 485 ~~~~~~~~--l--~~~~~~v~~~~~~~~~~~~~l~s~s~d~~-------i~~wd~~~~~~~~~~-------~~~~~~v~~ 546 (1058)
.+|+.+.+ + ..|...+.-+++..+ |..++..-..|. +-+++. ++....+ ..-.+.+-+
T Consensus 146 ~sG~ll~q~~Lp~~~~~lSiRHLa~~~~--G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gS 221 (305)
T PF07433_consen 146 RSGALLEQVELPPDLHQLSIRHLAVDGD--GTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGS 221 (305)
T ss_pred CCCceeeeeecCccccccceeeEEecCC--CcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEE
Confidence 88988766 4 337788999998854 344443322221 333322 2222222 223468999
Q ss_pred EEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCe
Q 001534 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ 611 (1058)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 611 (1058)
|++++++..+++.+. ..+.+.+||..+++.+....-. .+..++-.+++ ++++.+ .|.
T Consensus 222 Ia~~~~g~~ia~tsP---rGg~~~~~d~~tg~~~~~~~l~---D~cGva~~~~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 222 IAADRDGRLIAVTSP---RGGRVAVWDAATGRLLGSVPLP---DACGVAPTDDG-FLVSSG-QGQ 278 (305)
T ss_pred EEEeCCCCEEEEECC---CCCEEEEEECCCCCEeeccccC---ceeeeeecCCc-eEEeCC-Ccc
Confidence 999999999987764 5788999999999988776654 35566666665 555544 344
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.3e-08 Score=102.25 Aligned_cols=288 Identities=9% Similarity=0.087 Sum_probs=180.2
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcc-ccccCcceeecccccccccccccccCCCcCeEEEEECCCCCE
Q 001534 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE-RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1058)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~ 422 (1058)
.|...|.+++--.+.. -+++++.|.+|++|.++... .+.+.. ..-.+..|+.+|.++.|-.|.++
T Consensus 733 GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsa-------------CQfTY~aHkk~i~~igfL~~lr~ 798 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSA-------------CQFTYQAHKKPIHDIGFLADLRS 798 (1034)
T ss_pred CcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccce-------------eeeEhhhccCcccceeeeeccce
Confidence 3888888886544443 46788999999999997532 221101 11226779999999999999998
Q ss_pred EEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecC-CCceEEEEEcCCCcEEEEEcCCCceeEEee-----CC
Q 001534 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-----GH 496 (1058)
Q Consensus 423 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d-~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~-----~~ 496 (1058)
++++ ||.|.+||.--+..+.+...-. ..+.+..+..-++ .+.++++.++...+|+++|.+.+.....++ +.
T Consensus 799 i~Sc--D~giHlWDPFigr~Laq~~dap-k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P 875 (1034)
T KOG4190|consen 799 IASC--DGGIHLWDPFIGRLLAQMEDAP-KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP 875 (1034)
T ss_pred eeec--cCcceeecccccchhHhhhcCc-ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCC
Confidence 8765 8889999987766554322212 2233444444454 344355555889999999999887766654 34
Q ss_pred CCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEE-eeCC
Q 001534 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE-WNES 575 (1058)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~-wd~~ 575 (1058)
.+.+.+++..+ .|+.++.+-.+|+|.+.|.+++..+..+....-....++- |..+.++... -+..+.+ |..-
T Consensus 876 na~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~sa----ldHslaVnWhal 948 (1034)
T KOG4190|consen 876 NALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSA----LDHSLAVNWHAL 948 (1034)
T ss_pred chheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhc----ccceeEeeehhc
Confidence 45678888875 4589999999999999999998776655544333333332 4444444333 2555666 7665
Q ss_pred CCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCC----CceEEEEecCCCCCCcceEEEeCCCCEEEEEE
Q 001534 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN----MNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1058)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 651 (1058)
.|......+.... +..- .-.-|..++++.....+.+|--.. ...+..+....-.+..++++.-|-+..+..|.
T Consensus 949 dgimh~q~kpppe-pahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGn 1025 (1034)
T KOG4190|consen 949 DGIMHLQDKPPPE-PAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGN 1025 (1034)
T ss_pred CCeeeeccCCCCc-chhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccC
Confidence 5544333332221 1110 112356677777777777874221 12233343333334567788888666677788
Q ss_pred CCCcEEE
Q 001534 652 SDNGIKI 658 (1058)
Q Consensus 652 ~dg~i~i 658 (1058)
..|.|.+
T Consensus 1026 e~G~IaL 1032 (1034)
T KOG4190|consen 1026 EHGAIAL 1032 (1034)
T ss_pred CCCceee
Confidence 8888765
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.3e-06 Score=79.59 Aligned_cols=248 Identities=9% Similarity=0.089 Sum_probs=138.3
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCCC
Q 001534 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1058)
Q Consensus 351 ~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~ 430 (1058)
.++.++||+ +||+ -.|..|.|-..+..=.-.. ....+.++..-.=.-++||||+..||.+...|
T Consensus 2 ~~~~~~~Gk-~lAi-~qd~~iEiRsa~Ddf~si~--------------~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G 65 (282)
T PF15492_consen 2 HLALSSDGK-LLAI-LQDQCIEIRSAKDDFSSII--------------GKCQVPKDPNPQWRKLAWSPDCTLLAYAESTG 65 (282)
T ss_pred ceeecCCCc-EEEE-EeccEEEEEeccCCchhee--------------EEEecCCCCCchheEEEECCCCcEEEEEcCCC
Confidence 467788998 6665 3577887776654311110 01111233333456799999999999999999
Q ss_pred eEEEEEecCCCceee--eeeee-cCcCCeEEEEEecCC-----CceEEEEEcCCCcEEEEEcCCC-----ceeEEee--C
Q 001534 431 IVHLYTYNPTGELRQ--HLEID-AHVGGVNDIAFAHPN-----KQLCIVTCGDDKMIKVWDVVAG-----RKQYTFE--G 495 (1058)
Q Consensus 431 ~i~vwd~~~~~~~~~--~~~~~-~h~~~v~~~~fs~d~-----~~~~l~s~~~d~~v~vwd~~~~-----~~~~~l~--~ 495 (1058)
+|+++|+.+...... ...+. .-...|..|.|.+-. .. -|+.-..+|.++-|-+..| +..+++. .
T Consensus 66 ~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~ 144 (282)
T PF15492_consen 66 TIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS 144 (282)
T ss_pred eEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEEEcccCCcceeeEEEEecc
Confidence 999999987443211 00011 123467777786543 11 3555566777777765332 3334443 2
Q ss_pred -CCCCeEEEEecccCCccEEEEEeCCCe-EEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEE--EEecCCC--CCceE
Q 001534 496 -HEAPVYSVCPHHKESIQFIFSTAIDGK-IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF--SCGTSKE--GESHL 569 (1058)
Q Consensus 496 -~~~~v~~~~~~~~~~~~~l~s~s~d~~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--~~~~~~~--~~~~i 569 (1058)
+...|.++.++|.. ++|+.|+.... -..+ ......+++-..-.+..+.. ....+.. ...+.
T Consensus 145 ~yp~Gi~~~vy~p~h--~LLlVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~ 211 (282)
T PF15492_consen 145 HYPHGINSAVYHPKH--RLLLVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRR 211 (282)
T ss_pred cCCCceeEEEEcCCC--CEEEEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEEccccCcccccccccc
Confidence 46789999999765 56666654221 0000 01111122222211111111 1110000 00112
Q ss_pred EEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecC
Q 001534 570 VEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1058)
Q Consensus 570 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1058)
.+|.+-+.+.. ...+.....|..+..+|||..|++...+|.|.+|++.+-++......+
T Consensus 212 ~~~~~~~~~~f-s~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 212 GLLRIPSFKFF-SRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ceeeccceeee-eccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 33333322221 122334447999999999999999999999999999988877766544
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.9e-08 Score=97.20 Aligned_cols=165 Identities=16% Similarity=0.107 Sum_probs=115.7
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEE-
Q 001534 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA- 426 (1058)
Q Consensus 348 ~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~- 426 (1058)
.+..+.++|+++ ++|++..+....++++...... .++++.. .-...-+++.|..+......+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~~------------~v~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDVS------------CVPKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeEe------------ecccCcceeeeeeccceEEEEe
Confidence 556677788887 8888887888778887765431 1111110 111223445555555544444
Q ss_pred --eCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEe-eCCCCCeEEE
Q 001534 427 --FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAPVYSV 503 (1058)
Q Consensus 427 --~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l-~~~~~~v~~~ 503 (1058)
+....+.+|....+... .+-||-+.+++++|+||++ +++++..|..|++-....-..+..| -||...|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 44556666666653322 4458999999999999998 8999999999999877665555554 4799999999
Q ss_pred EecccCCccEEEEEeCCCeEEEEeCCCCCceEEec
Q 001534 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538 (1058)
Q Consensus 504 ~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~ 538 (1058)
+..++ ..|+++|.|+++++||+.+++....+.
T Consensus 201 sl~~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLTDN---YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeccC---ceeeecCCCCcEEEEecccCCcccccc
Confidence 98743 579999999999999999988775443
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.9e-06 Score=83.04 Aligned_cols=191 Identities=14% Similarity=0.163 Sum_probs=127.9
Q ss_pred EEEccCCcEEEEEeCCeEEEEECCCc--eEEE---EecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEE
Q 001534 846 IALSKNDSYVMSASGGKVSLFNMMTF--KVMT---MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920 (1058)
Q Consensus 846 ~~~s~d~~~la~~sdg~i~iwd~~~~--~~~~---~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l 920 (1058)
++.+.||+.||+.-|..|.|-..++. ..+. .-+.....-+.++||| |+.+||.+...|+|+++|+...++. .+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf-~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELF-VI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeE-Ec
Confidence 67889999999999999998876641 2222 2333455678999999 9999999999999999999765432 33
Q ss_pred eC-C------CCCeEEEEEcCC------CCEEEEEeCCCcEEEEeCCCCc---cccceeeecCCCCCCCCCCeeEEEEcC
Q 001534 921 KG-H------QNRITGLAFSPT------LNALVSSGADAQLCMWSIDKWE---KLKSRFIQAPAGRQSPLVGETKVQFHN 984 (1058)
Q Consensus 921 ~~-h------~~~v~~l~~spd------~~~l~s~s~D~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~fs~ 984 (1058)
.. + ...|..|.|.+- ...|.....+|.++=|-+..+. -............. ..|.++.+.|
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp---~Gi~~~vy~p 157 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP---HGINSAVYHP 157 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC---CceeEEEEcC
Confidence 22 1 346777777542 1246667788888877764322 22222223222222 6799999999
Q ss_pred CCcEEEEE--e---C-------CeEEEEeC-CCCe-----------ee---------E-Ee--e--------ccccceEE
Q 001534 985 DQTHLLVV--H---E-------SQISVYDS-KLEC-----------SR---------S-VS--F--------LSLCPYVF 1020 (1058)
Q Consensus 985 d~~~l~~~--~---d-------~~i~vwd~-~~~~-----------~~---------~-~~--~--------~~~~~~~~ 1020 (1058)
..++|++| . + ..+.-|.+ +... +. . .. . -.+-.+..
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL 237 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence 99998885 2 1 13677776 2111 10 0 00 0 01456678
Q ss_pred ccCCcEEEEEECCCeEEEEcC
Q 001534 1021 GVSSIFLLSTLTKLSVAVHDP 1041 (1058)
Q Consensus 1021 s~~~~~l~~~~~d~~v~vw~~ 1041 (1058)
||||+.|++...+|++.+|++
T Consensus 238 SPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 238 SPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred CCCCCEEEEEEcCCeEEEEec
Confidence 999999999999999999984
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.7e-07 Score=91.07 Aligned_cols=77 Identities=14% Similarity=0.259 Sum_probs=57.8
Q ss_pred CCCCCCCeeEEEEccCCcEEEEEeCCeEEEEECCCce---EEEEecCCC-----CCeEEEEEeCCCCCEEEEEeCCCeEE
Q 001534 836 SKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK---VMTMFMSPP-----PAATFLAFHPQDNNIIAIGMEDSSVQ 907 (1058)
Q Consensus 836 ~~h~~~~i~~~~~s~d~~~la~~sdg~i~iwd~~~~~---~~~~~~~~~-----~~i~~l~~s~~~~~~lasg~~dg~I~ 907 (1058)
..| .--+.++.|..|...++++.|=.|-+|++.--. -+..++.|. ..|++..|+|.....+...+..|.|+
T Consensus 169 NaH-~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAH-PYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccc-eeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 346 777899999999999999999999999986421 122233343 34788889987677777788888888
Q ss_pred EEEccc
Q 001534 908 IYNVRV 913 (1058)
Q Consensus 908 iwd~~~ 913 (1058)
+-|++.
T Consensus 248 l~DlRq 253 (460)
T COG5170 248 LNDLRQ 253 (460)
T ss_pred ehhhhh
Confidence 888763
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.9e-06 Score=80.40 Aligned_cols=235 Identities=9% Similarity=-0.008 Sum_probs=154.6
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCC
Q 001534 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1058)
Q Consensus 419 d~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~ 498 (1058)
.-.+||.|+..|...+|...+.+.... ....|...|+-+.=..|.+. -+..++.|.++++.+++.+.....+....-
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~--~cd~snn~v~~~~r~cd~~~-~~~i~sndht~k~~~~~~~s~~~~~h~~~~ 159 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLY--QCDVSNNDVTLVKRYCDLKF-PLNIASNDHTGKTMVVSGDSNKFAVHNQNL 159 (344)
T ss_pred cccEEEeccccceeeeecccCccccee--eecccccchhhhhhhccccc-ceeeccCCcceeEEEEecCcccceeecccc
Confidence 345899999999999999987653322 22234443333322233333 466788899999999876544333221222
Q ss_pred CeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceE---EecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCC
Q 001534 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1058)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1058)
.+.++++++ ++.++++.+....|..|.++....-. ........-.+..|+.....++++. .|+++.+||++
T Consensus 160 ~~ns~~~sn--d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~----Qdg~~~I~DVR 233 (344)
T KOG4532|consen 160 TQNSLHYSN--DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF----QDGTCAIYDVR 233 (344)
T ss_pred ceeeeEEcC--CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe----cCCcEEEEEec
Confidence 377777775 55899999999999999988755433 2233334556788999999999987 48899999998
Q ss_pred CCceeE----eecCCCCCceeEEEEcCCCC--EEEEEeCCCeEEEEECCCCceEEEEecCCCC------CCcceEEEeCC
Q 001534 576 EGAIKR----TYSGFRKRSLGVVQFDTTRN--RFLAAGDEFQIKFWDMDNMNMLTTVDADGGL------PASPRLRFNKE 643 (1058)
Q Consensus 576 ~~~~~~----~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s~~ 643 (1058)
...... .-+.++.+.++.+.|++.|. +|+..-.-+.+.+.|+++++..+.+...... ..|....|+.+
T Consensus 234 ~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~ 313 (344)
T KOG4532|consen 234 NMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNE 313 (344)
T ss_pred ccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCC
Confidence 654322 22334555899999998664 3444445678999999998877766443221 24667778877
Q ss_pred CCEEEEEECCCcEEEEECCC
Q 001534 644 GSLLAVTTSDNGIKILANSD 663 (1058)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~ 663 (1058)
+..+.+.+.+ .+.-|++..
T Consensus 314 n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 314 NESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred Ccccccccch-hhheeeccc
Confidence 7777666655 444555543
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.4e-05 Score=74.87 Aligned_cols=147 Identities=8% Similarity=0.029 Sum_probs=96.3
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCCCe
Q 001534 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1058)
Q Consensus 352 ~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~ 431 (1058)
+..-+|.+++++.|+..+.+.--|..+|+..= ... -...|.+-+.- -|++++.|...|.
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~W-------e~i-------------lg~RiE~sa~v-vgdfVV~GCy~g~ 74 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIW-------EAI-------------LGVRIECSAIV-VGDFVVLGCYSGG 74 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEe-------ehh-------------hCceeeeeeEE-ECCEEEEEEccCc
Confidence 34456677899999999999999999987642 110 11222222211 5778999999999
Q ss_pred EEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCc
Q 001534 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI 511 (1058)
Q Consensus 432 i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~ 511 (1058)
+++.+.++|+.......+..-. ......+++. ++..|+.|++.+..|..+..++.+.+...+...+-++.+. +
T Consensus 75 lYfl~~~tGs~~w~f~~~~~vk---~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~- 147 (354)
T KOG4649|consen 75 LYFLCVKTGSQIWNFVILETVK---VRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D- 147 (354)
T ss_pred EEEEEecchhheeeeeehhhhc---cceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-
Confidence 9999999997766443322111 1233456777 8999999999999999999999887654443334444442 2
Q ss_pred cEEEEEeCCCeEEEE
Q 001534 512 QFIFSTAIDGKIKAW 526 (1058)
Q Consensus 512 ~~l~s~s~d~~i~~w 526 (1058)
..|+.+...|.+.--
T Consensus 148 ~sly~a~t~G~vlav 162 (354)
T KOG4649|consen 148 GSLYAAITAGAVLAV 162 (354)
T ss_pred ceEEEEeccceEEEE
Confidence 344455555554433
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.5e-05 Score=81.16 Aligned_cols=218 Identities=18% Similarity=0.178 Sum_probs=142.2
Q ss_pred EEEECC-CCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEe-cCCCceEEEEEcCCCcEEEEEcCCCcee
Q 001534 413 RCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1058)
Q Consensus 413 ~~~~sp-d~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs-~d~~~~~l~s~~~d~~v~vwd~~~~~~~ 490 (1058)
+++|.+ ++.++++--..+.|..|+..++.... +. .. ....+++. +++. ++.+... .+.++|+.+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~-~~-~~~G~~~~~~~g~---l~v~~~~-~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----ID-LP-GPNGMAFDRPDGR---LYVADSG-GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EE-SS-SEEEEEEECTTSE---EEEEETT-CEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----Ee-cC-CCceEEEEccCCE---EEEEEcC-ceEEEecCCCcEE
Confidence 567888 66677777778999999998864321 11 12 27778888 6654 4545544 4566699888654
Q ss_pred EEeeC-----CCCCeEEEEecccCCccEEEEEeCC--------CeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEE
Q 001534 491 YTFEG-----HEAPVYSVCPHHKESIQFIFSTAID--------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1058)
Q Consensus 491 ~~l~~-----~~~~v~~~~~~~~~~~~~l~s~s~d--------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1058)
..... .....+.+++.+ +|.+.++.... |.|..++.. .........-...+.++|+|+++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~--~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDP--DGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-T--TS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEcC--CCCEEEEecCCCccccccccceEEECCC--CeEEEEecCcccccceEECCcchhee
Confidence 43322 345677888875 45666665543 456666666 33333333345678999999999887
Q ss_pred EEecCCCCCceEEEeeCCCCce----eEee---cCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCC
Q 001534 558 SCGTSKEGESHLVEWNESEGAI----KRTY---SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630 (1058)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~----~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (1058)
.+.. ..+.|..+++..... ...+ ....+ ....+++..+|+..++....+.|.++|.+ |+.+..+....
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g-~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~ 224 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPG-YPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV 224 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSC-EEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCc-CCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC
Confidence 6543 467799998853221 1222 22211 36789999999988887789999999988 88888888763
Q ss_pred CCCCcceEEEe-CCCCEEEEEE
Q 001534 631 GLPASPRLRFN-KEGSLLAVTT 651 (1058)
Q Consensus 631 ~~~~v~~~~~s-~~~~~l~~~~ 651 (1058)
. .+++++|. ++.+.|++.+
T Consensus 225 ~--~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 225 P--RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp S--SEEEEEEESTTSSEEEEEE
T ss_pred C--CEEEEEEECCCCCEEEEEe
Confidence 3 68899995 6767776654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.2e-07 Score=86.53 Aligned_cols=210 Identities=13% Similarity=0.214 Sum_probs=125.2
Q ss_pred eeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeC
Q 001534 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 428 (1058)
Q Consensus 349 V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~ 428 (1058)
|+.+.|+.+. .|+++..++.+.......+.+.. .|+-.....++ ..+..|.++-.+-+.+-.+..+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~--~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPF--KVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCce--eeeeccCCCCCcccccccCCceEecCC
Confidence 7777777764 57777777777776665544332 11111111111 112234444444445556778999999
Q ss_pred CCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEc-----CCCcEEEEEcCCCceeEEeeCCCCCeEEE
Q 001534 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-----DDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1058)
Q Consensus 429 d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~-----~d~~v~vwd~~~~~~~~~l~~~~~~v~~~ 503 (1058)
||.+.+.+.+.- ++.......-...--+.+....++ .+.++. .-+..+.|+++..+.+..-......|.++
T Consensus 110 dg~~~v~s~~~~--~~~~~~i~~~~~~~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l 185 (319)
T KOG4714|consen 110 DGSLAVFSTDKD--LALMSRIPSIHSGSASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTAL 185 (319)
T ss_pred CceEEEEechHH--Hhhhhhcccccccccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchhh
Confidence 999999998762 111111111111112223333344 233322 12244556554332221111122349999
Q ss_pred EecccCCccEEEEEeCCCeEEEEeCCCCCceE-EecCCCCcEEEEEEcC-CCCEEEEEecCCCCCceEEEeeCCC
Q 001534 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESE 576 (1058)
Q Consensus 504 ~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1058)
+-+|... +.+++|+.||.+-+||.++..... .+..|..++..+-|+| ++..|++++ ++|.+.-||..+
T Consensus 186 ~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s----edGslw~wdas~ 255 (319)
T KOG4714|consen 186 CSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS----EDGSLWHWDAST 255 (319)
T ss_pred hCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec----CCCcEEEEcCCC
Confidence 9888765 789999999999999999875443 4677888999999998 577888887 488899999764
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-06 Score=89.47 Aligned_cols=211 Identities=10% Similarity=0.139 Sum_probs=142.6
Q ss_pred CcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCC--C-ceeEEeeCCCCCeEEEEecccCCccEEEEEeC-CCeEEEEe
Q 001534 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--G-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWL 527 (1058)
Q Consensus 452 h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~--~-~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~-d~~i~~wd 527 (1058)
|...|+.+.-+. .+ ++.+++.||.++.|--.. | +.+..+..|-+.+.+++.+. ++-.+.+.+. |..++++|
T Consensus 8 hrd~i~hv~~tk-a~--fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~--dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AK--FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY--DGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred ccceeeeEeeeh-hh--eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc--cceeEeeccCcccceeEEE
Confidence 777787776654 34 799999999999997432 1 23445667888888888774 5577888777 99999999
Q ss_pred CCCCCceEEecC--CCCcEEEEEEcCC-CC-EEEEEecCCCCCceEEEeeCCCCc-eeEeecCCCCCceeEEEEcCCCCE
Q 001534 528 YDYLGSRVDYDA--PGNWCTMMAYSAD-GT-RLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNR 602 (1058)
Q Consensus 528 ~~~~~~~~~~~~--~~~~v~~~~~s~~-~~-~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~ 602 (1058)
+++.....-+.. ..+.+..+ .++. -. .+++... .++.+.++|-.... ...-+.+.+..+|.++.+.+.+..
T Consensus 83 vEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~---~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLF---KSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred eeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecc---cCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 987655432221 22222111 1221 12 2333222 47789999976543 444444444448999999999999
Q ss_pred EEEEeCCCeEEEEECCC------CceEEEEe-------cCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeee
Q 001534 603 FLAAGDEFQIKFWDMDN------MNMLTTVD-------ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1058)
Q Consensus 603 l~~~~~dg~i~iwd~~~------~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 669 (1058)
+++....|.|.-|.... .+....++ .........++.|+|+|..+.+-+.|..|++++..++ .+++
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvq 237 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQ 237 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhh
Confidence 99999999999999873 11111111 1122335678999999999999999999999999988 5555
Q ss_pred ccc
Q 001534 670 MLE 672 (1058)
Q Consensus 670 ~~~ 672 (1058)
.+.
T Consensus 238 eiD 240 (558)
T KOG0882|consen 238 EID 240 (558)
T ss_pred hhh
Confidence 543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.5e-06 Score=84.58 Aligned_cols=220 Identities=15% Similarity=0.112 Sum_probs=140.2
Q ss_pred CCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEeccc
Q 001534 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508 (1058)
Q Consensus 429 d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~ 508 (1058)
+|.|..||..+|+.+-... +..-.....+. ..+++. .+++++.++.+..||..+|+.+..+.. ...+.... .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~-~~~~~~~~~~~-~~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~---~ 73 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYD-LGPGIGGPVAT-AVPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP---V 73 (238)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSSCSSEEET-EEEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE---E
T ss_pred CCEEEEEECCCCCEEEEEE-CCCCCCCccce-EEEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee---e
Confidence 6889999998887765432 21111122211 333455 577778899999999999999887765 22211111 1
Q ss_pred CCccEEEEEeCCCeEEEEeCCCCCceEEe-cCCC---CcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeec
Q 001534 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPG---NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1058)
Q Consensus 509 ~~~~~l~s~s~d~~i~~wd~~~~~~~~~~-~~~~---~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1058)
..+..++.++.++.++.+|..+++..... .... ..........++..++++.. ++.|+.+|+++|+.+....
T Consensus 74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEEE
T ss_pred ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEee
Confidence 12356777778889999999999988873 3221 11222333334777777753 7789999999999988887
Q ss_pred CCCCCc---------eeEEEEcCCCCEEEEEeCCCe-EEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCC
Q 001534 585 GFRKRS---------LGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1058)
Q Consensus 585 ~~~~~~---------v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 654 (1058)
...... +..-....++ .++.++.++. +.+ |+.+++.+.... .. .+.. ....++..|++++.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~---~~~~-~~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-IS---GIYS-LPSVDGGTLYVTSSDG 222 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTT
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CC---CccC-CceeeCCEEEEEeCCC
Confidence 644211 1122222344 7777777775 555 999999775333 21 1222 2456788888888999
Q ss_pred cEEEEECCCCcee
Q 001534 655 GIKILANSDGVRL 667 (1058)
Q Consensus 655 ~i~iw~~~~~~~~ 667 (1058)
.|..||..+++..
T Consensus 223 ~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 223 RLYALDLKTGKVV 235 (238)
T ss_dssp EEEEEETTTTEEE
T ss_pred EEEEEECCCCCEE
Confidence 9999999999543
|
... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.5e-06 Score=83.69 Aligned_cols=249 Identities=13% Similarity=0.131 Sum_probs=151.7
Q ss_pred cccCCCcCeEEEEECCCCC-EEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEE
Q 001534 403 LLNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1058)
Q Consensus 403 ~~~~h~~~v~~~~~spd~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~v 481 (1058)
++.+|...|..++|||..+ ++..++.+..|+|.|+.+...+. .+..| ..+++++|.-|..+ +++.|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5788999999999999877 78889999999999999976655 45556 78999999999877 8999999999999
Q ss_pred EEcCCCce-eEEeeC--CCCCeEEEEeccc----CCccEEEEEeCCCeEEEEeCCC--CCceEEecC-CCCcEEEEEEcC
Q 001534 482 WDVVAGRK-QYTFEG--HEAPVYSVCPHHK----ESIQFIFSTAIDGKIKAWLYDY--LGSRVDYDA-PGNWCTMMAYSA 551 (1058)
Q Consensus 482 wd~~~~~~-~~~l~~--~~~~v~~~~~~~~----~~~~~l~s~s~d~~i~~wd~~~--~~~~~~~~~-~~~~v~~~~~s~ 551 (1058)
||++..+- +..+.+ ...+|..++.-+. +.|.+++..+.+ +..|++.- ......... ..+.+.++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986542 222222 2334444432211 122344444443 33454332 222222222 245666777777
Q ss_pred CCCEEEEEecCCCCCceEE----EeeCCCCceeEeec-CCCCC---c---eeEEEEcCCCCEEEE-EeCCCeEEEEECCC
Q 001534 552 DGTRLFSCGTSKEGESHLV----EWNESEGAIKRTYS-GFRKR---S---LGVVQFDTTRNRFLA-AGDEFQIKFWDMDN 619 (1058)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~----~wd~~~~~~~~~~~-~~~~~---~---v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 619 (1058)
-.++++....+..+..+++ -.|-.+|.++..-+ ++.+. . -..+.-.++.++++. +++.+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 7777776654321111111 12223344333221 11010 0 011222455566665 55678899999999
Q ss_pred CceEEEEecCCCCCCcceEEEeC--CCCEEEEEECCCcEEEEECC
Q 001534 620 MNMLTTVDADGGLPASPRLRFNK--EGSLLAVTTSDNGIKILANS 662 (1058)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~ 662 (1058)
++.++++.... +|..+.... .+.+|++-++| .++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LTd~-~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLTDD-RVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhheecc-eEEEEecC
Confidence 99999997762 466555443 34466666554 88888654
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.7e-07 Score=93.78 Aligned_cols=162 Identities=13% Similarity=0.168 Sum_probs=107.1
Q ss_pred CCeeEEEEccCCcEEEEEe-CCeEEEEECCCc----eEEEEecCCCCCeEEEEEeCCCCCEEEE---EeCCCeEEEEEcc
Q 001534 841 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTF----KVMTMFMSPPPAATFLAFHPQDNNIIAI---GMEDSSVQIYNVR 912 (1058)
Q Consensus 841 ~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~~s~~~~~~las---g~~dg~I~iwd~~ 912 (1058)
.....+..++++++||++. +....++++... ++...... ...-+++.|.. +...+.. +++...+.+|...
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIR-EDTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeee-ccceEEEEeecCCceeeeeeccc
Confidence 3445667888999999887 455556655432 23332222 12233444444 2223333 3444556666666
Q ss_pred cceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEE
Q 001534 913 VDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1058)
Q Consensus 913 ~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~ 992 (1058)
.+.+ ..+-||-.-++.++||||++++++++.|..|+|-....--.... ..-||. .-|..++.-++..++-.|
T Consensus 141 ~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ies----fclGH~---eFVS~isl~~~~~LlS~s 212 (390)
T KOG3914|consen 141 SGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIES----FCLGHK---EFVSTISLTDNYLLLSGS 212 (390)
T ss_pred ccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhh----hccccH---hheeeeeeccCceeeecC
Confidence 5443 45668999999999999999999999999999998877443333 233555 457888888777644445
Q ss_pred eCCeEEEEeC-CCCeeeEEee
Q 001534 993 HESQISVYDS-KLECSRSVSF 1012 (1058)
Q Consensus 993 ~d~~i~vwd~-~~~~~~~~~~ 1012 (1058)
.|++|++||+ +++++..+..
T Consensus 213 GD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 213 GDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CCCcEEEEecccCCcccccch
Confidence 9999999999 8888866644
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.8e-05 Score=77.92 Aligned_cols=220 Identities=15% Similarity=0.107 Sum_probs=142.7
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEEC-CCCCEEEEEeCC
Q 001534 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG-PDGLMLGVAFSK 429 (1058)
Q Consensus 351 ~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-pd~~~l~~~~~d 429 (1058)
+++|.+....|+.+....+.|..|+..+++... +. .. ....+++. +++. |+.+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--------------------~~-~~-~~~G~~~~~~~g~-l~v~~~~ 60 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--------------------ID-LP-GPNGMAFDRPDGR-LYVADSG 60 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--------------------EE-SS-SEEEEEEECTTSE-EEEEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--------------------Ee-cC-CCceEEEEccCCE-EEEEEcC
Confidence 678998444588887788999999999876432 11 11 16677777 5654 4455555
Q ss_pred CeEEEEEecCCCceeeeeeee--c-CcCCeEEEEEecCCCceEEEEEcCC--------CcEEEEEcCCCceeEEeeCCCC
Q 001534 430 HIVHLYTYNPTGELRQHLEID--A-HVGGVNDIAFAHPNKQLCIVTCGDD--------KMIKVWDVVAGRKQYTFEGHEA 498 (1058)
Q Consensus 430 ~~i~vwd~~~~~~~~~~~~~~--~-h~~~v~~~~fs~d~~~~~l~s~~~d--------~~v~vwd~~~~~~~~~l~~~~~ 498 (1058)
+ +.++|..+++.. ...... . .....+++++.|+|+ +.++.... |.|..++.. ++..... ..-.
T Consensus 61 ~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~ 134 (246)
T PF08450_consen 61 G-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLG 134 (246)
T ss_dssp C-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEES
T ss_pred c-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEe-cCcc
Confidence 4 455598886432 222332 1 345689999999998 56655433 457777766 5543333 3455
Q ss_pred CeEEEEecccCCccEE-EEEeCCCeEEEEeCCCCCc-e---E-Ee--cCCCCcEEEEEEcCCCCEEEEEecCCCCCceEE
Q 001534 499 PVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGS-R---V-DY--DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1058)
Q Consensus 499 ~v~~~~~~~~~~~~~l-~s~s~d~~i~~wd~~~~~~-~---~-~~--~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1058)
..+.++|++++ +.| ++-+..+.|..++++.... . . .. ....+..-.+++..+|+..++.. ..+.|.
T Consensus 135 ~pNGi~~s~dg--~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~----~~~~I~ 208 (246)
T PF08450_consen 135 FPNGIAFSPDG--KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW----GGGRIV 208 (246)
T ss_dssp SEEEEEEETTS--SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE----TTTEEE
T ss_pred cccceEECCcc--hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc----CCCEEE
Confidence 67899999654 555 5677889999999875443 1 1 12 22223478899999998877654 377899
Q ss_pred EeeCCCCceeEeecCCCCCceeEEEE-cCCCCEEEEEe
Q 001534 571 EWNESEGAIKRTYSGFRKRSLGVVQF-DTTRNRFLAAG 607 (1058)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~ 607 (1058)
++|.. |+.+..+..... .+++++| .++.+.|+..+
T Consensus 209 ~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEEE
T ss_pred EECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEEe
Confidence 99987 888888877644 7889999 46666666543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.6e-06 Score=90.88 Aligned_cols=138 Identities=17% Similarity=0.156 Sum_probs=91.8
Q ss_pred EccCCcEEEEEeCCeEEEEECCC-----ceEEEEecCCCCCeEEEEEeCCCCCEEEE-EeCCCeEEEEEccccee-----
Q 001534 848 LSKNDSYVMSASGGKVSLFNMMT-----FKVMTMFMSPPPAATFLAFHPQDNNIIAI-GMEDSSVQIYNVRVDEV----- 916 (1058)
Q Consensus 848 ~s~d~~~la~~sdg~i~iwd~~~-----~~~~~~~~~~~~~i~~l~~s~~~~~~las-g~~dg~I~iwd~~~~~~----- 916 (1058)
+.+||++... .+++|.+.|..+ .+.+..+. -......+++|| ||+++++ +..+.+|.|.|+.+.+.
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 4457887665 478899999988 34555444 345678899999 7776655 44588999999987542
Q ss_pred -------EEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC------Cc----cccceeeecCCCCCCCCCCeeE
Q 001534 917 -------KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK------WE----KLKSRFIQAPAGRQSPLVGETK 979 (1058)
Q Consensus 917 -------~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~------~~----~~~~~~~~~~~~~~~~~~~v~~ 979 (1058)
.....--.+ ....+|.++|....|---|..|..|++++ |+ .+....++...||.. ....
T Consensus 361 ~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~---~~~g 436 (635)
T PRK02888 361 IKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNH---ASMG 436 (635)
T ss_pred CCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceee---ecCC
Confidence 333333233 34578999999888888999999999986 22 222233344445531 1112
Q ss_pred EEEcCCCcEEEEE
Q 001534 980 VQFHNDQTHLLVV 992 (1058)
Q Consensus 980 ~~fs~d~~~l~~~ 992 (1058)
=.-.|||+||++.
T Consensus 437 ~t~~~dgk~l~~~ 449 (635)
T PRK02888 437 ETKEADGKWLVSL 449 (635)
T ss_pred CcCCCCCCEEEEc
Confidence 2347899999984
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.2e-05 Score=87.30 Aligned_cols=102 Identities=17% Similarity=0.152 Sum_probs=71.7
Q ss_pred CCCeeEEEEccCCcEEEEEe--CCeEEEEECCCceE------------EEEecCCCCCeEEEEEeCCCCCEEEEEeCCCe
Q 001534 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKV------------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSS 905 (1058)
Q Consensus 840 ~~~i~~~~~s~d~~~la~~s--dg~i~iwd~~~~~~------------~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~ 905 (1058)
......+++||||+++++++ +++|.|+|+.+.+. .....- .......+|.+ +|....+-.-|.+
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg-~G~aytslf~dsq 397 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDG-RGNAYTTLFLDSQ 397 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECC-CCCEEEeEeecce
Confidence 45566899999999999887 79999999987542 222221 22345678898 7888888999999
Q ss_pred EEEEEccc----------ceeEEEEeCCCCCeE-----EEEEcCCCCEEEEEe
Q 001534 906 VQIYNVRV----------DEVKTKLKGHQNRIT-----GLAFSPTLNALVSSG 943 (1058)
Q Consensus 906 I~iwd~~~----------~~~~~~l~~h~~~v~-----~l~~spd~~~l~s~s 943 (1058)
|..|++.+ ...+..+.-|-.+.. .=.-.|||++|++..
T Consensus 398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 398 IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 99999986 344555544433322 122367899988864
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.1e-05 Score=78.71 Aligned_cols=95 Identities=17% Similarity=0.117 Sum_probs=67.2
Q ss_pred CceEEEeeCCCCceeEeecCCCC-CceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCC
Q 001534 566 ESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1058)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1058)
++.|..||.++|+.+........ ....+. ..+++..+++++.++.++.||..+|+.+......... .... ..++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~---~~~~-~~~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPI---SGAP-VVDG 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCG---GSGE-EEET
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccc---ccee-eecc
Confidence 57799999999999988865221 111111 2335678888899999999999999999988874332 1111 3345
Q ss_pred CEEEEEECCCcEEEEECCCCc
Q 001534 645 SLLAVTTSDNGIKILANSDGV 665 (1058)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~ 665 (1058)
..+++++.++.++.+|..++.
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~ 97 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGK 97 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSC
T ss_pred cccccccceeeeEecccCCcc
Confidence 667777788899999988773
|
... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.4e-07 Score=63.86 Aligned_cols=39 Identities=28% Similarity=0.587 Sum_probs=37.2
Q ss_pred ceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001534 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1058)
Q Consensus 914 ~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd 952 (1058)
|+++.++.+|.++|++|+|+|++++|+|++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.9e-05 Score=85.18 Aligned_cols=266 Identities=15% Similarity=0.209 Sum_probs=148.0
Q ss_pred ecCCCeEEEEE--------eCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEE
Q 001534 355 HPQQQTILLVG--------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1058)
Q Consensus 355 spdg~~lla~g--------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~ 426 (1058)
|||++.+|+.- +..+.+.|||+.+++... +......+....|||||+.+|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 68888655522 234688999999876543 22225678899999999999988
Q ss_pred eCCCeEEEEEecCCCceeeeeeeec-------C---------cCCeEEEEEecCCCceEEEEEc-CCCc-----------
Q 001534 427 FSKHIVHLYTYNPTGELRQHLEIDA-------H---------VGGVNDIAFAHPNKQLCIVTCG-DDKM----------- 478 (1058)
Q Consensus 427 ~~d~~i~vwd~~~~~~~~~~~~~~~-------h---------~~~v~~~~fs~d~~~~~l~s~~-~d~~----------- 478 (1058)
. ++.|.+++..++...+. +..+ - -+.-..+.||||+++ |+... .+..
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEEEEEESS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEEeeccCC
Confidence 5 56799998877643322 1112 0 112357889999995 44322 2222
Q ss_pred ------------------------EEEEEcCCCceeE-Ee----eCCCCCeEEEEecccCCccEEEE--EeCCC---eEE
Q 001534 479 ------------------------IKVWDVVAGRKQY-TF----EGHEAPVYSVCPHHKESIQFIFS--TAIDG---KIK 524 (1058)
Q Consensus 479 ------------------------v~vwd~~~~~~~~-~l----~~~~~~v~~~~~~~~~~~~~l~s--~s~d~---~i~ 524 (1058)
+.|+|+.+++... .. ......+..+.|.+++ ..++. ...+. .+.
T Consensus 136 ~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~--~~l~~~~~nR~q~~~~l~ 213 (353)
T PF00930_consen 136 PDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG--KRLWVQWLNRDQNRLDLV 213 (353)
T ss_dssp STESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT--EEEEEEEEETTSTEEEEE
T ss_pred ccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCC--cEEEEEEcccCCCEEEEE
Confidence 2334444443211 10 1223345666676543 42322 23322 356
Q ss_pred EEeCCCCCceEEecC-CCCcE---EEEEEc-CCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCce-eEEEEcC
Q 001534 525 AWLYDYLGSRVDYDA-PGNWC---TMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-GVVQFDT 598 (1058)
Q Consensus 525 ~wd~~~~~~~~~~~~-~~~~v---~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-~~~~~~~ 598 (1058)
++|..++........ ....+ ....+. +++..++..+. .++-.+|++++...+... .+....- .| ..+.+++
T Consensus 214 ~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~-~lT~G~~-~V~~i~~~d~ 290 (353)
T PF00930_consen 214 LCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPR-QLTSGDW-EVTSILGWDE 290 (353)
T ss_dssp EEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEE-ESS-SSS--EEEEEEEEC
T ss_pred EEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEccccccee-ccccCce-eecccceEcC
Confidence 667766555443322 22222 245554 78877776665 566788999998877644 3333232 45 4577888
Q ss_pred CCCEEEE-EeC----CCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEEC
Q 001534 599 TRNRFLA-AGD----EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1058)
Q Consensus 599 ~~~~l~~-~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 652 (1058)
+++.++. +.. ...++.-++..+.....+....... ..+.|||++++++....
T Consensus 291 ~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~--~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 291 DNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH--YSASFSPDGKYYVDTYS 347 (353)
T ss_dssp TSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT--EEEEE-TTSSEEEEEEE
T ss_pred CCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc--eEEEECCCCCEEEEEEc
Confidence 8877665 443 2356666666344555555443321 58999999998876543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00048 Score=66.29 Aligned_cols=137 Identities=9% Similarity=-0.079 Sum_probs=90.7
Q ss_pred cEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCce
Q 001534 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1058)
Q Consensus 512 ~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1058)
.+++.|+..+.+.--|..++......... ..+.+-+.- -|++++.+.. .+.+++.+.++|.....+..... .-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~~-vk 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILET-VK 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehhh-hc
Confidence 56777777777777777776665543322 223222221 4667887775 67799999999988887766544 22
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEE
Q 001534 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1058)
Q Consensus 592 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 657 (1058)
......+++..+.+++.|++.+..|..+...+...+..+.. ..+-+..|-...|+.+...|.+.
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceEE
Confidence 23456788999999999999999999999988887765542 23344555333444444455443
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.5e-07 Score=89.82 Aligned_cols=164 Identities=13% Similarity=0.092 Sum_probs=123.7
Q ss_pred EEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCCCeE
Q 001534 353 DFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432 (1058)
Q Consensus 353 ~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i 432 (1058)
+||-+-.-+-++.+.+..|-+-|+++|-... +. .++.|.++.|...+.++..|..+|.|
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRngeI 276 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRNGEI 276 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccCCcE
Confidence 6664321122333457789999999886432 22 67789999999999999999999999
Q ss_pred EEEEecCCCc--eeeeeeeecCcCCeEEEEEec-CCCceEEEEEcCCCcEEEEEcCCCce---eEEeeCCCCCeEEEEec
Q 001534 433 HLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVYSVCPH 506 (1058)
Q Consensus 433 ~vwd~~~~~~--~~~~~~~~~h~~~v~~~~fs~-d~~~~~l~s~~~d~~v~vwd~~~~~~---~~~l~~~~~~v~~~~~~ 506 (1058)
..+|++.+.. ......+ -|.+.|+++.... +++ +|.+.+.+|.|++||.+.-++ +.++.||-+.-.-+-++
T Consensus 277 ~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~ 353 (425)
T KOG2695|consen 277 FVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAH 353 (425)
T ss_pred EEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccccc
Confidence 9999987521 1111122 4899999998877 455 788899999999999987666 88999998766666666
Q ss_pred ccCCccEEEEEeCCCeEEEEeCCCCCceEEecCC
Q 001534 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1058)
Q Consensus 507 ~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~ 540 (1058)
-++....+++++.|-..|+|.++.+....++...
T Consensus 354 v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 354 VKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 6666688999999999999999988777665543
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.7e-06 Score=87.50 Aligned_cols=258 Identities=13% Similarity=0.110 Sum_probs=172.0
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCE
Q 001534 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1058)
Q Consensus 343 ~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~ 422 (1058)
+.|.+.|+.+.-+... ++.+++.||.++.|.-..-..+. | ...+..|-+.|.+++.+-||.+
T Consensus 6 ymhrd~i~hv~~tka~--fiiqASlDGh~KFWkKs~isGvE---f-------------VKhFraHL~~I~sl~~S~dg~L 67 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKAK--FIIQASLDGHKKFWKKSRISGVE---F-------------VKHFRAHLGVILSLAVSYDGWL 67 (558)
T ss_pred hcccceeeeEeeehhh--eEEeeecchhhhhcCCCCcccee---e-------------hhhhHHHHHHHHhhhcccccee
Confidence 4477778777666543 78899999999999765311111 0 0115568899999999999999
Q ss_pred EEEEeC-CCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCc-eEEEEEcCCCcEEEEEcCCCc-ee-EEeeCCCC
Q 001534 423 LGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ-LCIVTCGDDKMIKVWDVVAGR-KQ-YTFEGHEA 498 (1058)
Q Consensus 423 l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~-~~l~s~~~d~~v~vwd~~~~~-~~-~~l~~~~~ 498 (1058)
+++.+. |..++++|+.+-..+.-. .+..-.+.+.. ..++.... .+-++.-.++.+.++|-.... +. ..-.-|..
T Consensus 68 ~~Sv~d~Dhs~KvfDvEn~Dminmi-KL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s 145 (558)
T KOG0882|consen 68 FRSVEDPDHSVKVFDVENFDMINMI-KLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS 145 (558)
T ss_pred EeeccCcccceeEEEeeccchhhhc-ccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC
Confidence 999877 999999999875443211 12222332322 22232211 133344567899999965443 23 33345999
Q ss_pred CeEEEEecccCCccEEEEEeCCCeEEEEeCCC----CC--ceE---------EecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001534 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY----LG--SRV---------DYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1058)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~----~~--~~~---------~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1058)
+|..+.+.+.. +.+++....|.|..|..+. .+ ... .+........++.|+|+|..+.+.+
T Consensus 146 PV~~i~y~qa~--Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~--- 220 (558)
T KOG0882|consen 146 PVKKIRYNQAG--DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN--- 220 (558)
T ss_pred ceEEEEeeccc--cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC---
Confidence 99999998655 6888998999999998763 11 111 1122344678999999999999876
Q ss_pred CCCceEEEeeCCCCceeEeecCC--------------------------------CCCceeEEEEcCCCCEEEEEeCCCe
Q 001534 564 EGESHLVEWNESEGAIKRTYSGF--------------------------------RKRSLGVVQFDTTRNRFLAAGDEFQ 611 (1058)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~--------------------------------~~~~v~~~~~~~~~~~l~~~~~dg~ 611 (1058)
.+..|++++.++|+.++.+... ....-..+.|...+++|+-++-=|
T Consensus 221 -~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g- 298 (558)
T KOG0882|consen 221 -PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG- 298 (558)
T ss_pred -cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-
Confidence 4888999999998876554321 111223466778888888877655
Q ss_pred EEEEECCCCceEEEEe
Q 001534 612 IKFWDMDNMNMLTTVD 627 (1058)
Q Consensus 612 i~iwd~~~~~~~~~~~ 627 (1058)
|++.++.++.....+.
T Consensus 299 ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 299 IKVINLDTNTVVRILG 314 (558)
T ss_pred EEEEEeecCeEEEEec
Confidence 7888888887776664
|
|
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-06 Score=87.55 Aligned_cols=171 Identities=15% Similarity=0.214 Sum_probs=119.1
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHhCCC--------ccHHHHHHHHhcCCHHHHHHHhcCCC-ccccccchhhHHHHH
Q 001534 6 RELVFLILQFLDEEKFKETVHKLEQESGFF--------FNMKHFEDQVQAGEWDEVERYLCGFT-KVEDNRYSMKIFFEI 76 (1058)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~G~w~~~~~~l~~~~-~~~~~~~~~~~~~~i 76 (1058)
.=+.|+|..||..+||.++|..|-++|.+. .++...++++++|+...|+.....-. .+. +....+-|.+
T Consensus 116 ~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~l 193 (389)
T KOG0396|consen 116 NKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhHH
Confidence 346899999999999999999999999975 23788999999999988887664311 111 1222477999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccccchhccCCCchhHHHHHHH--HHHhhcccC
Q 001534 77 RKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLV--ELKKLIEAN 154 (1058)
Q Consensus 77 ~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~--~l~~~~~~~ 154 (1058)
+.|.|+||+..+++.+|+.+.++++.|...-+.++++....++.++.......+... ....|=..+. .++++.+-
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sky~~l--~~~~rw~~l~~lF~s~a~~l- 270 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSKYLNL--LTADRWSVLADLFLSEALKL- 270 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCcccccCc--ccHHHHHHHHHHhhHHHHHH-
Confidence 999999999999999999999999999988788999999999998765443321111 1222323333 34444332
Q ss_pred ccccccCCCCCCchhHHHHHHHHHHHHHH-hhCCCC
Q 001534 155 PLFRDKLSFPSFKSSRLRTLINQSLNWQH-QLCKNP 189 (1058)
Q Consensus 155 ~~~~~~~~~~~~p~~rL~~ll~qa~~~q~-~~~~~~ 189 (1058)
..+|+-| +|..+|+--+..|. ..|...
T Consensus 271 ------~~i~~~~--~L~~~l~~GLsalKTp~c~~~ 298 (389)
T KOG0396|consen 271 ------FGIPINP--ALTIYLQAGLSALKTPRCLND 298 (389)
T ss_pred ------hCCCCCc--HHHHHHHhhhhhccccccccc
Confidence 1223222 47777765565554 235444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.1e-05 Score=87.82 Aligned_cols=279 Identities=11% Similarity=0.166 Sum_probs=161.2
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEE
Q 001534 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1058)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~ 425 (1058)
.+.|.++.|.-++.. ++.+..+|.|.+-|.++..... ...-...|.+++||||++.++.
T Consensus 68 d~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred CcceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEE
Confidence 358999999999874 5667889999999888765432 3345678999999999999999
Q ss_pred EeCCCeEEEEEecCCCceeeeeeee---cCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCce-eEEeeCCCCCeE
Q 001534 426 AFSKHIVHLYTYNPTGELRQHLEID---AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVY 501 (1058)
Q Consensus 426 ~~~d~~i~vwd~~~~~~~~~~~~~~---~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~-~~~l~~~~~~v~ 501 (1058)
.+..+++.+-+-. -..+... .+. ...+..-.+-|-....+ +-|+ .|....-+...... .... ...+.=+
T Consensus 127 iT~~~tll~mT~~-f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~-~~~~~~~ 199 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKD-FEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQI-EQDDHKT 199 (1265)
T ss_pred EeCCcEEEEEecc-ccchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccch-hhccCCc
Confidence 9998887765431 1111100 010 00112223444332221 1111 11111111100000 0000 1122234
Q ss_pred EEEecccCCccEEEEEe-----CCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCC
Q 001534 502 SVCPHHKESIQFIFSTA-----IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1058)
Q Consensus 502 ~~~~~~~~~~~~l~s~s-----~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1058)
+|+|- +||+++++.. ..+.|++||-+ +.....-....+.-.+++|-|.|..+++.....+ ++.|.++..+.
T Consensus 200 ~IsWR--gDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErNG 275 (1265)
T KOG1920|consen 200 SISWR--GDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERNG 275 (1265)
T ss_pred eEEEc--cCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecCC
Confidence 56666 6778888843 23789999876 3222222223344568999999999998875443 55788887542
Q ss_pred ---CceeEeecCCCCCceeEEEEcCCCCEEEE---EeCCCeEEEEECCCCce--EEEEecCCCCCCcceEEEeCC-CCEE
Q 001534 577 ---GAIKRTYSGFRKRSLGVVQFDTTRNRFLA---AGDEFQIKFWDMDNMNM--LTTVDADGGLPASPRLRFNKE-GSLL 647 (1058)
Q Consensus 577 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~-~~~l 647 (1058)
|+....+..... .+..++|+.++..|++ ......|++|-..+..- .+.+..... .-+.|+|. ...+
T Consensus 276 L~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~L 350 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKTL 350 (1265)
T ss_pred ccccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCceeE
Confidence 222222333232 4889999999998888 44555699999887543 233333322 23788883 3344
Q ss_pred EEEECCCcEEEEEC
Q 001534 648 AVTTSDNGIKILAN 661 (1058)
Q Consensus 648 ~~~~~dg~i~iw~~ 661 (1058)
.+-..+|...++++
T Consensus 351 ~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 351 HVLRESGQRLVRDF 364 (1265)
T ss_pred EEEecCCcEEEEEE
Confidence 44446666666554
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.5e-06 Score=78.22 Aligned_cols=95 Identities=21% Similarity=0.342 Sum_probs=73.1
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEccccee-EEEEeCCCCCeEEEEEcC-CCCE
Q 001534 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV-KTKLKGHQNRITGLAFSP-TLNA 938 (1058)
Q Consensus 861 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~-~~~l~~h~~~v~~l~~sp-d~~~ 938 (1058)
+..++|+++..+.+..-......|++++-+|....++++|++||.+.+||.+.... ...++.|..++..+-|+| ++..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 44666776543332222222345999999996677889999999999999988743 335789999999999999 5678
Q ss_pred EEEEeCCCcEEEEeCCC
Q 001534 939 LVSSGADAQLCMWSIDK 955 (1058)
Q Consensus 939 l~s~s~D~~i~iwd~~~ 955 (1058)
|+++++||.+.-||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999876
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.6e-05 Score=77.26 Aligned_cols=284 Identities=10% Similarity=0.106 Sum_probs=157.2
Q ss_pred ceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceEEEEecCCC-----
Q 001534 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----------DEFQIKFWDMDNMNMLTTVDADGG----- 631 (1058)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~----- 631 (1058)
++++++|..+++.+-.+.... ...+..+|+++.+++++ ..-.|.+||..+..+...+..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 469999999998877776543 33467899999988754 233699999999988887755432
Q ss_pred CCCcceEEEeCCCCEEEEEEC--CCcEEEEECCCCceeeecccCCcccccCCCCCCCCCCCccccccCCCcccccccCCC
Q 001534 632 LPASPRLRFNKEGSLLAVTTS--DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPT 709 (1058)
Q Consensus 632 ~~~v~~~~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1058)
......++++.||+++++... ...|.|.|+..+ +....+.-......
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~-kvv~ei~~PGC~~i------------------------------ 142 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK-KVVGEIDTPGCWLI------------------------------ 142 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT-EEEEEEEGTSEEEE------------------------------
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCC-ceeeeecCCCEEEE------------------------------
Confidence 123456788899998877643 457888888776 44444332211000
Q ss_pred CCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCcccee-EEecCCCcCcCceEEEEEccCCceEE
Q 001534 710 LERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK-ALRLPDSIAASKVVRLIYTNSGLSLL 788 (1058)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~ 788 (1058)
-...+..+...+.||.+....+.......... .+..+. ...-...-+++..+..++
T Consensus 143 ---------------------yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~--~dp~f~~~~~~~~~~~~~ 199 (342)
T PF06433_consen 143 ---------------------YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPD--DDPLFEHPAYSRDGGRLY 199 (342)
T ss_dssp ---------------------EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTT--TS-B-S--EEETTTTEEE
T ss_pred ---------------------EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCC--CcccccccceECCCCeEE
Confidence 00111223444555555555554322211111 111111 111222334444444455
Q ss_pred EeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe----CC---
Q 001534 789 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----GG--- 861 (1058)
Q Consensus 789 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s----dg--- 861 (1058)
-.+-+|.++--++......+ ..-|.+.+........ ..+.-.-+++++....|.+.- ++
T Consensus 200 F~Sy~G~v~~~dlsg~~~~~---------~~~~~~~t~~e~~~~W-----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHK 265 (342)
T PF06433_consen 200 FVSYEGNVYSADLSGDSAKF---------GKPWSLLTDAEKADGW-----RPGGWQLIAYHAASGRLYVLMHQGGEGSHK 265 (342)
T ss_dssp EEBTTSEEEEEEETTSSEEE---------EEEEESS-HHHHHTTE-----EE-SSS-EEEETTTTEEEEEEEE--TT-TT
T ss_pred EEecCCEEEEEeccCCcccc---------cCcccccCccccccCc-----CCcceeeeeeccccCeEEEEecCCCCCCcc
Confidence 56667777766654322110 1123322211111101 034455678887665554431 12
Q ss_pred ----eEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEE-eCCCeEEEEEcccceeEEEEeC
Q 001534 862 ----KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG-MEDSSVQIYNVRVDEVKTKLKG 922 (1058)
Q Consensus 862 ----~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg-~~dg~I~iwd~~~~~~~~~l~~ 922 (1058)
.|.+||+++++.+..+.. ...+.+|+.+.++..+|.+. ..++.+.+||..+|+.+.++..
T Consensus 266 dpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 266 DPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp S-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 399999999999998874 34578999999655566554 4678999999999999888764
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.8e-05 Score=87.72 Aligned_cols=225 Identities=15% Similarity=0.135 Sum_probs=133.8
Q ss_pred eEEEEECCCCCEEEEEeC----CCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCC
Q 001534 411 VNRCVWGPDGLMLGVAFS----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1058)
Q Consensus 411 v~~~~~spd~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~ 486 (1058)
-+-..|+|...++|+++- .|.|-||- ++|+.-+.. + ..-.+++++|+|..- +|+.|-.-|.+.+|...+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t---~P~hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-T---YPVHATSLCWHPEEF--VLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-c---cceehhhhccChHHH--HHhhccccceeEEEecCC
Confidence 345679999999988853 57888885 444432211 1 222467799999876 888998999999999777
Q ss_pred CceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecC--C--CC--cEEEEEEcCCCCEE---E
Q 001534 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--P--GN--WCTMMAYSADGTRL---F 557 (1058)
Q Consensus 487 ~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~--~--~~--~v~~~~~s~~~~~l---~ 557 (1058)
.+.-.....|..+|..+.|++ +|..++++..-|.+.+|..+..+....... | +. ...+...++++.-+ +
T Consensus 91 ~e~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred ceeeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence 666555667999999999995 558999999999999998875544432211 1 11 22344456664321 1
Q ss_pred EEecCCCCCceEE-EeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcc
Q 001534 558 SCGTSKEGESHLV-EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1058)
Q Consensus 558 ~~~~~~~~~~~i~-~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1058)
-++..+| ++.+- .++.+.....++. . -.-.|+|..++.++.+|+|+-.|- .|+.....+.... .
T Consensus 169 KaaVtgD-e~alD~~fnwk~~~a~rs~-~--------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~----v 233 (1416)
T KOG3617|consen 169 KAAVTGD-ESALDEPFNWKESLAERSD-E--------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE----V 233 (1416)
T ss_pred hhhccCc-hhhhcccccCccchhhccc-c--------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch----H
Confidence 1111111 11121 2221110000000 0 112578888999999999988774 3555555544322 3
Q ss_pred eEEEeCCCCEEEEEECCCcEEEE
Q 001534 637 RLRFNKEGSLLAVTTSDNGIKIL 659 (1058)
Q Consensus 637 ~~~~s~~~~~l~~~~~dg~i~iw 659 (1058)
.+-|.+....+.+...+-.+.++
T Consensus 234 QmLf~~~~eai~~i~e~lr~~l~ 256 (1416)
T KOG3617|consen 234 QMLFMGYCEAISIIIEFLRDCLI 256 (1416)
T ss_pred HHHHhcccceEEEEeeeceeeEE
Confidence 35566655555554444444433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0009 Score=78.49 Aligned_cols=256 Identities=14% Similarity=0.146 Sum_probs=141.4
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeee
Q 001534 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1058)
Q Consensus 590 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 669 (1058)
.|.++.|..+.+.++.+...|.|.+-|..+......-... ..|.+++||||++.++..+..+++.+-.-. - .++.
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~~-f-~~i~ 144 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTKD-F-EPIA 144 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEecc-c-cchh
Confidence 6888999999999999999999999988775543322222 358999999999999999998887765321 1 1110
Q ss_pred cccCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccc
Q 001534 670 MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKS 749 (1058)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 749 (1058)
.-.-+.. ..+.++.+.++..+.=.-
T Consensus 145 E~~L~~d-------------------------------------------------------~~~~sk~v~VGwGrkeTq 169 (1265)
T KOG1920|consen 145 EKPLDAD-------------------------------------------------------DERKSKFVNVGWGRKETQ 169 (1265)
T ss_pred ccccccc-------------------------------------------------------cccccccceeccccccee
Confidence 0000000 001111111111110000
Q ss_pred cccCCcCCccceeE---EecCCCcCcCceEEEEEccCCceEEEeec-----cceEEEEEcccCCCCCCCccccccccccc
Q 001534 750 WRIPDISDPSQIKA---LRLPDSIAASKVVRLIYTNSGLSLLALAS-----NAVHKLWKWQRTERNPSGKATANVAPQLW 821 (1058)
Q Consensus 750 w~~~~~~~~~~~~~---~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 821 (1058)
+.-..++....... -...+....+.=+.+.|..||+++++... ...+++||-.
T Consensus 170 frgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE------------------- 230 (1265)
T KOG1920|consen 170 FRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE------------------- 230 (1265)
T ss_pred eecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-------------------
Confidence 00000000000000 00000002223356899999999888432 2567777633
Q ss_pred CCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe----CCeEEEEECCCce---EEEEecCCCCCeEEEEEeCCCC
Q 001534 822 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----GGKVSLFNMMTFK---VMTMFMSPPPAATFLAFHPQDN 894 (1058)
Q Consensus 822 ~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s----dg~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~~~ 894 (1058)
|.+-....+ . .+--.+++|-|.|..+|+-. |+.|.+|.-+..+ ....+.....++..++|+. ++
T Consensus 231 ----g~Lns~se~---~-~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~s 301 (1265)
T KOG1920|consen 231 ----GALNSTSEP---V-EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NS 301 (1265)
T ss_pred ----chhhcccCc---c-cccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-CC
Confidence 221111011 1 33345899999999999873 5679999875322 1122222334489999999 89
Q ss_pred CEEEE---EeCCCeEEEEEcccce--eEEEEeCCCCCeEEEEEcCC
Q 001534 895 NIIAI---GMEDSSVQIYNVRVDE--VKTKLKGHQNRITGLAFSPT 935 (1058)
Q Consensus 895 ~~las---g~~dg~I~iwd~~~~~--~~~~l~~h~~~v~~l~~spd 935 (1058)
.+||+ ......|++|-+.+.. +.+.+.-..... +.|+|-
T Consensus 302 diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~ 345 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPV 345 (1265)
T ss_pred CceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCC
Confidence 99998 5555569999987653 222333222222 677773
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-06 Score=59.80 Aligned_cols=39 Identities=23% Similarity=0.494 Sum_probs=36.9
Q ss_pred ceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 001534 871 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1058)
Q Consensus 871 ~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd 910 (1058)
++++.++.+|...|++++|+| ++.+|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467889999999999999999 899999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00011 Score=80.78 Aligned_cols=301 Identities=12% Similarity=0.065 Sum_probs=153.4
Q ss_pred cCCCCEEEEEec-----CCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE
Q 001534 550 SADGTRLFSCGT-----SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1058)
Q Consensus 550 s~~~~~l~~~~~-----~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1058)
|||+++++.... ..+..+.+.++|+.+++....... ...+....|+|+|+.++... ++.|++++..++...+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence 578888776432 011245689999998776554443 22678899999999988875 5789999988774433
Q ss_pred EEecCCC----------------CCCcceEEEeCCCCEEEEEEC-CCcEEEEECC---CCce---eeecccCCcccccCC
Q 001534 625 TVDADGG----------------LPASPRLRFNKEGSLLAVTTS-DNGIKILANS---DGVR---LLRMLEGRAMDKNRC 681 (1058)
Q Consensus 625 ~~~~~~~----------------~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~---~~~~---~~~~~~~~~~~~~~~ 681 (1058)
+...+. ...-..+-||||+++||.... +..|+.+.+. .... ....+.-
T Consensus 78 -lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~Y-------- 148 (353)
T PF00930_consen 78 -LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRY-------- 148 (353)
T ss_dssp -SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE---------
T ss_pred -eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCccccccc--------
Confidence 322220 122357889999999988765 3444444331 1100 0000000
Q ss_pred CCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccce
Q 001534 682 PSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQI 761 (1058)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~ 761 (1058)
...|... ..-.+.++++.+....
T Consensus 149 ------------Pk~G~~n------------------------------------------p~v~l~v~~~~~~~~~--- 171 (353)
T PF00930_consen 149 ------------PKAGDPN------------------------------------------PRVSLFVVDLASGKTT--- 171 (353)
T ss_dssp -------------BTTS---------------------------------------------EEEEEEEESSSTCCC---
T ss_pred ------------CCCCCcC------------------------------------------CceEEEEEECCCCcEE---
Confidence 0000000 0013344555432221
Q ss_pred eEEecCC--CcCcCceEEEEEccCCceEEEeecc---ceEEEEEcccCCCCCCCcccccccccccCCCCCCccccc-cCC
Q 001534 762 KALRLPD--SIAASKVVRLIYTNSGLSLLALASN---AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND-INE 835 (1058)
Q Consensus 762 ~~~~~~~--~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 835 (1058)
.+..+. ......+..+.|+++++.++....+ ....+.. .|..++...... ...
T Consensus 172 -~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~--------------------~d~~tg~~~~~~~e~~ 230 (353)
T PF00930_consen 172 -ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVL--------------------CDASTGETRVVLEETS 230 (353)
T ss_dssp -EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEE--------------------EEECTTTCEEEEEEES
T ss_pred -EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEE--------------------EECCCCceeEEEEecC
Confidence 222221 1245678899999999855444332 2233222 122222211000 000
Q ss_pred CCCCCCCeeEEEEc-cCCcEEEEEe--CC--eEEEEECCCceEEEEecCCCCCeEE-EEEeCCCCCEEEEEeCCC----e
Q 001534 836 SKPTEESAACIALS-KNDSYVMSAS--GG--KVSLFNMMTFKVMTMFMSPPPAATF-LAFHPQDNNIIAIGMEDS----S 905 (1058)
Q Consensus 836 ~~h~~~~i~~~~~s-~d~~~la~~s--dg--~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~~~~~lasg~~dg----~ 905 (1058)
... -.......|. +++..++..+ +| .|.+++..++.. +.+....-.|+. +.++++++.+..+|..++ .
T Consensus 231 ~~W-v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~ 308 (353)
T PF00930_consen 231 DGW-VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERH 308 (353)
T ss_dssp SSS-SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBE
T ss_pred Ccc-eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceE
Confidence 001 1122355554 6666665554 55 477778776664 345444556744 778884455556666533 5
Q ss_pred EEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEE
Q 001534 906 VQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 942 (1058)
Q Consensus 906 I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~ 942 (1058)
++.-++.++..+..|....+.-..+.|||++++++-.
T Consensus 309 lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 309 LYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp EEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred EEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 6666666233345555444433689999999997743
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-06 Score=87.27 Aligned_cols=138 Identities=17% Similarity=0.230 Sum_probs=104.3
Q ss_pred eEeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC-
Q 001534 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP- 418 (1058)
Q Consensus 340 ~~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp- 418 (1058)
...+...+.|.++.|.-.+. ++..|..+|.|.+.|++.+..-.. |. ..---|.+.|+++..-.
T Consensus 246 ~qsf~sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~-----~~----------a~rlyh~Ssvtslq~Lq~ 309 (425)
T KOG2695|consen 246 QQSFQSKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNG-----WC----------AQRLYHDSSVTSLQILQF 309 (425)
T ss_pred ccccccchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCC-----cc----------eEEEEcCcchhhhhhhcc
Confidence 34445678999999999886 899999999999999987622110 00 00123889999999888
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEe--cCCCceEEEEEcCCCcEEEEEcCCCceeEEeeC
Q 001534 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA--HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1058)
Q Consensus 419 d~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs--~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~ 495 (1058)
++++|.+.+.+|+|++||++--++-.....+.||...-.-+-+. +... .+++++.|...+||.++.|..+.+++-
T Consensus 310 s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg--~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 310 SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG--SIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc--eEEEccCeeEEEEEecccCceeeccCC
Confidence 88999999999999999998766633444778886644444433 3333 788899999999999999999887764
|
|
| >PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.7e-06 Score=79.68 Aligned_cols=134 Identities=20% Similarity=0.224 Sum_probs=96.1
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCCCccccccchhhHHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001534 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQ 117 (1058)
Q Consensus 38 ~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~ 117 (1058)
...++++|++|+++.|+..+....+.-... ...+.|.|+.|+|+|||..++..+|+.+.|+.+.|......++++++..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR-NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 567899999999999999998653322111 1248899999999999999999999999999997664335678888888
Q ss_pred hhcccCccc--cchhccCCCchhHHHHHHHHHHhhcccCccccccCCCCCCc-hhHHHHHHHHHHHHH
Q 001534 118 LLTLDNFRQ--NEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFK-SSRLRTLINQSLNWQ 182 (1058)
Q Consensus 118 l~~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q 182 (1058)
++...+..+ ...+..+-+ ...|+.+.+.+.+.+-..- . +| .+.|..++++....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~~-~~~~~~la~~~~~~~l~~~------~---~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLS-PERREELAEEFNSAILKSY------G---LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHhC-hHHHHHHHHHHHHHHHHHh------C---cCCCCHHHHHHHHHHHHh
Confidence 888776544 222222222 3778888888887664421 1 33 456888887765443
|
RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.8e-05 Score=82.89 Aligned_cols=200 Identities=17% Similarity=0.215 Sum_probs=130.4
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCC-----cEEEEEcCCC--
Q 001534 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-----MIKVWDVVAG-- 487 (1058)
Q Consensus 415 ~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~-----~v~vwd~~~~-- 487 (1058)
+|++.+..++.|+.+|.|.+.+-.- .....++++...+...-+.-+++. +|++.+.|+ .++|||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~----~~~~~fqa~~~siv~~L~~~~~~~-~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF----QLIRGFQAYEQSIVQFLYILNKQN-FLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc----eeeehheecchhhhhHhhcccCce-EEEEEeecCCCCceEEEEecccccCC
Confidence 4788999999999999887776332 222356667666333334444544 677666655 5999998642
Q ss_pred ----cee--EEeeC-----CCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCC---CceEE-ecCCCCcEEEEEEcCC
Q 001534 488 ----RKQ--YTFEG-----HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRVD-YDAPGNWCTMMAYSAD 552 (1058)
Q Consensus 488 ----~~~--~~l~~-----~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~---~~~~~-~~~~~~~v~~~~~s~~ 552 (1058)
.++ +.+.. ...++.+++.+.+ -+.+++|-.+|.|..+.-+-. +.... ......+|+.+++..+
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~--l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSED--LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEcc--ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 233 12222 3457788888854 489999999999999954321 22222 2334569999999999
Q ss_pred CCE-EEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001534 553 GTR-LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1058)
Q Consensus 553 ~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1058)
++. +++++ ...|.+|.+....+....-.+++..++|.++++....+++++.. .+.+|+.....+-..+.
T Consensus 183 ~~s~lFv~T-----t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVAT-----TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEe-----cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeec
Confidence 988 33333 45589999884443444334455589999999877657766654 58999988655555554
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0013 Score=67.98 Aligned_cols=270 Identities=15% Similarity=0.190 Sum_probs=160.2
Q ss_pred CcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeC----------CCeEEEEEec
Q 001534 369 GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS----------KHIVHLYTYN 438 (1058)
Q Consensus 369 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~----------d~~i~vwd~~ 438 (1058)
+.+.|+|..+++.+-.. ..+-.-.+..|||++.+.+++. .-.|.+||..
T Consensus 17 ~rv~viD~d~~k~lGmi---------------------~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~ 75 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMI---------------------DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ 75 (342)
T ss_dssp EEEEEEETTTTEEEEEE---------------------EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred ceEEEEECCCCcEEEEe---------------------ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC
Confidence 47888888887754310 1223345778999998887532 3359999998
Q ss_pred CCCceeeeeeeecCc----CCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEE
Q 001534 439 PTGELRQHLEIDAHV----GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514 (1058)
Q Consensus 439 ~~~~~~~~~~~~~h~----~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l 514 (1058)
+-.....+....+|. .....++++.||+.+++.-.+--.+|.|-|+..++.+..+.. ..+..+- |.++ .-+
T Consensus 76 TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PGC~~iy--P~~~-~~F 150 (342)
T PF06433_consen 76 TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PGCWLIY--PSGN-RGF 150 (342)
T ss_dssp TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TSEEEEE--EEET-TEE
T ss_pred cCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CCEEEEE--ecCC-Cce
Confidence 865443221111111 123557899999976666667778999999999998887752 1222222 3333 458
Q ss_pred EEEeCCCeEEEEeCCCCCceEE-----ecCCCCc-EEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCcee--EeecCC
Q 001534 515 FSTAIDGKIKAWLYDYLGSRVD-----YDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK--RTYSGF 586 (1058)
Q Consensus 515 ~s~s~d~~i~~wd~~~~~~~~~-----~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~--~~~~~~ 586 (1058)
.+-|.||.+....++..+.... +.....+ +..-+++..+..++..+. +|.|+--|+...... ..+...
T Consensus 151 ~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy----~G~v~~~dlsg~~~~~~~~~~~~ 226 (342)
T PF06433_consen 151 SMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY----EGNVYSADLSGDSAKFGKPWSLL 226 (342)
T ss_dssp EEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBT----TSEEEEEEETTSSEEEEEEEESS
T ss_pred EEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEec----CCEEEEEeccCCcccccCccccc
Confidence 8999999999999885444331 1111222 223344444443333332 667887777654321 122111
Q ss_pred C---------CCceeEEEEcCCCCEEEEEe---CCC-------eEEEEECCCCceEEEEecCCCCCCcceEEEeCCCC-E
Q 001534 587 R---------KRSLGVVQFDTTRNRFLAAG---DEF-------QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS-L 646 (1058)
Q Consensus 587 ~---------~~~v~~~~~~~~~~~l~~~~---~dg-------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~ 646 (1058)
. .+....+++++..++|++.- .+| .|-++|+.+++.+..+.... ++.+++.+.+.+ +
T Consensus 227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~---~~~Si~Vsqd~~P~ 303 (342)
T PF06433_consen 227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH---PIDSIAVSQDDKPL 303 (342)
T ss_dssp -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE---EESEEEEESSSS-E
T ss_pred CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC---ccceEEEccCCCcE
Confidence 0 01234578887776666532 222 47778999999999998642 477999998665 6
Q ss_pred EEEEE-CCCcEEEEECCCCceeeeccc
Q 001534 647 LAVTT-SDNGIKILANSDGVRLLRMLE 672 (1058)
Q Consensus 647 l~~~~-~dg~i~iw~~~~~~~~~~~~~ 672 (1058)
|++.+ .++.+.+||..++ +.++.+.
T Consensus 304 L~~~~~~~~~l~v~D~~tG-k~~~~~~ 329 (342)
T PF06433_consen 304 LYALSAGDGTLDVYDAATG-KLVRSIE 329 (342)
T ss_dssp EEEEETTTTEEEEEETTT---EEEEE-
T ss_pred EEEEcCCCCeEEEEeCcCC-cEEeehh
Confidence 65554 4789999999999 5555554
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0018 Score=74.32 Aligned_cols=192 Identities=10% Similarity=0.080 Sum_probs=119.6
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEeeCCCC------CeE--EEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCC
Q 001534 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEA------PVY--SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1058)
Q Consensus 469 ~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~------~v~--~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~ 540 (1058)
.++.++.++.|.-.|..+|+.+.++..... .+. .++.. ++..++.++.++.|..+|.++++.+......
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~---~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW---DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc---cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 466677789999999999998877654322 000 01111 1257888889999999999999988876654
Q ss_pred CCc-----E-EEEEEcCCCCEEEEEecCCC-----CCceEEEeeCCCCceeEeecCCCCC-------------------c
Q 001534 541 GNW-----C-TMMAYSADGTRLFSCGTSKE-----GESHLVEWNESEGAIKRTYSGFRKR-------------------S 590 (1058)
Q Consensus 541 ~~~-----v-~~~~~s~~~~~l~~~~~~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~-------------------~ 590 (1058)
... + .+..+. +..++.++.+.+ .++.++.+|..+|+.+..+...... .
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 331 1 111222 244544432211 2578999999999988877553110 0
Q ss_pred e-eEEEEcCCCCEEEEEeCCC------------------eEEEEECCCCceEEEEecCCCCC----CcceEEEe----CC
Q 001534 591 L-GVVQFDTTRNRFLAAGDEF------------------QIKFWDMDNMNMLTTVDADGGLP----ASPRLRFN----KE 643 (1058)
Q Consensus 591 v-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~----~v~~~~~s----~~ 643 (1058)
+ ...++.+.+..++.++.++ .|.-+|..+|+.........+.. ......+. -+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1234555567788877665 79999999999998875432210 00111111 13
Q ss_pred CC---EEEEEECCCcEEEEECCCCc
Q 001534 644 GS---LLAVTTSDNGIKILANSDGV 665 (1058)
Q Consensus 644 ~~---~l~~~~~dg~i~iw~~~~~~ 665 (1058)
+. .++.++.+|.+..+|..+++
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~ 322 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGK 322 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCc
Confidence 33 57778888999999998884
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.6e-05 Score=76.60 Aligned_cols=244 Identities=12% Similarity=0.136 Sum_probs=138.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCC-EE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-ML 423 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~-~l 423 (1058)
+...|..++|||..+-|+..++.+..|+|.|+++...... +..| ..+.+++|..|.. +|
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeeccCCccee
Confidence 6788999999999876888899999999999999876653 2334 7899999999766 56
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEec------CCCceEEEEEcCCCcEEEEEcCC--CceeEEeeC
Q 001534 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH------PNKQLCIVTCGDDKMIKVWDVVA--GRKQYTFEG 495 (1058)
Q Consensus 424 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~------d~~~~~l~s~~~d~~v~vwd~~~--~~~~~~l~~ 495 (1058)
..|-..|.|.|||++..+.......-+-...+|..++.-+ .|. +++..+. .+..|++.- +.....++-
T Consensus 252 YaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt--~l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALT--VLQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred EEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeeh--hhhhhhhhccccCCCccccc
Confidence 6677899999999987654322111111233454444332 233 3433333 345565432 222222221
Q ss_pred -CCCCeEEEEecccCCccEEEEEeCCCe------EEE-EeCCCCCceEEe-cCC-CC------cEEEEEEcCCCCEEEEE
Q 001534 496 -HEAPVYSVCPHHKESIQFIFSTAIDGK------IKA-WLYDYLGSRVDY-DAP-GN------WCTMMAYSADGTRLFSC 559 (1058)
Q Consensus 496 -~~~~v~~~~~~~~~~~~~l~s~s~d~~------i~~-wd~~~~~~~~~~-~~~-~~------~v~~~~~s~~~~~l~~~ 559 (1058)
..+...++..++..+ +.+++.-.+.+ +-. -|..++..+..- ..+ +. .-..+.-.++.++++..
T Consensus 328 e~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~ 406 (463)
T KOG1645|consen 328 EPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV 406 (463)
T ss_pred CCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEe
Confidence 244555555555433 44444433211 000 111111111110 001 11 11122234566666655
Q ss_pred ecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEc-CCCCEEEEEeCCCeEEEEECC
Q 001534 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAGDEFQIKFWDMD 618 (1058)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~ 618 (1058)
+. ..+.+.+||..+++.+.++.... ++..++.. -++.-++..-.|..++||..+
T Consensus 407 gd---~tn~lil~D~~s~evvQ~l~~~e--pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 407 GD---STNELILQDPHSFEVVQTLALSE--PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cC---CcceeEEeccchhheeeecccCc--ceeecceeecCCcchhhheecceEEEEecC
Confidence 42 47789999999999999888763 56666543 234434444445567877644
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0025 Score=67.26 Aligned_cols=280 Identities=14% Similarity=0.131 Sum_probs=139.2
Q ss_pred EEEecCCCeEEEEEeCCC--cEEEEEccCccccccCcceeecccccccccccccccCCC-cCeEEEEECCCCCEEEEEeC
Q 001534 352 MDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGVAFS 428 (1058)
Q Consensus 352 ~~fspdg~~lla~g~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~spd~~~l~~~~~ 428 (1058)
=+|.+||+.||..+..|| .+.+-|+.+++..+ |+... .......++|+++.++-...
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~ 100 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKN 100 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEET
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEEC
Confidence 378899988888777665 57777788887654 33322 22334667898888877666
Q ss_pred CCeEEEEEecCCCceeeeeeeecCcCCeEEEEEe--cCCCceEEEEEc---C-------------------CCcEEEEEc
Q 001534 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA--HPNKQLCIVTCG---D-------------------DKMIKVWDV 484 (1058)
Q Consensus 429 d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs--~d~~~~~l~s~~---~-------------------d~~v~vwd~ 484 (1058)
...|+-.|+++.+... .+......+-...|. .|+. .++..- . ...|.--|+
T Consensus 101 ~~~l~~vdL~T~e~~~---vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 101 GRSLRRVDLDTLEERV---VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp TTEEEEEETTT--EEE---EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred CCeEEEEECCcCcEEE---EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 6788889998865432 333445555456664 3444 333221 1 123555677
Q ss_pred CCCceeEEeeCCCCCeEEEEecccCCccEEEEEeC---CCe-EEEEeCCCCCceE-EecC--CCCcEEEEEEcCCCCEEE
Q 001534 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGK-IKAWLYDYLGSRV-DYDA--PGNWCTMMAYSADGTRLF 557 (1058)
Q Consensus 485 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~---d~~-i~~wd~~~~~~~~-~~~~--~~~~v~~~~~s~~~~~l~ 557 (1058)
.+|+....+. ....+.-+.|+|..+ ..|+-|-+ +.. -|+|-+++.+... .+.. ....+..=-|.|||..+.
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred CCCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence 7777544443 455677788888654 44544432 221 3667665533322 2211 233556667999999887
Q ss_pred EEec-CCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCC----------------CeEEEEECCCC
Q 001534 558 SCGT-SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE----------------FQIKFWDMDNM 620 (1058)
Q Consensus 558 ~~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~ 620 (1058)
-.+. .+..+..|.-+|+.+++........ ....+-.++||++++-=|.| --|+++++..+
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~ 330 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAG 330 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTT
T ss_pred EEeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccC
Confidence 5443 2333557888888887654332221 23345567888877763332 14667888776
Q ss_pred ceEEEEecC-------C-CCCCcceEEEeCCCCEEEEEEC-CCcEEEEEC
Q 001534 621 NMLTTVDAD-------G-GLPASPRLRFNKEGSLLAVTTS-DNGIKILAN 661 (1058)
Q Consensus 621 ~~~~~~~~~-------~-~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~ 661 (1058)
+........ + ....-....|+|||++++-.|+ .|...||-+
T Consensus 331 ~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 331 RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 654322210 0 0011256899999998776654 677666644
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00018 Score=79.20 Aligned_cols=286 Identities=10% Similarity=0.063 Sum_probs=161.9
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~ 424 (1058)
+...|.--+++..++ +++.|+..|.+.+|+-.+++.+... ..+..+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhh
Confidence 344566667777777 7889999999999999888765421 223455677788999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeee---eecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCC----ceeEEeeCCC
Q 001534 425 VAFSKHIVHLYTYNPTGELRQHLE---IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHE 497 (1058)
Q Consensus 425 ~~~~d~~i~vwd~~~~~~~~~~~~---~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~----~~~~~l~~~~ 497 (1058)
.|+..|.|.|+-++.+........ -..|...|++++|++++. .+++|...|.|..-.+.+. ...+.+....
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 999999999998887433221111 123778899999999999 7999999999999887762 1122333345
Q ss_pred CCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecC-CCC-cEEEEEEcCC----CCEEEEEecCCCCCceEEE
Q 001534 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-PGN-WCTMMAYSAD----GTRLFSCGTSKEGESHLVE 571 (1058)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~-~~~-~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~ 571 (1058)
+.|..+... + .+|+.++.-.. .+++.+.......-+. ..+ .-...+|-|. .+-.+.|+. .-.++
T Consensus 171 s~IVQlD~~---q-~~LLVStl~r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaR-----PG~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYL---Q-SYLLVSTLTRC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCAR-----PGLRL 240 (726)
T ss_pred cceEEeecc---c-ceehHhhhhhh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEec-----CCCce
Confidence 666666554 2 23333332222 2333332221111010 111 1123333332 333344432 22677
Q ss_pred eeCC-CCceeEeecCCC----------------CC-------ceeEEEE----cCCCCEEEEEeCCCeEEEEECCCCceE
Q 001534 572 WNES-EGAIKRTYSGFR----------------KR-------SLGVVQF----DTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1058)
Q Consensus 572 wd~~-~~~~~~~~~~~~----------------~~-------~v~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1058)
|..+ .|+.+++..-.. .. .-..+.| .-.+..+++-++-| |+|+|+.+.+.+
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~ 319 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVY 319 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEE
Confidence 7654 244443321100 00 0000111 01122445544444 888888875554
Q ss_pred EEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCcee
Q 001534 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRL 667 (1058)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 667 (1058)
.-.... ..|. ..+..++-|++-..||.+++..+.+..+.
T Consensus 320 l~se~~---~DI~--dVs~~~neiFvL~~d~~l~~~sv~s~qr~ 358 (726)
T KOG3621|consen 320 LWSEGG---HDIL--DVSHCGNEIFVLNLDRGLKVESVASRQRK 358 (726)
T ss_pred EeecCC---Ccee--EEeecCceEEEEecCCceeEEEeehhHHH
Confidence 443222 1343 34455777777778888888877665443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.15 E-value=6e-05 Score=84.85 Aligned_cols=185 Identities=12% Similarity=0.119 Sum_probs=140.6
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEE
Q 001534 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1058)
Q Consensus 469 ~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1058)
.++-|+....+..+|+.+++..+......+.|.-++. ++..+.+|...|+|.+-|..+.+.+.++..|.+.+..+.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 5777887888889999998888777655656777764 447999999999999999999999999999999887665
Q ss_pred EcCCCCEEEEEecCCCC-----CceEEEeeCCCCceeEeecCCCCCceeEEEEcCC-CCEEEEEeCCCeEEEEECCC-Cc
Q 001534 549 YSADGTRLFSCGTSKEG-----ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT-RNRFLAAGDEFQIKFWDMDN-MN 621 (1058)
Q Consensus 549 ~s~~~~~l~~~~~~~~~-----~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~-~~ 621 (1058)
-.|+.|++||.+... |..|.+||++.-+.+..+..+.+. .-+.|+|. ...+++++..|...+-|..+ .+
T Consensus 225 --v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P--~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 225 --VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP--QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred --ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc--hhhhhcccccceEEEEecccceeeccccccCC
Confidence 468899999875432 567899999987766665555442 34667775 35677888899999988332 12
Q ss_pred e-EEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEEC
Q 001534 622 M-LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1058)
Q Consensus 622 ~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 661 (1058)
+ ......+.....+..+.++++|+.+|.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 2 222222222235889999999999999999999999983
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.015 Score=67.08 Aligned_cols=111 Identities=9% Similarity=0.000 Sum_probs=66.9
Q ss_pred cEEEEEeCCCeEEEEeCCCCCceEEecCCCC-cEE----------EEEEcCCCCEEEEEecCCCCCceEEEeeCCCCcee
Q 001534 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCT----------MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1058)
Q Consensus 512 ~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~-~v~----------~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1058)
..++.++.++.|.-.|..+++.+..+..... .+. .+++ .+..++.++ .++.+...|..+|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t----~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGT----LDARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEc----CCCEEEEEECCCCCEE
Confidence 4677777788888888888887776554221 111 1122 123455554 3778999999999998
Q ss_pred EeecCCCCCceeEEEEcC--CCCEEEEEe------CCCeEEEEECCCCceEEEEec
Q 001534 581 RTYSGFRKRSLGVVQFDT--TRNRFLAAG------DEFQIKFWDMDNMNMLTTVDA 628 (1058)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~--~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~ 628 (1058)
..........-..+.-+| .+..++++. .+|.|..+|.++|+.+..+..
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 876532110000111111 123455543 268999999999999887644
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00039 Score=78.24 Aligned_cols=204 Identities=11% Similarity=0.102 Sum_probs=129.6
Q ss_pred EEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcC-eEEEEECCCCCEEEEEeCCC-
Q 001534 353 DFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS-VNRCVWGPDGLMLGVAFSKH- 430 (1058)
Q Consensus 353 ~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~spd~~~l~~~~~d~- 430 (1058)
+|++.+. .+|.|+.+|.|.+.+-.-. .+.. +..+... |..+-...+..+|++.+.|+
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~s~~-~~~~-------------------fqa~~~siv~~L~~~~~~~~L~sv~Ed~~ 88 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNSSFQ-LIRG-------------------FQAYEQSIVQFLYILNKQNFLFSVGEDEQ 88 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEecccce-eeeh-------------------heecchhhhhHhhcccCceEEEEEeecCC
Confidence 4677776 7899999998877764321 1111 3345555 33333333445777765544
Q ss_pred ----eEEEEEecCCC------ceeeeeeee----cCcCCeEEEEEecCCCceEEEEEcCCCcEEEEE--cCC--CceeEE
Q 001534 431 ----IVHLYTYNPTG------ELRQHLEID----AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD--VVA--GRKQYT 492 (1058)
Q Consensus 431 ----~i~vwd~~~~~------~~~~~~~~~----~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd--~~~--~~~~~~ 492 (1058)
.++||+++.-+ ++.....+. ....++.+++.+.+-+ .+|.|-.+|.|..+. +.. |....-
T Consensus 89 ~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 89 GNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred CCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEEcCcchhccccceee
Confidence 59999986531 121111111 1356789999999877 799999999999883 322 222222
Q ss_pred eeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCc-eEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEE
Q 001534 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1058)
Q Consensus 493 l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1058)
......+|+.+++..++ ..++....-..|.+|.+....+ ...+..++....|.++++....+++++ ...+.+
T Consensus 167 ~~~~~~pITgL~~~~d~--~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-----~e~l~f 239 (933)
T KOG2114|consen 167 SHRGKEPITGLALRSDG--KSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-----SEFLYF 239 (933)
T ss_pred eccCCCCceeeEEecCC--ceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-----CceEEE
Confidence 22346799999998544 4434444456789999885553 334777888999999988776566664 556999
Q ss_pred eeCCCCceeEeec-CC
Q 001534 572 WNESEGAIKRTYS-GF 586 (1058)
Q Consensus 572 wd~~~~~~~~~~~-~~ 586 (1058)
|+.....+...+. ++
T Consensus 240 Y~sd~~~~cfaf~~g~ 255 (933)
T KOG2114|consen 240 YDSDGRGPCFAFEVGE 255 (933)
T ss_pred EcCCCcceeeeecCCC
Confidence 9988666666666 44
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.5e-06 Score=50.21 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHh
Q 001534 6 RELVFLILQFLDEEKFKETVHKLEQES 32 (1058)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Es 32 (1058)
+++.+||++||.++||.+||++|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999997
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00026 Score=77.05 Aligned_cols=113 Identities=18% Similarity=0.249 Sum_probs=83.4
Q ss_pred CCCeeEEEEccC-CcEEEEE----e-CCe----EEEEECCCceEEEE---ecCCCCCeEEEEEeCCCCCEEEEEeCCCeE
Q 001534 840 EESAACIALSKN-DSYVMSA----S-GGK----VSLFNMMTFKVMTM---FMSPPPAATFLAFHPQDNNIIAIGMEDSSV 906 (1058)
Q Consensus 840 ~~~i~~~~~s~d-~~~la~~----s-dg~----i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~~~~~lasg~~dg~I 906 (1058)
+....++.||.. ...+.+. + +|. -.+|+....+..+. --.....|.+++++| +...++.|+.||.|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 455678888873 3334333 2 343 46788766543322 123667899999999 88999999999999
Q ss_pred EEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001534 907 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1058)
Q Consensus 907 ~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~ 955 (1058)
.+||...+.. .+..+.-.++.++|+|+|.++++|+..|.+.+||+.-
T Consensus 284 iLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 284 ILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 9999877632 2333456688999999999999999999999999864
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00043 Score=75.38 Aligned_cols=139 Identities=12% Similarity=0.105 Sum_probs=95.5
Q ss_pred cceecCCccccceeEeecCCCCeeEEEEecCCCeEEEE-E---eCCCc----EEEEEccCccccccCcceeecccccccc
Q 001534 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLV-G---TNVGD----ISLWEVGSRERLAHKPFKVWDISAASMP 398 (1058)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~lla~-g---~~dg~----v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 398 (1058)
+.++......-+++..+..+....++.||-...+.+.+ . +.+|. -.+|++..++... .
T Consensus 186 l~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqr-v------------- 251 (545)
T PF11768_consen 186 LHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQR-V------------- 251 (545)
T ss_pred EEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeE-E-------------
Confidence 44444444455666666666777889999744433333 2 23443 3456665443221 0
Q ss_pred cccccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCc
Q 001534 399 LQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1058)
Q Consensus 399 ~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~ 478 (1058)
...--...+.|.|++++|+.+.|+.|+.||+|.+||...+... +..+.-..+.++|+|+|. ++++|+..|.
T Consensus 252 --svtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGe 322 (545)
T PF11768_consen 252 --SVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGE 322 (545)
T ss_pred --EEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCce
Confidence 1111246778999999999999999999999999998875322 223445688999999999 8999999999
Q ss_pred EEEEEcCCCc
Q 001534 479 IKVWDVVAGR 488 (1058)
Q Consensus 479 v~vwd~~~~~ 488 (1058)
+.+||+.-..
T Consensus 323 lQ~FD~ALsp 332 (545)
T PF11768_consen 323 LQCFDMALSP 332 (545)
T ss_pred EEEEEeecCc
Confidence 9999987543
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0017 Score=70.94 Aligned_cols=276 Identities=11% Similarity=0.079 Sum_probs=143.8
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEe
Q 001534 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1058)
Q Consensus 348 ~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~ 427 (1058)
.|+++.|+++... |++|...|.|.||.+..++..... ...+-....+.+- ..
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~---------------------~~~~~~~~~~~~~------~~ 54 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNR---------------------EQPPDLDYNFRRF------SL 54 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE---------------------------------------S--------G
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCcc---------------------CCCcccCcccccc------cc
Confidence 6899999999764 677899999999999876532100 0000111111110 00
Q ss_pred CCCeEEEEEecC---C---CceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEe--eC----
Q 001534 428 SKHIVHLYTYNP---T---GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--EG---- 495 (1058)
Q Consensus 428 ~d~~i~vwd~~~---~---~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l--~~---- 495 (1058)
.++.-.+-|+.. . +.+.....+....++|++++.|.-| +++.|..+|.+.|.|++....++.- ..
T Consensus 55 ~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~ 131 (395)
T PF08596_consen 55 NNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLS 131 (395)
T ss_dssp GGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-
T ss_pred cCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccc
Confidence 111122233322 1 1233444455668899999998666 7999999999999999887777642 22
Q ss_pred --CCCCeEEEEec---ccCCc---cEEEEEeCCCeEEEEeCCC-CCceE------EecCCCCcEEEEE-EcCC-------
Q 001534 496 --HEAPVYSVCPH---HKESI---QFIFSTAIDGKIKAWLYDY-LGSRV------DYDAPGNWCTMMA-YSAD------- 552 (1058)
Q Consensus 496 --~~~~v~~~~~~---~~~~~---~~l~s~s~d~~i~~wd~~~-~~~~~------~~~~~~~~v~~~~-~s~~------- 552 (1058)
....|+++.|. ...|+ -.+++|...|.+.+|.+.. ....+ ....+.+.+..+. ++.+
T Consensus 132 ~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~A 211 (395)
T PF08596_consen 132 KSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALA 211 (395)
T ss_dssp SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-
T ss_pred cccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccC
Confidence 23467788775 22333 5788999999999998752 22211 1113444554444 3221
Q ss_pred --------------CCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEc-----CCCCEEEEEeCCCeEE
Q 001534 553 --------------GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD-----TTRNRFLAAGDEFQIK 613 (1058)
Q Consensus 553 --------------~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~ 613 (1058)
..++++++ +..++++...+.+..++...... ....+++- ..+..|++-..+|.++
T Consensus 212 t~~~~~~l~~g~~i~g~vVvvS-----e~~irv~~~~~~k~~~K~~~~~~-~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~ 285 (395)
T PF08596_consen 212 TISAMQGLSKGISIPGYVVVVS-----ESDIRVFKPPKSKGAHKSFDDPF-LCSSASVVPTISRNGGYCLVCLFNNGSIR 285 (395)
T ss_dssp BHHHHHGGGGT----EEEEEE------SSEEEEE-TT---EEEEE-SS-E-EEEEEEEEEEE-EEEEEEEEEEETTSEEE
T ss_pred chhHhhccccCCCcCcEEEEEc-----ccceEEEeCCCCcccceeecccc-ccceEEEEeecccCCceEEEEEECCCcEE
Confidence 11445554 55699999888776665542211 23334442 3456778888999999
Q ss_pred EEECCCCceEEEEecCCC--CCCcceEEEeCCCCEEEEEECCCcEEEEEC
Q 001534 614 FWDMDNMNMLTTVDADGG--LPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1058)
Q Consensus 614 iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 661 (1058)
++.+..-+.+..+..... ...+....++++|..++-.+.. .+.++.+
T Consensus 286 i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 286 IYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp EEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS-EEEEEEE
T ss_pred EEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCcc-cEEEEEE
Confidence 999999999988876421 1235567788888876665443 4444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0014 Score=72.73 Aligned_cols=224 Identities=11% Similarity=0.051 Sum_probs=118.9
Q ss_pred CCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001534 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1058)
Q Consensus 406 ~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~ 485 (1058)
...-....+.++|+|++++++ .||.-.|+..... +. ...+.-...+|.+.++ +|+-...++|.++.--
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYKNF 97 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEETT
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEEcC
Confidence 345557899999999999994 6777777773332 21 1234456788998654 6767768899997322
Q ss_pred CCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001534 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1058)
Q Consensus 486 ~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1058)
+.+....+.. ...+..+-. |.+|...+. +.|.+||+.+.+.+..+... .|..+.|+++|++++..+
T Consensus 98 ~~~~~k~i~~-~~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----- 163 (443)
T PF04053_consen 98 KNEVVKSIKL-PFSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----- 163 (443)
T ss_dssp EE-TT------SS-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE------
T ss_pred ccccceEEcC-CcccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe-----
Confidence 3333223332 123444431 455655554 48999999999888888754 489999999999999886
Q ss_pred CceEEEeeCCCC-----------ceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCC
Q 001534 566 ESHLVEWNESEG-----------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1058)
Q Consensus 566 ~~~i~~wd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1058)
+..+++++.... .....+.... ..|.+.+|..+ .++-.+.. .++- +-.|+.-..-... .+
T Consensus 164 ~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~-~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld---~~ 234 (443)
T PF04053_consen 164 KDSIYILKYNLEAVAAIPEEGVEDAFELIHEIS-ERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD---KP 234 (443)
T ss_dssp S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S---S-
T ss_pred CCeEEEEEecchhcccccccCchhceEEEEEec-ceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC---Cc
Confidence 445777765433 0122222112 26888889765 34333333 6665 3334332222221 24
Q ss_pred cceEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001534 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
+.-+.+.++.+.+.....|+.+..+.+...
T Consensus 235 ~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 235 LYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp -EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred eEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 667788887788999999999998877543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00013 Score=82.23 Aligned_cols=182 Identities=10% Similarity=0.102 Sum_probs=128.3
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCC
Q 001534 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1058)
Q Consensus 419 d~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~ 498 (1058)
++..++-|+-...+..+|+.+.+..+ ...-..+.|+-|.. +++ ++.+|...|+|.+-|..+.+.++++..|++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r---~~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETR---TTNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeee---eeeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 45567777777788899998876554 22222334555554 456 799999999999999999999999999999
Q ss_pred CeEEEEecccCCccEEEEEeC---------CCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCC-CEEEEEecCCCCCce
Q 001534 499 PVYSVCPHHKESIQFIFSTAI---------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESH 568 (1058)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~---------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~ 568 (1058)
.|..+... |+.|++++. |.-|+|||++..+.+..+..+.++ .-+.|.|.- ..+++++. .|.
T Consensus 219 siSDfDv~----GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~----sGq 289 (1118)
T KOG1275|consen 219 SISDFDVQ----GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQ----SGQ 289 (1118)
T ss_pred ceeeeecc----CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEec----ccc
Confidence 99988764 368888875 556899999987776655544433 345566653 34444443 566
Q ss_pred EEEeeCCC-Cce-eEeecCC-CCCceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 001534 569 LVEWNESE-GAI-KRTYSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1058)
Q Consensus 569 i~~wd~~~-~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 616 (1058)
..+-|..+ +.+ ...+..+ .+..+..++++++++.++.|..+|.|.+|.
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 77777322 111 2222222 222488999999999999999999999997
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0067 Score=68.73 Aligned_cols=251 Identities=12% Similarity=0.099 Sum_probs=138.3
Q ss_pred CeeEEEEecCCCeEEEEEeCCC----cEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEE
Q 001534 348 NVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1058)
Q Consensus 348 ~V~~~~fspdg~~lla~g~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l 423 (1058)
.+...++||||++++++-+..| .+++.|+.+|+.+.. . +. ......+.|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~-----------------i~--~~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G-----------------IE--NPKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E-----------------EE--EEESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c-----------------cc--ccccceEEEeCCCCEE
Confidence 3446789999996665545555 599999999976542 1 11 1112249999999987
Q ss_pred EEEeCCC-----------eEEEEEecCCCceeeeeeeecCcCC--eEEEEEecCCCceEEEEEcCC---CcEEEEEcCCC
Q 001534 424 GVAFSKH-----------IVHLYTYNPTGELRQHLEIDAHVGG--VNDIAFAHPNKQLCIVTCGDD---KMIKVWDVVAG 487 (1058)
Q Consensus 424 ~~~~~d~-----------~i~vwd~~~~~~~~~~~~~~~h~~~--v~~~~fs~d~~~~~l~s~~~d---~~v~vwd~~~~ 487 (1058)
+....+. .|+.|.+.++..-. ...+...... ...+..++|++.+ ++..... ..+.+.|+..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l-~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYL-FISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEE-EEEEESSSSEEEEEEEECCCT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEE-EEEEEccccCCeEEEEecccc
Confidence 6664332 37777776653221 1233333332 6788999999963 3333322 35777788764
Q ss_pred ----ceeEEeeCCCCCe-EEEEecccCCccEEEEEe---CCCeEEEEeCCCCCc---eEEecCCCCcEEEEEEcCCCCEE
Q 001534 488 ----RKQYTFEGHEAPV-YSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRL 556 (1058)
Q Consensus 488 ----~~~~~l~~~~~~v-~~~~~~~~~~~~~l~s~s---~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l 556 (1058)
.....+......+ ..+... + +.+++... ..+.|...++..... ...+..+...+.-..+...+.+|
T Consensus 263 ~~~~~~~~~l~~~~~~~~~~v~~~--~-~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L 339 (414)
T PF02897_consen 263 GSPDAKPKLLSPREDGVEYYVDHH--G-DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYL 339 (414)
T ss_dssp TTSS-SEEEEEESSSS-EEEEEEE--T-TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEE
T ss_pred CCCcCCcEEEeCCCCceEEEEEcc--C-CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEE
Confidence 2333333333333 333332 2 23333332 246677778877663 22444444433333344456666
Q ss_pred EEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEE--Ee--CCCeEEEEECCCCceEE
Q 001534 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA--AG--DEFQIKFWDMDNMNMLT 624 (1058)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~--~dg~i~iwd~~~~~~~~ 624 (1058)
+.... .+....|+++++..+...........+.+..+...++++.+.. .+ .-++++.||+.+++...
T Consensus 340 vl~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 340 VLSYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 65543 2456789999998455555555544445666666666665443 22 34678888998877543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00031 Score=78.46 Aligned_cols=182 Identities=13% Similarity=0.118 Sum_probs=125.3
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEE
Q 001534 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1058)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~ 425 (1058)
.+.++|++++. .+++-|+.+|.|++.+.+... .. ...|+.. .-+|.++++
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~~~-~~--------------------~~~~s~~------~~~Gey~as 88 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQGNP-KT--------------------NFDHSSS------ILEGEYVAS 88 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecCCcc-cc--------------------ccccccc------ccCCceEEE
Confidence 35788888874 378999999999999988643 11 1224333 568999999
Q ss_pred EeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecC-----CCceEEEEEcCCCcEEEEEcC--CCceeEEeeCCCC
Q 001534 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP-----NKQLCIVTCGDDKMIKVWDVV--AGRKQYTFEGHEA 498 (1058)
Q Consensus 426 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d-----~~~~~l~s~~~d~~v~vwd~~--~~~~~~~l~~~~~ 498 (1058)
|+.||+|.|-.+-+.+... .+ ....++.+++++|+ .+ .+++|+.-| +.++.-. ..+.-..+....+
T Consensus 89 CS~DGkv~I~sl~~~~~~~---~~-df~rpiksial~Pd~~~~~sk--~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG 161 (846)
T KOG2066|consen 89 CSDDGKVVIGSLFTDDEIT---QY-DFKRPIKSIALHPDFSRQQSK--QFVSGGMAG-LVLSERNWLGNKDSVVLSEGEG 161 (846)
T ss_pred ecCCCcEEEeeccCCccce---eE-ecCCcceeEEeccchhhhhhh--heeecCcce-EEEehhhhhcCccceeeecCcc
Confidence 9999999999998876554 22 24568999999998 34 689999888 7776421 1111124556778
Q ss_pred CeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCc------EEEEEEcCCCCEEEEEecCCCCCceEEEe
Q 001534 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW------CTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1058)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~------v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1058)
+|.++.|.. ++++-++ |--|++||..+.+.+..+...... -..+.|.++.+.++.-+ .+|++.
T Consensus 162 ~I~~i~W~g----~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~------d~v~i~ 230 (846)
T KOG2066|consen 162 PIHSIKWRG----NLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG------DSVKIC 230 (846)
T ss_pred ceEEEEecC----cEEEEec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC------CeEEEE
Confidence 999999972 4565555 455799999887776655544332 34677877766665433 237777
Q ss_pred eCC
Q 001534 573 NES 575 (1058)
Q Consensus 573 d~~ 575 (1058)
.++
T Consensus 231 ~I~ 233 (846)
T KOG2066|consen 231 SIK 233 (846)
T ss_pred EEe
Confidence 666
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0057 Score=70.30 Aligned_cols=244 Identities=11% Similarity=0.071 Sum_probs=140.7
Q ss_pred EEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC--CCCEEEEEe---------CC
Q 001534 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLGVAF---------SK 429 (1058)
Q Consensus 361 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--d~~~l~~~~---------~d 429 (1058)
.++.++.+|.|.-+|.++|+.+= ..... .+...-..+.-+| .+..++.++ .+
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~~W-------~~~~~----------~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~ 174 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQVW-------KFGNN----------DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVR 174 (488)
T ss_pred eEEEecCCCeEEEEECCCCCEee-------eecCC----------CCcCcceEecCCCEEECCEEEEeccccccccCCCC
Confidence 45667789999999999998653 22111 1100000011112 123444443 36
Q ss_pred CeEEEEEecCCCceeeeeeeec----------------Cc-CCe-EEEEEecCCCceEEEEEcCCC--------------
Q 001534 430 HIVHLYTYNPTGELRQHLEIDA----------------HV-GGV-NDIAFAHPNKQLCIVTCGDDK-------------- 477 (1058)
Q Consensus 430 ~~i~vwd~~~~~~~~~~~~~~~----------------h~-~~v-~~~~fs~d~~~~~l~s~~~d~-------------- 477 (1058)
+.+.-+|..+|+.+-....... +. ..+ ...++.+.+. .++.++.++
T Consensus 175 g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g--~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 175 GALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN--LVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred cEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC--EEEEECCCCCCCccCCccCCCCC
Confidence 7888889988876543221100 00 011 1234444455 466665554
Q ss_pred ----cEEEEEcCCCceeEEeeCCCCCeE------EEEecc--cCCc---cEEEEEeCCCeEEEEeCCCCCceEEecCCCC
Q 001534 478 ----MIKVWDVVAGRKQYTFEGHEAPVY------SVCPHH--KESI---QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN 542 (1058)
Q Consensus 478 ----~v~vwd~~~~~~~~~l~~~~~~v~------~~~~~~--~~~~---~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~ 542 (1058)
.|.-.|.++|+.+..++.-..... ...+.. .-++ ..++.++.+|.+...|.++++.+.......
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~- 331 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE- 331 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec-
Confidence 799999999999887653111111 001110 0122 368888899999999999998887654321
Q ss_pred cEEEEEEcCCCCEEEEEecC--------------CCCCceEEEeeCCCCceeEeecCCCC-------Cce--eEEEEcCC
Q 001534 543 WCTMMAYSADGTRLFSCGTS--------------KEGESHLVEWNESEGAIKRTYSGFRK-------RSL--GVVQFDTT 599 (1058)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~--------------~~~~~~i~~wd~~~~~~~~~~~~~~~-------~~v--~~~~~~~~ 599 (1058)
..++.+| ..++..... ...++.+.-.|..+|+.+.+...... ... ..+. ..
T Consensus 332 --~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~ 405 (488)
T cd00216 332 --QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TA 405 (488)
T ss_pred --cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ec
Confidence 1233344 333332110 12357799999999998887664311 011 1122 24
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEecCC
Q 001534 600 RNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630 (1058)
Q Consensus 600 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (1058)
+..+++++.||.++.+|..+|+.+...+...
T Consensus 406 g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~ 436 (488)
T cd00216 406 GNLVFAGAADGYFRAFDATTGKELWKFRTPS 436 (488)
T ss_pred CCeEEEECCCCeEEEEECCCCceeeEEECCC
Confidence 5788889999999999999999999887643
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0011 Score=73.21 Aligned_cols=105 Identities=12% Similarity=0.064 Sum_probs=68.3
Q ss_pred CceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCC
Q 001534 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1058)
Q Consensus 773 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~ 852 (1058)
+.+....++++..++++++..|.|.++-+.. ...++-.. .+..-+ .| ...|++++||+|+
T Consensus 77 ~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~~----------------~t~~d~--~~-~~rVTal~Ws~~~ 136 (726)
T KOG3621|consen 77 GITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLDY----------------VTPCDK--SH-KCRVTALEWSKNG 136 (726)
T ss_pred ceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCccee----------------eccccc--cC-CceEEEEEecccc
Confidence 3456677888888889999999999886654 11111111 111011 16 8899999999999
Q ss_pred cEEEEEe-CCeEEEEECCCce----EEEEecCCCCCeEEEEEeCCCCCEEEE
Q 001534 853 SYVMSAS-GGKVSLFNMMTFK----VMTMFMSPPPAATFLAFHPQDNNIIAI 899 (1058)
Q Consensus 853 ~~la~~s-dg~i~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~~~~~las 899 (1058)
+.+.+|. .|+|.+-.+.+.. ....+-...+.|-.+.+.. +.+|++
T Consensus 137 ~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVS 186 (726)
T KOG3621|consen 137 MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVS 186 (726)
T ss_pred cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHh
Confidence 9999998 7999888887621 1112223456777777764 444443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0018 Score=71.48 Aligned_cols=196 Identities=11% Similarity=0.097 Sum_probs=120.0
Q ss_pred eecCcCCeEEEEEecCCCceEEEEEcCC--CcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeE--E
Q 001534 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI--K 524 (1058)
Q Consensus 449 ~~~h~~~v~~~~fs~d~~~~~l~s~~~d--~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i--~ 524 (1058)
+..-...+..-+|+|+++.+..++-... ..+.++|+.+++....+. ..+.-....|+|++. .++++...||.. .
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~-~l~f~~~rdg~~~iy 265 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS-KLAFSSSRDGSPDIY 265 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC-EEEEEECCCCCccEE
Confidence 3334456778899999996433333333 359999999887655443 223333446776542 455666677764 4
Q ss_pred EEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEE
Q 001534 525 AWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL 604 (1058)
Q Consensus 525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 604 (1058)
+.|+...... .+....+.-..-.|+|||++++..+ +..+...|+++|...+.. ..+..... .-..-.++|+|++++
T Consensus 266 ~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~-~riT~~~~-~~~~p~~SpdG~~i~ 341 (425)
T COG0823 266 LMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQV-TRLTFSGG-GNSNPVWSPDGDKIV 341 (425)
T ss_pred EEcCCCCcce-ecccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCce-eEeeccCC-CCcCccCCCCCCEEE
Confidence 5566655532 2444344444778999999999876 444566788889886655 33332222 112567999999998
Q ss_pred EEeC-CCe--EEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECC
Q 001534 605 AAGD-EFQ--IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1058)
Q Consensus 605 ~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1058)
..+. +|. |.+.|+.++.....+.... ....-.|.+++..+...+..
T Consensus 342 ~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 342 FESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEeccC
Confidence 8663 344 6777777666544443322 23345677888777665543
|
|
| >smart00668 CTLH C-terminal to LisH motif | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.4e-06 Score=61.78 Aligned_cols=52 Identities=33% Similarity=0.540 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCCCccccccchhhHHHHHHHHHHHHHHccCCH
Q 001534 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDR 90 (1058)
Q Consensus 38 ~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~ 90 (1058)
+..++++|+.|+|+.|++.+...........+ .+.|.|++|+|+||+..++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 67899999999999999999877543322222 49999999999999998764
|
Alpha-helical motif of unknown function. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.078 Score=61.65 Aligned_cols=574 Identities=13% Similarity=0.112 Sum_probs=270.1
Q ss_pred cceecCCccccceeEeecCCCCeeEEE-EecCC--CeEEEEEeCCCcEEE--EEccCccccccCcceeeccccccccccc
Q 001534 327 PNVYSQDDLTKTVVRTLNQGSNVMSMD-FHPQQ--QTILLVGTNVGDISL--WEVGSRERLAHKPFKVWDISAASMPLQN 401 (1058)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~h~~~V~~~~-fspdg--~~lla~g~~dg~v~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1058)
+.++..+..--+.+....--+.|..++ |-|-| +.+|.+++.+..+.+ ||-...+.... .. -+.. .
T Consensus 38 lei~~~~~~GLq~i~sv~ifg~I~~i~~fRp~g~~kD~LfV~t~~~~~~iL~~d~~~~~vv~~-a~--~~v~-------d 107 (1096)
T KOG1897|consen 38 LEILLVEPNGLQPITSVPIFGTIATIALFRPPGSDKDYLFVATDSYRYFILEWDEESIQVVTR-AH--GDVS-------D 107 (1096)
T ss_pred EEEEeeccccceeeEeeccceeEEEEEeecCCCCCcceEEEEECcceEEEEEEccccceEEEE-ec--cccc-------c
Confidence 333333333334445555445565554 55644 346777777766554 55532222211 00 0000 0
Q ss_pred ccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCC-----ceeeeeeeecCcCCeEEEEEecCCCceEEEEEc--
Q 001534 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-- 474 (1058)
Q Consensus 402 ~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~-----~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~-- 474 (1058)
. ..-....=..+...|.++.+...-.+|.+++-.+.+.+ .......+.-..-.|.+++|..++....+++..
T Consensus 108 r-~gr~s~~g~~~~VDp~~R~Igl~~yqgl~~vIp~d~~~sht~~s~l~~fn~rfdel~v~Di~fly~~s~pt~~vly~D 186 (1096)
T KOG1897|consen 108 R-SGRPSDNGQILLVDPKGRVIGLHLYQGLFKVIPIDSDESHTGGSLLKAFNVRFDELNVYDIKFLYGCSDPTLAVLYKD 186 (1096)
T ss_pred c-ccccCCCceEEEECCCCcEEEEEeecCeEEEEEecccccccCcccccccccccCcceEEEEEEEcCCCCCceEEEEEc
Confidence 0 00122233457788999988888899998888777632 111111111122358888887666554555443
Q ss_pred -CCCcEEEEEcCCCce-eEEe---eCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCC-cEEEEE
Q 001534 475 -DDKMIKVWDVVAGRK-QYTF---EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMA 548 (1058)
Q Consensus 475 -~d~~v~vwd~~~~~~-~~~l---~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~-~v~~~~ 548 (1058)
.+..++.|++.-+.. ..+- ..-...+.-+..-|.+.|..|+.|.. .|..-+-+....+..+..... .+..-.
T Consensus 187 s~~~Hv~~yelnl~~ke~~~~~w~~~v~~~a~~li~VP~~~gGvlV~ge~--~I~Y~~~~~~~ai~p~~~~~~t~~~~~~ 264 (1096)
T KOG1897|consen 187 SDGRHVKTYELNLRDKEFVKGPWSNNVDNGASMLIPVPSPIGGVLVIGEE--FIVYMSGDNFVAIAPLTAEQSTIVCYGR 264 (1096)
T ss_pred CCCcEEEEEEeccchhhccccccccccccCCceeeecCCCCceEEEEeee--EEEEeeCCceeEecccccCCceEEEccc
Confidence 445677776654321 1110 01112222333445566666666642 121111111111111112222 222233
Q ss_pred EcCCCCEEEEEecCCCCCceEEEeeCC-CCceeEe------ecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 001534 549 YSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRT------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1058)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1058)
...++...+.+. .+|.++..-+. +++.+.. +-+... ...|+.+-++ ..+++|+.-|.=.+-.+.+..
T Consensus 265 v~~~~~~yLl~d----~~G~Lf~l~l~~~~e~~s~~~lkve~lge~s-iassi~~L~n-g~lFvGS~~gdSqLi~L~~e~ 338 (1096)
T KOG1897|consen 265 VDLQGSRYLLGD----EDGMLFKLLLSHTGETVSGLDLKVEYLGETS-IASSINYLDN-GVLFVGSRFGDSQLIKLNTEP 338 (1096)
T ss_pred ccCCccEEEEec----CCCcEEEEEeecccccccceEEEEEecCCcc-hhhhhhcccC-ceEEEeccCCceeeEEccccC
Confidence 456777766664 46666655444 3332222 222222 3455666555 478888866665665554322
Q ss_pred eE----EEEecCCCCCCcceEEEeC-C---CCEEEEEE---CCCcEEEEECCCCceeeec--ccCCcccccCCCCCCCCC
Q 001534 622 ML----TTVDADGGLPASPRLRFNK-E---GSLLAVTT---SDNGIKILANSDGVRLLRM--LEGRAMDKNRCPSEPISS 688 (1058)
Q Consensus 622 ~~----~~~~~~~~~~~v~~~~~s~-~---~~~l~~~~---~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 688 (1058)
.. ..+..-...++|..+..-. + +..+++++ .||++|+....-+-..... ++|
T Consensus 339 d~gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G--------------- 403 (1096)
T KOG1897|consen 339 DVGSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG--------------- 403 (1096)
T ss_pred CCCchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC---------------
Confidence 22 1122223334666665543 2 23455554 3899999875433221111 111
Q ss_pred CCccccccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCC
Q 001534 689 KPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPD 768 (1058)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~ 768 (1058)
+..+|.+..+ .....|. +++.+--+.-++..+..
T Consensus 404 -------------ikg~w~lk~~------------------v~~~~d~-ylvlsf~~eTrvl~i~~-------------- 437 (1096)
T KOG1897|consen 404 -------------IKGMWSLKSM------------------VDENYDN-YLVLSFISETRVLNISE-------------- 437 (1096)
T ss_pred -------------ccceeEeecc------------------ccccCCc-EEEEEeccceEEEEEcc--------------
Confidence 1111111100 0111222 33333323333333321
Q ss_pred CcCcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEE
Q 001534 769 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1058)
Q Consensus 769 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~ 848 (1058)
.-.......|+.+-+.++++.-+|.-.+ . ..+..+++++-. |... .... .+.++..+.
T Consensus 438 --e~ee~~~~gf~~~~~Tif~S~i~g~~lv-Q------------vTs~~iRl~ss~-~~~~--~W~~----p~~~ti~~~ 495 (1096)
T KOG1897|consen 438 --EVEETEDPGFSTDEQTIFCSTINGNQLV-Q------------VTSNSIRLVSSA-GLRS--EWRP----PGKITIGVV 495 (1096)
T ss_pred --ceEEeccccccccCceEEEEccCCceEE-E------------EecccEEEEcch-hhhh--cccC----CCceEEEEE
Confidence 0111122234444444444433322110 0 011123333322 1111 1222 566777777
Q ss_pred ccCCcEEEEEe-CCeEEEEECCCceEEEEecC--CCCCeEEEEEeCC--CCC---EEEEEeCCCeEEEEEc-ccceeEEE
Q 001534 849 SKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS--PPPAATFLAFHPQ--DNN---IIAIGMEDSSVQIYNV-RVDEVKTK 919 (1058)
Q Consensus 849 s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~~s~~--~~~---~lasg~~dg~I~iwd~-~~~~~~~~ 919 (1058)
+.+...++.+. ++.+...++..+.+ +.... -...|.|+.++|- +.+ ++|+|.++..+.+.-. .+...+..
T Consensus 496 ~~n~sqVvvA~~~~~l~y~~i~~~~l-~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~ 574 (1096)
T KOG1897|consen 496 SANASQVVVAGGGLALFYLEIEDGGL-REVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITH 574 (1096)
T ss_pred eecceEEEEecCccEEEEEEeeccce-eeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeee
Confidence 77777887777 56676677765552 22222 3467999999972 333 8999998887665433 33332222
Q ss_pred --EeCC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCC-CcEEEEEeC
Q 001534 920 --LKGH--QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND-QTHLLVVHE 994 (1058)
Q Consensus 920 --l~~h--~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d-~~~l~~~~d 994 (1058)
+.+. ...|.-..|--|..+|.++..||.+.-+-++...-+........-|. .++.--.|+.. ...+++.+|
T Consensus 575 ~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt----~P~~Lr~f~sk~~t~vfa~sd 650 (1096)
T KOG1897|consen 575 EQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGT----QPISLRTFSSKSRTAVFALSD 650 (1096)
T ss_pred eccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCC----CCcEEEEEeeCCceEEEEeCC
Confidence 2221 22344456666789999999999987665544322211111122222 33555567654 455556678
Q ss_pred CeEEEEeCCCCee
Q 001534 995 SQISVYDSKLECS 1007 (1058)
Q Consensus 995 ~~i~vwd~~~~~~ 1007 (1058)
.-..+|--+++.+
T Consensus 651 rP~viY~~n~kLv 663 (1096)
T KOG1897|consen 651 RPTVIYSSNGKLV 663 (1096)
T ss_pred CCEEEEecCCcEE
Confidence 8777777754443
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0055 Score=61.94 Aligned_cols=191 Identities=9% Similarity=0.105 Sum_probs=112.4
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEE
Q 001534 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1058)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~ 425 (1058)
...+..++|+|+..+|+|+....+.|...+.. |+.+.+.. +.+ .+..-.|++..++.++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVLS 81 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEEE
Confidence 35699999999987899999888999888864 66654322 233 356788999888888877
Q ss_pred EeCCCeEEEEEecCCCc---eeeee--eee---cCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCC---CceeEE--
Q 001534 426 AFSKHIVHLYTYNPTGE---LRQHL--EID---AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---GRKQYT-- 492 (1058)
Q Consensus 426 ~~~d~~i~vwd~~~~~~---~~~~~--~~~---~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~---~~~~~~-- 492 (1058)
.-.++.+.++++..... ..... .+. .+...+-.++|.+.+++ |+.+-......++.+.. +..+..
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeecc
Confidence 76799999999844321 11101 111 24456899999999885 44555566666776553 222211
Q ss_pred ------eeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCC---------CcEEEEEEcCCCCEEE
Q 001534 493 ------FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------NWCTMMAYSADGTRLF 557 (1058)
Q Consensus 493 ------l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~ 557 (1058)
.......+.+++++|. .+++++.......|..+| ..++....+.... .....|+|.++|+..+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred ccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 1123456788999986 557888888899999998 4455444443332 2567899999997777
Q ss_pred EE
Q 001534 558 SC 559 (1058)
Q Consensus 558 ~~ 559 (1058)
+.
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 65
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00044 Score=77.36 Aligned_cols=185 Identities=14% Similarity=0.158 Sum_probs=124.8
Q ss_pred ceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCc
Q 001534 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 853 (1058)
Q Consensus 774 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~ 853 (1058)
.+.+.+++ ++.++.|+-+|.+++++.+.. ... ... | +.. ..+|+
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~-----------------------~~~--~~~--~-s~~------~~~Ge 84 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGN-----------------------PKT--NFD--H-SSS------ILEGE 84 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCc-----------------------ccc--ccc--c-ccc------ccCCc
Confidence 34444443 567888999999998765421 100 001 2 111 56899
Q ss_pred EEEEEe-CCeEEEEECCCceEEEEecCCCCCeEEEEEeCC----CCCEEEEEeCCCeEEEEEcc--cceeEEEEeCCCCC
Q 001534 854 YVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ----DNNIIAIGMEDSSVQIYNVR--VDEVKTKLKGHQNR 926 (1058)
Q Consensus 854 ~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~----~~~~lasg~~dg~I~iwd~~--~~~~~~~l~~h~~~ 926 (1058)
++++++ ||+|.|..+.+.+...++. -..++.+++++|+ ..+.+++|+..| +.++.-+ ..+.-..+..-.++
T Consensus 85 y~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~ 162 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP 162 (846)
T ss_pred eEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence 999999 9999999998887766654 4567999999993 256788899998 7777533 11112246667789
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEEeCCeEEEEeC
Q 001534 927 ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002 (1058)
Q Consensus 927 v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~~d~~i~vwd~ 1002 (1058)
|.++.|. |.++|-++.+| |+|||+.+++.+.. +..+........--..+.|.++.+ |+.|-..+|+|..+
T Consensus 163 I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~--i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I 232 (846)
T KOG2066|consen 163 IHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTN--IPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSI 232 (846)
T ss_pred eEEEEec--CcEEEEecCCC-cEEEeccccceeec--cCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEE
Confidence 9999995 89999999888 89999998775532 111111111112235688888876 56676667888877
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.001 Score=73.40 Aligned_cols=188 Identities=11% Similarity=0.086 Sum_probs=112.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCC---CcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCC
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNV---GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~ 421 (1058)
....+..-+|+|+++.+....-.. ..+.++++.+++.....+ -.+.-..-+|||||+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~~P~fspDG~ 250 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNGAPAFSPDGS 250 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccCCccCCCCCC
Confidence 567888899999998755543322 359999999887654211 233344568999999
Q ss_pred EEEEEe-CCCe--EEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCc--EEEEEcCCCceeEEeeCC
Q 001534 422 MLGVAF-SKHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM--IKVWDVVAGRKQYTFEGH 496 (1058)
Q Consensus 422 ~l~~~~-~d~~--i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~--v~vwd~~~~~~~~~l~~~ 496 (1058)
+|+.+. .||. |.++|+.++... .+..-.+.-+.-.|+|||++ ++.+.+..|. |.+.|++.+.. ..+...
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~----~Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~ 324 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLP----RLTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQV-TRLTFS 324 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCcce----ecccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCce-eEeecc
Confidence 887764 4565 666677776522 23333333447789999997 4445555664 55556555544 333322
Q ss_pred CCCeEEEEecccCCccEEEEEeC-CCe--EEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEec
Q 001534 497 EAPVYSVCPHHKESIQFIFSTAI-DGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1058)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~-d~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1058)
.+.-..-.|+ ++|++++..+. +|. |.+.|+.+... ...-..........|.++++.++..+.
T Consensus 325 ~~~~~~p~~S--pdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 325 GGGNSNPVWS--PDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCCCcCccCC--CCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEecc
Confidence 2222244455 55677777664 344 56666655554 222223334445678889988886653
|
|
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.8e-05 Score=52.33 Aligned_cols=31 Identities=39% Similarity=0.566 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHhhhcCHHHHHHHHHHHhCCC
Q 001534 5 SRELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1058)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (1058)
+.++.++|+|||...||.+|+++|++|+|+.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 5789999999999999999999999999974
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.014 Score=61.75 Aligned_cols=229 Identities=10% Similarity=0.059 Sum_probs=111.6
Q ss_pred EEEECCCCCEEEEEeC-CC--eEEEEEecCCCceeeeeeeecCc-CCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCc
Q 001534 413 RCVWGPDGLMLGVAFS-KH--IVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1058)
Q Consensus 413 ~~~~spd~~~l~~~~~-d~--~i~vwd~~~~~~~~~~~~~~~h~-~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~ 488 (1058)
.=+|.+||+.|+.++. || .+.+.|+.+++..+ |.... ........+|+++ .++-......|+-.|+++.+
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLE 113 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCc
Confidence 3467889987777655 44 57777888865433 33332 2233567778887 45444455688999999987
Q ss_pred eeEEeeCCCCCeEEEEecccCCccEEEEEeC----------------------CCeEEEEeCCCCCceEEecCCCCcEEE
Q 001534 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAI----------------------DGKIKAWLYDYLGSRVDYDAPGNWCTM 546 (1058)
Q Consensus 489 ~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~----------------------d~~i~~wd~~~~~~~~~~~~~~~~v~~ 546 (1058)
....+......+-...|..+.++..++..-. ...|...|+.+++....+. ....+..
T Consensus 114 ~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH 192 (386)
T PF14583_consen 114 ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGH 192 (386)
T ss_dssp EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEE
T ss_pred EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccC
Confidence 6655555566665566665556555443311 1234455666655444443 4557888
Q ss_pred EEEcCCCCEEEEEecCCCCC---ceEEEeeCCCCceeEeecCCC-CCceeEEEEcCCCCEEEEEe-----CCCeEEEEEC
Q 001534 547 MAYSADGTRLFSCGTSKEGE---SHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAG-----DEFQIKFWDM 617 (1058)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~---~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-----~dg~i~iwd~ 617 (1058)
+.|+|....+++-+-.+..+ ..|.+.+.. |.-.+.+..+. ...+..=-|.|||..+.--+ .+..|.-+|+
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence 99999665555443222222 244444543 33333333222 22344456899998766532 3446777888
Q ss_pred CCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECC
Q 001534 618 DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1058)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1058)
.+++........ ....+-.++||++++-=+.|
T Consensus 272 ~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 272 DTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 888765443332 23456667899877654443
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=8.2e-06 Score=87.98 Aligned_cols=203 Identities=15% Similarity=0.207 Sum_probs=132.3
Q ss_pred CCCeeEEEEecCCC-eEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC-CCCEE
Q 001534 346 GSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1058)
Q Consensus 346 ~~~V~~~~fspdg~-~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-d~~~l 423 (1058)
...+.|++++-+.+ .++++|..+|.|.+-.+....-- ...+..+|....++++|++ |...|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~L 118 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHL 118 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHH
Confidence 34677887765543 58999999999999988754321 1122567888999999999 77788
Q ss_pred EEEe----CCCeEEEEEecCC--Cceeeeeeeec-CcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCc-eeEEeeC
Q 001534 424 GVAF----SKHIVHLYTYNPT--GELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEG 495 (1058)
Q Consensus 424 ~~~~----~d~~i~vwd~~~~--~~~~~~~~~~~-h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~-~~~~l~~ 495 (1058)
|+|- .|..+.|||+.++ ...... .+.+ ......+++|-.+.+ ++.+|...+.++++|++... ....+
T Consensus 119 Aagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv-- 193 (783)
T KOG1008|consen 119 AAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV-- 193 (783)
T ss_pred HhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--
Confidence 8873 3667999999886 211111 2222 344566889987777 78889989999999987321 11111
Q ss_pred CCCCeEEEEecccCCccEEEEEeCCCeEEEEe-CCCCCceEEecCC-----CCcEEEEEEcCCCCE-EEEEecCCCCCce
Q 001534 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL-YDYLGSRVDYDAP-----GNWCTMMAYSADGTR-LFSCGTSKEGESH 568 (1058)
Q Consensus 496 ~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd-~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~-l~~~~~~~~~~~~ 568 (1058)
.+..+..+.+.|- .++++++-. ||.|.+|| ..+.+.......+ ...+..++|+|...- +++... ..++
T Consensus 194 nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~t 268 (783)
T KOG1008|consen 194 NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSIT 268 (783)
T ss_pred hhhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---Ccce
Confidence 2334555555552 225666555 99999999 4443333322112 125889999996554 334443 4778
Q ss_pred EEEeeCC
Q 001534 569 LVEWNES 575 (1058)
Q Consensus 569 i~~wd~~ 575 (1058)
|+++|+.
T Consensus 269 Irlydi~ 275 (783)
T KOG1008|consen 269 IRLYDIC 275 (783)
T ss_pred EEEeccc
Confidence 9999875
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0098 Score=65.14 Aligned_cols=253 Identities=13% Similarity=0.166 Sum_probs=137.1
Q ss_pred ceEEEEEccCCceEEEeeccceEEEEEcccCCCCC-CCccc-----------ccccccccCCC--------CCCcccccc
Q 001534 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP-SGKAT-----------ANVAPQLWQPP--------SGTLMTNDI 833 (1058)
Q Consensus 774 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~-~~~~~-----------~~~~~~~~~~~--------~~~~~~~~~ 833 (1058)
.|+.+.|+++...|+++...|.+.+|.+..+.... ..... ....-.+-|+. .|..-...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 57899999999999999999999999998764432 00000 00011122221 121100011
Q ss_pred CCCCCCCCCeeEEEEccCCcEEEEEe-CCeEEEEECCCceEEEE--ecC------CCCCeEEEEEeC----CCC---CEE
Q 001534 834 NESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM--FMS------PPPAATFLAFHP----QDN---NII 897 (1058)
Q Consensus 834 ~~~~h~~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~--~~~------~~~~i~~l~~s~----~~~---~~l 897 (1058)
.. . .++|++++.| |=.++|+|+ +|.+.|.|+.....+.. +.. ....|+++.|+- +|+ -.|
T Consensus 83 ~~--~-~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 83 DA--K-QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp ------S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred ec--c-CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 11 3 6899999997 777999999 89999999987766654 222 234588888872 233 478
Q ss_pred EEEeCCCeEEEEEccc---ce----eEEEEeCCCCCeEEEE-EcCC---------------------CCEEEEEeCCCcE
Q 001534 898 AIGMEDSSVQIYNVRV---DE----VKTKLKGHQNRITGLA-FSPT---------------------LNALVSSGADAQL 948 (1058)
Q Consensus 898 asg~~dg~I~iwd~~~---~~----~~~~l~~h~~~v~~l~-~spd---------------------~~~l~s~s~D~~i 948 (1058)
.+|+..|.+.+|.+.- +. .......+.++|..+. |+.+ ..+++. ..+..+
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe~~i 237 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV-VSESDI 237 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE-E-SSEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE-Ecccce
Confidence 8999999999998752 21 2222335667777665 3221 124444 446679
Q ss_pred EEEeCCCCccccceeeecCCCCCCCCCCeeEEEEc-----CCCcEEEEE-eCCeEEEEeC-CCCeeeEEeec------cc
Q 001534 949 CMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH-----NDQTHLLVV-HESQISVYDS-KLECSRSVSFL------SL 1015 (1058)
Q Consensus 949 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs-----~d~~~l~~~-~d~~i~vwd~-~~~~~~~~~~~------~~ 1015 (1058)
+++...+.+...... ..+ .....+.+- ..+..|++- .+|.+++|.+ ..+.+...... ..
T Consensus 238 rv~~~~~~k~~~K~~----~~~----~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSF----DDP----FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp EEE-TT---EEEEE-----SS-----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred EEEeCCCCcccceee----ccc----cccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 999998876543322 111 113344553 244445553 8999999999 88888887762 26
Q ss_pred cceEEccCCcEEEEEECCCeEEEEc
Q 001534 1016 CPYVFGVSSIFLLSTLTKLSVAVHD 1040 (1058)
Q Consensus 1016 ~~~~~s~~~~~l~~~~~d~~v~vw~ 1040 (1058)
...+++.+|..++-. ...++.++.
T Consensus 310 ~~ssis~~Gdi~~~~-gpsE~~l~s 333 (395)
T PF08596_consen 310 SSSSISRNGDIFYWT-GPSEIQLFS 333 (395)
T ss_dssp TT-EE-TTS-EEEE--SSSEEEEEE
T ss_pred cccEECCCCCEEEEe-CcccEEEEE
Confidence 777889999977664 444544444
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.012 Score=57.93 Aligned_cols=267 Identities=14% Similarity=0.127 Sum_probs=144.7
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCC-ceeEEEEcCCCCEEEEEe-----CCCeEEEEE
Q 001534 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR-SLGVVQFDTTRNRFLAAG-----DEFQIKFWD 616 (1058)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-----~dg~i~iwd 616 (1058)
....|+++|....-+.... .......++|....+....+....+. ....-.|||||.+|++.- .-|.|-|||
T Consensus 69 R~Hgi~~~p~~~ravafAR--rPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 69 RGHGIAFHPALPRAVAFAR--RPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred ccCCeecCCCCcceEEEEe--cCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEe
Confidence 3446788887665444332 12344678998887766655544332 123356999999998864 347899999
Q ss_pred CCCC-ceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEE-ECCCCceeeecccCCcccccCCCCCCCCCCCcccc
Q 001534 617 MDNM-NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL-ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 694 (1058)
Q Consensus 617 ~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1058)
.+.+ +.+..+..++- .-..+.+.+||+.++.+. |-|..- +.... .+..-...
T Consensus 147 ~r~~fqrvgE~~t~Gi--GpHev~lm~DGrtlvvan--GGIethpdfgR~--~lNldsMe-------------------- 200 (366)
T COG3490 147 AREGFQRVGEFSTHGI--GPHEVTLMADGRTLVVAN--GGIETHPDFGRT--ELNLDSME-------------------- 200 (366)
T ss_pred cccccceecccccCCc--CcceeEEecCCcEEEEeC--CceecccccCcc--ccchhhcC--------------------
Confidence 8743 33444554432 345789999999988763 445443 11100 00000000
Q ss_pred ccCCCcccccccCCCCCCCCCCCCCccccccCCCCCccccCCccccccccccccccccCCcCCccceeEEecCCCcCcCc
Q 001534 695 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 774 (1058)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1058)
..+.+.|..+ ........+|...+...
T Consensus 201 --------------------------------------------------PSlvlld~at---G~liekh~Lp~~l~~lS 227 (366)
T COG3490 201 --------------------------------------------------PSLVLLDAAT---GNLIEKHTLPASLRQLS 227 (366)
T ss_pred --------------------------------------------------ccEEEEeccc---cchhhhccCchhhhhcc
Confidence 0011111110 12223334454446677
Q ss_pred eEEEEEccCCceEEEeeccceEEEEEcccCCCC-CCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCc
Q 001534 775 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERN-PSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 853 (1058)
Q Consensus 775 i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~ 853 (1058)
|..++..+||+.++.+...|.- .... .-+.......++..++...+.... ...|-+++.+.+..
T Consensus 228 iRHld~g~dgtvwfgcQy~G~~-------~d~ppLvg~~~~g~~l~~~~~pee~~~~~--------anYigsiA~n~~~g 292 (366)
T COG3490 228 IRHLDIGRDGTVWFGCQYRGPR-------NDLPPLVGHFRKGEPLEFLDLPEEQTAAF--------ANYIGSIAANRRDG 292 (366)
T ss_pred eeeeeeCCCCcEEEEEEeeCCC-------ccCCcceeeccCCCcCcccCCCHHHHHHH--------HhhhhheeecccCC
Confidence 8888888888866655433311 1110 111111222334444433332221 45577899998888
Q ss_pred EEEEEe--CCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 001534 854 YVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1058)
Q Consensus 854 ~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd 910 (1058)
+++..+ .+...+||.++|..+..-. -.....++--. .=+++.+.+|.+.++.
T Consensus 293 lV~lTSP~GN~~vi~da~tG~vv~~a~--l~daaGva~~~---~gf~vssg~G~~~~~s 346 (366)
T COG3490 293 LVALTSPRGNRAVIWDAATGAVVSEAA--LPDAAGVAAAK---GGFAVSSGQGRIIFYS 346 (366)
T ss_pred eEEEecCCCCeEEEEEcCCCcEEeccc--ccccccceecc---CceEEecCCceEEecc
Confidence 888777 5679999999998876432 12223333332 2344556777887764
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.05 Score=60.21 Aligned_cols=269 Identities=13% Similarity=0.127 Sum_probs=170.1
Q ss_pred CccccceeEeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeE
Q 001534 333 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1058)
Q Consensus 333 ~~~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 412 (1058)
+..+.+....+.-......+.+.|+|..+.++-.....+.+-+......... .......-.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~-------------------~~~g~~~p~ 77 (381)
T COG3391 17 NTGTNKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQS-------------------LSVGGVYPA 77 (381)
T ss_pred eecccEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeee-------------------ccCCCcccc
Confidence 3344444455554447788889999965555543333444444431111110 011113455
Q ss_pred EEEECCCCCEEE-EEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEc-CCCcEEEEEcCCCcee
Q 001534 413 RCVWGPDGLMLG-VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGRKQ 490 (1058)
Q Consensus 413 ~~~~spd~~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~-~d~~v~vwd~~~~~~~ 490 (1058)
.++.++++..+. +...+..|.+.|..+........ .+. ....++++|+++.++++-.. .++++.+.|..+++.+
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~--vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIP--VGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEee--ecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 788999888554 44556889999977755444221 122 56789999999863333333 4789999999999888
Q ss_pred EEeeCCCCCeEEEEecccCCccEE-EEEeCCCeEEEEeCCCCCceE-E---ecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001534 491 YTFEGHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRV-D---YDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1058)
Q Consensus 491 ~~l~~~~~~v~~~~~~~~~~~~~l-~s~s~d~~i~~wd~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1058)
.+...-..+ ..+++.|++ ..+ ++-..++.|.+.|........ . .......-..+.++|+|.++++.... +.
T Consensus 154 ~~~~vG~~P-~~~a~~p~g--~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~-~~ 229 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDG--NKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG-SG 229 (381)
T ss_pred EEEecCCCc-ceEEECCCC--CeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc-CC
Confidence 876544444 777877544 544 444578999999966544332 0 11122244578899999987766531 12
Q ss_pred CceEEEeeCCCCceeEe-ecCCCCCceeEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEecC
Q 001534 566 ESHLVEWNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDAD 629 (1058)
Q Consensus 566 ~~~i~~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 629 (1058)
++.+...|..++..... ...... ....+..+|+|..+++.. ..+.+.+.|..+..........
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred CceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 36899999988776655 333332 345688999999998874 4588999999988877776543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.071 Score=61.53 Aligned_cols=158 Identities=10% Similarity=0.066 Sum_probs=94.9
Q ss_pred eEEEEECCCceEEEEecCCCCCe---------EEEEEeCCCCC---EEEEEeCCCeEEEEEcccceeEEE--------Ee
Q 001534 862 KVSLFNMMTFKVMTMFMSPPPAA---------TFLAFHPQDNN---IIAIGMEDSSVQIYNVRVDEVKTK--------LK 921 (1058)
Q Consensus 862 ~i~iwd~~~~~~~~~~~~~~~~i---------~~l~~s~~~~~---~lasg~~dg~I~iwd~~~~~~~~~--------l~ 921 (1058)
+|.-.|++||+....++.....+ .-+.+.. +|+ .++.+..+|.+++.|-.+|+.+.. ..
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~ 350 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWA 350 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccc
Confidence 58888999999998887532222 2222323 555 888999999999999999987521 10
Q ss_pred ---C-CC-CCe----------------------------EEEEEcCCCCEEEEEeCC-----------------------
Q 001534 922 ---G-HQ-NRI----------------------------TGLAFSPTLNALVSSGAD----------------------- 945 (1058)
Q Consensus 922 ---~-h~-~~v----------------------------~~l~~spd~~~l~s~s~D----------------------- 945 (1058)
. .. .++ ..++++|+..++.....+
T Consensus 351 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~ 430 (527)
T TIGR03075 351 TGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGL 430 (527)
T ss_pred cccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceecccc
Confidence 0 00 000 125566666555543333
Q ss_pred ----------CcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEE-eCCeEEEEeC-CCCeeeEEeec
Q 001534 946 ----------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLECSRSVSFL 1013 (1058)
Q Consensus 946 ----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~-~d~~i~vwd~-~~~~~~~~~~~ 1013 (1058)
|.|.-||+.+|+..-.... .... .... ..-.+.+++++ .||.++.+|. +++.+-.++..
T Consensus 431 ~~~p~~~~~~g~l~AiD~~tGk~~W~~~~----~~p~----~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 431 TIKPPPDDHMGSLIAWDPITGKIVWEHKE----DFPL----WGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred ccCCCCCCCceeEEEEeCCCCceeeEecC----CCCC----CCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 3466777777764422111 1110 1111 12244456666 6999999999 99998888662
Q ss_pred ---cccceEEccCCcEEEE
Q 001534 1014 ---SLCPYVFGVSSIFLLS 1029 (1058)
Q Consensus 1014 ---~~~~~~~s~~~~~l~~ 1029 (1058)
.-.++.|..+|+..++
T Consensus 502 ~~~~a~P~ty~~~G~qYv~ 520 (527)
T TIGR03075 502 SGIVGPPVTYEQDGKQYVA 520 (527)
T ss_pred CCceecCEEEEeCCEEEEE
Confidence 2566777778876544
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.015 Score=58.79 Aligned_cols=199 Identities=15% Similarity=0.161 Sum_probs=108.3
Q ss_pred CcCceEEEEEccCCceEEEee-ccceEEEEEcccCCCCCCCcccccccccccCCCCCCcc-ccccCCCCCCCCCeeEEEE
Q 001534 771 AASKVVRLIYTNSGLSLLALA-SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLM-TNDINESKPTEESAACIAL 848 (1058)
Q Consensus 771 ~~~~i~~l~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~~i~~~~~ 848 (1058)
-...+..++|.|+...|++.. ..+.|..++. +|+++ ...+.+ .+....+++
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-----------------------~G~vlr~i~l~g----~~D~EgI~y 72 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-----------------------DGKVLRRIPLDG----FGDYEGITY 72 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET-----------------------T--EEEEEE-SS-----SSEEEEEE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-----------------------CCCEEEEEeCCC----CCCceeEEE
Confidence 455699999999866555554 4566654432 23322 223444 567889999
Q ss_pred ccCCcEEEEEe-CCeEEEEECCCce------EEEEec-----CCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEccc---
Q 001534 849 SKNDSYVMSAS-GGKVSLFNMMTFK------VMTMFM-----SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV--- 913 (1058)
Q Consensus 849 s~d~~~la~~s-dg~i~iwd~~~~~------~~~~~~-----~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~--- 913 (1058)
..++.++++.. ++.+.++++.... ....+. .+...+-.++|+| .++.|.++-+..-..+|.+..
T Consensus 73 ~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~ 151 (248)
T PF06977_consen 73 LGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPG 151 (248)
T ss_dssp -STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-
T ss_pred ECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccC
Confidence 98888877665 7889998883311 111121 2345689999999 555565667776677777654
Q ss_pred ceeEE--EE------eCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccccceeeecCCCCC---CCCCCeeEEE
Q 001534 914 DEVKT--KL------KGHQNRITGLAFSPTL-NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ---SPLVGETKVQ 981 (1058)
Q Consensus 914 ~~~~~--~l------~~h~~~v~~l~~spd~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~ 981 (1058)
...+. .. ......+.++++.|.. ++++....++.|.++| .+|+.+.... ...+.. ..-...-.++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~--L~~g~~gl~~~~~QpEGIa 228 (248)
T PF06977_consen 152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS--LDRGFHGLSKDIPQPEGIA 228 (248)
T ss_dssp SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE---STTGGG-SS---SEEEEE
T ss_pred ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE--eCCcccCcccccCCccEEE
Confidence 21111 11 1234457889998864 5666777888888898 5555443322 222211 0012357899
Q ss_pred EcCCCcEEEEEeCCeEEEE
Q 001534 982 FHNDQTHLLVVHESQISVY 1000 (1058)
Q Consensus 982 fs~d~~~l~~~~d~~i~vw 1000 (1058)
|.++|++.+++..+.+++|
T Consensus 229 ~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 229 FDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp E-TT--EEEEETTTEEEEE
T ss_pred ECCCCCEEEEcCCceEEEe
Confidence 9999999998877777765
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0061 Score=67.68 Aligned_cols=218 Identities=15% Similarity=0.162 Sum_probs=108.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~ 424 (1058)
..-.+..+.++|+|+.++++ .||.-.|+........ ..+.-...+|++.++ +|
T Consensus 31 ~~~~p~~ls~npngr~v~V~--g~geY~iyt~~~~r~k------------------------~~G~g~~~vw~~~n~-yA 83 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC--GDGEYEIYTALAWRNK------------------------AFGSGLSFVWSSRNR-YA 83 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE--ETTEEEEEETTTTEEE------------------------EEEE-SEEEE-TSSE-EE
T ss_pred CCcCCeeEEECCCCCEEEEE--cCCEEEEEEccCCccc------------------------ccCceeEEEEecCcc-EE
Confidence 34568999999999965553 3888888884332211 234556788999554 66
Q ss_pred EEeCCCeEEEE-EecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEE
Q 001534 425 VAFSKHIVHLY-TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1058)
Q Consensus 425 ~~~~d~~i~vw-d~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~ 503 (1058)
+-...++|.|+ +.+. .... .+. ....+..+-. |. +|...+ ++.|.+||+.+++.++.+... +|..+
T Consensus 84 v~~~~~~I~I~kn~~~-~~~k---~i~-~~~~~~~If~---G~--LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V 150 (443)
T PF04053_consen 84 VLESSSTIKIYKNFKN-EVVK---SIK-LPFSVEKIFG---GN--LLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYV 150 (443)
T ss_dssp EE-TTS-EEEEETTEE--TT---------SS-EEEEE----SS--SEEEEE-TTEEEEE-TTT--EEEEESS---E-EEE
T ss_pred EEECCCeEEEEEcCcc-ccce---EEc-CCcccceEEc---Cc--EEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEE
Confidence 66668889996 3332 2111 111 1112333333 66 455554 448999999999999998743 38999
Q ss_pred EecccCCccEEEEEeCCCeEEEEeCCCC----------CceEEecCC-CCcEEEEEEcCCCCEEEEEecCCCCCceEEEe
Q 001534 504 CPHHKESIQFIFSTAIDGKIKAWLYDYL----------GSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1058)
Q Consensus 504 ~~~~~~~~~~l~s~s~d~~i~~wd~~~~----------~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1058)
.|+++ |.+++..+.+ .+.+++.+.. +..+..... ...|.+..|..| -++++. .+++..+
T Consensus 151 ~Ws~~--g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT------~~~lkYl 220 (443)
T PF04053_consen 151 IWSDD--GELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT------SNHLKYL 220 (443)
T ss_dssp EE-TT--SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-------TTEEEEE
T ss_pred EEECC--CCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEc------CCeEEEE
Confidence 99954 5777777654 6666654432 012222222 557888888776 333333 2245552
Q ss_pred eCCCCc--eeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001534 573 NESEGA--IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1058)
Q Consensus 573 d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 618 (1058)
..|+ .+..+. . ++.-+.+.+..+.++....|+.+..+.+.
T Consensus 221 --~~Ge~~~i~~ld---~-~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 221 --VNGETGIIAHLD---K-PLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp --ETTEEEEEEE-S---S---EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred --EcCCcceEEEcC---C-ceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 2233 222221 2 55666666666677777777777766654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.063 Score=59.86 Aligned_cols=231 Identities=14% Similarity=0.074 Sum_probs=111.7
Q ss_pred cCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceee---eeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEE-c
Q 001534 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQ---HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD-V 484 (1058)
Q Consensus 409 ~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~---~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd-~ 484 (1058)
+.+.++.|+.+. .|++-..||.+++||+.+...... .....-....+....+..+|- .+++ .++.+.+.+ .
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt--~~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLT--GNNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEEC--CCCeEEEEeCc
Confidence 789999999865 455666999999999874330000 000011112222233433442 3333 344444432 2
Q ss_pred CCCceeEEe---eCCCC------CeEE-EEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCC
Q 001534 485 VAGRKQYTF---EGHEA------PVYS-VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1058)
Q Consensus 485 ~~~~~~~~l---~~~~~------~v~~-~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1058)
......+.+ .+... .... ..+. .+....+....++.+.+.+-..... ....+++..|++||+|+
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~--~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~ 229 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS--SDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGK 229 (410)
T ss_pred cccchhhccccCCCcccccccccccccceEee--cCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCC
Confidence 211111111 11000 0000 1122 2223444444555555333222111 11246899999999999
Q ss_pred EEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCC
Q 001534 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1058)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1058)
+++.... ++.+.+.+..-.+....+..........+.|..+. ..+..|. ..+..+...+
T Consensus 230 ~iAl~t~----~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d---------av~l~~~----~~l~lvg~~~---- 288 (410)
T PF04841_consen 230 FIALFTD----SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND---------AVVLSWE----DELLLVGPDG---- 288 (410)
T ss_pred EEEEEEC----CCCEEEEECcccceeEEeecCcCCCCcEEEEECCC---------cEEEEeC----CEEEEECCCC----
Confidence 9988763 67788887665666666655533345566666443 3333331 1122222211
Q ss_pred cceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCC
Q 001534 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674 (1058)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 674 (1058)
..+.|.-++..++..-.|| +||+.-... +.++..+..
T Consensus 289 -~~~~~~~~~~~~l~~E~DG-~riit~~~~-~~l~~Vp~~ 325 (410)
T PF04841_consen 289 -DSISFWYDGPVILVSEIDG-VRIITSTSH-EFLQRVPDS 325 (410)
T ss_pred -CceEEeccCceEEeccCCc-eEEEeCCce-EEEEECCHH
Confidence 1244544555445555554 788765444 444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.12 Score=57.28 Aligned_cols=242 Identities=14% Similarity=0.115 Sum_probs=157.6
Q ss_pred CeEEEEECCCCCEEEEEeC-CCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCc
Q 001534 410 SVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1058)
Q Consensus 410 ~v~~~~~spd~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~ 488 (1058)
....+...|++..+..... ...+..-+.. ...... ....-...-..++.++++.+ ..++...+..|.+.|..+.+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 4556788888865554432 2244444443 211111 11111133457888999987 55666667899999988877
Q ss_pred eeEEeeCCCCCeEEEEecccCCccEEEEEeC---CCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001534 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1058)
Q Consensus 489 ~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~---d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1058)
..+....-. ....+++++.. +.++.+.. ++++.+.|-.+............+ ..++++|+|+.++.+.. .
T Consensus 108 ~~~~~~vG~-~P~~~~~~~~~--~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~---~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVDPDG--KYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNS---D 180 (381)
T ss_pred eeeEeeecc-CCceEEECCCC--CEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEec---C
Confidence 776654322 56677777543 45554444 688888888877776664443334 89999999998887752 4
Q ss_pred CceEEEeeCCCCceeEeec----CCCCCceeEEEEcCCCCEEEEEeCC---CeEEEEECCCCceEEEEecCCCCCCcceE
Q 001534 566 ESHLVEWNESEGAIKRTYS----GFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1058)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1058)
++.+.+.|..+....+ -. ......-..+.++|+|++++..... +.+...|..++........-... .-..+
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence 7889999977655543 11 0111134568899999977775433 68999999988877763222222 34678
Q ss_pred EEeCCCCEEEEEEC-CCcEEEEECCCC
Q 001534 639 RFNKEGSLLAVTTS-DNGIKILANSDG 664 (1058)
Q Consensus 639 ~~s~~~~~l~~~~~-dg~i~iw~~~~~ 664 (1058)
.++|+|..+.+... .+.+.+.|..+.
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 99999999988855 478888888776
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.084 Score=59.84 Aligned_cols=244 Identities=12% Similarity=0.118 Sum_probs=128.7
Q ss_pred CeEEEEECCCCCEEEEE-eCCC----eEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcC---------
Q 001534 410 SVNRCVWGPDGLMLGVA-FSKH----IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--------- 475 (1058)
Q Consensus 410 ~v~~~~~spd~~~l~~~-~~d~----~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~--------- 475 (1058)
.+...++||||+++|.+ +..| .++++|+.+++.+... +... ....+.|.+|++. ++.+...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--IENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--EEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--cccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 34568899999999876 3333 5999999998655421 1111 1223999999985 3444322
Q ss_pred -CCcEEEEEcCCCcee--EEeeCCCCC--eEEEEecccCCccEEEEEeC---C-CeEEEEeCCCC----CceEEecC-CC
Q 001534 476 -DKMIKVWDVVAGRKQ--YTFEGHEAP--VYSVCPHHKESIQFIFSTAI---D-GKIKAWLYDYL----GSRVDYDA-PG 541 (1058)
Q Consensus 476 -d~~v~vwd~~~~~~~--~~l~~~~~~--v~~~~~~~~~~~~~l~s~s~---d-~~i~~wd~~~~----~~~~~~~~-~~ 541 (1058)
...|+.|.+.++..- ..+...... ...+..+ .++++++..+. + ..+.+.|+... .....+.. ..
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s--~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRS--KDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEec--CcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 224788888776432 344443333 3455555 55577665433 2 34777777764 22233332 33
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCce---eEeecCCCC-CceeEEEEcCCCCEEEEE-eCCC--eEEE
Q 001534 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRK-RSLGVVQFDTTRNRFLAA-GDEF--QIKF 614 (1058)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~dg--~i~i 614 (1058)
+....+... +..++..+..+...+.|...++..... ...+..+.. ..+..+.. .+.+|+.. -.++ .|++
T Consensus 278 ~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v 353 (414)
T PF02897_consen 278 GVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRV 353 (414)
T ss_dssp S-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEE
T ss_pred ceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEE
Confidence 333334333 443333332334567788888877652 223333333 13444443 45555554 3444 5888
Q ss_pred EECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEE--C--CCcEEEEECCCCc
Q 001534 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT--S--DNGIKILANSDGV 665 (1058)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~--dg~i~iw~~~~~~ 665 (1058)
+++..+.....+..... +.|..+...+++..+.... . -+++..||+.+++
T Consensus 354 ~~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 354 YDLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 99985555555555432 2345555555555443332 2 3578888888774
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.083 Score=55.92 Aligned_cols=230 Identities=13% Similarity=0.106 Sum_probs=132.8
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEe-----
Q 001534 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF----- 493 (1058)
Q Consensus 419 d~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l----- 493 (1058)
.++.|+.|+.+| +.+++......... . .+...|..+...++-+ .++.-+ |+.+.++++..-.....-
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhccccccccccc
Confidence 678999999998 89999833322221 1 1333499999999887 444444 599999998764433310
Q ss_pred ---------eCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCC-----CceEEecCCCCcEEEEEEcCCCCEEEEE
Q 001534 494 ---------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-----GSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1058)
Q Consensus 494 ---------~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1058)
......+...+......+...+......+|.+|..... .....+.. ...+.+++|. ++.++.+
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVG 154 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEE
Confidence 11223444444112233344555555668888887663 22233333 3677888888 5666666
Q ss_pred ecCCCCCceEEEeeCCCCceeEeecCCCC-----------CceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE--EE
Q 001534 560 GTSKEGESHLVEWNESEGAIKRTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT--TV 626 (1058)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~ 626 (1058)
. .....+.|+.++.....+..... .++..+... ++.+|++. +..-.+.|. .|+... .+
T Consensus 155 ~-----~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i 225 (275)
T PF00780_consen 155 T-----SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTI 225 (275)
T ss_pred e-----CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEE
Confidence 4 34488999987765544322211 123333333 34555543 222233343 344333 33
Q ss_pred ecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeecccCCc
Q 001534 627 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 675 (1058)
Q Consensus 627 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 675 (1058)
.... ....+++. ..+|++.+.+ .|.||++.++ ++++.+..+.
T Consensus 226 ~W~~---~p~~~~~~--~pyli~~~~~-~iEV~~~~~~-~lvQ~i~~~~ 267 (275)
T PF00780_consen 226 QWSS---APQSVAYS--SPYLIAFSSN-SIEVRSLETG-ELVQTIPLPN 267 (275)
T ss_pred EcCC---chhEEEEE--CCEEEEECCC-EEEEEECcCC-cEEEEEECCC
Confidence 3332 34556653 4577776664 6999999999 7777776543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.024 Score=55.96 Aligned_cols=248 Identities=13% Similarity=0.165 Sum_probs=142.0
Q ss_pred ceeEeecCCCCeeEEEEecCCCeEEEEEeCCC-cEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEE
Q 001534 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG-DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1058)
Q Consensus 338 ~~~~~~~h~~~V~~~~fspdg~~lla~g~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 416 (1058)
+++..+.-...-..++|+|..++-++.+-.-| ...++|..+++.+.... ......+.+|. .|
T Consensus 59 k~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-----------s~~~RHfyGHG------vf 121 (366)
T COG3490 59 KIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-----------SQEGRHFYGHG------VF 121 (366)
T ss_pred ceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-----------cccCceeeccc------cc
Confidence 34444444455667889998876666665444 46788988877654210 01112245554 69
Q ss_pred CCCCCEEEEEeC-----CCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcC----------------
Q 001534 417 GPDGLMLGVAFS-----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD---------------- 475 (1058)
Q Consensus 417 spd~~~l~~~~~-----d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~---------------- 475 (1058)
||||.+|...-. .|.|-|||...+ +....++..|.-.-..+.+.+||+. ++.+..
T Consensus 122 s~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrt--lvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 122 SPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRT--LVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred CCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcE--EEEeCCceecccccCccccchh
Confidence 999999977633 467999999843 4445577788888899999999994 444321
Q ss_pred --CCcEEEEEcCCCceeE--Eee--CCCCCeEEEEecccCCccEEEEEeCCCe-----EEEEeCCCCCceEEecCC----
Q 001534 476 --DKMIKVWDVVAGRKQY--TFE--GHEAPVYSVCPHHKESIQFIFSTAIDGK-----IKAWLYDYLGSRVDYDAP---- 540 (1058)
Q Consensus 476 --d~~v~vwd~~~~~~~~--~l~--~~~~~v~~~~~~~~~~~~~l~s~s~d~~-----i~~wd~~~~~~~~~~~~~---- 540 (1058)
.-++.+.|..+|..+. ++. .+...|.-++..+ ||..++.+-..|. -.+=....++....+...
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~--dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~ 275 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR--DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQT 275 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC--CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHH
Confidence 1134455656666543 222 2444566665543 3233222211111 001111112222222211
Q ss_pred ---CCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 001534 541 ---GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1058)
Q Consensus 541 ---~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 616 (1058)
...|-+++.+.+..+++..+. ..+...+||..+|..+..-..... ..+ .+...-+++.+.+|.+.++.
T Consensus 276 ~~~anYigsiA~n~~~glV~lTSP---~GN~~vi~da~tG~vv~~a~l~da---aGv--a~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 276 AAFANYIGSIAANRRDGLVALTSP---RGNRAVIWDAATGAVVSEAALPDA---AGV--AAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred HHHHhhhhheeecccCCeEEEecC---CCCeEEEEEcCCCcEEeccccccc---ccc--eeccCceEEecCCceEEecc
Confidence 236778888877777776653 356688999999988765443221 122 23344466667778887764
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.42 Score=57.22 Aligned_cols=199 Identities=13% Similarity=0.133 Sum_probs=118.0
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEeeCCCCC--------eEEEEecc--------------cCCccEEEEEeCCCeEEEE
Q 001534 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP--------VYSVCPHH--------------KESIQFIFSTAIDGKIKAW 526 (1058)
Q Consensus 469 ~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~--------v~~~~~~~--------------~~~~~~l~s~s~d~~i~~w 526 (1058)
.++.++.++.|.-.|..+|+.+.++...... ...+++.. ...+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4666777788888888888887776532211 11222211 1233578889999999999
Q ss_pred eCCCCCceEEecCCCC------------cEEEEEEcC--CCCEEEEEecCCC------CCceEEEeeCCCCceeEeecCC
Q 001534 527 LYDYLGSRVDYDAPGN------------WCTMMAYSA--DGTRLFSCGTSKE------GESHLVEWNESEGAIKRTYSGF 586 (1058)
Q Consensus 527 d~~~~~~~~~~~~~~~------------~v~~~~~s~--~~~~l~~~~~~~~------~~~~i~~wd~~~~~~~~~~~~~ 586 (1058)
|.++++....+..... ....+.-+| .+..+++++...+ .++.|+-+|.++|+.+..+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9999888765532211 001111122 1345555543222 2688999999999998876531
Q ss_pred C---------C-------Cc-eeEEEEcCCCCEEEEEe------------------CCCeEEEEECCCCceEEEEecCCC
Q 001534 587 R---------K-------RS-LGVVQFDTTRNRFLAAG------------------DEFQIKFWDMDNMNMLTTVDADGG 631 (1058)
Q Consensus 587 ~---------~-------~~-v~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1058)
. + .. -...+++++...++.+. ..+.|.-.|.++|+....++...|
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 0 00 12345555555555422 134567778889988877765222
Q ss_pred C-------CCcceEEEeC-CCC---EEEEEECCCcEEEEECCCCcee
Q 001534 632 L-------PASPRLRFNK-EGS---LLAVTTSDNGIKILANSDGVRL 667 (1058)
Q Consensus 632 ~-------~~v~~~~~s~-~~~---~l~~~~~dg~i~iw~~~~~~~~ 667 (1058)
. ....-+.+.. +|+ .++.++.+|.+.++|-.+++.+
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 0 0111223333 553 7899999999999999999543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0059 Score=70.61 Aligned_cols=157 Identities=9% Similarity=0.019 Sum_probs=93.1
Q ss_pred CCeeEEEEccCCcEEEEEe-------CC--eEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCC--------
Q 001534 841 ESAACIALSKNDSYVMSAS-------GG--KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED-------- 903 (1058)
Q Consensus 841 ~~i~~~~~s~d~~~la~~s-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d-------- 903 (1058)
..+.+.++||||+.+|... |+ .|.+++.. +.......+ ...+.-.|+| +|+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECC-CCCceEEEecCcceEEEec
Confidence 4678899999999987664 32 46666653 333222332 2478899999 87777766432
Q ss_pred ----CeEEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEE---EeCCCCccccceeeecCCCCCCCCCC
Q 001534 904 ----SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCM---WSIDKWEKLKSRFIQAPAGRQSPLVG 976 (1058)
Q Consensus 904 ----g~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1058)
+.+.+.+++.++... ...+.|..+.|||||+.+|... ++.|.+ -....|+..-........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 234434554443322 2356799999999999988766 467776 444455411111111222111 23
Q ss_pred eeEEEEcCCCcEEEEEeCCeEEEEeC--CCCeee
Q 001534 977 ETKVQFHNDQTHLLVVHESQISVYDS--KLECSR 1008 (1058)
Q Consensus 977 v~~~~fs~d~~~l~~~~d~~i~vwd~--~~~~~~ 1008 (1058)
+.++.|..++.+++...++.-.+|.+ .+....
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~ 532 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSD 532 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCcccc
Confidence 57899999999664444444445555 554433
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.23 Score=55.41 Aligned_cols=138 Identities=17% Similarity=0.272 Sum_probs=78.9
Q ss_pred EEEccCCcEEEEEe-CCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCC-
Q 001534 846 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH- 923 (1058)
Q Consensus 846 ~~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h- 923 (1058)
..++.+....+... ++.+.+.+....+. +. ..+++..+++|| ++++||.-..+|.+.+.+.+-.+.+..+...
T Consensus 184 ~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~ 258 (410)
T PF04841_consen 184 PLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS 258 (410)
T ss_pred eEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCc
Confidence 34555555554444 56666555433211 22 346899999999 9999999999999999886655555555433
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEEeCCeEEEEeC-
Q 001534 924 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS- 1002 (1058)
Q Consensus 924 ~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~~d~~i~vwd~- 1002 (1058)
......+.|. |.|..+..|. . ...+-.+.+ ..+.|..++..++...-..+||..-
T Consensus 259 ~~~p~~~~WC---------G~dav~l~~~--~-----~l~lvg~~~--------~~~~~~~~~~~~l~~E~DG~riit~~ 314 (410)
T PF04841_consen 259 KSPPKQMAWC---------GNDAVVLSWE--D-----ELLLVGPDG--------DSISFWYDGPVILVSEIDGVRIITST 314 (410)
T ss_pred CCCCcEEEEE---------CCCcEEEEeC--C-----EEEEECCCC--------CceEEeccCceEEeccCCceEEEeCC
Confidence 2344455554 4455445551 1 011111121 3356666666666664334777766
Q ss_pred CCCeeeEEee
Q 001534 1003 KLECSRSVSF 1012 (1058)
Q Consensus 1003 ~~~~~~~~~~ 1012 (1058)
+.+.+..+..
T Consensus 315 ~~~~l~~Vp~ 324 (410)
T PF04841_consen 315 SHEFLQRVPD 324 (410)
T ss_pred ceEEEEECCH
Confidence 5555555543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=6.6e-05 Score=81.24 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=108.8
Q ss_pred CCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCce--EEecCCCCcEEEEEEcC-CCCEEEEEecCCCCCceEEEeeC
Q 001534 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR--VDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNE 574 (1058)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~ 574 (1058)
..+.|+++....+..+++.|..+|.|-+-.++..... .....+....++++|++ |.+.|+++-...+.+..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 3456666655555567888889999998877764433 23455667889999988 56677776544456778999999
Q ss_pred CCC--cee--EeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEecCCCCCCcceEEEeC-CCCEEE
Q 001534 575 SEG--AIK--RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNK-EGSLLA 648 (1058)
Q Consensus 575 ~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~ 648 (1058)
.++ .+. ..+.+.......+++|..+.+.+++|.....+.++|++.. .....+.. ..+..+...| .+.+++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT----k~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT----KYVQGITVDPFSPNYFC 212 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh----hhcccceecCCCCCcee
Confidence 876 222 1222222224668899988888888988889999998832 22222221 1356678888 777887
Q ss_pred EEECCCcEEEEEC
Q 001534 649 VTTSDNGIKILAN 661 (1058)
Q Consensus 649 ~~~~dg~i~iw~~ 661 (1058)
+-. ||.|-+||.
T Consensus 213 s~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 213 SNS-DGDIAIWDT 224 (783)
T ss_pred ccc-cCceeeccc
Confidence 766 899999994
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.089 Score=55.72 Aligned_cols=229 Identities=14% Similarity=0.079 Sum_probs=128.1
Q ss_pred CCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 001534 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYT 436 (1058)
Q Consensus 357 dg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd 436 (1058)
.++ .|+.|+.+| +.+++......... ..+...|..+...|+-+.|++-+ |+.+.+++
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~--------------------i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~ 62 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTR--------------------ILKLSSITQLSVLPELNLLLVLS-DGQLYVYD 62 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCcccee--------------------EeecceEEEEEEecccCEEEEEc-CCccEEEE
Confidence 344 577788888 89999832221110 11333499999999888776664 49999999
Q ss_pred ecCCCceeeeee-----------eecCcCCeEEEE--EecCCCceEEEEEcCCCcEEEEEcCCC-----ceeEEeeCCCC
Q 001534 437 YNPTGELRQHLE-----------IDAHVGGVNDIA--FAHPNKQLCIVTCGDDKMIKVWDVVAG-----RKQYTFEGHEA 498 (1058)
Q Consensus 437 ~~~~~~~~~~~~-----------~~~h~~~v~~~~--fs~d~~~~~l~s~~~d~~v~vwd~~~~-----~~~~~l~~~~~ 498 (1058)
+..-........ .......+...+ -...+.. .|+.+ ..+.|.+|.+... +..+.+. -..
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~ 139 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPD 139 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEE-ECCEEEEEEEECCcccccceeEEEE-cCC
Confidence 876443221100 011222344444 1123332 44444 3558888887653 3445554 447
Q ss_pred CeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCC------------CcEEEEEEcCCCCEEEEEecCCCCC
Q 001534 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG------------NWCTMMAYSADGTRLFSCGTSKEGE 566 (1058)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~------------~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1058)
.+.+++|.. +.++.|.. +...+.|+.++.......... .++..+.. +++.+|++. +
T Consensus 140 ~~~~i~~~~----~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~------~ 207 (275)
T PF00780_consen 140 PPSSIAFLG----NKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY------D 207 (275)
T ss_pred CcEEEEEeC----CEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe------c
Confidence 788888872 46666664 447778888655544332111 12333333 445666543 2
Q ss_pred ceEEEeeCCCCceeE--eecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecC
Q 001534 567 SHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1058)
Q Consensus 567 ~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1058)
..-...| ..|+..+ .+.-.. ....+++. ..++++.+. +.|.||++.+++.++.+...
T Consensus 208 ~~g~fv~-~~G~~~r~~~i~W~~--~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 NIGVFVN-KNGEPSRKSTIQWSS--APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred ceEEEEc-CCCCcCcccEEEcCC--chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 2222333 3454433 222211 33445553 457777666 45999999999999998754
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.051 Score=57.20 Aligned_cols=223 Identities=15% Similarity=0.102 Sum_probs=134.2
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCCCe
Q 001534 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1058)
Q Consensus 352 ~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~ 431 (1058)
-.|.|+...++.+.-..+.|.-|+..+++... + .+.+.+.++..-.++..|+++...
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~-~~p~~~~~~~~~d~~g~Lv~~~~g-- 86 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------F-PSPGGFSSGALIDAGGRLIACEHG-- 86 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------E-ECCCCcccceeecCCCeEEEEccc--
Confidence 35677877777777788999999998775432 1 133344555555555555555332
Q ss_pred EEEEEecCCCceeeeeeee-cC-cCCeEEEEEecCCCceEEEEEcCC----------CcEEEEEcC-CCceeEEeeCCCC
Q 001534 432 VHLYTYNPTGELRQHLEID-AH-VGGVNDIAFAHPNKQLCIVTCGDD----------KMIKVWDVV-AGRKQYTFEGHEA 498 (1058)
Q Consensus 432 i~vwd~~~~~~~~~~~~~~-~h-~~~v~~~~fs~d~~~~~l~s~~~d----------~~v~vwd~~-~~~~~~~l~~~~~ 498 (1058)
+.+++.+++.......... +. ....+.+...|+|. +.+ +... ..-.+|-+. .+..++.+..+-.
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~ 163 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLT 163 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcCCCCEEEeecCcEE
Confidence 5677766554422222211 11 23567888999997 333 3322 112344444 5677777766667
Q ss_pred CeEEEEecccCCccEEEEE-eCCCeEEEEeCCC-----CCc--eEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEE
Q 001534 499 PVYSVCPHHKESIQFIFST-AIDGKIKAWLYDY-----LGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1058)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~-s~d~~i~~wd~~~-----~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1058)
.-+.++|+|++ +.++.+ +..+.|..|+++. ... ........+..-.++...+|.+-+++.. +.+.|.
T Consensus 164 ~~NGla~SpDg--~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~ 238 (307)
T COG3386 164 IPNGLAFSPDG--KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVV 238 (307)
T ss_pred ecCceEECCCC--CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEE
Confidence 77899999765 455544 5568888888763 111 1222233445556777788888764432 123799
Q ss_pred EeeCCCCceeEeecCCCCCceeEEEEc-CCCCEEEEEe
Q 001534 571 EWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAG 607 (1058)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 607 (1058)
.|+.. |+++..+..... .+.+++|- |+.+.|++.+
T Consensus 239 ~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 239 RFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 99988 998888887754 56777774 4455555544
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.13 Score=54.11 Aligned_cols=222 Identities=15% Similarity=0.105 Sum_probs=126.5
Q ss_pred EECCCCCEE-EEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEe
Q 001534 415 VWGPDGLML-GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1058)
Q Consensus 415 ~~spd~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l 493 (1058)
.|.++...| .+--..+.|.-|+..+++.. .+. +.+.+.++..-..+. .|+++. ..+.+++.+++..+..+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~----~~~-~p~~~~~~~~~d~~g--~Lv~~~--~g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR----VFP-SPGGFSSGALIDAGG--RLIACE--HGVRLLDPDTGGKITLL 101 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE----EEE-CCCCcccceeecCCC--eEEEEc--cccEEEeccCCceeEEe
Confidence 467776644 44456778999998865422 222 344455555544454 466553 35677777666553322
Q ss_pred eC-----CCCCeEEEEecccCCccEEEEEeC-----C----CeEEEEeCC-CCCceEEecCCCCcEEEEEEcCCCCEEEE
Q 001534 494 EG-----HEAPVYSVCPHHKESIQFIFSTAI-----D----GKIKAWLYD-YLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1058)
Q Consensus 494 ~~-----~~~~v~~~~~~~~~~~~~l~s~s~-----d----~~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1058)
.. .....+.+...++ |.+.++... . ..=.+|.++ .+........+-..-+.++||||++.++.
T Consensus 102 ~~~~~~~~~~r~ND~~v~pd--G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPD--GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccccCCCCcCCCCceeEcCC--CCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEE
Confidence 21 1133445555543 344443333 0 111455545 33333333333445678999999998887
Q ss_pred EecCCCCCceEEEeeCCC--Cc----eeEeecCCCCCceeEEEEcCCCCEEEEEeCCC-eEEEEECCCCceEEEEecCCC
Q 001534 559 CGTSKEGESHLVEWNESE--GA----IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTVDADGG 631 (1058)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~--~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~ 631 (1058)
+-. ..+.|+-|++.. +. ..........+..-.++...+|++.+++..+| .|.+|+.. ++++..+..+..
T Consensus 180 aDT---~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~ 255 (307)
T COG3386 180 ADT---PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK 255 (307)
T ss_pred EeC---CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC
Confidence 753 356788777652 21 11112212222455677888888876554444 89999999 999999887743
Q ss_pred CCCcceEEEe-CCCCEEEEEECC
Q 001534 632 LPASPRLRFN-KEGSLLAVTTSD 653 (1058)
Q Consensus 632 ~~~v~~~~~s-~~~~~l~~~~~d 653 (1058)
.+++++|- |+.+.|++.+..
T Consensus 256 --~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 256 --RPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred --CCccceEeCCCcCEEEEEecC
Confidence 46777776 455666655543
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0017 Score=67.14 Aligned_cols=113 Identities=10% Similarity=0.140 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHhCCCcc----------HHHHHHHHhcCCHHHHHHHhcCCCccccccchhhHHHH
Q 001534 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN----------MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFE 75 (1058)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~ 75 (1058)
+.+..+|..++...|+.+.+..|.+|+|...+ +.++.+++..|+-.-|++.+......-... ...+-|.
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~-~s~LE~~ 195 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK-SSSLEFK 195 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc-cccHHHH
Confidence 33588999999999999999999999998763 688888999999999999887643221222 2238899
Q ss_pred HHHHHHHHHHccCCHH--HHHHHHHhhcccccccCHHHHHHHHHhh
Q 001534 76 IRKQKYLEALDRQDRA--KAVEILVKDLKVFSSFNEELFKEITQLL 119 (1058)
Q Consensus 76 i~~~~~lEll~~~~~~--~A~~~l~~~~~~~~~~~~~~~~~l~~l~ 119 (1058)
+..+.|++++..|... +|+...|+.++|+......+.+.+-..+
T Consensus 196 Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl 241 (394)
T KOG2817|consen 196 LHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSL 241 (394)
T ss_pred HHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 9999999999998888 9999999999999665555555554433
|
|
| >cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID) | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00055 Score=62.15 Aligned_cols=79 Identities=16% Similarity=0.291 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccccchhccCCC-------chhHHHHH
Q 001534 71 KIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSARNIM 143 (1058)
Q Consensus 71 ~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~r~~l 143 (1058)
.++|+|+.|.||||+..|...+|..|+++.-..+...+.+++++|+.+.+..++.+++....++. .+.+-..|
T Consensus 28 ~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s~~lL 107 (133)
T cd08044 28 QLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDAYSLL 107 (133)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHHHHHH
Confidence 49999999999999999999999999998777776567899999999999988888877666654 36667788
Q ss_pred HHHHHh
Q 001534 144 LVELKK 149 (1058)
Q Consensus 144 ~~~l~~ 149 (1058)
+..|++
T Consensus 108 ~~~L~~ 113 (133)
T cd08044 108 LRFLES 113 (133)
T ss_pred HHHHHH
Confidence 888877
|
The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.21 Score=54.55 Aligned_cols=85 Identities=12% Similarity=0.197 Sum_probs=61.0
Q ss_pred CCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCC-----------------CEE
Q 001534 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-----------------NRF 603 (1058)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~l 603 (1058)
...+.+++.+|++++.++. |.-|+|.++|+.++..++.++|..+..+.-+.....+ .+|
T Consensus 307 ~R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred CceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 3457899999998877765 3578899999999999999888876433322221111 123
Q ss_pred EE-EeCCCeEEEEECCCCceEEEEecC
Q 001534 604 LA-AGDEFQIKFWDMDNMNMLTTVDAD 629 (1058)
Q Consensus 604 ~~-~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1058)
+. +-.-|.|.||++++|..+..+...
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 33 567899999999999888877653
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0015 Score=71.26 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=78.1
Q ss_pred CCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCccc
Q 001534 881 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT-GLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959 (1058)
Q Consensus 881 ~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~-~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~ 959 (1058)
...|..+.|+| .-.++|++..+|.|-+..++ .+.+.++.-|...++ +++|-|||+.||.|-.||+|++-|++++..+
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34678899999 88999999999999999988 777889887888888 9999999999999999999999999998866
Q ss_pred cceeeecCCCCCCCCCCeeEEEEc
Q 001534 960 KSRFIQAPAGRQSPLVGETKVQFH 983 (1058)
Q Consensus 960 ~~~~~~~~~~~~~~~~~v~~~~fs 983 (1058)
..... .. ...|.++.|+
T Consensus 98 ~~~~~-s~------e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLF-SV------ETDISKGIWD 114 (665)
T ss_pred ecccc-cc------ccchheeecc
Confidence 54211 11 1447788887
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0012 Score=44.65 Aligned_cols=39 Identities=36% Similarity=0.635 Sum_probs=35.0
Q ss_pred ceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001534 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1058)
Q Consensus 914 ~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd 952 (1058)
+++...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355677788999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.069 Score=57.93 Aligned_cols=177 Identities=14% Similarity=0.111 Sum_probs=104.2
Q ss_pred cEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCC----CCEEEEEeC---------C-CeEEEE
Q 001534 370 DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GLMLGVAFS---------K-HIVHLY 435 (1058)
Q Consensus 370 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd----~~~l~~~~~---------d-~~i~vw 435 (1058)
.|++.|..+.+.+....+. -..+-..+..+.|..+ ..+|++|+. . |.|.++
T Consensus 3 ~i~l~d~~~~~~~~~~~l~---------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~ 67 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELE---------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVF 67 (321)
T ss_dssp EEEEEETTTSSEEEEEEEE---------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEE
T ss_pred EEEEEeCCCCeEEEEEECC---------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEE
Confidence 5777777777655432221 0111222334445443 467887743 2 889999
Q ss_pred EecCC----CceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCc-eeEEe-eCCCCCeEEEEecccC
Q 001534 436 TYNPT----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTF-EGHEAPVYSVCPHHKE 509 (1058)
Q Consensus 436 d~~~~----~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~-~~~~l-~~~~~~v~~~~~~~~~ 509 (1058)
++... ..+...... ...++|++++-- +. .++.+. .+.|.+|++...+ ....- ......+.++... +
T Consensus 68 ~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~--~~--~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~ 139 (321)
T PF03178_consen 68 EISESPENNFKLKLIHST-EVKGPVTAICSF--NG--RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K 139 (321)
T ss_dssp EECSS-----EEEEEEEE-EESS-EEEEEEE--TT--EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T
T ss_pred EEEcccccceEEEEEEEE-eecCcceEhhhh--CC--EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--c
Confidence 99984 233333222 357889998876 33 333333 5799999998887 43322 2233466666654 3
Q ss_pred CccEEEEEeCCCeEEEEeCCCCCc-eEE--ecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCC
Q 001534 510 SIQFIFSTAIDGKIKAWLYDYLGS-RVD--YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1058)
Q Consensus 510 ~~~~l~s~s~d~~i~~wd~~~~~~-~~~--~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1058)
++++.|.....+.++.++.... ... .......++++.+-++++.++++. .++.+.++...
T Consensus 140 --~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D----~~gnl~~l~~~ 202 (321)
T PF03178_consen 140 --NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD----KDGNLFVLRYN 202 (321)
T ss_dssp --TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE----TTSEEEEEEE-
T ss_pred --cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc----CCCeEEEEEEC
Confidence 5899999888888886655333 222 233455788999987777666653 47778888765
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.039 Score=64.87 Aligned_cols=93 Identities=8% Similarity=0.088 Sum_probs=64.9
Q ss_pred CCceEEEeeCCCCceeEeecCCCCCceeEEEEcCC-------CCEEEEEeCCCeEEEEECCCCc--eEEE-EecCCCCCC
Q 001534 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT-------RNRFLAAGDEFQIKFWDMDNMN--MLTT-VDADGGLPA 634 (1058)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~dg~i~iwd~~~~~--~~~~-~~~~~~~~~ 634 (1058)
....|+-.|+..|+.+..+..+...+|.. +.|+ ...-+.|-.+..+..||++-.. ++.. .........
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 46679999999999999999988644444 4443 2345667778889999988532 2211 111122234
Q ss_pred cceEEEeCCCCEEEEEECCCcEEEEE
Q 001534 635 SPRLRFNKEGSLLAVTTSDNGIKILA 660 (1058)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~i~iw~ 660 (1058)
..|++-+.+| +||+|+.+|.||+||
T Consensus 580 Fs~~aTt~~G-~iavgs~~G~IRLyd 604 (794)
T PF08553_consen 580 FSCFATTEDG-YIAVGSNKGDIRLYD 604 (794)
T ss_pred ceEEEecCCc-eEEEEeCCCcEEeec
Confidence 5677766666 799999999999998
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00068 Score=62.28 Aligned_cols=79 Identities=14% Similarity=0.305 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccccchhccCCC-------chhHHHHH
Q 001534 71 KIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSARNIM 143 (1058)
Q Consensus 71 ~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~r~~l 143 (1058)
.++|+||.|.||+|+..|..++|..|+++....+.....+++++|..+....++.+++....++. .+.+-..|
T Consensus 39 ~lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s~~lL 118 (142)
T PF04494_consen 39 RLLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDSFSLL 118 (142)
T ss_dssp GGHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHHHHHH
Confidence 39999999999999999999999999998887776667788999988887777666665554544 36667778
Q ss_pred HHHHHh
Q 001534 144 LVELKK 149 (1058)
Q Consensus 144 ~~~l~~ 149 (1058)
+..|++
T Consensus 119 ~~fL~~ 124 (142)
T PF04494_consen 119 LQFLQE 124 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777776
|
The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.045 Score=46.56 Aligned_cols=101 Identities=17% Similarity=0.316 Sum_probs=65.5
Q ss_pred eEEEEEeC---CCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 001534 884 ATFLAFHP---QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960 (1058)
Q Consensus 884 i~~l~~s~---~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~ 960 (1058)
|+++++.. ++..-|++|++|..|++|+- .+.+..+. -.+.|++|+-... ..++.+-.+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R---- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR---- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcce----
Confidence 56777654 23468889999999999974 35666666 3466888887766 56788889999888876431
Q ss_pred ceeeecCCCCCCCCCCeeEEEEcC---CC-cEEEEE-eCCeEEE
Q 001534 961 SRFIQAPAGRQSPLVGETKVQFHN---DQ-THLLVV-HESQISV 999 (1058)
Q Consensus 961 ~~~~~~~~~~~~~~~~v~~~~fs~---d~-~~l~~~-~d~~i~v 999 (1058)
.-+....+. +.++++.. || .-|++| .+|.|-+
T Consensus 74 --lWRiKSK~~-----~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 74 --LWRIKSKNQ-----VTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred --eeeeccCCC-----eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 122222222 45555443 33 356777 8887753
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0034 Score=68.66 Aligned_cols=93 Identities=14% Similarity=0.260 Sum_probs=79.5
Q ss_pred CCCeeEEEEccCCcEEEEEe-CCeEEEEECCCceEEEEecCCCCCeE-EEEEeCCCCCEEEEEeCCCeEEEEEcccceeE
Q 001534 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT-FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1058)
Q Consensus 840 ~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~-~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~ 917 (1058)
...+.-+.|+|--.++|++. +|.|.++.+. .+.+.++.-|...++ +++|-| ||++||+|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 55678899999999999998 8999999998 888888887777777 999999 8999999999999999999998766
Q ss_pred EE-EeCCCCCeEEEEEcC
Q 001534 918 TK-LKGHQNRITGLAFSP 934 (1058)
Q Consensus 918 ~~-l~~h~~~v~~l~~sp 934 (1058)
.. ...-...|.++.|++
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 65 233556788888863
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=1.4 Score=52.94 Aligned_cols=244 Identities=9% Similarity=0.027 Sum_probs=121.8
Q ss_pred cCeEEEEECCCCCEEEEEeC-----CCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCC-----Cc
Q 001534 409 ISVNRCVWGPDGLMLGVAFS-----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KM 478 (1058)
Q Consensus 409 ~~v~~~~~spd~~~l~~~~~-----d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d-----~~ 478 (1058)
-.+..+.|||||++|+.+.. ...|++.|+.++..+.. .+.+ . -..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 34677899999999988633 23588999988753321 1111 1 145999999986 33433322 36
Q ss_pred EEEEEcCCC--ceeEEeeCCCCCeEEEEecccCCccEEEEEeC---CCeEEEEeCCC--CCceEEecCCCCcEEEEEEcC
Q 001534 479 IKVWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDY--LGSRVDYDAPGNWCTMMAYSA 551 (1058)
Q Consensus 479 v~vwd~~~~--~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~---d~~i~~wd~~~--~~~~~~~~~~~~~v~~~~~s~ 551 (1058)
|+.+++.++ +-...+........-..+. ..++.+++..+. ++.+.+++.+. ......+.........+. +.
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~-s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 278 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFYVSLHK-TTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY 278 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEEEEEEE-cCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC
Confidence 788888887 3333444333333312222 234455554433 35688888533 222223333333333332 22
Q ss_pred CCCEEEEEecCCCCCceEEEeeCCC-CceeEeecCC-CCCceeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEec
Q 001534 552 DGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDA 628 (1058)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~ 628 (1058)
+..++..+..+.....|...++.. ++. ..+..+ ....+..+.+. .+..+++...+|.-+++-+.. +..+..+..
T Consensus 279 -~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~ 355 (686)
T PRK10115 279 -QHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAF 355 (686)
T ss_pred -CCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecC
Confidence 344443332222344555556552 322 223333 33357777776 334455556677655544332 233444432
Q ss_pred CCCCCCcceEEEe--CCCC-EEEEEEC---CCcEEEEECCCC
Q 001534 629 DGGLPASPRLRFN--KEGS-LLAVTTS---DNGIKILANSDG 664 (1058)
Q Consensus 629 ~~~~~~v~~~~~s--~~~~-~l~~~~~---dg~i~iw~~~~~ 664 (1058)
... ..+..+.++ +++. .+++.+. -+.+..+|..++
T Consensus 356 ~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 356 DDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 111 112223344 3433 3433332 467778887765
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.057 Score=45.92 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=67.5
Q ss_pred eEEEEECC---CC-CEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCC
Q 001534 411 VNRCVWGP---DG-LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1058)
Q Consensus 411 v~~~~~sp---d~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~ 486 (1058)
|+++++.. || +.|++|+.|..|++|+-+. .+. ++. -...|+++.-...+ .++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~---Ei~-e~~~v~~L~~~~~~---~F~Y~l~NGTVGvY~~-- 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVA---EIT-ETDKVTSLCSLGGG---RFAYALANGTVGVYDR-- 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEE---EEe-cccceEEEEEcCCC---EEEEEecCCEEEEEeC--
Confidence 56666655 33 4899999999999998543 223 332 34568888887765 5889999999999983
Q ss_pred CceeEEeeCCCCCeEEEE-ecccCCc-cEEEEEeCCCeEE
Q 001534 487 GRKQYTFEGHEAPVYSVC-PHHKESI-QFIFSTAIDGKIK 524 (1058)
Q Consensus 487 ~~~~~~l~~~~~~v~~~~-~~~~~~~-~~l~s~s~d~~i~ 524 (1058)
...+...+.... +.+++ +..+.+| .-|++|-.+|.|-
T Consensus 71 ~~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 334455554333 55554 4444443 4688888888763
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.32 Score=52.26 Aligned_cols=233 Identities=14% Similarity=0.092 Sum_probs=106.9
Q ss_pred CCceEEEee-ccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCcEEEEEe--
Q 001534 783 SGLSLLALA-SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-- 859 (1058)
Q Consensus 783 ~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~~la~~s-- 859 (1058)
+.++|++.+ ..++|.+.|+.+....|.-. .+-..+.+.. -.+ -.....+..-|+|+.++++-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~----------KvIe~~ev~~-k~g----~s~PHT~Hclp~G~imIS~lGd 150 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLH----------KVIEPEEVFE-KTG----LSRPHTVHCLPDGRIMISALGD 150 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEE----------EEE-HHHHHH-HH-----EEEEEEEEE-SS--EEEEEEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceE----------eeeCHHHHHh-hcC----CCCCceeeecCCccEEEEeccC
Confidence 355666666 56899999887543332211 1111100000 000 01112333447898887762
Q ss_pred -C----CeEEEEECCCceEEEEecCCC---CCeEEEEEeCCCCCEEEEEe--------------------CCCeEEEEEc
Q 001534 860 -G----GKVSLFNMMTFKVMTMFMSPP---PAATFLAFHPQDNNIIAIGM--------------------EDSSVQIYNV 911 (1058)
Q Consensus 860 -d----g~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~~~~~lasg~--------------------~dg~I~iwd~ 911 (1058)
+ |.+.++|-++.+.+....... .--..+-|.| ..+.++|.. ...++.+||+
T Consensus 151 ~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~ 229 (461)
T PF05694_consen 151 ADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDW 229 (461)
T ss_dssp TTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEET
T ss_pred CCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEEC
Confidence 2 459999999988887776432 2345677778 666776654 2347999999
Q ss_pred ccceeEEEEeCCCC--CeEEEEEcCC--CCE-EEEEeCCCcEEEEeC-CCCccccceeeecCCCCC-----CC-------
Q 001534 912 RVDEVKTKLKGHQN--RITGLAFSPT--LNA-LVSSGADAQLCMWSI-DKWEKLKSRFIQAPAGRQ-----SP------- 973 (1058)
Q Consensus 912 ~~~~~~~~l~~h~~--~v~~l~~spd--~~~-l~s~s~D~~i~iwd~-~~~~~~~~~~~~~~~~~~-----~~------- 973 (1058)
.+.+.++++.--.. .+..|.|..+ ..+ ++.+.-.++|..|-- +.++-.....+.+..... +.
T Consensus 230 ~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~ 309 (461)
T PF05694_consen 230 STRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGA 309 (461)
T ss_dssp TTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-E
T ss_pred CCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccccccc
Confidence 99999998864332 3456667544 444 333334444544433 455544444444433210 00
Q ss_pred -CCCeeEEEEcCCCcEEEEE--eCCeEEEEeC-CCCeeeEE---ee-cc-----------------ccceEEccCCcEEE
Q 001534 974 -LVGETKVQFHNDQTHLLVV--HESQISVYDS-KLECSRSV---SF-LS-----------------LCPYVFGVSSIFLL 1028 (1058)
Q Consensus 974 -~~~v~~~~fs~d~~~l~~~--~d~~i~vwd~-~~~~~~~~---~~-~~-----------------~~~~~~s~~~~~l~ 1028 (1058)
..-|+.+..|.|+++|.++ .+|.|+.||+ +-...+.. .- .. -..+..|-||+.|.
T Consensus 310 ~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY 389 (461)
T PF05694_consen 310 VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY 389 (461)
T ss_dssp E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence 1347999999999999996 8999999999 32322222 21 11 26777888888886
Q ss_pred EEE
Q 001534 1029 STL 1031 (1058)
Q Consensus 1029 ~~~ 1031 (1058)
.++
T Consensus 390 vTn 392 (461)
T PF05694_consen 390 VTN 392 (461)
T ss_dssp EE-
T ss_pred EEe
Confidence 644
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.15 Score=52.69 Aligned_cols=165 Identities=15% Similarity=0.108 Sum_probs=97.9
Q ss_pred CCeeEEEEccCCcEEEEEe--CCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEE-cccceeE
Q 001534 841 ESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN-VRVDEVK 917 (1058)
Q Consensus 841 ~~i~~~~~s~d~~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd-~~~~~~~ 917 (1058)
..+.+.++|+|++.+|... ++.-.+|-...+.....+. ....++.-.|++ ++.+.+....+...+++. ..+++..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 3688999999999888766 5544444333333333322 233788889999 787777777666667664 3333221
Q ss_pred E-EEe--CCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCccc----cceeeecCCCCCCCCCCeeEEEEcCCCc
Q 001534 918 T-KLK--GHQNRITGLAFSPTLNALVSSG---ADAQLCMWSIDKWEKL----KSRFIQAPAGRQSPLVGETKVQFHNDQT 987 (1058)
Q Consensus 918 ~-~l~--~h~~~v~~l~~spd~~~l~s~s---~D~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~fs~d~~ 987 (1058)
. .+. .-...|+.+.+||||..+|... .++.|.+=-+.....- ........... ...+..+.|.+++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~---~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL---LSDVTDVAWSDDST 178 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc---cCcceeeeecCCCE
Confidence 1 221 1112899999999999988766 3566776655432211 11111222111 14689999999999
Q ss_pred EEEEE--eCCeEEE-EeCCCCeeeEE
Q 001534 988 HLLVV--HESQISV-YDSKLECSRSV 1010 (1058)
Q Consensus 988 ~l~~~--~d~~i~v-wd~~~~~~~~~ 1010 (1058)
+++.+ .+..+.. ..+.+.....+
T Consensus 179 L~V~~~~~~~~~~~~v~~dG~~~~~l 204 (253)
T PF10647_consen 179 LVVLGRSAGGPVVRLVSVDGGPSTPL 204 (253)
T ss_pred EEEEeCCCCCceeEEEEccCCccccc
Confidence 88885 4444444 44444443333
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.8 Score=49.35 Aligned_cols=227 Identities=14% Similarity=0.117 Sum_probs=99.3
Q ss_pred cceeEeec--C-CCCeeEEEEe-----------cCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccc
Q 001534 337 KTVVRTLN--Q-GSNVMSMDFH-----------PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1058)
Q Consensus 337 ~~~~~~~~--h-~~~V~~~~fs-----------pdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1058)
.+++..+. + .++....-|+ .+.++|++-|-.++.|.|.|+.+.....+ -+++.+ .. .
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~-l~KvIe---~~-----e 122 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPR-LHKVIE---PE-----E 122 (461)
T ss_dssp TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-E-EEEEE----HH-----H
T ss_pred ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCc-eEeeeC---HH-----H
Confidence 34555544 3 3466666665 23444555555889999999986542211 011111 00 0
Q ss_pred ccc-CCCcCeEEEEECCCCCEEEEE--eC----CCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEc-
Q 001534 403 LLN-DAAISVNRCVWGPDGLMLGVA--FS----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG- 474 (1058)
Q Consensus 403 ~~~-~h~~~v~~~~~spd~~~l~~~--~~----d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~- 474 (1058)
+.. ..-..-..+---|+|+.++++ .. -|-+.+.|-++-+.......-.+....-.++.|.|..+ +++|..
T Consensus 123 v~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeW 200 (461)
T PF05694_consen 123 VFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEW 200 (461)
T ss_dssp HHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B-
T ss_pred HHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEecc
Confidence 010 001112223334688888875 22 24577777766544432211112233456777888766 677754
Q ss_pred -------------------CCCcEEEEEcCCCceeEEeeCCC--CCeEEEEecccCCccEEEEEe-CCCeEEEEeC-CCC
Q 001534 475 -------------------DDKMIKVWDVVAGRKQYTFEGHE--APVYSVCPHHKESIQFIFSTA-IDGKIKAWLY-DYL 531 (1058)
Q Consensus 475 -------------------~d~~v~vwd~~~~~~~~~l~~~~--~~v~~~~~~~~~~~~~l~s~s-~d~~i~~wd~-~~~ 531 (1058)
...++.+||+.+.+.++++.--. ..+..+.|..+++..+=++++ -..+|..|-- +.+
T Consensus 201 g~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g 280 (461)
T PF05694_consen 201 GAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG 280 (461)
T ss_dssp --HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT
T ss_pred CChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCC
Confidence 23589999999999999886533 245567776666554444433 3445554433 222
Q ss_pred C----ceEEecCC-----------------CCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCC
Q 001534 532 G----SRVDYDAP-----------------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1058)
Q Consensus 532 ~----~~~~~~~~-----------------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1058)
+ .+..+... ..-++.+.+|.|.++|+.... ..|.++.||+...
T Consensus 281 ~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W---~~GdvrqYDISDP 344 (461)
T PF05694_consen 281 EWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNW---LHGDVRQYDISDP 344 (461)
T ss_dssp EEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEET---TTTEEEEEE-SST
T ss_pred CeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcc---cCCcEEEEecCCC
Confidence 1 11122111 235789999999999998775 6888999999763
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0047 Score=41.60 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=34.0
Q ss_pred ceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 001534 871 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1058)
Q Consensus 871 ~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd 910 (1058)
++....+..|...|.++.|++ ++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 355666778889999999999 789999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.84 Score=50.06 Aligned_cols=82 Identities=12% Similarity=0.208 Sum_probs=57.4
Q ss_pred CCCeeEEEEccCCcEEEEEe-CCeEEEEECCCceEEEEecCCCCC-eEEEEEeCCCC----------------C-EEEEE
Q 001534 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDN----------------N-IIAIG 900 (1058)
Q Consensus 840 ~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~----------------~-~lasg 900 (1058)
...+.+++.+|++++.|+.+ -|.|.++|+.++..++.++|-.+. +.-+....... . +++.+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 45688999999999888876 489999999999988888875432 22121111011 1 33456
Q ss_pred eCCCeEEEEEcccceeEEEEe
Q 001534 901 MEDSSVQIYNVRVDEVKTKLK 921 (1058)
Q Consensus 901 ~~dg~I~iwd~~~~~~~~~l~ 921 (1058)
-.-|.|.||.+..|..+..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 677889999998887766654
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.17 Score=58.90 Aligned_cols=200 Identities=10% Similarity=0.042 Sum_probs=102.6
Q ss_pred cCeEEEEECCCCCEEEEEe------CCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCc-EEE
Q 001534 409 ISVNRCVWGPDGLMLGVAF------SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-IKV 481 (1058)
Q Consensus 409 ~~v~~~~~spd~~~l~~~~------~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~-v~v 481 (1058)
..+.+.++||||+.+|... .|+.-.||-...+...... ..+ ...+.-.|+|||+ .+.+.+.... +++
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l--t~g--~~~t~PsWspDG~--~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV--LEG--HSLTRPSWSLDAD--AVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee--ecC--CCCCCceECCCCC--ceEEEecCcceEEE
Confidence 4688999999999888765 2444444443323222321 222 2378899999988 4555442211 111
Q ss_pred EEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEec
Q 001534 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1058)
Q Consensus 482 wd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1058)
.+- ...+.+.+.+++.+.... .....|..+.|||||..++...
T Consensus 424 ~~~---------------------------------~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~- 466 (591)
T PRK13616 424 IRD---------------------------------PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII- 466 (591)
T ss_pred ecc---------------------------------CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-
Confidence 110 112233333443332222 2244688999999999988765
Q ss_pred CCCCCceEEE---eeCCCCce-e---EeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEecCCCCC
Q 001534 562 SKEGESHLVE---WNESEGAI-K---RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLP 633 (1058)
Q Consensus 562 ~~~~~~~i~~---wd~~~~~~-~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~ 633 (1058)
+++|++ -....|.. + ..+.......+..+.|..++..+ ++..++...+|.+.- |.....+....-..
T Consensus 467 ----~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~ 541 (591)
T PRK13616 467 ----GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSA 541 (591)
T ss_pred ----CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccC
Confidence 345666 44344431 1 11222222235778999988754 555444444454331 22222222222233
Q ss_pred CcceEEEeCCCCEEEEEECCCcEEE
Q 001534 634 ASPRLRFNKEGSLLAVTTSDNGIKI 658 (1058)
Q Consensus 634 ~v~~~~~s~~~~~l~~~~~dg~i~i 658 (1058)
.+..++-++ ..++....+|.+.+
T Consensus 542 ~v~~vaa~~--~~iyv~~~~g~~~l 564 (591)
T PRK13616 542 PVVAVAASP--STVYVTDARAVLQL 564 (591)
T ss_pred ceEEEecCC--ceEEEEcCCceEEe
Confidence 455666555 24555566654433
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.036 Score=59.66 Aligned_cols=146 Identities=12% Similarity=0.071 Sum_probs=98.0
Q ss_pred CCCCEEE-EEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEE-----EEEcCCCcEEEEEcCCC-c-e
Q 001534 418 PDGLMLG-VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI-----VTCGDDKMIKVWDVVAG-R-K 489 (1058)
Q Consensus 418 pd~~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l-----~s~~~d~~v~vwd~~~~-~-~ 489 (1058)
.+.++|+ ++.....++-.|++.|+.+. ++.-|.. |+-+.+.|+.+.-.+ +.|-.|..|.-||.+-. . .
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k 418 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK 418 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce
Confidence 3444444 44455668888999998777 4444554 777888887652111 23556889999998632 2 2
Q ss_pred eEEeeCCC----CCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001534 490 QYTFEGHE----APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1058)
Q Consensus 490 ~~~l~~~~----~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1058)
+..-++|+ ....|.+-. ++ .+++.||.+|.||+||--.......+.+-+.+|..+..+.||+++++.+
T Consensus 419 l~~~q~kqy~~k~nFsc~aTT--~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc----- 490 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFATT--ES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC----- 490 (644)
T ss_pred eeeeeccccccccccceeeec--CC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----
Confidence 22223332 234444433 44 5999999999999999743344456777888999999999999998776
Q ss_pred CceEEEeeCC
Q 001534 566 ESHLVEWNES 575 (1058)
Q Consensus 566 ~~~i~~wd~~ 575 (1058)
+..+.+.+..
T Consensus 491 ~tyLlLi~t~ 500 (644)
T KOG2395|consen 491 KTYLLLIDTL 500 (644)
T ss_pred ccEEEEEEEe
Confidence 6667777753
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.11 Score=56.47 Aligned_cols=176 Identities=14% Similarity=0.087 Sum_probs=104.6
Q ss_pred cEEEEEcCCCceeEEeeCC-CCCeEEEE---ecccC--CccEEEEEeC----------CCeEEEEeCCCC----CceE--
Q 001534 478 MIKVWDVVAGRKQYTFEGH-EAPVYSVC---PHHKE--SIQFIFSTAI----------DGKIKAWLYDYL----GSRV-- 535 (1058)
Q Consensus 478 ~v~vwd~~~~~~~~~l~~~-~~~v~~~~---~~~~~--~~~~l~s~s~----------d~~i~~wd~~~~----~~~~-- 535 (1058)
.|++.|..+.+.+.++.-. ...+.+++ +..+. ...+++.|+. .|.|.++++... ....
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5777777777666544321 22344443 22111 2367777753 288999999884 1111
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCc-eeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEE
Q 001534 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1058)
Q Consensus 536 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 614 (1058)
.-....++|++++-- ++. ++++. .+.|++|++...+ ....-..+....+.++.. .++++++|.....+.+
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~-----g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAV-----GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEE-----TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEE
T ss_pred EEEeecCcceEhhhh-CCE-EEEee-----cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEE
Confidence 112235678888765 444 55543 4669999998777 444433333224444444 4679999998888887
Q ss_pred EECCC-CceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECC
Q 001534 615 WDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1058)
Q Consensus 615 wd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1058)
+.... ...+..+........++++.|-++++.++++..+|.+.++...
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 75443 3334444333333467888888666799999999999999875
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.57 E-value=1 Score=45.55 Aligned_cols=184 Identities=10% Similarity=0.103 Sum_probs=115.2
Q ss_pred CCCeeEEEEccCCcEEEEEe-CC--eEEEEECCCceEEEEecCCCC-CeEEEEEeCCCCCEEEEEeCCCeEEEEEcccce
Q 001534 840 EESAACIALSKNDSYVMSAS-GG--KVSLFNMMTFKVMTMFMSPPP-AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915 (1058)
Q Consensus 840 ~~~i~~~~~s~d~~~la~~s-dg--~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~ 915 (1058)
......+.|..||.++-+.+ -| .|+.+|+.+++......-... ---.++... +++..-.-.++...+||..+.+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccce
Confidence 44456788888888887776 44 599999999988766543322 223455553 4566666788999999999999
Q ss_pred eEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEE-eC
Q 001534 916 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HE 994 (1058)
Q Consensus 916 ~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~-~d 994 (1058)
.+.++.- .+.-..|+ .|++.|+..+....++++|.++.+......+....... ..+.-+.|- +|...|=- ..
T Consensus 122 ~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv---~~LNELE~i-~G~IyANVW~t 194 (264)
T PF05096_consen 122 KIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV---SNLNELEYI-NGKIYANVWQT 194 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE------EEEEEEE-TTEEEEEETTS
T ss_pred EEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEEC---CCcEeEEEE-cCEEEEEeCCC
Confidence 8888763 35566777 46777777777778999999887766554443222111 345667775 56544444 67
Q ss_pred CeEEEEeC-CCCeeeEEeecc-----------------ccceEEccCCcEEEEEEC
Q 001534 995 SQISVYDS-KLECSRSVSFLS-----------------LCPYVFGVSSIFLLSTLT 1032 (1058)
Q Consensus 995 ~~i~vwd~-~~~~~~~~~~~~-----------------~~~~~~s~~~~~l~~~~~ 1032 (1058)
..|..-|. ++.....+.... .+-+++.+.+..++..++
T Consensus 195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 77888888 777777665411 556777666666655554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.57 E-value=1.6 Score=48.44 Aligned_cols=153 Identities=10% Similarity=0.016 Sum_probs=88.9
Q ss_pred CCeEEEEEecCCCceEEEEEc--CCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCC--ccEEEEEeCCCeEEEEeCC
Q 001534 454 GGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES--IQFIFSTAIDGKIKAWLYD 529 (1058)
Q Consensus 454 ~~v~~~~fs~d~~~~~l~s~~--~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~--~~~l~s~s~d~~i~~wd~~ 529 (1058)
.++..++|. ||++ +++|.- .+|.+++=| .+.+. .-..|..++|.|... ...+++.-....|.+|.+.
T Consensus 20 HPvhGlaWT-DGkq-VvLT~L~l~~gE~kfGd---s~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQ-VVLTDLQLHNGEPKFGD---SKVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCE-EEEEeeeeeCCccccCC---ccEee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 468899996 7776 455432 233333322 12233 334588899987532 2357777788999999876
Q ss_pred CC-----CceEEecCCC---C--cEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCC
Q 001534 530 YL-----GSRVDYDAPG---N--WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599 (1058)
Q Consensus 530 ~~-----~~~~~~~~~~---~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~ 599 (1058)
.. +.......+- - --..+.|+|....|++-.. ...-.+++.+.....-...-...+.|.|.+|.+|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~----~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~D 166 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA----RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKD 166 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec----CceeEeeeeeeCCceEEEeccCCceEEEEEecCc
Confidence 31 1111111111 1 1235679999888876653 2222345554332222222233447999999999
Q ss_pred CCEEEEE-eCCCeEEEEECCC
Q 001534 600 RNRFLAA-GDEFQIKFWDMDN 619 (1058)
Q Consensus 600 ~~~l~~~-~~dg~i~iwd~~~ 619 (1058)
|++|+++ |..=.-++||-..
T Consensus 167 G~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 167 GQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CCEEEEEeCCeEEEEEecCch
Confidence 9998875 4445578998654
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=3 Score=50.20 Aligned_cols=244 Identities=10% Similarity=0.033 Sum_probs=121.2
Q ss_pred CeeEEEEecCCCeEEEEEeCCC----cEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEE
Q 001534 348 NVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1058)
Q Consensus 348 ~V~~~~fspdg~~lla~g~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l 423 (1058)
.+..+.+||||+.++.+-+.+| .|++-|+.+|+.+.. . +.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-~-----------------i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-L-----------------LDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-c-----------------ccC---cceEEEEeeCCCEE
Confidence 5778899999985554444433 688999988864321 0 111 11469999999977
Q ss_pred EEEeCC------CeEEEEEecCCCceeeeeeeecCcCCeE-EEEEecCCCceEEEEEc-CCCcEEEEEcC--CCceeEEe
Q 001534 424 GVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVN-DIAFAHPNKQLCIVTCG-DDKMIKVWDVV--AGRKQYTF 493 (1058)
Q Consensus 424 ~~~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~v~-~~~fs~d~~~~~l~s~~-~d~~v~vwd~~--~~~~~~~l 493 (1058)
+....+ ..|..+++.++..-. ...+........ .+..+.|++.+++.+.+ .++.+.+++.. ++.....+
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d-~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQD-ELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHC-eEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 766442 357788888762111 012222222333 33344477753322222 34578888843 34432222
Q ss_pred eCCCCCeEEEEecccCCccEEEEEeC---CCeEEEEeCCCCCc-eEEecCC-CCcEEEEEEcCCCCEEEEEecCCCCCce
Q 001534 494 EGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLGS-RVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1058)
Q Consensus 494 ~~~~~~v~~~~~~~~~~~~~l~s~s~---d~~i~~wd~~~~~~-~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1058)
.........+. +. .+ .+++.... ...|...++..... ...+... ...+..+.+. +++|+.... .++...
T Consensus 266 ~~~~~~~~~~~-~~-~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~~~ 339 (686)
T PRK10115 266 PRRKDHEYSLD-HY-QH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGLTS 339 (686)
T ss_pred ECCCCCEEEEE-eC-CC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCEEE
Confidence 22222222222 21 22 23333222 22344445442222 2233332 3367777776 445554443 124555
Q ss_pred EEEeeCCCCceeEeec-CCCCCceeEEEEc--CCCC-EEEEEe---CCCeEEEEECCCCc
Q 001534 569 LVEWNESEGAIKRTYS-GFRKRSLGVVQFD--TTRN-RFLAAG---DEFQIKFWDMDNMN 621 (1058)
Q Consensus 569 i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~--~~~~-~l~~~~---~dg~i~iwd~~~~~ 621 (1058)
+++++..++. +..+. .... .+..+.++ +++. .+++.+ .-+.+..+|+.+++
T Consensus 340 l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 340 LRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 7777765433 33333 1111 22333344 3444 444433 45778889988765
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.089 Score=61.93 Aligned_cols=142 Identities=13% Similarity=0.122 Sum_probs=95.0
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEeeCCCCC-eEEEEeccc---CCccEEEEEeCCCeEEEEeCCCCCceEEe-----cC
Q 001534 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP-VYSVCPHHK---ESIQFIFSTAIDGKIKAWLYDYLGSRVDY-----DA 539 (1058)
Q Consensus 469 ~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~-v~~~~~~~~---~~~~~l~s~s~d~~i~~wd~~~~~~~~~~-----~~ 539 (1058)
+|........|+-.|++.|+.+..+..|... |..++-... -...-.+.|-.++.+..||.+..+..... -.
T Consensus 496 il~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~ 575 (794)
T PF08553_consen 496 ILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS 575 (794)
T ss_pred EeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccc
Confidence 4444456678999999999999999887754 666653211 01234667778889999999976532211 12
Q ss_pred CCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001534 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1058)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 617 (1058)
.....+|++-+.+|.. |+|+ .+|.|++||--..+....+.+... +|..+..+.||+++++.+.. .+.+++.
T Consensus 576 ~~~~Fs~~aTt~~G~i-avgs----~~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 576 SKNNFSCFATTEDGYI-AVGS----NKGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred cCCCceEEEecCCceE-EEEe----CCCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 3446788888777754 4554 377799999433333334455444 89999999999999887754 4556553
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.31 Score=56.72 Aligned_cols=234 Identities=11% Similarity=0.018 Sum_probs=121.9
Q ss_pred CCCEEEEEeCC------CeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCC------CcEEEEEcCC
Q 001534 419 DGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDVVA 486 (1058)
Q Consensus 419 d~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d------~~v~vwd~~~ 486 (1058)
.+..+++|+.+ ..+..||..++.-.. ...+. +...-.++++.. +. +.++||.| .++..||..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 45566677665 357888888763221 11222 222344555543 44 78888888 3677888887
Q ss_pred CceeE--EeeCCCCCeEEEEecccCCccEEEEEeCCCe-----EEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEE
Q 001534 487 GRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDGK-----IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1058)
Q Consensus 487 ~~~~~--~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~-----i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1058)
++... .+....... +++. -+|.+.+.|+.||. +-.||..+.+-...-......-..-...-+|...++|
T Consensus 359 ~~W~~~a~M~~~R~~~-~v~~---l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDF-GVAV---LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred CceeccCCccCccccc-eeEE---ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence 76443 111111111 1111 14578888988865 6677766544333222222111112223467777777
Q ss_pred ecCCCCC--ceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCCC-----eEEEEECCCCceEEEEecCCCC
Q 001534 560 GTSKEGE--SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVDADGGL 632 (1058)
Q Consensus 560 ~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~ 632 (1058)
|.++..+ ..+..||..++.-...-.-.....-..++. -++...+.||.|+ +|..||..+.+-...-......
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r 513 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR 513 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc
Confidence 7554432 678899988876433322222211122322 2466677787666 3777888776544442222111
Q ss_pred CCcceEEEeCCCCEEEEEECCC-----cEEEEECCCC
Q 001534 633 PASPRLRFNKEGSLLAVTTSDN-----GIKILANSDG 664 (1058)
Q Consensus 633 ~~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~ 664 (1058)
..+..+ .-++...++|+.|| +|..||..++
T Consensus 514 s~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 514 SAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccEE--EECCEEEEEecccCccccceeEEcCCCCC
Confidence 111112 22566777777765 4555655544
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.98 Score=45.68 Aligned_cols=168 Identities=12% Similarity=0.089 Sum_probs=109.8
Q ss_pred cCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEc
Q 001534 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1058)
Q Consensus 405 ~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~ 484 (1058)
.+-...|.++.|+|+.+.|.+......-.||=..+|+.++.. .+.+ -.....+.+..+|. +.++--.++.+.++.+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti-PL~g-~~DpE~Ieyig~n~--fvi~dER~~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI-PLTG-FSDPETIEYIGGNQ--FVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe-cccc-cCChhHeEEecCCE--EEEEehhcceEEEEEE
Confidence 445556999999999999998888887778877777776644 3444 23356788888887 7888888899999877
Q ss_pred CCCceeEE-------ee--CC-CCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEe---cC-------CCCcE
Q 001534 485 VAGRKQYT-------FE--GH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DA-------PGNWC 544 (1058)
Q Consensus 485 ~~~~~~~~-------l~--~~-~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~---~~-------~~~~v 544 (1058)
..+..+.. +. .+ +.....++|.+.. +.|+.+-+-.-+.+|.+......... .. .-..+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~--~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD--HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCC--ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 66532221 11 12 5567788998654 67888877777777765532211111 01 12256
Q ss_pred EEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEe
Q 001534 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1058)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1058)
+++.|.+....+++-+ ++++.+...|.. |..+..
T Consensus 236 Sgl~~~~~~~~LLVLS---~ESr~l~Evd~~-G~~~~~ 269 (316)
T COG3204 236 SGLEFNAITNSLLVLS---DESRRLLEVDLS-GEVIEL 269 (316)
T ss_pred ccceecCCCCcEEEEe---cCCceEEEEecC-CCeeee
Confidence 7888887666666555 246667777765 444433
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.058 Score=63.25 Aligned_cols=104 Identities=18% Similarity=0.225 Sum_probs=77.7
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCC
Q 001534 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1058)
Q Consensus 419 d~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~ 498 (1058)
-+..++.|+..|.+-..|+.+. +.....-..-.++|++++|+.+|. .++.|-.+|.|.+||+..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4567889999999998888764 221112223467899999999999 789999999999999999999999988888
Q ss_pred CeEEEEeccc-CCccEEEEEeCCCeEEEEeC
Q 001534 499 PVYSVCPHHK-ESIQFIFSTAIDGKIKAWLY 528 (1058)
Q Consensus 499 ~v~~~~~~~~-~~~~~l~s~s~d~~i~~wd~ 528 (1058)
+.+++-++.. +++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 8877765432 23345777777776 4543
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.23 E-value=1.6 Score=44.14 Aligned_cols=185 Identities=14% Similarity=0.046 Sum_probs=115.2
Q ss_pred CeEEEEEecCCCceEEEEEcCCC--cEEEEEcCCCceeEEeeCC-CCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCC
Q 001534 455 GVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1058)
Q Consensus 455 ~v~~~~fs~d~~~~~l~s~~~d~--~v~vwd~~~~~~~~~l~~~-~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~ 531 (1058)
-...+.|..+|. ++-+.+.-| .|+.+|+.+|+......-. ..--..++.. ++ .+..-.-.++...+||..+.
T Consensus 46 FTQGL~~~~~g~--LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d-~l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 46 FTQGLEFLDDGT--LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GD-KLYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp EEEEEEEEETTE--EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TT-EEEEEESSSSEEEEEETTTT
T ss_pred cCccEEecCCCE--EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CC-EEEEEEecCCeEEEEccccc
Confidence 356788877776 677777666 7999999999877654322 2222333333 22 45556667899999999988
Q ss_pred CceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCC----CceeEEEEcCCCCEEEEEe
Q 001534 532 GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAAG 607 (1058)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~ 607 (1058)
+....+... +.=..++ .|++.|+.. |+...|+.+|..+.+..+.+....+ ..++-+.+- +|...+=.-
T Consensus 121 ~~~~~~~y~-~EGWGLt--~dg~~Li~S----DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW 192 (264)
T PF05096_consen 121 KKIGTFPYP-GEGWGLT--SDGKRLIMS----DGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW 192 (264)
T ss_dssp EEEEEEE-S-SS--EEE--ECSSCEEEE-----SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET
T ss_pred eEEEEEecC-CcceEEE--cCCCEEEEE----CCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC
Confidence 777666543 2334555 566777665 3577899999988877776654432 135566665 454444355
Q ss_pred CCCeEEEEECCCCceEEEEecC---------C----CCCCcceEEEeCCCCEEEEEEC
Q 001534 608 DEFQIKFWDMDNMNMLTTVDAD---------G----GLPASPRLRFNKEGSLLAVTTS 652 (1058)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~---------~----~~~~v~~~~~s~~~~~l~~~~~ 652 (1058)
....|...|..+|+....+... . ...-.+.+|+.|....+.+.+.
T Consensus 193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 6678888999999998877421 0 1234789999997766655543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.014 Score=56.00 Aligned_cols=104 Identities=17% Similarity=0.213 Sum_probs=71.6
Q ss_pred CcEEEEEe-CCeEEEEECCCc-eEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCC-CCeE
Q 001534 852 DSYVMSAS-GGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-NRIT 928 (1058)
Q Consensus 852 ~~~la~~s-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~-~~v~ 928 (1058)
+.-+++|. +|.|.+|+..-. .....+..-...|.++.-.-+++.+..+++.||.|+.|++.-++.+...-.|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 44566665 999999988621 11111111122333332222356688999999999999999998888888888 6777
Q ss_pred EEEEcCCCCEEEEE--eCCCcEEEEeCCC
Q 001534 929 GLAFSPTLNALVSS--GADAQLCMWSIDK 955 (1058)
Q Consensus 929 ~l~~spd~~~l~s~--s~D~~i~iwd~~~ 955 (1058)
.+..+..++.++++ |.|..++.|+++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 77777777888887 8888888888865
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.20 E-value=2.7 Score=46.40 Aligned_cols=282 Identities=10% Similarity=0.105 Sum_probs=148.1
Q ss_pred ecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECC-----CCCEEEEEeCC
Q 001534 355 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-----DGLMLGVAFSK 429 (1058)
Q Consensus 355 spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-----d~~~l~~~~~d 429 (1058)
+++++..+++|+..|.++||+...++......+ .-..-+.+|..++..+ +...||+ =.-
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~ll---------------lE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP 96 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLL---------------LETQLKDPILQVECGKFVSGSEDLQLAV-LHP 96 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCccEE---------------EEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence 345556788999999999999965442211000 0122345777776543 2335555 456
Q ss_pred CeEEEEEecCCC-------ceeeeeeeecCcC--CeEEEEEecCCC---ceEEEEEcCCCcEEEEEcCCCceeEEeeCCC
Q 001534 430 HIVHLYTYNPTG-------ELRQHLEIDAHVG--GVNDIAFAHPNK---QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1058)
Q Consensus 430 ~~i~vwd~~~~~-------~~~~~~~~~~h~~--~v~~~~fs~d~~---~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~ 497 (1058)
..+.||.+.... ... ...+..|.- ....++.-|-|. +-++..-+.||.+.+++-+.-...+.+.+ .
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~-L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ 174 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQ-LELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F 174 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEE-EEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence 678888873221 111 112223332 233344333221 22788899999999999554433344433 2
Q ss_pred CCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCc-----------------------eEEecCCCC--cEEEEEEcCC
Q 001534 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-----------------------RVDYDAPGN--WCTMMAYSAD 552 (1058)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~-----------------------~~~~~~~~~--~v~~~~~s~~ 552 (1058)
--...+++.+.. +.|++++.+..+..|....... ...+..... .+..+.++..
T Consensus 175 llPgPl~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~ 252 (418)
T PF14727_consen 175 LLPGPLCYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSS 252 (418)
T ss_pred CCCcCeEEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCC
Confidence 222334455444 6889999898988886532100 001111111 2333344434
Q ss_pred CCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcC----CC---CEEEEEeCCCeEEEEECCCCceEEE
Q 001534 553 GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT----TR---NRFLAAGDEFQIKFWDMDNMNMLTT 625 (1058)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1058)
...+++-+ ...+.+.+. +|......+-.-. +.....|.. ++ ..++.++.++++.||.= .+++..
T Consensus 253 ~~~IvvLg-----er~Lf~l~~-~G~l~~~krLd~~-p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~Ws 323 (418)
T PF14727_consen 253 ESDIVVLG-----ERSLFCLKD-NGSLRFQKRLDYN-PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWS 323 (418)
T ss_pred CceEEEEe-----cceEEEEcC-CCeEEEEEecCCc-eeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEe
Confidence 44555544 556777775 3654443332211 222222221 22 24888999999999853 334444
Q ss_pred EecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCc
Q 001534 626 VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1058)
Q Consensus 626 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 665 (1058)
.........+.-..|..-...|++-+.+|.+.+-=+.|..
T Consensus 324 A~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 324 AQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred cCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 3332221112222233335578888899999887676653
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.019 Score=40.57 Aligned_cols=33 Identities=21% Similarity=0.509 Sum_probs=29.5
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcc
Q 001534 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE 380 (1058)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~ 380 (1058)
...|.+++|+|... ++|.|+.+|.|.|+.+ +++
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCc
Confidence 46799999999997 9999999999999999 444
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.13 E-value=2.2 Score=44.81 Aligned_cols=155 Identities=12% Similarity=0.044 Sum_probs=79.3
Q ss_pred cCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe-CCCC
Q 001534 878 MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS-IDKW 956 (1058)
Q Consensus 878 ~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd-~~~~ 956 (1058)
....+.+..+..++ ||+++|++..-....-||--...-...-+.-...|.+|.|+||+.+.+.+ ..|.|+.=+ ....
T Consensus 141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 34456788899999 99999887665555677743222222233356789999999998876644 888888777 2222
Q ss_pred ccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEEeCCeEEEEeCCCCeeeEEee-----ccccceEEccCCcEEEEEE
Q 001534 957 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSVSF-----LSLCPYVFGVSSIFLLSTL 1031 (1058)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~~d~~i~vwd~~~~~~~~~~~-----~~~~~~~~s~~~~~l~~~~ 1031 (1058)
+.-.......... .-.+..++|.+++...++|..|.+.+=.=.++.-..-.. ..+..+.|..+.+-++. +
T Consensus 219 ~~w~~~~~~~~~~----~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G 293 (302)
T PF14870_consen 219 ETWSEPIIPIKTN----GYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-G 293 (302)
T ss_dssp EEE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--
T ss_pred cccccccCCcccC----ceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-C
Confidence 2111111111111 134899999999999999888866542223332222221 22556667665555555 7
Q ss_pred CCCeEEEE
Q 001534 1032 TKLSVAVH 1039 (1058)
Q Consensus 1032 ~d~~v~vw 1039 (1058)
.++.+.-|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 77777655
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.12 E-value=1.6 Score=52.38 Aligned_cols=205 Identities=12% Similarity=0.057 Sum_probs=117.1
Q ss_pred CCEEEEEeCCCeEEEEEecCCCceeeeeeeecCc-----CCeEEEEEec----------------CCCceEEEEEcCCCc
Q 001534 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV-----GGVNDIAFAH----------------PNKQLCIVTCGDDKM 478 (1058)
Q Consensus 420 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~-----~~v~~~~fs~----------------d~~~~~l~s~~~d~~ 478 (1058)
+..|.+++.++.|.-.|..+|+.+-....-.... ...+.+++.. .+. .++.++.|+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~--rV~~~T~Dg~ 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR--RIILPTSDAR 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCC--EEEEecCCCe
Confidence 4456666667777777777776544221100000 0112233321 233 5777888999
Q ss_pred EEEEEcCCCceeEEeeCCCCCeE-------------EEEecccCCccEEEEEeC----------CCeEEEEeCCCCCceE
Q 001534 479 IKVWDVVAGRKQYTFEGHEAPVY-------------SVCPHHKESIQFIFSTAI----------DGKIKAWLYDYLGSRV 535 (1058)
Q Consensus 479 v~vwd~~~~~~~~~l~~~~~~v~-------------~~~~~~~~~~~~l~s~s~----------d~~i~~wd~~~~~~~~ 535 (1058)
+.-.|.++|+.+..+.. .+.|. .+.-.|-=.+..++.|+. +|.|+-+|.++++...
T Consensus 272 LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 272 LIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 99999999999877642 22110 000001101245666643 6889999999998887
Q ss_pred EecCC---------CC--------cE-EEEEEcCCCCEEEEEec--------------CCCCCceEEEeeCCCCceeEee
Q 001534 536 DYDAP---------GN--------WC-TMMAYSADGTRLFSCGT--------------SKEGESHLVEWNESEGAIKRTY 583 (1058)
Q Consensus 536 ~~~~~---------~~--------~v-~~~~~s~~~~~l~~~~~--------------~~~~~~~i~~wd~~~~~~~~~~ 583 (1058)
.+... .+ .+ ..+++.+....++.... ++.-.+.|.-.|.++|+....+
T Consensus 351 ~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 351 AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF 430 (764)
T ss_pred EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence 65421 00 11 23455555555554321 1112356778889999988887
Q ss_pred cC-CCCC-------ceeEEEEcC-CCC---EEEEEeCCCeEEEEECCCCceEEEEe
Q 001534 584 SG-FRKR-------SLGVVQFDT-TRN---RFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1058)
Q Consensus 584 ~~-~~~~-------~v~~~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1058)
+. |++. ...-+.+.. +|+ .++.++.+|.+++.|.++|+.+....
T Consensus 431 Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 431 QTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 65 2210 111122322 453 67888899999999999998887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=1.1 Score=45.28 Aligned_cols=169 Identities=11% Similarity=0.165 Sum_probs=112.2
Q ss_pred CCCeeEEEEccCCcEEEEEeC-CeEEEEECCCceEEEEecCC-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeE
Q 001534 840 EESAACIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSP-PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1058)
Q Consensus 840 ~~~i~~~~~s~d~~~la~~sd-g~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~ 917 (1058)
...+.++.|+|+.+.|.+..+ ..-.|+=...|+.++++.-. -.....+++.. ++++.++--.++.+.++.++....+
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCCccE
Confidence 445999999999998887764 44444444568888886532 23456688888 8888888888889999888755221
Q ss_pred E-------EE--eCC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCC----CCCeeEEEEc
Q 001534 918 T-------KL--KGH-QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSP----LVGETKVQFH 983 (1058)
Q Consensus 918 ~-------~l--~~h-~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~fs 983 (1058)
. .+ ..+ +..--.++|.|.++.|..+=+-.-+.|+.+..+... ........+... ...|..+.|.
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~--l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS--LSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc--cccccccCcccccceEeeccccceec
Confidence 1 11 122 566788999999999998888888888877643311 112222222211 2457788998
Q ss_pred CCCcEEEE-E-eCCeEEEEeCCCCeeeEEe
Q 001534 984 NDQTHLLV-V-HESQISVYDSKLECSRSVS 1011 (1058)
Q Consensus 984 ~d~~~l~~-~-~d~~i~vwd~~~~~~~~~~ 1011 (1058)
+....|++ + .++.+...|.+++.+..+.
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G~~~~~ls 271 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSGEVIELLS 271 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCCCeeeeEE
Confidence 76555555 6 6667777787777655443
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.47 Score=45.78 Aligned_cols=89 Identities=11% Similarity=0.118 Sum_probs=65.4
Q ss_pred eEEEEccCCcEEEEEe--CCeEEEEE--CCCceE-----EEEecC----CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 001534 844 ACIALSKNDSYVMSAS--GGKVSLFN--MMTFKV-----MTMFMS----PPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1058)
Q Consensus 844 ~~~~~s~d~~~la~~s--dg~i~iwd--~~~~~~-----~~~~~~----~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd 910 (1058)
..++|+.|.+.+..-. +-+|.-|| ..+|.. +..++. .......++... +|.+.++.-..|+|...|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVD 239 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEEC
Confidence 4688998888777665 67787787 555532 222332 122334556666 788888888888999999
Q ss_pred cccceeEEEEeCCCCCeEEEEEc
Q 001534 911 VRVDEVKTKLKGHQNRITGLAFS 933 (1058)
Q Consensus 911 ~~~~~~~~~l~~h~~~v~~l~~s 933 (1058)
..+|+.+.+++-....|++++|-
T Consensus 240 p~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEec
Confidence 99999999998889999999995
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.19 Score=54.32 Aligned_cols=142 Identities=12% Similarity=0.138 Sum_probs=95.7
Q ss_pred ceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEE-----EEEeCCCeEEEEeCCCCCc-eEEe-cC
Q 001534 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-----FSTAIDGKIKAWLYDYLGS-RVDY-DA 539 (1058)
Q Consensus 467 ~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l-----~s~s~d~~i~~wd~~~~~~-~~~~-~~ 539 (1058)
.+++.++.....++--|++.|+.+..+.-+.. |+-+.+.|+..+..+ +.|-.|..|.-||.+-... .... ..
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 34666777777889999999999999887766 777777766554433 4456788899999986544 2211 11
Q ss_pred ----CCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCce-eEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEE
Q 001534 540 ----PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1058)
Q Consensus 540 ----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 614 (1058)
......|.+-..+| ++++++. +|.|++||. .+.. ...+++... +|..+..+.+|+++++.+. ..+.+
T Consensus 425 kqy~~k~nFsc~aTT~sG-~IvvgS~----~GdIRLYdr-i~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc~-tyLlL 496 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTESG-YIVVGSL----KGDIRLYDR-IGRRAKTALPGLGD-AIKHVDVTADGKWILATCK-TYLLL 496 (644)
T ss_pred cccccccccceeeecCCc-eEEEeec----CCcEEeehh-hhhhhhhcccccCC-ceeeEEeeccCcEEEEecc-cEEEE
Confidence 12355666665555 5666653 677999997 4443 344555555 8999999999998887764 34555
Q ss_pred EEC
Q 001534 615 WDM 617 (1058)
Q Consensus 615 wd~ 617 (1058)
.++
T Consensus 497 i~t 499 (644)
T KOG2395|consen 497 IDT 499 (644)
T ss_pred EEE
Confidence 443
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.04 E-value=2.9 Score=45.34 Aligned_cols=113 Identities=21% Similarity=0.282 Sum_probs=58.8
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCC----CCEE
Q 001534 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GLML 423 (1058)
Q Consensus 348 ~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd----~~~l 423 (1058)
..++|+|.|||+ ++++ ...|.|++++ ..+.... .+. + ...+..........++++|+ +.+.
T Consensus 3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~--~v~--~--------~~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKT--PVA--D--------LPEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECE--EEE--E---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcc--eec--c--------cccccccccCCcccceeccccCCCCEEE
Confidence 568999999997 6654 5699999999 4443311 000 0 01223445678899999994 3333
Q ss_pred EEEeCC--------CeEEEEEecCC-Ccee---ee-eeeec---CcCCeEEEEEecCCCceEEEEEcCCC
Q 001534 424 GVAFSK--------HIVHLYTYNPT-GELR---QH-LEIDA---HVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1058)
Q Consensus 424 ~~~~~d--------~~i~vwd~~~~-~~~~---~~-~~~~~---h~~~v~~~~fs~d~~~~~l~s~~~d~ 477 (1058)
++.+.. ..|.-|....+ ..+. .. ..+.. ....-..|+|.|||. +.++.+..+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~~ 135 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDGG 135 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-TT
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCCC
Confidence 333321 24555555544 1111 01 01111 223456799999995 455544333
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.68 Score=54.19 Aligned_cols=190 Identities=7% Similarity=0.028 Sum_probs=92.2
Q ss_pred CCCceEEEEEcCC------CcEEEEEcCCCceeE--EeeCCCCCeEEEEecccCCccEEEEEeCCC-----eEEEEeCCC
Q 001534 464 PNKQLCIVTCGDD------KMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDY 530 (1058)
Q Consensus 464 d~~~~~l~s~~~d------~~v~vwd~~~~~~~~--~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~-----~i~~wd~~~ 530 (1058)
++. +++.||.+ ..+..||+.+..... .+....... +++.. +|.+.+.||.++ .+..||..+
T Consensus 303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~~---~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAVI---DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEEE---CCEEEEECCcCCCCCCceEEEEECCC
Confidence 454 66667653 357788887765322 111111111 22221 346777777654 477888776
Q ss_pred CCceEEecCC--CCcEEEEEEcCCCCEEEEEecCCCC-------------------CceEEEeeCCCCceeEeecCCCCC
Q 001534 531 LGSRVDYDAP--GNWCTMMAYSADGTRLFSCGTSKEG-------------------ESHLVEWNESEGAIKRTYSGFRKR 589 (1058)
Q Consensus 531 ~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-------------------~~~i~~wd~~~~~~~~~~~~~~~~ 589 (1058)
..-...-... ......+ .-+|+..+.||.++.. -..+..||..+.+-...-.-...
T Consensus 377 ~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~- 453 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG- 453 (557)
T ss_pred CeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc-
Confidence 4322211111 1111122 2356666666643210 24588899887653322111111
Q ss_pred ceeEEEEcCCCCEEEEEeCC------CeEEEEECCC-CceEEEEecCCCCCCcceEEEeCCCCEEEEEECCC--cEEEEE
Q 001534 590 SLGVVQFDTTRNRFLAAGDE------FQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN--GIKILA 660 (1058)
Q Consensus 590 ~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iw~ 660 (1058)
........-+++..+.||.+ ..+..||..+ .+-...-...........++ -+|+..++|+.+| .+..||
T Consensus 454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcC
Confidence 11111122245666667643 2467899887 33322222221111112222 3678888898888 667777
Q ss_pred CCCC
Q 001534 661 NSDG 664 (1058)
Q Consensus 661 ~~~~ 664 (1058)
..++
T Consensus 532 ~~~~ 535 (557)
T PHA02713 532 VYTY 535 (557)
T ss_pred cccc
Confidence 7665
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.74 E-value=1.3 Score=42.93 Aligned_cols=137 Identities=11% Similarity=0.051 Sum_probs=79.2
Q ss_pred cCCeEEEEEecCCCceEEEEE-cCC--------CcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeE
Q 001534 453 VGGVNDIAFAHPNKQLCIVTC-GDD--------KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523 (1058)
Q Consensus 453 ~~~v~~~~fs~d~~~~~l~s~-~~d--------~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i 523 (1058)
..+.++-..+|+|+ +++-. +.- |.++.|-. +..+..+...-.--+.++|+.+. ..+.++-+.+-+|
T Consensus 108 knR~NDgkvdP~Gr--yy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~-K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDA-KKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCc--eeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccC-cEEEEEccCceEE
Confidence 34566777889998 43221 111 22333321 11122222222334566777332 2455666778888
Q ss_pred EEEeCCC--C-----CceEEecCC----CCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCcee
Q 001534 524 KAWLYDY--L-----GSRVDYDAP----GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLG 592 (1058)
Q Consensus 524 ~~wd~~~--~-----~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~ 592 (1058)
.-||.+- + +.++.+... ...--.+++..+|+..+++- +.++|...|+.+|+.+.++.-... .++
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~----ng~~V~~~dp~tGK~L~eiklPt~-qit 257 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATF----NGGTVQKVDPTTGKILLEIKLPTP-QIT 257 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEe----cCcEEEEECCCCCcEEEEEEcCCC-ceE
Confidence 8888443 2 222222221 11223455566788777775 377899999999999999988766 899
Q ss_pred EEEEcCC
Q 001534 593 VVQFDTT 599 (1058)
Q Consensus 593 ~~~~~~~ 599 (1058)
++||-..
T Consensus 258 sccFgGk 264 (310)
T KOG4499|consen 258 SCCFGGK 264 (310)
T ss_pred EEEecCC
Confidence 9999643
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.052 Score=63.61 Aligned_cols=99 Identities=17% Similarity=0.263 Sum_probs=70.6
Q ss_pred EEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 001534 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT 440 (1058)
Q Consensus 361 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~ 440 (1058)
+++.|+..|.|...|+.+.-.... | -..-.++|++++|+.||..++.|-.+|.|.+||+..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~-----~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLH-----Q-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhh-----c-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 678888899999988876422110 0 1224678999999999999999999999999999998
Q ss_pred CceeeeeeeecCcCCeEEE---EEecCCCceEEEEEcCCCcEEEEEc
Q 001534 441 GELRQHLEIDAHVGGVNDI---AFAHPNKQLCIVTCGDDKMIKVWDV 484 (1058)
Q Consensus 441 ~~~~~~~~~~~h~~~v~~~---~fs~d~~~~~l~s~~~d~~v~vwd~ 484 (1058)
+.++ .+..|..+.+++ .+..++. .++++...|. +|.+
T Consensus 163 k~l~---~i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 KILK---VITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccee---eeeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence 8776 444455444443 4444454 5777776665 5654
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.71 Score=53.99 Aligned_cols=193 Identities=7% Similarity=-0.075 Sum_probs=93.6
Q ss_pred CCCEEEEEeCC------CeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCC-----cEEEEEcCCC
Q 001534 419 DGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-----MIKVWDVVAG 487 (1058)
Q Consensus 419 d~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~-----~v~vwd~~~~ 487 (1058)
++...++||.+ ..+..||..++.- .....+....... +++ .-+|+ +.+.||.++ ++..||..+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~~~R~~~-~~~-~~~g~--IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMIKNRCRF-SLA-VIDDT--IYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCcchhhce-eEE-EECCE--EEEECCcCCCCCCceEEEEECCCC
Confidence 67777777753 3477888776532 1111111111111 222 23555 667777654 4888998876
Q ss_pred ceeE--EeeCCCCCeEEEEecccCCccEEEEEeCCC-----------------------eEEEEeCCCCCceEEecCCCC
Q 001534 488 RKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDG-----------------------KIKAWLYDYLGSRVDYDAPGN 542 (1058)
Q Consensus 488 ~~~~--~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~-----------------------~i~~wd~~~~~~~~~~~~~~~ 542 (1058)
+... .+.........++. ++.+.+.|+.++ .+..||..+.+-...-.....
T Consensus 378 ~W~~~~~mp~~r~~~~~~~~----~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~ 453 (557)
T PHA02713 378 KWKMLPDMPIALSSYGMCVL----DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG 453 (557)
T ss_pred eEEECCCCCcccccccEEEE----CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc
Confidence 5432 22111111112222 346777776542 366677665432221111111
Q ss_pred cEEEEEEcCCCCEEEEEecCCCC--CceEEEeeCCC-Cce--eEeecCCCCCceeEEEEcCCCCEEEEEeCCC--eEEEE
Q 001534 543 WCTMMAYSADGTRLFSCGTSKEG--ESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF--QIKFW 615 (1058)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~--~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iw 615 (1058)
....-...-+++..+.||.++.. ...+..||..+ .+- +..+..... ....+.+ ++...++||.+| .+..|
T Consensus 454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~-~~~~~~~--~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS-ALHTILH--DNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc-cceeEEE--CCEEEEEeeecceeehhhc
Confidence 11111222345655666543211 13467899887 442 233332222 2222333 577788888887 66777
Q ss_pred ECCCCceE
Q 001534 616 DMDNMNML 623 (1058)
Q Consensus 616 d~~~~~~~ 623 (1058)
|..+.+-.
T Consensus 531 d~~~~~W~ 538 (557)
T PHA02713 531 NVYTYEWN 538 (557)
T ss_pred Cccccccc
Confidence 77665433
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.61 E-value=2.2 Score=44.05 Aligned_cols=150 Identities=17% Similarity=0.165 Sum_probs=85.9
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEe
Q 001534 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1058)
Q Consensus 348 ~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~ 427 (1058)
.+.+.++|+||+.++++...++.-.||-...+..... .+ ....+..-.|++++...++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~------------------~~--~g~~l~~PS~d~~g~~W~v~~ 84 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP------------------VL--TGGSLTRPSWDPDGWVWTVDD 84 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee------------------ec--cCCccccccccCCCCEEEEEc
Confidence 7899999999987666653344444444443332221 01 223677889999988887777
Q ss_pred CCCeEEEEE-ecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEE-EcCCCcEEEEEcC---CC------ceeEEeeCC
Q 001534 428 SKHIVHLYT-YNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT-CGDDKMIKVWDVV---AG------RKQYTFEGH 496 (1058)
Q Consensus 428 ~d~~i~vwd-~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s-~~~d~~v~vwd~~---~~------~~~~~l~~~ 496 (1058)
.+...+++. ..++...........-...|+.+.+||||.++.++. ...++.|.+=-+. .| .........
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~ 164 (253)
T PF10647_consen 85 GSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL 164 (253)
T ss_pred CCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc
Confidence 676667764 333332221111111222899999999999754444 2234666666443 23 111222234
Q ss_pred CCCeEEEEecccCCccEEEEEeC
Q 001534 497 EAPVYSVCPHHKESIQFIFSTAI 519 (1058)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~ 519 (1058)
...+.++.|..+. .+++.+..
T Consensus 165 ~~~v~~v~W~~~~--~L~V~~~~ 185 (253)
T PF10647_consen 165 LSDVTDVAWSDDS--TLVVLGRS 185 (253)
T ss_pred cCcceeeeecCCC--EEEEEeCC
Confidence 5678899998543 45555444
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.1 Score=52.22 Aligned_cols=233 Identities=10% Similarity=0.041 Sum_probs=114.6
Q ss_pred eEEEEEeCC------CcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCC-C--
Q 001534 360 TILLVGTNV------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK-H-- 430 (1058)
Q Consensus 360 ~lla~g~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d-~-- 430 (1058)
.+++.|+.+ ..+..+|..+++...-.. +. +...-.+++.. +|...++|+.| |
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~-----------------m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~ 346 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAP-----------------MP-SPRCRVGVAVL-NGKLYVVGGYDSGSD 346 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCC-----------------CC-cccccccEEEE-CCEEEEEccccCCCc
Confidence 366777655 367788888774332111 11 11122233333 55778888888 3
Q ss_pred ---eEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCC-----cEEEEEcCCCceeEEeeCCCCCeEE
Q 001534 431 ---IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-----MIKVWDVVAGRKQYTFEGHEAPVYS 502 (1058)
Q Consensus 431 ---~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~-----~v~vwd~~~~~~~~~l~~~~~~v~~ 502 (1058)
++..||..+++ ......+........... -+|. +.+.|+.|| +|-.||..+.+.-..-. .......
T Consensus 347 ~l~~ve~YD~~~~~-W~~~a~M~~~R~~~~v~~--l~g~--iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~ 420 (571)
T KOG4441|consen 347 RLSSVERYDPRTNQ-WTPVAPMNTKRSDFGVAV--LDGK--LYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSG 420 (571)
T ss_pred ccceEEEecCCCCc-eeccCCccCccccceeEE--ECCE--EEEEeccccccccccEEEecCCCCcccccCC-CCcceee
Confidence 57788887765 222222222222222222 2465 788888886 57788877765322111 1111111
Q ss_pred EEecccCCccEEEEEeCCC------eEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCC-CCCceEEEeeCC
Q 001534 503 VCPHHKESIQFIFSTAIDG------KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK-EGESHLVEWNES 575 (1058)
Q Consensus 503 ~~~~~~~~~~~l~s~s~d~------~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~ 575 (1058)
.+... -+|.+.++|+.++ ++..||..+..-...-.........-.-.-++...+.||.++ .....+..||..
T Consensus 421 ~gv~~-~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~ 499 (571)
T KOG4441|consen 421 HGVAV-LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPE 499 (571)
T ss_pred eEEEE-ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCC
Confidence 11111 2446777887554 467777776544332221111111112223556666666533 113347789988
Q ss_pred CCceeEee--cCCCCCceeEEEEcCCCCEEEEEeCCC-----eEEEEECCCCc
Q 001534 576 EGAIKRTY--SGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMN 621 (1058)
Q Consensus 576 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~ 621 (1058)
+.+....- ..... .+..+.. ++...++||.|| +|..||..+.+
T Consensus 500 ~~~W~~v~~m~~~rs-~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 500 TNQWTMVAPMTSPRS-AVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred CCceeEcccCccccc-cccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 76643331 11111 2222222 456667777665 35556655443
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.05 Score=38.44 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=29.0
Q ss_pred CCcCeEEEEECCCCCEEEEEeCCCeEEEEEec
Q 001534 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN 438 (1058)
Q Consensus 407 h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~ 438 (1058)
....|.+++|+|...+||.|+.+|.|.++.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34569999999999999999999999999983
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.56 Score=53.98 Aligned_cols=115 Identities=14% Similarity=0.253 Sum_probs=76.6
Q ss_pred CCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEe-CCCCCeEEEEE--cCCCCEEEEEeCCCcEEEEeCCC--
Q 001534 881 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-GHQNRITGLAF--SPTLNALVSSGADAQLCMWSIDK-- 955 (1058)
Q Consensus 881 ~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~-~h~~~v~~l~~--spd~~~l~s~s~D~~i~iwd~~~-- 955 (1058)
-..++-+.-|. -++..++-+...++.|||...+.+...-. ...+.|.++.| .|||+.+++.|..+.|.++.-..
T Consensus 29 i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 29 ISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 33455555555 45555554455589999999887443322 45788999988 57999999999999999995421
Q ss_pred -------CccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEEeCCeEEEEeC
Q 001534 956 -------WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002 (1058)
Q Consensus 956 -------~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~~d~~i~vwd~ 1002 (1058)
...++...+. .+++ .+|.+..|.+||.+ ++|.++.+.|+|-
T Consensus 108 y~~~~p~w~~i~~i~i~---~~T~--h~Igds~Wl~~G~L-vV~sGNqlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDIS---SHTP--HPIGDSIWLKDGTL-VVGSGNQLFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEEee---cCCC--CCccceeEecCCeE-EEEeCCEEEEECC
Confidence 1111112222 2332 46899999999985 5556788888887
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.37 E-value=4.4 Score=42.63 Aligned_cols=152 Identities=17% Similarity=0.197 Sum_probs=83.1
Q ss_pred CCCeeEEEEccCCcEEEEEeCCe-EEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEc-ccceeE
Q 001534 840 EESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV-RVDEVK 917 (1058)
Q Consensus 840 ~~~i~~~~~s~d~~~la~~sdg~-i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~-~~~~~~ 917 (1058)
.+.+..+..++||+++++++.|. +.-||--...-...-+.....|..|.|+| ++.+.+. ...|.|++=+. ...+..
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~-~~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWML-ARGGQIQFSDDPDDGETW 221 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEE-ETTTEEEEEE-TTEEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEE-eCCcEEEEccCCCCcccc
Confidence 56788899999999999999666 45677542111111222467899999999 7766654 48888988772 222221
Q ss_pred EE----EeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEEe
Q 001534 918 TK----LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 993 (1058)
Q Consensus 918 ~~----l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~~ 993 (1058)
.. +..-.-.+..++|.+++...|+|+ .|++ +...+.|+.=+.... ...- ......+.|.++.+-++.|.
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~--~~~~---~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRV--GENV---PSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GG--GTTS---SS---EEEEEETTEEEEE-S
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECcc--ccCC---CCceEEEEEcCCCceEEECC
Confidence 11 112233478999999988777655 4543 566666653222111 0111 14478999998889899999
Q ss_pred CCeEEEE
Q 001534 994 ESQISVY 1000 (1058)
Q Consensus 994 d~~i~vw 1000 (1058)
+|.|.=|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 9987655
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.58 Score=53.85 Aligned_cols=112 Identities=15% Similarity=0.173 Sum_probs=78.6
Q ss_pred CeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEee-CCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCC----
Q 001534 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD---- 529 (1058)
Q Consensus 455 ~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~-~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~---- 529 (1058)
...-+.-|.-++ ..++-+....+.|||...+.....-. ...+.|..+.|...++|+.+++.+..+.|.+|--.
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 444555555555 44445556689999998887554322 45789999999999999999999999999998532
Q ss_pred -CCCc----eE--EecC-CCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeC
Q 001534 530 -YLGS----RV--DYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1058)
Q Consensus 530 -~~~~----~~--~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1058)
+..+ +. .+.. ..++|.+..|.++|..++.++ +.+.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG------Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG------NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC------CEEEEECC
Confidence 1111 11 1222 346889999999999888764 45888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.015 Score=66.29 Aligned_cols=109 Identities=13% Similarity=0.240 Sum_probs=69.5
Q ss_pred CeEEEEECCC--ceEEEEe-----cCCCCC---eEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeEEE
Q 001534 861 GKVSLFNMMT--FKVMTMF-----MSPPPA---ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGL 930 (1058)
Q Consensus 861 g~i~iwd~~~--~~~~~~~-----~~~~~~---i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l 930 (1058)
|.+.||+++- |+....+ ...... |..+-|-+ +..++..+..+++|++...+.... ..+++|...++.+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~-~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV-NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc-ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence 6788888763 4332222 111222 34444455 567888888889999877665432 4456687776665
Q ss_pred E-----------EcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCC
Q 001534 931 A-----------FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ 971 (1058)
Q Consensus 931 ~-----------~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 971 (1058)
+ .||||+.+|.++.||.+++|.+.-......+++.....|.
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 4 5899999999999999999987543333334555444443
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.22 E-value=4.3 Score=41.60 Aligned_cols=210 Identities=15% Similarity=0.134 Sum_probs=122.6
Q ss_pred CeEEEEEecCCCceEEEEEcCCCcEEEEEcC------CCc-eeEEeeC-----CCCCeEEEEecccCC----------cc
Q 001534 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV------AGR-KQYTFEG-----HEAPVYSVCPHHKES----------IQ 512 (1058)
Q Consensus 455 ~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~------~~~-~~~~l~~-----~~~~v~~~~~~~~~~----------~~ 512 (1058)
.-+.|+|+|.+. +-++...-+...+||.. ..+ .+.++.. .....+.+.|+...+ ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 457899999887 67777778899999986 122 2334432 234577777764321 13
Q ss_pred EEEEEeCCCeEEEEeCCCCCc-----eEEecCC-CC-cEEEEEEcC--CCCEEEEEecCCCCCceEEEeeCCCCceeEee
Q 001534 513 FIFSTAIDGKIKAWLYDYLGS-----RVDYDAP-GN-WCTMMAYSA--DGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1058)
Q Consensus 513 ~l~s~s~d~~i~~wd~~~~~~-----~~~~~~~-~~-~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1058)
.++.+++||+|.-|....... ...+... .. -...+++.. .+.+|+.+-. ..++|.++|-.-... ..-
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~-~~~ 177 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPP-PLP 177 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccc-cCC
Confidence 478889999999997532222 2233222 22 334555553 4677777654 478899998542221 110
Q ss_pred cCCCCC-------cee-----------EEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeC---
Q 001534 584 SGFRKR-------SLG-----------VVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK--- 642 (1058)
Q Consensus 584 ~~~~~~-------~v~-----------~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--- 642 (1058)
....+. +.. -..-.++++.=+.+..-|.|-+||+. |+.++++...+....-..++..|
T Consensus 178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~F 256 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESF 256 (336)
T ss_pred CCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhh
Confidence 000110 111 11112222222333445789999976 77888876555444556677655
Q ss_pred ---CCCEEEEEECCCcEEEEECCCCceeeeccc
Q 001534 643 ---EGSLLAVTTSDNGIKILANSDGVRLLRMLE 672 (1058)
Q Consensus 643 ---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 672 (1058)
.+.+|+---.||+|..||..++ +.+..+.
T Consensus 257 G~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~ 288 (336)
T TIGR03118 257 GSLSGALLVGNFGDGTINAYDPQSG-AQLGQLL 288 (336)
T ss_pred CCCCCCeEEeecCCceeEEecCCCC-ceeeeec
Confidence 4666766667999999999888 4444443
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=6.2 Score=42.79 Aligned_cols=154 Identities=14% Similarity=0.084 Sum_probs=95.1
Q ss_pred CCCeeEEEEccCCcEEEEEeCCeEEEEECCCceEEEEe-cCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEE
Q 001534 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMF-MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1058)
Q Consensus 840 ~~~i~~~~~s~d~~~la~~sdg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~ 918 (1058)
...+.++.+.+++.+++++..|.+..-.-..++.-... ......++++++.+ +++++++| ..|.+++=..+.|+.-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCccc
Confidence 45688999999999998888886553211222222222 22345789999999 78877665 56766533344444322
Q ss_pred EEeC----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEEeC
Q 001534 919 KLKG----HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 994 (1058)
Q Consensus 919 ~l~~----h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~~d 994 (1058)
.... -...+.++.+.|+++.++ ++.+|.|. ...+.|+.-.. .....+.. .....+.|..+++.+++|..
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~--~~~~~~~~---~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEK--DPVGEEVP---SNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeE--CCcCCCCC---cceEEEEEeCCCceEEECCC
Confidence 2221 123578899999887555 55677553 55565542211 11111111 34688999999999999999
Q ss_pred CeEEEEeC
Q 001534 995 SQISVYDS 1002 (1058)
Q Consensus 995 ~~i~vwd~ 1002 (1058)
|.|.-|+-
T Consensus 323 G~il~~~~ 330 (334)
T PRK13684 323 GVLLRYVG 330 (334)
T ss_pred ceEEEecC
Confidence 99987764
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=94.91 E-value=6.9 Score=42.40 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=43.7
Q ss_pred CCCCeEEEEEeCC------CCCEEEEEeCCCeEEEEEcccceeEE---E-EeCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 001534 880 PPPAATFLAFHPQ------DNNIIAIGMEDSSVQIYNVRVDEVKT---K-LKGHQNRITGLAFSPTLNALVSSGADAQLC 949 (1058)
Q Consensus 880 ~~~~i~~l~~s~~------~~~~lasg~~dg~I~iwd~~~~~~~~---~-l~~h~~~v~~l~~spd~~~l~s~s~D~~i~ 949 (1058)
+...+..+.|... .+.+++..-..+.|....++++..+. . +.....++..+++.|||.+.++-+.+|.|.
T Consensus 251 ~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 251 PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 3356777777641 34466655556688888887443222 2 234555899999999999999888888763
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.098 Score=50.41 Aligned_cols=103 Identities=15% Similarity=0.214 Sum_probs=60.3
Q ss_pred EEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 001534 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT 440 (1058)
Q Consensus 361 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~ 440 (1058)
-+++|+.+|.|.+|++..-...... +..+-..-..-|.-..++.+..+++.||.|+.|++.-.
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~-----------------~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDR-----------------VCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred eEEeecccceEEEecCCccchHHHh-----------------hhcccccceeccccccccceeEEeccCCceeeeccccC
Confidence 4778999999999998732211110 01111222223333446678899999999999999877
Q ss_pred CceeeeeeeecCc-CCeEEEEEecCCCceEEEEE--cCCCcEEEEEcC
Q 001534 441 GELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTC--GDDKMIKVWDVV 485 (1058)
Q Consensus 441 ~~~~~~~~~~~h~-~~v~~~~fs~d~~~~~l~s~--~~d~~v~vwd~~ 485 (1058)
+.+. ....|. .++.....+..++ .++.+ |.|..++.|++.
T Consensus 135 k~~g---~~g~h~~~~~e~~ivv~sd~--~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 135 KVLG---YVGQHNFESGEELIVVGSDE--FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceee---eeccccCCCcceeEEecCCc--eEEeeccccchhhhhcchh
Confidence 6554 333455 4444444444444 34444 555566666554
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.58 E-value=14 Score=44.40 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=64.3
Q ss_pred EEEccCCcEEEEEeCCeEEEEECCCceEEEEecC--CCCCeEEEEEeCCCCCEEEEEeCCCeEEEE--EcccceeEEEEe
Q 001534 846 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIY--NVRVDEVKTKLK 921 (1058)
Q Consensus 846 ~~~s~d~~~la~~sdg~i~iwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~~lasg~~dg~I~iw--d~~~~~~~~~l~ 921 (1058)
.|+.|...++.+|-...+++||+...++++..+. -...|+.+.+. +..+++|..--.|.++ +-...+ +..+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~-l~~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQ-LIVFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCe-EEEEe
Confidence 5667777788887789999999988776655432 24567777774 4566666655555544 433334 33443
Q ss_pred CC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001534 922 GH--QNRITGLAFSPTLNALVSSGADAQLCMWSID 954 (1058)
Q Consensus 922 ~h--~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~ 954 (1058)
.. ...|+++.+- |-..+|.++.=|.+.+-.+.
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 22 2346766665 44557767666666555554
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.23 E-value=12 Score=42.12 Aligned_cols=105 Identities=11% Similarity=0.188 Sum_probs=59.1
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCC----CCceeEeecCCCCCceeEEEEcCC----CCEEEEEeCCCeEE
Q 001534 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES----EGAIKRTYSGFRKRSLGVVQFDTT----RNRFLAAGDEFQIK 613 (1058)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~----~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~ 613 (1058)
+++..++| -||+.++... +++-+-. ....+..|. .|..++|.|- ...+++......|.
T Consensus 20 HPvhGlaW-TDGkqVvLT~--------L~l~~gE~kfGds~viGqFE-----hV~GlsW~P~~~~~~paLLAVQHkkhVt 85 (671)
T PF15390_consen 20 HPVHGLAW-TDGKQVVLTD--------LQLHNGEPKFGDSKVIGQFE-----HVHGLSWAPPCTADTPALLAVQHKKHVT 85 (671)
T ss_pred ccccceEe-cCCCEEEEEe--------eeeeCCccccCCccEeeccc-----eeeeeeecCcccCCCCceEEEeccceEE
Confidence 47788899 4676665432 3332211 112222222 5788999885 34677777888999
Q ss_pred EEECC-----CCceEEEEecCC-CCCC--cceEEEeCCCCEEEEEECCCcEEEEE
Q 001534 614 FWDMD-----NMNMLTTVDADG-GLPA--SPRLRFNKEGSLLAVTTSDNGIKILA 660 (1058)
Q Consensus 614 iwd~~-----~~~~~~~~~~~~-~~~~--v~~~~~s~~~~~l~~~~~dg~i~iw~ 660 (1058)
||.+- .++.+..-..+- ..-+ -..+.|+|....|++-+....-.+++
T Consensus 86 VWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~s 140 (671)
T PF15390_consen 86 VWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPS 140 (671)
T ss_pred EEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeee
Confidence 99875 233332222111 1011 24678999998888776653333333
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.18 E-value=4.7 Score=43.25 Aligned_cols=123 Identities=12% Similarity=0.167 Sum_probs=81.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~ 424 (1058)
..++|.++.||+|.+ ++|+--.+.+|.+++....+....... ..+..+..|....|+.+ .-+|
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~---------------~ck~k~~~IlGF~W~~s-~e~A 127 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQ---------------ECKTKNANILGFCWTSS-TEIA 127 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHH---------------HhccCcceeEEEEEecC-eeEE
Confidence 467999999999998 889999999999999865443321110 02233456888999876 5566
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCC
Q 001534 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1058)
Q Consensus 425 ~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~ 487 (1058)
..+..| +-+|.+.... +..+..+.|...|.-..|.++..-.+++|+-..+++.=+-++++
T Consensus 128 ~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 128 FITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 665555 7777766543 22224567888999999999987533444434444444444444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.08 E-value=5.3 Score=45.93 Aligned_cols=220 Identities=9% Similarity=0.073 Sum_probs=104.9
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEEEE
Q 001534 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1058)
Q Consensus 347 ~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~~~ 426 (1058)
+++-+|..+|..-.=++ +.--.|+|++... ..+.+ ++-.|. .+..+.|+.+..+| +.
T Consensus 44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~sG-~lL~~------------------~~w~~~-~lI~mgWs~~eeLI-~v 100 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLY--SARPYIRIFNISG-QLLGR------------------ILWKHG-ELIGMGWSDDEELI-CV 100 (829)
T ss_pred CCceEEEeccccccccc--ccceeEEEEeccc-cchHH------------------HHhcCC-CeeeecccCCceEE-EE
Confidence 34555666664321112 3345688888764 33332 112233 78899999877655 55
Q ss_pred eCCCeEEEEEecCCCceeee-eeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCC-CCCeEEEE
Q 001534 427 FSKHIVHLYTYNPTGELRQH-LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-EAPVYSVC 504 (1058)
Q Consensus 427 ~~d~~i~vwd~~~~~~~~~~-~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~-~~~v~~~~ 504 (1058)
..+|+++||++.... +... .-.......|..+.|...|= +.-..+|.+.+-+-.....+++++.- .......+
T Consensus 101 ~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV----avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~ 175 (829)
T KOG2280|consen 101 QKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV----AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSC 175 (829)
T ss_pred eccceEEEeecchhh-hcccccccccccCceeEEEEecCce----EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcc
Confidence 699999999987632 1110 01122233466666666553 22333445544431221122222220 01111112
Q ss_pred ecccCC---ccEEEEEeCCCeEEEEeCCCCC-ceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCcee
Q 001534 505 PHHKES---IQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1058)
Q Consensus 505 ~~~~~~---~~~l~s~s~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1058)
|.-..+ ...++-....--..++-.+... ....+......+..+..||+.++|+.-. ..|.|.+-+....+..
T Consensus 176 Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt----~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 176 WTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYT----ETGKIWVVSIDLSQIL 251 (829)
T ss_pred eeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEe----cCCcEEEEecchhhhh
Confidence 211111 1111111100001111111111 1112233346788999999999998776 3777888887777766
Q ss_pred EeecCCCCCceeEEEEcC
Q 001534 581 RTYSGFRKRSLGVVQFDT 598 (1058)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~ 598 (1058)
..+.......-..++|..
T Consensus 252 ce~~~~~~~~p~qm~Wcg 269 (829)
T KOG2280|consen 252 CEFNCTDHDPPKQMAWCG 269 (829)
T ss_pred hccCCCCCCchHhceeec
Confidence 666543332223455543
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=4.6 Score=44.53 Aligned_cols=148 Identities=11% Similarity=0.110 Sum_probs=89.8
Q ss_pred CCeeEEEEccCCcEEEEEeCCeEEE-EECCCceEE-E-EecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccce--
Q 001534 841 ESAACIALSKNDSYVMSASGGKVSL-FNMMTFKVM-T-MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-- 915 (1058)
Q Consensus 841 ~~i~~~~~s~d~~~la~~sdg~i~i-wd~~~~~~~-~-~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~-- 915 (1058)
+....+..++||.+++.+..|.+.. ||- +... . .-......++++.|.+ ++.+++++ .+|.+. |....++
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~-~S~d~G~~~ 313 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLY-VSKGTGLTE 313 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEE-EecCCCCcc
Confidence 3456677889999999998776443 443 2221 1 1122345689999998 78777654 666654 3444443
Q ss_pred ---eEEEEeC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEE
Q 001534 916 ---VKTKLKG--HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL 990 (1058)
Q Consensus 916 ---~~~~l~~--h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~ 990 (1058)
....+.. -...++++.|.+++..++ ++.+|.+... .+.|+.-.. ......- ......+.|.++++.++
T Consensus 314 ~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s-~D~G~tW~~--~~~~~~~---~~~ly~v~f~~~~~g~~ 386 (398)
T PLN00033 314 EDFDFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRS-TDGGKSWKR--DKGADNI---AANLYSVKFFDDKKGFV 386 (398)
T ss_pred cccceeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEe-CCCCcceeE--ccccCCC---CcceeEEEEcCCCceEE
Confidence 2222221 223589999998877555 5577866554 444442111 1100111 13478999999999999
Q ss_pred EEeCCeEEEE
Q 001534 991 VVHESQISVY 1000 (1058)
Q Consensus 991 ~~~d~~i~vw 1000 (1058)
+|.+|.|.-|
T Consensus 387 ~G~~G~il~~ 396 (398)
T PLN00033 387 LGNDGVLLRY 396 (398)
T ss_pred EeCCcEEEEe
Confidence 9999988665
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=93.96 E-value=12 Score=41.35 Aligned_cols=230 Identities=14% Similarity=0.192 Sum_probs=127.3
Q ss_pred CceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEcc-----CCcEEEEE
Q 001534 784 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-----NDSYVMSA 858 (1058)
Q Consensus 784 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~-----d~~~la~~ 858 (1058)
...+++|+..|.+++|+-....+.+... ++...+ ..+|..++.-+ +...||+-
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~l----------------llE~~l------~~PILqv~~G~F~s~~~~~~LaVL 94 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDL----------------LLETQL------KDPILQVECGKFVSGSEDLQLAVL 94 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccE----------------EEEEec------CCcEEEEEeccccCCCCcceEEEe
Confidence 4578899999999999754333222211 111111 44565554322 34466666
Q ss_pred eCCeEEEEECCC--ce-------EEEEecCCCCC--eEEEEEeCC----CCCEEEEEeCCCeEEEEEcccceeEEEEeCC
Q 001534 859 SGGKVSLFNMMT--FK-------VMTMFMSPPPA--ATFLAFHPQ----DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 923 (1058)
Q Consensus 859 sdg~i~iwd~~~--~~-------~~~~~~~~~~~--i~~l~~s~~----~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h 923 (1058)
.-..+.||.+.. |. .+.....|.-. ...++.-|. +..+|.+=+.||.+.+++-+.......+.+
T Consensus 95 hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 95 HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred cCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 678888888732 11 12222233322 233333331 246888999999999999766554444544
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC--------------------CccccceeeecCCCCCCCCCCeeEEEEc
Q 001534 924 QNRITGLAFSPTLNALVSSGADAQLCMWSIDK--------------------WEKLKSRFIQAPAGRQSPLVGETKVQFH 983 (1058)
Q Consensus 924 ~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~--------------------~~~~~~~~~~~~~~~~~~~~~v~~~~fs 983 (1058)
.--...+++.+....+++++.+..+.-|.... ++...... ...-|... -.|.-+.++
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dW-s~nlGE~~--l~i~v~~~~ 250 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDW-SFNLGEQA--LDIQVVRFS 250 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccccccccccccee-EEECCcee--EEEEEEEcC
Confidence 33344578888888999999998888887531 11110000 01111110 123344455
Q ss_pred CCCcEEEEEeCCeEEEEeCCCCeeeEEeeccccceEEc---c----CC---cEEEEEECCCeEEEEc
Q 001534 984 NDQTHLLVVHESQISVYDSKLECSRSVSFLSLCPYVFG---V----SS---IFLLSTLTKLSVAVHD 1040 (1058)
Q Consensus 984 ~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s---~----~~---~~l~~~~~d~~v~vw~ 1040 (1058)
.....+++-....+.+.+-+| .++..+.+.+.+.++. . ++ ..++.++.++.+.||.
T Consensus 251 ~~~~~IvvLger~Lf~l~~~G-~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 251 SSESDIVVLGERSLFCLKDNG-SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred CCCceEEEEecceEEEEcCCC-eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence 455566665677888888866 3333333333333332 1 22 2477778899998886
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=2.8 Score=49.32 Aligned_cols=151 Identities=7% Similarity=-0.037 Sum_probs=69.8
Q ss_pred ccEEEEEeCC-----CeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCC--CceEEEeeCCCCceeEee
Q 001534 511 IQFIFSTAID-----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG--ESHLVEWNESEGAIKRTY 583 (1058)
Q Consensus 511 ~~~l~s~s~d-----~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~--~~~i~~wd~~~~~~~~~~ 583 (1058)
+.+++.|+.+ ..+..||..+.+-...-..+.......+..-+++..+.||....+ -..+..||..+++-...-
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 3677777765 346677776543222111111111111122355666666532211 256889998876533221
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCC--------CeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECC--
Q 001534 584 SGFRKRSLGVVQFDTTRNRFLAAGDE--------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD-- 653 (1058)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-- 653 (1058)
.......-.++ ...++..++.||.+ ..+.+||..+++-...-...........+. .++..++.|+.+
T Consensus 423 ~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~ 499 (534)
T PHA03098 423 PLPISHYGGCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYE 499 (534)
T ss_pred CCCccccCceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCC
Confidence 11111011122 22345566666642 238888888765332211111111111222 366677777654
Q ss_pred ---CcEEEEECCCC
Q 001534 654 ---NGIKILANSDG 664 (1058)
Q Consensus 654 ---g~i~iw~~~~~ 664 (1058)
+.+.+||..+.
T Consensus 500 ~~~~~v~~yd~~~~ 513 (534)
T PHA03098 500 YYINEIEVYDDKTN 513 (534)
T ss_pred cccceeEEEeCCCC
Confidence 46778887665
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=93.52 E-value=4.9 Score=39.19 Aligned_cols=144 Identities=13% Similarity=0.157 Sum_probs=84.6
Q ss_pred CEEEEEeCCCeEEEEEcc--cceeEEEEeCCCCCeEEEEEcCCCCEEEEEeCC------CcEEEE---eCC--CCccccc
Q 001534 895 NIIAIGMEDSSVQIYNVR--VDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD------AQLCMW---SID--KWEKLKS 961 (1058)
Q Consensus 895 ~~lasg~~dg~I~iwd~~--~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D------~~i~iw---d~~--~~~~~~~ 961 (1058)
..|..+.....|.+|++. ..+.+.++.. -+.|..+.++.-|.||+|-=.+ ..+|+| ... ..+....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455455667789999998 3355666764 4789999999999999986332 245665 222 1111111
Q ss_pred eeeecCCC--------------CCCCCCCeeEEEEcCCCcEEEEEeCCeEEEEeCC---C--CeeeEEee--------cc
Q 001534 962 RFIQAPAG--------------RQSPLVGETKVQFHNDQTHLLVVHESQISVYDSK---L--ECSRSVSF--------LS 1014 (1058)
Q Consensus 962 ~~~~~~~~--------------~~~~~~~v~~~~fs~d~~~l~~~~d~~i~vwd~~---~--~~~~~~~~--------~~ 1014 (1058)
+....... ..+-..++.+++-.|-..-|++|.++.+.+|.+. . +....+.+ ..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 11110000 0011235688888887777888899999999982 1 11122222 11
Q ss_pred ccceEEccCCcEEEEEECCCeEEEEc
Q 001534 1015 LCPYVFGVSSIFLLSTLTKLSVAVHD 1040 (1058)
Q Consensus 1015 ~~~~~~s~~~~~l~~~~~d~~v~vw~ 1040 (1058)
+.+...+.-+.|++. -++.++.+..
T Consensus 188 ~~p~~v~ic~~yiA~-~s~~ev~Vlk 212 (215)
T PF14761_consen 188 FKPTQVAICEGYIAV-MSDLEVLVLK 212 (215)
T ss_pred ceEEEEEEEeeEEEE-ecCCEEEEEE
Confidence 444444556777766 4566666654
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.23 Score=33.88 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=26.9
Q ss_pred CCeeEEEEecCCC--eEEEEEeCCCcEEEEEccC
Q 001534 347 SNVMSMDFHPQQQ--TILLVGTNVGDISLWEVGS 378 (1058)
Q Consensus 347 ~~V~~~~fspdg~--~lla~g~~dg~v~iwd~~~ 378 (1058)
++|.+++|||+.. .||+..-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4789999998654 5888887889999999986
|
It contains a characteristic DLL sequence motif. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.24 E-value=2.7 Score=46.49 Aligned_cols=138 Identities=12% Similarity=0.128 Sum_probs=80.2
Q ss_pred CeeEEEEccCCcEEEEEe------------C-CeEEEEECCC--ce--EEEEecCCCCCeEEEEEeCCCCCEEEEEeCCC
Q 001534 842 SAACIALSKNDSYVMSAS------------G-GKVSLFNMMT--FK--VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 904 (1058)
Q Consensus 842 ~i~~~~~s~d~~~la~~s------------d-g~i~iwd~~~--~~--~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg 904 (1058)
....++|.++|+++++-. . +.|.+++-.+ |+ ....+.......+.+++.+ ++ +++ ++..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~- 90 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP- 90 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC-
Confidence 457899999999887742 2 3777776543 32 2234443445678899998 77 444 3344
Q ss_pred eEEEE-Eccc-----ce--eE-EEEeC----CCCCeEEEEEcCCCCEEEEEeCC-------------------CcEEEEe
Q 001534 905 SVQIY-NVRV-----DE--VK-TKLKG----HQNRITGLAFSPTLNALVSSGAD-------------------AQLCMWS 952 (1058)
Q Consensus 905 ~I~iw-d~~~-----~~--~~-~~l~~----h~~~v~~l~~spd~~~l~s~s~D-------------------~~i~iwd 952 (1058)
.|..| |.+. ++ .+ ..+.. +......++|.|||.+.++.+.. +.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 45444 4431 12 11 12322 23447789999999887765521 3344455
Q ss_pred CCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEE
Q 001534 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1058)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~ 992 (1058)
.++++. .. ...++ .....++|+++|+++++-
T Consensus 171 pdg~~~---e~--~a~G~----rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 171 PDGGKL---RV--VAHGF----QNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred cCCCeE---EE--EecCc----CCCccceECCCCCEEEEc
Confidence 554331 11 12232 235789999999988773
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.17 E-value=3.9 Score=48.09 Aligned_cols=191 Identities=12% Similarity=0.033 Sum_probs=87.5
Q ss_pred CCCEEEEEeCCC------eEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCC-----CcEEEEEcCCC
Q 001534 419 DGLMLGVAFSKH------IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAG 487 (1058)
Q Consensus 419 d~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d-----~~v~vwd~~~~ 487 (1058)
++..++.|+.++ .+..||..+.+-.. ...+.........+. -+++ +++.||.+ ..+..||..++
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~--~~~~--lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTV--FNNR--IYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEE--ECCE--EEEEeCCCCCEecceEEEEcCCCC
Confidence 556666776532 46778877654211 111111111122222 2454 66667655 35778888776
Q ss_pred ceeEE--eeCCCCCeEEEEecccCCccEEEEEeCC------CeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEE
Q 001534 488 RKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1058)
Q Consensus 488 ~~~~~--l~~~~~~v~~~~~~~~~~~~~l~s~s~d------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1058)
+.... +...... .+++.. ++.+.+.|+.+ +.+..||..+.+-...-..........+...+++.++.|
T Consensus 369 ~W~~~~~lp~~r~~-~~~~~~---~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 444 (534)
T PHA03098 369 KWREEPPLIFPRYN-PCVVNV---NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIG 444 (534)
T ss_pred ceeeCCCcCcCCcc-ceEEEE---CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEEC
Confidence 54321 1111111 111211 33666666632 357788876543222111111111111222355555566
Q ss_pred ecCCCC----CceEEEeeCCCCceeEe--ecCCCCCceeEEEEcCCCCEEEEEeCC-----CeEEEEECCCCc
Q 001534 560 GTSKEG----ESHLVEWNESEGAIKRT--YSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMN 621 (1058)
Q Consensus 560 ~~~~~~----~~~i~~wd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 621 (1058)
|.+... -..+.+||..+++-... +..... ....+.+ ++..++.||.+ ..+.+||..+.+
T Consensus 445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 445 GISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRI-NASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CccCCCCCcccceEEEecCCCCceeeCCCCCcccc-cceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 532211 13488999887653322 111111 1122222 56666667643 467778777654
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.87 Score=54.25 Aligned_cols=146 Identities=16% Similarity=0.108 Sum_probs=95.4
Q ss_pred CCCeeEEEEccCCcEEEEEe--C-CeEEEEECCCceE-----EEEecCC------CCCeEEEEEeCCCCCEEEEEeCCCe
Q 001534 840 EESAACIALSKNDSYVMSAS--G-GKVSLFNMMTFKV-----MTMFMSP------PPAATFLAFHPQDNNIIAIGMEDSS 905 (1058)
Q Consensus 840 ~~~i~~~~~s~d~~~la~~s--d-g~i~iwd~~~~~~-----~~~~~~~------~~~i~~l~~s~~~~~~lasg~~dg~ 905 (1058)
.-.+..+...+|++..++.. + ..|..||+.+... .+.|..| .....++.|.|.=....|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 45566777788888776654 3 3589999976432 1222222 2345678888733334567778999
Q ss_pred EEEEEcccce-eEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcC
Q 001534 906 VQIYNVRVDE-VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 984 (1058)
Q Consensus 906 I~iwd~~~~~-~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~ 984 (1058)
|++..+.-.. ....+. -...+++++|||.|+.++.|-..|++.-|...-..+. .+..+.-.. ...|.+|+|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~e--~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVEE--NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcCC--CcceeEEEEec
Confidence 9888765332 222222 4566899999999999999999999988876542211 111111111 26799999999
Q ss_pred CCcEEEE
Q 001534 985 DQTHLLV 991 (1058)
Q Consensus 985 d~~~l~~ 991 (1058)
...++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 9999887
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=92.67 E-value=24 Score=42.31 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=56.6
Q ss_pred CcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCC
Q 001534 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1058)
Q Consensus 408 ~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~ 487 (1058)
.-.|..|.+||+|++||..|..| |.|-.+... ......+.+-...|.|=.+.-+.. +...
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r--~g~~~~~~~g~~~i~Crt~~v~~~---~~~~-------------- 143 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRR--WGKNGEFEDGKKEINCRTVPVDER---FFTS-------------- 143 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccc--cCccccccCCCcceeEEEEEechh---hccC--------------
Confidence 34789999999999999998876 444444321 000001222223333333322221 1111
Q ss_pred ceeEEeeCCCCCeEEEEecccC-CccEEEEEeCCCeEEEEeCCCCC
Q 001534 488 RKQYTFEGHEAPVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYDYLG 532 (1058)
Q Consensus 488 ~~~~~l~~~~~~v~~~~~~~~~-~~~~l~s~s~d~~i~~wd~~~~~ 532 (1058)
.+...|..+.|+|.. ++..|+.-..|+++|+||+....
T Consensus 144 -------~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 144 -------NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred -------CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 133456777888764 35788888888899999886543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.45 E-value=4.7 Score=38.55 Aligned_cols=147 Identities=12% Similarity=0.046 Sum_probs=80.9
Q ss_pred CccEEEEEeCC--CeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCC
Q 001534 510 SIQFIFSTAID--GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587 (1058)
Q Consensus 510 ~~~~l~s~s~d--~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (1058)
+|+++.+.+.- ..|++||+++++...........+..=-...-|.++..-.. .++.-..+|.++-+++..+.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~lg~~~y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEELGRFSYEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe---ccceeEEEChHHhhhhcccccCC
Confidence 44677777654 45999999988887755443222211111222334433332 47778889988888777665543
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCC---cceEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001534 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA---SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 588 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
. -..+ ..|+..|+.+....+++.-|.++.....++.......+ ++.+.|- ||...|-.-.+..|...+.++|
T Consensus 132 e--GWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 132 E--GWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred c--ceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCC
Confidence 3 2233 34555677776666788878777665555433222112 2333332 4555544444444545555555
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.5 Score=32.29 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=27.4
Q ss_pred CCeEEEEEeCCCC--CEEEEEeCCCeEEEEEccc
Q 001534 882 PAATFLAFHPQDN--NIIAIGMEDSSVQIYNVRV 913 (1058)
Q Consensus 882 ~~i~~l~~s~~~~--~~lasg~~dg~I~iwd~~~ 913 (1058)
+.|+++.|||..+ .+||.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998455 6999999999999999985
|
It contains a characteristic DLL sequence motif. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.07 E-value=4.4 Score=43.45 Aligned_cols=143 Identities=10% Similarity=0.052 Sum_probs=89.9
Q ss_pred CeEEEEEeCCCCCEEEEEeCCCeEEEEEcccc---eeEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc
Q 001534 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959 (1058)
Q Consensus 883 ~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~---~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~ 959 (1058)
+-+.+-|.. .++.|. +...|.+.=|-+... -++..-....++|.++.||+|.+.||.--.|++|.+.+....+..
T Consensus 24 esngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 24 ESNGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred cccceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence 345566664 344433 334455666665432 122222345679999999999999999999999999998554433
Q ss_pred cceeeecCCCCCCCCCCeeEEEEcCCCcEEEEEeCCeEEEEeC--CCCeeeEEeec--cccceEEccCCcEEEEEEC
Q 001534 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS--KLECSRSVSFL--SLCPYVFGVSSIFLLSTLT 1032 (1058)
Q Consensus 960 ~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~~d~~i~vwd~--~~~~~~~~~~~--~~~~~~~s~~~~~l~~~~~ 1032 (1058)
.........+ ...|....|+.. .-+|.-.+..+.+|.+ ..+.++.+... .++=+.|.++...++.++.
T Consensus 102 l~~~~~ck~k----~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 102 LEYTQECKTK----NANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hHHHHHhccC----cceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 2211111111 145889999988 4566666777888887 66666666553 3666677777776655443
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.17 Score=58.13 Aligned_cols=109 Identities=20% Similarity=0.345 Sum_probs=69.5
Q ss_pred ccCCcEEEEEe-CCeEEEEECCCceEEEEecCCCCCeEEEE-----------EeCCCCCEEEEEeCCCeEEEEEcc-cc-
Q 001534 849 SKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLA-----------FHPQDNNIIAIGMEDSSVQIYNVR-VD- 914 (1058)
Q Consensus 849 s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~-----------~s~~~~~~lasg~~dg~I~iwd~~-~~- 914 (1058)
-++.-++..+. +++|++.+..+... ..+++|...++.++ +|| ||+.+|+++.||.+++|.+. +|
T Consensus 192 ~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 192 AVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYITGK 269 (1283)
T ss_pred ccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeeeecc
Confidence 33666776766 67877766654322 44556776665543 689 99999999999998888754 33
Q ss_pred ---eeEEEEeCCC-CCeEEEEEcCCC---------CEEEEE-eCCCcEEEEeCCCCccc
Q 001534 915 ---EVKTKLKGHQ-NRITGLAFSPTL---------NALVSS-GADAQLCMWSIDKWEKL 959 (1058)
Q Consensus 915 ---~~~~~l~~h~-~~v~~l~~spd~---------~~l~s~-s~D~~i~iwd~~~~~~~ 959 (1058)
.|+...+.|. .+-.|.-|..+. .+++++ .....+++|.-..++|+
T Consensus 270 ~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 270 IVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 4556667777 333333343321 233443 34566899998887765
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=91.80 E-value=11 Score=41.74 Aligned_cols=151 Identities=9% Similarity=0.011 Sum_probs=82.1
Q ss_pred CCeEEEEEeCCCCCEEEEEe-----------CCC-eEEEEEccc--ce--eEEEEeCCCCCeEEEEEcCCCCEEEEEeCC
Q 001534 882 PAATFLAFHPQDNNIIAIGM-----------EDS-SVQIYNVRV--DE--VKTKLKGHQNRITGLAFSPTLNALVSSGAD 945 (1058)
Q Consensus 882 ~~i~~l~~s~~~~~~lasg~-----------~dg-~I~iwd~~~--~~--~~~~l~~h~~~v~~l~~spd~~~l~s~s~D 945 (1058)
.....|+|.+ +|+++++-. ..+ .|.+++-.+ |+ ....+.........|++.++| +++ ++..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 4567889999 888776542 223 787776442 32 223443344456889999998 444 4444
Q ss_pred CcEEEEeCCCCc-c--ccceeeecCCCC-CCCCCCeeEEEEcCCCcEEEE-EeC-------------------CeEEEEe
Q 001534 946 AQLCMWSIDKWE-K--LKSRFIQAPAGR-QSPLVGETKVQFHNDQTHLLV-VHE-------------------SQISVYD 1001 (1058)
Q Consensus 946 ~~i~iwd~~~~~-~--~~~~~~~~~~~~-~~~~~~v~~~~fs~d~~~l~~-~~d-------------------~~i~vwd 1001 (1058)
...++.+.+... . .....+...... .........++|.|||.+.++ |.. +.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 433344543211 1 111122212111 000134678999999987776 311 3355555
Q ss_pred CCCCeeeEEee--ccccceEEccCCcEEEEEECCCe
Q 001534 1002 SKLECSRSVSF--LSLCPYVFGVSSIFLLSTLTKLS 1035 (1058)
Q Consensus 1002 ~~~~~~~~~~~--~~~~~~~~s~~~~~l~~~~~d~~ 1035 (1058)
..+..+..+.. .....++|+++|+.+++-..+..
T Consensus 171 pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~~ 206 (367)
T TIGR02604 171 PDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDDPP 206 (367)
T ss_pred cCCCeEEEEecCcCCCccceECCCCCEEEEccCCCc
Confidence 54444433333 22456889999999877554443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=91.70 E-value=11 Score=44.40 Aligned_cols=164 Identities=11% Similarity=0.122 Sum_probs=93.4
Q ss_pred EEEEEeCCCcEEEEEccCccccccCc-ceeecccccccccccccc--cCCCcCeEEEEECC--CCCEEEEEeCCCeEEEE
Q 001534 361 ILLVGTNVGDISLWEVGSRERLAHKP-FKVWDISAASMPLQNALL--NDAAISVNRCVWGP--DGLMLGVAFSKHIVHLY 435 (1058)
Q Consensus 361 lla~g~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~sp--d~~~l~~~~~d~~i~vw 435 (1058)
+++++. .+.|.||+...-....... ....+............. ..-...|+.|.... +...|+.+..||.|.+|
T Consensus 51 ~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Y 129 (717)
T PF08728_consen 51 LLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLAY 129 (717)
T ss_pred EEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEEE
Confidence 566554 7899999987544322100 000000000000000000 01223466666554 56689999999999999
Q ss_pred EecC-------C----------CceeeeeeeecCcCCeEEEEEe--cCCCceEEEEEcCCCcEEEEEcCC--CceeE-Ee
Q 001534 436 TYNP-------T----------GELRQHLEIDAHVGGVNDIAFA--HPNKQLCIVTCGDDKMIKVWDVVA--GRKQY-TF 493 (1058)
Q Consensus 436 d~~~-------~----------~~~~~~~~~~~h~~~v~~~~fs--~d~~~~~l~s~~~d~~v~vwd~~~--~~~~~-~l 493 (1058)
.+++ . ..+.+...+. -...++++++. ...+ ++|.++....|.||-... .+... .-
T Consensus 130 yt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r--lIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 130 YTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR--LIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--EEEEecCCceEEEEEEeccccccccccc
Confidence 7632 0 0011122222 34478999998 5555 788888888888875443 22111 11
Q ss_pred eCCCCCeEEEEecccCC---cc-EEEEEeCCCeEEEEeC
Q 001534 494 EGHEAPVYSVCPHHKES---IQ-FIFSTAIDGKIKAWLY 528 (1058)
Q Consensus 494 ~~~~~~v~~~~~~~~~~---~~-~l~s~s~d~~i~~wd~ 528 (1058)
..|...|.+|+|.++.. |. .+++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 12566788999877652 32 7888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.64 E-value=1.7 Score=51.95 Aligned_cols=147 Identities=12% Similarity=0.025 Sum_probs=92.6
Q ss_pred CCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCcee-----EEee------CCCCCeEEEEecccCCccEEEEEeCCCe
Q 001534 454 GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-----YTFE------GHEAPVYSVCPHHKESIQFIFSTAIDGK 522 (1058)
Q Consensus 454 ~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~-----~~l~------~~~~~v~~~~~~~~~~~~~l~s~s~d~~ 522 (1058)
-++..+...+|+....++..+++-.|..||+++-..- .-|. .....+.++.|+|... ...+....|+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccc
Confidence 3566777778877545555566668899998753211 1111 1223455667877654 45667778888
Q ss_pred EEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCC---CCCceeEEEEcCC
Q 001534 523 IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF---RKRSLGVVQFDTT 599 (1058)
Q Consensus 523 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~---~~~~v~~~~~~~~ 599 (1058)
|++..+........--.-....++++|+|.|+.++.+- ..|++.-|... ++....+.+. ....|.+++|-..
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~----nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGR----NNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEec----CCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecc
Confidence 88886654333322222345789999999999999985 47778777643 4443433332 2336889999877
Q ss_pred CCEEEEE
Q 001534 600 RNRFLAA 606 (1058)
Q Consensus 600 ~~~l~~~ 606 (1058)
..++++-
T Consensus 255 ~eflvvy 261 (1405)
T KOG3630|consen 255 QEFLVVY 261 (1405)
T ss_pred eeEEEEe
Confidence 6666663
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=91.62 E-value=6.9 Score=45.86 Aligned_cols=145 Identities=10% Similarity=0.155 Sum_probs=88.2
Q ss_pred CcEEEEEeCCeEEEEECCCceEEE------EecC----------------CCCCeEEEEEeC-CCCCEEEEEeCCCeEEE
Q 001534 852 DSYVMSASGGKVSLFNMMTFKVMT------MFMS----------------PPPAATFLAFHP-QDNNIIAIGMEDSSVQI 908 (1058)
Q Consensus 852 ~~~la~~sdg~i~iwd~~~~~~~~------~~~~----------------~~~~i~~l~~s~-~~~~~lasg~~dg~I~i 908 (1058)
+.+++++..+.|.||+........ .+.. -...|+.|.... .+..+|+.+.+||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 778888889999999986432211 1100 112344444332 15678999999999999
Q ss_pred EEccc-------c----e---------eEEEEeCCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEeCCCCccccceeeec
Q 001534 909 YNVRV-------D----E---------VKTKLKGHQNRITGLAFS--PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA 966 (1058)
Q Consensus 909 wd~~~-------~----~---------~~~~l~~h~~~v~~l~~s--pd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 966 (1058)
|.+.+ . + +...+. -.....+|+++ ...++||.++....|.||-....+......-..
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 97632 0 0 111122 23468889998 778888888888888887655421111100111
Q ss_pred CCCCCCCCCCeeEEEEcCCC---c---EEEE-EeCCeEEEEeC
Q 001534 967 PAGRQSPLVGETKVQFHNDQ---T---HLLV-VHESQISVYDS 1002 (1058)
Q Consensus 967 ~~~~~~~~~~v~~~~fs~d~---~---~l~~-~~d~~i~vwd~ 1002 (1058)
... ..|-+|.|-++. . +|++ .-.|.+.+|++
T Consensus 208 ~~~-----hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHS-----HNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccc-----cCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 222 458999997764 1 4444 37888888887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.49 E-value=5.1 Score=46.11 Aligned_cols=179 Identities=11% Similarity=-0.054 Sum_probs=90.7
Q ss_pred cCCcEEEEEe-C-----CeEEEEECCCceEEEEecCCCCCe-EEEEEeCCCCCEEEEEeCCC--eEEEEEccccee--EE
Q 001534 850 KNDSYVMSAS-G-----GKVSLFNMMTFKVMTMFMSPPPAA-TFLAFHPQDNNIIAIGMEDS--SVQIYNVRVDEV--KT 918 (1058)
Q Consensus 850 ~d~~~la~~s-d-----g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~~lasg~~dg--~I~iwd~~~~~~--~~ 918 (1058)
.++..+++|+ + .++..||..+.+-...-.-+.... .+++ .- ++++.+.|+.++ .+..||..+++- +.
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 3556666665 3 247788887654322111111111 1222 23 678888888643 578888765532 22
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEEeCC
Q 001534 919 KLKGHQNRITGLAFSPTLNALVSSGADA---QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 995 (1058)
Q Consensus 919 ~l~~h~~~v~~l~~spd~~~l~s~s~D~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~~d~ 995 (1058)
.+.........+ .-+|+..+.||.++ .+..||..+.+-.....+..... ...+..-+|+..+.| |
T Consensus 348 ~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~--------~~~~~~~~~~IYv~G--G 415 (480)
T PHA02790 348 SLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHY--------KSCALVFGRRLFLVG--R 415 (480)
T ss_pred CCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccc--------cceEEEECCEEEEEC--C
Confidence 232111111222 23688888887653 47788887754322111111111 112234567766666 4
Q ss_pred eEEEEeCCCCeeeEEee---ccccceEEccCCcEEEEEECC-----CeEEEEcCC
Q 001534 996 QISVYDSKLECSRSVSF---LSLCPYVFGVSSIFLLSTLTK-----LSVAVHDPL 1042 (1058)
Q Consensus 996 ~i~vwd~~~~~~~~~~~---~~~~~~~~s~~~~~l~~~~~d-----~~v~vw~~~ 1042 (1058)
.+.+||...+.-..+.. .....-....+|+..+.|+.+ .++..||+.
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred ceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECC
Confidence 57788883332222222 112222334577777777754 457777765
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.35 E-value=7.7 Score=44.64 Aligned_cols=182 Identities=8% Similarity=-0.107 Sum_probs=80.5
Q ss_pred CCCEEEEEeCCC-----eEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCC--CcEEEEEcCCCceeE
Q 001534 419 DGLMLGVAFSKH-----IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQY 491 (1058)
Q Consensus 419 d~~~l~~~~~d~-----~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d--~~v~vwd~~~~~~~~ 491 (1058)
++..+++|+.++ .+..||..++.-.. ...+....... +++ .-++. +.+.|+.+ .++..||..+++...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~-~~v-~~~~~--iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSPRLYA-SGV-PANNK--LYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCchhhcc-eEE-EECCE--EEEECCcCCCCceEEEECCCCeEEE
Confidence 445566666542 46678877643211 11121111111 222 23555 56666653 468888877654332
Q ss_pred --EeeCCCCCeEEEEecccCCccEEEEEeCCC---eEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCC
Q 001534 492 --TFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1058)
Q Consensus 492 --~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1058)
.+.........+.. +|.+.+.|+.++ .+..||.++..-...-..........+..-+++..+.|+
T Consensus 346 ~~~l~~~r~~~~~~~~----~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG------ 415 (480)
T PHA02790 346 MPSLLKPRCNPAVASI----NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR------ 415 (480)
T ss_pred CCCCCCCCcccEEEEE----CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC------
Confidence 22111111111221 346777777553 466787665432221111111111112223455555543
Q ss_pred ceEEEeeCCCCceeEe--ecCCCCCceeEEEEcCCCCEEEEEeCC-----CeEEEEECCC
Q 001534 567 SHLVEWNESEGAIKRT--YSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDN 619 (1058)
Q Consensus 567 ~~i~~wd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 619 (1058)
.+.+||..+++-... +..... ....+. -+++..++||.+ ..+..||..+
T Consensus 416 -~~e~ydp~~~~W~~~~~m~~~r~-~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 416 -NAEFYCESSNTWTLIDDPIYPRD-NPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred -ceEEecCCCCcEeEcCCCCCCcc-ccEEEE--ECCEEEEECCcCCCcccceEEEEECCC
Confidence 266788876653322 211111 122222 256666777644 2355555554
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=91.29 E-value=11 Score=40.87 Aligned_cols=161 Identities=13% Similarity=0.135 Sum_probs=94.1
Q ss_pred CCCeeEEEEcc-CCcEEEEEeCCe------EEEEECCC--c--eEE-----EEecCCCC--------CeEEEEEeCCCCC
Q 001534 840 EESAACIALSK-NDSYVMSASGGK------VSLFNMMT--F--KVM-----TMFMSPPP--------AATFLAFHPQDNN 895 (1058)
Q Consensus 840 ~~~i~~~~~s~-d~~~la~~sdg~------i~iwd~~~--~--~~~-----~~~~~~~~--------~i~~l~~s~~~~~ 895 (1058)
-+.+..+.+.+ ++++++..++|. +..+++.. + ..+ ..+....+ ..-+|++.+ ++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCC
Confidence 56788999995 566666655566 55555443 1 111 11222222 345788866 788
Q ss_pred EEEEEeCC------CeEEEEEcccceeEEEEe---------------CCCCCeEEEEEcCCCCEEEEEeC-----CC--c
Q 001534 896 IIAIGMED------SSVQIYNVRVDEVKTKLK---------------GHQNRITGLAFSPTLNALVSSGA-----DA--Q 947 (1058)
Q Consensus 896 ~lasg~~d------g~I~iwd~~~~~~~~~l~---------------~h~~~v~~l~~spd~~~l~s~s~-----D~--~ 947 (1058)
++++.-.+ ..|+-++.. |+.+..+. ..+...-+|+++|||+.|.++.+ |+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88776666 678888866 55444331 13456889999999997766543 22 1
Q ss_pred -------EEEEeCC--C-CccccceeeecCCC-CCCCCCCeeEEEEcCCCcEEEEE------eCCeEEEEeC
Q 001534 948 -------LCMWSID--K-WEKLKSRFIQAPAG-RQSPLVGETKVQFHNDQTHLLVV------HESQISVYDS 1002 (1058)
Q Consensus 948 -------i~iwd~~--~-~~~~~~~~~~~~~~-~~~~~~~v~~~~fs~d~~~l~~~------~d~~i~vwd~ 1002 (1058)
++++..+ + ++......+....- .......|..+.+-+|+++|+.= ....++|+.+
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV 248 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence 5555544 3 33333333433320 00012568999999999988872 2345666666
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=90.78 E-value=1.4 Score=44.18 Aligned_cols=79 Identities=13% Similarity=0.180 Sum_probs=56.4
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCccccce-e-eecCCCC----CCCCCCeeEEEEcCCCcEEEEEeCCeEEEEeCCCC
Q 001534 932 FSPTLNALVSSGADAQLCMWSIDKWEKLKSR-F-IQAPAGR----QSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1005 (1058)
Q Consensus 932 ~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~-~-~~~~~~~----~~~~~~v~~~~fs~d~~~l~~~~d~~i~vwd~~~~ 1005 (1058)
+..++++|++.+.+|.+++||+.+++..... . ..+.... ......|..+.++.+|.-|++-.+|..+.|+.+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457899999999999999999998765432 0 1111100 01225689999999999888878899999999665
Q ss_pred eeeEE
Q 001534 1006 CSRSV 1010 (1058)
Q Consensus 1006 ~~~~~ 1010 (1058)
+-..+
T Consensus 98 ~W~~v 102 (219)
T PF07569_consen 98 CWIRV 102 (219)
T ss_pred eeEEe
Confidence 54443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=90.02 E-value=28 Score=36.70 Aligned_cols=166 Identities=11% Similarity=0.087 Sum_probs=89.6
Q ss_pred cEEEEEcCCCceeEEeeC------CCCCeEEEEecccCC----ccEEEEEeCCCeEEEEeCCCCCceEEecCC-------
Q 001534 478 MIKVWDVVAGRKQYTFEG------HEAPVYSVCPHHKES----IQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------- 540 (1058)
Q Consensus 478 ~v~vwd~~~~~~~~~l~~------~~~~v~~~~~~~~~~----~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~------- 540 (1058)
.|.+||+.+++.++++.- ..+....+.+...+. +...++-+..+.|.++|+.+++........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 566788888887776542 234667777765332 334455555678999999886654432211
Q ss_pred ------------CCcEEEEEEcC---CCCEEEEEecCCCCCceEEEeeCCC-----Cc---------eeEeecCCCCCce
Q 001534 541 ------------GNWCTMMAYSA---DGTRLFSCGTSKEGESHLVEWNESE-----GA---------IKRTYSGFRKRSL 591 (1058)
Q Consensus 541 ------------~~~v~~~~~s~---~~~~l~~~~~~~~~~~~i~~wd~~~-----~~---------~~~~~~~~~~~~v 591 (1058)
...+..++.+| ++++|+-.... . -.+|.+.+ .. .+..+ +......
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls---s--~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s 188 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS---S--RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQS 188 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCC---C--CcEEEEEHHHhhCccccccccccccceec-cccCCCC
Confidence 11355666655 66677655421 1 22333221 11 11111 2211245
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceEEEE-ecCCCCCCcceEEEeC--CCCEEEE
Q 001534 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNM---NMLTTV-DADGGLPASPRLRFNK--EGSLLAV 649 (1058)
Q Consensus 592 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~-~~~~~~~~v~~~~~s~--~~~~l~~ 649 (1058)
..++++++|..+++--..+.|..|+.... +....+ ........+..+.+.+ +|.+.+.
T Consensus 189 ~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 189 DGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL 252 (287)
T ss_dssp CEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred ceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Confidence 66888999988888889999999998861 122223 2222234556777777 5544433
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.92 E-value=28 Score=39.08 Aligned_cols=276 Identities=15% Similarity=0.102 Sum_probs=131.8
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEE
Q 001534 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1058)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l 423 (1058)
....+|.++.|.-.|. + -+|+.|| +..+|..+++.++... ......|..+.-+-.|+ |
T Consensus 162 l~d~~V~aLv~D~~g~-l-WvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg~-L 219 (671)
T COG3292 162 LKDTPVVALVFDANGR-L-WVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQGR-L 219 (671)
T ss_pred ccCccceeeeeeccCc-E-EEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcCc-E
Confidence 3567899999999997 3 3466565 5667888877665211 01123455555554554 5
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeE-EeeCCC--CCe
Q 001534 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHE--APV 500 (1058)
Q Consensus 424 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~-~l~~~~--~~v 500 (1058)
.+|+.+| |.+.+..+.+....... -..+.|..+.-..+|. +-.|+..|..+. ....+.... ..+.|. ..|
T Consensus 220 WVGTdqG-v~~~e~~G~~~sn~~~~--lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~v 292 (671)
T COG3292 220 WVGTDQG-VYLQEAEGWRASNWGPM--LPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTV 292 (671)
T ss_pred EEEeccc-eEEEchhhccccccCCC--CcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCccccc
Confidence 5676666 77777665221110000 1123344443333443 444555543322 222222111 111122 233
Q ss_pred EEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcC--CCCEEEEEecCCCCCceEEEeeCCCCc
Q 001534 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA--DGTRLFSCGTSKEGESHLVEWNESEGA 578 (1058)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1058)
.++-.. .+ .-+-+++.++.+++-+-+-..........+..+...+.+| .+..+-... ..+.+.+-+-.+|.
T Consensus 293 nsL~~D--~d-GsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~ 365 (671)
T COG3292 293 NSLWLD--TD-GSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGE 365 (671)
T ss_pred cceeec--cC-CCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCc
Confidence 444332 33 2466666666665443221111111111111111112222 111111111 12335555556677
Q ss_pred eeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEE
Q 001534 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1058)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 657 (1058)
.++......+..|+.+++..++ .+-.++...-+..|+..+ +......... -.++|..+.-.|+++ |..|+.+|.++
T Consensus 366 ~v~sv~q~Rg~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 366 LVRSVHQLRGMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred EEEEeeeccccccchhhhccCC-cEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeEe
Confidence 6666554444467777777644 455555553455666665 3222222222 224677777778887 77888887664
Q ss_pred E
Q 001534 658 I 658 (1058)
Q Consensus 658 i 658 (1058)
.
T Consensus 443 ~ 443 (671)
T COG3292 443 R 443 (671)
T ss_pred c
Confidence 4
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=89.87 E-value=36 Score=37.72 Aligned_cols=148 Identities=9% Similarity=-0.006 Sum_probs=84.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEEccccee--EEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 001534 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961 (1058)
Q Consensus 884 i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~--~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~ 961 (1058)
...+..++ ++.+++.+..-..++-|| .|+. ...-......++++.|.+++..++++ .+|.+ +|..+.++.-..
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 34456677 777777654443333344 2221 11122234568999999999877654 66654 555555531100
Q ss_pred -eeeecCCCCCCCCCCeeEEEEcCCCcEEEEEeCCeEEEEeCCCCeeeEEe---e--ccccceEEccCCcEEEEEECCCe
Q 001534 962 -RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSVS---F--LSLCPYVFGVSSIFLLSTLTKLS 1035 (1058)
Q Consensus 962 -~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~~d~~i~vwd~~~~~~~~~~---~--~~~~~~~~s~~~~~l~~~~~d~~ 1035 (1058)
......... ....+.++.|.+|+..+++|..|.+....-.++.-.... . ..+-.+.|..+++-+++ +.++.
T Consensus 316 ~~f~~~~~~~--~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~ 392 (398)
T PLN00033 316 FDFEEADIKS--RGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGV 392 (398)
T ss_pred cceeecccCC--CCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcE
Confidence 011111110 113489999999999999999998887766443323322 1 23446666666665555 77777
Q ss_pred EEEE
Q 001534 1036 VAVH 1039 (1058)
Q Consensus 1036 v~vw 1039 (1058)
|..|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 7655
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=89.57 E-value=22 Score=38.39 Aligned_cols=173 Identities=19% Similarity=0.242 Sum_probs=95.2
Q ss_pred CcCceEEEEEccCCceEEEeeccce------EEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCee
Q 001534 771 AASKVVRLIYTNSGLSLLALASNAV------HKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAA 844 (1058)
Q Consensus 771 ~~~~i~~l~~s~~g~~l~~~~~dg~------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~ 844 (1058)
.-+.+..+.+.+++..+++.+.+|. +...++...... .+.......+.+-+. .|..... . .....
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~-~G~~~~~------~-~~D~E 88 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGG-IGGVTILDMIPLRDP-DGQPFPK------N-GLDPE 88 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCC-ccceEeccceeccCC-CCCcCCc------C-CCChh
Confidence 4466788999976666777777776 555544431110 001110111111111 1221110 1 23566
Q ss_pred EEEEccCCcEEEEEe-C------CeEEEEECCCceEEEEecC---------------CCCCeEEEEEeCCCCCEEEEEeC
Q 001534 845 CIALSKNDSYVMSAS-G------GKVSLFNMMTFKVMTMFMS---------------PPPAATFLAFHPQDNNIIAIGME 902 (1058)
Q Consensus 845 ~~~~s~d~~~la~~s-d------g~i~iwd~~~~~~~~~~~~---------------~~~~i~~l~~s~~~~~~lasg~~ 902 (1058)
++++.++|.++++.- + ..|..++.. |+....+.- ......+|+++| +|+.|.++.+
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E 166 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAME 166 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEEC
Confidence 888888888888775 6 678888876 665544411 234578899999 8886655443
Q ss_pred CC-------e-------EEEE--Eccc-ceeEE----EEeC-----CCCCeEEEEEcCCCCEEEEE-----eCCCcEEEE
Q 001534 903 DS-------S-------VQIY--NVRV-DEVKT----KLKG-----HQNRITGLAFSPTLNALVSS-----GADAQLCMW 951 (1058)
Q Consensus 903 dg-------~-------I~iw--d~~~-~~~~~----~l~~-----h~~~v~~l~~spd~~~l~s~-----s~D~~i~iw 951 (1058)
.. . ++++ |..+ ++... .+.. ....|+.+.+-+++++|+-= +....++|+
T Consensus 167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~ 246 (326)
T PF13449_consen 167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIY 246 (326)
T ss_pred ccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEE
Confidence 32 1 4554 4443 22222 2222 45678999999999977742 123455666
Q ss_pred eCC
Q 001534 952 SID 954 (1058)
Q Consensus 952 d~~ 954 (1058)
.+.
T Consensus 247 ~v~ 249 (326)
T PF13449_consen 247 RVD 249 (326)
T ss_pred EEE
Confidence 544
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=89.33 E-value=39 Score=37.39 Aligned_cols=198 Identities=13% Similarity=0.023 Sum_probs=106.9
Q ss_pred EEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCC-Ce
Q 001534 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA-PV 500 (1058)
Q Consensus 422 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~-~v 500 (1058)
.+.++..+|.|.-.|.+++..+-...... ....+..-.+..+|+ ++.++.++.+...|..+|+.+........ .+
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLG-AVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcC-cceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 34444677777777777766432111110 112223333333776 77788899999999889999888776551 11
Q ss_pred EEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCC---cEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCC
Q 001534 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN---WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1058)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1058)
..-... .+ ..++.++.++.+...|..++........... .+..-....++. ++.+..+ . ++.+.-.|..+|
T Consensus 146 ~~~~v~--~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~-~-~~~~~a~~~~~G 219 (370)
T COG1520 146 ASPPVV--GD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDG-Y-DGILYALNAEDG 219 (370)
T ss_pred ecCcEE--cC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCC-C-cceEEEEEccCC
Confidence 111111 12 3455555778888888887777666444321 111111122333 3333211 1 446777788888
Q ss_pred ceeEeecCCCCCcee---EEEEcCC-----CCEEEEEeCCCeEEEEECCCCceEEEEecC
Q 001534 578 AIKRTYSGFRKRSLG---VVQFDTT-----RNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1058)
Q Consensus 578 ~~~~~~~~~~~~~v~---~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1058)
......+......-. ....... +.-++.++.++.+...|..+++.+......
T Consensus 220 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 220 TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 877664322210100 0001111 122356667788899999999999888764
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=89.17 E-value=2.3 Score=40.89 Aligned_cols=31 Identities=32% Similarity=0.501 Sum_probs=25.1
Q ss_pred cCeEEEEECCCCC------EEEEEeCCCeEEEEEecC
Q 001534 409 ISVNRCVWGPDGL------MLGVAFSKHIVHLYTYNP 439 (1058)
Q Consensus 409 ~~v~~~~~spd~~------~l~~~~~d~~i~vwd~~~ 439 (1058)
..|.+++|||-|- +||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 3799999999442 788889999999998664
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.96 E-value=1.5 Score=46.64 Aligned_cols=153 Identities=14% Similarity=0.099 Sum_probs=96.5
Q ss_pred CCCeeEEEEccCCcEEEEEeCCeEEEEECCCceEEE-Ee-cCCCC----CeE-EEEEeCCCCCEEEEEeCCCeEEEE-Ec
Q 001534 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT-MF-MSPPP----AAT-FLAFHPQDNNIIAIGMEDSSVQIY-NV 911 (1058)
Q Consensus 840 ~~~i~~~~~s~d~~~la~~sdg~i~iwd~~~~~~~~-~~-~~~~~----~i~-~l~~s~~~~~~lasg~~dg~I~iw-d~ 911 (1058)
...+..+-..|||+.+..-+..++.++++.+...-. .+ ....+ .|+ .+..-. +|.-+.+++.||.|.-| |+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeeee
Confidence 567888999999999998888899999987643211 11 11111 222 222234 67788889999998877 44
Q ss_pred ccc-e----eEEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCC
Q 001534 912 RVD-E----VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 986 (1058)
Q Consensus 912 ~~~-~----~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~ 986 (1058)
..+ . .++.++-...++..+.--.+.+-+++-+..|++.++.-...+.+ ..+... ..+..+++||.+
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l---L~~~~~------~~~~~~~~Sp~~ 369 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL---LFERAY------QAPQLVAMSPNQ 369 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce---ehhhhh------cCcceeeeCccc
Confidence 432 2 12222222234444443334455778888888888765543322 111111 235779999999
Q ss_pred cEEEEEeCCeEEEEeC
Q 001534 987 THLLVVHESQISVYDS 1002 (1058)
Q Consensus 987 ~~l~~~~d~~i~vwd~ 1002 (1058)
.+|++-..|.++++.+
T Consensus 370 ~~Ll~e~~gki~~~~l 385 (733)
T COG4590 370 AYLLSEDQGKIRLAQL 385 (733)
T ss_pred chheeecCCceEEEEe
Confidence 9999988899999999
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=88.05 E-value=19 Score=32.18 Aligned_cols=110 Identities=5% Similarity=0.070 Sum_probs=65.9
Q ss_pred CCceEEEEEcCCCcEEEEEcCCCc--------eeEEeeCCCCCeEEEE---ecccCCccEEEEEeCCCeEEEEeCCCCCc
Q 001534 465 NKQLCIVTCGDDKMIKVWDVVAGR--------KQYTFEGHEAPVYSVC---PHHKESIQFIFSTAIDGKIKAWLYDYLGS 533 (1058)
Q Consensus 465 ~~~~~l~s~~~d~~v~vwd~~~~~--------~~~~l~~~~~~v~~~~---~~~~~~~~~l~s~s~d~~i~~wd~~~~~~ 533 (1058)
|..+.|+.++.-+.|.|++..... .+..|. -...|++++ +.+....+.|+.|+ ...+..||+.....
T Consensus 8 G~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d 85 (136)
T PF14781_consen 8 GVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSD 85 (136)
T ss_pred CCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCch
Confidence 333367888888899999876432 233333 456777776 44444445666665 56788899988766
Q ss_pred eEEecCCCCcEEEEEEcC----CCCEEEEEecCCCCCceEEEeeCCCCceeEe
Q 001534 534 RVDYDAPGNWCTMMAYSA----DGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1058)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~----~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1058)
.+..+.+ ..+.++.+-. +...+++++ +..|.=||....+...+
T Consensus 86 ~Fyke~~-DGvn~i~~g~~~~~~~~l~ivGG-----ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 86 LFYKEVP-DGVNAIVIGKLGDIPSPLVIVGG-----NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred hhhhhCc-cceeEEEEEecCCCCCcEEEECc-----eEEEEEeCCCCcEEEEE
Confidence 6644443 4566665532 344555553 56677777654444433
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.01 E-value=20 Score=39.34 Aligned_cols=150 Identities=10% Similarity=0.108 Sum_probs=89.5
Q ss_pred EEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccC------CccEEEEEeCCCeEEEEeCCCCCc
Q 001534 460 AFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE------SIQFIFSTAIDGKIKAWLYDYLGS 533 (1058)
Q Consensus 460 ~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~------~~~~l~s~s~d~~i~~wd~~~~~~ 533 (1058)
-...+...+++..|+....++--|++.|+.+..+..|..- -+.+.|.. +.+.| .|-.+..|.-.|.+..+.
T Consensus 473 mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gN 549 (776)
T COG5167 473 MLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGN 549 (776)
T ss_pred eeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCC
Confidence 3333444445667777778888899999999988877665 34444432 22334 444555555566665443
Q ss_pred eEEecCCCCcEEEEEEc----CCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCCCceeEEEEcCCCCEEEEEeCC
Q 001534 534 RVDYDAPGNWCTMMAYS----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE 609 (1058)
Q Consensus 534 ~~~~~~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1058)
..........++.-.|| ...-++++++. .|-|++||.-.-+....+++... .|..+..+.+|.++++.+..
T Consensus 550 Ki~v~esKdY~tKn~Fss~~tTesGyIa~as~----kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 550 KIKVVESKDYKTKNKFSSGMTTESGYIAAASR----KGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATCKN 624 (776)
T ss_pred ceeeeeehhccccccccccccccCceEEEecC----CCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEeecc
Confidence 33222222222222222 24457887774 56699999654344444555444 78889999999998887753
Q ss_pred CeEEEEECC
Q 001534 610 FQIKFWDMD 618 (1058)
Q Consensus 610 g~i~iwd~~ 618 (1058)
.+.+-|+.
T Consensus 625 -yllL~d~~ 632 (776)
T COG5167 625 -YLLLTDVP 632 (776)
T ss_pred -eEEEEecc
Confidence 45555543
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=88.01 E-value=73 Score=41.09 Aligned_cols=149 Identities=13% Similarity=0.174 Sum_probs=84.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCCCEEE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l~ 424 (1058)
|-..++.|.-+|+|+.+ = -.|+.++.||..... |... -..-...++.++-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~l-R--lHd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQL-R--LHDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCeE-E--eecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence 34456666777777643 2 247788888877653 2210 011234455566656666665
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCC------ce--eEEeeCC
Q 001534 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG------RK--QYTFEGH 496 (1058)
Q Consensus 425 ~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~------~~--~~~l~~~ 496 (1058)
=+.+ .+-|+..+.... ..-..+.+...+++|.- .+.++.....+.+|++... +. .-.+.+.
T Consensus 419 -k~~~---~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 -KDDD---TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred -cCCC---ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2222 133444433111 12235777888999983 3666776677799988653 11 1223333
Q ss_pred CCCeEEEEecccCCccEEEEEeCCCeEEEEeCCC
Q 001534 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (1058)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~ 530 (1058)
.....+|.+++ ..|+++..+|.++.=++..
T Consensus 488 ~a~A~~VgLs~----drLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLSN----DRLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeecC----CeEEEEeCCCCEEeccccc
Confidence 34556666653 3688888889888777654
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=87.97 E-value=44 Score=36.33 Aligned_cols=188 Identities=12% Similarity=0.145 Sum_probs=102.9
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEeeCCCCCeEEEEecc--cCCccE--EEEEe-CC---CeEEEEeCCCCCc-eEEecC
Q 001534 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH--KESIQF--IFSTA-ID---GKIKAWLYDYLGS-RVDYDA 539 (1058)
Q Consensus 469 ~l~s~~~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~--~~~~~~--l~s~s-~d---~~i~~wd~~~~~~-~~~~~~ 539 (1058)
+++....++-+.+||+ .|+.++.+. .+.++.+..-. .-+|.. |+.++ .+ .+|++|.++.... ...+..
T Consensus 70 lIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 6777788889999995 566777664 23444443211 111221 34443 32 5799998874322 222221
Q ss_pred -------CCCcEEEEEE--cC-CCCEEEEEecCCCCCceEEEeeCC---CC----ceeEeecCCCCCceeEEEEcCCCCE
Q 001534 540 -------PGNWCTMMAY--SA-DGTRLFSCGTSKEGESHLVEWNES---EG----AIKRTYSGFRKRSLGVVQFDTTRNR 602 (1058)
Q Consensus 540 -------~~~~v~~~~~--s~-~~~~l~~~~~~~~~~~~i~~wd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~ 602 (1058)
....++.+++ ++ +|.+.+.... +++.+..|.+. .+ +++++|.... .+..|.......+
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~---k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~ 221 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG---KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGR 221 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE---TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTE
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec---CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCC
Confidence 1124666766 33 4665554442 46667766653 33 4677777654 4778888888889
Q ss_pred EEEEeCCCeEEEEECCC--C---ceEEEEecCCCCCCcceEEEe--CCCC-EE-EEEECCCcEEEEECCCC
Q 001534 603 FLAAGDEFQIKFWDMDN--M---NMLTTVDADGGLPASPRLRFN--KEGS-LL-AVTTSDNGIKILANSDG 664 (1058)
Q Consensus 603 l~~~~~dg~i~iwd~~~--~---~~~~~~~~~~~~~~v~~~~~s--~~~~-~l-~~~~~dg~i~iw~~~~~ 664 (1058)
|+.+-++.-|.-|+.+. + +.+.......-...|-.+++- .+++ || ++.-.+++..+|+....
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999998888888762 1 222222222223356667664 3332 44 44445778999998754
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.53 E-value=7.8 Score=47.73 Aligned_cols=158 Identities=13% Similarity=0.188 Sum_probs=91.3
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEE--------
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW-------- 416 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-------- 416 (1058)
|...=+.+-+-|.=.+.-++ .|+.+.+|+.+++..... +.+-+..|..+..
T Consensus 77 ~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~-------------------~d~~shtIl~V~LvkPkpgvF 135 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAE-------------------YDGLSHTILKVGLVKPKPGVF 135 (1311)
T ss_pred CcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCcccc-------------------ccchhhhheeeeeecCCCCcc
Confidence 33334444444443334443 489999999999665442 3344444555443
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCceeee------eeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcC----C
Q 001534 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQH------LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV----A 486 (1058)
Q Consensus 417 spd~~~l~~~~~d~~i~vwd~~~~~~~~~~------~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~----~ 486 (1058)
-|.=+++++-..--.|.++-+.-.+..... ..+......|+|+....+|+ .+. +|.|| .+|.+. .
T Consensus 136 v~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~dg--~lyEl~Yq~~~ 210 (1311)
T KOG1900|consen 136 VPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGRDG--NLYELVYQAED 210 (1311)
T ss_pred hhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eecCC--CEEEEEEeccC
Confidence 334445555555556777765432221111 12222345789999888887 555 44566 455431 1
Q ss_pred C---c-e----------------eEEee-CCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCC
Q 001534 487 G---R-K----------------QYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (1058)
Q Consensus 487 ~---~-~----------------~~~l~-~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~ 530 (1058)
| + + +-.+. .+..+|..+.+..+ .+.+++-+..|+|.+||+..
T Consensus 211 gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S--R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 211 GWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS--RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred chhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc--cceeeeeccCceEEEEEccC
Confidence 1 1 1 11223 46778999988744 37999999999999999876
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.22 E-value=48 Score=35.95 Aligned_cols=152 Identities=7% Similarity=-0.045 Sum_probs=80.6
Q ss_pred CCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceE--EecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeC
Q 001534 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1058)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1058)
...+.++.+.+ ++.++ ..+..|.+..- .+...... ........++++.+.++++.++++. .+.+++=..
T Consensus 172 ~g~~~~i~~~~--~g~~v-~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSP--DGKYV-AVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDP 242 (334)
T ss_pred cceEEEEEECC--CCeEE-EEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccC
Confidence 45677887765 33444 44555554421 12222211 2223445788999999998877763 444433223
Q ss_pred CCCceeEeecCC---CCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCC-CCCcceEEEeCCCCEEEEE
Q 001534 575 SEGAIKRTYSGF---RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-LPASPRLRFNKEGSLLAVT 650 (1058)
Q Consensus 575 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~ 650 (1058)
..|..-...... ....+..+.+.+++.. ++++.+|.+. .....++.-........ ......+.|..+++.++ .
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-L 319 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCCE-EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-E
Confidence 334322221111 1124677888887764 4555667554 44555554444432111 12466777776666555 5
Q ss_pred ECCCcEEEEE
Q 001534 651 TSDNGIKILA 660 (1058)
Q Consensus 651 ~~dg~i~iw~ 660 (1058)
+..|.|.-|+
T Consensus 320 G~~G~il~~~ 329 (334)
T PRK13684 320 GQRGVLLRYV 329 (334)
T ss_pred CCCceEEEec
Confidence 5667776664
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=87.08 E-value=2.4 Score=28.53 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=23.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCC--CcEEEE
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNV--GDISLW 374 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~d--g~v~iw 374 (1058)
....-.+.+|||||+.++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455778999999999888887777 777666
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=87.08 E-value=77 Score=39.02 Aligned_cols=156 Identities=11% Similarity=0.128 Sum_probs=100.3
Q ss_pred CCCeeEEEEc---c----CCcEEEEEeCCeEEEEEC------CC---------ceEEEEecC---CCCCeEEEEEeCCCC
Q 001534 840 EESAACIALS---K----NDSYVMSASGGKVSLFNM------MT---------FKVMTMFMS---PPPAATFLAFHPQDN 894 (1058)
Q Consensus 840 ~~~i~~~~~s---~----d~~~la~~sdg~i~iwd~------~~---------~~~~~~~~~---~~~~i~~l~~s~~~~ 894 (1058)
..+|..|+|+ . ..++|++-....+.|+.. .. ..++..+.. -..+...++|+|.+.
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~ 158 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQ 158 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCcc
Confidence 7889999998 2 235888877888888872 11 122333332 123678899999778
Q ss_pred CEEEEEeCCCeEEEEEcccc-----eeEEEEeCCCC----------CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc
Q 001534 895 NIIAIGMEDSSVQIYNVRVD-----EVKTKLKGHQN----------RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959 (1058)
Q Consensus 895 ~~lasg~~dg~I~iwd~~~~-----~~~~~l~~h~~----------~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~ 959 (1058)
+.+|+.+..|...||++... ..+.....+.+ .-..+.|.++-+.|+.++.. .+.++|+++....
T Consensus 159 ~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~~~~ 237 (765)
T PF10214_consen 159 RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESNWQT 237 (765)
T ss_pred ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCCCcc
Confidence 89999999999999999211 11111111222 23478899888888877655 4889999986643
Q ss_pred cceeeecCCCCCCCCCCeeEEEEcCCC-cEEEEEeCCeEEEEeC
Q 001534 960 KSRFIQAPAGRQSPLVGETKVQFHNDQ-THLLVVHESQISVYDS 1002 (1058)
Q Consensus 960 ~~~~~~~~~~~~~~~~~v~~~~fs~d~-~~l~~~~d~~i~vwd~ 1002 (1058)
.. +.... ....|.++.-+|+. .+++.-....|...++
T Consensus 238 ~~--l~~~~----~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~ 275 (765)
T PF10214_consen 238 EY--LVTAK----TWSWILDVKRSPDNPSHVFILTSKEIIWLDV 275 (765)
T ss_pred ch--hccCC----ChhheeeEEecCCccceEEEEecCeEEEEEc
Confidence 21 11111 12568888888872 3333445577888887
|
These proteins are found in fungi. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=86.37 E-value=15 Score=44.14 Aligned_cols=74 Identities=14% Similarity=0.205 Sum_probs=53.3
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCCeEEEEEccc----------cee--EE-EE--------eCCCCCeEEEEEcCC---CC
Q 001534 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV----------DEV--KT-KL--------KGHQNRITGLAFSPT---LN 937 (1058)
Q Consensus 882 ~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~----------~~~--~~-~l--------~~h~~~v~~l~~spd---~~ 937 (1058)
-.|..+.++| +|++||..+..| |.|-.+.. |+. .. .+ ..+...|..+.|+|. +.
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 3688899999 999999888865 55544431 111 11 11 234567999999996 57
Q ss_pred EEEEEeCCCcEEEEeCCCCc
Q 001534 938 ALVSSGADAQLCMWSIDKWE 957 (1058)
Q Consensus 938 ~l~s~s~D~~i~iwd~~~~~ 957 (1058)
.|+.-..|+++|+||+...+
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 88889999999999997644
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=86.07 E-value=25 Score=31.48 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=68.8
Q ss_pred eEEEEecCCCeEEEEEeCCCcEEEEEccCcccccc---CcceeecccccccccccccccCCCcCeEEEEECC-----CCC
Q 001534 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH---KPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-----DGL 421 (1058)
Q Consensus 350 ~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-----d~~ 421 (1058)
..-+|....+ -|++++..|.|.|.+......... ..++ +-.-...|++++-.+ +..
T Consensus 2 aiGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~---------------~LNin~~italaaG~l~~~~~~D 65 (136)
T PF14781_consen 2 AIGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDIS---------------FLNINQEITALAAGRLKPDDGRD 65 (136)
T ss_pred eEEEeCCCce-eEEEEecCCEEEEECCCccccccccccCcee---------------EEECCCceEEEEEEecCCCCCcC
Confidence 3445666665 577778899999999875543221 1111 122345677776544 344
Q ss_pred EEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCC--ceEEEEEcCCCcEEEEEcCCCce
Q 001534 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK--QLCIVTCGDDKMIKVWDVVAGRK 489 (1058)
Q Consensus 422 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~--~~~l~s~~~d~~v~vwd~~~~~~ 489 (1058)
.|+.|+. ..+..||+.....+. .+.-...|+++.+-.-+. ..+++.|+ +..|.-+|.+-.+.
T Consensus 66 ~LliGt~-t~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 66 CLLIGTQ-TSLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEI 129 (136)
T ss_pred EEEEecc-ceEEEEEcccCchhh----hhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEE
Confidence 6777654 469999999876553 223456788887743221 21444444 67777777443333
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=85.48 E-value=3.8 Score=28.01 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=28.0
Q ss_pred cCCcEEEEEe--CCeEEEEECCCceEEEEecCCCCCeEEEEE
Q 001534 850 KNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAF 889 (1058)
Q Consensus 850 ~d~~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 889 (1058)
||+++|.++. +++|.++|..+++.+..+.. ......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5788777776 68999999999888877764 233344444
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.38 E-value=17 Score=39.84 Aligned_cols=138 Identities=12% Similarity=0.116 Sum_probs=82.1
Q ss_pred EEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCCC--------CEEEEEecCCCCCceEEEeeCCC-CceeEee-
Q 001534 514 IFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG--------TRLFSCGTSKEGESHLVEWNESE-GAIKRTY- 583 (1058)
Q Consensus 514 l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~--------~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~- 583 (1058)
+..|+....++--|++.++.+-.+..+... -+.|.|+. ..|+..+ +..|.-.|.+- |..+...
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-----~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-----DYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-----ccceEEecccccCCceeeee
Confidence 344455566666777777777777766544 45666643 3344433 33455556552 3222211
Q ss_pred -cCC-CCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEEC
Q 001534 584 -SGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1058)
Q Consensus 584 -~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 661 (1058)
+.. .....++. ......++++++..|.|++||.-..+....++.-+. .|..+..+.+|+++++.+.. .+.+.|+
T Consensus 556 sKdY~tKn~Fss~-~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk~idvta~Gk~ilaTCk~-yllL~d~ 631 (776)
T COG5167 556 SKDYKTKNKFSSG-MTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIKHIDVTANGKHILATCKN-YLLLTDV 631 (776)
T ss_pred ehhcccccccccc-ccccCceEEEecCCCceeeehhhcchhhhcCccccc--ceeeeEeecCCcEEEEeecc-eEEEEec
Confidence 111 11122222 223456899999999999999765554455555444 68889999999998877654 6767665
Q ss_pred C
Q 001534 662 S 662 (1058)
Q Consensus 662 ~ 662 (1058)
.
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 3
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=85.34 E-value=45 Score=33.80 Aligned_cols=230 Identities=10% Similarity=0.022 Sum_probs=133.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCce
Q 001534 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489 (1058)
Q Consensus 410 ~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~ 489 (1058)
.-..++-.|||..-.++...+.|--.|-.+|+... .--+....-..|..-|||. .-++-+.. -|.-.|-++.+.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~---ypLg~Ga~Phgiv~gpdg~--~Witd~~~-aI~R~dpkt~ev 136 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVET---YPLGSGASPHGIVVGPDGS--AWITDTGL-AIGRLDPKTLEV 136 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEE---EecCCCCCCceEEECCCCC--eeEecCcc-eeEEecCcccce
Confidence 44567888999888888888878777888876543 1123344456677778887 33332222 455556555443
Q ss_pred eE-Eee--CCCCCeEEEEecccCCccEEEEEeCC---------CeEEEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEE
Q 001534 490 QY-TFE--GHEAPVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1058)
Q Consensus 490 ~~-~l~--~~~~~v~~~~~~~~~~~~~l~s~s~d---------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1058)
.. .+. .-........|. +.|++-+++... +.|++|+.. .+..-+.|+..|||..-+
T Consensus 137 t~f~lp~~~a~~nlet~vfD--~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwy 204 (353)
T COG4257 137 TRFPLPLEHADANLETAVFD--PWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWY 204 (353)
T ss_pred EEeecccccCCCcccceeeC--CCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEE
Confidence 21 222 223445566665 445666666421 234444332 234567888999999877
Q ss_pred EEecCCCCCceEEEeeCCCCceeE--eecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEecCCCCCCc
Q 001534 558 SCGTSKEGESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1058)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1058)
+.-. .+.|-..|..++.... .-...+. ..+.+.-+|.|..-++....+.+..+|..... -......+....-
T Consensus 205 asla----gnaiaridp~~~~aev~p~P~~~~~-gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arp 278 (353)
T COG4257 205 ASLA----GNAIARIDPFAGHAEVVPQPNALKA-GSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARP 278 (353)
T ss_pred Eecc----ccceEEcccccCCcceecCCCcccc-cccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCc
Confidence 6542 4557777776653211 1111111 34556667888888887788888888877644 4444444444444
Q ss_pred ceEEEeCCCCEEEEEECCCcEEEEECCC
Q 001534 636 PRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1058)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1058)
.++.....+..-.+--..|.|.-+|.++
T Consensus 279 ys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 279 YSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred ceeeeccCCcEEeeccccCceeecCccc
Confidence 5666655555544444445555555544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.29 E-value=30 Score=40.25 Aligned_cols=221 Identities=9% Similarity=0.085 Sum_probs=107.3
Q ss_pred ceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEccCCc
Q 001534 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 853 (1058)
Q Consensus 774 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d~~ 853 (1058)
.+..+.|+.+.. |++...+|++.+|++........+. |.. . . ...|..+.|..+|-
T Consensus 85 ~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~sv--------------g~e----~----~-~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 85 ELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSV--------------GFE----S----Q-MSDIVECRFFHNGV 140 (829)
T ss_pred CeeeecccCCce-EEEEeccceEEEeecchhhhccccc--------------ccc----c----c-cCceeEEEEecCce
Confidence 677888887766 7788899999999875332211100 000 0 1 34455566666776
Q ss_pred EEEEEeCCeEEEEECCCceEEEEecC-CCCCe--EEEEEeCCCCC--EEE-EEeCCCeEEEEEcc--cceeEEEEeCCCC
Q 001534 854 YVMSASGGKVSLFNMMTFKVMTMFMS-PPPAA--TFLAFHPQDNN--IIA-IGMEDSSVQIYNVR--VDEVKTKLKGHQN 925 (1058)
Q Consensus 854 ~la~~sdg~i~iwd~~~~~~~~~~~~-~~~~i--~~l~~s~~~~~--~la-sg~~dg~I~iwd~~--~~~~~~~l~~h~~ 925 (1058)
.+.+.++.-+.+-+.... .++.++. +.... +|-+.-+++.. .++ ..-..+ ..+.-.. ..+. ..+.....
T Consensus 141 avlt~~g~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~-~~~~~~~~ 217 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQL-HALSWPNS 217 (829)
T ss_pred EEEecCCcEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccc-cccCCCCc
Confidence 666555544555554432 2222222 12222 22222220111 111 110111 0111111 1121 12222235
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEEcCCCcEEEEEeCCeEEEEeCCCC
Q 001534 926 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1005 (1058)
Q Consensus 926 ~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~~d~~i~vwd~~~~ 1005 (1058)
.+..+..||+.++|+--..+|.|.+-+++..++...... ..+ .+...++|..+...+ ..-+..+.+....+.
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~---~~~----~~p~qm~WcgndaVv-l~~e~~l~lvgp~gd 289 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC---TDH----DPPKQMAWCGNDAVV-LSWEVNLMLVGPPGD 289 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC---CCC----CchHhceeecCCceE-EEEeeeEEEEcCCCC
Confidence 688899999999999999999998888887554322111 112 122467776665322 223333444444343
Q ss_pred eeeEEeeccccceEEccCCcEEEEE
Q 001534 1006 CSRSVSFLSLCPYVFGVSSIFLLST 1030 (1058)
Q Consensus 1006 ~~~~~~~~~~~~~~~s~~~~~l~~~ 1030 (1058)
.+.-+-.... .+.-.+||-.+++.
T Consensus 290 ~V~f~yd~t~-~l~~E~DGVRI~t~ 313 (829)
T KOG2280|consen 290 SVQFYYDETA-ILSAEVDGVRIITS 313 (829)
T ss_pred ccccccCCCc-eeeeccCeeEEecc
Confidence 3333322222 14445567666663
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.02 E-value=49 Score=33.93 Aligned_cols=166 Identities=11% Similarity=0.036 Sum_probs=97.8
Q ss_pred eEeecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCC
Q 001534 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1058)
Q Consensus 340 ~~~~~h~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd 419 (1058)
+..+...+-+..+.|+.+- +..+..+.-++|.|+.+........+ +. -.+--.++.. .
T Consensus 80 ~~~i~~~~l~~Dv~vse~y---vyvad~ssGL~IvDIS~P~sP~~~~~----------------ln-t~gyaygv~v--s 137 (370)
T COG5276 80 LSVINARDLFADVRVSEEY---VYVADWSSGLRIVDISTPDSPTLIGF----------------LN-TDGYAYGVYV--S 137 (370)
T ss_pred EEEEehhhhhheeEecccE---EEEEcCCCceEEEeccCCCCcceecc----------------cc-CCceEEEEEe--c
Confidence 3444466778889998763 44556677899999988665432111 11 1122333444 6
Q ss_pred CCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEee--CCC
Q 001534 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE--GHE 497 (1058)
Q Consensus 420 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~--~~~ 497 (1058)
|++..++.-|.-+.+.|+.+.........+......-..++.| |+ +-..+..|+-+.+-|+.......-+. ...
T Consensus 138 Gn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn--~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g 213 (370)
T COG5276 138 GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GN--YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTG 213 (370)
T ss_pred CCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cC--eEEEEEeCCCeEEEEccCCCCCeEEEEEecC
Confidence 7888888756567888998876554433444444455677777 55 45666788999999987654322111 122
Q ss_pred CCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceE
Q 001534 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV 535 (1058)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~ 535 (1058)
..+.++..+++ +....-.+--+.+-|........
T Consensus 214 ~g~~sv~vsdn----r~y~vvy~egvlivd~s~~ssp~ 247 (370)
T COG5276 214 PGTYSVSVSDN----RAYLVVYDEGVLIVDVSGPSSPT 247 (370)
T ss_pred CceEEEEecCC----eeEEEEcccceEEEecCCCCCce
Confidence 35677666532 33333334455666766655444
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=84.87 E-value=1.1e+02 Score=39.48 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=49.5
Q ss_pred ceeEEEEcCCCCE-EEEEeCCCeEEEEECCCC------ceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECC
Q 001534 590 SLGVVQFDTTRNR-FLAAGDEFQIKFWDMDNM------NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1058)
Q Consensus 590 ~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1058)
.+.+...++++.. ++++-+...+.+|++... +....+...++.....+|.++++ .|+++..+|.++.=++.
T Consensus 439 ~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--rLFvADseGkLYsa~l~ 516 (1774)
T PF11725_consen 439 KLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--RLFVADSEGKLYSADLP 516 (1774)
T ss_pred hcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC--eEEEEeCCCCEEecccc
Confidence 4566777899887 444555566799998753 22234444445556778888877 68889999998877664
Q ss_pred C
Q 001534 663 D 663 (1058)
Q Consensus 663 ~ 663 (1058)
.
T Consensus 517 ~ 517 (1774)
T PF11725_consen 517 A 517 (1774)
T ss_pred c
Confidence 3
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.72 E-value=4.7 Score=43.13 Aligned_cols=165 Identities=14% Similarity=0.131 Sum_probs=98.3
Q ss_pred ccCCCcCeEEEEECCCCCEEEEEeCCCeEEEEEecCCCceeeeeeeecCcC----CeE-EEEEecCCCceEEEEEcCCCc
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG----GVN-DIAFAHPNKQLCIVTCGDDKM 478 (1058)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~h~~----~v~-~~~fs~d~~~~~l~s~~~d~~ 478 (1058)
+......|..+-..|||+.|..-+. ..+.|+++.+...-.. +......+ .|+ .+..-..|. -+..++.||.
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-kl~~dspg~~~~~Vte~l~lL~Gg~--SLLv~~~dG~ 291 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-KLVDDSPGDSRHQVTEQLYLLSGGF--SLLVVHEDGL 291 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-hhhhcCCCchHHHHHHHHHHHhCce--eEEEEcCCCc
Confidence 4455677888999999998877655 6788999876432111 11111111 122 122222344 5777888999
Q ss_pred EEEE-EcCCCc-----eeEEeeCCCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCCCCceEEecCCCCcEEEEEEcCC
Q 001534 479 IKVW-DVVAGR-----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD 552 (1058)
Q Consensus 479 v~vw-d~~~~~-----~~~~l~~~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 552 (1058)
|.-| |+..+- .++.++-....+..+. |..+.+-+++-+.+|++.++.-...+... +..--....-+++||+
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~--pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~ 368 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLL--PETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPN 368 (733)
T ss_pred eeeeeeeecCCCCcceeeeccccCcccceeec--cccccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCcc
Confidence 9888 554432 1222222233444443 44555778888899998888644333322 2222235667899999
Q ss_pred CCEEEEEecCCCCCceEEEeeCCCCcee
Q 001534 553 GTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1058)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1058)
+.++++- ..+.++++.+.+..+-
T Consensus 369 ~~~Ll~e-----~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 369 QAYLLSE-----DQGKIRLAQLENRNPE 391 (733)
T ss_pred cchheee-----cCCceEEEEecCCCCC
Confidence 9999875 3566888877665443
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=84.66 E-value=4.3 Score=39.08 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCC------CEEEEEeCCCcEEEEeCCC
Q 001534 925 NRITGLAFSPTL------NALVSSGADAQLCMWSIDK 955 (1058)
Q Consensus 925 ~~v~~l~~spd~------~~l~s~s~D~~i~iwd~~~ 955 (1058)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999944 4688899999999998774
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=84.33 E-value=6.1 Score=39.60 Aligned_cols=66 Identities=11% Similarity=0.131 Sum_probs=50.2
Q ss_pred EeCCCCCEEEEEeCCCeEEEEEcccceeEEE-------Ee-------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001534 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-------LK-------GHQNRITGLAFSPTLNALVSSGADAQLCMWSID 954 (1058)
Q Consensus 889 ~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~-------l~-------~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~ 954 (1058)
+.. .+.+|.+-+.+|.+++||+.+++++.. +. .....|..+.++.+|.-+++-+ +|..+.|+.+
T Consensus 18 l~~-~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LEC-NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEe-CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 444 677899999999999999998875432 22 3556789999998888887765 4678899876
Q ss_pred CC
Q 001534 955 KW 956 (1058)
Q Consensus 955 ~~ 956 (1058)
-+
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 43
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=84.11 E-value=74 Score=35.28 Aligned_cols=13 Identities=15% Similarity=0.044 Sum_probs=8.6
Q ss_pred cEEEEEcCCCcee
Q 001534 478 MIKVWDVVAGRKQ 490 (1058)
Q Consensus 478 ~v~vwd~~~~~~~ 490 (1058)
.+..||..+.+..
T Consensus 107 ~v~~YD~~~n~W~ 119 (376)
T PRK14131 107 DVYKYDPKTNSWQ 119 (376)
T ss_pred cEEEEeCCCCEEE
Confidence 4777888776543
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.08 E-value=54 Score=33.64 Aligned_cols=194 Identities=12% Similarity=0.070 Sum_probs=109.9
Q ss_pred cCCeEEEEEecCCCceEEEEEcCCCcEEEEEcCCCceeEEeeC--CCCCeEEEEecccCCccEEEEEeCCCeEEEEeCCC
Q 001534 453 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (1058)
Q Consensus 453 ~~~v~~~~fs~d~~~~~l~s~~~d~~v~vwd~~~~~~~~~l~~--~~~~v~~~~~~~~~~~~~l~s~s~d~~i~~wd~~~ 530 (1058)
..-+..+.++.+ +...+..+.-++|.|+.+......+.. ..+.-.++..+ |++...+..|.-+.+.|+.+
T Consensus 86 ~~l~~Dv~vse~----yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs----Gn~aYVadlddgfLivdvsd 157 (370)
T COG5276 86 RDLFADVRVSEE----YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS----GNYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred hhhhheeEeccc----EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec----CCEEEEeeccCcEEEEECCC
Confidence 445677888743 566677778899999987654332211 11333444433 46888888777788889887
Q ss_pred CCceE---EecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCCCc---eeEeecCCCCCceeEEEEcCCCCEEE
Q 001534 531 LGSRV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRKRSLGVVQFDTTRNRFL 604 (1058)
Q Consensus 531 ~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~ 604 (1058)
..... ...........++.|-+-.+++ .. ++-+.+.|+.... .+.... .++.+.++..+++..+++
T Consensus 158 pssP~lagrya~~~~d~~~v~ISGn~AYvA--~~----d~GL~ivDVSnp~sPvli~~~n--~g~g~~sv~vsdnr~y~v 229 (370)
T COG5276 158 PSSPQLAGRYALPGGDTHDVAISGNYAYVA--WR----DGGLTIVDVSNPHSPVLIGSYN--TGPGTYSVSVSDNRAYLV 229 (370)
T ss_pred CCCceeeeeeccCCCCceeEEEecCeEEEE--Ee----CCCeEEEEccCCCCCeEEEEEe--cCCceEEEEecCCeeEEE
Confidence 66544 3444444456667665444443 22 4458888886543 222222 222567777776654444
Q ss_pred EEeCCCeEEEEECCCCceEEEEecCCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001534 605 AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
.. +.-+.+-|..+.+....+.......++..-.+.-.+++...+..+.-+.+-|+.+.
T Consensus 230 vy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 230 VY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred Ec--ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCC
Confidence 43 33466777776664444433222222222133345667777766666666666543
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=83.95 E-value=96 Score=36.45 Aligned_cols=40 Identities=8% Similarity=0.161 Sum_probs=28.4
Q ss_pred ceeEeecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001534 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1058)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 617 (1058)
+......|.-...|-..+||.|.+.++....+..|-+++-
T Consensus 102 e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 102 ELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred cchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 3334444544447888999999998888777788888763
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=83.70 E-value=62 Score=38.09 Aligned_cols=186 Identities=8% Similarity=-0.031 Sum_probs=98.9
Q ss_pred CeeEEEEccCCcEEEEEe-CC-eEEEEECCCceE----E-EEecCCCCCeEEEEEeCCCCCEEEEEeC--CC--eEEEEE
Q 001534 842 SAACIALSKNDSYVMSAS-GG-KVSLFNMMTFKV----M-TMFMSPPPAATFLAFHPQDNNIIAIGME--DS--SVQIYN 910 (1058)
Q Consensus 842 ~i~~~~~s~d~~~la~~s-dg-~i~iwd~~~~~~----~-~~~~~~~~~i~~l~~s~~~~~~lasg~~--dg--~I~iwd 910 (1058)
.+.+.+.|+++..+|..+ ++ .+.+..+..+.. . ..+. ....+.-.|.+ ++ .+-+... ++ .+++..
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~-~g-~vWtvd~~~~~~~vl~v~~ 439 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDG-RG-DLWVVDRDPADPRLLWLLQ 439 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcC-CC-CEEEecCCCCCceEEEEEc
Confidence 678999999999998877 44 466655433222 1 1122 23466667777 55 3444322 22 255554
Q ss_pred cccceeEE-EEeCCCC-CeEEEEEcCCCCEEEEEeC---CCcEEEEeCCC---CccccceeeecCCCCCCCCCCeeEEEE
Q 001534 911 VRVDEVKT-KLKGHQN-RITGLAFSPTLNALVSSGA---DAQLCMWSIDK---WEKLKSRFIQAPAGRQSPLVGETKVQF 982 (1058)
Q Consensus 911 ~~~~~~~~-~l~~h~~-~v~~l~~spd~~~l~s~s~---D~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~f 982 (1058)
- +|+... ......+ .|+.+..|+||..+|.... .+.|.|=-+.. |+..-........+. ..+.++.|
T Consensus 440 ~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l----~~v~~~~W 514 (599)
T PRK13613 440 G-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPEL----EDVTDMSW 514 (599)
T ss_pred C-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCC----CccceeEE
Confidence 2 444321 1112223 7999999999998776543 35555554432 321111111122222 34899999
Q ss_pred cCCCcEEEEE--eCCeEEEEeC--CCCeeeEEe---eccccceEEccCCcEEEEE-ECCCeE
Q 001534 983 HNDQTHLLVV--HESQISVYDS--KLECSRSVS---FLSLCPYVFGVSSIFLLST-LTKLSV 1036 (1058)
Q Consensus 983 s~d~~~l~~~--~d~~i~vwd~--~~~~~~~~~---~~~~~~~~~s~~~~~l~~~-~~d~~v 1036 (1058)
..++.+++.+ .++..-+|-+ .+....... ......++-+.+...++.+ ..++.|
T Consensus 515 ~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 515 AGDSQLVVLGREEGGVQQARYVQVDGSTPPASAPAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred cCCCEEEEEeccCCCCcceEEEecCCcCcccccccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 9999988865 3334445554 444332111 1234445556555534443 555554
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=83.49 E-value=60 Score=33.72 Aligned_cols=228 Identities=12% Similarity=0.142 Sum_probs=124.4
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEecCC----Cceeeeeeeec-----CcCCeEEEEEecCCCc----------eEEE
Q 001534 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPT----GELRQHLEIDA-----HVGGVNDIAFAHPNKQ----------LCIV 471 (1058)
Q Consensus 411 v~~~~~spd~~~l~~~~~d~~i~vwd~~~~----~~~~~~~~~~~-----h~~~v~~~~fs~d~~~----------~~l~ 471 (1058)
-+.|+++|.+.+-++....+...+||.... ........+.. -....+.+.|+..... ..++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 467999999988888888889999998721 11011112221 2345778888754321 1367
Q ss_pred EEcCCCcEEEEEcCCCce-----eEEee-CCCCCe-EEEEecccCCccEEEEE-eCCCeEEEEeCCCCCceE--EecCCC
Q 001534 472 TCGDDKMIKVWDVVAGRK-----QYTFE-GHEAPV-YSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRV--DYDAPG 541 (1058)
Q Consensus 472 s~~~d~~v~vwd~~~~~~-----~~~l~-~~~~~v-~~~~~~~~~~~~~l~s~-s~d~~i~~wd~~~~~~~~--~~~~~~ 541 (1058)
.+++||+|.-|...-+.. ...+. ...+.| ..+++.....+++|+.+ -..++|.++|-.-..... .+....
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 788999999998543322 11221 112333 34555544444555555 457889999754322111 010000
Q ss_pred CcEEEEEEcC------CCCEEEEEec---------CCCCCceEEEeeCCCCceeEeecCCC-CCceeEEEEcC------C
Q 001534 542 NWCTMMAYSA------DGTRLFSCGT---------SKEGESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDT------T 599 (1058)
Q Consensus 542 ~~v~~~~~s~------~~~~l~~~~~---------~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~------~ 599 (1058)
+ -.-|.| .++.+++-.. .+.+.+.|-+||.. |+.++++.... -..-..++..| .
T Consensus 185 --i-PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 185 --L-PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred --C-CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 0 000111 1222222111 11245789999975 78888774321 11233455543 3
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEecCCCC----CCcceEEEeC
Q 001534 600 RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL----PASPRLRFNK 642 (1058)
Q Consensus 600 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~~~~s~ 642 (1058)
+..|+---.||+|..+|..+++.+..+...... .....++|..
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 455655557999999999999988887654432 2244566654
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.97 E-value=31 Score=43.36 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=28.2
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccc
Q 001534 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRER 381 (1058)
Q Consensus 347 ~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~ 381 (1058)
.....++|+|... ++|.|+.+|.|+++-...-+.
T Consensus 36 ~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve~ 69 (993)
T KOG1983|consen 36 STPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVEF 69 (993)
T ss_pred CCCcceeeccccc-eEEEEEecccEEEecccceEE
Confidence 4667889999987 899999999999998765443
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=82.89 E-value=12 Score=37.81 Aligned_cols=116 Identities=10% Similarity=0.065 Sum_probs=64.5
Q ss_pred CCCeeEEEEccCCcEEEEEe--CC--eEEEEECCC--ceEEEE-ec---CCCCCeEEEEEeCCCCCEEEEEeCCC-eEEE
Q 001534 840 EESAACIALSKNDSYVMSAS--GG--KVSLFNMMT--FKVMTM-FM---SPPPAATFLAFHPQDNNIIAIGMEDS-SVQI 908 (1058)
Q Consensus 840 ~~~i~~~~~s~d~~~la~~s--dg--~i~iwd~~~--~~~~~~-~~---~~~~~i~~l~~s~~~~~~lasg~~dg-~I~i 908 (1058)
.....+-++-+||++|.+|+ +| .+++++..+ ..+-.. .. .....-.....-| ||+.|+.|+.+. +..+
T Consensus 66 d~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~-DG~vlIvGG~~~~t~E~ 144 (243)
T PF07250_consen 66 DTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP-DGRVLIVGGSNNPTYEF 144 (243)
T ss_pred CCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC-CCCEEEEeCcCCCcccc
Confidence 33344456789999999997 43 488888654 111111 10 1112223344456 888888888775 3455
Q ss_pred EEccc-c-eeEE--EEe-----CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 001534 909 YNVRV-D-EVKT--KLK-----GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 958 (1058)
Q Consensus 909 wd~~~-~-~~~~--~l~-----~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~ 958 (1058)
|.-.. . .... -+. ....----+...|||++++.+..+. .|||..+.+.
T Consensus 145 ~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v 201 (243)
T PF07250_consen 145 WPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTV 201 (243)
T ss_pred cCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeE
Confidence 55321 1 1111 111 0111122466789999999888765 5678887653
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=82.72 E-value=77 Score=36.45 Aligned_cols=119 Identities=14% Similarity=0.119 Sum_probs=63.1
Q ss_pred EEEcCCCCEEEEEecCCCCCceEEEeeCCCCceeEeecCCCC--CceeEEEEcCCCCEEEEEeC-------------CCe
Q 001534 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--RSLGVVQFDTTRNRFLAAGD-------------EFQ 611 (1058)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~-------------dg~ 611 (1058)
+...++|.+++... ..+..+|+- |+.+..+..... ..-..+...|+|++|+.+.. .-.
T Consensus 153 ~~~l~nG~ll~~~~------~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~ 225 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG------NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDV 225 (477)
T ss_dssp EEE-TTS-EEEEEB------TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-E
T ss_pred eeEcCCCCEEEecC------CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCE
Confidence 56678998887653 558888875 666555443321 01234778899999888772 123
Q ss_pred EEEEECCCCceEEEEecCCCC-------------------------CCcceEEEeC-CCCEEEEEECCCcEEEEECCCCc
Q 001534 612 IKFWDMDNMNMLTTVDADGGL-------------------------PASPRLRFNK-EGSLLAVTTSDNGIKILANSDGV 665 (1058)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~~-------------------------~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~ 665 (1058)
|..+| .+|+.+..+....+. ..++++.+.+ ++.+++++-.-..|...|..++
T Consensus 226 Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~- 303 (477)
T PF05935_consen 226 IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG- 303 (477)
T ss_dssp EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-
T ss_pred EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCC-
Confidence 55666 777777665432211 2467899998 5555555554558888887777
Q ss_pred eeeecccCC
Q 001534 666 RLLRMLEGR 674 (1058)
Q Consensus 666 ~~~~~~~~~ 674 (1058)
++...+..+
T Consensus 304 ~i~Wilg~~ 312 (477)
T PF05935_consen 304 KIKWILGPP 312 (477)
T ss_dssp -EEEEES-S
T ss_pred cEEEEeCCC
Confidence 555555444
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.83 E-value=0.19 Score=53.92 Aligned_cols=148 Identities=17% Similarity=0.220 Sum_probs=0.0
Q ss_pred CcCceEEEEEccCCceEEEeeccceEEEEEcccCCCCCCCcccccccccccCCCCCCccccccCCCCCCCCCeeEEEEcc
Q 001534 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1058)
Q Consensus 771 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1058)
+........+.+.+.-++.++.+..+..|| ..|+.+.. ... .+....++|+.
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD-----------------------~agq~~le-~n~----tg~aldm~wDk 84 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYD-----------------------KAGQVILE-LNP----TGKALDMAWDK 84 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhh-----------------------hhcceecc-cCC----chhHhhhhhcc
Q ss_pred CCcEEEEEe--CCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccceeEEEEeCCCCCeE
Q 001534 851 NDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 928 (1058)
Q Consensus 851 d~~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~ 928 (1058)
+|..++... .+.+.+||+.+......-.+-...-.-+.|++ +...++.|...|.+.|++-.+.+.+...-.|..+++
T Consensus 85 egdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgt 163 (615)
T KOG2247|consen 85 EGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGT 163 (615)
T ss_pred ccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhccccccee
Q ss_pred EEEEcCCCCEEEEEeCCCcE
Q 001534 929 GLAFSPTLNALVSSGADAQL 948 (1058)
Q Consensus 929 ~l~~spd~~~l~s~s~D~~i 948 (1058)
++++.+.+ +.+.++.|..+
T Consensus 164 q~av~lEd-~vil~dcd~~L 182 (615)
T KOG2247|consen 164 QIAVTLED-YVILCDCDNTL 182 (615)
T ss_pred EEEecccc-eeeecCcHHHH
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.46 E-value=40 Score=37.37 Aligned_cols=39 Identities=8% Similarity=0.160 Sum_probs=30.4
Q ss_pred ceeEEEEcCCC---CEEEEEeCCCeEEEEECCCCceEEEEec
Q 001534 590 SLGVVQFDTTR---NRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1058)
Q Consensus 590 ~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1058)
.+..++|+|+. ..+..-+.|.+||+||+.....+....+
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCC
Confidence 46678899975 6788888999999999988776654443
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=81.09 E-value=67 Score=32.65 Aligned_cols=145 Identities=14% Similarity=0.127 Sum_probs=76.7
Q ss_pred EEEeCCCCCceEEecCCCCcEEEEEEcCCCCEEEEEecCCCCCceEEEeeCCC--Cce-eEeec--CCCCCceeEEEEcC
Q 001534 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE--GAI-KRTYS--GFRKRSLGVVQFDT 598 (1058)
Q Consensus 524 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~-~~~~~--~~~~~~v~~~~~~~ 598 (1058)
.+||+.+.+...........+.+-.+-+||+.+.+++. .++...+++++..+ +.+ ..... -.....-..+..-|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 35676665443322222334445567789999888874 34566788888654 011 11110 01111333455678
Q ss_pred CCCEEEEEeCCC-eEEEEECCC-CceEEEE---ec---CCCCCCcceEEEeCCCCEEEEEECCCcEEEEECCCCceeeec
Q 001534 599 TRNRFLAAGDEF-QIKFWDMDN-MNMLTTV---DA---DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 670 (1058)
Q Consensus 599 ~~~~l~~~~~dg-~i~iwd~~~-~~~~~~~---~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 670 (1058)
||+.++.||... +..+|.... ......+ .. .....--..+-..|+|+.++.+..+ -.|||..++ ..++.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n-~v~~~ 204 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTN-TVVRT 204 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCC-eEEee
Confidence 999999988664 345555422 1111111 10 0111122356677999999888765 456788776 33344
Q ss_pred cc
Q 001534 671 LE 672 (1058)
Q Consensus 671 ~~ 672 (1058)
+.
T Consensus 205 lP 206 (243)
T PF07250_consen 205 LP 206 (243)
T ss_pred CC
Confidence 43
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=80.98 E-value=1.2e+02 Score=35.36 Aligned_cols=152 Identities=11% Similarity=0.011 Sum_probs=87.9
Q ss_pred eeEEEEccCCcEEEEEe-CCeEEEEECCCceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcc-cceeEE-E
Q 001534 843 AACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKT-K 919 (1058)
Q Consensus 843 i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~-~~~~~~-~ 919 (1058)
..+++.|+|+..+|... ++.+.++... +.....+. ....+.-.|.+ ++ .+-+...+...++.... +|+... .
T Consensus 336 ~~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~-~g-~vWtv~~g~~~~l~~~~~~G~~~~v~ 410 (557)
T PRK13615 336 ADAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDA-QG-YVWSTPASDPRGLVAWGPDGVGHPVA 410 (557)
T ss_pred cccceEcCCCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcC-CC-CEEEEeCCCceEEEEecCCCceEEee
Confidence 47899999999998887 6777777665 22222222 23466667777 55 55454443344544433 233211 1
Q ss_pred EeC-CCCCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCC-Cc---cccceeeecCCCCCCCCCCeeEEEEcCCCcEEEE
Q 001534 920 LKG-HQNRITGLAFSPTLNALVSSGA---DAQLCMWSIDK-WE---KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1058)
Q Consensus 920 l~~-h~~~v~~l~~spd~~~l~s~s~---D~~i~iwd~~~-~~---~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~ 991 (1058)
..- -...|+.+..|+||..+|.... .+.|.|=-+.. +. .+.........+. ..+.++.|..++.+.+.
T Consensus 411 v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l----~~v~sl~W~~~~~laVl 486 (557)
T PRK13615 411 VSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASP----GTPLDATWVDELDVATL 486 (557)
T ss_pred ccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCc----CcceeeEEcCCCEEEEE
Confidence 111 2357999999999998776543 35566544433 11 1101111121111 46899999999998666
Q ss_pred E----eCCeEEEEeCC
Q 001534 992 V----HESQISVYDSK 1003 (1058)
Q Consensus 992 ~----~d~~i~vwd~~ 1003 (1058)
+ .+..+++..+.
T Consensus 487 ~~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 487 TLAPDGERQVELHQVG 502 (557)
T ss_pred eccCCCCceEEEEECC
Confidence 4 23557777773
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=80.58 E-value=93 Score=33.96 Aligned_cols=149 Identities=14% Similarity=0.170 Sum_probs=83.5
Q ss_pred CeEEEEECC--CceEEEEecC-------CCCCeEEEEE--eCCCCC-EEEEEeCCCeEEEEEcc---cc----eeEEEEe
Q 001534 861 GKVSLFNMM--TFKVMTMFMS-------PPPAATFLAF--HPQDNN-IIAIGMEDSSVQIYNVR---VD----EVKTKLK 921 (1058)
Q Consensus 861 g~i~iwd~~--~~~~~~~~~~-------~~~~i~~l~~--s~~~~~-~lasg~~dg~I~iwd~~---~~----~~~~~l~ 921 (1058)
++|++|.+. ++.+ ..+.. ....+..+|+ ++.+|. ++++...+|.+..|.+. .+ +.++.+.
T Consensus 127 n~l~~f~id~~~g~L-~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~ 205 (381)
T PF02333_consen 127 NSLRLFRIDPDTGEL-TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK 205 (381)
T ss_dssp -EEEEEEEETTTTEE-EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred CeEEEEEecCCCCcc-eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence 469999776 3433 33321 1234667776 343454 56667888999888875 22 4566776
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccceeeecCCCCCCCCCCeeEEEE--cCCC-cEEEEE--eCCe
Q 001534 922 GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF--HNDQ-THLLVV--HESQ 996 (1058)
Q Consensus 922 ~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f--s~d~-~~l~~~--~d~~ 996 (1058)
.- ..+..+.......+|..+-+|.-|.-|+.+.........+....+.. -..-|-.++. ..++ .||+++ .+++
T Consensus 206 ~~-sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~-l~aDvEGlaly~~~~g~gYLivSsQG~~s 283 (381)
T PF02333_consen 206 VG-SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDG-LVADVEGLALYYGSDGKGYLIVSSQGDNS 283 (381)
T ss_dssp -S-S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSS-B-S-EEEEEEEE-CCC-EEEEEEEGGGTE
T ss_pred CC-CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccc-cccCccceEEEecCCCCeEEEEEcCCCCe
Confidence 43 46888888888889999999887777777633222222332222210 0134555555 3444 466665 7889
Q ss_pred EEEEeC--CCCeeeEEee
Q 001534 997 ISVYDS--KLECSRSVSF 1012 (1058)
Q Consensus 997 i~vwd~--~~~~~~~~~~ 1012 (1058)
..||+. ....+..+..
T Consensus 284 f~Vy~r~~~~~~~g~f~i 301 (381)
T PF02333_consen 284 FAVYDREGPNAYVGSFRI 301 (381)
T ss_dssp EEEEESSTT--EEEEEEE
T ss_pred EEEEecCCCCcccceEEe
Confidence 999999 3455555543
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.39 E-value=27 Score=43.43 Aligned_cols=140 Identities=14% Similarity=0.254 Sum_probs=88.5
Q ss_pred CCCcEEEEEcCCCceeEEeeCCCCCeEEEEecccCCc------cEEEEEeCCCeEEEEeCCC----CCc-----eEEecC
Q 001534 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI------QFIFSTAIDGKIKAWLYDY----LGS-----RVDYDA 539 (1058)
Q Consensus 475 ~d~~v~vwd~~~~~~~~~l~~~~~~v~~~~~~~~~~~------~~l~s~s~d~~i~~wd~~~----~~~-----~~~~~~ 539 (1058)
.|..+.+|+.+++.....+.+-...|..+..-....| ++++.-+.--.|.++-+.- .+. .+.+..
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 4788999999998888877777777777653221121 3444444444555553321 111 123444
Q ss_pred CCCcEEEEEEcCCCCEEEEEecCCCCCceEEE--eeCCCC---c-e----------------eEeecCCCCCceeEEEEc
Q 001534 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVE--WNESEG---A-I----------------KRTYSGFRKRSLGVVQFD 597 (1058)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~--wd~~~~---~-~----------------~~~~~~~~~~~v~~~~~~ 597 (1058)
.+..|.++....+|+.+++|. ++.|+- |....| + + +..+.+....+|..++..
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~-----dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGR-----DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred CCceEEEEEeccCCcEEEeec-----CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 566889999889999998874 554442 222111 1 0 111232334488999998
Q ss_pred CCCCEEEEEeCCCeEEEEECCC
Q 001534 598 TTRNRFLAAGDEFQIKFWDMDN 619 (1058)
Q Consensus 598 ~~~~~l~~~~~dg~i~iwd~~~ 619 (1058)
...+.+++-++.|+|.+||+..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 8888999999999999999976
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=80.30 E-value=1.1e+02 Score=34.56 Aligned_cols=62 Identities=11% Similarity=0.051 Sum_probs=38.8
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccCcceeecccccccccccccccCCCcCeEEEEECCCC
Q 001534 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1058)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spd~ 420 (1058)
-...+.|+|.|||+ ++++--..|.|++++-.++.......+ +........+....|+|+|+-
T Consensus 29 L~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence 35789999999996 777654469999998665432110000 000011136678999999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=80.30 E-value=68 Score=36.14 Aligned_cols=106 Identities=19% Similarity=0.243 Sum_probs=61.0
Q ss_pred CCCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccce--eEEEE----e-CCCCCeEEEEEcCCC------CEEEEEe----
Q 001534 881 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE--VKTKL----K-GHQNRITGLAFSPTL------NALVSSG---- 943 (1058)
Q Consensus 881 ~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~--~~~~l----~-~h~~~v~~l~~spd~------~~l~s~s---- 943 (1058)
-.....|+|.| |+++|++--..|.|++++-.++. .+..+ . .-.+....|+++|+- ++|....
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 45678999999 88888765546999999865543 22111 1 135678999999884 2333331
Q ss_pred ------CCCcEEEEeCCCC--cccc-ceee-ecC--CCCCCCCCCeeEEEEcCCCcEEEEE
Q 001534 944 ------ADAQLCMWSIDKW--EKLK-SRFI-QAP--AGRQSPLVGETKVQFHNDQTHLLVV 992 (1058)
Q Consensus 944 ------~D~~i~iwd~~~~--~~~~-~~~~-~~~--~~~~~~~~~v~~~~fs~d~~~l~~~ 992 (1058)
....|.-|.+... .... ...+ ..+ ..|. -..+.|.|||++.++.
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~-----GgrI~FgPDG~LYVs~ 163 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN-----GGRLVFGPDGKIYYTI 163 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC-----CceEEECCCCcEEEEE
Confidence 1233444555421 1110 1112 121 1233 3678899999877763
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=80.26 E-value=72 Score=32.46 Aligned_cols=114 Identities=10% Similarity=0.089 Sum_probs=69.3
Q ss_pred CCCeeEEEEccCCcEEEEEe-CCeEEEEECCCceEEEEecCCC---CCeEEEEEeCCCCCEEEEEeCCCeEEEEEcccce
Q 001534 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP---PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915 (1058)
Q Consensus 840 ~~~i~~~~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~ 915 (1058)
...-+.++..|||..-++.- ++.|-..|..++. -..+.... ..-+.+--+| -++.-++-...+.+.-+|-.+..
T Consensus 188 G~gpyGi~atpdGsvwyaslagnaiaridp~~~~-aev~p~P~~~~~gsRriwsdp-ig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 188 GGGPYGICATPDGSVWYASLAGNAIARIDPFAGH-AEVVPQPNALKAGSRRIWSDP-IGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred CCCCcceEECCCCcEEEEeccccceEEcccccCC-cceecCCCcccccccccccCc-cCcEEEeccCCceeeEeCccccc
Confidence 34456789999999877765 6677777776652 22222221 2234444556 56777776667777777765443
Q ss_pred e-EEEEeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001534 916 V-KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1058)
Q Consensus 916 ~-~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~ 955 (1058)
- ...|.+....-.++.....++.-.+--..+.|.-+|-++
T Consensus 266 W~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 266 WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred ceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCccc
Confidence 2 234566666666777766666655544455666666665
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=80.24 E-value=63 Score=31.79 Aligned_cols=111 Identities=15% Similarity=0.280 Sum_probs=67.1
Q ss_pred eEEEEccCCcEEEEEeCCeEEEEECC--CceEEEEecCCCCCeEEEEEeCCCCCEEEEEeCCC------eEEEE---Ecc
Q 001534 844 ACIALSKNDSYVMSASGGKVSLFNMM--TFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS------SVQIY---NVR 912 (1058)
Q Consensus 844 ~~~~~s~d~~~la~~sdg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg------~I~iw---d~~ 912 (1058)
..++-++.+.++++++...|.+|++. ..+.+..|.. -+.|..+.++. .|.+|+|--++. .+|+| +..
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhh
Confidence 44555554445455668889999988 3556667763 47899999999 899999864432 45554 222
Q ss_pred --cceeEE-EEeCC---------------------CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001534 913 --VDEVKT-KLKGH---------------------QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 957 (1058)
Q Consensus 913 --~~~~~~-~l~~h---------------------~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~ 957 (1058)
..+++. .+-|| +.++.+++.-|-..-|+.|+ ++.+.+|.+....
T Consensus 99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence 112222 23333 23556676666433444444 4568899886533
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1058 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-08 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 5e-04 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 5e-08 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-04 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 6e-08 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-04 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 9e-08 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-04 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 1e-07 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-07 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-04 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-04 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 1e-07 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-04 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-04 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 4e-04 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-07 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-04 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 3e-07 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 3e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 4e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 4e-04 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 5e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 5e-04 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 5e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 5e-04 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 5e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 5e-04 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 5e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 5e-04 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 5e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 5e-04 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 5e-07 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 5e-04 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 5e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 5e-04 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-06 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 9e-06 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 1e-05 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 1e-05 | ||
| 3jpx_A | 402 | Eed: A Novel Histone Trimethyllysine Binder Within | 4e-05 | ||
| 3jzn_A | 366 | Structure Of Eed In Apo Form Length = 366 | 5e-05 | ||
| 3iiy_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 5e-05 | ||
| 3iiw_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 5e-05 | ||
| 2qxv_A | 361 | Structural Basis Of Ezh2 Recognition By Eed Length | 5e-05 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-04 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 7e-04 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 8e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402 | Back alignment and structure |
|
| >pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366 | Back alignment and structure |
|
| >pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1058 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.002 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.002 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.002 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.003 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 9e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.002 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.002 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-07 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 5e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.004 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 7e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.001 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 5e-06 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 9e-06 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 7e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-04 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 1e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.001 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 8e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.001 | |
| d1jofa_ | 365 | b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactoniz | 0.001 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 80.2 bits (196), Expect = 1e-16
Identities = 44/339 (12%), Positives = 100/339 (29%), Gaps = 32/339 (9%)
Query: 302 DSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQT 360
+++ L +IR + T N+ + RTL + + +M + +
Sbjct: 10 EAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRL 69
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
L+ + G + +W+ + ++ P + + + + + ++
Sbjct: 70 -LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI---------- 470
V S+ + Y +I G + Q
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188
Query: 471 -----------VTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI 519
V+ D K+WDV G + TF GHE+ + ++C + +
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG--NAFATGSD 246
Query: 520 DGKIKAWLYDYLGSRVDYDAPGNWC--TMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577
D + + + Y C T +++S G L + + + W+ +
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD----DFNCNVWDALKA 302
Query: 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616
+G R + + +K W+
Sbjct: 303 DRAGVLAGHDNRVSC-LGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.1 bits (188), Expect = 1e-15
Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 10/164 (6%)
Query: 792 SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 851
+ V L T SG A+ +LW G E I N
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASA--KLWDVREGMC----RQTFTGHESDINAICFFPN 237
Query: 852 DSYVMSASGG---KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 908
+ + S ++ + + T ++F ++ G +D + +
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNV 296
Query: 909 YNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
++ + L GH NR++ L + A+ + D+ L +W+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.6 bits (140), Expect = 1e-09
Identities = 36/283 (12%), Positives = 77/283 (27%), Gaps = 43/283 (15%)
Query: 430 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489
I + ++R + H+ + + + + +L +V+ D + +WD K
Sbjct: 32 QITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRL-LVSASQDGKLIIWDSYTTNK 89
Query: 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAY 549
+ + V + + I RV + G+ +
Sbjct: 90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 550 SADGTRLFSCGT---------------------------------------SKEGESHLV 570
+ S ++
Sbjct: 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ EG ++T++G + + + F N F D+ + +D+ L T D
Sbjct: 210 LWDVREGMCRQTFTGH-ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
+ + F+K G LL D + +L G
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAG 310
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.1 bits (131), Expect = 2e-08
Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 7/139 (5%)
Query: 866 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 925
+ T + D + G D+S ++++VR + GH++
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 926 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 985
I + F P NA + DA ++ + ++L + G T V F
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC------GITSVSFSKS 281
Query: 986 QTHLLVVHE-SQISVYDSK 1003
LL ++ +V+D+
Sbjct: 282 GRLLLAGYDDFNCNVWDAL 300
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.0 bits (123), Expect = 2e-07
Identities = 20/142 (14%), Positives = 51/142 (35%), Gaps = 12/142 (8%)
Query: 863 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI--YNVRVDEVKTKL 920
L+++ F + F P + N A G +D++ ++ + +
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSH 266
Query: 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 980
IT ++FS + L++ D +W K ++ AG + + + +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL-----AGHDNRV---SCL 318
Query: 981 QFHNDQTHLLVV-HESQISVYD 1001
+D + +S + +++
Sbjct: 319 GVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.8 bits (99), Expect = 1e-04
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQL 948
D + I V +R + L+GH +I + + LVS+ D +L
Sbjct: 23 KACADATLSQITNNIDPVGRIQMRT---RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKL 79
Query: 949 CMWSIDKWEKLKS 961
+W K+ +
Sbjct: 80 IIWDSYTTNKVHA 92
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 78.2 bits (191), Expect = 4e-16
Identities = 41/192 (21%), Positives = 70/192 (36%), Gaps = 8/192 (4%)
Query: 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH-KPFKVWDISA 394
T V+T + M Q T++ +N + +W V ++E A + +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 395 ASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG 454
+ P + A G G L + ++ + TG L H
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-TGMCLMTLV--GHDN 248
Query: 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514
V + F K I++C DDK ++VWD R T HE V S+ H ++
Sbjct: 249 WVRGVLFHSGGK--FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA--PYV 304
Query: 515 FSTAIDGKIKAW 526
+ ++D +K W
Sbjct: 305 VTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.2 bits (183), Expect = 5e-15
Identities = 37/229 (16%), Positives = 79/229 (34%), Gaps = 13/229 (5%)
Query: 436 TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495
+ P + L H V + F HP + +V+ +D IKVWD G + T +G
Sbjct: 2 EWIPRPPEKYALS--GHRSPVTRVIF-HPVFSV-MVSASEDATIKVWDYETGDFERTLKG 57
Query: 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555
H V + H + S D IK W + + + ++ +G
Sbjct: 58 HTDSVQDISFDHSGKLLASCS--ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 115
Query: 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 615
+ S K + V+ +T++G R+ +V+ + + ++ ++ W
Sbjct: 116 IVSASRDKTIKMWEVQTGY----CVKTFTGHREWV-RMVRPNQDGTLIASCSNDQTVRVW 170
Query: 616 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664
+ + + + + E S +++ + + G
Sbjct: 171 VVATKECKAELREHRHVVEC--ISWAPESSYSSISEATGSETKKSGKPG 217
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.4 bits (181), Expect = 9e-15
Identities = 55/328 (16%), Positives = 104/328 (31%), Gaps = 46/328 (14%)
Query: 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406
S V + FHP +++ + I +W+ + + L
Sbjct: 18 SPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKG 57
Query: 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466
SV + G + + + + + + PN
Sbjct: 58 HTDSVQDISFDHSGKL----LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113
Query: 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
IV+ DK IK+W+V G TF GH V V P+ I S + D ++ W
Sbjct: 114 D-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG--TLIASCSNDQTVRVW 170
Query: 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT----------------SKEGESHLV 570
+ + + + ++++ + + S + +
Sbjct: 171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G T G GV F + L+ D+ ++ WD N + T++A
Sbjct: 231 MWDVSTGMCLMTLVGHDNWVRGV-LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 289
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKI 658
S L F+K + + D +K+
Sbjct: 290 HFVTS--LDFHKTAPYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.7 bits (161), Expect = 3e-12
Identities = 17/108 (15%), Positives = 43/108 (39%), Gaps = 2/108 (1%)
Query: 845 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED 903
K +++S S + ++++ T + + + FH I +D
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADD 268
Query: 904 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951
++++++ + L H++ +T L F T +V+ D + +W
Sbjct: 269 KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.8 bits (138), Expect = 2e-09
Identities = 24/178 (13%), Positives = 61/178 (34%), Gaps = 29/178 (16%)
Query: 845 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ----------- 892
+ +++ + + S S V ++ + T + +++ P+
Sbjct: 148 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 207
Query: 893 --------DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA 944
+ G D ++++++V L GH N + G+ F ++S
Sbjct: 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 267
Query: 945 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYD 1001
D L +W +K+ + A T + FH +++ + + V++
Sbjct: 268 DKTLRVWDYKNKRCMKT--LNAHEHFV------TSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.1 bits (123), Expect = 2e-07
Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 12/173 (6%)
Query: 315 SDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLW 374
D A ++ V TK L + +V+ + + + G +
Sbjct: 153 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK 212
Query: 375 EVGSRERL----AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430
L K K+WD+S M L L V ++ G +
Sbjct: 213 SGKPGPFLLSGSRDKTIKMWDVST-GMCLMT--LVGHDNWVRGVLFHSGGKFILSCADDK 269
Query: 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483
+ ++ Y + ++AH V + F H +VT D+ +KVW+
Sbjct: 270 TLRVWDY-KNKRCMK--TLNAHEHFVTSLDF-HKTAPY-VVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.7 bits (109), Expect = 8e-06
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 917 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961
K L GH++ +T + F P + +VS+ DA + +W + + ++
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT 54
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.0 bits (89), Expect = 0.002
Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 885 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA 944
T + FHP +++ ED+++++++ + + LKGH + + ++F + L S A
Sbjct: 21 TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79
Query: 945 DAQLCMWSIDKW 956
D + +W +
Sbjct: 80 DMTIKLWDFQGF 91
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.4 bits (168), Expect = 6e-13
Identities = 41/349 (11%), Positives = 106/349 (30%), Gaps = 28/349 (8%)
Query: 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF 387
N ++ + ++L+ S V + F + L G N ++ V S L +
Sbjct: 44 NPALPREIDVELHKSLDHTSVVCCVKFSNDGE-YLATGCN-KTTQVYRV-SDGSLVARLS 100
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
+ L + + + + + PDG L ++ ++ +
Sbjct: 101 DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL- 159
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507
+ + + +V+ D+ +++WD+ G+ T +
Sbjct: 160 ----QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG 215
Query: 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-------NWCTMMAYSADGTRLFSCG 560
++I + ++D ++ W + D+ + + ++ DG + S
Sbjct: 216 DG--KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273
Query: 561 TSK-------EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIK 613
+ + ++ + K + V L+ + +
Sbjct: 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333
Query: 614 FWDMDNMNMLTTVDADGG----LPASPRLRFNKEGSLLAVTTSDNGIKI 658
FWD + N L + + + E ++ A + D +I
Sbjct: 334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.7 bits (166), Expect = 1e-12
Identities = 31/215 (14%), Positives = 62/215 (28%), Gaps = 27/215 (12%)
Query: 325 HTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH 384
V D T TL+ V ++ P + G+ + +W+ + +
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242
Query: 385 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR 444
+ + V V+ DG + V L+
Sbjct: 243 LDSENESGTGHKDS------------VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 290
Query: 445 QHLEIDAHV---------GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495
++ V +A ++ I++ D+ + WD +G +G
Sbjct: 291 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDE--YILSGSKDRGVLFWDKKSGNPLLMLQG 348
Query: 496 HEAPVYSVCPHHKESI----QFIFSTAIDGKIKAW 526
H V SV + S+ + + D K + W
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.9 bits (151), Expect = 8e-11
Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 20/130 (15%)
Query: 845 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAA------------TFLAFHP 891
+ +++ V+S S V L+N+ + +P +A
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318
Query: 892 QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLA------FSPTLNALVSSGAD 945
++ I G +D V ++ + L+GH+N + +A P N + D
Sbjct: 319 -NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377
Query: 946 AQLCMWSIDK 955
+ +W K
Sbjct: 378 CKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 2e-08
Identities = 19/143 (13%), Positives = 39/143 (27%), Gaps = 17/143 (11%)
Query: 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406
+V S+ F Q+ ++ G+ + LW + + + +
Sbjct: 255 DSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD---- 309
Query: 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA---- 462
V + + V + +G L+ H V +A A
Sbjct: 310 ---FVLSVATTQNDEYILSGSKDRGVLFWDKK-SGNPLLMLQ--GHRNSVISVAVANGSS 363
Query: 463 -HPNKQLCIVTCGDDKMIKVWDV 484
P + T D ++W
Sbjct: 364 LGPEYNV-FATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.1 bits (123), Expect = 2e-07
Identities = 33/209 (15%), Positives = 72/209 (34%), Gaps = 12/209 (5%)
Query: 807 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLF 866
+P GK A A + + E+ + + ++S SG +
Sbjct: 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189
Query: 867 NMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV-------RVDEVKTK 919
+ ++ +S T +A P D IA G D +V++++ R+D
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249
Query: 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE-- 977
GH++ + + F+ ++VS D + +W++ + +G
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309
Query: 978 --TKVQFHNDQTHLLVVHE-SQISVYDSK 1003
V + ++L + + +D K
Sbjct: 310 FVLSVATTQNDEYILSGSKDRGVLFWDKK 338
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.0 bits (115), Expect = 2e-06
Identities = 38/356 (10%), Positives = 83/356 (23%), Gaps = 46/356 (12%)
Query: 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403
++ +D Q L L+ + D+ L +L
Sbjct: 13 SKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALP--------REIDVE-----LHKSL 59
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIV--HLYTYNPTGELRQH------------LEI 449
+ + V + DG L +K + + L
Sbjct: 60 DHTSV--VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 117
Query: 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509
+ + + F P+ + D + ++ +
Sbjct: 118 PSSDLYIRSVCF-SPDGKFLATGAEDRLIRIWDIE---NRKIVMILQGHEQDIYSLDYFP 173
Query: 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569
S + S + D ++ W + T+ DG + + +
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233
Query: 570 VEWNESEGAIKRTYSGFRKRSLGV--VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627
E + V V F ++ + +K W++ N N +
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293
Query: 628 ADGGLPASP----------RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
+ + + + D G+ G L ML+G
Sbjct: 294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQG 348
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.9 bits (107), Expect = 2e-05
Identities = 22/180 (12%), Positives = 54/180 (30%), Gaps = 24/180 (13%)
Query: 845 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPP-------AATFLAFHPQDNNI 896
+ Y+ + S V +++ T ++ S + + F D
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQS 268
Query: 897 IAIGMEDSSVQIYNVRVDEVKTKLKG------------HQNRITGLAFSPTLNALVSSGA 944
+ G D SV+++N++ K+ K H++ + +A + ++S
Sbjct: 269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 328
Query: 945 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSK 1003
D + W L +Q + + + + ++ K
Sbjct: 329 DRGVLFWDKKSGNPLLM--LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.7 bits (153), Expect = 3e-11
Identities = 36/219 (16%), Positives = 64/219 (29%), Gaps = 20/219 (9%)
Query: 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499
GEL+ + H V I IV+ DD +KVW V G+ T GH
Sbjct: 3 RGELKSPKVLKGHDDHV--ITCLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559
V+S D I + D + + T+ +++ +
Sbjct: 60 VWSSQMR-------------DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH 106
Query: 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619
S + + V R ++ +F +K WD +
Sbjct: 107 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET 166
Query: 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658
L T+ + +G + + D I++
Sbjct: 167 ETCLHTLQGH----TNRVYSLQFDGIHVVSGSLDTSIRV 201
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 1e-06
Identities = 48/393 (12%), Positives = 112/393 (28%), Gaps = 62/393 (15%)
Query: 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631
W E + G + +QF NR ++ D+ +K W L T+
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVG--- 55
Query: 632 LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPL 691
G + + DN I + +++ G + + + L
Sbjct: 56 ----------HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 105
Query: 692 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWR 751
VS + TL D +G + R V R +
Sbjct: 106 H-----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK 160
Query: 752 IPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGK 811
+ D + + L+ G+ +++ + + ++W +
Sbjct: 161 VWDPETETCLHTLQ------GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE--------- 205
Query: 812 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTF 871
N I+ + + + L ++ V + V ++++ T
Sbjct: 206 -----------------TGNCIHTLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKTG 247
Query: 872 KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-----GHQNR 926
+ + P + + + N + +D +V++++++ E L G
Sbjct: 248 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307
Query: 927 ITGLAFSPTLNALVSSGAD----AQLCMWSIDK 955
+ + S T + +L + D
Sbjct: 308 VWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (115), Expect = 2e-06
Identities = 27/157 (17%), Positives = 45/157 (28%), Gaps = 15/157 (9%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
+V+ D I+VWDV G +T GH++ + + S D +K W
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN----ILVSGNADSTVKIWDIK 245
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589
P + + S +G L W+ G R
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-SDDGTVKL--WDLKTGEFIRNLVTLESG 302
Query: 590 SLGV----VQFDTTRNRFLAAGD----EFQIKFWDMD 618
G ++ T+ E ++ D D
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 9e-05
Identities = 22/171 (12%), Positives = 54/171 (31%), Gaps = 17/171 (9%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
+ DG+ + + ++ + H + + N
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL---TGHQSLTSGMEL-KDN---I 229
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW--- 526
+V+ D +K+WD+ G+ T +G +V F+ +++ DG +K W
Sbjct: 230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLK 288
Query: 527 ----LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573
+ + + ++ G + S + E+ L+ +
Sbjct: 289 TGEFIRNLV--TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 0.002
Identities = 8/69 (11%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Query: 888 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947
N I G +D+++++++ + L GH + + S+ +
Sbjct: 22 CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLK 80
Query: 948 LCMWSIDKW 956
+ +
Sbjct: 81 VWNAETGEC 89
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.3 bits (152), Expect = 5e-11
Identities = 46/278 (16%), Positives = 83/278 (29%), Gaps = 23/278 (8%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
++ W D + + + H VH+Y + + Q E+ H G V + +A + ++
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAPDSNRI- 66
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
VTCG D+ VW + + T + C + + + I ++
Sbjct: 67 -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 530 YLGSRV--------------DYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWNE 574
D N + A S D R+FS + E
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 575 SEGAIKRTYSGFRKRSLGV--VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632
S+ V V F +R + + D D + T+ ++
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL- 244
Query: 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 670
+ F E SL+A D + L
Sbjct: 245 -PLLAVTFITESSLVA-AGHDCFPVLFTYDSAAGKLSF 280
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.8 bits (148), Expect = 2e-10
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 885 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK--TKLKGHQNRITGLAFSPTLNALVSS 942
+ A++ D IAI + V IY ++ +LK H ++TG+ ++P N +V+
Sbjct: 11 SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 943 GADAQLCMWSIDKW 956
G D +W++
Sbjct: 70 GTDRNAYVWTLKGR 83
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.8 bits (91), Expect = 0.002
Identities = 12/119 (10%), Positives = 27/119 (22%), Gaps = 6/119 (5%)
Query: 845 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 904
+ S V + LF + F + D
Sbjct: 248 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS-QRGLTARERFQNLDK 306
Query: 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSP----TLNALVSSGADAQLCMWSIDKWEKL 959
H+N ++ ++ + ++G D + +W + E
Sbjct: 307 KASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.7 bits (88), Expect = 0.003
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 450 DAHVGGVNDIAFAHPNKQLC--IVTCGDDKMIKVWDV 484
H V+ I+ K C T G D + +WDV
Sbjct: 322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.1 bits (141), Expect = 1e-09
Identities = 11/80 (13%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKES 510
H ++ I + + I+ G + ++++ +G+ ++SV K
Sbjct: 280 HHTNLSAITTFYVSDN--ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335
Query: 511 IQFIFSTAIDGKIKAWLYDY 530
+ + DG+ + D+
Sbjct: 336 -TLVAAVEKDGQSFLEILDF 354
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (125), Expect = 9e-08
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 866 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-VKTKLKGHQ 924
F + + +NI+ G ++ IYN+R + V +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDA 324
Query: 925 NRITGLAFSPTLNALVSSGADAQLCMWSID 954
++I + F + + D Q + +D
Sbjct: 325 DQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.6 bits (124), Expect = 1e-07
Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 8/147 (5%)
Query: 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
Q + H+ V N ++T DDKMI+V+D + + GH+ V+++
Sbjct: 4 QRTTLRGHMTSVITCLQFEDNY---VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60
Query: 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564
H + S + D ++ W ++ + + + S++
Sbjct: 61 YAHG---GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117
Query: 565 GESHLVEWNESEGAIKRTYSGFRKRSL 591
H+ W + + + L
Sbjct: 118 NTLHV--WKLPKESSVPDHGEEHDYPL 142
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
++N + G +D +++Y+ + +L GH + L ++ LVS D + +W
Sbjct: 22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80
Query: 953 IDKW 956
I K
Sbjct: 81 IKKG 84
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.0 bits (94), Expect = 5e-04
Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 7/138 (5%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
SV C+ + + ++ +Y + L H GGV + +AH
Sbjct: 14 SVITCLQ-FEDNYVITGADDKMIRVYDSI-NKKFLLQLS--GHDGGVWALKYAHGG---I 66
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
+V+ D+ ++VWD+ G + FEGH + V + ++I++I + + D + W
Sbjct: 67 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 126
Query: 530 YLGSRVDYDAPGNWCTMM 547
S D+ ++ +
Sbjct: 127 KESSVPDHGEEHDYPLVF 144
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.8 bits (135), Expect = 4e-09
Identities = 30/216 (13%), Positives = 57/216 (26%), Gaps = 16/216 (7%)
Query: 444 RQHLE-IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502
R L+ I + + Q IV+ D IK+WD + GH V
Sbjct: 2 RHSLQRIHCRSETSKGVYCLQYDDQK-IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60
Query: 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562
+ + I + + +A + ++ S
Sbjct: 61 LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV- 119
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
W+ + V D ++A + IK W+
Sbjct: 120 ---------WDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF 170
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658
+ T++ L+ +SDN I++
Sbjct: 171 VRTLNGHK----RGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.8 bits (122), Expect = 2e-07
Identities = 27/151 (17%), Positives = 43/151 (28%), Gaps = 25/151 (16%)
Query: 385 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR 444
+ KVW+ S + ++ S + + L+ LR
Sbjct: 158 RTIKVWNTSTCEF-----VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR 212
Query: 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY---------TFEG 495
G ++ IV+ D IKVWD+VA T
Sbjct: 213 VL-------EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE 265
Query: 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
H V+ + I S++ D I W
Sbjct: 266 HSGRVFRLQFDEF----QIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 1e-05
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 14/100 (14%)
Query: 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK- 919
+ L+++ + + + DN I G D ++++++
Sbjct: 198 NTIRLWDIECGACLRVLEGHEE---LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAP 254
Query: 920 --------LKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951
L H R+ L F +VSS D + +W
Sbjct: 255 AGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (88), Expect = 0.002
Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 15/102 (14%)
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
++WDI + L D + + ++ + R
Sbjct: 201 RLWDIECGAC-----LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255
Query: 448 E------IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483
+ H G V + F + IV+ D I +WD
Sbjct: 256 GTLCLRTLVEHSGRVFRLQF-DEFQ---IVSSSHDDTILIWD 293
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 55.8 bits (132), Expect = 8e-09
Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 8/112 (7%)
Query: 441 GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAP 499
G + Q H + ++ + + + + + I WD+ G F + H
Sbjct: 2 GSIDQVRY--GHNKAITALSS-SADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATM 57
Query: 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA 551
+ + +F+ + D +K G + A
Sbjct: 58 ITGIKTTS---KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 106
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.6 bits (103), Expect = 3e-05
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 915 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961
+ GH IT L+ S L S+ A+ + W I +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 49
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.7 bits (98), Expect = 1e-04
Identities = 26/323 (8%), Positives = 73/323 (22%), Gaps = 33/323 (10%)
Query: 338 TVVRTLNQG--SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA 395
++ + G + ++ +T L G I+ W++ +
Sbjct: 3 SIDQVR-YGHNKAITALSSSADGKT-LFSADAEGHINSWDISTGISNR------------ 48
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG 455
+ A + G + V++ H+ G + A+
Sbjct: 49 ------VFPDVHATMITGIKTTSKGDLFTVSWDDHLKV---VPAGGSGVDSSKAVANKLS 99
Query: 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF 515
+ A V + + + + ++ +
Sbjct: 100 SQPLGLAVSADGDIAVAACYKHIAIYSHG---KLTEVPISYNSSCVALSNDKQFVAVGGQ 156
Query: 516 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575
+ + + + + A F T + + +
Sbjct: 157 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN-----GAFLVATDQSRKVIPYSVANN 211
Query: 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635
F + V + R + + W+M+ + + +S
Sbjct: 212 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSS 271
Query: 636 PRLRFNKEGSLLAVTTSDNGIKI 658
+ + D+ IK
Sbjct: 272 VNSVIWLNETTIVSAGQDSNIKF 294
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.5 bits (95), Expect = 3e-04
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 471
W PD + L + V ++ N + AH + + V
Sbjct: 228 ACVSWSPDNVRLATGSLDNSVIVWNMN-KPSDHPIIIKGAHAMSSVNSVIWLNETTI--V 284
Query: 472 TCGDDKMIKVWDV 484
+ G D IK W+V
Sbjct: 285 SAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 7e-04
Identities = 12/66 (18%), Positives = 18/66 (27%), Gaps = 4/66 (6%)
Query: 463 HPNKQLCIVTCGDDKMIKVWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID 520
+ + T D + VW++ H + E I S D
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE--TTIVSAGQD 289
Query: 521 GKIKAW 526
IK W
Sbjct: 290 SNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.4 bits (92), Expect = 9e-04
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 2/93 (2%)
Query: 863 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR--VDEVKTKL 920
T + A DN +A G D+SV ++N+ D
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264
Query: 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953
H +VS+G D+ + W++
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (132), Expect = 1e-08
Identities = 6/109 (5%), Positives = 23/109 (21%), Gaps = 2/109 (1%)
Query: 845 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 904
+ ++ + L F +D+
Sbjct: 229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDN 287
Query: 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953
+ + + + + S +V+ D + ++ +
Sbjct: 288 LLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (128), Expect = 5e-08
Identities = 35/321 (10%), Positives = 81/321 (25%), Gaps = 35/321 (10%)
Query: 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM-- 397
+ TLN G V ++ + + G + + KVWDIS
Sbjct: 45 INTLNHGEVVCAVTISNPTRHVY-------------TGGKGCV-----KVWDISHPGNKS 86
Query: 398 PLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVN 457
P+ + + C PDG L V + ++ + +
Sbjct: 87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYA 146
Query: 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517
+ G+ + + + + + C +++
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLH-----NQTLVRQFQGHTDGASCIDISNDGTKLWTG 201
Query: 518 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577
+D +++W +D + Y G L S E V +
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260
Query: 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637
++F F++ G + + W + + +
Sbjct: 261 LHLHESCVLS------LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLS--- 311
Query: 638 LRFNKEGSLLAVTTSDNGIKI 658
+ + + + D +
Sbjct: 312 CDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 1e-07
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 9/117 (7%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
+ + P G L V V + N ++ H V + FA+ K
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNK----PDKYQLHLHESCVLSLKFAYCGKWF- 280
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
V+ G D ++ W G + + V S + ++I + + D K +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD--KYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (110), Expect = 7e-06
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC 473
+ G ++++ + P G + V + + IVT
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRT-PYGASIFQSK---ESSSVLSCDI-SVDDKY-IVTG 324
Query: 474 GDDKMIKVWDVV 485
DK V++V+
Sbjct: 325 SGDKKATVYEVI 336
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 1e-05
Identities = 21/137 (15%), Positives = 36/137 (26%), Gaps = 11/137 (8%)
Query: 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477
DG M V F + L H V + ++P + + T G
Sbjct: 19 ADGQMQPVPFPPDALIGPGIPRHARQINTLN---HGEVVCAVTISNPTRHV--YTGGKGC 73
Query: 478 MIKVWDVVAGR-----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG 532
+KVWD+ Q + + S + A I
Sbjct: 74 -VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR 132
Query: 533 SRVDYDAPGNWCTMMAY 549
+ + + C +A
Sbjct: 133 IKAELTSSAPACYALAI 149
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 6e-05
Identities = 22/158 (13%), Positives = 47/158 (29%), Gaps = 12/158 (7%)
Query: 845 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 904
CI +S + + + + + L + P + +S
Sbjct: 188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA--VGMES 245
Query: 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI 964
S K +L H++ + L F+ VS+G D L W +
Sbjct: 246 SNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ--- 302
Query: 965 QAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYD 1001
+ S + D +++ + + +VY+
Sbjct: 303 ---SKESSSV---LSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 2e-08
Identities = 34/244 (13%), Positives = 70/244 (28%), Gaps = 9/244 (3%)
Query: 445 QHLEI-DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE---GHEAPV 500
Q ++I A ++DI P+K L ++ D + V+ K ++ P+
Sbjct: 2 QIVQIEQAPKDYISDIKI-IPSKSL-LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59
Query: 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560
+Q T +K L + + N +L +
Sbjct: 60 LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119
Query: 561 TSKEGESHLVEWNESEGAIKRTYSG-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619
E + + K + DT +R + + Q++++ +
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179
Query: 620 MNMLTTVDADGGLPASPRLR--FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMD 677
+ GL R KE A ++ D + + D + A
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239
Query: 678 KNRC 681
+R
Sbjct: 240 CHRL 243
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.9 bits (130), Expect = 2e-08
Identities = 26/325 (8%), Positives = 75/325 (23%), Gaps = 35/325 (10%)
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
+ + P + +L + S + V+ + +
Sbjct: 14 ISDIKIIPSKSLLL-------------ITSWDGSL----TVYKFDIQAKNVDLLQSLRYK 56
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+ C + + + + L Q L + G+ I +K +
Sbjct: 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLI 116
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527
G ++I + G + V + + + + +++ +
Sbjct: 117 AASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFR 176
Query: 528 YDYLGSRVDYDAPGNWCTMM----AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583
+ + + + + +
Sbjct: 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 584 SGFRKRSLGV----------VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633
+ R ++F AG + I W++ +
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA---KFN 293
Query: 634 ASPRLRFNKEGSLLAVTTSDNGIKI 658
++ ++L + TSD+ K
Sbjct: 294 EDSVVKIACSDNILCLATSDDTFKT 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 19/129 (14%)
Query: 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL------------RQHLEIDAHVGGVND 458
+ + + + V + ++ G+ R +L+ VN
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256
Query: 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFST 517
I F+ +K L G D +I W++ +K F +E V + +
Sbjct: 257 IEFSPRHKFLYT--AGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN----ILCLA 310
Query: 518 AIDGKIKAW 526
D K
Sbjct: 311 TSDDTFKTN 319
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.2 bits (105), Expect = 2e-05
Identities = 8/73 (10%), Positives = 22/73 (30%), Gaps = 4/73 (5%)
Query: 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK---GHQNRITGLAFSPTLNALVSSG 943
+ P +++ I D S+ +Y + L +++ + F + + G
Sbjct: 17 IKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75
Query: 944 ADAQLCMWSIDKW 956
+
Sbjct: 76 TVQGEILKVDLIG 88
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 23/265 (8%), Positives = 59/265 (22%), Gaps = 16/265 (6%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
++ P +L + + +Y ++ + L+ + + F
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
V +++KV + + Q + + S ++
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT---YSGF 586
G + N + S S + + SG
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR--------- 637
+ + V + + + + ++ D+
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 638 ----LRFNKEGSLLAVTTSDNGIKI 658
+ F+ L SD I
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISC 277
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.0 bits (94), Expect = 5e-04
Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETK 979
+ ++ I+ + P+ + L+ + D L ++ D K + + PL
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD--LLQSLRYKHPL---LC 61
Query: 980 VQFHNDQTHLLV 991
F ++ +
Sbjct: 62 CNFIDNTDLQIY 73
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.4 bits (90), Expect = 0.002
Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 15/112 (13%)
Query: 865 LFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV------------- 911
L +A P++ A D V +
Sbjct: 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 912 --RVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961
R + K + + FSP L ++G+D + W++ +K+K+
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.2 bits (128), Expect = 3e-08
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 866 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQ 924
+S PA + +++A G D+++ IY+V+ ++ L H+
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258
Query: 925 NRITGLAFSPTLNALVSSGADAQLCMWSI 953
+ + L + + LVSSGADA + W++
Sbjct: 259 DGVNNLLWETP-STLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (112), Expect = 2e-06
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC 473
+ ++ + +Y+ ++ + L AH GVN++ + P+ +V+
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST---LVSS 275
Query: 474 GDDKMIKVWDVV 485
G D IK W+VV
Sbjct: 276 GADACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.3 bits (110), Expect = 5e-06
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 469 CIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+ T D I ++ V K H+ V ++ + + S+ D IK W
Sbjct: 229 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST---LVSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.2 bits (102), Expect = 5e-05
Identities = 10/82 (12%), Positives = 24/82 (29%), Gaps = 11/82 (13%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G+ + +P +++ D I W + + H + S+
Sbjct: 9 ISGHNKGITALTV-NP-----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA 57
Query: 509 ESIQFIFSTAIDGKIKAWLYDY 530
+ I +++
Sbjct: 58 QEYSSISWDDTLKVNGITKHEF 79
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.5 bits (95), Expect = 3e-04
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA 966
DEV + GH IT L +P L+S D ++ WS + S I +
Sbjct: 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVS 51
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 53.0 bits (126), Expect = 1e-07
Identities = 43/331 (12%), Positives = 84/331 (25%), Gaps = 44/331 (13%)
Query: 281 VGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVV 340
V +K + ++ + + AG P D T
Sbjct: 98 VAEIKIGIEARSVESSKFKGYEDRYT-------------IAGAYWPPQFAIMDGETLEPK 144
Query: 341 RTLNQ-GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 399
+ ++ G V + +HP+ + ++ ++ + V KV ++ +
Sbjct: 145 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG-------KVLLVNYKDIDN 197
Query: 400 QNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDI 459
AA + W A + + L +++
Sbjct: 198 LTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 257
Query: 460 AFAHPNKQLCIVTCGDDK--------MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES- 510
F HP T K A +K +G + H K S
Sbjct: 258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH 317
Query: 511 IQFIFSTAIDGKIKAWLYDY-------------LGSRVDYDAPGNWCTMMAYSADGTRL- 556
+ + D +I + + + D Y+ G +
Sbjct: 318 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW 377
Query: 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587
FS K S LV ++ +K R
Sbjct: 378 FSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 408
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.5 bits (96), Expect = 5e-04
Identities = 9/108 (8%), Positives = 23/108 (21%), Gaps = 8/108 (7%)
Query: 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517
L VT D I + D + + + A + +++
Sbjct: 23 KQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASG--RYLLVI 79
Query: 518 AIDGKIKAWLYDYLGSRVDYD-----APGNWCTMMAYSADGTRLFSCG 560
D +I + + + + +
Sbjct: 80 GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA 127
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.4 bits (88), Expect = 0.004
Identities = 11/101 (10%), Positives = 29/101 (28%), Gaps = 4/101 (3%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
N + + + + ++ + + S + L+ G DA++ M
Sbjct: 31 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMID 89
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 993
+ E K I+ E+ + + +
Sbjct: 90 LWAKEPTKVAEIKIGIE---ARSVESSKFKGYEDRYTIAGA 127
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.5 bits (124), Expect = 2e-07
Identities = 26/171 (15%), Positives = 54/171 (31%), Gaps = 4/171 (2%)
Query: 334 DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDIS 393
+L TV + S+D + ++ G N G + + E+ + L + + I+
Sbjct: 172 ELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMIN 229
Query: 394 AASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV 453
++ ++ G + PT + L AH
Sbjct: 230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 289
Query: 454 GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
V ++F + + + G D ++ WDV + T H +
Sbjct: 290 SWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE 338
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 22/302 (7%), Positives = 71/302 (23%), Gaps = 43/302 (14%)
Query: 434 LYTYNPTGELRQHLEIDAHVGGVNDIAF-----AHPNKQLCIVTCGDDKMIKVWDVVAGR 488
+ + H G++ + + + T + + +
Sbjct: 41 NKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRED 100
Query: 489 KQYTFEGHEAPVYSVCPHHKE-------------SIQFIFSTAIDGKIKAW--------- 526
+ + + + +T + G W
Sbjct: 101 ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 160
Query: 527 ---------LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK----EGESHLVEWN 573
+ G+ P + T + S G + + + S L
Sbjct: 161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY 219
Query: 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633
E + RS+ + + I ++ + + ++
Sbjct: 220 NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS 279
Query: 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG--VRLLRMLEGRAMDKNRCPSEPISSKPL 691
+ F +++++ +D+G + + +R + + + I +
Sbjct: 280 QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED 339
Query: 692 TI 693
+
Sbjct: 340 IL 341
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 9e-05
Identities = 37/374 (9%), Positives = 99/374 (26%), Gaps = 33/374 (8%)
Query: 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651
+ + ++ + +K WD ++ D + + L A+
Sbjct: 16 DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAIER 74
Query: 652 SDNGIKILA--NSDG-VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708
+ ++A + G + R+ K + + + S +
Sbjct: 75 DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD-----SDMKKHSFWALKWGA 129
Query: 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPD 768
+ +R + G+ + A++ + + P + +++ P
Sbjct: 130 SNDRLLSHRLVA-----TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184
Query: 769 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL 828
A S + + GL +A+ + + + + S
Sbjct: 185 QFATS----VDISERGL----IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 236
Query: 829 MTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLA 888
+ S + + + + L+
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296
Query: 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRI----TGLAFSPTLNALVSSGA 944
F+ + D ++ ++V+ E T L H + I LA ++L G
Sbjct: 297 FNDS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG- 354
Query: 945 DAQLCMWSIDKWEK 958
++ + +K
Sbjct: 355 -----VFDVKFLKK 363
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.9 bits (117), Expect = 7e-07
Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 2/89 (2%)
Query: 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG 943
A L P + I +SV V H ++ T SP+ S
Sbjct: 20 AVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 944 ADAQLCMWSIDKWEKLKSRFIQAPAGRQS 972
+ +W + + I +G
Sbjct: 78 VHGNVRIWDTTQTTHILKTTIPVFSGPVK 106
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.0 bits (112), Expect = 3e-06
Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 8/118 (6%)
Query: 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 471
G G + + + TG + G P+ I
Sbjct: 196 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-IA 254
Query: 472 TCGDDKMIKVWDVVAGRKQYTFEGH---EAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+ DK IK+W+V + + T E + Q + S + +G I
Sbjct: 255 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.9 bits (104), Expect = 3e-05
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 867 NMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN- 925
F+ ++ + F D IA D +++I+NV +V+ +
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 926 RITGLAFSPTLNALVSSGADAQLCMWSID 954
L T ALVS A+ + + +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.5 bits (103), Expect = 4e-05
Identities = 31/297 (10%), Positives = 74/297 (24%), Gaps = 20/297 (6%)
Query: 323 VAHTPNVYSQDDLTKTVVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRER 381
+ +VY+ + T + S+ P G G++ +W+
Sbjct: 34 YCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTH 92
Query: 382 LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441
+ V+ + + F + +
Sbjct: 93 ILKTTIPVFSGPVKDISWDS-----------ESKRIAAVGEGRERFGHVFLFDTGTSNGN 141
Query: 442 ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501
Q +++ + V + K ++ P
Sbjct: 142 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 201
Query: 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561
S+ + +DG D + A + +S DGT++ S
Sbjct: 202 SLFASTGGDGTIVLYNGVDGTKTGVFEDD---SLKNVAHSGSVFGLTWSPDGTKIASASA 258
Query: 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618
K + WN + +++T + + T+ ++ I F + +
Sbjct: 259 DK----TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.6 bits (114), Expect = 2e-06
Identities = 31/333 (9%), Positives = 77/333 (23%), Gaps = 27/333 (8%)
Query: 320 FAGVAHTPNVYSQDDLTKTVVRTL---NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEV 376
A + D V + + + G M P + + ++
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 377 GSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN-RCVWGPDGLMLGVAFSKHIVHLY 435
+ E L + S+ AA+S + + + + + +
Sbjct: 64 VTGETLGRIDLSTPEERVKSL-------FGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116
Query: 436 TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL-------CIVTCGDDKMIKVWDVVAGR 488
E + + +A+A +L ++ +++ + +
Sbjct: 117 VALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE 176
Query: 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548
+ + V++ ++ D G D M
Sbjct: 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT-MDLETGEMAMRE 235
Query: 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV------VQFDTTRNR 602
FS + + + + + V T +
Sbjct: 236 VRIMDVFYFSTAVNPAK--TRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGST 293
Query: 603 FLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635
G + +D + + VD G S
Sbjct: 294 VWLGGALGDLAAYDAETLEKKGQVDLPGNASMS 326
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.9 bits (112), Expect = 3e-06
Identities = 23/331 (6%), Positives = 78/331 (23%), Gaps = 40/331 (12%)
Query: 334 DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGD-ISLWEVGSRERLAHKPFKVWDI 392
D++ T V + + + + + + GT GD + +++ + + +
Sbjct: 30 DVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF 89
Query: 393 SAAS-----------MPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441
+ + ++ + ++ S + + P
Sbjct: 90 AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK 149
Query: 442 ELRQHLEIDAHVGGVN---------------DIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486
+ + + D A A + + D V
Sbjct: 150 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209
Query: 487 GR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK-IKAWLYDYLGSRVDYD 538
K + + ++ ++ +
Sbjct: 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 269
Query: 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598
P ++ + + L++++ + + ++
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTD-----LRLSA 324
Query: 599 TRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629
R + D+ +I + ++ TV+ D
Sbjct: 325 DRKTVMVRKDDGKIYTFPLEKPEDERTVETD 355
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 44.9 bits (104), Expect = 4e-05
Identities = 20/165 (12%), Positives = 43/165 (26%), Gaps = 12/165 (7%)
Query: 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA 395
+ + S + P + V E G +
Sbjct: 207 RVVLNFSFEVVSKPFVIPLIPGSPNPTKL---VPRSMTSEAGEYDLNDMYKRSSPINVDP 263
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG 455
L + + + V G A K ++ Y T ++ +
Sbjct: 264 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK-TRKVTEV------KNN 316
Query: 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500
+ D+ + K + + DD I + + + T E + P+
Sbjct: 317 LTDLRLSADRKTV--MVRKDDGKIYTFPLEKPEDERTVETDKRPL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 44.1 bits (102), Expect = 6e-05
Identities = 36/364 (9%), Positives = 90/364 (24%), Gaps = 32/364 (8%)
Query: 602 RFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI-LA 660
+A Q D+ +L + R + + + + G + +
Sbjct: 16 DLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVR--RGGDTKVAFIHGTREGDFLGIY 71
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
+ + + E + + + PT+ R
Sbjct: 72 DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 131
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV---R 777
+ D +++ + D+ A A +
Sbjct: 132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK 191
Query: 778 LIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESK 837
+Y S SL V ++ + P P S T + + +
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251
Query: 838 PTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII 897
+ S+ + ++++ S +
Sbjct: 252 MYKRSSPIN-------------------VDPGDYRMIIPLESSILIYSVPVHGE-FAAYY 291
Query: 898 AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 957
E + Y+V+ K+ +N +T L S ++ D ++ + ++K E
Sbjct: 292 QGAPEKGVLLKYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE 347
Query: 958 KLKS 961
++
Sbjct: 348 DERT 351
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.8 bits (91), Expect = 0.001
Identities = 33/349 (9%), Positives = 78/349 (22%), Gaps = 34/349 (9%)
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492
+ + +G + + + K I + + ++D K
Sbjct: 25 QAFIQDVSGTYVLKV---PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYD-YRTGKAEK 80
Query: 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN----WCTMMA 548
FE + V+++ + + +
Sbjct: 81 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR 140
Query: 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608
+ A G L T + ++ I + FD
Sbjct: 141 FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTEN--SHDYAPAFDADSKNLYYLSY 198
Query: 609 EFQIKFWDMDNMNMLTTV-----------DADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657
D +N V + PR ++ G
Sbjct: 199 RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSP 258
Query: 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGP 717
I + R++ LE + + ++ G +
Sbjct: 259 INVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK-TRKVTEVKNNL 317
Query: 718 PAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766
+ +S+ D ++ V +D KI ++ + P + +
Sbjct: 318 TDLRLSA----DRKTVM-----VRKDDGKIYTF---PLEKPEDERTVET 354
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (111), Expect = 4e-06
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 3/119 (2%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
S R V V + ++ D I
Sbjct: 206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 265
Query: 470 IVTCGDDKMIKVWDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
T G D I+VWDV + +++T + + V + I S ++DG + +
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 23/253 (9%), Positives = 59/253 (23%), Gaps = 10/253 (3%)
Query: 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG-VNDIAFAHPNKQLCIVTCG 474
+ P + K + ++ ++ H V + F+ + +
Sbjct: 25 YDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD 84
Query: 475 DDKMIKVWDVVAGRKQYTF--------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+ + VW ++ + + P+ + + + D
Sbjct: 85 ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFI 144
Query: 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586
+D S + A RT+
Sbjct: 145 SWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ 204
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR-FNKEGS 645
V + + G + +I +D + L ++ D +
Sbjct: 205 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ 264
Query: 646 LLAVTTSDNGIKI 658
A +D I++
Sbjct: 265 KFATVGADATIRV 277
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.4 bits (100), Expect = 1e-04
Identities = 8/101 (7%), Positives = 26/101 (25%), Gaps = 2/101 (1%)
Query: 384 HKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL 443
+ +D + + + D + + ++ T +
Sbjct: 227 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT-TSKC 285
Query: 444 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484
Q +D G + I++ D + +++
Sbjct: 286 VQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.1 bits (94), Expect = 5e-04
Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 5/110 (4%)
Query: 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK--TKLKGHQ-NRITGLAFSPTLNA-- 938
T L++ P N I + + V+ + +V + GH + +T + FSP +
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79
Query: 939 LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 988
L S ++ +W ++ S + + Q + + + +
Sbjct: 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR 129
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 47.6 bits (111), Expect = 5e-06
Identities = 36/300 (12%), Positives = 82/300 (27%), Gaps = 33/300 (11%)
Query: 319 SFAGVAHTPN--VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEV 376
+FA +A++ + + D + V T+ GSN M P + + + D+S+ +
Sbjct: 2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDT 61
Query: 377 GSRERLAHKPF----------------------KVWDISAASMPLQNALLNDAAISVNRC 414
+ +A P + A S
Sbjct: 62 ATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGL 121
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
PDG L V + T + + + G+ +
Sbjct: 122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMS 181
Query: 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534
+ V + V EA + + + + ++ + + +
Sbjct: 182 ISVIDTVTNSV-----IDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236
Query: 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-GFRKRSLGV 593
G +A + DG +++ + + + + + I T + G + G
Sbjct: 237 TARIPVGPDPAGIAVTPDGKKVY---VALSFCNTVSVIDTATNTITATMAVGKNPYASGQ 293
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 46.7 bits (109), Expect = 9e-06
Identities = 17/116 (14%), Positives = 33/116 (28%), Gaps = 11/116 (9%)
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491
+H++ N G L ++ G V + P+K+ V + + + +
Sbjct: 16 IHVWNLNHEGALTL-TQVVDVPGQVQPMVV-SPDKRYLYVGVRPEFRVLAYRIAPDDGAL 73
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547
TF A S+ ST G+ G+ +
Sbjct: 74 TFAAESALPGSLTH---------ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 120
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 40.6 bits (93), Expect = 7e-04
Identities = 30/299 (10%), Positives = 70/299 (23%), Gaps = 46/299 (15%)
Query: 329 VYSQDDLTK-TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF 387
V++ + T+ + ++ V M P ++ + + + + + +
Sbjct: 18 VWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA 77
Query: 388 KVW--------DISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVH------ 433
+ + N +SV R G ++ V H
Sbjct: 78 ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP 137
Query: 434 ----------------LYTYNPTGE--LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475
L+T + G + E+ G HPN+Q
Sbjct: 138 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL 197
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY----- 530
+ + VW++ + + + +
Sbjct: 198 NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVF 257
Query: 531 -------LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582
+ S+ + G L + G K + E +G +
Sbjct: 258 SVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG-QKSHHISVYEIVGEQGLLHEK 315
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.3 bits (108), Expect = 1e-05
Identities = 25/281 (8%), Positives = 60/281 (21%), Gaps = 23/281 (8%)
Query: 216 PTNNPLVGPIPKAGQFPPIGAHGPFQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFV 275
P I + P+ ++P + + S +P++ + +
Sbjct: 85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM 144
Query: 276 QPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDL 335
+ T D G +
Sbjct: 145 LDVPDCYHIFPTAPDTFFMH----CRDGSLAKVAF--------GTEGTPEITHTEVFHPE 192
Query: 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA 395
+ ++ + + I + + GD + + +
Sbjct: 193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPA-------VEALTEAERADG 245
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG 455
P + + + V + TGE E
Sbjct: 246 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA-KTGERLAKFE---MGHE 301
Query: 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496
++ I + K L DK + + D +G + +
Sbjct: 302 IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 342
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 41/318 (12%), Positives = 78/318 (24%), Gaps = 44/318 (13%)
Query: 301 ADSDHLMKRIRTGQSDEVSFA------GVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 354
++ ++ I G A A T V + + + + D
Sbjct: 35 GEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADI 94
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLA----HKPFKVWDISAASMPLQNALLNDAAI- 409
LVGT SL G V D+ + + + I
Sbjct: 95 ELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF 154
Query: 410 ---SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466
+ DG + VAF T+ +N A++
Sbjct: 155 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL-------INHPAYSQKAG 207
Query: 467 QLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFS-------- 516
+L T I D+ +G ++ E + Q +
Sbjct: 208 RLVWPT--YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265
Query: 517 --------TAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567
+ D G R+ G+ + S D L ++ +
Sbjct: 266 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTL 325
Query: 568 HLVEWNESEGAIKRTYSG 585
++ + G R+ +
Sbjct: 326 YI--HDAESGEELRSVNQ 341
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 43.4 bits (102), Expect = 1e-04
Identities = 24/176 (13%), Positives = 50/176 (28%), Gaps = 20/176 (11%)
Query: 829 MTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLA 888
+ + A K ++ + + T ++ P L
Sbjct: 206 TMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEF-TRYIPVPKNPHGLN 264
Query: 889 FHPQDNNIIAIGMEDSSVQIYNV-RVDEVKTKLKGHQNRITG----------LAFSPTLN 937
P IA G +V + + ++D++ ++ I F N
Sbjct: 265 TSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN 324
Query: 938 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 993
A + D+Q+C W+I I+ G + + + K+ H
Sbjct: 325 AYTTLFIDSQVCKWNIADA-------IKHYNGDRVNYIRQ-KLDVQYQPGHNHASL 372
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 42.8 bits (99), Expect = 1e-04
Identities = 23/237 (9%), Positives = 52/237 (21%), Gaps = 28/237 (11%)
Query: 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405
G ++ S P + + N +V+ +
Sbjct: 88 GRSMYSFAISPDGKE-VYATVNPTQRLNDHYVV----KPPRLEVFSTADGLEAKPVRTFP 142
Query: 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI---------------- 449
V DG + + + + T T L
Sbjct: 143 MPR-QVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 201
Query: 450 -DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEAPVYSVCPHH 507
H + + + T D+ G+ F ++
Sbjct: 202 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP 261
Query: 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564
K+ Q ++ + + + +A+ G +L+ GT +
Sbjct: 262 KDPNQIYGV---LNRLAKYDLKQ-RKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND 314
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 40.9 bits (94), Expect = 5e-04
Identities = 19/217 (8%), Positives = 51/217 (23%), Gaps = 2/217 (0%)
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
+ +P ++ + + +
Sbjct: 127 FSTADGLEAKPVRTFPM-PRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWN 185
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
+ S S A Q + L + TG +
Sbjct: 186 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ 245
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
+D +S + + D + +++ N + F +
Sbjct: 246 EFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDK 305
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM 397
L +G D++++ + E++ + D+S +
Sbjct: 306 -LYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTP 341
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 40.1 bits (92), Expect = 0.001
Identities = 17/172 (9%), Positives = 40/172 (23%), Gaps = 14/172 (8%)
Query: 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRER-------LAHKPFK 388
T L + P + + S+ +R + A +
Sbjct: 172 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 231
Query: 389 VWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLE 448
+ + D + P + + + Y +L +
Sbjct: 232 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ-IYGVLNRLAKYDLK-QRKLIKAAN 289
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500
+D +AF +L G + V++ K + +
Sbjct: 290 LD---HTYYCVAFDKKGDKL--YLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 39.0 bits (89), Expect = 0.003
Identities = 10/127 (7%), Positives = 30/127 (23%), Gaps = 5/127 (3%)
Query: 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-GHQNRITGLAFSPTLN-ALVSSGA 944
A + + + +++ + +V D V + +P A V +
Sbjct: 2 PALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60
Query: 945 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKL 1004
+ +D + + + D + + D +
Sbjct: 61 YGDIYGIDLDTCK--NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118
Query: 1005 ECSRSVS 1011
+
Sbjct: 119 VKPPRLE 125
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 42.1 bits (98), Expect = 3e-04
Identities = 27/203 (13%), Positives = 63/203 (31%), Gaps = 31/203 (15%)
Query: 811 KATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMT 870
+ + V P+ + D+ +N V G+++L + T
Sbjct: 8 RESWKVHVAPEDRPTQQMNDWDL----------------ENLFSVTLRDAGQIALIDGST 51
Query: 871 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV------RVDEVKTKLKGHQ 924
+++ T+ + A + + D V + ++ V E+K +
Sbjct: 52 YEIKTVLDT-GYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEAR 108
Query: 925 NRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF- 982
+ T A+ + Q + + E K + + + E +V
Sbjct: 109 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI 168
Query: 983 ---HNDQTHLLVVHES-QISVYD 1001
H ++ V E+ +I + D
Sbjct: 169 LASHYRPEFIVNVKETGKILLVD 191
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.5 bits (94), Expect = 8e-04
Identities = 22/195 (11%), Positives = 46/195 (23%), Gaps = 15/195 (7%)
Query: 442 ELRQHLEIDAHVGGV-NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500
E+R+ ++ + L VT D I + D + + A
Sbjct: 6 EMRESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV- 64
Query: 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMAYSADGTR 555
+ +++F DGK+ + T +
Sbjct: 65 HISRLSASG--RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY 122
Query: 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA---GDEFQI 612
+ V + K+ S R + A EF +
Sbjct: 123 AIAGA---YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179
Query: 613 KFWDMDNMNMLTTVD 627
+ + ++ D
Sbjct: 180 NVKETGKILLVDYTD 194
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.3 bits (93), Expect = 0.001
Identities = 7/61 (11%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498
G+ + + + I A +++ ++D + + Q + E +
Sbjct: 302 SVGQTSGPIS---NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358
Query: 499 P 499
P
Sbjct: 359 P 359
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Length = 365 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Score = 40.2 bits (93), Expect = 0.001
Identities = 32/316 (10%), Positives = 79/316 (25%), Gaps = 38/316 (12%)
Query: 333 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH-KPFKVWD 391
+ G + + D + I L+ +++ + + F V +
Sbjct: 69 SPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSE 128
Query: 392 ISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV-AFSKHIVHLYTYNPTGELRQHLEID 450
+QN + ++ V+ P L + + + + +GE+ +D
Sbjct: 129 TGKLEKNVQNYEYQENT-GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD 187
Query: 451 AHVGGVNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509
A G + A HP I + + + H P+
Sbjct: 188 APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL--------- 238
Query: 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT---SKEGE 566
+ + A + G +F+ +
Sbjct: 239 ----------------IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQG 282
Query: 567 SHLVEWNESEGAIKRTYSGFRKRSLGV----VQFDTTRNRFLAAGDEF--QIKFWDMDNM 620
G+I++ + G V + ++A D+ ++ + +
Sbjct: 283 YIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342
Query: 621 NMLTTVDADGGLPASP 636
+ P
Sbjct: 343 FLHRVARVRIPEPGFG 358
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1058 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.98 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.98 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.98 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.98 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.95 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.94 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.94 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.93 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.93 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.93 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.92 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.92 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.88 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.88 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.87 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.86 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.82 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.76 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.74 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.74 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.69 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.62 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.58 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.53 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.45 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.45 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.42 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.41 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.3 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.22 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.21 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.15 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.11 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.04 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.03 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.93 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.79 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.75 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.65 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.29 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.27 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.13 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.93 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.9 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.86 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.68 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.56 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.5 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.5 | |
| d2nxpa1 | 149 | TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId | 97.42 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.41 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.29 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.14 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.76 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.76 | |
| d2j4ba1 | 131 | TAF5 subunit of TFIID {Encephalitozoon cuniculi [T | 96.76 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.73 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.64 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.63 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.42 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.28 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.28 | |
| d2j49a1 | 134 | TAF5 subunit of TFIID {Saccharomyces cerevisiae [T | 96.15 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.13 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.1 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.93 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 94.0 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 87.35 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 86.46 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-40 Score=286.79 Aligned_cols=295 Identities=13% Similarity=0.200 Sum_probs=252.5
Q ss_pred CCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 40256860289973699981599729999927882999983676533457512101333453210101367886738999
Q 001534 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1058)
Q Consensus 336 ~~~~~~~~~h~~~V~~~~fspdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~ 415 (1058)
..+.+.++.|...|+|++|||+|+ +|++|+ ||.|+|||+.++..... .......+|.+.|.+++
T Consensus 41 ~~~~~~~~~H~~~V~~v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~ 104 (337)
T d1gxra_ 41 HARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCK 104 (337)
T ss_dssp EEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEE
T ss_pred CCEEEEECCCCCCEEEEEECCCCC-EEEEEE-CCEEEEEECCCCCCCCE--------------EEEEEECCCCCCEEEEE
T ss_conf 754999879999289999989999-999997-99889977367763311--------------68764048899689999
Q ss_pred ECCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEC
Q ss_conf 88999989999699959999805998200014530576786789994499936999982899399998578814687408
Q 001534 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1058)
Q Consensus 416 ~spd~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~ 495 (1058)
|+||+++|++++.|+.|++||+..... .....+..|...+.++.|+|++. ++++++.|+.+++|++.++++.....+
T Consensus 105 ~s~dg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~ 181 (337)
T d1gxra_ 105 LLPDGCTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQG 181 (337)
T ss_dssp ECTTSSEEEEEESSSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred ECCCCCEEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 867998898861233211111111111-11111111111111111111111--111111111111111111111111111
Q ss_pred CCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECC
Q ss_conf 88985799730468932999990799099996788981479508999479999868999799970287898609996479
Q 001534 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1058)
Q Consensus 496 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~ 575 (1058)
|...+.+++|++. +..+++++.|+.+++||+++++....+. +...+.+++|+|+++++++++. ++.+++||++
T Consensus 182 ~~~~v~~l~~s~~--~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~ 254 (337)
T d1gxra_ 182 HTDGASCIDISND--GTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVN 254 (337)
T ss_dssp CSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET----TSCEEEEETT
T ss_pred CCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCEEEEEECCCCCCCCEECC----CCCCCCCCCC
T ss_conf 1111110123444--3211223566553211111100000246-6661579997153030000002----5642111111
Q ss_pred CCCEEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCC
Q ss_conf 88146764177887636999858999999983899099997899914899916899998146999079999999978993
Q 001534 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1058)
Q Consensus 576 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1058)
++... ....|.. .+.+++|+|+++++++++.||.|++||..+++.+..+... ..|.+++|+|++++|++++.||.
T Consensus 255 ~~~~~-~~~~~~~-~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~t~s~D~~ 329 (337)
T d1gxra_ 255 KPDKY-QLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp SSCEE-EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTSC
T ss_pred CCCCC-CCCCCCC-CCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCCC---CCEEEEEEECCCCEEEEEECCCE
T ss_conf 11100-0012456-5416999899999999948996999989999799992699---98799999279999999908996
Q ss_pred EEEEEC
Q ss_conf 999997
Q 001534 656 IKILAN 661 (1058)
Q Consensus 656 i~iw~~ 661 (1058)
|++|++
T Consensus 330 I~vWdl 335 (337)
T d1gxra_ 330 ATVYEV 335 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 999977
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9e-39 Score=275.00 Aligned_cols=320 Identities=15% Similarity=0.288 Sum_probs=152.3
Q ss_pred CCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCC
Q ss_conf 57678678999449993699998289939999857881468740888985799730468932999990799099996788
Q 001534 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (1058)
Q Consensus 451 ~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~ 530 (1058)
+|.+.|++++|+|||+ +|++|+ |+.|++||+.+++.+..+..+......... +
T Consensus 60 ~H~~~V~~l~fs~dg~--~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~--------~---------------- 112 (388)
T d1erja_ 60 DHTSVVCCVKFSNDGE--YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPEN--------L---------------- 112 (388)
T ss_dssp ECSSCCCEEEECTTSS--EEEEEC-BSCEEEEETTTCCEEEEECC-----------------------------------
T ss_pred CCCCCEEEEEECCCCC--EEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCC--------C----------------
T ss_conf 9999689999999999--999994-994899981364057663166544324432--------1----------------
Q ss_pred CCCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 98147950899947999986899979997028789860999647988146764177887636999858999999983899
Q 001534 531 LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF 610 (1058)
Q Consensus 531 ~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 610 (1058)
.......+...|.+++|+|+++++++++. ++.|++|+...++....+.+|.. .+.++.+++++..+++++.++
T Consensus 113 --~~~~~~~~~~~V~~l~~s~~~~~l~s~~~----dg~v~i~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~ 185 (388)
T d1erja_ 113 --NTSSSPSSDLYIRSVCFSPDGKFLATGAE----DRLIRIWDIENRKIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGDR 185 (388)
T ss_dssp --------CCCCBEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTS
T ss_pred --CCCCCCCCCCCEEEEEECCCCCCCEECCC----CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCE
T ss_conf --11014677898899998899980121344----41111211111111111111111-111101111111111222101
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCCCEEEEEC-CCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 09999789991489991689999814699907-99999999789939999978974001002587334457999998999
Q 001534 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSK 689 (1058)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1058)
.+++||..+.........+.. ..++.+.+ ++.++++++.||.|++|+..++. ....+.....
T Consensus 186 ~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~------------- 248 (388)
T d1erja_ 186 TVRIWDLRTGQCSLTLSIEDG---VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDSENE------------- 248 (388)
T ss_dssp EEEEEETTTTEEEEEEECSSC---EEEEEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC-----------------
T ss_pred EEEEEECCCCCCCCCCCCCCC---CCCCCCCCCCCCEEEEECCCCEEEEEECCCCC-CCEEECCCCC-------------
T ss_conf 565410111111000012454---42112368878758997389819996345573-0001024433-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 75334458876543224798899999999843454577887666677654333445532213577678663038863897
Q 001534 690 PLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDS 769 (1058)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~ 769 (1058)
...
T Consensus 249 -----------------------------------------------------------------------------~~~ 251 (388)
T d1erja_ 249 -----------------------------------------------------------------------------SGT 251 (388)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -----------------------------------------------------------------------------CCC
T ss_conf -----------------------------------------------------------------------------345
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 57676599999168745888312562899882567879887422345650037999873114668899999984599971
Q 001534 770 IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1058)
Q Consensus 770 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~i~~i~~s 849 (1058)
+|...|.+++|+|+++.+++++.|+.+++|++...... .....
T Consensus 252 ~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~------------------------------------~~~~~- 294 (388)
T d1erja_ 252 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK------------------------------------SDSKT- 294 (388)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------------------------------------------
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCC------------------------------------CCCCC-
T ss_conf 77898789999799999999978992898751577643------------------------------------21013-
Q ss_pred CCCCEEEEEECCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEE
Q ss_conf 69969999819939999877860899950798884899980799988999848970999993155367888177798689
Q 001534 850 KNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 929 (1058)
Q Consensus 850 ~d~~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~ 929 (1058)
............|...|.+++|+| ++++|++|+.||.|++||+.+++++..+++|.+.|++
T Consensus 295 ------------------~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~ 355 (388)
T d1erja_ 295 ------------------PNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355 (388)
T ss_dssp ----------------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred ------------------CCCCCEEEECCCCCCEEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEE
T ss_conf ------------------444200110124553278999889-9999999969897999999999699999688997899
Q ss_pred EEE------CCCCCEEEEEECCCCEEEEECC
Q ss_conf 999------5899989999389919999689
Q 001534 930 LAF------SPTLNALVSSGADAQLCMWSID 954 (1058)
Q Consensus 930 l~~------spd~~~l~s~s~D~~i~iwd~~ 954 (1058)
+++ +|++++|+|++.||+|++|+++
T Consensus 356 ~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 356 VAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEECCCCCCCCCCEEEEEECCCEEEEEEEE
T ss_conf 9984674258999999999189979997621
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.8e-39 Score=278.43 Aligned_cols=305 Identities=18% Similarity=0.302 Sum_probs=186.2
Q ss_pred EEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEE
Q ss_conf 53057678678999449993699998289939999857881468740888985799730468932999990799099996
Q 001534 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (1058)
Q Consensus 448 ~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd 527 (1058)
.|.+|.++|++++|+|+++ +|++|+.|++|++||+.+++.+.++.+|...|.+++|+++ +.+++++..++.+..|+
T Consensus 12 ~L~GH~~~I~~l~~sp~~~--~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~--~~~~~~~~~~~~~~~~~ 87 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS--GKLLASCSADMTIKLWD 87 (317)
T ss_dssp EEECCSSCEEEEEECSSSS--EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT--SSEEEEEETTSCCCEEE
T ss_pred EECCCCCCEEEEEECCCCC--EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECC--CCCCCCCCCCCCCCCCC
T ss_conf 9858888768999938989--9999938992999989999799999578886777763011--11011111111101110
Q ss_pred CCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 78898147950899947999986899979997028789860999647988146764177887636999858999999983
Q 001534 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1058)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 607 (1058)
.. .......+..+.. .+.++.++++++.+++++
T Consensus 88 ~~----------------------------------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 120 (317)
T d1vyhc1 88 FQ----------------------------------------------GFECIRTMHGHDH-NVSSVSIMPNGDHIVSAS 120 (317)
T ss_dssp TT----------------------------------------------SSCEEECCCCCSS-CEEEEEECSSSSEEEEEE
T ss_pred CC----------------------------------------------CCCCCCCCCCCCC-CCEEEECCCCCCEEEEEC
T ss_conf 01----------------------------------------------1111111000000-000000169985577652
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 89909999789991489991689999814699907999999997899399999789740010025873344579999989
Q 001534 608 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (1058)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1058)
.|+.+++|++.+++....+..+.. .+.+++|++++.++++++.|+.+++|+..++ .....+.+
T Consensus 121 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~-~~~~~~~~-------------- 183 (317)
T d1vyhc1 121 RDKTIKMWEVQTGYCVKTFTGHRE--WVRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAELRE-------------- 183 (317)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEECC--------------
T ss_pred CCCCEEEEECCCCEEEEEECCCCC--CCEEEECCCCCCEEEEEECCCEEEEEEECCC-EEEEEEEC--------------
T ss_conf 675235751144303468716777--6300001667999999927982999751254-03478824--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 99753344588765432247988999999998434545778876666776543334455322135776786630388638
Q 001534 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 767 (1058)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~ 767 (1058)
T Consensus 184 -------------------------------------------------------------------------------- 183 (317)
T d1vyhc1 184 -------------------------------------------------------------------------------- 183 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 97576765999991687458883125628998825678798874223456500379998731146688999999845999
Q 001534 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1058)
Q Consensus 768 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~i~~i~ 847 (1058)
+...+.++.++|++....... ........
T Consensus 184 ---~~~~i~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~ 212 (317)
T d1vyhc1 184 ---HRHVVECISWAPESSYSSISE------------------------------------------------ATGSETKK 212 (317)
T ss_dssp ---CSSCEEEEEECCSCGGGGGGG------------------------------------------------CCSCC---
T ss_pred ---CCCCCEEEEEEECCCCCEEEC------------------------------------------------CCCCEEEE
T ss_conf ---778733799863256411103------------------------------------------------45630343
Q ss_pred ECCCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCC
Q ss_conf 716996999981-9939999877860899950798884899980799988999848970999993155367888177798
Q 001534 848 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR 926 (1058)
Q Consensus 848 ~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~ 926 (1058)
...++.++++++ |+.|++|+..+++++..+.+|...|.+++|+| ++++|++|+.||.|++||+.+++++..+.+|.++
T Consensus 213 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~ 291 (317)
T d1vyhc1 213 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF 291 (317)
T ss_dssp ----CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSC
T ss_pred ECCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCC
T ss_conf 025886147516997899988899968899968899879999879-9999999979894999999999199999289998
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 68999958999899993899199996
Q 001534 927 ITGLAFSPTLNALVSSGADAQLCMWS 952 (1058)
Q Consensus 927 v~~l~~spd~~~l~s~s~D~~i~iwd 952 (1058)
|++++|+|++++|++++.|++|++||
T Consensus 292 V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 292 VTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 89999949999999992899499829
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.1e-39 Score=276.14 Aligned_cols=321 Identities=16% Similarity=0.241 Sum_probs=169.8
Q ss_pred CEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 25686028997369998159972999992788299998367653345751210133345321010136788673899988
Q 001534 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1058)
Q Consensus 338 ~~~~~~~h~~~V~~~~fspdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s 417 (1058)
.+...++|.+.|+|++|||||+ +||+|+ |+.|+||++.+++.+.. +..+.....
T Consensus 54 ~l~~~~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~-------------------~~~~~~~~~----- 107 (388)
T d1erja_ 54 ELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVAR-------------------LSDDSAANK----- 107 (388)
T ss_dssp EEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEE-------------------ECC-----------
T ss_pred EEEEECCCCCCEEEEEECCCCC-EEEEEE-CCEEEEEEECCCCEEEE-------------------ECCCCCCCC-----
T ss_conf 1076079999689999999999-999994-99489998136405766-------------------316654432-----
Q ss_pred CCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCC
Q ss_conf 99998999969995999980599820001453057678678999449993699998289939999857881468740888
Q 001534 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1058)
Q Consensus 418 pd~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~ 497 (1058)
+... ........|...|++++|+|+++ +|++|+.|+.|++||...++.+..+.+|.
T Consensus 108 ------------------~~~~----~~~~~~~~~~~~V~~l~~s~~~~--~l~s~~~dg~v~i~~~~~~~~~~~~~~h~ 163 (388)
T d1erja_ 108 ------------------DPEN----LNTSSSPSSDLYIRSVCFSPDGK--FLATGAEDRLIRIWDIENRKIVMILQGHE 163 (388)
T ss_dssp ---------------------------------CCCCBEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred ------------------CCCC----CCCCCCCCCCCCEEEEEECCCCC--CCEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ------------------4432----11101467789889999889998--01213444111121111111111111111
Q ss_pred CCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCC
Q ss_conf 98579973046893299999079909999678898147950899947999986899979997028789860999647988
Q 001534 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1058)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 577 (1058)
..|.++.+++. +..+++++.++.+++||...........
T Consensus 164 ~~v~~~~~~~~--~~~~~~~~~~~~i~~~d~~~~~~~~~~~--------------------------------------- 202 (388)
T d1erja_ 164 QDIYSLDYFPS--GDKLVSGSGDRTVRIWDLRTGQCSLTLS--------------------------------------- 202 (388)
T ss_dssp SCEEEEEECTT--SSEEEEEETTSEEEEEETTTTEEEEEEE---------------------------------------
T ss_pred CCCCCCCCCCC--CCCCCCCCCCEEEEEEECCCCCCCCCCC---------------------------------------
T ss_conf 11111011111--1111122210156541011111100001---------------------------------------
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC-----CCCCCCCCEEEEECCCCEEEEEEC
Q ss_conf 146764177887636999858999999983899099997899914899916-----899998146999079999999978
Q 001534 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA-----DGGLPASPRLRFNKEGSLLAVTTS 652 (1058)
Q Consensus 578 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~ 652 (1058)
.+.. .+....+.+++.++++++.|+.|++|+..++.....+.. ..+...|.+++|+|++.++++++.
T Consensus 203 -------~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 274 (388)
T d1erja_ 203 -------IEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274 (388)
T ss_dssp -------CSSC-EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred -------CCCC-CCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEC
T ss_conf -------2454-42112368878758997389819996345573000102443334577898789999799999999978
Q ss_pred CCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99399999789740010025873344579999989997533445887654322479889999999984345457788766
Q 001534 653 DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSR 732 (1058)
Q Consensus 653 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1058)
||.|++|++.++.... .....
T Consensus 275 d~~i~iwd~~~~~~~~-~~~~~---------------------------------------------------------- 295 (388)
T d1erja_ 275 DRSVKLWNLQNANNKS-DSKTP---------------------------------------------------------- 295 (388)
T ss_dssp TSEEEEEEC-----------------------------------------------------------------------
T ss_pred CCCEEEEECCCCCCCC-CCCCC----------------------------------------------------------
T ss_conf 9928987515776432-10134----------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf 66776543334455322135776786630388638975767659999916874588831256289988256787988742
Q 001534 733 LVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKA 812 (1058)
Q Consensus 733 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 812 (1058)
.. +. ....
T Consensus 296 --------------------------------------~~-----------~~---------~~~~-------------- 303 (388)
T d1erja_ 296 --------------------------------------NS-----------GT---------CEVT-------------- 303 (388)
T ss_dssp ----------------------------------------------------C---------EEEE--------------
T ss_pred --------------------------------------CC-----------CC---------EEEE--------------
T ss_conf --------------------------------------44-----------20---------0110--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEEE--
Q ss_conf 23456500379998731146688999999845999716996999981-993999987786089995079888489998--
Q 001534 813 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAF-- 889 (1058)
Q Consensus 813 ~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~i~~i~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~-- 889 (1058)
... | ...+.+++|+|++++|++++ ||.|++||+.+++++..+.+|.+.|+++++
T Consensus 304 --------------------~~~--~-~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~ 360 (388)
T d1erja_ 304 --------------------YIG--H-KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 360 (388)
T ss_dssp --------------------EEC--C-SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred --------------------CCC--C-CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEEC
T ss_conf --------------------124--5-53278999889999999996989799999999969999968899789999846
Q ss_pred ----ECCCCCEEEEEECCCEEEEEECC
Q ss_conf ----07999889998489709999931
Q 001534 890 ----HPQDNNIIAIGMEDSSVQIYNVR 912 (1058)
Q Consensus 890 ----s~~~~~~lasg~~dg~I~iwd~~ 912 (1058)
+| ++.+||+|+.||+|++|+++
T Consensus 361 ~~~~sp-d~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 361 GSSLGP-EYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp SCTTCT-TCEEEEEEETTSEEEEEEEE
T ss_pred CCCCCC-CCCEEEEEECCCEEEEEEEE
T ss_conf 742589-99999999189979997621
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.4e-38 Score=273.68 Aligned_cols=265 Identities=17% Similarity=0.298 Sum_probs=191.3
Q ss_pred CCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 28997369998159972999992788299998367653345751210133345321010136788673899988999989
Q 001534 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1058)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l 423 (1058)
+|.++|++++|+|+++ +|++|+.||.|+|||+.+++.+.. +.+|...|.+++|+|++.++
T Consensus 15 GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~~~~~~~ 74 (317)
T d1vyhc1 15 GHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSGKLL 74 (317)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred CCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEE-------------------EECCCCCEEEEEEECCCCCC
T ss_conf 8888768999938989-999993899299998999979999-------------------95788867777630111101
Q ss_pred EEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEE
Q ss_conf 99969995999980599820001453057678678999449993699998289939999857881468740888985799
Q 001534 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1058)
Q Consensus 424 a~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~i 503 (1058)
+++..++.+.+|+........ .+.+|...+.++.|++++. .+++++.|+.+++||+.+++.+..+.+|...+.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (317)
T d1vyhc1 75 ASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 149 (317)
T ss_dssp EEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCEEEECCCCCC--EEEEECCCCCEEEEECCCCEEEEEECCCCCCCEEE
T ss_conf 111111110111001111111---1000000000000169985--57765267523575114430346871677763000
Q ss_pred EECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEE
Q ss_conf 73046893299999079909999678898147950899947999986899979997028789860999647988146764
Q 001534 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1058)
Q Consensus 504 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1058)
+|++ ++.++++++.|+.+++|+.........+..+...+.++.++|++........
T Consensus 150 ~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------------------- 205 (317)
T d1vyhc1 150 RPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA---------------------- 205 (317)
T ss_dssp EECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC----------------------
T ss_pred ECCC--CCCEEEEEECCCEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECC----------------------
T ss_conf 0166--7999999927982999751254034788247787337998632564111034----------------------
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEECCC
Q ss_conf 17788763699985899999998389909999789991489991689999814699907999999997899399999789
Q 001534 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1058)
Q Consensus 584 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1058)
. ..........+..+++++.|+.|++|+..+++.+..+..+.. .+.+++++|++.+|++++.||.|++|++.+
T Consensus 206 ---~--~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 278 (317)
T d1vyhc1 206 ---T--GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKN 278 (317)
T ss_dssp ---C--SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred ---C--CCEEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCC--CEEEEEECCCCCEEEEEECCCEEEEEECCC
T ss_conf ---5--630343025886147516997899988899968899968899--879999879999999997989499999999
Q ss_pred C
Q ss_conf 7
Q 001534 664 G 664 (1058)
Q Consensus 664 ~ 664 (1058)
+
T Consensus 279 ~ 279 (317)
T d1vyhc1 279 K 279 (317)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.6e-38 Score=273.27 Aligned_cols=286 Identities=14% Similarity=0.205 Sum_probs=241.6
Q ss_pred CCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 99736999815997299999278829999836765334575121013334532101013678867389998899998999
Q 001534 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1058)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~la~ 425 (1058)
.+.+.+++++|+|+. ++.+. ++.|.+|++.++..... +.+|...|++++|+|+|++||+
T Consensus 17 r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~~-------------------~~~H~~~v~~~~~sp~g~~lat 75 (311)
T d1nr0a1 17 RGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCAS 75 (311)
T ss_dssp TTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEEE
T ss_pred CCCEEEEEECCCCCE-EEEEE-CCEEEEEECCCCCEEEE-------------------ECCCCCCEEEEEEECCCCEEEC
T ss_conf 887599999699899-99996-99999999999966179-------------------7478888899999489996722
Q ss_pred EECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECC--CCCEEEEECCCCCEEEEEECCCCCEEEE
Q ss_conf 96999599998059982000145305767867899944999369999828--9939999857881468740888985799
Q 001534 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1058)
Q Consensus 426 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~l~~~~~~v~~i 503 (1058)
|+.||.|++|++.++..... ..+.+|..+|.+++|+|+++ ++++++. +..+++|++.+++....+.+|...|.++
T Consensus 76 g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v 152 (311)
T d1nr0a1 76 GDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSV 152 (311)
T ss_dssp EETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEE
T ss_pred CCCCCEEEEEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 55673674663101111000-01343357543323331110--0011112211111111111111111111111111111
Q ss_pred EECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEE
Q ss_conf 73046893299999079909999678898147950899947999986899979997028789860999647988146764
Q 001534 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1058)
Q Consensus 504 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1058)
+|+|+.+ ..+++++.|+.|++||+++.+....+..|...+.++.|+|+++++++++. ++.+++||..++.....+
T Consensus 153 ~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~~~ 227 (311)
T d1nr0a1 153 DFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTGVF 227 (311)
T ss_dssp EECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEEEC
T ss_pred CCCCCCE-EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCC
T ss_conf 1121110-12000112211111111111111111111111111234764221211111----111100012446411222
Q ss_pred C-------CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCE
Q ss_conf 1-------778876369998589999999838990999978999148999168999981469990799999999789939
Q 001534 584 S-------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1058)
Q Consensus 584 ~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 656 (1058)
. +|.. .|.+++|+|++++|++++.||.|++||+.+++++..+..+... ....+.+.+++..+++++.||.|
T Consensus 228 ~~~~~~~~~h~~-~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~i 305 (311)
T d1nr0a1 228 EDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGFI 305 (311)
T ss_dssp BCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCCE
T ss_pred CCCCCCCCCCCC-CCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC-CCEEEEEEECCCEEEEEECCCEE
T ss_conf 111111100246-5321024788999999937996999999999699999799986-33299999519999999899979
Q ss_pred EEEECC
Q ss_conf 999978
Q 001534 657 KILANS 662 (1058)
Q Consensus 657 ~iw~~~ 662 (1058)
++||.+
T Consensus 306 ~~wd~d 311 (311)
T d1nr0a1 306 NFVNPE 311 (311)
T ss_dssp EEEETT
T ss_pred EEEECC
T ss_conf 999588
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.5e-38 Score=270.99 Aligned_cols=149 Identities=15% Similarity=0.227 Sum_probs=68.6
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCEEE--EEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEE
Q ss_conf 7886738999889999899996999599998059982000--14530576786789994499936999982899399998
Q 001534 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQ--HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1058)
Q Consensus 406 ~h~~~v~~i~~spd~~~la~~~~d~~i~iwd~~~~~~~~~--~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd 483 (1058)
+|...|.+++|+|+|++|++|+ ||.|+|||+..+..... .....+|.+.|.+++|+|+++ +|++++.|+.|++||
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~--~l~s~~~dg~i~iwd 125 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWD 125 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCC--EEEEEECCCCCCCCC
T ss_conf 9999289999989999999997-9988997736776331168764048899689999867998--898861233211111
Q ss_pred CCCC--CEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEE
Q ss_conf 5788--146874088898579973046893299999079909999678898147950899947999986899979997
Q 001534 484 VVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1058)
Q Consensus 484 ~~~~--~~~~~l~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~ 559 (1058)
+... +....+..|...+.+++|+++ +.++++++.|+.+++|++.+.........+...+.+++|++++..++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~ 201 (337)
T d1gxra_ 126 LAAPTPRIKAELTSSAPACYALAISPD--SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG 201 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 111111111111111111111111111--1111111111111111111111111111111111101234443211223
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.9e-36 Score=257.89 Aligned_cols=291 Identities=19% Similarity=0.300 Sum_probs=245.5
Q ss_pred EEEEEC-CCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 568602-8997369998159972999992788299998367653345751210133345321010136788673899988
Q 001534 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1058)
Q Consensus 339 ~~~~~~-h~~~V~~~~fspdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s 417 (1058)
..+++. |.++|+|++|+|+++ +|++|+.||.|+|||+.+++.+.. +..|...|.+++|+
T Consensus 47 ~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~~~ 106 (340)
T d1tbga_ 47 TRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAYA 106 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEEEC
T ss_pred EEEEECCCCCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCEEEEE-------------------EECCCCCEEEEEEE
T ss_conf 5279888789888999989999-999997899555631021025799-------------------72465337756760
Q ss_pred CCCCEEEEEECCCEEEEEEECCCCCE-EEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECC
Q ss_conf 99998999969995999980599820-00145305767867899944999369999828993999985788146874088
Q 001534 418 PDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1058)
Q Consensus 418 pd~~~la~~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~ 496 (1058)
|++.++++++.|+.+.+|+....... .....+.+|...........+. .+.....+.....+.............+
T Consensus 107 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (340)
T d1tbga_ 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGH 183 (340)
T ss_dssp TTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEECC
T ss_pred CCCEEEEEECCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1211443101332010133222212221110013542110111111111---1111124454320012322111112331
Q ss_pred CCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCC
Q ss_conf 89857997304689329999907990999967889814795089994799998689997999702878986099964798
Q 001534 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1058)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~ 576 (1058)
...+....+.+. ..++++++.|+.+++||+++......+..|...|.+++|+|+++++++++. ++.+++|+...
T Consensus 184 ~~~~~~~~~~~~--~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~~~ 257 (340)
T d1tbga_ 184 TGDVMSLSLAPD--TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLRA 257 (340)
T ss_dssp SSCEEEEEECTT--SSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTT
T ss_pred CEEEEEECCCCC--CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEC----CCEEEEEEECC
T ss_conf 015763001244--212687605736999999999488999578898589999799899999969----99699975212
Q ss_pred CCEEEEECCC-CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCC
Q ss_conf 8146764177-887636999858999999983899099997899914899916899998146999079999999978993
Q 001534 577 GAIKRTYSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1058)
Q Consensus 577 ~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1058)
......+... ....+.+++|+|+++++++++.||.|++||+.+++.+..+..|.. .|.+++|+|++.+|++++.||.
T Consensus 258 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~--~V~~l~~s~d~~~l~s~s~Dg~ 335 (340)
T d1tbga_ 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp TEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTSC
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCC--CEEEEEEECCCCEEEEECCCCE
T ss_conf 21111111224457458999989999999997979899999999939899848999--7899999089999999906997
Q ss_pred EEEEE
Q ss_conf 99999
Q 001534 656 IKILA 660 (1058)
Q Consensus 656 i~iw~ 660 (1058)
|++||
T Consensus 336 v~iWd 340 (340)
T d1tbga_ 336 LKIWN 340 (340)
T ss_dssp EEEEC
T ss_pred EEEEC
T ss_conf 99859
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.1e-36 Score=258.85 Aligned_cols=225 Identities=19% Similarity=0.282 Sum_probs=123.9
Q ss_pred CCCCCCCCE-EEEEECCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEE
Q ss_conf 136788673-8999889999899996999599998059982000145305767867899944999369999828993999
Q 001534 403 LLNDAAISV-NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1058)
Q Consensus 403 ~~~~h~~~v-~~i~~spd~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~i 481 (1058)
.|+||...| +|++| ++++|++|+.|++|++||+.+++.+. .+.+|.++|++++|++++ ++++++.|+.|++
T Consensus 7 tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~i 78 (355)
T d1nexb2 7 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 78 (355)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEEE
T ss_pred EECCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEE---EEECCCCCEEEEEECCCC---EEEEEECCCCCCC
T ss_conf 889837886999998--89999999189909999899993999---997899988999986999---9999964524432
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 98578814687408889857997304689329999907990999967889814795089994799998689997999702
Q 001534 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1058)
Q Consensus 482 wd~~~~~~~~~l~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~ 561 (1058)
|+....+....................+++..+++++.|+.|++|++................
T Consensus 79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~----------------- 141 (355)
T d1nexb2 79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP----------------- 141 (355)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC-----------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEEC-----------------
T ss_conf 111111111111001111111111111232204554388868999856773001246520001-----------------
Q ss_pred CCCCCCEEEEEEC-CCCCEEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf 8789860999647-988146764177887636999858999999983899099997899914899916899998146999
Q 001534 562 SKEGESHLVEWNE-SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1058)
Q Consensus 562 ~~~~~~~i~iwd~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1058)
...+.. ...........+.. .+ ..+.++++.++++..|+.+++||+.+++.+.....+.. .+.++.+
T Consensus 142 -------~~~~~~~~~~~~~~~~~~~~~-~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~ 209 (355)
T d1nexb2 142 -------LVFHTPEENPYFVGVLRGHMA-SV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD--RIYSTIY 209 (355)
T ss_dssp -------EEESCTTTCTTEEEEEECCSS-CE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEE
T ss_pred -------CCEECCCCCCCEEEEEEECCC-CC--CCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCC--CCCCCCC
T ss_conf -------000001123401210110022-21--00002563344211442044430131100011000123--3211111
Q ss_pred ECCCCEEEEEECCCCEEEEECCCC
Q ss_conf 079999999978993999997897
Q 001534 641 NKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
++++..+++++.|+.|++|+..++
T Consensus 210 ~~~~~~~~~~~~d~~i~i~d~~~~ 233 (355)
T d1nexb2 210 DHERKRCISASMDTTIRIWDLENG 233 (355)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTC
T ss_pred CCCCEEEECCCCCCEEEEEECCCC
T ss_conf 121002101245636876301221
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.2e-37 Score=265.60 Aligned_cols=264 Identities=12% Similarity=0.051 Sum_probs=206.4
Q ss_pred CCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 99736999815997299999278829999836765334575121013334532101013678867389998899998999
Q 001534 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1058)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~la~ 425 (1058)
.++|+|++|||||+ ++|+|+.||.|+||++.+++.... ..+.+|.++|.+++|+|++++|++
T Consensus 7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~-----------------~~l~gH~~~V~~l~fsp~~~~l~s 68 (371)
T d1k8kc_ 7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQV-----------------HELKEHNGQVTGVDWAPDSNRIVT 68 (371)
T ss_dssp SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEEETTTTEEEE
T ss_pred CCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEE-----------------EEECCCCCCEEEEEECCCCCEEEE
T ss_conf 98838999989999-999994889899998889978999-----------------995588998889999799999999
Q ss_pred EECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEE----EEEECCCCCEE
Q ss_conf 96999599998059982000145305767867899944999369999828993999985788146----87408889857
Q 001534 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ----YTFEGHEAPVY 501 (1058)
Q Consensus 426 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~~----~~l~~~~~~v~ 501 (1058)
++.|+.|++|++.++... ....+.+|...|++++|+|+++ .+++++.|+.+++|++...... .....|...|.
T Consensus 69 ~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~ 145 (371)
T d1k8kc_ 69 CGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 145 (371)
T ss_dssp EETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred EECCCEEEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCC--CCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 979993999862033211-0012232211000111111121--1000002576302544203343311100101112221
Q ss_pred EEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEE
Q ss_conf 99730468932999990799099996788981479508999479999868999799970287898609996479881467
Q 001534 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1058)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 581 (1058)
+++|+| ++.++++++.|+.+++|+............. + ...+...+....
T Consensus 146 ~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~----------~------------------~~~~~~~~~~~~ 195 (371)
T d1k8kc_ 146 SLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPT----------P------------------WGSKMPFGELMF 195 (371)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCB----------T------------------TBSCCCTTCEEE
T ss_pred CCCCCC--CCCCEECCCCCCEEEEEEECCCCCCCCCCCC----------C------------------CCCCCCCEEEEE
T ss_conf 111111--1111000134767999840157643100122----------1------------------111111101124
Q ss_pred EECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEC
Q ss_conf 64177887636999858999999983899099997899914899916899998146999079999999978993999997
Q 001534 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1058)
Q Consensus 582 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 661 (1058)
....|.. .+.+++|+|+++++++++.|+.|++||+..+..+..+..+.. +|.+++|+|++.++++| .|+.+++|..
T Consensus 196 ~~~~~~~-~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~s~~fs~d~~~la~g-~d~~~~~~~~ 271 (371)
T d1k8kc_ 196 ESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTY 271 (371)
T ss_dssp ECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred ECCCCCC-CEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCC--CCEEEEECCCCCEEEEE-CCCCEEEEEE
T ss_conf 4047667-478987512332100001478605886410121000001466--52036546999799998-1992678776
Q ss_pred CCC
Q ss_conf 897
Q 001534 662 SDG 664 (1058)
Q Consensus 662 ~~~ 664 (1058)
...
T Consensus 272 ~~~ 274 (371)
T d1k8kc_ 272 DSA 274 (371)
T ss_dssp ETT
T ss_pred ECC
T ss_conf 089
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.7e-35 Score=252.69 Aligned_cols=78 Identities=17% Similarity=0.264 Sum_probs=38.8
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEE
Q ss_conf 36788673899988999989999699959999805998200014530576786789994499936999982899399998
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1058)
Q Consensus 404 ~~~h~~~v~~i~~spd~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd 483 (1058)
+.||.+.|++++|+|++++||+|+.||.|++||+.+++.+. .+..|..+|.+++|+|++. ++++++.|+.+.+|+
T Consensus 51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~~ 125 (340)
T d1tbga_ 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEEE
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEE---EEECCCCCEEEEEEECCCE--EEEEECCCCEEECCC
T ss_conf 88878988899998999999999789955563102102579---9724653377567601211--443101332010133
Q ss_pred CCC
Q ss_conf 578
Q 001534 484 VVA 486 (1058)
Q Consensus 484 ~~~ 486 (1058)
...
T Consensus 126 ~~~ 128 (340)
T d1tbga_ 126 LKT 128 (340)
T ss_dssp SSS
T ss_pred CCC
T ss_conf 222
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4e-36 Score=256.95 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=84.8
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCC
Q ss_conf 88673899988999989999699959999805998200014530576786789994499936999982899399998578
Q 001534 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1058)
Q Consensus 407 h~~~v~~i~~spd~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~ 486 (1058)
...+|+|++|+||+++||+|+.|+.|++|+..+++. .....+.+|.++|++++|+|+++ +|++++.|++|++||+.+
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-~~~~~l~gH~~~V~~l~fsp~~~--~l~s~s~D~~i~vWd~~~ 82 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKG 82 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-EEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE-EEEEEECCCCCCEEEEEECCCCC--EEEEEECCCEEEEEEECC
T ss_conf 998838999989999999994889899998889978-99999558899888999979999--999997999399986203
Q ss_pred CCEE--EEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCC
Q ss_conf 8146--8740888985799730468932999990799099996788
Q 001534 487 GRKQ--YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (1058)
Q Consensus 487 ~~~~--~~l~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~ 530 (1058)
+... ..+.+|...|.+++|+|+ ++.+++++.|+.+++|+++.
T Consensus 83 ~~~~~~~~~~~~~~~v~~i~~~p~--~~~l~~~s~d~~i~i~~~~~ 126 (371)
T d1k8kc_ 83 RTWKPTLVILRINRAARCVRWAPN--EKKFAVGSGSRVISICYFEQ 126 (371)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTT--SSEEEEEETTSSEEEEEEET
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC--CCCCEEECCCCCCEEEEEEC
T ss_conf 321100122322110001111111--21100000257630254420
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.3e-35 Score=253.51 Aligned_cols=119 Identities=18% Similarity=0.310 Sum_probs=55.0
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCE-EEEEECCCEEEEEECCC
Q ss_conf 99479999868999799970287898609996479881467641778876369998589999-99983899099997899
Q 001534 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR-FLAAGDEFQIKFWDMDN 619 (1058)
Q Consensus 541 ~~~v~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~iwd~~~ 619 (1058)
...|.+++|+|+++++++++.+ .+..+.+|+..+++....+.+|.. .+.+++|+|++++ +++++.|+.|++||+++
T Consensus 102 ~~~v~~v~~s~d~~~l~~~~~~--~~~~~~v~~~~~~~~~~~l~~h~~-~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~ 178 (311)
T d1nr0a1 102 SGPVKDISWDSESKRIAAVGEG--RERFGHVFLFDTGTSNGNLTGQAR-AMNSVDFKPSRPFRIISGSDDNTVAIFEGPP 178 (311)
T ss_dssp SSCEEEEEECTTSCEEEEEECC--SSCSEEEEETTTCCBCBCCCCCSS-CEEEEEECSSSSCEEEEEETTSCEEEEETTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 5754332333111000111122--111111111111111111111111-1111111211101200011221111111111
Q ss_pred CCEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEECCCC
Q ss_conf 914899916899998146999079999999978993999997897
Q 001534 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
++....+..+.. .|.++.|+|+++++++++.|+.+++|+..++
T Consensus 179 ~~~~~~~~~~~~--~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~ 221 (311)
T d1nr0a1 179 FKFKSTFGEHTK--FVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 221 (311)
T ss_dssp BEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 111111111111--1111234764221211111111100012446
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-34 Score=246.28 Aligned_cols=99 Identities=17% Similarity=0.300 Sum_probs=47.2
Q ss_pred CEEEEEE-CCEEEEEECCCCEEEEEECC---CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEE-----CC
Q ss_conf 6999981-99399998778608999507---988848999807999889998489709999931553678881-----77
Q 001534 853 SYVMSAS-GGKVSLFNMMTFKVMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-----GH 923 (1058)
Q Consensus 853 ~~la~~s-dg~i~iwd~~~~~~~~~~~~---~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~-----~h 923 (1058)
+++++++ |+.|++|+....+....+.. |...+.++.++ +.++++|+.||.|++||+.+++++..+. +|
T Consensus 228 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~ 304 (342)
T d2ovrb2 228 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS 304 (342)
T ss_dssp TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG
T ss_pred CEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECEEECCCC---CCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 999997489889998655442211122100011010000137---98449990899899999999979899862347898
Q ss_pred CCCEEEEEECCCCCEEEEEECCCC----EEEEECC
Q ss_conf 798689999589998999938991----9999689
Q 001534 924 QNRITGLAFSPTLNALVSSGADAQ----LCMWSID 954 (1058)
Q Consensus 924 ~~~v~~l~~spd~~~l~s~s~D~~----i~iwd~~ 954 (1058)
.+.|++++|+|++.++++++.||+ |++||++
T Consensus 305 ~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 305 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp TCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECC
T ss_conf 89789999879998999996899970489999389
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.1e-34 Score=242.64 Aligned_cols=148 Identities=13% Similarity=0.173 Sum_probs=76.7
Q ss_pred CCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEE
Q ss_conf 99845999716996999981-99399998778608999507988848999807999889998489709999931553678
Q 001534 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1058)
Q Consensus 840 ~~~i~~i~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~ 918 (1058)
...+.++.+++++.++++++ |+.|++|+..++..+..+.+|...|.++++++ ++|++|+.||.|++||+.++..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~-- 275 (355)
T d1nexb2 201 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSR-- 275 (355)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCCE--
T ss_pred CCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC---CEEEEEECCCCCCCCCCCCCCE--
T ss_conf 23321111112100210124563687630122111111111111111112321---0033320111111111111110--
Q ss_pred EEECCCCCEEEE-EECCCCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCEEEEE-ECCE
Q ss_conf 881777986899-99589998999938991999968987400102432578989999780389996899699999-4991
Q 001534 919 KLKGHQNRITGL-AFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQ 996 (1058)
Q Consensus 919 ~l~~h~~~v~~l-~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d~~~l~~~-~d~~ 996 (1058)
.+..|...+.++ .+++++++++++ .|+.|++||+++++.+.. ...+|. ..|.+++|+|+. +++++ .||.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~----~~~~~~---~~V~~v~~~~~~-~~~~~s~dg~ 346 (355)
T d1nexb2 276 KFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHA----NILKDA---DQIWSVNFKGKT-LVAAVEKDGQ 346 (355)
T ss_dssp EEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCS----CTTTTC---SEEEEEEEETTE-EEEEEESSSC
T ss_pred ECCCCCCCCEEEEEECCCCCEEEEE-ECCEEEEEECCCCCEEEE----EECCCC---CCEEEEEECCCE-EEEEEECCCC
T ss_conf 0012468822999984999899998-099799999999979888----845899---989999983991-9999989890
Q ss_pred EEEEE
Q ss_conf 99991
Q 001534 997 ISVYD 1001 (1058)
Q Consensus 997 i~iwd 1001 (1058)
++||.
T Consensus 347 ~~l~~ 351 (355)
T d1nexb2 347 SFLEI 351 (355)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99999
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.5e-35 Score=250.52 Aligned_cols=287 Identities=10% Similarity=0.093 Sum_probs=123.4
Q ss_pred EEEEC-CCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 68602-89973699981599729999927882999983676533457512101333453210101367886738999889
Q 001534 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1058)
Q Consensus 340 ~~~~~-h~~~V~~~~fspdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp 418 (1058)
.+++. |.++|+|++|+||++ +|++|+.||.|++||+.+++.... ...+|...|++++|+|
T Consensus 5 ~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~------------------~~~~h~~~v~~v~~~~ 65 (299)
T d1nr0a2 5 DQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRV------------------FPDVHATMITGIKTTS 65 (299)
T ss_dssp EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEC------------------SSCSCSSCEEEEEECT
T ss_pred CEECCCCCCCCEEEEECCCCC-EEEEECCCCEEEEEECCCCCEEEE------------------ECCCCCCCEEEEEEEC
T ss_conf 368488887828999979999-999990899299999999968899------------------8378877489988403
Q ss_pred CCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCC
Q ss_conf 99989999699959999805998200014530576786789994499936999982899399998578814687408889
Q 001534 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1058)
Q Consensus 419 d~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~ 498 (1058)
++.++ +++.|+.+++|+...............+...+.+++|++++. ++++++ ++.+.+|+.. +..... ...
T Consensus 66 ~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~~-~~~i~~~~~~--~~~~~~--~~~ 137 (299)
T d1nr0a2 66 KGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAAC-YKHIAIYSHG--KLTEVP--ISY 137 (299)
T ss_dssp TSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEEE-SSEEEEEETT--EEEEEE--CSS
T ss_pred CCEEE-CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCC-CCCCCCCCCC--CCCCCC--CCC
T ss_conf 31121-023102688731677620111000111134432100112211--111222-2222111111--111101--111
Q ss_pred CEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEE-EECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCC
Q ss_conf 8579973046893299999079909999678898147-950899947999986899979997028789860999647988
Q 001534 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1058)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 577 (1058)
.+.+++|++ ++.++++++.|+.+++||+++..... ....|...+.+++|+|+++++++++. ++.+++||..++
T Consensus 138 ~~~~~~~s~--~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~~~~ 211 (299)
T d1nr0a2 138 NSSCVALSN--DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSVANN 211 (299)
T ss_dssp CEEEEEECT--TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEGGGT
T ss_pred CCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCC
T ss_conf 233221111--11111111111111111111111111111111111111111111111111111----111111111111
Q ss_pred CEEE---EECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCC-CCCCCCEEEEECCCCEEEEEECC
Q ss_conf 1467---6417788763699985899999998389909999789991489991689-99981469990799999999789
Q 001534 578 AIKR---TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-GLPASPRLRFNKEGSLLAVTTSD 653 (1058)
Q Consensus 578 ~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d 653 (1058)
.... .+.+|.. .+.+++|+|++.++++++.||.|++||+.++.......... +...+.++. .+++.+|++++.|
T Consensus 212 ~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~s~D 289 (299)
T d1nr0a2 212 FELAHTNSWTFHTA-KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQD 289 (299)
T ss_dssp TEESCCCCCCCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEEETT
T ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEE-ECCCCEEEEEECC
T ss_conf 11111111111111-111112466645138882899799998999973148983489889689999-7798999999289
Q ss_pred CCEEEEEC
Q ss_conf 93999997
Q 001534 654 NGIKILAN 661 (1058)
Q Consensus 654 g~i~iw~~ 661 (1058)
+.|++|++
T Consensus 290 ~~i~iWdl 297 (299)
T d1nr0a2 290 SNIKFWNV 297 (299)
T ss_dssp SCEEEEEC
T ss_pred CEEEEEEC
T ss_conf 97999944
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-33 Score=238.39 Aligned_cols=50 Identities=16% Similarity=0.288 Sum_probs=18.5
Q ss_pred EEEEEE-CCEEEEEECCCCEEEEEEC-----CCCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf 999981-9939999877860899950-----79888489998079998899984897
Q 001534 854 YVMSAS-GGKVSLFNMMTFKVMTMFM-----SPPPAATFLAFHPQDNNIIAIGMEDS 904 (1058)
Q Consensus 854 ~la~~s-dg~i~iwd~~~~~~~~~~~-----~~~~~i~~l~~s~~~~~~lasg~~dg 904 (1058)
++++++ ||.|++||+.++++++.+. +|...|++++|+| ++.++|+|+.||
T Consensus 272 ~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~-~~~~la~g~~dG 327 (342)
T d2ovrb2 272 FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNG 327 (342)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSS
T ss_pred EEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECC-CCCEEEEEECCC
T ss_conf 44999089989999999997989986234789889789999879-998999996899
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.8e-34 Score=243.50 Aligned_cols=291 Identities=16% Similarity=0.239 Sum_probs=179.6
Q ss_pred CCEEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCE
Q ss_conf 81467641778876369998589999999838990999978999148999168999981469990799999999789939
Q 001534 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1058)
Q Consensus 577 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 656 (1058)
|...+.+.||.. .|.+++|+|++++|++++.||.|++||+.+++....+.. .+...|.+++|+|++.+ ++++.|+.+
T Consensus 2 g~~~~~~~GH~~-~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~h~~~v~~v~~~~~g~~-~~~~~d~~v 78 (299)
T d1nr0a2 2 GSIDQVRYGHNK-AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD-VHATMITGIKTTSKGDL-FTVSWDDHL 78 (299)
T ss_dssp TEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC-SCSSCEEEEEECTTSCE-EEEETTTEE
T ss_pred CCCCEECCCCCC-CCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECC-CCCCCEEEEEEECCCEE-ECCCCEEEE
T ss_conf 861368488887-828999979999999990899299999999968899837-88774899884033112-102310268
Q ss_pred EEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99997897400100258733445799999899975334458876543224798899999999843454577887666677
Q 001534 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1058)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1058)
++|+..... . .....
T Consensus 79 ~~~~~~~~~-~-~~~~~--------------------------------------------------------------- 93 (299)
T d1nr0a2 79 KVVPAGGSG-V-DSSKA--------------------------------------------------------------- 93 (299)
T ss_dssp EEECSSSSS-S-CTTSC---------------------------------------------------------------
T ss_pred EEECCCCCC-C-CCCCC---------------------------------------------------------------
T ss_conf 873167762-0-11100---------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 65433344553221357767866303886389757676599999168745888312562899882567879887422345
Q 001534 737 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 816 (1058)
Q Consensus 737 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 816 (1058)
.. ..+...+.++++++++..++++ .++.+.+|+...
T Consensus 94 -------------------------~~-----~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~~------------- 129 (299)
T d1nr0a2 94 -------------------------VA-----NKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHGK------------- 129 (299)
T ss_dssp -------------------------CE-----EECSSCEEEEEECTTSSCEEEE-ESSEEEEEETTE-------------
T ss_pred -------------------------CC-----CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC-------------
T ss_conf -------------------------01-----1113443210011221111122-222221111111-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCEEEE-EECCCCCCEEEEEEECCCC
Q ss_conf 6500379998731146688999999845999716996999981-9939999877860899-9507988848999807999
Q 001534 817 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMT-MFMSPPPAATFLAFHPQDN 894 (1058)
Q Consensus 817 ~~~l~~~~~~~~~~~~~~~~~h~~~~i~~i~~s~d~~~la~~s-dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~ 894 (1058)
... .. . ...+.+++|+|+++++++++ |+.|.+||+.+++... ....|...|++++|+| ++
T Consensus 130 -----------~~~--~~---~-~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 191 (299)
T d1nr0a2 130 -----------LTE--VP---I-SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN-NG 191 (299)
T ss_dssp -----------EEE--EE---C-SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECT-TS
T ss_pred -----------CCC--CC---C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC
T ss_conf -----------111--01---1-112332211111111111111111111111111111111111111111111111-11
Q ss_pred CEEEEEECCCEEEEEECCCCEEE---EEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCC
Q ss_conf 88999848970999993155367---888177798689999589998999938991999968987400102432578989
Q 001534 895 NIIAIGMEDSSVQIYNVRVDEVK---TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ 971 (1058)
Q Consensus 895 ~~lasg~~dg~I~iwd~~~~~~~---~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 971 (1058)
+++++++.|+.|++|++.++... ..+.+|..+|++++|+|++++|++++.|+.|++|++.++..... . ....|.
T Consensus 192 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~--~-~~~~~~ 268 (299)
T d1nr0a2 192 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI--I-IKGAHA 268 (299)
T ss_dssp SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCE--E-ETTSST
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEE--E-EECCCC
T ss_conf 1111111111111111111111111111111111111112466645138882899799998999973148--9-834898
Q ss_pred CCCCCEEEEEECCCCCEEEEE-ECCEEEEEECC
Q ss_conf 999780389996899699999-49919999189
Q 001534 972 SPLVGETKVQFHNDQTHLLVV-HESQISVYDSK 1003 (1058)
Q Consensus 972 ~~~~~v~~~~fs~d~~~l~~~-~d~~i~iwd~~ 1003 (1058)
. ..+..+. ++++++|+++ .|+.|++||++
T Consensus 269 ~--~~v~~~~-~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 269 M--SSVNSVI-WLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp T--SCEEEEE-EEETTEEEEEETTSCEEEEECC
T ss_pred C--CCEEEEE-ECCCCEEEEEECCCEEEEEECC
T ss_conf 8--9689999-7798999999289979999444
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-33 Score=239.24 Aligned_cols=291 Identities=12% Similarity=0.193 Sum_probs=221.0
Q ss_pred CCEEEEEEECCCCEEEEEEECCC-CEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCEEEEEECC--CCCE
Q ss_conf 97369998159972999992788-29999836765334575121013334532101013678-86738999889--9998
Q 001534 347 SNVMSMDFHPQQQTILLVGTNVG-DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA-AISVNRCVWGP--DGLM 422 (1058)
Q Consensus 347 ~~V~~~~fspdg~~lla~g~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~i~~sp--d~~~ 422 (1058)
..+++++|+|+++. ++.++.+. .|+.|+........ ...+.+| ...|++++|+| ++.+
T Consensus 18 ~~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~-----------------~~~~~gh~~~~v~~v~fsP~~~g~~ 79 (325)
T d1pgua1 18 NFTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPP-----------------VVQFTGHGSSVVTTVKFSPIKGSQY 79 (325)
T ss_dssp TCCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCS-----------------EEEECTTTTSCEEEEEECSSTTCCE
T ss_pred CCEEEEEECCCCCE-EEEEECCCEEEEEEECCCCCCCC-----------------EEEEECCCCCCEEEEEEEECCCCCE
T ss_conf 98479999899799-99996998799997688887650-----------------2899078999889999811799979
Q ss_pred EEEEECCCEEEEEEECCCCCEEEE-----EEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCC
Q ss_conf 999969995999980599820001-----453057678678999449993699998289939999857881468740888
Q 001534 423 LGVAFSKHIVHLYTYNPTGELRQH-----LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1058)
Q Consensus 423 la~~~~d~~i~iwd~~~~~~~~~~-----~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~ 497 (1058)
|++|+.||+|++||+..+...... ..+..|.++|.+++|+++++.+..++.+.++.+.+|++.+++.+..+.+|.
T Consensus 80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 159 (325)
T d1pgua1 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS 159 (325)
T ss_dssp EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS
T ss_pred EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCEEEEECC
T ss_conf 99994899779854058862156510025411365673779998999882201001244047888502331100120012
Q ss_pred CCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEEC---CCCCCEEEEEECCC-CCEEEEEECCCCCCCEEEEEE
Q ss_conf 98579973046893299999079909999678898147950---89994799998689-997999702878986099964
Q 001534 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWN 573 (1058)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~i~~s~~-~~~l~~~~~~~~~~~~i~iwd 573 (1058)
..|.+++|++..+ ..+++++.|+.+++|+....+...... .+...+.+++|+|+ +.++++++. |+.|++||
T Consensus 160 ~~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~----d~~i~iwd 234 (325)
T d1pgua1 160 QRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCFD 234 (325)
T ss_dssp SCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEEE
T ss_pred CCCCCCCCCCCCC-CEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCC----CCCEEEEE
T ss_conf 3432111123432-068886211122111122110000000015777752776303453100001123----32101343
Q ss_pred CCCCCEEEEECCCCCCCEEEEEEC---CCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEC-CCCEEEE
Q ss_conf 798814676417788763699985---899999998389909999789991489991689999814699907-9999999
Q 001534 574 ESEGAIKRTYSGFRKRSLGVVQFD---TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAV 649 (1058)
Q Consensus 574 ~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~ 649 (1058)
.++++.+..+.+|.. .+..+.|+ +++.+|++++.|+.|++||+.+++.+..+..+.+...+..+++.+ .+.++++
T Consensus 235 ~~~~~~~~~l~~~~~-~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 313 (325)
T d1pgua1 235 GKSGEFLKYIEDDQE-PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 313 (325)
T ss_dssp TTTCCEEEECCBTTB-CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred ECCCCCCCCCCCCCC-CCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEE
T ss_conf 001222111111111-1111000000368999999958993999999999788999954874067699999889999999
Q ss_pred EECCCCEEEEEC
Q ss_conf 978993999997
Q 001534 650 TTSDNGIKILAN 661 (1058)
Q Consensus 650 ~~~dg~i~iw~~ 661 (1058)
++.||.|++|++
T Consensus 314 ~s~dg~i~vwdl 325 (325)
T d1pgua1 314 LSLDGTLNFYEL 325 (325)
T ss_dssp EETTSCEEEEET
T ss_pred EECCCEEEEEEC
T ss_conf 979999999979
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.9e-31 Score=223.91 Aligned_cols=15 Identities=13% Similarity=0.474 Sum_probs=5.2
Q ss_pred EEEEECCCCCEEEEE
Q ss_conf 999982899399998
Q 001534 469 CIVTCGDDKMIKVWD 483 (1058)
Q Consensus 469 ~l~s~~~d~~i~iwd 483 (1058)
++++|+.||+|++||
T Consensus 79 ~lasgs~Dg~i~iWd 93 (325)
T d1pgua1 79 YLCSGDESGKVIVWG 93 (325)
T ss_dssp EEEEEETTSEEEEEE
T ss_pred EEEEEECCCCEEEEE
T ss_conf 999994899779854
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=3.9e-31 Score=222.97 Aligned_cols=212 Identities=11% Similarity=-0.036 Sum_probs=147.8
Q ss_pred EEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECC
Q ss_conf 29999927882999983676533457512101333453210101367886738999889999899996999599998059
Q 001534 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1058)
Q Consensus 360 ~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~la~~~~d~~i~iwd~~~ 439 (1058)
.++++.+.+|.|.|||..+++.+.. +..+ ..+..++|||||+++++++.|+.+.+||+.+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t 92 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM 92 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred EEEEEECCCCEEEEEECCCCCEEEE-------------------EECC-CCEEEEEECCCCCEEEEECCCCCEEEEEEEC
T ss_conf 8999976999799998999839999-------------------7379-9713799889999999982899978998108
Q ss_pred CCCE--EEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEE
Q ss_conf 9820--00145305767867899944999369999828993999985788146874088898579973046893299999
Q 001534 440 TGEL--RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517 (1058)
Q Consensus 440 ~~~~--~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~i~~~~~~~~~~l~s~ 517 (1058)
++.. .......+|.+.+.+..|+|||++ ++++++.++.+++||..+++++..+..+...+....+.+.
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~--------- 162 (432)
T d1qksa2 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE--------- 162 (432)
T ss_dssp SSCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC---------
T ss_pred CCCEEEEEEECCCCCCCEEEECCCCCCCCE-EEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCC---------
T ss_conf 981288998448898776984321888888-9998178982799907655422540247764352201688---------
Q ss_pred ECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEC
Q ss_conf 07990999967889814795089994799998689997999702878986099964798814676417788763699985
Q 001534 518 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD 597 (1058)
Q Consensus 518 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 597 (1058)
.....+.+++++..++.... .++.+.+|+..+.+.........+.....+.|+
T Consensus 163 ------------------------~~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~s 215 (432)
T d1qksa2 163 ------------------------PRVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISAERFLHDGGLD 215 (432)
T ss_dssp ------------------------CCEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC
T ss_pred ------------------------CCEEEEEECCCCCEEEEEEC---CCCEEEEEECCCCCCCEEEEECCCCCCCCCEEC
T ss_conf ------------------------85058998789998999981---688299998437875227998336754265388
Q ss_pred CCCCEEEEEE-CCCEEEEEECCCCCEEEEEEC
Q ss_conf 8999999983-899099997899914899916
Q 001534 598 TTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDA 628 (1058)
Q Consensus 598 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 628 (1058)
|+++++++++ .++.+.+++..+++....+..
T Consensus 216 pdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~ 247 (432)
T d1qksa2 216 GSHRYFITAANARNKLVVIDTKEGKLVAIEDT 247 (432)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEECCCCCEEEEEECCCCEEEEEECC
T ss_conf 98879999516663677761445268887214
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.8e-31 Score=222.36 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=24.5
Q ss_pred CCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEE----EEEECCCCCEEE
Q ss_conf 79888489998079998899984897099999315536788817779868----999958999899
Q 001534 879 SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT----GLAFSPTLNALV 940 (1058)
Q Consensus 879 ~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~----~l~~spd~~~l~ 940 (1058)
+|...|++++|+| ++++|++|+.|++|++||+.+++++.++++|.+.|. .++|+|++..++
T Consensus 287 gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~ 351 (393)
T d1sq9a_ 287 AHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 351 (393)
T ss_dssp SBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred CCCCCEEEECCCC-CCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEEECCCCCEEE
T ss_conf 2358666001389-8880698779998999999999799999886876137734899999999999
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=7.6e-30 Score=214.23 Aligned_cols=250 Identities=10% Similarity=0.003 Sum_probs=154.1
Q ss_pred EECCCCE-EEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf 8159972-999992788299998367653345751210133345321010136788673899988999989999699959
Q 001534 354 FHPQQQT-ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432 (1058)
Q Consensus 354 fspdg~~-lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~la~~~~d~~i 432 (1058)
++.|.+. ++++.+.||.|+|||+.+++.+.. +..| ..+..++|||||+++++++.|+.+
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d~~v 85 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRDARI 85 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETTSEE
T ss_pred CCCCCCEEEEEEECCCCEEEEEECCCCCEEEE-------------------EECC-CCEEEEEECCCCCEEEEEECCCCE
T ss_conf 16798708999975999799999999959999-------------------9689-980389998999999999589988
Q ss_pred EEEEECCCCCEE--EEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCC
Q ss_conf 999805998200--014530576786789994499936999982899399998578814687408889857997304689
Q 001534 433 HLYTYNPTGELR--QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510 (1058)
Q Consensus 433 ~iwd~~~~~~~~--~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~i~~~~~~~ 510 (1058)
++||+.+++... ......+|...+.+++|+|||++ +++++..++.+.+||..++.++..+.++...+....+.+.+.
T Consensus 86 ~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (426)
T d1hzua2 86 DMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR 164 (426)
T ss_dssp EEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred EEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCCCE-EEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCC
T ss_conf 9997568860489998678887645885002688987-999635897699985776412578622677736436427885
Q ss_pred CCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEE-ECCCCCC
Q ss_conf 329999907990999967889814795089994799998689997999702878986099964798814676-4177887
Q 001534 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT-YSGFRKR 589 (1058)
Q Consensus 511 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~ 589 (1058)
...+ ..++++..++.... +.+.+.+++......... ...+..
T Consensus 165 -~~~i--------------------------------~~s~d~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~- 207 (426)
T d1hzua2 165 -VAAI--------------------------------IASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTSIGAAP- 207 (426)
T ss_dssp -EEEE--------------------------------EECSSSSEEEEEET---TTTEEEEEECSSSSSCEEEEEECCS-
T ss_pred -EEEE--------------------------------EECCCCCEEEEECC---CCCEEEEEEECCCCCEEEEEECCCC-
T ss_conf -0389--------------------------------98787878888527---8976999992466520457756677-
Q ss_pred CEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCE-EEE--EECCCCEEEEEC
Q ss_conf 636999858999999983-899099997899914899916899998146999079999-999--978993999997
Q 001534 590 SLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL-LAV--TTSDNGIKILAN 661 (1058)
Q Consensus 590 ~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~--~~~dg~i~iw~~ 661 (1058)
.+..+.++|++++++++. .+..+.+++..+++..................+...+.. +.. ...++.+.+|+.
T Consensus 208 ~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~ 283 (426)
T d1hzua2 208 FLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGT 283 (426)
T ss_dssp SEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEEC
T ss_pred CCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEEC
T ss_conf 5376137788867886420110000000255627887505874443420110069877457741578965988522
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4e-29 Score=209.31 Aligned_cols=116 Identities=20% Similarity=0.422 Sum_probs=52.4
Q ss_pred CCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCEEEEEE------CCCCCCEEEEEEECCCCCEEEEEECCC---EEEEE
Q ss_conf 99845999716996999981-993999987786089995------079888489998079998899984897---09999
Q 001534 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF------MSPPPAATFLAFHPQDNNIIAIGMEDS---SVQIY 909 (1058)
Q Consensus 840 ~~~i~~i~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~------~~~~~~i~~l~~s~~~~~~lasg~~dg---~I~iw 909 (1058)
...+.+++|+||+ ++|+++ |+.|++||+.+++.+..+ .+|...|++++|+| ++++|++|+.|+ .|++|
T Consensus 184 ~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lw 261 (393)
T d1sq9a_ 184 SQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLY 261 (393)
T ss_dssp CCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEE
T ss_pred CCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCC-CCCEEEEECCCCCCCEEEEC
T ss_conf 9867899978999-899993898299986023321100001111124256387700466-53201124289884210010
Q ss_pred ECCCCEEEEEEE-------------CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 931553678881-------------777986899995899989999389919999689874
Q 001534 910 NVRVDEVKTKLK-------------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 957 (1058)
Q Consensus 910 d~~~~~~~~~l~-------------~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~ 957 (1058)
|+.+++++..+. +|.+.|++++|+||+++|+|++.|++|++||+++++
T Consensus 262 d~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~ 322 (393)
T d1sq9a_ 262 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 322 (393)
T ss_dssp ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred CCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCCCC
T ss_conf 3532134443115666643102320235866600138988806987799989999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=3.5e-29 Score=209.66 Aligned_cols=56 Identities=32% Similarity=0.570 Sum_probs=20.1
Q ss_pred EEEEEECCCEEEEEECCC-CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 899984897099999315-536788817779868999958999899993899199996
Q 001534 896 IIAIGMEDSSVQIYNVRV-DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1058)
Q Consensus 896 ~lasg~~dg~I~iwd~~~-~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd 952 (1058)
++++|+.|++|++|++.+ .+.+..+.+|...|++++|+|++ .+++++.|+.|++|+
T Consensus 229 ~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 229 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN 285 (287)
T ss_dssp EEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred EEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEE
T ss_conf 027664999599988899975899927878985899998999-899997999299999
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=3.2e-27 Score=196.31 Aligned_cols=228 Identities=21% Similarity=0.319 Sum_probs=91.2
Q ss_pred CCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf 89973699981599729999927882999983676533457512101333453210101367886738999889999899
Q 001534 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~la 424 (1058)
|...|+|++| |++ +|++|+.||.|+|||+.+++.+.. +.+|.+.|++++| ++++|+
T Consensus 14 ~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~v~~--~~~~l~ 69 (293)
T d1p22a2 14 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVII 69 (293)
T ss_dssp SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEEE
T ss_pred CCCCEEEEEE--CCC-EEEEEECCCEEEEEECCCCCEEEE-------------------EECCCCCEEEEEC--CCCEEE
T ss_conf 9998899987--699-999992899399999999919999-------------------9267787763423--630021
Q ss_pred EEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCE---EEEEECCCCCEE
Q ss_conf 99699959999805998200014530576786789994499936999982899399998578814---687408889857
Q 001534 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVY 501 (1058)
Q Consensus 425 ~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~l~~~~~~v~ 501 (1058)
+|+.|+.|++|++..+.... ....+.. ....+.+... .++++..++.+.+|+...... ...+..|...+.
T Consensus 70 s~s~D~~i~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 142 (293)
T d1p22a2 70 TGSSDSTVRVWDVNTGEMLN---TLIHHCE--AVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 142 (293)
T ss_dssp EEETTSCEEEEESSSCCEEE---EECCCCS--CEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCC---CCCCCCC--CCCCCCCCCC--CEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 00111011000002464100---1111110--0001111110--000013566306861344544421210001135431
Q ss_pred EEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEE
Q ss_conf 99730468932999990799099996788981479508999479999868999799970287898609996479881467
Q 001534 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1058)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 581 (1058)
...+.+ ..+++++.|+.+++||..+.+....+..+...+..+.++ +..+++++. |+.|++||+++...+.
T Consensus 143 ~~~~~~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~~~~~~~ 212 (293)
T d1p22a2 143 VVDFDD----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIECGACLR 212 (293)
T ss_dssp EEEEET----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETTTCCEEE
T ss_pred CCEECC----CCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCC--CCEEEEECC----CCEEEEEECCCCEEEE
T ss_conf 100000----220110699860410078883889971554453221689--875887658----9989998665561466
Q ss_pred EECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 64177887636999858999999983899099997
Q 001534 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1058)
Q Consensus 582 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 616 (1058)
.+.++.. .+.. +.+++.++++++.||.|++||
T Consensus 213 ~~~~~~~-~v~~--~~~~~~~l~sg~~dg~i~iwd 244 (293)
T d1p22a2 213 VLEGHEE-LVRC--IRFDNKRIVSGAYDGKIKVWD 244 (293)
T ss_dssp EECCCSS-CEEE--EECCSSEEEEEETTSCEEEEE
T ss_pred EECCCCE-EEEE--CCCCCEEEEEECCCCEEEEEE
T ss_conf 5214310-0000--145410799986799799998
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=1e-28 Score=206.51 Aligned_cols=59 Identities=12% Similarity=0.285 Sum_probs=27.4
Q ss_pred CCCEEEEEE-CCEEEEEECCC-CEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 996999981-99399998778-60899950798884899980799988999848970999993
Q 001534 851 NDSYVMSAS-GGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV 911 (1058)
Q Consensus 851 d~~~la~~s-dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~ 911 (1058)
++.++++++ |+.|++|++.+ .+.+..+.+|...|++++|+| ++ .+++++.|+.|++|++
T Consensus 226 ~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 226 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp SCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECC-CC-EEEEEECCCEEEEEEE
T ss_conf 8870276649995999888999758999278789858999989-99-8999979992999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=1.7e-29 Score=211.81 Aligned_cols=218 Identities=12% Similarity=0.018 Sum_probs=131.2
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEE
Q ss_conf 13678867389998899998999969995999980599820001453057678678999449993699998289939999
Q 001534 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1058)
Q Consensus 403 ~~~~h~~~v~~i~~spd~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iw 482 (1058)
+..+|+..|++++|+|++++||+|+.|++|++||+..+..........+|..+|.+++|+|++.. ++++|+.|+.|++|
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred CCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCC-EEEECCCCCCEEEE
T ss_conf 68899897888999589999999979992999975699863689885589998899999589997-89981265311454
Q ss_pred ECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 85788146874088898579973046893299999079909999678898147950899947999986899979997028
Q 001534 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1058)
Q Consensus 483 d~~~~~~~~~l~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~ 562 (1058)
++..+........+........+.. .+...+++++.++.+++||++.........
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~------------------------ 139 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRICK-YGDDKLIAASWDGLIEVIDPRNYGDGVIAV------------------------ 139 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEE-ETTTEEEEEETTSEEEEECHHHHTTBCEEE------------------------
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEEECCCCCCCEEEE------------------------
T ss_conf 2044320000011111111111111-111111110122211102023444330230------------------------
Q ss_pred CCCCCEEEEEECCCCCEEEEECCC-CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC-CCCCCCCCEEEE
Q ss_conf 789860999647988146764177-887636999858999999983899099997899914899916-899998146999
Q 001534 563 KEGESHLVEWNESEGAIKRTYSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA-DGGLPASPRLRF 640 (1058)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~ 640 (1058)
. ....+ .........+.+.+..+++++.|+.+++|++........... ........+..+
T Consensus 140 ---------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (342)
T d1yfqa_ 140 ---------K---------NLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL 201 (342)
T ss_dssp ---------E---------ESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE
T ss_pred ---------C---------CCCCCCCCCEEEEEEEECCCCCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEE
T ss_conf ---------0---------0243001200000100016870246517984788760567634111210254221014676
Q ss_pred E-CCCCEEEEEECCCCEEEEECCCC
Q ss_conf 0-79999999978993999997897
Q 001534 641 N-KEGSLLAVTTSDNGIKILANSDG 664 (1058)
Q Consensus 641 s-~~~~~l~~~~~dg~i~iw~~~~~ 664 (1058)
. .++..+++++.||.+.+|+....
T Consensus 202 ~~~~~~~~~~~s~dg~~~v~~~~~~ 226 (342)
T d1yfqa_ 202 LPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp CSGGGCEEEEEETTSEEEEEECCTT
T ss_pred ECCCCCEEEEECCCCEEEEEEECCC
T ss_conf 3699987886548995999980598
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=3.6e-28 Score=202.83 Aligned_cols=173 Identities=12% Similarity=0.103 Sum_probs=72.8
Q ss_pred CCCEEEEEECCCCCEEEEEE--CCEEEEEECCCCEEEEEECCC--CCCEEEEEEECCCCCEE--EEEECCCEEEEEECCC
Q ss_conf 99845999716996999981--993999987786089995079--88848999807999889--9984897099999315
Q 001534 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP--PPAATFLAFHPQDNNII--AIGMEDSSVQIYNVRV 913 (1058)
Q Consensus 840 ~~~i~~i~~s~d~~~la~~s--dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~~l--asg~~dg~I~iwd~~~ 913 (1058)
...+..++++|++++++++. ++.+.+++..+++........ ........+.......+ +....|+.+.+|+...
T Consensus 206 ~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~ 285 (426)
T d1hzua2 206 APFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP 285 (426)
T ss_dssp CSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCT
T ss_pred CCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCC
T ss_conf 77537613778886788642011000000025562788750587444342011006987745774157896598852256
Q ss_pred -------CEEEEEEECCCCCEEEEEECCCCCEEEE-------EECCCCEEEEECCCCCCCCCEEE-ECCCCCCCCCCCEE
Q ss_conf -------5367888177798689999589998999-------93899199996898740010243-25789899997803
Q 001534 914 -------DEVKTKLKGHQNRITGLAFSPTLNALVS-------SGADAQLCMWSIDKWEKLKSRFI-QAPAGRQSPLVGET 978 (1058)
Q Consensus 914 -------~~~~~~l~~h~~~v~~l~~spd~~~l~s-------~s~D~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~v~ 978 (1058)
++....+.+|...+..++|+||+++|++ ++.|++|++||+.+++......- ....++..+...|.
T Consensus 286 ~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~ 365 (426)
T d1hzua2 286 KNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVV 365 (426)
T ss_dssp TTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEE
T ss_pred CCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCCEE
T ss_conf 65203302586898668876367874899861888506798802288799998987876708950211025677885189
Q ss_pred EEEECCCCCEEEEE------ECCEEEEEEC-CCCEEEEEEE
Q ss_conf 89996899699999------4991999918-9970158841
Q 001534 979 KVQFHNDQTHLLVV------HESQISVYDS-KLECSRSVSF 1012 (1058)
Q Consensus 979 ~~~fs~d~~~l~~~------~d~~i~iwd~-~~~~~~~~~~ 1012 (1058)
+++|||||++++++ .++.|+|||. +++....+..
T Consensus 366 ~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~ 406 (426)
T d1hzua2 366 QPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 406 (426)
T ss_dssp EEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECC
T ss_pred EEEECCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEECC
T ss_conf 87999999999999724888898299999998738999878
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.97 E-value=5.7e-28 Score=201.46 Aligned_cols=360 Identities=9% Similarity=0.015 Sum_probs=200.9
Q ss_pred CEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEE--EEEE---C
Q ss_conf 9899996999599998059982000145305767867899944999369999828993999985788146--8740---8
Q 001534 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ--YTFE---G 495 (1058)
Q Consensus 421 ~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~l~---~ 495 (1058)
-++++.+.++.|.+||..+++.+. .+..+ ..+..++|+|||+ ++++++.|+.+.+||+.+++.. ..+. +
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~---~~~~g-~~~~~v~fSpDG~--~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~ 106 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKT---VLDTG-YAVHISRLSASGR--YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE 106 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEE---EEECS-SCEEEEEECTTSC--EEEEEETTSEEEEEETTSSSCCEEEEEECCSE
T ss_pred EEEEEECCCCEEEEEECCCCCEEE---EEECC-CCEEEEEECCCCC--EEEEECCCCCEEEEEEECCCCEEEEEEECCCC
T ss_conf 899997699979999899983999---97379-9713799889999--99998289997899810898128899844889
Q ss_pred CCCCEEEEEECCCCCCCEE-EEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEC
Q ss_conf 8898579973046893299-999079909999678898147950899947999986899979997028789860999647
Q 001534 496 HEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1058)
Q Consensus 496 ~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~ 574 (1058)
|.+.+.+..|+ +||+++ ++++.++.+++||..+++....+..+...+....+
T Consensus 107 ~~~~~~s~~~S--pDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~------------------------- 159 (432)
T d1qksa2 107 ARSIETSKMEG--WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY------------------------- 159 (432)
T ss_dssp EEEEEECCSTT--CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE-------------------------
T ss_pred CCCEEEECCCC--CCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEEC-------------------------
T ss_conf 87769843218--888889998178982799907655422540247764352201-------------------------
Q ss_pred CCCCEEEEECCCCCCCEEEEEECCCCCEEEE-EECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEC-
Q ss_conf 9881467641778876369998589999999-83899099997899914899916899998146999079999999978-
Q 001534 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS- 652 (1058)
Q Consensus 575 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 652 (1058)
........+.+++++..++. ...++.+.+|+..+.+.........+ .....++|+|+|+++++++.
T Consensus 160 -----------~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g-~~~~~~~~spdg~~~~va~~~ 227 (432)
T d1qksa2 160 -----------HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANA 227 (432)
T ss_dssp -----------ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGG
T ss_pred -----------CCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCEEEEECCC-CCCCCCEECCCCCEEEEECCC
T ss_conf -----------68885058998789998999981688299998437875227998336-754265388988799995166
Q ss_pred CCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99399999789740010025873344579999989997533445887654322479889999999984345457788766
Q 001534 653 DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSR 732 (1058)
Q Consensus 653 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1058)
++.+.+++..++ +....+......
T Consensus 228 ~~~v~v~d~~~~-~~~~~~~~g~~~------------------------------------------------------- 251 (432)
T d1qksa2 228 RNKLVVIDTKEG-KLVAIEDTGGQT------------------------------------------------------- 251 (432)
T ss_dssp GTEEEEEETTTT-EEEEEEECSSSS-------------------------------------------------------
T ss_pred CCEEEEEECCCC-EEEEEECCCCCC-------------------------------------------------------
T ss_conf 636777614452-688872148622-------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCCCCCCC
Q ss_conf 66776543334455322135776786630388638975767659999916874588831-25628998825678798874
Q 001534 733 LVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALA-SNAVHKLWKWQRTERNPSGK 811 (1058)
Q Consensus 733 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~ 811 (1058)
.+........+...+....... .++.+.+|.....
T Consensus 252 -------------------------------------~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~------- 287 (432)
T d1qksa2 252 -------------------------------------PHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE------- 287 (432)
T ss_dssp -------------------------------------BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT-------
T ss_pred -------------------------------------CCCCCCCCEECCCCCCEECCCCCCCCEEEECCCCCC-------
T ss_conf -------------------------------------456766410148988310213568835876245665-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEEEE
Q ss_conf 223456500379998731146688999999845999716996999981-9939999877860899950798884899980
Q 001534 812 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFH 890 (1058)
Q Consensus 812 ~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~i~~i~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 890 (1058)
. ... | ...+....+++++..+++++ ++..++|...+.. .|......+++
T Consensus 288 ---------------~-----~~~--~-~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v- 337 (432)
T d1qksa2 288 ---------------G-----HPD--N-AWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV- 337 (432)
T ss_dssp ---------------T-----CTT--T-BTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-
T ss_pred ---------------C-----CCC--C-CCEEEEEEECCCCCEEEEEECCCCCCEEECCCCC------CCCCEEEEEEE-
T ss_conf ---------------5-----546--5-6577799886899768887268864102112678------88770359999-
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE-----CCCCEEEEECCCCCCC
Q ss_conf 79998899984897099999315536788817779868999958999899993-----8991999968987400
Q 001534 891 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG-----ADAQLCMWSIDKWEKL 959 (1058)
Q Consensus 891 ~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s-----~D~~i~iwd~~~~~~~ 959 (1058)
| |++.+++++.|+.+++|++.++.. +..|...+.+++|||||++++... .++.|.|||..+++..
T Consensus 338 p-Dg~~la~~s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~ 407 (432)
T d1qksa2 338 F-DIKAMTGDGSDPEFKTLPIAEWAG---ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 407 (432)
T ss_dssp E-EGGGCCCSSSCCCEEEECHHHHHT---CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred E-ECHHHCCCCCCCCEEECCCCCCCC---CCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEEE
T ss_conf 9-624610455678448633434444---578998689767989999999997048888886899999995588
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=9.7e-29 Score=206.70 Aligned_cols=290 Identities=8% Similarity=0.061 Sum_probs=154.1
Q ss_pred EEEEC-CCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 68602-89973699981599729999927882999983676533457512101333453210101367886738999889
Q 001534 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1058)
Q Consensus 340 ~~~~~-h~~~V~~~~fspdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp 418 (1058)
+...+ |.+.|++++|||+++ +|++|+.||+|+|||+.++...... ....+|..+|.+++|+|
T Consensus 4 v~~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~~----------------~~~~~h~~~V~~v~f~~ 66 (342)
T d1yfqa_ 4 VQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFID 66 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEEE
T ss_pred EECCCCCCCCEEEEEEECCCC-EEEEEECCCEEEEEECCCCCCCEEE----------------EEECCCCCCEEEEEEEC
T ss_conf 976889989788899958999-9999979992999975699863689----------------88558999889999958
Q ss_pred CC-CEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEE----EE
Q ss_conf 99-98999969995999980599820001453057678678999449993699998289939999857881468----74
Q 001534 419 DG-LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY----TF 493 (1058)
Q Consensus 419 d~-~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----~l 493 (1058)
++ .+|++|+.|+.|++|+.......... ...+........+.++.. .+++++.++.+++||+..+.... ..
T Consensus 67 ~~~~~l~sg~~d~~v~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~~~~ 142 (342)
T d1yfqa_ 67 NTDLQIYVGTVQGEILKVDLIGSPSFQAL--TNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAVKNL 142 (342)
T ss_dssp SSSEEEEEEETTSCEEEECSSSSSSEEEC--BSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred CCCCEEEECCCCCCEEEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCEEEECCC
T ss_conf 99978998126531145420443200000--111111111111111111--11110122211102023444330230002
Q ss_pred ECCC--CCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEE---EECCCCCCEEEEEEC-CCCCEEEEEECCCCCCC
Q ss_conf 0888--98579973046893299999079909999678898147---950899947999986-89997999702878986
Q 001534 494 EGHE--APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYS-ADGTRLFSCGTSKEGES 567 (1058)
Q Consensus 494 ~~~~--~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~i~~s-~~~~~l~~~~~~~~~~~ 567 (1058)
..+. .......+.+ .+..+++++.|+.+++|++....... ..........+..+. .++..+++++. ++
T Consensus 143 ~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----dg 216 (342)
T d1yfqa_ 143 NSNNTKVKNKIFTMDT--NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----DG 216 (342)
T ss_dssp CSSSSSSCCCEEEEEE--CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----TS
T ss_pred CCCCCCCEEEEEEEEC--CCCCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECC----CC
T ss_conf 4300120000010001--68702465179847887605676341112102542210146763699987886548----99
Q ss_pred EEEEEECCCCCEEE------E---------ECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC
Q ss_conf 09996479881467------6---------41778876369998589999999838990999978999148999168999
Q 001534 568 HLVEWNESEGAIKR------T---------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (1058)
Q Consensus 568 ~i~iwd~~~~~~~~------~---------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1058)
.+.+|+........ . ...+.. .+.+++|+|++++|++|+.||.|++||+.+++.+..+..+.
T Consensus 217 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~-- 293 (342)
T d1yfqa_ 217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY-PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-- 293 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCC-CEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS--
T ss_pred EEEEEEECCCCCEEECCCCCEEEEEEECCCCCCCCC-CCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCC--
T ss_conf 599998059864011123512565553147776235-43159966984479998799989999999894988705899--
Q ss_pred CCCCEEEEECCCCEEEEEECCCCEEEEE
Q ss_conf 9814699907999999997899399999
Q 001534 633 PASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1058)
Q Consensus 633 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 660 (1058)
....++|+|+++.+++++.|+.+++|.
T Consensus 294 -~~~~~~~s~~~~~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 294 -EDSVVKIACSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp -SSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred -CCEEEEEEECCCEEEEEECCCCEEEEE
T ss_conf -987999994799999999199278830
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.2e-27 Score=194.40 Aligned_cols=234 Identities=16% Similarity=0.277 Sum_probs=144.1
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEE
Q ss_conf 36788673899988999989999699959999805998200014530576786789994499936999982899399998
Q 001534 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1058)
Q Consensus 404 ~~~h~~~v~~i~~spd~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd 483 (1058)
..+|...|+|++| |+++||+|+.||+|++||+.+++.+. .+.+|...|++++| +++ +|++++.|+.|++|+
T Consensus 11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD 81 (293)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred CCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEE---EEECCCCCEEEEEC--CCC--EEECCCCCCCCCCCC
T ss_conf 2899998899987--69999999289939999999991999---99267787763423--630--021001110110000
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEE---EECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 5788146874088898579973046893299999079909999678898147---9508999479999868999799970
Q 001534 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCG 560 (1058)
Q Consensus 484 ~~~~~~~~~l~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~i~~s~~~~~l~~~~ 560 (1058)
+..+........+......... ....++++..++.+.+|+........ ....+...+....+.+ ..+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s 155 (293)
T d1p22a2 82 VNTGEMLNTLIHHCEAVLHLRF----NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS 155 (293)
T ss_dssp SSSCCEEEEECCCCSCEEEEEC----CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCC----CCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECC--CCCCCCC
T ss_conf 0246410011111100001111----110000013566306861344544421210001135431100000--2201106
Q ss_pred CCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf 28789860999647988146764177887636999858999999983899099997899914899916899998146999
Q 001534 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1058)
Q Consensus 561 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1058)
.++.+++||.++++.+..+.++.. .+..+.++ +..+++++.|+.|++||+.+...+.....+.. .+ ..+
T Consensus 156 ----~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v--~~~ 224 (293)
T d1p22a2 156 ----GDRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LV--RCI 224 (293)
T ss_dssp ----TTSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CE--EEE
T ss_pred ----CCCCEEEECCCCCCEEEEECCCCC-CCCCCCCC--CCEEEEECCCCEEEEEECCCCEEEEEECCCCE--EE--EEC
T ss_conf ----998604100788838899715544-53221689--87588765899899986655614665214310--00--001
Q ss_pred ECCCCEEEEEECCCCEEEEECCC
Q ss_conf 07999999997899399999789
Q 001534 641 NKEGSLLAVTTSDNGIKILANSD 663 (1058)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~ 663 (1058)
++++.++++++.||.|++|++..
T Consensus 225 ~~~~~~l~sg~~dg~i~iwd~~~ 247 (293)
T d1p22a2 225 RFDNKRIVSGAYDGKIKVWDLVA 247 (293)
T ss_dssp ECCSSEEEEEETTSCEEEEEHHH
T ss_pred CCCCEEEEEECCCCEEEEEECCC
T ss_conf 45410799986799799998888
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=9.2e-30 Score=213.66 Aligned_cols=202 Identities=13% Similarity=0.071 Sum_probs=134.6
Q ss_pred EEEEEEEC-CCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 36999815-99729999927882999983676533457512101333453210101367886738999889999899996
Q 001534 349 VMSMDFHP-QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1058)
Q Consensus 349 V~~~~fsp-dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~la~~~ 427 (1058)
+..-.||| ||+ ++|+++ +|.|.+|++.++...+ .+|...|.+++|+|||++|++++
T Consensus 5 ~~~~~fSP~dG~-~~a~~~-~g~v~v~d~~~~~~~~---------------------~~~~~~v~~~~~spDg~~l~~~~ 61 (360)
T d1k32a3 5 KFAEDFSPLDGD-LIAFVS-RGQAFIQDVSGTYVLK---------------------VPEPLRIRYVRRGGDTKVAFIHG 61 (360)
T ss_dssp GGEEEEEECGGG-CEEEEE-TTEEEEECTTSSBEEE---------------------CSCCSCEEEEEECSSSEEEEEEE
T ss_pred HHCCCCCCCCCC-EEEEEE-CCEEEEEECCCCCEEE---------------------CCCCCCEEEEEECCCCCEEEEEE
T ss_conf 100514688999-999998-9969999899994899---------------------16999888899989999999999
Q ss_pred CCC--EEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf 999--599998059982000145305767867899944999369999828993999985788146874088898579973
Q 001534 428 SKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1058)
Q Consensus 428 ~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~i~~ 505 (1058)
.+. .|++||..++... .+..|...+.+++|+|+++ ++++++.++.+++|++.+++....+..+...+.+++|
T Consensus 62 ~~~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (360)
T d1k32a3 62 TREGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI 135 (360)
T ss_dssp ETTEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE
T ss_pred CCCCCEEEEEECCCCCEE----EEECCCCEEEEEEECCCCC--CCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHH
T ss_conf 289989999989999488----7508971277412114543--2100011111000001222100000013552023012
Q ss_pred CCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECC
Q ss_conf 04689329999907990999967889814795089994799998689997999702878986099964798814676417
Q 001534 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1058)
Q Consensus 506 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 585 (1058)
+|+ |++++.+..+.... . ....++.+++|+..+++......
T Consensus 136 spd--g~~la~~~~~~~~~--------------------------------~----~~~~~~~~~v~d~~~~~~~~~~~- 176 (360)
T d1k32a3 136 SDN--SRFIAYGFPLKHGE--------------------------------T----DGYVMQAIHVYDMEGRKIFAATT- 176 (360)
T ss_dssp CTT--SCEEEEEEEECSST--------------------------------T----CSCCEEEEEEEETTTTEEEECSC-
T ss_pred CCC--EEEEEEECCCCCCC--------------------------------E----EECCCCCEEEECCCCCCEEEECC-
T ss_conf 132--25665212331211--------------------------------0----00256542663045571353035-
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 7887636999858999999983899099997899
Q 001534 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1058)
Q Consensus 586 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 619 (1058)
+.. ....+.|+|+++.|++++.++.+.+|+...
T Consensus 177 ~~~-~~~~~~~spdg~~l~~~s~~~~~~~~d~~~ 209 (360)
T d1k32a3 177 ENS-HDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209 (360)
T ss_dssp SSS-BEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred CCC-CCCCCCCCCCCCEEEEEECCCCEECCCCCC
T ss_conf 432-211001257799999995998557533354
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=8.6e-29 Score=207.06 Aligned_cols=201 Identities=12% Similarity=0.045 Sum_probs=144.8
Q ss_pred EEEECC-CCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCC--CCEEEEECCCCCE
Q ss_conf 999889-9998999969995999980599820001453057678678999449993699998289--9399998578814
Q 001534 413 RCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRK 489 (1058)
Q Consensus 413 ~i~~sp-d~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d--~~i~iwd~~~~~~ 489 (1058)
.-.||| ||+++|+++ +|.|++|++.++...+ + +|...|.+++|+|||+ .|++++.+ ..|++||+.+++.
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~----~-~~~~~v~~~~~spDg~--~l~~~~~~~g~~v~v~d~~~~~~ 78 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----V-PEPLRIRYVRRGGDTK--VAFIHGTREGDFLGIYDYRTGKA 78 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----C-SCCSCEEEEEECSSSE--EEEEEEETTEEEEEEEETTTCCE
T ss_pred CCCCCCCCCCEEEEEE-CCEEEEEECCCCCEEE----C-CCCCCEEEEEECCCCC--EEEEEECCCCCEEEEEECCCCCE
T ss_conf 0514688999999998-9969999899994899----1-6999888899989999--99999928998999998999948
Q ss_pred EEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEE
Q ss_conf 68740888985799730468932999990799099996788981479508999479999868999799970287898609
Q 001534 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1058)
Q Consensus 490 ~~~l~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~~~~~~~i 569 (1058)
..+..|...+.+++|+| +++++++++.++.+++|++........+..+...+.+++|+|+|++++.+..+..
T Consensus 79 -~~~~~~~~~v~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~----- 150 (360)
T d1k32a3 79 -EKFEENLGNVFAMGVDR--NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKH----- 150 (360)
T ss_dssp -EECCCCCCSEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECS-----
T ss_pred -EEEECCCCEEEEEEECC--CCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCC-----
T ss_conf -87508971277412114--5432100011111000001222100000013552023012132256652123312-----
Q ss_pred EEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCEEEE
Q ss_conf 99647988146764177887636999858999999983899099997899914899916899998146999079999999
Q 001534 570 VEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAV 649 (1058)
Q Consensus 570 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 649 (1058)
. .+.+..++.+++|++.+++....... ...+..+.|+|+|+.|++
T Consensus 151 -------~-------------------------~~~~~~~~~~~v~d~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~ 195 (360)
T d1k32a3 151 -------G-------------------------ETDGYVMQAIHVYDMEGRKIFAATTE---NSHDYAPAFDADSKNLYY 195 (360)
T ss_dssp -------S-------------------------TTCSCCEEEEEEEETTTTEEEECSCS---SSBEEEEEECTTSCEEEE
T ss_pred -------C-------------------------CEEECCCCCEEEECCCCCCEEEECCC---CCCCCCCCCCCCCCEEEE
T ss_conf -------1-------------------------10002565426630455713530354---322110012577999999
Q ss_pred EECCCCEEEEECCCC
Q ss_conf 978993999997897
Q 001534 650 TTSDNGIKILANSDG 664 (1058)
Q Consensus 650 ~~~dg~i~iw~~~~~ 664 (1058)
++.++.+.+|+....
T Consensus 196 ~s~~~~~~~~d~~~~ 210 (360)
T d1k32a3 196 LSYRSLDPSPDRVVL 210 (360)
T ss_dssp EESCCCCCEECSSSS
T ss_pred EECCCCEECCCCCCC
T ss_conf 959985575333544
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.95 E-value=2.3e-22 Score=163.34 Aligned_cols=275 Identities=10% Similarity=0.073 Sum_probs=180.9
Q ss_pred EEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE-EEECCCEEEEEEEC
Q ss_conf 29999927882999983676533457512101333453210101367886738999889999899-99699959999805
Q 001534 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG-VAFSKHIVHLYTYN 438 (1058)
Q Consensus 360 ~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~la-~~~~d~~i~iwd~~ 438 (1058)
++.++++.|+.|.+||+.+++.+... . ....+..++|+|||++|+ +++.++.|.+||+.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~i-------------------~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~ 62 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTATI-------------------P-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEE-------------------E-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEE-------------------E-CCCCCEEEEEECCCCEEEEEECCCCEEEEEECC
T ss_conf 99999789998999999999599999-------------------8-899836999928989999997899989999999
Q ss_pred CCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEE
Q ss_conf 99820001453057678678999449993699998289939999857881468740888985799730468932999990
Q 001534 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (1058)
Q Consensus 439 ~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~i~~~~~~~~~~l~s~~ 518 (1058)
+++.+. .+..+. .+..+.|++++.. +++++..++.+.+|+..+++....+..+ ....++++++++. ..++++.
T Consensus 63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~-~~~~~~~ 135 (301)
T d1l0qa2 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGK-KLYVTNN 135 (301)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSS-EEEEEET
T ss_pred CCCEEE---EEECCC-CCCCCCCCCCCCC-CCCCCCCCCEEEECCCCCCEEEEECCCC-CCCEEEEEECCCC-EEEEEEC
T ss_conf 894103---200024-6431100011111-1111111100110012430243202444-4423787605897-1554201
Q ss_pred CCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECC
Q ss_conf 79909999678898147950899947999986899979997028789860999647988146764177887636999858
Q 001534 519 IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1058)
Q Consensus 519 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 598 (1058)
.++.+.+|+..+......+..+ .....+.+++++..++++.. ....+.+|+.............. ....+++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 209 (301)
T d1l0qa2 136 GDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVNP 209 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEECT
T ss_pred CCCCEEEEECCCCCEEEECCCC-CCCEEEEEECCCCCEEEECC---CCCCCCCCCCCCEEEEECCCCCC--CCCEEECCC
T ss_conf 1110011000146303531567-88428886046540131012---11111111111000111013357--750311011
Q ss_pred CCCEEEEEE---CCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCEEE-EEECCCCEEEEECCCCCEEEECC
Q ss_conf 999999983---89909999789991489991689999814699907999999-99789939999978974001002
Q 001534 599 TRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDGVRLLRML 671 (1058)
Q Consensus 599 ~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~ 671 (1058)
++..++.++ .++.|++||..+++....+.... .+.+++|+|||++++ +++.++.|.+||+.++ +++.++
T Consensus 210 ~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~-~~~~~~ 282 (301)
T d1l0qa2 210 EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN-TITATM 282 (301)
T ss_dssp TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEE
T ss_pred CCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCC---CEEEEEEECCCCEEEEEECCCCEEEEEECCCC-EEEEEE
T ss_conf 11011110021000023236569981999984899---87799991898999999899996999999999-599999
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.94 E-value=4.5e-22 Score=161.31 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=9.4
Q ss_pred EEEEECCCCCEE-EEEECCCCEEEEECCCC
Q ss_conf 899995899989-99938991999968987
Q 001534 928 TGLAFSPTLNAL-VSSGADAQLCMWSIDKW 956 (1058)
Q Consensus 928 ~~l~~spd~~~l-~s~s~D~~i~iwd~~~~ 956 (1058)
.+++|+|||++| ++++.|+.|++||++++
T Consensus 247 ~~va~spdg~~l~va~~~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 247 AGIAVTPDGKKVYVALSFCNTVSVIDTATN 276 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEECCCC
T ss_conf 799991898999999899996999999999
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=4.2e-22 Score=161.52 Aligned_cols=98 Identities=9% Similarity=0.021 Sum_probs=65.3
Q ss_pred CCEEEEEECCCCEEEEE-ECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCE
Q ss_conf 99399998778608999-50798884899980799988999848970999993155367888177798689999589998
Q 001534 860 GGKVSLFNMMTFKVMTM-FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNA 938 (1058)
Q Consensus 860 dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~ 938 (1058)
++.+.+|+..++..... +..+...+..+++++ ++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+|||++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~ 293 (337)
T d1pbyb_ 218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGST 293 (337)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCE
T ss_pred CCCEEEEECCCCCEEEEEECCCCCCEEEEEECC-CCEEEEEC--CCCEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCE
T ss_conf 761799986888588898328875058887426-61399973--5528999898896999974-8998899999789999
Q ss_pred EEEEECCCCEEEEECCCCCCCCC
Q ss_conf 99993899199996898740010
Q 001534 939 LVSSGADAQLCMWSIDKWEKLKS 961 (1058)
Q Consensus 939 l~s~s~D~~i~iwd~~~~~~~~~ 961 (1058)
|++++.|+.|++||..+++....
T Consensus 294 l~v~~~~~~i~v~D~~t~~~v~~ 316 (337)
T d1pbyb_ 294 VWLGGALGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp EEEESBSSEEEEEETTTCCEEEE
T ss_pred EEEEECCCCEEEEECCCCCEEEE
T ss_conf 99994999299999998769899
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.93 E-value=3.8e-22 Score=161.82 Aligned_cols=78 Identities=10% Similarity=-0.034 Sum_probs=54.4
Q ss_pred EEECCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEE-CCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEE
Q ss_conf 9988999989999699959999805998200014530-576786789994499936999982899399998578814687
Q 001534 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1058)
Q Consensus 414 i~~spd~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1058)
++|+++++++++++.++.|.+||+.+++.+. ++. .+...+.+++|+|||+. +++++..++.|.+||+.+++.+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~---t~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~ 77 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFH 77 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCEEE---EEECCCCCCCCEEEECCCCCE-EEEEECCCCCEEEEECCCCEEEEE
T ss_conf 5588999699998699979999999998999---999489997045999789899-999978999399996756713123
Q ss_pred EEC
Q ss_conf 408
Q 001534 493 FEG 495 (1058)
Q Consensus 493 l~~ 495 (1058)
+..
T Consensus 78 ~~~ 80 (346)
T d1jmxb_ 78 ANL 80 (346)
T ss_dssp EES
T ss_pred ECC
T ss_conf 103
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.93 E-value=1.4e-19 Score=144.37 Aligned_cols=332 Identities=11% Similarity=0.001 Sum_probs=198.9
Q ss_pred CCCCCCEEEEEECCCCCEEEEE-----ECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEE------
Q ss_conf 6788673899988999989999-----69995999980599820001453057678678999449993699998------
Q 001534 405 NDAAISVNRCVWGPDGLMLGVA-----FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC------ 473 (1058)
Q Consensus 405 ~~h~~~v~~i~~spd~~~la~~-----~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~------ 473 (1058)
..+..++.+++++|||+.+++. +..+.+.+||..+++.+. .+..+..+ .++|+|||+ +++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~~--~~a~SpDG~--~l~va~~~~~~ 89 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFLP--NPVAAHSGS--EFALASTSFSR 89 (373)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEE---EEECCCCC--CEEECCCCC--EEEEEEECCCC
T ss_conf 567898656301899978999734225787659999899997999---99579886--079868999--89999605775
Q ss_pred ----CCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEE
Q ss_conf ----2899399998578814687408889857997304689329999907990999967889814795089994799998
Q 001534 474 ----GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAY 549 (1058)
Q Consensus 474 ----~~d~~i~iwd~~~~~~~~~l~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 549 (1058)
..++.|.+||+.+++.+..+..+......+...+ ..+.|
T Consensus 90 ~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~ 132 (373)
T d2madh_ 90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS-------------------------------------WMNAN 132 (373)
T ss_pred CCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCC-------------------------------------CCEEE
T ss_conf 32124531899997778938889726885136851689-------------------------------------70899
Q ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCCEEEEEEC
Q ss_conf 689997999702878986099964798814676417788763699985899999-9983899099997899914899916
Q 001534 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMDNMNMLTTVDA 628 (1058)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1058)
+++++.++....+ .+..+.+|+....+...... ...++.++|+++.+ ++.+.|+.+.+|+...+........
T Consensus 133 s~dg~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~ 205 (373)
T d2madh_ 133 TPNNADLLFFQFA--AGPAVGLVVQGGSSDDQLLS-----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVG 205 (373)
T ss_pred EECCCCEEEEEEC--CCCCEEEEECCCCEEEEEEC-----CCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEE
T ss_conf 8589937999986--98746776236872899824-----5206999628991999994799399997477426678863
Q ss_pred CC----CCCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCEEE-ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89----99981469990799999999789939999978974001-00258733445799999899975334458876543
Q 001534 629 DG----GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL-RMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703 (1058)
Q Consensus 629 ~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1058)
.. .........+.+++. ++..+.++.+.+|+...+.... .....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------------------------ 254 (373)
T d2madh_ 206 AMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPIDA------------------------------ 254 (373)
T ss_pred ECCCCCCCCEEEEEEECCCCE-EEEECCCCEEEEEECCCCEEEEEEEECC------------------------------
T ss_conf 003667530434588789942-9992589659999768990789776305------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCC
Q ss_conf 22479889999999984345457788766667765433344553221357767866303886389757676599999168
Q 001534 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 783 (1058)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 783 (1058)
.........+.|.
T Consensus 255 -------------------------------------------------------------------~~~~~~~~~~~~~ 267 (373)
T d2madh_ 255 -------------------------------------------------------------------LSGGRKADTWRPG 267 (373)
T ss_pred -------------------------------------------------------------------CCCCEEEEEECCC
T ss_conf -------------------------------------------------------------------6475786641367
Q ss_pred CCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE-CCE
Q ss_conf 7458883125628998825678798874223456500379998731146688999999845999716996999981-993
Q 001534 784 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGK 862 (1058)
Q Consensus 784 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~i~~i~~s~d~~~la~~s-dg~ 862 (1058)
+...+....++.. ...+..++..++... ++.
T Consensus 268 ~~~~~~~~~d~~~------------------------------------------------~~~~~~~~~~~~~~~~~~~ 299 (373)
T d2madh_ 268 GWQQVAYLKSSDG------------------------------------------------IYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred CCEEEEEECCCCE------------------------------------------------EEEECCCCCEEEEECCCCE
T ss_conf 4133577149975------------------------------------------------9995488824786258986
Q ss_pred EEEEECCCCEEEEEECCCCCCEEEEEEECCCCC--EEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf 999987786089995079888489998079998--8999848970999993155367888177798689999589
Q 001534 863 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN--IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935 (1058)
Q Consensus 863 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~--~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd 935 (1058)
+.+||..+++.+..+. +...+..++|+| ||+ ++++++.|+.|++||+.+++.+..+.++....+.|++.++
T Consensus 300 v~~~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 300 VTSVTGLVGQTSSQIS-LGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred EEEEECCCCCEEEEEC-CCCCEEEEEECC-CCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEECC
T ss_conf 9999899996989866-899825899998-999899999679992999999999899998888989818998468
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=9.2e-22 Score=159.19 Aligned_cols=81 Identities=11% Similarity=0.076 Sum_probs=70.3
Q ss_pred CCCEEEEEECCCCCEEEEEECCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEE
Q ss_conf 99845999716996999981993999987786089995079888489998079998899984897099999315536788
Q 001534 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 919 (1058)
Q Consensus 840 ~~~i~~i~~s~d~~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~ 919 (1058)
......+++++++.+++.+ ++.+++||+.+++.+..+. +...+.+++|+| ||++|++++.|+.|++||..+++.+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~~ 316 (337)
T d1pbyb_ 240 DVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp SSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred CCCEEEEEECCCCEEEEEC-CCCEEEEECCCCCEEEEEC-CCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCCEEEE
T ss_conf 7505888742661399973-5528999898896999974-899889999978-999999994999299999998769899
Q ss_pred EECC
Q ss_conf 8177
Q 001534 920 LKGH 923 (1058)
Q Consensus 920 l~~h 923 (1058)
++..
T Consensus 317 i~~~ 320 (337)
T d1pbyb_ 317 VDLP 320 (337)
T ss_dssp EECG
T ss_pred EECC
T ss_conf 9889
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.92 E-value=7e-22 Score=159.98 Aligned_cols=98 Identities=16% Similarity=0.108 Sum_probs=47.5
Q ss_pred CCEEEEEECCCCEEEEE-ECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCE
Q ss_conf 99399998778608999-50798884899980799988999848970999993155367888177798689999589998
Q 001534 860 GGKVSLFNMMTFKVMTM-FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNA 938 (1058)
Q Consensus 860 dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~ 938 (1058)
+..+.+|+..++..... +..+...+..+.+++ ++..++.... +.|.+||..+++.+..+. +...+.+++|||||++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~ 305 (346)
T d1jmxb_ 229 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP-KDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDK 305 (346)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECS-SCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSC
T ss_pred CCEEEEEECCCCCEEEEEEECCCCEEEEEEEEC-CCCEEEEECC-CEEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCE
T ss_conf 834999977788368787631566068889717-9978999429-838999899993999974-9997789999689999
Q ss_pred EEEEECCCCEEEEECCCCCCCC
Q ss_conf 9999389919999689874001
Q 001534 939 LVSSGADAQLCMWSIDKWEKLK 960 (1058)
Q Consensus 939 l~s~s~D~~i~iwd~~~~~~~~ 960 (1058)
|++++.|+.|++||+.+++.+.
T Consensus 306 l~v~~~d~~v~v~D~~t~~~i~ 327 (346)
T d1jmxb_ 306 LYLGGTFNDLAVFNPDTLEKVK 327 (346)
T ss_dssp EEEESBSSEEEEEETTTTEEEE
T ss_pred EEEEECCCCEEEEECCCCCEEE
T ss_conf 9999489929999996587979
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.92 E-value=7e-19 Score=139.56 Aligned_cols=157 Identities=10% Similarity=-0.014 Sum_probs=78.6
Q ss_pred CCCCEEEEEEECCCCEEEEEE----ECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 899736999815997299999----2788299998367653345751210133345321010136788673899988999
Q 001534 345 QGSNVMSMDFHPQQQTILLVG----TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1058)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~ 420 (1058)
+..++.+++++|||++++++. +..+.|.+||..+++.+.. +..+. ...++|+|||
T Consensus 19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~--~~~~a~SpDG 77 (373)
T d2madh_ 19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGF--LPNPVAAHSG 77 (373)
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEE-------------------EECCC--CCCEEECCCC
T ss_conf 78986563018999789997342257876599998999979999-------------------95798--8607986899
Q ss_pred CEEEEEE----------CCCEEEEEEECCCCCEEEEEEEECCCCC-------EEEEEEECCCCCEEEEEECCCCCEEEEE
Q ss_conf 9899996----------9995999980599820001453057678-------6789994499936999982899399998
Q 001534 421 LMLGVAF----------SKHIVHLYTYNPTGELRQHLEIDAHVGG-------VNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1058)
Q Consensus 421 ~~la~~~----------~d~~i~iwd~~~~~~~~~~~~~~~h~~~-------v~~i~fs~~~~~~~l~s~~~d~~i~iwd 483 (1058)
+++++++ .++.|.+||..+++... .+..+... ...+.|+++++.+++.....++.+.+|+
T Consensus 78 ~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~ 154 (373)
T d2madh_ 78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV 154 (373)
T ss_pred CEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEE---EEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEE
T ss_conf 9899996057753212453189999777893888---9726885136851689708998589937999986987467762
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCC
Q ss_conf 57881468740888985799730468932999990799099996788
Q 001534 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (1058)
Q Consensus 484 ~~~~~~~~~l~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~ 530 (1058)
....+...... ...++.+++++. ..+++.+.|+.+.+|+...
T Consensus 155 ~~~~~~~~~~~----~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~ 196 (373)
T d2madh_ 155 QGGSSDDQLLS----SPTCYHIHPGAP-STFYLLCAQGGLAKTDHAG 196 (373)
T ss_pred CCCCEEEEEEC----CCEEEEEECCCC-CEEEEECCCCEEEEEECCC
T ss_conf 36872899824----520699962899-1999994799399997477
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=5.6e-18 Score=133.40 Aligned_cols=79 Identities=19% Similarity=0.194 Sum_probs=29.1
Q ss_pred CCCCEEEEEECCCCCEEEEEE-CCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEEC-CCCCEEEEEC
Q ss_conf 886738999889999899996-99959999805998200014530576786789994499936999982-8993999985
Q 001534 407 AAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDV 484 (1058)
Q Consensus 407 h~~~v~~i~~spd~~~la~~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~-~d~~i~iwd~ 484 (1058)
|.+.+..++|+|||++|++++ .|+.|.+|++..............+...+..++|+|||+ ++++++ .++.+.+|+.
T Consensus 35 ~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~ 112 (333)
T d1ri6a_ 35 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRL 112 (333)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEECCCCC--EEEECCCCCCCEEEECC
T ss_conf 7998868999589799999977899699999968987079853013699854999959998--87420568883022001
Q ss_pred CCC
Q ss_conf 788
Q 001534 485 VAG 487 (1058)
Q Consensus 485 ~~~ 487 (1058)
...
T Consensus 113 ~~~ 115 (333)
T d1ri6a_ 113 EDG 115 (333)
T ss_dssp ETT
T ss_pred CCC
T ss_conf 110
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=7.8e-18 Score=132.45 Aligned_cols=147 Identities=14% Similarity=0.119 Sum_probs=60.5
Q ss_pred EEEEECCCEEEEEECCCCCCEEE--ECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECC--CCCC
Q ss_conf 99990799099996788981479--5089994799998689997999702878986099964798814676417--7887
Q 001534 514 IFSTAIDGKIKAWLYDYLGSRVD--YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG--FRKR 589 (1058)
Q Consensus 514 l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--~~~~ 589 (1058)
+++++.++.|++|++...+.... ...+.+.+..++|+|||++|++++. .++.|.+|++........+.. ....
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~---~d~~i~~~~i~~~~~~~~~~~~~~~~~ 83 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESALPG 83 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEC---CCCEEEEEEEECCCCCEEEEEECCCCC
T ss_conf 99878999389999839997699999757998868999589799999977---899699999968987079853013699
Q ss_pred CEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEC-CCCEEEEECCC
Q ss_conf 636999858999999983-899099997899914899916899998146999079999999978-99399999789
Q 001534 590 SLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DNGIKILANSD 663 (1058)
Q Consensus 590 ~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~ 663 (1058)
.+..++|+|+|+++++++ .++.+.+|+..............+...+.++.++|++++++.++. +..+.+|+...
T Consensus 84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~ 159 (333)
T d1ri6a_ 84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD 159 (333)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CCEEEEECCCCCEEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECC
T ss_conf 8549999599988742056888302200111000000100377853149886301013102565542056897326
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=1.5e-18 Score=137.24 Aligned_cols=73 Identities=11% Similarity=0.072 Sum_probs=47.5
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCC--EEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf 93999987786089995079888489998079998--8999848970999993155367888177798689999589
Q 001534 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN--IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935 (1058)
Q Consensus 861 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~--~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd 935 (1058)
+.|.+||..+++.+..+. +...+.+++|+| ||+ +++++..|+.|++||+.+++.+..+.++......+.+.++
T Consensus 280 ~~v~v~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 280 RFVVVLDAKTGERLAKFE-MGHEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp EEEEEEETTTCCEEEEEE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred CEEEEEECCCCCEEEEEC-CCCCEEEEEECC-CCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCEEEECCC
T ss_conf 759998678884989966-899877999928-999699999789998999999999899999286979658996999
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=5.8e-19 Score=140.14 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=23.5
Q ss_pred EEEEEECCCCEEEEEEECCCCCEEEEEECCCCC--EEEEEECCCCEEEEECCCCCC
Q ss_conf 099999315536788817779868999958999--899993899199996898740
Q 001534 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN--ALVSSGADAQLCMWSIDKWEK 958 (1058)
Q Consensus 905 ~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~--~l~s~s~D~~i~iwd~~~~~~ 958 (1058)
.|.+||..+++.+..+. +...+.+++|+|||+ ++++++.|+.|++||+.+++.
T Consensus 281 ~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~ 335 (355)
T d2bbkh_ 281 FVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 335 (355)
T ss_dssp EEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred EEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCE
T ss_conf 59998678884989966-89987799992899969999978999899999999989
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.82 E-value=2.8e-16 Score=121.84 Aligned_cols=163 Identities=13% Similarity=0.168 Sum_probs=107.1
Q ss_pred EEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC-
Q ss_conf 6999815997299999278829999836765334575121013334532101013678867389998899998999969-
Q 001534 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS- 428 (1058)
Q Consensus 350 ~~~~fspdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~la~~~~- 428 (1058)
..+.|.+|++ ++. ..++.+.+||+.+++.... +....+..|...|.++.|||||++|+.++.
T Consensus 20 ~~~~W~~d~~-~~~--~~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~ 82 (470)
T d2bgra1 20 YSLRWISDHE-YLY--KQENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNY 82 (470)
T ss_dssp CCCEECSSSE-EEE--ESSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEE
T ss_pred CCCEECCCCE-EEE--ECCCCEEEEECCCCCEEEE--------------ECHHHHHHCCCCCCEEEECCCCCEEEEEECC
T ss_conf 5789689997-999--7599499998899978999--------------7015644316765405998988979999777
Q ss_pred --------CCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCE
Q ss_conf --------995999980599820001453057678678999449993699998289939999857881468740888985
Q 001534 429 --------KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1058)
Q Consensus 429 --------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v 500 (1058)
++.+.+||+.+++. . .+..+...+..+.|||||+ .++... ++.+.+|+..++...+....+...+
T Consensus 83 ~~~~r~s~~~~~~l~d~~~~~~-~---~l~~~~~~~~~~~~SPDG~--~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~ 155 (470)
T d2bgra1 83 VKQWRHSYTASYDIYDLNKRQL-I---TEERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI 155 (470)
T ss_dssp EECSSSCEEEEEEEEETTTTEE-C---CSSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCSCCBTTT
T ss_pred CCEEEECCCCEEEEEECCCCCC-C---CCCCCCCCCCCCCCCCCCC--EEEEEE-CCCCEEEECCCCCEEEEEECCCCCC
T ss_conf 1000104673499998988851-3---1246874231010146764--135751-4641379889994653210147774
Q ss_pred EEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 79973046893299999079909999678898147950899947999986899979997028
Q 001534 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1058)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~ 562 (1058)
...+..| |... ....+....+.|||||++++....+
T Consensus 156 -------------~~~g~~d-----~~~~--------~~~~~~~~~~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 156 -------------IYNGITD-----WVYE--------EEVFSAYSALWWSPNGTFLAYAQFN 191 (470)
T ss_dssp -------------EEESBCC-----HHHH--------HHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred -------------CCCCCCC-----EEEE--------EEECCCCCCCEECCCCCCCCEEEEC
T ss_conf -------------0535432-----0112--------1004776530799998722026863
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.76 E-value=4.9e-15 Score=113.39 Aligned_cols=57 Identities=12% Similarity=0.084 Sum_probs=33.9
Q ss_pred EEEECCCCCEEEEEECCCEEEEEEECCCCCEEEE--EEEECCCCCEEEEEEECCCCCEEEEEE
Q ss_conf 9998899998999969995999980599820001--453057678678999449993699998
Q 001534 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH--LEIDAHVGGVNDIAFAHPNKQLCIVTC 473 (1058)
Q Consensus 413 ~i~~spd~~~la~~~~d~~i~iwd~~~~~~~~~~--~~~~~h~~~v~~i~fs~~~~~~~l~s~ 473 (1058)
.+.|.+|++++.. .++.+.+||+.+++..... ..+..|...|.++.||||++ +|+.+
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~--~i~~~ 79 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ--FILLE 79 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSS--EEEEE
T ss_pred CCEECCCCEEEEE--CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCC--EEEEE
T ss_conf 7896899979997--59949999889997899970156443167654059989889--79999
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=3.3e-15 Score=114.59 Aligned_cols=59 Identities=10% Similarity=0.022 Sum_probs=28.4
Q ss_pred EEEEEECCCCEEEEEECCCCCCEEEEEEECCCCC--EEEEEECCCEEEEEECCCCEEEEEEEC
Q ss_conf 3999987786089995079888489998079998--899984897099999315536788817
Q 001534 862 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN--IIAIGMEDSSVQIYNVRVDEVKTKLKG 922 (1058)
Q Consensus 862 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~--~lasg~~dg~I~iwd~~~~~~~~~l~~ 922 (1058)
.|.+||..+++.+..+. +...+.+++|+| |++ +++++..++.|++||..+++.+..++.
T Consensus 295 ~v~v~D~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~ 355 (368)
T d1mdah_ 295 NTSSVTASVGQTSGPIS-NGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EEEEEESSSCCEEECCE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred EEEEEECCCCCEEEEEC-CCCCEEEEEECC-CCCEEEEEEECCCCEEEEEECCCCCEEEEEEC
T ss_conf 49999899994868955-899651799998-99989999948999699998999979999879
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=3.1e-15 Score=114.78 Aligned_cols=54 Identities=6% Similarity=0.045 Sum_probs=26.1
Q ss_pred EEEEEECCCCEEEEEEECCCCCEEEEEECCCCCE--EEEEECCCCEEEEECCCCCCC
Q ss_conf 0999993155367888177798689999589998--999938991999968987400
Q 001534 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNA--LVSSGADAQLCMWSIDKWEKL 959 (1058)
Q Consensus 905 ~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~--l~s~s~D~~i~iwd~~~~~~~ 959 (1058)
.|.+||..+++.+..+. +...+.+++|||||+. +++...|+.|++||..+++.+
T Consensus 295 ~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~ 350 (368)
T d1mdah_ 295 NTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp EEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred EEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEE
T ss_conf 49999899994868955-899651799998999899999489996999989999799
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.69 E-value=1.1e-16 Score=124.53 Aligned_cols=100 Identities=16% Similarity=0.127 Sum_probs=56.5
Q ss_pred EEEEEECCCCCEEEEEE--CCEEEEEECCCCEE-----------EEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 45999716996999981--99399998778608-----------999507988848999807999889998489709999
Q 001534 843 AACIALSKNDSYVMSAS--GGKVSLFNMMTFKV-----------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIY 909 (1058)
Q Consensus 843 i~~i~~s~d~~~la~~s--dg~i~iwd~~~~~~-----------~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iw 909 (1058)
...+++||||+++++++ +++|.+||+.+... +.......-.....+|++ +|..+.+...|.+|..|
T Consensus 260 PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw 338 (441)
T d1qnia2 260 PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKW 338 (441)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEE
T ss_pred CCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEECC-CCEEEECCCCCCEEEEE
T ss_conf 66726899987899907759938999832244575256884247996014554766522657-85599852443168972
Q ss_pred ECCCC----------EEEEEE-----ECCCCCEEEEEECCCCCEEEEEE
Q ss_conf 93155----------367888-----17779868999958999899993
Q 001534 910 NVRVD----------EVKTKL-----KGHQNRITGLAFSPTLNALVSSG 943 (1058)
Q Consensus 910 d~~~~----------~~~~~l-----~~h~~~v~~l~~spd~~~l~s~s 943 (1058)
++... ..+..+ .||...+.+.+++|||+||++++
T Consensus 339 ~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 339 NIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp EHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred CCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECC
T ss_conf 3542213322677765686453266898775245422389884899657
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.62 E-value=2.9e-15 Score=114.92 Aligned_cols=63 Identities=10% Similarity=0.009 Sum_probs=29.6
Q ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCEEEE-EECCCCEEEEECC
Q ss_conf 858999999983899099997899914899916899998146999079999999-9789939999978
Q 001534 596 FDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAV-TTSDNGIKILANS 662 (1058)
Q Consensus 596 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iw~~~ 662 (1058)
+.++|+++.. +.++.+.++.......+..+..... ...+.++|||+++++ +..++++.+|++.
T Consensus 225 ~~~dGk~~~v-~~~~v~vvd~~~~~~v~~~IPvgks---PhGv~vSPDGkyl~~~~~~~~tvsv~d~~ 288 (441)
T d1qnia2 225 AVKAGNFKTI-GDSKVPVVDGRGESEFTRYIPVPKN---PHGLNTSPDGKYFIANGKLSPTVSVIAID 288 (441)
T ss_dssp HHHTTCCBCC-TTCCCCEEECSSSCSSEEEECCBSS---CCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred EECCCCEEEE-CCCCCEEEECCCCCCEEEEEECCCC---CCCCEECCCCCEEEEECCCCCCEEEEEEE
T ss_conf 9669999996-9998289980368706899717988---66726899987899907759938999832
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.58 E-value=1.8e-10 Score=82.30 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=12.5
Q ss_pred CCEEEEECCCCEEEEEEC-CCCEEEEECCC
Q ss_conf 146999079999999978-99399999789
Q 001534 635 SPRLRFNKEGSLLAVTTS-DNGIKILANSD 663 (1058)
Q Consensus 635 v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~ 663 (1058)
...++|+|+++++++... ++.|.+|+...
T Consensus 195 Pr~i~f~pdg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEEECCCCCEEEEECCCCCEEEEEEECC
T ss_conf 089998899866999515899899999559
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3.6e-10 Score=80.22 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=20.8
Q ss_pred CCCEEEEEECCCCCEEEEEEC----CEEEEEECCCCEEEEEEC
Q ss_conf 998459997169969999819----939999877860899950
Q 001534 840 EESAACIALSKNDSYVMSASG----GKVSLFNMMTFKVMTMFM 878 (1058)
Q Consensus 840 ~~~i~~i~~s~d~~~la~~sd----g~i~iwd~~~~~~~~~~~ 878 (1058)
.....++.||||+++++.... -.+.+++..+++.+..+.
T Consensus 409 ~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le 451 (465)
T d1xfda1 409 NCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE 451 (465)
T ss_dssp SCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEC
T ss_conf 8987999999999999998006999849999999997999973
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.45 E-value=3.2e-09 Score=73.83 Aligned_cols=254 Identities=12% Similarity=0.074 Sum_probs=139.8
Q ss_pred CCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 54025686028997369998159972999992788299998367653345751210133345321010136788673899
Q 001534 335 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1058)
Q Consensus 335 ~~~~~~~~~~h~~~V~~~~fspdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i 414 (1058)
.+.+++.++.-...+..++++|||+ ++++...++.|..|+....... +......+.++
T Consensus 16 ~~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~gl 73 (302)
T d2p4oa1 16 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVSGL 73 (302)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEEEE
T ss_pred CCCCEEEECCCCCCCCCEEECCCCC-EEEEECCCCEEEEEECCCCEEE---------------------EECCCCCCCEE
T ss_conf 8620788888998847877999988-9999688998999908998899---------------------97179985368
Q ss_pred EECCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEE
Q ss_conf 98899998999969995999980599820001453057678678999449993699998289939999857881468740
Q 001534 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1058)
Q Consensus 415 ~~spd~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~ 494 (1058)
+|++||+++++...++.+..|+......................+.+.+++. ++++.+.++.+..++...+.......
T Consensus 74 a~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~~ 151 (302)
T d2p4oa1 74 AFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLE 151 (302)
T ss_dssp EECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EECCCCCEEEEECCCCEEEEEEECCCCCCEEECCCCCCCCCCCEEEECCCCC--EEEECCCCCCCEEEECCCCCCEEEEC
T ss_conf 9867788699832895378887101111012102357863221667715797--87503565541024216873036751
Q ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEC
Q ss_conf 88898579973046893299999079909999678898147950899947999986899979997028789860999647
Q 001534 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1058)
Q Consensus 495 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~ 574 (1058)
....... ...........+.+. +..++.+.. ..+.|+.++.
T Consensus 152 ~~~~~~~----------------------------------~~~~~~~~~ngi~~~--~~~l~~~~~---~~~~i~~~~~ 192 (302)
T d2p4oa1 152 HPMLARS----------------------------------NSESVFPAANGLKRF--GNFLYVSNT---EKMLLLRIPV 192 (302)
T ss_dssp CGGGSCS----------------------------------STTCCSCSEEEEEEE--TTEEEEEET---TTTEEEEEEB
T ss_pred CCCCCEE----------------------------------ECCCCCCCCCCCCCC--CCCEEEECC---CCCEEEECCC
T ss_conf 8864014----------------------------------315763224320116--983044037---8876986344
Q ss_pred CCCCEEEEE--CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEE---ECCCCEEEE
Q ss_conf 988146764--177887636999858999999983899099997899914899916899998146999---079999999
Q 001534 575 SEGAIKRTY--SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF---NKEGSLLAV 649 (1058)
Q Consensus 575 ~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~l~~ 649 (1058)
......... ..... ....+++.++|+.+++...++.|..++.. ++..............++++| ++|++.|++
T Consensus 193 ~~~~~~~~~~~~~~~~-~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyv 270 (302)
T d2p4oa1 193 DSTDKPGEPEIFVEQT-NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYV 270 (302)
T ss_dssp CTTSCBCCCEEEEESC-CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEE
T ss_pred CCCCCCCCCCCCCCCC-CCCCEEECCCCCEEEEECCCCCEEEECCC-CCEEEEEECCCCCCCCEEEEECCCCCCCCEEEE
T ss_conf 3333234531015899-87523787999999997489918998789-978999963789888248997087887898999
Q ss_pred EECC
Q ss_conf 9789
Q 001534 650 TTSD 653 (1058)
Q Consensus 650 ~~~d 653 (1058)
++..
T Consensus 271 tt~~ 274 (302)
T d2p4oa1 271 VTNG 274 (302)
T ss_dssp EECT
T ss_pred ECCC
T ss_conf 9889
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.45 E-value=4.4e-09 Score=72.86 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=11.8
Q ss_pred EEEEECC-CCCEEEEE--ECCEEEEEEC
Q ss_conf 3899968-99699999--4991999918
Q 001534 978 TKVQFHN-DQTHLLVV--HESQISVYDS 1002 (1058)
Q Consensus 978 ~~~~fs~-d~~~l~~~--~d~~i~iwd~ 1002 (1058)
..+.|+| +|++|+++ .++.|.+|++
T Consensus 312 ~~i~~~p~~G~~l~va~~~s~~v~v~~~ 339 (365)
T d1jofa_ 312 NAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp CCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred CEEEECCCCCCEEEEEECCCCEEEEEEE
T ss_conf 4789648999999999679994999998
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=5.1e-09 Score=72.42 Aligned_cols=12 Identities=25% Similarity=0.260 Sum_probs=4.1
Q ss_pred EEEECCCCCEEE
Q ss_conf 999868999799
Q 001534 546 MMAYSADGTRLF 557 (1058)
Q Consensus 546 ~i~~s~~~~~l~ 557 (1058)
...|+|+++.++
T Consensus 175 ~~~~spdg~~~~ 186 (269)
T d2hqsa1 175 DADVSSDGKFMV 186 (269)
T ss_dssp EEEECTTSSEEE
T ss_pred CCCCCCCCCEEE
T ss_conf 432234543057
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=5.4e-09 Score=72.26 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=8.4
Q ss_pred CCCCEEEEEECCCCCEEEEE
Q ss_conf 88673899988999989999
Q 001534 407 AAISVNRCVWGPDGLMLGVA 426 (1058)
Q Consensus 407 h~~~v~~i~~spd~~~la~~ 426 (1058)
+........|+|+|+.++..
T Consensus 81 ~~~~~~~~~~spdg~~i~~~ 100 (269)
T d2hqsa1 81 FPRHNGAPAFSPDGSKLAFA 100 (269)
T ss_dssp CSSCEEEEEECTTSSEEEEE
T ss_pred EECCCCCCEECCCCCEEEEE
T ss_conf 20245430244889864676
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.30 E-value=2.5e-08 Score=67.77 Aligned_cols=11 Identities=0% Similarity=-0.031 Sum_probs=4.6
Q ss_pred EEEEEEECCCC
Q ss_conf 36999815997
Q 001534 349 VMSMDFHPQQQ 359 (1058)
Q Consensus 349 V~~~~fspdg~ 359 (1058)
...++++++|.
T Consensus 16 P~~vavd~dG~ 26 (260)
T d1rwia_ 16 PSGVAVDSAGN 26 (260)
T ss_dssp EEEEEECTTCC
T ss_pred CCEEEECCCCC
T ss_conf 78899969999
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=9.4e-08 Score=63.81 Aligned_cols=73 Identities=10% Similarity=-0.018 Sum_probs=26.6
Q ss_pred EEEEEECCCCCEEEEEEC---------CCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEE
Q ss_conf 389998899998999969---------99599998059982000145305767867899944999369999828993999
Q 001534 411 VNRCVWGPDGLMLGVAFS---------KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1058)
Q Consensus 411 v~~i~~spd~~~la~~~~---------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~i 481 (1058)
+....||||+++++.... .+...++|+.++.... ..........+....|||||+. ++-.. ++.+.+
T Consensus 63 ~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~--iafv~-~~nl~~ 138 (465)
T d1xfda1 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQ--LIFIF-ENNIYY 138 (465)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTC--EEEEE-TTEEEE
T ss_pred CCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCCCCEEE-CCCCCCCCCCCCEEEECCCCCE--EEEEE-CCEEEE
T ss_conf 3213898988869999845100476033528999856884564-1576677643110024267856--99996-132999
Q ss_pred EECCCC
Q ss_conf 985788
Q 001534 482 WDVVAG 487 (1058)
Q Consensus 482 wd~~~~ 487 (1058)
.+...+
T Consensus 139 ~~~~~~ 144 (465)
T d1xfda1 139 CAHVGK 144 (465)
T ss_dssp ESSSSS
T ss_pred EECCCC
T ss_conf 954899
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.21 E-value=1e-07 Score=63.55 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=9.6
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 38999889999899996999599998
Q 001534 411 VNRCVWGPDGLMLGVAFSKHIVHLYT 436 (1058)
Q Consensus 411 v~~i~~spd~~~la~~~~d~~i~iwd 436 (1058)
+..++++|||+++++...++.|..|+
T Consensus 30 ~e~iAv~pdG~l~vt~~~~~~I~~i~ 55 (302)
T d2p4oa1 30 LENLASAPDGTIFVTNHEVGEIVSIT 55 (302)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCEEECCCCCEEEEECCCCEEEEEE
T ss_conf 47877999988999968899899990
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.15 E-value=1.9e-07 Score=61.71 Aligned_cols=66 Identities=8% Similarity=0.057 Sum_probs=23.2
Q ss_pred EEEEECCCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 5999716996999981-993999987786089995079888489998079998899984897099999
Q 001534 844 ACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1058)
Q Consensus 844 ~~i~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd 910 (1058)
..++++++++++++.. ++.|..++...................+++.+ ++.++++....+.|..++
T Consensus 143 ~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~ 209 (260)
T d1rwia_ 143 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLL 209 (260)
T ss_dssp CEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEEC
T ss_pred CEEEECCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEE-EEEEEEEECCCCEEEEEE
T ss_conf 2054548998864102564332223431001222101147876312310-001343214899899996
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.11 E-value=2.8e-07 Score=60.59 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=30.8
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEE-ECCCCEEEEEC
Q ss_conf 69998589999999838990999978999148999168999981469990799999999-78993999997
Q 001534 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILAN 661 (1058)
Q Consensus 592 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~ 661 (1058)
..+++..+|+.+++....+.|.+|+.+.++....+..+.. ..++++|.++++.|++. +.+|.|..+++
T Consensus 229 dGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~--~~t~~afg~d~~~lyVt~~~~g~i~~~~~ 297 (314)
T d1pjxa_ 229 DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSS--CEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred EEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEEECCCC--CEEEEEEECCCCEEEEEECCCCCEEEEEC
T ss_conf 0257834785799982799999996999979999979999--87899992898999999878991999978
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.04 E-value=5.5e-07 Score=58.57 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=10.8
Q ss_pred EEEEEEECCCCEEEEEEECCCCEEEEEC
Q ss_conf 3699981599729999927882999983
Q 001534 349 VMSMDFHPQQQTILLVGTNVGDISLWEV 376 (1058)
Q Consensus 349 V~~~~fspdg~~lla~g~~dg~i~iwd~ 376 (1058)
...++++|+|+ ++++-..++.|++||.
T Consensus 25 P~gvavd~dg~-i~VaD~~n~rI~v~d~ 51 (279)
T d1q7fa_ 25 PSGVAVNAQND-IIVADTNNHRIQIFDK 51 (279)
T ss_dssp EEEEEECTTCC-EEEEEGGGTEEEEECT
T ss_pred CCEEEECCCCC-EEEEECCCCEEEEEEC
T ss_conf 00799949998-9999799898999969
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.03 E-value=5.8e-07 Score=58.43 Aligned_cols=70 Identities=16% Similarity=0.332 Sum_probs=38.3
Q ss_pred EEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEE-EEEECCCCEEEEECC
Q ss_conf 48999807999889998489709999931553678881777986899995899989-999389919999689
Q 001534 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNAL-VSSGADAQLCMWSID 954 (1058)
Q Consensus 884 i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l-~s~s~D~~i~iwd~~ 954 (1058)
...+++.. +|++.++....+.|.+|+..+++.+..+.......++++|.||++.| ++.+.++.|...++.
T Consensus 228 pdGiavD~-~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 228 ADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CEEEEEEC-CCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf 10257834-785799982799999996999979999979999878999928989999998789919999789
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.93 E-value=1.4e-06 Score=55.90 Aligned_cols=93 Identities=13% Similarity=0.083 Sum_probs=46.4
Q ss_pred EEECC--CCEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC-C
Q ss_conf 98159--97299999278829999836765334575121013334532101013678867389998899998999969-9
Q 001534 353 DFHPQ--QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS-K 429 (1058)
Q Consensus 353 ~fspd--g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~la~~~~-d 429 (1058)
..||| |+.++.+. +|.|.+.|+.+++... +..+.+.+...+|||||+.||.... +
T Consensus 5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~ 62 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG 62 (281)
T ss_dssp CEEEEEETTEEEEEE--TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred CCCCCCCCCEEEEEE--CCCEEEEECCCCCEEE--------------------EECCCCCCCCEEECCCCCEEEEEEEEC
T ss_conf 258887999999990--9968999899998799--------------------766998526779878999899998628
Q ss_pred -----CEEEEEEECCCCCEEEEEE---EECCCCCEEEEEEECCCCC
Q ss_conf -----9599998059982000145---3057678678999449993
Q 001534 430 -----HIVHLYTYNPTGELRQHLE---IDAHVGGVNDIAFAHPNKQ 467 (1058)
Q Consensus 430 -----~~i~iwd~~~~~~~~~~~~---~~~h~~~v~~i~fs~~~~~ 467 (1058)
..|.+++..+++..+.... ............|+|+++.
T Consensus 63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~ 108 (281)
T d1k32a2 63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNL 108 (281)
T ss_dssp TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCE
T ss_pred CCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 9877228999982599528864168875476444343102798877
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.79 E-value=4.1e-06 Score=52.62 Aligned_cols=241 Identities=13% Similarity=0.064 Sum_probs=131.0
Q ss_pred CCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 99736999815997299999278829999836765334575121013334532101013678867389998899998999
Q 001534 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1058)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~la~ 425 (1058)
...+..++|.++|+ +.++....+.|..|+..+++.... ..........+++++||+++++
T Consensus 39 ~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~-------------------~~~~~~~p~gla~~~dG~l~va 98 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRLFVC 98 (319)
T ss_dssp CCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCEEEE
T ss_pred CCCCEECEECCCCC-EEEEECCCCEEEEEECCCCEEEEE-------------------EECCCCCEEEEEECCCCCEEEE
T ss_conf 86747078999999-999977999999998999959999-------------------9489987038999999999999
Q ss_pred EECC----CEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEE
Q ss_conf 9699----959999805998200014530576786789994499936999982899399998578814687408889857
Q 001534 426 AFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1058)
Q Consensus 426 ~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~ 501 (1058)
...+ +.+...+..+....... .-..-......+++.++|. +.++...... .. ..+.+.
T Consensus 99 ~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~--------~~-------~~g~v~ 160 (319)
T d2dg1a1 99 YLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYS--------TN-------PLGGVY 160 (319)
T ss_dssp ECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBT--------TB-------CCEEEE
T ss_pred ECCCCCCCEEEEEECCCCCEEEEEC-CCCCCCCCCCCEEEEECCC--EEECCCCCCC--------CC-------CCCEEE
T ss_conf 5689731104998738996364442-6777555875226773065--3200135400--------25-------742157
Q ss_pred EEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCC-CEE
Q ss_conf 9973046893299999079909999678898147950899947999986899979997028789860999647988-146
Q 001534 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIK 580 (1058)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~-~~~ 580 (1058)
. +. +++. .+... ...-...+.++|+++++.++.+.. ..+.|+.|++... ...
T Consensus 161 ~--~~--~dg~---------~~~~~-----------~~~~~~pnGia~s~dg~~lyvad~---~~~~I~~~d~~~~g~~~ 213 (319)
T d2dg1a1 161 Y--VS--PDFR---------TVTPI-----------IQNISVANGIALSTDEKVLWVTET---TANRLHRIALEDDGVTI 213 (319)
T ss_dssp E--EC--TTSC---------CEEEE-----------EEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSSSE
T ss_pred E--EE--CCCC---------EEEEE-----------EECCCEEEEEEECCCCCEEEEECC---CCCCEEEEEECCCCCEE
T ss_conf 8--84--1663---------35788-----------612330100010122212787404---68914799976998362
Q ss_pred EEE------CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCC----CCCCCCEEEEECCCCEEEEE
Q ss_conf 764------17788763699985899999998389909999789991489991689----99981469990799999999
Q 001534 581 RTY------SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG----GLPASPRLRFNKEGSLLAVT 650 (1058)
Q Consensus 581 ~~~------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~ 650 (1058)
... ..........+++..+|+..++....+.|.+++. .++.+..+.... ....+++++|.++...+++.
T Consensus 214 ~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t 292 (319)
T d2dg1a1 214 QPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIIC 292 (319)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEE
T ss_pred CCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEECC-CCCEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEE
T ss_conf 0246333312577641036417389999999848998999979-995988996887577867504667780799889998
Q ss_pred EC
Q ss_conf 78
Q 001534 651 TS 652 (1058)
Q Consensus 651 ~~ 652 (1058)
..
T Consensus 293 ~~ 294 (319)
T d2dg1a1 293 SN 294 (319)
T ss_dssp EE
T ss_pred CC
T ss_conf 57
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.75 E-value=5.3e-06 Score=51.89 Aligned_cols=54 Identities=22% Similarity=0.292 Sum_probs=20.6
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEE------CCCCCEEEEEECCCCCEEE
Q ss_conf 8999807999889998489709999931553678881------7779868999958999899
Q 001534 885 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK------GHQNRITGLAFSPTLNALV 940 (1058)
Q Consensus 885 ~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~------~h~~~v~~l~~spd~~~l~ 940 (1058)
..+++.+ +|++.++....+.|.+++ ..++.+..+. ++...+++++|.++...++
T Consensus 231 dGl~vD~-~G~l~Va~~~~g~V~~~~-p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~ 290 (319)
T d2dg1a1 231 DSCCIDS-DDNLYVAMYGQGRVLVFN-KRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLI 290 (319)
T ss_dssp EEEEEBT-TCCEEEEEETTTEEEEEC-TTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEE
T ss_pred EEEEECC-CCCEEEEECCCCEEEEEC-CCCCEEEEEECCCCCCCCCCEEEEEEEECCCCEEE
T ss_conf 3641738-999999984899899997-99959889968875778675046677807998899
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.65 E-value=1.1e-05 Score=49.81 Aligned_cols=25 Identities=8% Similarity=0.150 Sum_probs=8.8
Q ss_pred ECCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 95899989999389919999689874
Q 001534 932 FSPTLNALVSSGADAQLCMWSIDKWE 957 (1058)
Q Consensus 932 ~spd~~~l~s~s~D~~i~iwd~~~~~ 957 (1058)
|||||+.|+.. .++.|+++++++++
T Consensus 240 ~SpDG~~I~f~-~~~~l~~~d~~~g~ 264 (281)
T d1k32a2 240 LNTDGRRILFS-KGGSIYIFNPDTEK 264 (281)
T ss_dssp EEESSSCEEEE-ETTEEEEECTTTCC
T ss_pred CCCCCCEEEEE-ECCEEEEEECCCCC
T ss_conf 86798999998-59999999899998
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.29 E-value=8.3e-05 Score=43.74 Aligned_cols=224 Identities=14% Similarity=0.081 Sum_probs=100.8
Q ss_pred EEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 99981599729999927882999983676533457512101333453210101367886738999889999899996999
Q 001534 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1058)
Q Consensus 351 ~~~fspdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~la~~~~d~ 430 (1058)
+..|++....+..+--..+.|..||..+++... | .....+.++++.++|.++++ +.+
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~------~---------------~~~~~~~~i~~~~dg~l~va-~~~- 78 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKTV------H---------------ALPFMGSALAKISDSKQLIA-SDD- 78 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------E---------------ECSSCEEEEEEEETTEEEEE-ETT-
T ss_pred CCEEECCCCEEEEEECCCCEEEEEECCCCEEEE------E---------------ECCCCCEEEEEECCCCEEEE-EEC-
T ss_conf 875989999999998789999999899895999------9---------------89998179899659988999-737-
Q ss_pred EEEEEEECCCCCEEEEEEEEC--CCCCEEEEEEECCCCCEEEEEECCC----CCEEEEECCCCCEEEEEECCCCCEEEEE
Q ss_conf 599998059982000145305--7678678999449993699998289----9399998578814687408889857997
Q 001534 431 IVHLYTYNPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1058)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~--h~~~v~~i~fs~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~l~~~~~~v~~i~ 504 (1058)
.+.++|..+++... ...... ....++.+.+.++|. +.++...+ +.-.+|.+..++......
T Consensus 79 gl~~~d~~tg~~~~-l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~---------- 145 (295)
T d2ghsa1 79 GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFA---------- 145 (295)
T ss_dssp EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEE----------
T ss_pred CCEEEECCCCEEEE-EEEEECCCCCCCCEEEEECCCCC--EEEEECCCCCCCCCEEEEEECCCCEEEEEE----------
T ss_conf 63895046451357-86640478766101357979999--988742643133330576622996899865----------
Q ss_pred ECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCC------C
Q ss_conf 3046893299999079909999678898147950899947999986899979997028789860999647988------1
Q 001534 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG------A 578 (1058)
Q Consensus 505 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~------~ 578 (1058)
.-.....+.|+++++.++.... ..+.|+.+++... +
T Consensus 146 -----------------------------------~~~~~Ng~~~s~d~~~l~~~dt---~~~~I~~~~~d~~~~~~~~~ 187 (295)
T d2ghsa1 146 -----------------------------------DISIPNSICFSPDGTTGYFVDT---KVNRLMRVPLDARTGLPTGK 187 (295)
T ss_dssp -----------------------------------EESSEEEEEECTTSCEEEEEET---TTCEEEEEEBCTTTCCBSSC
T ss_pred -----------------------------------CCCCCCEEEECCCCCEEEEEEC---CCCEEEEEEECCCCCCCCCC
T ss_conf -----------------------------------0687640246587766898515---66324676453555532453
Q ss_pred E--EEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEE-CCCCEEEEEEC
Q ss_conf 4--67641778876369998589999999838990999978999148999168999981469990-79999999978
Q 001534 579 I--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN-KEGSLLAVTTS 652 (1058)
Q Consensus 579 ~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 652 (1058)
. .....+... ....+++..+|+..++.-..+.|..|+. .++.+..+..+.. .+++++|- ++.+.|++.+.
T Consensus 188 ~~~~~~~~~~~g-~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~--~~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 188 AEVFIDSTGIKG-GMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK--QTTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp CEEEEECTTSSS-EEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS--BEEEEEEESTTSCEEEEEEB
T ss_pred EEEEECCCCCCC-CCCCEEECCCCCEEEEEECCCCEEEECC-CCCEEEEECCCCC--CEEEEEEECCCCCEEEEEEC
T ss_conf 578841675556-6632678699998953207884688569-9928668638998--52798982899999999978
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.27 E-value=9.1e-05 Score=43.47 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=15.8
Q ss_pred EEEEECCCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEEE
Q ss_conf 5999716996999981-993999987786089995079888489998
Q 001534 844 ACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAF 889 (1058)
Q Consensus 844 ~~i~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 889 (1058)
..++++.+|.+.++.. .+.|..|+. +++.+..+..+...+++++|
T Consensus 202 dG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~F 247 (295)
T d2ghsa1 202 DGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAF 247 (295)
T ss_dssp EEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEE
T ss_pred CCEEECCCCCEEEEEECCCCEEEECC-CCCEEEEECCCCCCEEEEEE
T ss_conf 32678699998953207884688569-99286686389985279898
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.13 E-value=0.00018 Score=41.46 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=62.0
Q ss_pred EEEEEECCCCCEEEEEE--CCEEEEEECCCCE-----------EEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 45999716996999981--9939999877860-----------8999507988848999807999889998489709999
Q 001534 843 AACIALSKNDSYVMSAS--GGKVSLFNMMTFK-----------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIY 909 (1058)
Q Consensus 843 i~~i~~s~d~~~la~~s--dg~i~iwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iw 909 (1058)
...+.++|||+++++++ +.++.++|+.... .+..-....-....-+|.. .|....+-.-|.+|.-|
T Consensus 277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~-~g~aytslfids~v~kw 355 (459)
T d1fwxa2 277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVKW 355 (459)
T ss_dssp CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEEE
T ss_pred CCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCC-CCEEEEEEECCCEEEEE
T ss_conf 77338899997899938858957999822535665046884521796113576766203389-84299986123169997
Q ss_pred ECCCC----------EEEEEEECCCCCEEEEE------ECCCCCEEEEEE
Q ss_conf 93155----------36788817779868999------958999899993
Q 001534 910 NVRVD----------EVKTKLKGHQNRITGLA------FSPTLNALVSSG 943 (1058)
Q Consensus 910 d~~~~----------~~~~~l~~h~~~v~~l~------~spd~~~l~s~s 943 (1058)
++... ..+..+.-|-. +-.+. ..|||++|++..
T Consensus 356 ~~~~~~~~~~~~~~~~v~~k~~v~y~-~gh~~~~~g~t~~~dgk~l~~~n 404 (459)
T d1fwxa2 356 NIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLS 404 (459)
T ss_dssp EHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEE
T ss_pred ECCHHHHHHCCCCCCCCEECCCCCCC-CCCCCCCCCCCCCCCCCEEEEEC
T ss_conf 34405566446667731135433457-88774576786788887899803
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.93 E-value=0.0004 Score=39.08 Aligned_cols=81 Identities=10% Similarity=0.065 Sum_probs=51.4
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEE-EEEECCCCC-E
Q ss_conf 93999987786089995079888489998079998899984897099999315536788817779868-999958999-8
Q 001534 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT-GLAFSPTLN-A 938 (1058)
Q Consensus 861 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v~-~l~~spd~~-~ 938 (1058)
|.+.-||..+++.+...+........ ..+- .+.++++|+.||.++.+|..+|+.+..+.-...... -+.|..||+ |
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg-~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQY 534 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGG-TLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCC-EEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CCEEEECCCCCCEEEEECCCCCCCCC-EEEE-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEE
T ss_conf 61787578778667051688988776-0798-699899977999199999998868579989899451677999899999
Q ss_pred EEEEE
Q ss_conf 99993
Q 001534 939 LVSSG 943 (1058)
Q Consensus 939 l~s~s 943 (1058)
++..+
T Consensus 535 v~v~~ 539 (573)
T d1kb0a2 535 VSVAV 539 (573)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99993
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.90 E-value=0.00046 Score=38.65 Aligned_cols=82 Identities=11% Similarity=-0.027 Sum_probs=50.7
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCC-EEEEEECCCCC-
Q ss_conf 9939999877860899950798884899980799988999848970999993155367888177798-68999958999-
Q 001534 860 GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTLN- 937 (1058)
Q Consensus 860 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~-v~~l~~spd~~- 937 (1058)
.|.+.-+|+.+++.+..............-. .+.++++|+.||.++.+|..+|+.+..+.-.... -.-+.|..||+
T Consensus 443 ~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~T--agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkq 520 (571)
T d2ad6a1 443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYT--KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ 520 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEE--TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCCEEEECCCCCCEEEECCCCCCCCCCEEEE--CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCEEEEECCEE
T ss_conf 5617885367784642767899987560596--69979997789969999999986878998999965156489889999
Q ss_pred EEEEEE
Q ss_conf 899993
Q 001534 938 ALVSSG 943 (1058)
Q Consensus 938 ~l~s~s 943 (1058)
|+++..
T Consensus 521 Yi~v~~ 526 (571)
T d2ad6a1 521 YIGSMY 526 (571)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 999990
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.86 E-value=0.00053 Score=38.25 Aligned_cols=85 Identities=9% Similarity=0.093 Sum_probs=52.6
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCE-EEEEECCCCC-
Q ss_conf 99399998778608999507988848999807999889998489709999931553678881777986-8999958999-
Q 001534 860 GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRI-TGLAFSPTLN- 937 (1058)
Q Consensus 860 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v-~~l~~spd~~- 937 (1058)
.|.+.-+|+.+++.+............ .++- .+.+++.|+.||.++.+|..+|+.+..++-..... .-+.+..||+
T Consensus 437 ~G~l~A~D~~tGk~~W~~~~~~~~~gg-~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq 514 (560)
T d1kv9a2 437 SGALLAWDPVKQKAAWKVPYPTHWNGG-TLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ 514 (560)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCC-EEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCCEEEEECCCCEEEEECCCCCCCCCC-EEEE-CCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEE
T ss_conf 664688707788373102578888774-0598-79989997789819999999985827998999955167799989999
Q ss_pred EEEEEECCC
Q ss_conf 899993899
Q 001534 938 ALVSSGADA 946 (1058)
Q Consensus 938 ~l~s~s~D~ 946 (1058)
|++..+..|
T Consensus 515 yv~v~aG~g 523 (560)
T d1kv9a2 515 YVAIMAGWG 523 (560)
T ss_dssp EEEEEECCC
T ss_pred EEEEEECCC
T ss_conf 999991778
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.68 E-value=0.001 Score=36.39 Aligned_cols=82 Identities=11% Similarity=-0.007 Sum_probs=49.1
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCC-EEEEEECCCCC-
Q ss_conf 9939999877860899950798884899980799988999848970999993155367888177798-68999958999-
Q 001534 860 GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTLN- 937 (1058)
Q Consensus 860 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~-v~~l~~spd~~- 937 (1058)
.|.+.-||..+++.+....... ....=.++- .+.+++.|+.||.++.+|..+|+.+..+.-.... -.-+.|..||+
T Consensus 452 ~G~l~A~D~~TG~~~W~~~~~~-~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQ 529 (596)
T d1w6sa_ 452 LGQIKAYNAITGDYKWEKMERF-AVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (596)
T ss_dssp CEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCEEEEEECCCCCEECCCCCCC-CCCCCEEEE-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEE
T ss_conf 5538998078885623327888-874414686-69979997899959999999984836998999954077689989999
Q ss_pred EEEEEE
Q ss_conf 899993
Q 001534 938 ALVSSG 943 (1058)
Q Consensus 938 ~l~s~s 943 (1058)
|++...
T Consensus 530 Yvav~~ 535 (596)
T d1w6sa_ 530 YVAIYY 535 (596)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 999993
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.56 E-value=0.0015 Score=35.24 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=11.3
Q ss_pred EEEEECCCCEEEEECCCCCCCC
Q ss_conf 9999278829999836765334
Q 001534 362 LLVGTNVGDISLWEVGSRERLA 383 (1058)
Q Consensus 362 la~g~~dg~i~iwd~~~~~~~~ 383 (1058)
+.+|+..|.|+|+-+.+++.+.
T Consensus 16 f~SgG~sG~v~v~G~PSmR~l~ 37 (459)
T d1fwxa2 16 FWSSGQSGEMRILGIPSMRELM 37 (459)
T ss_dssp EECCBTTCEEEEEEETTCCEEE
T ss_pred EEECCCCCEEEEEECCCCCEEE
T ss_conf 9407866338999548863587
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.50 E-value=0.0018 Score=34.71 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=11.5
Q ss_pred EEEECCCCCEEEEEECC-CEEEEEEECC
Q ss_conf 99988999989999699-9599998059
Q 001534 413 RCVWGPDGLMLGVAFSK-HIVHLYTYNP 439 (1058)
Q Consensus 413 ~i~~spd~~~la~~~~d-~~i~iwd~~~ 439 (1058)
..++.+++..++.|+.+ ..+.+||..+
T Consensus 80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~~ 107 (387)
T d1k3ia3 80 GISMDGNGQIVVTGGNDAKKTSLYDSSS 107 (387)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGG
T ss_pred EEEEECCCCEEEEECCCCCCEEEECCCC
T ss_conf 8999468868986368886216756755
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.50 E-value=0.0018 Score=34.68 Aligned_cols=80 Identities=14% Similarity=0.124 Sum_probs=46.6
Q ss_pred CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 70999993155367888177798689999589998999938991999968987400102432578989999780389996
Q 001534 904 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH 983 (1058)
Q Consensus 904 g~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 983 (1058)
|.+.-||+.+++.+...+... +...=..+..+.+++.++.|+.++.+|.++|+.+-... ...+... .-+.|.
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~--~~~~~~~-----~P~ty~ 528 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP--TGTGVVA-----APSTYM 528 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE--CSSCCCS-----CCEEEE
T ss_pred CCEEEECCCCCCEEEEECCCC-CCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEE--CCCCCCC-----CCEEEE
T ss_conf 617875787786670516889-88776079869989997799919999999886857998--9899451-----677999
Q ss_pred CCCC-EEEE
Q ss_conf 8996-9999
Q 001534 984 NDQT-HLLV 991 (1058)
Q Consensus 984 ~d~~-~l~~ 991 (1058)
.||+ |+++
T Consensus 529 ~~GkQYv~v 537 (573)
T d1kb0a2 529 VDGRQYVSV 537 (573)
T ss_dssp ETTEEEEEE
T ss_pred ECCEEEEEE
T ss_conf 899999999
|
| >d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=0.00028 Score=40.16 Aligned_cols=82 Identities=15% Similarity=0.284 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHCCCCC-------CHHH
Q ss_conf 310568999998799999704799999999985122212359889999998534337556000024799-------4569
Q 001534 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1058)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1058)
++.. ++|+++.|.||||+..|....|..|+++.-..+...+.+++++|..+....++.+++....+++ .+.+
T Consensus 41 EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~r~nKy~I~ms~~s 119 (149)
T d2nxpa1 41 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDS 119 (149)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECHHH
T ss_conf 9998-899999999999997898789999999822243588999999987379988873248999973798589964999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999984
Q 001534 140 RNIMLVELKK 149 (1058)
Q Consensus 140 r~~l~~~l~~ 149 (1058)
-..|+..|+.
T Consensus 120 ~~lLl~~L~~ 129 (149)
T d2nxpa1 120 YQLLKRHLQE 129 (149)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
T ss_conf 9999999986
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.41 E-value=0.0022 Score=34.01 Aligned_cols=81 Identities=11% Similarity=0.110 Sum_probs=52.0
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCE-EEEEECCCCC-
Q ss_conf 99399998778608999507988848999807999889998489709999931553678881777986-8999958999-
Q 001534 860 GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRI-TGLAFSPTLN- 937 (1058)
Q Consensus 860 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~v-~~l~~spd~~- 937 (1058)
.|.+.-+|+.+++.+.....+...... ..+- .+.++++|+.||.++.+|..+|+.+..++-..... .-+.|..+|+
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g-~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q 542 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLPLWAG-VLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSC-CEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCEEEEECCCCCCEEEECCCCCCCCCC-EEEE-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEE
T ss_conf 775999807899587326779997450-1697-69869996799969999999986867988999962167799989999
Q ss_pred EEEEE
Q ss_conf 89999
Q 001534 938 ALVSS 942 (1058)
Q Consensus 938 ~l~s~ 942 (1058)
|++..
T Consensus 543 Yv~i~ 547 (582)
T d1flga_ 543 YLGVT 547 (582)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99999
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.29 E-value=0.0031 Score=33.09 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=44.6
Q ss_pred CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 70999993155367888177798689999589998999938991999968987400102432578989999780389996
Q 001534 904 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH 983 (1058)
Q Consensus 904 g~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 983 (1058)
|.+.-||..+++.+.... +..+..+=.++..+.+++.++.|+.++.+|.++|+.+-... ...+... .-+.|.
T Consensus 453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~--~~~~~~a-----~P~tY~ 524 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK--IPSGAIG-----YPMTYT 524 (596)
T ss_dssp EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE--CSSCCCS-----CCEEEE
T ss_pred CEEEEEECCCCCEECCCC-CCCCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEE--CCCCCCC-----CCEEEE
T ss_conf 538998078885623327-88887441468669979997899959999999984836998--9999540-----776899
Q ss_pred CCCC-EEEE
Q ss_conf 8996-9999
Q 001534 984 NDQT-HLLV 991 (1058)
Q Consensus 984 ~d~~-~l~~ 991 (1058)
.||+ |+++
T Consensus 525 ~dGkQYvav 533 (596)
T d1w6sa_ 525 HKGTQYVAI 533 (596)
T ss_dssp ETTEEEEEE
T ss_pred ECCEEEEEE
T ss_conf 899999999
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.14 E-value=0.0043 Score=32.06 Aligned_cols=82 Identities=10% Similarity=0.018 Sum_probs=48.8
Q ss_pred CCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCEEEEE
Q ss_conf 89709999931553678881777986899995899989999389919999689874001024325789899997803899
Q 001534 902 EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQ 981 (1058)
Q Consensus 902 ~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 981 (1058)
..|.+.-+|+.+++.+.....- .+..+=..+..+.+++.++.|+.++.+|.++|+.+-...+ ..+.. -.-+.
T Consensus 442 ~~G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l--~~~~~-----a~P~t 513 (571)
T d2ad6a1 442 EMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM--PSGGI-----GSPMT 513 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC--SSCCC-----SCCEE
T ss_pred CCCCEEEECCCCCCEEEECCCC-CCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEEC--CCCCE-----ECCEE
T ss_conf 7561788536778464276789-9987560596699799977899699999999868789989--99965-----15648
Q ss_pred ECCCCC-EEEE
Q ss_conf 968996-9999
Q 001534 982 FHNDQT-HLLV 991 (1058)
Q Consensus 982 fs~d~~-~l~~ 991 (1058)
|..||+ |+++
T Consensus 514 y~~dGkqYi~v 524 (571)
T d2ad6a1 514 YSFKGKQYIGS 524 (571)
T ss_dssp EEETTEEEEEE
T ss_pred EEECCEEEEEE
T ss_conf 98899999999
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.76 E-value=0.009 Score=29.90 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=16.9
Q ss_pred EEEEEECCCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCE
Q ss_conf 45999716996999981-9939999877860899950798884
Q 001534 843 AACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAA 884 (1058)
Q Consensus 843 i~~i~~s~d~~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i 884 (1058)
..++.+|+....+..-+ .|.+.+||+.++.++..-+-....|
T Consensus 258 Pvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~i 300 (327)
T d1utca2 258 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETI 300 (327)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred EEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCE
T ss_conf 7799964337999999667589999756662899940478844
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.76 E-value=0.009 Score=29.89 Aligned_cols=95 Identities=11% Similarity=0.039 Sum_probs=36.4
Q ss_pred CCEEEEEECCCCCEEEEE-ECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCC
Q ss_conf 673899988999989999-6999599998059982000145305767867899944999369999828993999985788
Q 001534 409 ISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1058)
Q Consensus 409 ~~v~~i~~spd~~~la~~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~ 487 (1058)
..+..++|.+..+.+.-. ..++.|...++++..... .+......+.++++..-+.. +..+-...+.|.+.++...
T Consensus 36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~dg~ 111 (263)
T d1npea_ 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (263)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CCEEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEE---EEEECCCCCCEEEEECCCCE-EEEECCCCCEEEEEECCCC
T ss_conf 7579999985899999998999919999766587289---88701264207999636886-8884267897998805881
Q ss_pred CEEEEEECCCCCEEEEEECC
Q ss_conf 14687408889857997304
Q 001534 488 RKQYTFEGHEAPVYSVCPHH 507 (1058)
Q Consensus 488 ~~~~~l~~~~~~v~~i~~~~ 507 (1058)
.....+......+..++++|
T Consensus 112 ~~~~l~~~~l~~p~~l~vdp 131 (263)
T d1npea_ 112 QRRVLFDTGLVNPRGIVTDP 131 (263)
T ss_dssp SCEEEECSSCSSEEEEEEET
T ss_pred EEEEEECCCCCCCCEEEEEC
T ss_conf 67777125666872799925
|
| >d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Encephalitozoon cuniculi [TaxId: 6035]
Probab=96.76 E-value=0.00074 Score=37.27 Aligned_cols=95 Identities=14% Similarity=0.211 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHCCCCC-------CHHH
Q ss_conf 310568999998799999704799999999985122212359889999998534337556000024799-------4569
Q 001534 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1058)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1058)
++.. ++|+++.+.||||+..+...+|..|+++.-..+. ...+++++|+.+.+..+..+++....+++ .+.+
T Consensus 23 EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i~~~~~l~~n~~~~~~r~nKy~i~ms~~s 100 (131)
T d2j4ba1 23 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYA 100 (131)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECHHH
T ss_conf 9998-8999999999999978878899999998130288-8999999987469998882229999986596588967999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999984212395643457888874068999999979
Q 001534 140 RNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSL 179 (1058)
Q Consensus 140 r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~ 179 (1058)
-..|+..|++-- ..-+..+|++.+
T Consensus 101 ~~lL~~fL~~~~----------------~~~il~iin~~l 124 (131)
T d2j4ba1 101 FDLLINFLEERN----------------LTYILKILNQHL 124 (131)
T ss_dssp HHHHHHHHHHTT----------------CHHHHHHHHHHE
T ss_pred HHHHHHHHHHCC----------------CHHHHHHHHHHE
T ss_conf 999999998588----------------659999999833
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.73 E-value=0.0094 Score=29.76 Aligned_cols=102 Identities=13% Similarity=0.012 Sum_probs=38.2
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCE
Q ss_conf 86789994499936999982899399998578814687408889857997304689329999907990999967889814
Q 001534 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534 (1058)
Q Consensus 455 ~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 534 (1058)
.+..++|.+..++ ++.+-..++.|...++..+.....+......+.++++.... +++..+-...+.|.+.+++.....
T Consensus 37 ~~~~ld~D~~~~~-iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~-~~lY~~d~~~~~I~~~~~dg~~~~ 114 (263)
T d1npea_ 37 VIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQRR 114 (263)
T ss_dssp EEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCE
T ss_pred CEEEEEEEECCCE-EEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEECCC-CEEEEECCCCCEEEEEECCCCEEE
T ss_conf 5799999858999-99998999919999766587289887012642079996368-868884267897998805881677
Q ss_pred EEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 795089994799998689997999
Q 001534 535 VDYDAPGNWCTMMAYSADGTRLFS 558 (1058)
Q Consensus 535 ~~~~~~~~~v~~i~~s~~~~~l~~ 558 (1058)
............+++.|...+++.
T Consensus 115 ~l~~~~l~~p~~l~vdp~~g~ly~ 138 (263)
T d1npea_ 115 VLFDTGLVNPRGIVTDPVRGNLYW 138 (263)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEE
T ss_pred EEECCCCCCCCEEEEECCCCCEEE
T ss_conf 771256668727999256692799
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.011 Score=29.33 Aligned_cols=51 Identities=10% Similarity=0.024 Sum_probs=18.6
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 6789994499936999982899399998578814687408889857997304
Q 001534 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1058)
Q Consensus 456 v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~i~~~~ 507 (1058)
+..+++.+.+.. +..+-...+.|.+.++........+.........++.+|
T Consensus 79 p~glAvD~~~~~-lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~ 129 (266)
T d1ijqa1 79 PDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 129 (266)
T ss_dssp CCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEET
T ss_pred CCEEEEEECCCE-EEEEECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEC
T ss_conf 546898642652-899954899998576489537888727998833699980
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.63 E-value=0.011 Score=29.27 Aligned_cols=118 Identities=8% Similarity=0.094 Sum_probs=53.3
Q ss_pred EEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCC--CCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECC
Q ss_conf 9999278829999836765334575121013334532--10101367886738999889999899996999599998059
Q 001534 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMP--LQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1058)
Q Consensus 362 la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~i~~spd~~~la~~~~d~~i~iwd~~~ 439 (1058)
+.+++.++.|.-.|..+|+.+ |........ ............ ++. .+..++.+..++.+.-.|..+
T Consensus 69 vyv~t~~~~v~AlDa~tG~~l-------W~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~v~~~~~~g~l~Alda~t 136 (560)
T d1kv9a2 69 IYTSMSWSRVIAVDAASGKEL-------WRYDPEVAKVKARTSCCDAVNRG---VAL--WGDKVYVGTLDGRLIALDAKT 136 (560)
T ss_dssp EEEEEGGGEEEEEETTTCCEE-------EEECCCCCGGGGGGCTTCSCCCC---CEE--EBTEEEEECTTSEEEEEETTT
T ss_pred EEEECCCCEEEEEECCCCCEE-------EEECCCCCCCCCCCCCCCCCCCC---CCE--ECCEEEEEECCCEEEEEECCC
T ss_conf 999789995999968999879-------88779877644544322465357---504--688499973898799997778
Q ss_pred CCCEEEEEEEECCCC-CEEEEEEECCCCCEEEEEEC------CCCCEEEEECCCCCEEEEEE
Q ss_conf 982000145305767-86789994499936999982------89939999857881468740
Q 001534 440 TGELRQHLEIDAHVG-GVNDIAFAHPNKQLCIVTCG------DDKMIKVWDVVAGRKQYTFE 494 (1058)
Q Consensus 440 ~~~~~~~~~~~~h~~-~v~~i~fs~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~l~ 494 (1058)
++.+........+.. .++..-.-.++. ++.+. ..|.|.-+|..+|+.+.++.
T Consensus 137 G~~~w~~~~~~~~~~~~~~~~p~v~~~~---vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 137 GKAIWSQQTTDPAKPYSITGAPRVVKGK---VIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp CCEEEEEECSCTTSSCBCCSCCEEETTE---EEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEECCCCCCCCCCEEEEEEEEEECCC---CCCCCCCEECCCCCEEEEEECCCCEEEEEEE
T ss_conf 9577305766755404543200450685---1036531100135538999778862776641
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.42 E-value=0.015 Score=28.40 Aligned_cols=32 Identities=3% Similarity=0.192 Sum_probs=11.4
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCEEEE
Q ss_conf 999807999889998489709999931553678
Q 001534 886 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1058)
Q Consensus 886 ~l~~s~~~~~~lasg~~dg~I~iwd~~~~~~~~ 918 (1058)
++..|+ .-.++..-+.-|.+++||+.++.++.
T Consensus 260 amqvs~-kygiiyviTK~G~i~lyDleTgt~i~ 291 (327)
T d1utca2 260 AMQISE-KHDVVFLITKYGYIHLYDLETGTCIY 291 (327)
T ss_dssp EEEEET-TTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEC-CCCEEEEEECCCEEEEEECCCCCEEE
T ss_conf 999643-37999999667589999756662899
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.28 E-value=0.018 Score=27.90 Aligned_cols=99 Identities=10% Similarity=0.074 Sum_probs=52.1
Q ss_pred CEEEEEEECCCCEEEEEEECCC----CEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 7369998159972999992788----299998367653345751210133345321010136788673899988999989
Q 001534 348 NVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1058)
Q Consensus 348 ~V~~~~fspdg~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l 423 (1058)
.+...++|||+++++.+-+.+| .+++.|+.+++.+.. . + .......++|++|++.|
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-~-----------------i--~~~~~~~~~W~~D~~~~ 185 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------L--ERVKFSCMAWTHDGKGM 185 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------E--EEECSCCEEECTTSSEE
T ss_pred EECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCC-C-----------------C--CCCCCCCEEECCCCCEE
T ss_conf 33425853789879999556667210467741676403144-2-----------------2--24323641785799899
Q ss_pred EEEECC----------------CEEEEEEECCCCCEEEEEEEECC--CCCEEEEEEECCCCC
Q ss_conf 999699----------------95999980599820001453057--678678999449993
Q 001534 424 GVAFSK----------------HIVHLYTYNPTGELRQHLEIDAH--VGGVNDIAFAHPNKQ 467 (1058)
Q Consensus 424 a~~~~d----------------~~i~iwd~~~~~~~~~~~~~~~h--~~~v~~i~fs~~~~~ 467 (1058)
.....+ ..|..+.+.+...-. ...+... ...+..+..+.+++.
T Consensus 186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~ 246 (430)
T d1qfma1 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRY 246 (430)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCE
T ss_pred EEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC-CCCCCCCCCCCEEEEEECCCCCCE
T ss_conf 9997626667654433345786338999889886531-002232357725775302687624
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.28 E-value=0.018 Score=27.89 Aligned_cols=55 Identities=13% Similarity=0.265 Sum_probs=29.9
Q ss_pred CCEEEEEECCCCCEEEEEE-CC----CEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCC
Q ss_conf 6738999889999899996-99----95999980599820001453057678678999449993
Q 001534 409 ISVNRCVWGPDGLMLGVAF-SK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ 467 (1058)
Q Consensus 409 ~~v~~i~~spd~~~la~~~-~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~ 467 (1058)
-.+...++|||++++|.+- .. ..++++|+.+++.+.. .+. ......++|++|++.
T Consensus 125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~--~i~--~~~~~~~~W~~D~~~ 184 (430)
T d1qfma1 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGKG 184 (430)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSSE
T ss_pred CEECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCC--CCC--CCCCCCEEECCCCCE
T ss_conf 133425853789879999556667210467741676403144--222--432364178579989
|
| >d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=96.15 E-value=0.0016 Score=35.08 Aligned_cols=98 Identities=20% Similarity=0.283 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHCCCCC-------CHHH
Q ss_conf 310568999998799999704799999999985122212359889999998534337556000024799-------4569
Q 001534 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1058)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1058)
++.. ++|+++.++||||+..+. .+|..|+++.-..+...+.+++++|+.+.+..+..+++....+++ .+.+
T Consensus 25 EL~~-lLyPvFvh~yL~Lv~~~~-~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~nKy~I~ms~~s 102 (134)
T d2j49a1 25 ELSY-IMYPIFIYLFLNLVAKNP-VYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT 102 (134)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHCH-HHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECHHH
T ss_conf 9999-899999999999997587-99999999960777789999999987589999997658899987399588976899
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999984212395643457888874068999999979
Q 001534 140 RNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSL 179 (1058)
Q Consensus 140 r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~ 179 (1058)
-..|+..|++--.. --+-+..+|++.+
T Consensus 103 ~~lLl~fL~~~~~~-------------g~~~il~ii~~~l 129 (134)
T d2j49a1 103 LNLLLYFLNENESI-------------GGSLIISVINQHL 129 (134)
T ss_dssp HHHHHHHHHHTGGG-------------THHHHHHHHHHHE
T ss_pred HHHHHHHHHHCCCC-------------HHHHHHHHHHHHC
T ss_conf 99999999866631-------------1789999999840
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.13 E-value=0.021 Score=27.38 Aligned_cols=81 Identities=14% Similarity=0.074 Sum_probs=48.7
Q ss_pred CCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCEEEEEE
Q ss_conf 97099999315536788817779868999958999899993899199996898740010243257898999978038999
Q 001534 903 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 982 (1058)
Q Consensus 903 dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~spd~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 982 (1058)
.|.+.-+|+.+++.+...+.+. ++..-..+..+.+++.++.|+.++.+|.++|+.+-...+ ..+.. -.-+.|
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~--~~~~~-----~~P~ty 536 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT--GSGIV-----SPPITW 536 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC--SSCCC-----SCCEEE
T ss_pred CCEEEEECCCCCCEEEECCCCC-CCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEEC--CCCCC-----CCCEEE
T ss_conf 7759998078995873267799-974501697698699967999699999999868679889--99962-----167799
Q ss_pred CCCCC-EEEE
Q ss_conf 68996-9999
Q 001534 983 HNDQT-HLLV 991 (1058)
Q Consensus 983 s~d~~-~l~~ 991 (1058)
..||+ |+++
T Consensus 537 ~~~G~qYv~i 546 (582)
T d1flga_ 537 EQDGEQYLGV 546 (582)
T ss_dssp EETTEEEEEE
T ss_pred EECCEEEEEE
T ss_conf 9899999999
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.10 E-value=0.022 Score=27.30 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=13.4
Q ss_pred EEEEEECCCCCEEEEEECCC-CCEEEEECCCCC
Q ss_conf 78999449993699998289-939999857881
Q 001534 457 NDIAFAHPNKQLCIVTCGDD-KMIKVWDVVAGR 488 (1058)
Q Consensus 457 ~~i~fs~~~~~~~l~s~~~d-~~i~iwd~~~~~ 488 (1058)
...++.++++ +++.|+.+ ..+.+||..+..
T Consensus 79 ~~~~~~~~g~--i~v~Gg~~~~~~~~yd~~~~~ 109 (387)
T d1k3ia3 79 PGISMDGNGQ--IVVTGGNDAKKTSLYDSSSDS 109 (387)
T ss_dssp CEEEECTTSC--EEEECSSSTTCEEEEEGGGTE
T ss_pred EEEEEECCCC--EEEEECCCCCCEEEECCCCCC
T ss_conf 6899946886--898636888621675675574
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=0.026 Score=26.78 Aligned_cols=222 Identities=9% Similarity=-0.010 Sum_probs=85.6
Q ss_pred EEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCC----EEEEEECCCCCEEEEEECC
Q ss_conf 999980599820001453057678678999449993699998289939999857881----4687408889857997304
Q 001534 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR----KQYTFEGHEAPVYSVCPHH 507 (1058)
Q Consensus 432 i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~l~~~~~~v~~i~~~~ 507 (1058)
|+..++++.... .+......+.+++|.+..+. +..+-...+.|.-.++.... ....+......+..+++.+
T Consensus 12 I~~~~l~~~~~~----~~~~~~~~~~~id~d~~~~~-lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~ 86 (266)
T d1ijqa1 12 VRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 86 (266)
T ss_dssp EEEEETTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred EEEEECCCCCCE----EEECCCCCEEEEEEEECCCE-EEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEE
T ss_conf 899989998526----64179985599999808999-9999997997999993578887614899848999854689864
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCC
Q ss_conf 68932999990799099996788981479508999479999868999799970287898609996479881467641778
Q 001534 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587 (1058)
Q Consensus 508 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 587 (1058)
.. +++..+-...+.|.+.+++.................+++.|...+++.... .....|...++.......... ..
T Consensus 87 ~~-~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~--~~~~~I~r~~~dGs~~~~l~~-~~ 162 (266)
T d1ijqa1 87 IH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGVDIYSLVT-EN 162 (266)
T ss_dssp TT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCCEEEEEC-SS
T ss_pred CC-CEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCEEEEECC--CCCCCEEEECCCCCCEECCCC-CC
T ss_conf 26-528999548999985764895378887279988336999800394887126--997302686368883441200-45
Q ss_pred CCCEEEEEECCCCCEEEEE-ECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEE-CCCCEEEEECCCC
Q ss_conf 8763699985899999998-389909999789991489991689999814699907999999997-8993999997897
Q 001534 588 KRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 664 (1058)
Q Consensus 588 ~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~ 664 (1058)
-.....+++.+.++.++.+ ...+.|...++....................+++. +..|+... .++.|...+..++
T Consensus 163 ~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g 239 (266)
T d1ijqa1 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG 239 (266)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred CCEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEE--CCEEEEEECCCCEEEEEECCCC
T ss_conf 3201699861335699995289679999989999779999389855664799998--9999999899996999999899
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.00 E-value=0.018 Score=27.79 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC--HHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 499999999975231799999999987098863--78899998547979899884377
Q 001534 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN--MKHFEDQVQAGEWDEVERYLCGF 60 (1058)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~~~ 60 (1058)
.+|+.+=|++||..+||.+++.+|.+|..+.++ ...-....|+-+|..+.++-.++
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkKI 64 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV 64 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999999888299999999987789870466640372125899899999999
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=87.35 E-value=0.38 Score=18.81 Aligned_cols=29 Identities=7% Similarity=0.284 Sum_probs=14.3
Q ss_pred EEEEEE--ECCCCCEEEEEECCCCCEEEEEC
Q ss_conf 678999--44999369999828993999985
Q 001534 456 VNDIAF--AHPNKQLCIVTCGDDKMIKVWDV 484 (1058)
Q Consensus 456 v~~i~f--s~~~~~~~l~s~~~d~~i~iwd~ 484 (1058)
+..+++ ++....++++....+|.+..|.+
T Consensus 130 vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l 160 (353)
T d1h6la_ 130 VYGFSLYHSQKTGKYYAMVTGKEGEFEQYEL 160 (353)
T ss_dssp CCCEEEEECTTTCCEEEEEECSSSEEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEEECCCCEEEEEEE
T ss_conf 5699977427778079999758860899999
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.46 E-value=0.42 Score=18.49 Aligned_cols=122 Identities=8% Similarity=0.100 Sum_probs=63.4
Q ss_pred CCEEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE
Q ss_conf 97369998159972999992788299998367653345751210133345321010136788673899988999989999
Q 001534 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1058)
Q Consensus 347 ~~V~~~~fspdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~la~~ 426 (1058)
.....+++++... +++.|+.++ ++|-....-....... ........+. .-..|..++|+.| .|++.
T Consensus 37 ~~~~LLAVsn~~G-Ll~aa~~~~-l~V~~t~~l~~~~~~~-----~~~~~~~~~~-----~ip~v~~vafs~d--~l~v~ 102 (381)
T d1xipa_ 37 ASLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITSD-----STPLTFKWEK-----EIPDVIFVCFHGD--QVLVS 102 (381)
T ss_dssp SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHSS-----SCCCCCSEEE-----ECTTEEEEEEETT--EEEEE
T ss_pred CCCCEEEEECCCC-EEEEECCCE-EEEEEHHHHHHHHHCC-----CCCCCCEECC-----CCCCEEEEEEECC--EEEEE
T ss_conf 4442689957778-899988997-7999989978786556-----7888623416-----8998689986189--89999
Q ss_pred ECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEE
Q ss_conf 6999599998059982000145305767867899944999369999828993999985788146
Q 001534 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1058)
Q Consensus 427 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~fs~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1058)
.++.+..++...-.... ....-..++..+.++|. .++....++.+.++++..+...
T Consensus 103 -~~~~l~~~~~~~l~~~~---~~~~~~~~~~~~~~~p~----~~~l~~~~~~~~~~~l~~~~~~ 158 (381)
T d1xipa_ 103 -TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTK 158 (381)
T ss_dssp -ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEE
T ss_pred -ECCCEEEEEEECCCCCC---CCCCCCCCCCCEECCCC----EEEEEECCCCEEEEEECCCCCC
T ss_conf -58978999851001454---46554556111021886----0699965897789994158644
|